Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of ssaN gene of NC_006905_P3

1494

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) CFSAN001992_04515
( YP_007470661.1 )

type III secretion system ATPase SsaN

NC_020307
(Salmonella enterica CFSAN001992)

0.0

2) SE451236_12940
( YP_008265614.1 )

type III secretion system ATPase

NC_021820
(Salmonella enterica 08-1736)

0.0

3) ssaN
( YP_005237285.1 )

type III secretion system ATPase

NC_016856
(Salmonella enterica 14028S)

0.0

4) SSPA1336
( YP_002142175.1 )

type III secretion system ATPase

NC_011147
(Salmonella enterica AKU12601)

0.0

5) ssaN
( YP_150689.1 )

type III secretion ATP synthase

NC_006511
(Salmonella enterica ATCC 9150)

0.0

6) SEEB0189_12460
( YP_008308807.1 )

type III secretion system ATPase

NC_021844
(Salmonella enterica CFSAN000189)

0.0

7) CFSAN001921_10070
( YP_008255388.1 )

type III secretion system ATPase

NC_021814
(Salmonella enterica CFSAN001921)

0.0

8) STMMW_14201
( YP_005232474.1 )

putative type III secretion ATP synthase

NC_016854
(Salmonella enterica D23580)

0.0

9) ssaN
( NP_460380.1 )

type III secretion system ATPase

NC_003197
(Salmonella enterica LT2)

0.0

10) SPAB_01910
( YP_001588133.1 )

type III secretion system ATPase

NC_010102
(Salmonella enterica SGSC4150; SPB7)

0.0

11) ssaN
( YP_005181259.1 )

type III secretion ATP synthase

NC_016810
(Salmonella enterica SL1344)

0.0

12) SNSL254_A1526
( YP_002040667.1 )

type III secretion system ATPase

NC_011080
(Salmonella enterica SL254)

0.0

13) ssaN
( YP_005242316.1 )

type III secretion system ATPase

NC_016857
(Salmonella enterica ST4/74)

0.0

14) STMDT12_C14310
( YP_005247127.1 )

type III secretion system ATPase

NC_016860
(Salmonella enterica T000240)

0.0

15) STU288_03395
( YP_007901784.1 )

type III secretion system ATPase SsaN

NC_021151
(Salmonella enterica U288)

0.0

16) ssaN
( YP_005251919.1 )

type III secretion system ATPase

NC_016863
(Salmonella enterica UK-1)

0.0

17) SEEH1578_16310
( YP_008247321.1 )

type III secretion system ATPase SsaN

NC_021810
(Salmonella enterica 41578)

0.0

18) SU5_02031
( YP_006087665.1 )

Flagellum-specific ATP synthase FliI

NC_017623
(Salmonella enterica B182)

0.0

19) CFSAN002069_01925
( YP_008249245.1 )

type III secretion system ATPase

NC_021812
(Salmonella enterica CFSAN002069)

0.0

20) SeHA_C1548
( YP_002045418.1 )

type III secretion system ATPase

NC_011083
(Salmonella enterica SL476)

0.0

21) SeAg_B1758
( YP_002146627.1 )

type III secretion system ATPase

NC_011149
(Salmonella enterica SL483)

0.0

22) SBOV14121
( YP_008505282.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_022241
(Salmonella enterica 3114)

0.0

23) SeSA_A1511
( YP_002114428.1 )

type III secretion system ATPase

NC_011094
(Salmonella enterica CVM19633)

0.0

24) CFSAN002050_13470
( YP_008260605.1 )

type III secretion system ATPase

NC_021818
(Salmonella enterica CFSAN002050)

0.0

25) ssaN
( YP_005396812.1 )

type III secretion ATP synthase

NC_017046
(Salmonella enterica 798)

0.0

26) SN31241_24850
( YP_008360401.1 )

secretion system apparatus ATP synthase SsaN

NC_021902
(Salmonella enterica USMARC-S3124.1)

0.0

27) ssaN
( YP_216423.1 )

type III secretion system ATPase

NC_006905
(Salmonella enterica SC-B67)

0.0

100

28) ssaN
( YP_008480902.1 )

putative type III secretion ATP synthase

NC_022221
(Salmonella enterica CDC1983-67)

0.0

29) ssaN
( YP_002243730.1 )

type III secretion system ATPase

NC_011294
(Salmonella enterica P125109)

0.0

30) ssaN
( YP_002637872.1 )

type III secretion system ATPase

NC_012125
(Salmonella enterica RKS4594)

0.0

31) ssaN
( YP_005212440.1 )

putative type III secretion ATP synthase

NC_016831
(Salmonella enterica RKS5078)

0.0

32) ssaN
( YP_002226670.1 )

type III secretion system ATPase

NC_011274
(Salmonella enterica 287/91)

0.0

33) I137_05680
( YP_008380646.1 )

type III secretion system ATPase

NC_021984
(Salmonella enterica S06004)

0.0

34) SeD_A1928
( YP_002215717.1 )

type III secretion system ATPase

NC_011205
(Salmonella enterica CT_02021853)

0.0

35) ssaN
( NP_456113.1 )

putative type III secretion ATP synthase

NC_003198
(Salmonella enterica CT18)

0.0

36) STBHUCCB_13730
( YP_005216931.1 )

secretion system apparatus ATP synthase ssaN

NC_016832
(Salmonella enterica P-stx-12)

0.0

37) ssaN
( NP_805086.1 )

type III secretion system ATPase

NC_004631
(Salmonella enterica Ty2)

0.0

38) TY21A_06520
( YP_007925608.1 )

type III secretion system ATPase

NC_021176
(Salmonella enterica Ty21a)

0.0

39) SARI_01567
( YP_001570603.1 )

type III secretion system ATPase

NC_010067
(Salmonella enterica RSK2980)

0.0

40) SG1301
( YP_454981.1 )

type III secretion system ATPase

NC_007712
(Sodalis glossinidius morsitans)

2e-126

41) ssaN
( YP_002923049.1 )

type III secretion system ATPase

NC_012751
(Candidatus Hamiltonella defensa T5A)

7e-115

42) fliI1
( NP_991815.1 )

type III secretion system ATPase

NC_005810
(Yersinia pestis 91001)

2e-112

43) A1122_03805
( YP_005520456.1 )

type III secretion system ATPase

NC_017168
(Yersinia pestis A1122)

2e-112

44) YpAngola_A3933
( YP_001608232.1 )

type III secretion system ATPase

NC_010159
(Yersinia pestis Angola)

2e-112

45) YPA_4016
( YP_653922.1 )

type III secretion system ATPase

NC_008150
(Yersinia pestis Antiqua)

2e-112

46) YPO0267
( YP_002345348.1 )

type III secretion system ATPase

NC_003143
(Yersinia pestis CO92)

2e-112

47) YPD4_0231
( YP_005503443.1 )

flagellum-specific ATP synthase

NC_017154
(Yersinia pestis D106004)

2e-112

48) YPD8_0236
( YP_005507319.1 )

flagellum-specific ATP synthase

NC_017160
(Yersinia pestis D182038)

2e-112

49) YPC_0741
( YP_005622727.1 )

putative type III secretion system ATP synthase

NC_017265
(Yersinia pestis Harbin 35)

2e-112

50) fliI
( NP_667863.1 )

type III secretion system ATPase

NC_004088
(Yersinia pestis KIM)

2e-112

51) YPN_3401
( YP_649328.1 )

type III secretion system ATPase

NC_008149
(Yersinia pestis Nepal516)

2e-112

52) YPDSF_3704
( YP_001165027.1 )

type III secretion system ATPase

NC_009381
(Yersinia pestis Pestoides F)

2e-112

53) YPZ3_0229
( YP_003566401.1 )

flagellum-specific ATP synthase

NC_014029
(Yersinia pestis Z176003)

2e-112

54) YPTB0323
( YP_068869.1 )

type III secretion system ATPase

NC_006155
(Yersinia pseudotuberculosis IP 32953)

2e-112

55) YPTS_0347
( YP_001870793.1 )

type III secretion system ATPase

NC_010634
(Yersinia pseudotuberculosis PB1/+)

2e-112

56) YpsIP31758_3818
( YP_001402772.1 )

type III secretion system ATPase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

3e-112

57) YPK_3906
( YP_001722624.1 )

type III secretion system ATPase

NC_010465
(Yersinia pseudotuberculosis YPIII)

1e-111

58) Sbal117_2086
( YP_006037317.1 )

FliI/YscN family ATPase

NC_017579
(Shewanella baltica OS117)

9e-106

59) Sbal_1970
( YP_001050343.1 )

type III secretion system ATPase

NC_009052
(Shewanella baltica OS155)

9e-106

60) Sbal175_2395
( YP_006020952.1 )

FliI/YscN family ATPase

NC_017571
(Shewanella baltica BA175)

1e-105

61) Sbal195_2274
( YP_001554702.1 )

type III secretion system ATPase

NC_009997
(Shewanella baltica OS195)

9e-105

62) Sbal678_2284
( YP_005273491.1 )

FliI/YscN family ATPase

NC_016901
(Shewanella baltica OS678)

9e-105

63) sctN
( NP_930973.1 )

type III secretion system ATPase

NC_005126
(Photorhabdus luminescens TTO1)

1e-103

64) yscN
( YP_436213.1 )

type III secretion system ATPase

NC_007645
(Hahella chejuensis KCTC 2396)

2e-103

65) Y11_35401
( YP_006007039.1 )

type III secretion cytoplasmic ATP synthase

NC_017564
(Yersinia enterocolitica Y11)

1e-102

66) YE105_C0333
( YP_004296534.1 )

Secretion system apparatus ATP synthase ssaN

NC_015224
(Yersinia enterocolitica 105.5R(r))

1e-102

67) PLES_36301
( YP_002441215.1 )

type III secretion system ATPase

NC_011770
(Pseudomonas aeruginosa LESB58)

1e-102

68) PAM18_3349
( YP_005975934.1 )

type III secretion system ATPase

NC_017548
(Pseudomonas aeruginosa M18)

1e-102

69) sctN
( YP_003039889.1 )

type iii secretion component protein sctn

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

1e-102

70) SVI_2234
( YP_003556983.1 )

ATPase

NC_014012
(Shewanella violacea DSS12)

3e-102

71) pscN
( YP_005980839.1 )

type III secretion system ATPase

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

1e-101

72) PA1697
( NP_250388.1 )

type III secretion system ATPase

NC_002516
(Pseudomonas aeruginosa PAO1)

1e-101

73) G655_16695
( YP_007710179.1 )

type III secretion system ATPase

NC_020912
(Pseudomonas aeruginosa B136-33)

2e-101

74) PADK2_17215
( YP_006483424.1 )

type III secretion system ATPase

NC_018080
(Pseudomonas aeruginosa DK2)

2e-101

75) pscN
( YP_791548.1 )

type III secretion system ATPase

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

2e-101

76) CV_2603
( NP_902273.1 )

type III secretion system ATPase

NC_005085
(Chromobacterium violaceum ATCC 12472)

6e-101

77) ascN
( YP_001144298.1 )

type III secretion system ATPase

NC_009350
(Aeromonas salmonicida A449)

3e-100

78) Y11_p0781
( YP_006007926.1 )

type III secretion cytoplasmic ATP synthase

NC_017565
(Yersinia enterocolitica Y11)

3e-100

79) YPDSF_3977
( YP_001154606.1 )

type III secretion system ATPase

NC_009377
(Yersinia pestis Pestoides F)

3e-100

80) yscN
( YP_005082213.1 )

ATP synthase yscN (Yop proteins secretion ATPase)

NC_016642
(Pseudovibrio sp. FO-BEG1)

4e-100

81) yscN
( YP_001004078.1 )

type III secretion system ATPase

NC_008791
(Yersinia enterocolitica 8081)

6e-100

82) yscN
( NP_995371.1 )

type III secretion system ATPase

NC_005813
(Yersinia pestis 91001)

6e-100

83) yscN
( YP_001604472.1 )

type III secretion system ATPase

NC_010157
(Yersinia pestis Angola)

6e-100

84) YPA_CD0022
( YP_636814.1 )

type III secretion system ATPase

NC_008122
(Yersinia pestis Antiqua)

6e-100

85) yscN
( NP_395174.1 )

type III secretion system ATPase

NC_003131
(Yersinia pestis CO92)

6e-100

86) pYV0067
( YP_068476.1 )

type III secretion system ATPase

NC_006153
(Yersinia pseudotuberculosis IP 32953)

6e-100

87) YPTS_4285
( YP_001874685.1 )

type III secretion system ATPase

NC_010635
(Yersinia pseudotuberculosis PB1/+)

6e-100

88) YE105_P0022
( YP_004424924.1 )

type III secretion system ATPase

NC_015475
(Yersinia enterocolitica 105.5R(r))

4e-98

89) yscN
( YP_005503173.1 )

type III secretion system ATPase

NC_017153
(Yersinia pestis D106004)

6e-98

90) yscN
( YP_005506956.1 )

type III secretion system ATPase

NC_017157
(Yersinia pestis D182038)

6e-98

91) yscN
( YP_003560532.1 )

type III secretion system ATPase

NC_014017
(Yersinia pestis Z176003)

6e-98

92) fliI
( YP_006791443.1 )

flagellum-specific ATP synthase

NC_018665
(Exiguobacterium antarcticum Eab7)

3e-96

93) Desde_3522
( YP_006431597.1 )

type III secretion system ATPase, FliI/YscN

NC_018017
(Desulfitobacterium dehalogenans ATCC 51507)

6e-96

94) yscN
( YP_004677249.1 )

ATP synthase yscN

NC_015717
(Hyphomicrobium sp. MC1)

9e-96

95) Exig_1876
( YP_001814345.1 )

FliI/YscN family ATPase

NC_010556
(Exiguobacterium sibiricum 255-15)

1e-95

96) Clos_1482
( YP_001513022.1 )

flagellar protein export ATPase FliI

NC_009922
(Alkaliphilus oremlandii OhILAs)

2e-95

97) fliI
( YP_006845396.1 )

flagellum-specific ATP synthase FliI

NC_018704
(Amphibacillus xylanus NBRC 15112)

3e-95

98) Amet_2722
( YP_001320533.1 )

flagellar protein export ATPase FliI

NC_009633
(Alkaliphilus metalliredigens QYMF)

6e-95

99) NT01EI_0957
( YP_002932405.1 )

type III secretion ATPase FliI/YscN family, putative

NC_012779
(Edwardsiella ictaluri 93-146)

1e-94

100) DSY2986
( YP_519219.1 )

hypothetical protein

NC_007907
(Desulfitobacterium hafniense Y51)

1e-94

101) fliI
( YP_001486765.1 )

flagellum-specific ATP synthase

NC_009848
(Bacillus pumilus SAFR-032)

2e-94

102) Dhaf_4147
( YP_002460591.1 )

peptidase C14, ICE, catalytic subunit p20, active site

NC_011830
(Desulfitobacterium hafniense DCB-2)

6e-94

103) sctN
( YP_007365639.1 )

type III secretion system ATPase

NC_020127
(Lawsonia intracellularis N343)

6e-94

104) sctN
( YP_594915.1 )

type III secretion system ATPase

NC_008011
(Lawsonia intracellularis PHE/MN1-00)

6e-94

105) escN
( YP_003366502.1 )

T3SS translocator EscN

NC_013716
(Citrobacter rodentium ICC168)

7e-94

106) HCH_03268
( YP_434451.1 )

type III secretion system ATPase

NC_007645
(Hahella chejuensis KCTC 2396)

7e-94

107) sctO
( YP_004672369.1 )

type III secretion chaperone

NC_015713
(Simkania negevensis Z)

8e-94

108) hrcN
( YP_198730.1 )

type III secretion system ATPase

NC_006834
(Xanthomonas oryzae KACC10331)

1e-93

109) XOO_0085
( YP_449114.1 )

type III secretion system ATPase

NC_007705
(Xanthomonas oryzae MAFF 311018)

1e-93

110) PXO_03396
( YP_001911284.1 )

type III secretion system ATPase

NC_010717
(Xanthomonas oryzae PXO99A)

1e-93

111) fliI
( YP_004877245.1 )

flagellar protein export ATPase FliI

NC_016047
(Bacillus subtilis TU-B-10)

2e-93

112) fliI
( YP_003973068.1 )

flagellum-specific ATP synthase

NC_014639
(Bacillus atrophaeus 1942)

2e-93

113) fliI
( NP_389506.2 )

flagellum-specific ATP synthase

NC_000964
(Bacillus subtilis 168)

2e-93

114) fliI
( YP_007533579.1 )

flagellar-specific ATPase FliI

NC_020507
(Bacillus subtilis 6051-HGW)

2e-93

115) fliI
( YP_006629813.1 )

flagellar-specific ATPase

NC_018520
(Bacillus subtilis QB928)

2e-93

116) fliI
( YP_007426806.1 )

flagellum-specific ATP synthase

NC_020244
(Bacillus subtilis XF-1)

3e-93

117) Marpi_1086
( YP_005096796.1 )

flagellar protein export ATPase FliI

NC_016751
(Marinitoga piezophila KA3)

3e-93

118) A7A1_3461
( YP_007209674.1 )

flagellum-specific ATP synthase

NC_019896
(Bacillus subtilis BSP1)

4e-93

119) fliI
( YP_003866028.1 )

flagellum-specific ATP synthase

NC_014479
(Bacillus subtilis W23)

4e-93

120) hrcN
( YP_004754980.1 )

HrcN

NC_015856
(Collimonas fungivorans Ter331)

5e-93

121) fliI
( YP_005560954.1 )

flagellum-specific ATP synthase

NC_017196
(Bacillus subtilis BEST195)

5e-93

122) fliI
( YP_004207677.1 )

flagellum-specific ATP synthase

NC_014976
(Bacillus subtilis BSn5)

5e-93

123) fliI
( YP_007662433.1 )

flagellum-specific ATP synthase

NC_020832
(subtilis subtilis BAB-1)

6e-93

124) fliI
( YP_005556750.1 )

flagellar protein export ATPase FliI

NC_017195
(Bacillus subtilis RO-NN-1)

8e-93

125) MY9_1771
( YP_006231564.1 )

flagellar-specific ATPase

NC_017743
(Bacillus sp. JS)

1e-92

126) fliI
( YP_006180656.1 )

flagellar export ATPase

NC_017668
(Halobacillus halophilus DSM 2266)

1e-92

127) escN
( YP_002331410.1 )

translocator EscN

NC_011601
(Escherichia coli E2348/69)

3e-92

128) escN
( YP_003236088.1 )

translocator EscN

NC_013364
(Escherichia coli 11128)

3e-92

129) escN
( YP_003501874.1 )

escN

NC_013941
(Escherichia coli CB9615)

5e-92

130) ECH74115_5062
( YP_002273166.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_011353
(Escherichia coli EC4115)

5e-92

131) escN
( NP_290268.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

5e-92

132) ECO55CA74_21225
( YP_006161350.1 )

escN

NC_017656
(Escherichia coli RM12579)

5e-92

133) ECs4568
( NP_312595.1 )

EscN

NC_002695
(Escherichia coli Sakai)

5e-92

134) escN
( YP_003080480.1 )

LEE-encoded type III secretion system factor

NC_013008
(Escherichia coli TW14359)

5e-92

135) CDCO157_4303
( YP_006315168.1 )

protein EscN

NC_017906
(Escherichia coli Xuzhou21)

5e-92

136) hrcN
( YP_005636505.1 )

type III secretion ATPase HrcN

NC_017271
(Xanthomonas campestris 756C)

9e-92

137) hrcN
( YP_001904474.1 )

type III secretion system ATPase

NC_010688
(Xanthomonas campestris B100)

2e-91

138) fliI
( YP_001394546.1 )

hypothetical protein

NC_009706
(Clostridium kluyveri DSM 555)

2e-91

139) CKR_1054
( YP_002471519.1 )

hypothetical protein

NC_011837
(Clostridium kluyveri NBRC 12016)

2e-91

140) XC_3006
( YP_244074.1 )

type III secretion system ATPase

NC_007086
(Xanthomonas campestris 8004)

3e-91

141) hrcN
( NP_636610.1 )

type III secretion system ATPase

NC_003902
(Xanthomonas campestris ATCC 33913)

3e-91

142) EAT1b_2917
( YP_002887276.1 )

FliI/YscN family ATPase

NC_012673
(Exiguobacterium sp. AT1b)

5e-91

143) Adeg_2041
( YP_003239969.1 )

flagellar protein export ATPase FliI

NC_013385
(Ammonifex degensii KC4)

6e-91

144) Desku_1782
( YP_004517151.1 )

flagellar protein export ATPase FliI

NC_015573
(Desulfotomaculum kuznetsovii DSM 6115)

6e-91

145) ETAC_04210
( YP_007628333.1 )

protein EsaN

NC_020796
(Edwardsiella tarda C07-087)

8e-91

146) esaN
( YP_003294933.1 )

type III secretion system ATPase

NC_013508
(Edwardsiella tarda EIB202)

8e-91

147) esaN
( YP_005698432.1 )

protein EsaN

NC_017309
(Edwardsiella tarda FL6-60)

8e-91

148) sctN
( YP_003709967.1 )

type III secretion cytoplasmic ATPase SctN

NC_014225
(Waddlia chondrophila WSU 86-1044)

8e-91

149) FliI
( NP_623057.1 )

flagellar biosynthesis/type III secretory pathway ATPase

NC_003869
(Thermoanaerobacter tengcongensis MB4)

9e-91

150) Acear_1643
( YP_003828213.1 )

type III secretion system ATPase, FliI/YscN

NC_014378
(Acetohalobium arabaticum DSM 5501)

2e-90

151) fliI
( YP_007497253.1 )

flagellar-specific ATPase

NC_020410
(Bacillus amyloliquefaciens UCMB5036)

2e-90

152) Toce_1098
( YP_003825482.1 )

type III secretion system ATPase, FliI/YscN

NC_014377
(Thermosediminibacter oceani DSM 16646)

2e-90

153) fliI
( YP_007401436.1 )

flagellum-specific ATP synthase

NC_020210
(Geobacillus sp. GHH01)

2e-90

154) Cthe_0468
( YP_001036899.1 )

flagellar protein export ATPase FliI

NC_009012
(Clostridium thermocellum ATCC 27405)

2e-90

155) Clo1313_1752
( YP_005688260.1 )

FliI/YscN family ATPase

NC_017304
(Clostridium thermocellum DSM 1313)

2e-90

156) fliI
( YP_004857301.1 )

flagellar protein export ATPase FliI

NC_016012
(Candidatus Arthromitus sp. SFB-rat-Yit)

3e-90

157) GYMC52_1129
( YP_004131738.1 )

FliI/YscN family ATPase

NC_014915
(Geobacillus sp. Y412MC52)

3e-90

158) fliI
( YP_003253104.1 )

flagellum-specific ATP synthase

NC_013411
(Geobacillus sp. Y412MC61)

3e-90

159) Thethe_01417
( YP_007298756.1 )

flagellar protein export ATPase FliI

NC_019970
(Thermoanaerobacterium thermosaccharolyticum M0795)

3e-90

160) fliI
( YP_359843.1 )

flagellum-specific ATP synthase

NC_007503
(Carboxydothermus hydrogenoformans Z-2901)

4e-90

161) fliI
( YP_008077983.1 )

flagellum-specific ATP-synthase FliI

NC_021362
(Bacillus licheniformis 9945A)

4e-90

162) sctN
( YP_008396.1 )

type III secretion system ATPase

NC_005861
(Candidatus Protochlamydia amoebophila UWE25)

5e-90

163) fliI
( YP_006328501.1 )

flagellum-specific ATP synthase

NC_017912
(Bacillus amyloliquefaciens Y2)

1e-89

164) fliI
( YP_005420914.1 )

flagellum-specific ATP synthase

NC_017061
(Bacillus amyloliquefaciens YAU B9601-Y2)

1e-89

165) DvMF_2435
( YP_002436844.1 )

type III secretion system ATPase

NC_011769
(Desulfovibrio vulgaris Miyazaki F)

6e-90

166) C770_GR4pC1267
( YP_007193550.1 )

ATPase FliI/YscN family

NC_019848
(Sinorhizobium meliloti GR4)

6e-90

167) Tsac_1784
( YP_006392389.1 )

flagellar protein export ATPase FliI

NC_017992
(Thermoanaerobacterium saccharolyticum JW/SL-YS485)

6e-90

168) Sgly_0598
( YP_004264962.1 )

type III secretion system ATPase, FliI/YscN

NC_015172
(Syntrophobotulus glycolicus DSM 8271)

7e-90

169) fliI
( YP_147075.1 )

flagellum-specific ATP synthase

NC_006510
(Geobacillus kaustophilus HTA426)

8e-90

170) fliI
( YP_001421201.1 )

flagellum-specific ATP synthase

NC_009725
(Bacillus amyloliquefaciens FZB42)

9e-90

171) fliI
( YP_008420989.1 )

flagellar-specific ATPase

NC_022081
(Bacillus amyloliquefaciens UCMB5113)

9e-90

172) sctN, cdsN
( YP_004651370.1 )

type III secretion ATPase

NC_015702
(Parachlamydia acanthamoebae UV-7)

1e-89

173) GC56T3_2331
( YP_003671878.1 )

flagellar protein export ATPase FliI

NC_014206
(Geobacillus sp. C56-T3)

1e-89

174) fliI
( NP_971825.1 )

flagellum-specific ATP synthase FliI

NC_002967
(Treponema denticola ATCC 35405)

1e-89

175) CTN_0467
( YP_002534009.1 )

Flagellum-specific ATP synthase

NC_011978
(Thermotoga neapolitana DSM 4359)

1e-89

176) fliI
( YP_007186361.1 )

flagellum-specific ATP synthase

NC_019842
(Bacillus amyloliquefaciens AS43.3)

1e-89

177) fliI
( YP_005130307.1 )

flagellum-specific ATP synthase

NC_016784
(Bacillus amyloliquefaciens CAU B946)

1e-89

178) fliI
( YP_003920291.1 )

flagellar-specific ATPase

NC_014551
(Bacillus amyloliquefaciens DSM 7)

1e-89

179) fliI
( YP_007445635.1 )

flagellum-specific ATP synthase

NC_020272
(Bacillus amyloliquefaciens IT-45)

1e-89

180) fliI
( YP_005545551.1 )

flagellar-specific ATPase

NC_017190
(Bacillus amyloliquefaciens LL3)

1e-89

181) fliI
( YP_005541467.1 )

flagellum-specific ATP synthase

NC_017188
(Bacillus amyloliquefaciens TA208)

1e-89

182) fliI
( YP_008412578.1 )

flagellar-specific ATPase

NC_022075
(Bacillus amyloliquefaciens UCMB-5033)

1e-89

183) fliI
( YP_005549818.1 )

flagellum-specific ATP synthase

NC_017191
(Bacillus amyloliquefaciens XH7)

1e-89

184) Calow_1860
( YP_004003189.1 )

atpase, flii/yscn family

NC_014657
(Caldicellulosiruptor owensensis OL)

1e-89

185) Tthe_1452
( YP_003852050.1 )

ATPase, FliI/YscN family

NC_014410
(Thermoanaerobacterium thermosaccharolyticum DSM 571)

1e-89

186) fliI
( YP_003564636.1 )

flagellum-specific ATP synthase

NC_014019
(Bacillus megaterium QM B1551)

2e-89

187) GTCCBUS3UF5_14130
( YP_004981826.1 )

flagellar-specific ATP synthase

NC_016593
(Geobacillus thermoleovorans CCB_US3_UF5)

2e-89

188) fliI
( YP_006713220.1 )

flagellum-specific ATP synthase

NC_006322
(Bacillus licheniformis DSM 13)

2e-89

189) fliI
( YP_079017.1 )

flagellum-specific ATP synthase

NC_006270
(Bacillus licheniformis DSM 13)

2e-89

190) hrcN
( YP_004850009.1 )

type III secretion system ATPase

NC_016010
(Xanthomonas axonopodis F1)

3e-89

191) hrcN
( YP_362163.1 )

type III secretion system ATPase

NC_007508
(Xanthomonas campestris 85-10)

3e-89

192) fliI
( YP_008435714.1 )

flagellum-specific ATP synthase FliI

NC_022097
(Treponema pedis T A4)

3e-89

193) fliI
( YP_003936763.1 )

flagellum-specific ATP synthase

NC_014614
(Clostridium sticklandii DSM 519)

3e-89

194) hrcN
( NP_640767.1 )

type III secretion system ATPase

NC_003919
(Xanthomonas axonopodis 306)

4e-89

195) XAC29_02110
( YP_007634915.1 )

type III secretion system ATPase

NC_020800
(Xanthomonas axonopodis Xac29-1)

4e-89

196) hrcN
( YP_007648837.1 )

HrcN protein

NC_020815
(Xanthomonas citri Aw12879)

4e-89

197) fliI
( YP_005668612.1 )

flagellar protein export ATPase FliI

NC_017294
(Candidatus Arthromitus sp. SFB-mouse-Yit)

5e-89

198) Selsp_1699
( YP_004414114.1 )

ATPase, FliI/YscN family

NC_015437
(Selenomonas sputigena ATCC 35185)

5e-89

199) fliI
( YP_005847511.1 )

flagellum-specific ATP synthase

NC_017464
(Ignavibacterium album JCM 16511)

5e-89

200) SFBM_0957
( YP_004771465.1 )

flagellar protein export ATPase FliI

NC_015913
(Candidatus Arthromitus sp. mouse isolate)

6e-89

201) Varpa_4973
( YP_004157244.1 )

type III secretion apparatus h+-transporting two-sector ATPase

NC_014931
(Variovorax paradoxus EPS)

6e-89

202) fliI
( YP_003206642.1 )

flagellum-specific ATP synthase

NC_013260
(Candidatus Methylomirabilis oxyfera )

6e-89

203) Thexy_1329
( YP_004471034.1 )

flagellar protein export ATPase FliI

NC_015555
(Thermoanaerobacterium xylanolyticum LX-11)

6e-89

204) NH44784_014581
( YP_008028553.1 )

Flagellum-specific ATP synthase FliI

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

7e-89

205) COPRO5265_0319
( YP_002246686.1 )

flagellum-specific ATP synthase

NC_011295
(Coprothermobacter proteolyticus DSM 5265)

7e-89

206) hrcN
( YP_005630670.1 )

type III secretion ATPase HrcN

NC_017267
(Xanthomonas oryzae BLS256)

1e-88

207) Trebr_0967
( YP_004439534.1 )

FliI/YscN family ATPase

NC_015500
(Treponema brennaborense DSM 12168)

1e-88

208) fliI
( YP_003599357.1 )

flagellum-specific ATP synthase

NC_014103
(Bacillus megaterium DSM 319)

1e-88

209) fliI
( YP_005493230.1 )

strongly flagellar ATPase fliI

NC_017138
(Bacillus megaterium WSH-002)

1e-88

210) fliI
( YP_002316084.1 )

flagellum-specific ATP synthase

NC_011567
(Anoxybacillus flavithermus WK1)

8e-89

211) Selin_2210
( YP_004113486.1 )

ATPase, FliI/YscN family

NC_014836
(Desulfurispirillum indicum S5)

9e-89

212) Bsel_1744
( YP_003699818.1 )

flagellar protein export ATPase FliI

NC_014219
(Bacillus selenitireducens MLS10)

9e-89

213) Spiaf_2102
( YP_005475857.1 )

FliI/YscN family ATPase

NC_017098
(Spirochaeta africana DSM 8902)

2e-88

214) fliI
( NP_970140.1 )

flagellum-specific ATP synthase

NC_005363
(Bdellovibrio bacteriovorus HD100)

2e-88

215) fliI
( YP_007024260.1 )

flagellum-specific ATP synthase

NC_019567
(Bdellovibrio bacteriovorus Tiberius)

2e-88

216) Tnap_0848
( YP_003346354.1 )

flagellar protein export ATPase FliI

NC_013642
(Thermotoga naphthophila RKU-10)

3e-88

217) fliI
( YP_001125196.1 )

flagellum-specific ATP synthase

NC_009328
(Geobacillus thermodenitrificans NG80-2)

3e-88

218) Tpet_0706
( YP_001244302.1 )

flagellar protein export ATPase FliI

NC_009486
(Thermotoga petrophila RKU-1)

3e-88

219) Fnod_0758
( YP_001410268.1 )

flagellar protein export ATPase FliI

NC_009718
(Fervidobacterium nodosum Rt17-B1)

4e-88

220) fliI
( YP_004568579.1 )

FliI/YscN family ATPase

NC_015634
(Bacillus coagulans 2-6)

5e-88

221) fliI
( YP_007372197.1 )

flagellum-specific ATP synthase FliI

NC_020134
(Clostridium stercorarium DSM 8532)

1e-87

222) Pjdr2_3454
( YP_003012173.1 )

FliI/YscN family ATPase

NC_012914
(Paenibacillus sp. JDR-2)

1e-87

223) fliI
( YP_005432271.1 )

putative flagellum-specific ATP synthase

NC_017068
(Selenomonas ruminantium TAM6421)

1e-87

224) Clo1100_2408
( YP_005148385.1 )

flagellar protein export ATPase FliI

NC_016791
(Clostridium sp. BNL1100)

7e-88

225) Bcoa_0054
( YP_004858060.1 )

flagellar protein export ATPase FliI

NC_016023
(Bacillus coagulans 36D1)

7e-88

226) TRQ2_0730
( YP_001738765.1 )

flagellar protein export ATPase FliI

NC_010483
(Thermotoga sp. RQ2)

8e-88

227) fliI
( YP_001787980.1 )

flagellar protein export ATPase FliI

NC_010520
(Clostridium botulinum Loch Maree)

2e-87

228) rhcN
( NP_768456.1 )

RhcN protein

NC_004463
(Bradyrhizobium japonicum USDA 110)

2e-87

229) rhcN
( YP_005612841.1 )

RhcN protein

NC_017249
(Bradyrhizobium japonicum USDA 6)

2e-87

230) Ferpe_0492
( YP_005470749.1 )

type III secretion system ATPase, FliI/YscN

NC_017095
(Fervidobacterium pennivorans DSM 9078)

2e-87

231) mlr6342
( NP_106866.1 )

ATP synthase in type III secretion system, hrcN

NC_002678
(Mesorhizobium loti MAFF303099)

2e-87

232) fliI
( YP_007678655.1 )

FliI

NC_020887
(Clostridium stercorarium DSM 8532)

2e-87

233) TM0218
( NP_228033.1 )

flagellum-specific ATP synthase

NC_000853
(Thermotoga maritima MSB8)

2e-87

234) Tmari_0216
( YP_007976567.1 )

Flagellum-specific ATP synthase FliI

NC_021214
(Thermotoga maritima MSB8)

2e-87

235) fliI
( YP_006913534.1 )

Flagellum-specific ATP synthase FliI

NC_018867
(Dehalobacter sp. CF)

2e-87

236) fliI
( YP_006910546.1 )

Flagellum-specific ATP synthase FliI

NC_018866
(Dehalobacter sp. DCA)

2e-87

237) fliI
( YP_002949240.1 )

flagellum-specific ATP synthase

NC_012793
(Geobacillus sp. WCH70)

2e-87

238) GY4MC1_2685
( YP_003989992.1 )

ATPase, FliI/YscN family

NC_014650
(Geobacillus sp. Y4.1MC1)

2e-87

239) Geoth_2698
( YP_004588667.1 )

flagellar protein export ATPase FliI

NC_015660
(Geobacillus thermoglucosidasius C56-YS93)

2e-87

240) fliI
( YP_006788456.1 )

flagellum-specific ATP synthase FliI

NC_018664
(Clostridium acidurici 9a)

3e-87

241) Ccel_2048
( YP_002506374.1 )

ATPase FliI/YscN

NC_011898
(Clostridium cellulolyticum H10)

3e-87

242) Desca_1795
( YP_004497554.1 )

flagellar protein export ATPase FliI

NC_015565
(Desulfotomaculum carboxydivorans CO-1-SRB)

3e-87

243) Desmer_3913
( YP_006623620.1 )

type III secretion system ATPase, FliI/YscN

NC_018515
(Desulfosporosinus meridiei DSM 13257)

3e-87

244) fliI
( YP_001384903.1 )

flagellar protein export ATPase FliI

NC_009697
(Clostridium botulinum ATCC 19397)

4e-87

245) fliI
( YP_001388372.1 )

flagellar protein export ATPase FliI

NC_009698
(Clostridium botulinum Hall)

4e-87

246) Halha_0655
( YP_007314721.1 )

type III secretion apparatus H+-transporting two-sector ATPase/flagellar protein export ATPase FliI

NC_019978
(Halobacteroides halobius DSM 5150)

4e-87

247) TherJR_1539
( YP_003640293.1 )

flagellar protein export ATPase FliI

NC_014152
(Thermincola potens JR)

4e-87

248) Thebr_1283
( YP_004186240.1 )

FliI/YscN family ATPase

NC_014964
(Thermoanaerobacter brockii Ako-1)

4e-87

249) Teth39_1254
( YP_001665244.1 )

flagellar protein export ATPase FliI

NC_010321
(Thermoanaerobacter pseudethanolicus ATCC 33223)

4e-87

250) Thet_1210
( YP_003904104.1 )

ATPase, FliI/YscN family

NC_014538
(Thermoanaerobacter sp. X513)

4e-87

251) Teth514_1690
( YP_001663312.1 )

flagellar protein export ATPase FliI

NC_010320
(Thermoanaerobacter sp. X514)

4e-87

252) fliI
( YP_001255158.1 )

flagellar protein export ATPase FliI

NC_009495
(Clostridium botulinum ATCC 3502)

5e-87

253) fliI
( YP_002335389.1 )

flagellar protein export ATPase FliI

NC_011653
(Thermosipho africanus TCF52B)

5e-87

254) Bcell_2500
( YP_004095488.1 )

ATPase, FliI/YscN family

NC_014829
(Bacillus cellulosilyticus DSM 2522)

5e-87

255) fliI
( YP_005675557.1 )

flagellar protein export ATPase FliI

NC_017297
(Clostridium botulinum 230613)

6e-87

256) fliI
( YP_001391960.1 )

flagellar protein export ATPase FliI

NC_009699
(Clostridium botulinum Langeland)

6e-87

257) Csac_1260
( YP_001180054.1 )

flagellar protein export ATPase FliI

NC_009437
(Caldicellulosiruptor saccharolyticus DSM 8903)

6e-87

258) Thewi_1394
( YP_004820100.1 )

flagellar protein export ATPase FliI

NC_015958
(Thermoanaerobacter wiegelii Rt8.B1)

6e-87

259) fliI
( YP_002805163.1 )

flagellar protein export ATPase FliI

NC_012563
(Clostridium botulinum Kyoto)

7e-87

260) fliI
( YP_003779195.1 )

flagellum-specific ATP synthase

NC_014328
(Clostridium ljungdahlii ATCC 49587)

7e-87

261) fliI
( YP_002863651.1 )

flagellar protein export ATPase FliI

NC_012658
(Clostridium botulinum 657)

8e-87

262) B1NLA3E_18115
( YP_007911866.1 )

flagellum-specific ATP synthase

NC_021171
(Bacillus sp. 1NLA3E)

8e-87

263) fliI
( YP_001782276.1 )

flagellar protein export ATPase FliI

NC_010516
(Clostridium botulinum Okra)

9e-87

264) fliI
( YP_004526981.1 )

flagellar protein export ATPase FliI

NC_015577
(Treponema azotonutricium ZAS-9)

9e-87

265) Theco_2102
( YP_007213222.1 )

flagellar protein export ATPase FliI

NC_019897
(Thermobacillus composti KWC4)

1e-86

266) Rmar_0787
( YP_003290073.1 )

FliI/YscN family ATPase

NC_013501
(Rhodothermus marinus DSM 4252)

2e-86

267) hrcN
( YP_003774217.1 )

type III secretion ATP synthase

NC_014323
(Herbaspirillum seropedicae SmR1)

2e-86

268) Clocl_1964
( YP_005046490.1 )

type III secretion system ATPase, FliI/YscN

NC_016627
(Clostridium clariflavum DSM 19732)

2e-86

269) fliI
( YP_003424997.1 )

flagellum-specific ATP synthase

NC_013791
(Bacillus pseudofirmus OF4)

2e-86

270) fliI
( YP_005959530.1 )

flagellar-specific ATP synthase

NC_017542
(Paenibacillus polymyxa M1)

2e-86

271) PPSC2_c2091
( YP_003946304.1 )

flagellar protein export ATPase flii

NC_014622
(Paenibacillus polymyxa SC2)

2e-86

272) Moth_0774
( YP_429635.1 )

ATPase FliI/YscN

NC_007644
(Moorella thermoacetica ATCC 39073)

3e-86

273) Desdi_2869
( YP_007221677.1 )

type III secretion system ATPase, FliI/YscN

NC_019903
(Desulfitobacterium dichloroeliminans LMG P-21439)

3e-86

274) Aaci_1392
( YP_003184808.1 )

FliI/YscN family ATPase

NC_013205
(Alicyclobacillus acidocaldarius DSM 446)

3e-86

275) Tmel_1269
( YP_001306503.1 )

flagellar protein export ATPase FliI

NC_009616
(Thermosipho melanesiensis BI429)

3e-86

276) bscN
( YP_006967892.1 )

ATP synthase in type III secretion system

NC_019382
(Bordetella bronchiseptica 253)

4e-86

277) HPL003_18150
( YP_005076595.1 )

flagellum-specific ATP synthase

NC_016641
(Paenibacillus terrae HPL-003)

4e-86

278) PPE_01886
( YP_003870260.1 )

flagellum-specific ATP synthase

NC_014483
(Paenibacillus polymyxa E681)

4e-86

279) Acel_0844
( YP_872603.1 )

flagellar protein export ATPase FliI

NC_008578
(Acidothermus cellulolyticus 11B)

5e-86

280) A11Q_2143
( YP_007645966.1 )

flagellum-specific ATP synthase

NC_020813
(Bdellovibrio exovorus JSS)

5e-86

281) Dtox_0691
( YP_003190228.1 )

FliI/YscN family ATPase

NC_013216
(Desulfotomaculum acetoxidans DSM 771)

6e-86

282) H04402_02754
( YP_005679292.1 )

flagellum-specific ATP synthase FliI

NC_017299
(Clostridium botulinum H04402 065)

6e-86

283) fliI
( YP_004673136.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_015714
(Treponema paraluiscuniculi Cuniculi A)

6e-86

284) fliI
( YP_005517785.1 )

FliI/YscN family ATPase

NC_017167
(Alicyclobacillus acidocaldarius Tc-4-1)

6e-86

285) fliI
( YP_002772960.1 )

flagellum-specific ATP synthase

NC_012491
(Brevibacillus brevis NBRC 100599)

7e-86

286) fliI
( YP_002523930.1 )

flagellar protein export ATPase FliI

NC_011961
(Thermomicrobium roseum DSM 5159)

8e-86

287) Rhom172_2094
( YP_004825833.1 )

FliI/YscN family ATPase

NC_015966
(Rhodothermus marinus SG0.5JP17-172)

8e-86

288) Clopa_2934
( YP_007941449.1 )

flagellar protein export ATPase FliI

NC_021182
(Clostridium pasteurianum BC1)

8e-86

289) bscN
( YP_006899829.1 )

ATP synthase in type III secretion system

NC_018829
(Bordetella bronchiseptica MO149)

9e-86

290) bscN
( YP_006625533.1 )

ATP synthase in type III secretion system

NC_018518
(Bordetella pertussis 18323)

9e-86

291) bscN
( YP_005590278.1 )

type III secretion system ATPase

NC_017223
(Bordetella pertussis CS)

9e-86

292) bscN
( NP_880888.1 )

type III secretion system ATPase

NC_002929
(Bordetella pertussis Tohama I)

9e-86

293) UWK_03076
( YP_007469258.1 )

type III secretion system ATPase, FliI/YscN

NC_020304
(Desulfocapsa sulfexigens DSM 10523)

9e-86

294) escN
( YP_003223475.1 )

translocator EscN

NC_013353
(Escherichia coli 12009)

1e-85

295) Spirs_1565
( YP_003803286.1 )

flagellar protein export ATPase FliI

NC_014364
(Spirochaeta smaragdinae DSM 11293)

1e-85

296) Thit_1232
( YP_003477058.1 )

flagellar protein export ATPase FliI

NC_013921
(Thermoanaerobacter italicus Ab9)

1e-85

297) Tmath_1283
( YP_003677009.1 )

flagellar protein export ATPase FliI

NC_014209
(Thermoanaerobacter mathranii A3)

1e-85

298) fliI
( YP_005230189.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_016848
(Treponema pallidum CDC2)

1e-85

299) fliI
( YP_005631285.1 )

flagellar protein export ATPase FliI

NC_017268
(Treponema pallidum Chicago)

1e-85

300) fliI
( YP_005223645.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_016844
(Treponema pallidum DAL-1)

1e-85

301) fliI
( YP_007936204.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_021179
(Treponema pallidum Fribourg-Blanc)

1e-85

302) fliI
( YP_005222581.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_016843
(Treponema pallidum Gauthier)

1e-85

303) TP0402
( NP_218842.1 )

flagellum-specific ATP synthase (fliI)

NC_000919
(Treponema pallidum Nichols)

1e-85

304) fliI
( YP_008091251.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_021490
(Treponema pallidum Nichols)

1e-85

305) fliI
( YP_005221512.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_016842
(Treponema pallidum SamoaD)

1e-85

306) Cphy_2714
( YP_001559814.1 )

flagellar protein export ATPase FliI

NC_010001
(Clostridium phytofermentans ISDg)

1e-85

307) escN
( YP_003232153.1 )

T3SS structure protein EscN

NC_013361
(Escherichia coli 11368)

2e-85

308) Tresu_1125
( YP_004365334.1 )

FliI/YscN family ATPase

NC_015385
(Treponema succinifaciens DSM 2489)

2e-85

309) Geob_0497
( YP_002535967.1 )

ATPase FliI/YscN

NC_011979
(Geobacter daltonii FRC-32)

2e-85

310) bscN
( NP_888173.1 )

type III secretion system ATPase

NC_002927
(Bordetella bronchiseptica RB50)

3e-85

311) BN117_1390
( YP_006895372.1 )

ATP synthase in type III secretion system

NC_018828
(Bordetella parapertussis Bpp5)

3e-85

312) MROS_2132
( YP_006528375.1 )

flagellum-specific ATP synthase FliI

NC_018178
(Melioribacter roseus P3M-2)

3e-85

313) Athe_2170
( YP_002574018.1 )

FliI/YscN family ATPase

NC_012034
(Caldicellulosiruptor bescii DSM 6725)

3e-85

314) fliI
( YP_006869723.1 )

IIISP family Type III (virulence-related) secretory pathway protein

NC_018722
(Treponema pallidum Mexico A)

3e-85

315) Gura_4210
( YP_001232926.1 )

flagellar protein export ATPase FliI

NC_009483
(Geobacter uraniireducens Rf4)

3e-85

316) GYMC10_4188
( YP_003244222.1 )

flagellar protein export ATPase FliI

NC_013406
(Paenibacillus sp. Y412MC10)

3e-85

317) sctN
( NP_296424.1 )

type III secretion cytoplasmic ATPase SctN

NC_002620
(Chlamydia muridarum Nigg)

4e-85

318) fliI
( YP_006889428.1 )

flagellum-specific ATPase FliI

NC_017454
(Geobacter sulfurreducens KN400)

4e-85

319) fliI
( NP_951472.1 )

flagellum-specific ATPase FliI

NC_002939
(Geobacter sulfurreducens PCA)

5e-85

320) fliI
( YP_006716906.1 )

flagellum-specific ATPase FliI

NC_007498
(Pelobacter carbinolicus DSM 2380)

5e-85

321) fliI
( NP_692479.1 )

flagellum-specific ATP synthase

NC_004193
(Oceanobacillus iheyensis HTE831)

5e-85

322) Calhy_0586
( YP_003991696.1 )

atpase, flii/yscn family

NC_014652
(Caldicellulosiruptor hydrothermalis 108)

6e-85

323) fliI
( YP_001920205.1 )

flagellar protein export ATPase FliI

NC_010723
(Clostridium botulinum Alaska E43)

1e-84

324) STHERM_c09130
( YP_003874133.1 )

hypothetical protein

NC_014484
(Spirochaeta thermophila DSM 6192)

1e-84

325) COB47_1951
( YP_003841204.1 )

FliI/YscN family ATPase

NC_014392
(Caldicellulosiruptor obsidiansis OB47)

1e-84

326) Ethha_2575
( YP_004092799.1 )

FliI/YscN family ATPase

NC_014828
(Ethanoligenens harbinense YUAN-3)

1e-84

327) NT01CX_1905
( YP_877978.1 )

flagellum-specific ATP synthase

NC_008593
(Clostridium novyi NT)

1e-84

328) Tmar_0981
( YP_004101821.1 )

type III secretion system ATPase, FliI/YscN

NC_014831
(Thermaerobacter marianensis DSM 12885)

7e-85

329) Desor_4887
( YP_004972803.1 )

flagellar protein export ATPase FliI

NC_016584
(Desulfosporosinus orientis DSM 765)

8e-85

330) H045_00170
( YP_007395606.1 )

type III secretion ATP synthase RscN

NC_020209
(Pseudomonas poae RE*1-1-14)

8e-85

331) GM18_4265
( YP_004200955.1 )

FliI/YscN family ATPase

NC_014973
(Geobacter sp. M18)

8e-85

332) Spith_0938
( YP_006044929.1 )

FliI/YscN family ATPase

NC_017583
(Spirochaeta thermophila DSM 6578)

9e-85

333) Calkro_0465
( YP_004023184.1 )

atpase, flii/yscn family

NC_014720
(Caldicellulosiruptor kronotskyensis 2002)

1e-84

334) fliL
( NP_348777.1 )

flagellar-Type ATPase

NC_003030
(Clostridium acetobutylicum ATCC 824)

2e-84

335) fliI
( YP_004636823.1 )

flagellar-type ATPase

NC_015687
(Clostridium acetobutylicum DSM 1731)

2e-84

336) CEA_G2173
( YP_005671305.1 )

Flagellar-Type ATPase

NC_017295
(Clostridium acetobutylicum EA 2018)

2e-84

337) bscN
( NP_884482.1 )

type III secretion system ATPase

NC_002928
(Bordetella parapertussis 12822)

3e-84

338) Calkr_0409
( YP_004025573.1 )

atpase, flii/yscn family

NC_014721
(Caldicellulosiruptor kristjanssonii 177R1B)

3e-84

339) Calla_1952
( YP_004799503.1 )

flagellar protein export ATPase FliI

NC_015949
(Caldicellulosiruptor lactoaceticus 6A)

3e-84

340) PSEBR_a5386
( YP_004356896.1 )

type III secretion protein

NC_015379
(Pseudomonas brassicacearum NFM421)

3e-84

341) PM3016_5159
( YP_005315028.1 )

protein FliI

NC_016935
(Paenibacillus mucilaginosus 3016)

3e-84

342) fliI
( YP_006192001.1 )

ATP synthase

NC_017672
(Paenibacillus mucilaginosus K02)

3e-84

343) fliI
( NP_870547.1 )

flagellum-specific ATP synthase

NC_005027
(Rhodopirellula baltica SH 1)

3e-84

344) FliI
( YP_001212635.1 )

flagellar biosynthesis/type III secretory pathway ATPase

NC_009454
(Pelotomaculum thermopropionicum SI)

4e-84

345) Desaci_3824
( YP_006468037.1 )

type III secretion system ATPase, FliI/YscN

NC_018068
(Desulfosporosinus acidiphilus SJ4)

4e-84

346) CPE3_0037
( YP_008583208.1 )

type III secretion ATPase

NC_022441
(Chlamydia pecorum P787)

6e-84

347) CPE1_0037
( YP_008581362.1 )

type III secretion system ATPase

NC_022439
(Chlamydia pecorum PV3056/3)

6e-84

348) CPE2_0037
( YP_008582283.1 )

type III secretion system ATPase

NC_022440
(Chlamydia pecorum W73)

6e-84

349) G5S_0335
( YP_004377044.1 )

type III secretion cytoplasmic ATPase SctN

NC_015408
(Chlamydophila pecorum E58)

6e-84

350) Meso_0107
( YP_672677.1 )

FliI/YscN family ATPase

NC_008254
(Chelativorans sp. BNC1)

6e-84

351) Desru_1241
( YP_004544801.1 )

FliI/YscN family ATPase

NC_015589
(Desulfotomaculum ruminis DSM 2154)

7e-84

352) fliI
( YP_001697281.1 )

flagellum-specific ATP synthase

NC_010382
(Lysinibacillus sphaericus C3-41)

7e-84

353) fliI
( YP_175762.1 )

flagellum-specific ATP synthase

NC_006582
(Bacillus clausii KSM-K16)

8e-84

354) fliI
( YP_001885044.1 )

flagellar protein export ATPase FliI

NC_010674
(Clostridium botulinum Eklund 17B)

1e-83

355) GM21_3919
( YP_003023694.1 )

FliI/YscN family ATPase

NC_012918
(Geobacter sp. M21)

1e-83

356) fliI
( YP_004832786.1 )

flagellum specific ATP synthase

NC_015975
(Lactobacillus ruminis ATCC 27782)

1e-83

357) fliI
( YP_004644211.1 )

protein FliI

NC_015690
(Paenibacillus mucilaginosus KNP414)

1e-83

358) Hore_16860
( YP_002509431.1 )

flagellar protein export ATPase FliI

NC_011899
(Halothermothrix orenii H 168)

2e-83

359) TepRe1_1222
( YP_004460675.1 )

flagellar protein export ATPase FliI

NC_015519
(Tepidanaerobacter acetatoxydans Re1)

2e-83

360) fliI
( YP_008618897.1 )

flagellar-specific ATPase

NC_019954
(Tepidanaerobacter acetatoxydans Re1)

2e-83

361) fliI
( NP_243321.1 )

flagellum-specific ATP synthase

NC_002570
(Bacillus halodurans C-125)

2e-83

362) fliI
( YP_006722060.1 )

flagellum-specific ATPase FliI

NC_007517
(Geobacter metallireducens GS-15)

2e-83

363) Clocel_1717
( YP_003843225.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_014393
(Clostridium cellulovorans 743B)

3e-83

364) REMIM1_PE00269
( YP_008368023.1 )

type III secretion system FliI/YscN family ATP synthase protein

NC_021909
(Rhizobium etli Mim1)

4e-83

365) Dred_2405
( YP_001113740.1 )

flagellar protein export ATPase FliI

NC_009253
(Desulfotomaculum reducens MI-1)

4e-83

366) fliI
( YP_076827.1 )

flagellar-specific ATP synthase

NC_006177
(Symbiobacterium thermophilum IAM 14863)

4e-83

367) fliI
( YP_006557348.1 )

flagellum-specific ATP synthase

NC_018268
(Marinobacter sp. BSs20148)

4e-83

368) fliI
( YP_002140623.1 )

flagellum-specific ATPase FliI

NC_011146
(Geobacter bemidjiensis Bem)

4e-83

369) fliI
( YP_001680791.1 )

flagellar protein export ATPase flii

NC_010337
(Heliobacterium modesticaldum Ice1)

5e-83

370) ROI_20930
( YP_007832158.1 )

type III secretion system ATPase, FliI/YscN

NC_021040
(Roseburia intestinalis M50/1)

6e-83

371) Calni_1784
( YP_004051852.1 )

type III secretion system atpase, flii/yscn

NC_014758
(Calditerrivibrio nitroreducens DSM 19672)

6e-83

372) hscN
( YP_003811263.1 )

type III secretion system ATPase

NC_014366
(gamma proteobacterium HdN1)

7e-83

373) rscN
( YP_006322227.1 )

type III secretion ATP synthase RscN

NC_017911
(Pseudomonas fluorescens A506)

7e-83

374) Ppro_3429
( YP_903079.1 )

flagellar protein export ATPase FliI

NC_008609
(Pelobacter propionicus DSM 2379)

7e-83

375) fliI
( YP_006463563.1 )

flagellar biosynthesis/type III secretory pathway ATPase

NC_018065
(Solibacillus silvestris StLB046)

7e-83

376) Mmc1_0272
( YP_864205.1 )

flagellar protein export ATPase FliI

NC_008576
(Magnetococcus marinus MC-1)

9e-83

377) fliI
( YP_005327832.1 )

flagellum-specific ATP synthase

NC_016943
(Blastococcus saxobsidens DD2)

1e-82

378) Thein_1815
( YP_004626634.1 )

ATPase, FliI/YscN family

NC_015681
(Thermodesulfatator indicus DSM 15286)

1e-82

379) fliI
( YP_004777537.1 )

flagellar protein export ATPase FliI

NC_015921
(Borrelia bissettii DN127)

2e-82

380) Hprae_0546
( YP_005835860.1 )

type III secretion system ATPase, FliI/YscN

NC_017455
(Halanaerobium praevalens DSM 2228)

2e-82

381) Clole_2457
( YP_004309361.1 )

FliI/YscN family ATPase

NC_015275
(Clostridium lentocellum DSM 5427)

2e-82

382) fliI
( YP_004375667.1 )

flagellum-specific ATP synthase

NC_015391
(Carnobacterium sp. 17-4)

2e-82

383) hrcN
( YP_005210973.1 )

protein HrcN

NC_016830
(Pseudomonas fluorescens F113)

3e-82

384) RO1_09360
( YP_007777386.1 )

type III secretion system ATPase, FliI/YscN

NC_021012
(Roseburia intestinalis XB6B4)

3e-82

385) Glov_3301
( YP_001953527.1 )

flagellar protein export ATPase FliI

NC_010814
(Geobacter lovleyi SZ)

3e-82

386) Hipma_1198
( YP_004340219.1 )

FliI/YscN family ATPase

NC_015318
(Hippea maritima DSM 10411)

7e-82

387) fliI
( YP_004530526.1 )

flagellar protein export ATPase FliI

NC_015578
(Treponema primitia ZAS-2)

1e-81

388) RHOM_06955
( YP_004838438.1 )

Na+-transporting two-sector ATPase

NC_015977
(Roseburia hominis A2-183)

7e-82

389) Pmob_1376
( YP_001568403.1 )

flagellar protein export ATPase FliI

NC_010003
(Petrotoga mobilis SJ95)

8e-82

390) fliI
( YP_002221949.1 )

flagellum-specific ATP synthase

NC_011229
(Borrelia duttonii Ly)

1e-81

391) HP15_2323
( YP_005886015.1 )

flagellum-specific ATP synthase FliI

NC_017506
(Marinobacter adhaerens HP15)

2e-81

392) fliI
( YP_959262.1 )

flagellum-specific ATP synthase

NC_008740
(Marinobacter aquaeolei VT8)

2e-81

393) fliI
( YP_005429211.1 )

flagellum-specific ATP synthase

NC_017067
(Marinobacter hydrocarbonoclasticus ATCC 49840)

2e-81

394) Q7A_2368
( YP_006296813.1 )

flagellum-specific ATP synthase FliI

NC_017857
(Methylophaga sp. JAM1)

2e-81

395) Marme_3235
( YP_004314287.1 )

flagellar protein export ATPase FliI

NC_015276
(Marinomonas mediterranea MMB-1)

2e-81

396) Tlet_1901
( YP_001471519.1 )

flagellar protein export ATPase FliI

NC_009828
(Thermotoga lettingae TMO)

2e-81

397) fliI
( YP_006202981.1 )

Flagellum-specific ATP synthase

NC_017717
(Borrelia garinii BgVir)

2e-81

398) Q7M_294
( YP_006272225.1 )

Flagellum-specific ATP synthase

NC_017808
(Borrelia crocidurae Achema)

2e-81

399) CTC01673
( NP_782272.1 )

flagellum-specific ATP synthase

NC_004557
(Clostridium tetani E88)

3e-81

400) MXAN_2442
( YP_630662.1 )

FliI/YscN family ATPase

NC_008095
(Myxococcus xanthus DK 1622)

3e-81

401) DP2659
( YP_066395.1 )

flagellum-specific ATP synthase (FliI)

NC_006138
(Desulfotalea psychrophila LSv54)

3e-81

402) fliI
( YP_008415451.1 )

ATP synthase

NC_022079
(Borrelia miyamotoi LB-2001)

3e-81

403) Dacet_2311
( YP_003505029.1 )

flagellar protein export ATPase FliI

NC_013943
(Denitrovibrio acetiphilus DSM 12809)

4e-81

404) fliI
( YP_005206985.1 )

protein FliI

NC_016830
(Pseudomonas fluorescens F113)

6e-81

405) fliI
( NP_212422.1 )

flagellum-specific ATP synthase FliI

NC_001318
(Borrelia burgdorferi B31)

7e-81

406) L144_01420
( YP_008407472.1 )

flagellar protein export ATPase FliI

NC_022048
(Borrelia burgdorferi CA382)

7e-81

407) fliI
( YP_005805395.1 )

flagellar protein export ATPase FliI

NC_017403
(Borrelia burgdorferi JD1)

7e-81

408) fliI
( YP_005806486.1 )

flagellar protein export ATPase FliI

NC_017418
(Borrelia burgdorferi N40)

7e-81

409) fliI
( YP_072736.1 )

flagellum-specific ATP synthase

NC_006156
(Borrelia garinii PBi)

7e-81

410) PSEBR_a1481
( YP_004352680.1 )

flagellum-specific ATP synthase

NC_015379
(Pseudomonas brassicacearum NFM421)

8e-81

411) LILAB_19900
( YP_004666960.1 )

FliI/YscN family ATPase

NC_015711
(Myxococcus fulvus HW-1)

8e-81

412) fliI
( YP_002374811.1 )

flagellar protein export ATPase FliI

NC_011728
(Borrelia burgdorferi ZS7)

8e-81

413) fliI
( YP_002759840.1 )

flagellum-specific ATP synthase

NC_012489
(Gemmatimonas aurantiaca T-27)

2e-80

414) Closa_3466
( YP_003823615.1 )

FliI/YscN family ATPase

NC_014376
(Clostridium saccharolyticum WM1)

2e-80

415) BH0288
( YP_001883725.1 )

flagellum-specific ATP synthase

NC_010673
(Borrelia hermsii DAH)

2e-80

416) fliI
( YP_002222763.1 )

flagellum-specific ATP synthase

NC_011244
(Borrelia recurrentis A1)

2e-80

417) Cbei_4265
( YP_001311331.1 )

flagellar protein export ATPase FliI

NC_009617
(Clostridium beijerinckii NCIMB 8052)

2e-80

418) BgCN_0293
( YP_006870984.1 )

flagellum-specific ATP synthase

NC_018747
(Borrelia garinii NMJW1)

3e-80

419) BT0288
( YP_945296.1 )

flagellum-specific ATP synthase

NC_008710
(Borrelia turicatae 91E135)

3e-80

420) fliI
( YP_347271.1 )

flagellum-specific ATP synthase

NC_007492
(Pseudomonas fluorescens Pf0-1)

4e-80

421) fliI
( YP_007457526.1 )

flagellum-specific ATP synthase FliI

NC_020291
(Clostridium saccharoperbutylacetonicum N1-4(HMT))

5e-80

422) fliI
( YP_007998971.1 )

flagellum-specific ATP synthase FliI

NC_021237
(Pseudomonas fluorescens CHA0)

6e-80

423) fliI
( YP_258767.1 )

flagellum-specific ATP synthase

NC_004129
(Pseudomonas protegens Pf-5)

6e-80

424) fliI
( YP_008104335.1 )

flagellum-specific ATP synthase FliI

NC_021499
(Pseudomonas resinovorans NBRC 106553)

6e-80

425) fliI
( YP_003213316.1 )

flagellum-specific ATP synthase

NC_013315
(Clostridium difficile CD196)

6e-80

426) fliI
( YP_003216762.1 )

flagellum-specific ATP synthase

NC_013316
(Clostridium difficile R20291)

6e-80

427) SYN_01473
( YP_461022.1 )

flagellum-specific ATP synthase

NC_007759
(Syntrophus aciditrophicus SB)

6e-80

428) Psta_4343
( YP_003372850.1 )

FliI/YscN family ATPase

NC_013720
(Pirellula staleyi DSM 6068)

7e-80

429) Acid_0343
( YP_821640.1 )

FliI/YscN family ATPase

NC_008536
(Candidatus Solibacter usitatus Ellin6076)

8e-80

430) fliI
( YP_001086719.1 )

ATP synthase subunit beta FliI

NC_009089
(Clostridium difficile 630)

8e-80

431) fliI
( YP_008468118.1 )

ATP synthase

NC_022119
(Chlamydia trachomatis D/13-96)

1e-79

432) SOTOND1_00711
( YP_007733311.1 )

type III secretion system ATPase

NC_020967
(Chlamydia trachomatis D/SotonD1)

1e-79

433) CCALI_01244
( YP_008089184.1 )

type III secretion system ATPase, FliI/YscN

NC_021487
(Chthonomonas calidirosea T49)

1e-79

434) EUBELI_00811
( YP_002930266.1 )

Na+-transporting two-sector ATPase

NC_012778
(Eubacterium eligens ATCC 27750)

1e-79

435) lfiI
( YP_001140288.1 )

lateral flagellar FliI-like assembly ATPase

NC_009348
(Aeromonas salmonicida A449)

1e-79

436) fliI
( YP_005592506.1 )

flagellar protein export ATPase FliI

NC_017238
(Borrelia afzelii PKo)

1e-79

437) fliI
( YP_007657192.1 )

flagellum-specific ATP synthase

NC_020829
(Pseudomonas denitrificans ATCC 13867)

2e-79

438) fliI
( YP_007398180.1 )

flagellum-specific ATP synthase

NC_020209
(Pseudomonas poae RE*1-1-14)

2e-79

439) GU3_14055
( YP_005093314.1 )

lateral flagellar FliI-like assembly ATPase protein

NC_016745
(Oceanimonas sp. GK1)

2e-79

440) Cwoe_0041
( YP_003391852.1 )

flagellar protein export ATPase FliI

NC_013739
(Conexibacter woesei DSM 14684)

2e-79

441) fliI
( YP_006762444.1 )

flagellum-specific ATP synthase FliI

NC_018645
(Desulfobacula toluolica Tol2)

2e-79

442) A363_00718
( YP_007732418.1 )

type III secretion system ATPase

NC_020966
(Chlamydia trachomatis A/363)

2e-79

443) A5291_00717
( YP_007724229.1 )

type III secretion system ATPase

NC_020939
(Chlamydia trachomatis A/5291)

2e-79

444) A7249_00716
( YP_007728701.1 )

type III secretion system ATPase

NC_020944
(Chlamydia trachomatis A/7249)

2e-79

445) sctN
( YP_328495.1 )

type III secretion system ATPase

NC_007429
(Chlamydia trachomatis A/HAR-13)

2e-79

446) sctN
( YP_005156505.1 )

ATP synthase

NC_016798
(Chlamydia trachomatis A2497)

2e-79

447) CTO_0726
( YP_005813553.1 )

SctN

NC_017437
(Chlamydia trachomatis A2497)

2e-79

448) sctN
( YP_002889174.1 )

type III secretion system ATPase

NC_012687
(Chlamydia trachomatis B/TZ1A828/OT)

2e-79

449) fliI
( YP_008443737.1 )

ATP synthase

NC_022110
(Chlamydia trachomatis J/27-97)

2e-79

450) sctN
( YP_002888293.1 )

type III secretion system ATPase

NC_012686
(Chlamydia trachomatis Jali20)

2e-79

451) BN356_0371
( YP_006973964.1 )

putative type III secretion or flagellar-type ATP synthase

NC_019391
(Chlamydia psittaci 01DC12)

3e-79

452) G5O_0045
( YP_005662731.1 )

type III secretion cytoplasmic ATPase SctN

NC_017287
(Chlamydia psittaci 6BC)

3e-79

453) AO9_00175
( YP_007437756.1 )

type III secretion system ATPase

NC_020248
(Chlamydia psittaci Mat116)

3e-79

454) B712_0041
( YP_006740139.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018626
(Chlamydia psittaci NJ1)

3e-79

455) Cpsi_0431
( YP_004064027.1 )

putative type III secretion or flagellar-type ATP synthase

NC_014796
(Chlamydia psittaci RD1)

3e-79

456) B600_0044
( YP_006734787.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018621
(Chlamydia psittaci VS225)

3e-79

457) sctN
( YP_001654129.1 )

type III secretion system ATPase

NC_010287
(Chlamydia trachomatis 434/Bu)

3e-79

458) sctN
( YP_005811723.1 )

SctN

NC_017434
(Chlamydia trachomatis D-EC)

3e-79

459) sctN
( YP_005812601.1 )

SctN

NC_017436
(Chlamydia trachomatis D-LC)

3e-79

460) fliI
( YP_008442819.1 )

ATP synthase

NC_022109
(Chlamydia trachomatis D/14-96)

3e-79

461) SOTOND5_00709
( YP_007727803.1 )

type III secretion system ATPase

NC_020943
(Chlamydia trachomatis D/SotonD5)

3e-79

462) SOTOND6_00709
( YP_007734203.1 )

type III secretion system ATPase

NC_020968
(Chlamydia trachomatis D/SotonD6)

3e-79

463) yscN
( NP_220188.1 )

type III secretion system ATPase

NC_000117
(Chlamydia trachomatis D/UW-3/CX)

3e-79

464) E11023_03530
( YP_005809898.1 )

type III secretion system ATPase

NC_017431
(Chlamydia trachomatis E/11023)

3e-79

465) fliI
( YP_008441900.1 )

ATP synthase

NC_022108
(Chlamydia trachomatis E/12-94)

3e-79

466) E150_03560
( YP_005814490.1 )

type III secretion system ATPase

NC_017439
(Chlamydia trachomatis E/150)

3e-79

467) BOUR_00713
( YP_007736885.1 )

type III secretion system ATPase

NC_020971
(Chlamydia trachomatis E/Bour)

3e-79

468) SOTONE4_00708
( YP_007735093.1 )

type III secretion system ATPase

NC_020969
(Chlamydia trachomatis E/SotonE4)

3e-79

469) SOTONE8_00714
( YP_007726911.1 )

type III secretion system ATPase

NC_020942
(Chlamydia trachomatis E/SotonE8)

3e-79

470) sctN
( YP_006361481.1 )

ATP synthase

NC_017952
(Chlamydia trachomatis E/SW3)

3e-79

471) fliI
( YP_008466259.1 )

ATP synthase

NC_022117
(Chlamydia trachomatis F/1-93)

3e-79

472) fliI
( YP_008440980.1 )

ATP synthase

NC_022107
(Chlamydia trachomatis F/11-96)

3e-79

473) fliI
( YP_008440053.1 )

ATP synthase

NC_022106
(Chlamydia trachomatis F/2-93)

3e-79

474) fliI
( YP_008467186.1 )

ATP synthase

NC_022118
(Chlamydia trachomatis F/6-94)

3e-79

475) SOTONF3_00708
( YP_007730624.1 )

type III secretion system ATPase

NC_020964
(Chlamydia trachomatis F/SotonF3)

3e-79

476) sctN
( YP_006360606.1 )

ATP synthase

NC_017951
(Chlamydia trachomatis F/SW4)

3e-79

477) sctN
( YP_006362356.1 )

ATP synthase

NC_017953
(Chlamydia trachomatis F/SW5)

3e-79

478) G11074_03530
( YP_005815413.1 )

type III secretion system ATPase

NC_017440
(Chlamydia trachomatis G/11074)

3e-79

479) G11222_03550
( YP_005808971.1 )

type III secretion system ATPase

NC_017430
(Chlamydia trachomatis G/11222)

3e-79

480) CTG9301_03540
( YP_005810822.1 )

type III secretion system ATPase

NC_017432
(Chlamydia trachomatis G/9301)

3e-79

481) G9768_03530
( YP_005808047.1 )

type III secretion system ATPase

NC_017429
(Chlamydia trachomatis G/9768)

3e-79

482) SOTONG1_00709
( YP_007726014.1 )

type III secretion system ATPase

NC_020941
(Chlamydia trachomatis G/SotonG1)

3e-79

483) SOTONIA1_00712
( YP_007735990.1 )

type III secretion system ATPase

NC_020970
(Chlamydia trachomatis Ia/SotonIa1)

3e-79

484) SOTONIA3_00712
( YP_007725123.1 )

type III secretion system ATPase

NC_020940
(Chlamydia trachomatis Ia/SotonIa3)

3e-79

485) fliI
( YP_008469045.1 )

ATP synthase

NC_022120
(Chlamydia trachomatis Ia20-97)

3e-79

486) sctN
( YP_007540369.1 )

ATP synthase (predicted TTSS protein)

NC_020511
(Chlamydia trachomatis IU824)

3e-79

487) sctN
( YP_007541245.1 )

ATP synthase (predicted TTSS protein)

NC_020512
(Chlamydia trachomatis IU888)

3e-79

488) fliI
( YP_008469969.1 )

ATP synthase

NC_022121
(Chlamydia trachomatis J/31-98)

3e-79

489) CTJTET1_03570
( YP_008349398.1 )

type III secretion system ATPase

NC_021892
(Chlamydia trachomatis J/6276tet1)

3e-79

490) SOTONK1_00709
( YP_007731517.1 )

type III secretion system ATPase

NC_020965
(Chlamydia trachomatis K/SotonK1)

3e-79

491) L1115_00704
( YP_007715308.1 )

type III secretion system ATPase

NC_020929
(Chlamydia trachomatis L1/115)

3e-79

492) L11322_00704
( YP_007737772.1 )

type III secretion system ATPase

NC_020972
(Chlamydia trachomatis L1/1322/p2)

3e-79

493) L1224_00704
( YP_007738662.1 )

type III secretion system ATPase

NC_020973
(Chlamydia trachomatis L1/224)

3e-79

494) L1440_00707
( YP_007722437.1 )

type III secretion system ATPase

NC_020937
(Chlamydia trachomatis L1/440/LN)

3e-79

495) L225667R_00706
( YP_007716199.1 )

type III secretion system ATPase

NC_020930
(Chlamydia trachomatis L2/25667R)

3e-79

496) CTLFINAL_00205
( YP_007851984.1 )

type III secretion system ATPase

NC_021052
(Chlamydia trachomatis L2/434/Bu(f))

3e-79

497) CTLINITIAL_00205
( YP_007851044.1 )

type III secretion system ATPase

NC_021050
(Chlamydia trachomatis L2/434/Bu(i))

3e-79

498) L2B795_00704
( YP_007723326.1 )

type III secretion system ATPase

NC_020938
(Chlamydia trachomatis L2b/795)

3e-79

499) L2B8200_00703
( YP_007729586.1 )

type III secretion system ATPase

NC_020945
(Chlamydia trachomatis L2b/8200/07)

3e-79

500) L2BAMS1_00703
( YP_007718868.1 )

type III secretion system ATPase

NC_020933
(Chlamydia trachomatis L2b/Ams1)

3e-79

501) L2BAMS2_00703
( YP_007719758.1 )

type III secretion system ATPase

NC_020934
(Chlamydia trachomatis L2b/Ams2)

3e-79

502) L2BAMS3_00703
( YP_007742219.1 )

type III secretion system ATPase

NC_020977
(Chlamydia trachomatis L2b/Ams3)

3e-79

503) L2BAMS4_00704
( YP_007743110.1 )

type III secretion system ATPase

NC_020978
(Chlamydia trachomatis L2b/Ams4)

3e-79

504) L2BAMS5_00704
( YP_007721544.1 )

type III secretion system ATPase

NC_020936
(Chlamydia trachomatis L2b/Ams5)

3e-79

505) L2BCAN1_00705
( YP_007720650.1 )

type III secretion system ATPase

NC_020935
(Chlamydia trachomatis L2b/Canada1)

3e-79

506) L2BCAN2_00704
( YP_007717977.1 )

type III secretion system ATPase

NC_020932
(Chlamydia trachomatis L2b/Canada2)

3e-79

507) L2BCV204_00703
( YP_007741329.1 )

type III secretion system ATPase

NC_020976
(Chlamydia trachomatis L2b/CV204)

3e-79

508) L2BLST_00703
( YP_007740439.1 )

type III secretion system ATPase

NC_020975
(Chlamydia trachomatis L2b/LST)

3e-79

509) L2BUCH2_00703
( YP_007717086.1 )

type III secretion system ATPase

NC_020931
(Chlamydia trachomatis L2b/UCH-2)

3e-79

510) L3404_00704
( YP_007739552.1 )

type III secretion system ATPase

NC_020974
(Chlamydia trachomatis L3/404/LN)

3e-79

511) CTRC342_03595
( YP_008347508.1 )

type III secretion system ATPase

NC_021890
(Chlamydia trachomatis RC-F(s)/342)

3e-79

512) CTRC852_03610
( YP_008345635.1 )

type III secretion system ATPase

NC_021888
(Chlamydia trachomatis RC-F(s)/852)

3e-79

513) CTRC69_03565
( YP_008351486.1 )

type III secretion system ATPase

NC_021895
(Chlamydia trachomatis RC-F/69)

3e-79

514) CTRC122_03570
( YP_008348453.1 )

type III secretion system ATPase

NC_021891
(Chlamydia trachomatis RC-J(s)/122)

3e-79

515) CTRC943_03525
( YP_008352410.1 )

type III secretion system ATPase

NC_021896
(Chlamydia trachomatis RC-J/943)

3e-79

516) CTRC953_03525
( YP_008346587.1 )

type III secretion system ATPase

NC_021889
(Chlamydia trachomatis RC-J/953)

3e-79

517) CTRC966_03535
( YP_008354256.1 )

type III secretion system ATPase

NC_021898
(Chlamydia trachomatis RC-J/966)

3e-79

518) CTRC971_03545
( YP_008355182.1 )

type III secretion system ATPase

NC_021899
(Chlamydia trachomatis RC-J/971)

3e-79

519) CTRC3_03575
( YP_008353333.1 )

type III secretion system ATPase

NC_021897
(Chlamydia trachomatis RC-L2(s)/3)

3e-79

520) CTRC46_03545
( YP_008344712.1 )

type III secretion system ATPase

NC_021887
(Chlamydia trachomatis RC-L2(s)/46)

3e-79

521) CTRC55_03545
( YP_008350356.1 )

type III secretion system ATPase

NC_021893
(Chlamydia trachomatis RC-L2/55)

3e-79

522) sctN
( YP_005816304.1 )

ATP synthase

NC_017441
(Chlamydia trachomatis Sweden2)

3e-79

523) sctN
( YP_001653141.1 )

type III secretion system ATPase

NC_010280
(Chlamydia trachomatis UCH-1)

3e-79

524) CP0039
( NP_444591.1 )

type III secretion system ATPase

NC_002179
(Chlamydophila pneumoniae AR39)

3e-79

525) yscN
( NP_224903.1 )

type III secretion system ATPase

NC_000922
(Chlamydophila pneumoniae CWL029)

3e-79

526) yscN
( NP_300763.1 )

type III secretion system ATPase

NC_002491
(Chlamydophila pneumoniae J138)

3e-79

527) CPK_ORF00111
( YP_005661630.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_017285
(Chlamydophila pneumoniae LPCoLN)

3e-79

528) yopN
( NP_877006.1 )

type III secretion system ATPase

NC_005043
(Chlamydophila pneumoniae TW-183)

3e-79

529) Noca_0756
( YP_921968.1 )

FliI/YscN family ATPase

NC_008699
(Nocardioides sp. JS614)

3e-79

530) Ser39006_2915
( YP_008523297.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_022268
(Serratia sp. ATCC 39006)

4e-79

531) sctN
( NP_828909.1 )

type III secretion system ATPase

NC_003361
(Chlamydophila caviae GPIC)

4e-79

532) fliI
( YP_005270104.1 )

flagellum-specific ATP synthase FliI

NC_016894
(Acetobacterium woodii DSM 1030)

4e-79

533) fliI
( YP_236524.1 )

flagellum-specific ATP synthase

NC_007005
(Pseudomonas syringae B728a)

5e-79

534) fliI
( YP_003495775.1 )

flagellar-specific ATP synthase FliI

NC_013939
(Deferribacter desulfuricans SSM1)

5e-79

535) Dvul_2988
( YP_961187.1 )

type III secretion system ATPase

NC_008741
(Desulfovibrio vulgaris DP4)

6e-79

536) DVUA0119
( YP_009159.1 )

type III secretion system ATPase

NC_005863
(Desulfovibrio vulgaris Hildenborough)

6e-79

537) Deval_3220
( YP_005703999.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_017311
(Desulfovibrio vulgaris RCH1)

6e-79

538) fliI
( YP_007030872.1 )

flagellum-specific ATP synthase

NC_019670
(Pseudomonas sp. UW4)

6e-79

539) hrcN
( YP_050178.1 )

type III secretion system protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

6e-79

540) fliI
( YP_008238077.1 )

Flagellum-specific ATP synthase FliI

NC_021745
(Ralstonia solanacearum FQY_4)

1e-78

541) hrcN
( NP_522431.1 )

type III secretion system ATPase

NC_003296
(Ralstonia solanacearum GMI1000)

1e-78

542) Sde_2185
( YP_527657.1 )

ATPase FliI/YscN

NC_007912
(Saccharophagus degradans 2-40)

1e-78

543) fliI
( YP_006325184.1 )

flagellum-specific ATP synthase FliI

NC_017911
(Pseudomonas fluorescens A506)

7e-79

544) fliI
( NP_791784.1 )

flagellum-specific ATP synthase FliI

NC_004578
(Pseudomonas syringae DC3000)

8e-79

545) fliI
( YP_002873969.1 )

flagellum-specific ATP synthase

NC_012660
(Pseudomonas fluorescens SBW25)

8e-79

546) fliI
( YP_006523598.1 )

flagellum-specific ATP synthase

NC_018177
(Pseudomonas stutzeri DSM 10701)

8e-79

547) CAB036
( YP_219468.1 )

type III secretion system ATPase

NC_004552
(Chlamydophila abortus S26/3)

8e-79

548) DaAHT2_1185
( YP_003690502.1 )

flagellar protein export ATPase FliI

NC_014216
(Desulfurivibrio alkaliphilus AHT2)

9e-79

549) hrcN
( YP_003749790.1 )

type III secretion system ATPase

NC_014310
(Ralstonia solanacearum PSI07)

1e-78

550) Krad_1653
( YP_001361403.1 )

FliI/YscN family ATPase

NC_009664
(Kineococcus radiotolerans SRS30216)

2e-78

551) rhcN
( YP_006575329.1 )

ATPase RhcN for type III secretion

NC_018294
(Sinorhizobium fredii HH103)

2e-78

552) Q7C_2350
( YP_006294171.1 )

flagellum-specific ATP synthase FliI

NC_017856
(Methylophaga sp. JAM7)

2e-78

553) fliI
( YP_275538.1 )

flagellum-specific ATP synthase

NC_005773
(Pseudomonas syringae 1448A)

2e-78

554) fliI
( YP_001173079.1 )

flagellum-specific ATP synthase

NC_009434
(Pseudomonas stutzeri A1501)

2e-78

555) fliI
( YP_005467365.1 )

putative flagellum-specific ATP synthase

NC_017093
(Actinoplanes missouriensis 431)

3e-78

556) fliI
( YP_004714940.1 )

flagellum-specific ATP synthase

NC_015740
(Pseudomonas stutzeri ATCC 17588)

3e-78

557) fliI
( YP_006458394.1 )

flagellum-specific ATP synthase

NC_018028
(Pseudomonas stutzeri CCUG 29243)

3e-78

558) fliI
( YP_005939318.1 )

flagellum-specific ATP synthase

NC_017532
(Pseudomonas stutzeri DSM 4166)

3e-78

559) fliI1
( YP_515887.1 )

type III secretion system ATPase

NC_007899
(Chlamydophila felis Fe/C-56)

3e-78

560) Dret_0572
( YP_003197447.1 )

flagellar protein export ATPase FliI

NC_013223
(Desulfohalobium retbaense DSM 5692)

3e-78

561) Gobs_0975
( YP_003408107.1 )

flagellar protein export ATPase FliI

NC_013757
(Geodermatophilus obscurus DSM 43160)

3e-78

562) fliI1
( YP_435213.1 )

flagellum-specific ATP synthase

NC_007645
(Hahella chejuensis KCTC 2396)

3e-78

563) sctN
( YP_004022622.1 )

type III secretion cytoplasmic ATPase SctN

NC_014718
(Burkholderia rhizoxinica HKI 454)

4e-78

564) Thimo_0273
( YP_007242773.1 )

flagellar protein export ATPase FliI

NC_019940
(Thioflavicoccus mobilis 8321)

4e-78

565) fliI
( YP_008034701.1 )

flagellum-specific ATP synthase

NC_021286
(Idiomarina loihiensis GSL 199)

6e-78

566) fliI
( YP_155586.1 )

flagellum-specific ATP synthase

NC_006512
(Idiomarina loihiensis L2TR)

6e-78

567) fliI
( YP_001188309.1 )

flagellum-specific ATP synthase

NC_009439
(Pseudomonas mendocina ymp)

1e-77

568) Psest_1722
( YP_007239901.1 )

flagellar protein export ATPase FliI

NC_019936
(Pseudomonas stutzeri RCH2)

7e-78

569) L083_7699
( YP_007955689.1 )

FliI/YscN family ATPase

NC_021191
(Actinoplanes sp. N902-109)

8e-78

570) CK3_10900
( YP_007823317.1 )

type III secretion system ATPase, FliI/YscN

NC_021035
(butyrate-producing bacterium SS3/4)

8e-78

571) Marme_1076
( YP_004312187.1 )

FliI/YscN family ATPase

NC_015276
(Marinomonas mediterranea MMB-1)

8e-78

572) Turpa_4026
( YP_006442166.1 )

type III secretion system ATPase, FliI/YscN

NC_018020
(Turneriella parva DSM 21527)

8e-78

573) rhcN
( YP_002824493.1 )

type III secretion component, RhcN, ATP synthase

NC_012586
(Sinorhizobium fredii NGR234)

9e-78

574) HrcN
( YP_234305.1 )

type III secretion cytoplasmic ATPase HrcN

NC_007005
(Pseudomonas syringae B728a)

1e-77

575) fliI
( YP_001750542.1 )

flagellum-specific ATP synthase

NC_010501
(Pseudomonas putida W619)

1e-77

576) hrcN
( YP_006032361.1 )

hrp protein hrcn

NC_017575
(Ralstonia solanacearum Po82)

1e-77

577) Nther_1394
( YP_001917565.1 )

type III secretion system ATPase, FliI/YscN

NC_010718
(Natranaerobius thermophilus JW/NM-WN-LF)

1e-77

578) fliI
( YP_002248118.1 )

flagellar protein export ATPase FliI

NC_011296
(Thermodesulfovibrio yellowstonii DSM 11347)

1e-77

579) Swol_0852
( YP_753541.1 )

Sodium-transporting two-sector ATPase

NC_008346
(Syntrophomonas wolfei Goettingen)

1e-77

580) fliI
( YP_008331760.1 )

flagellum-specific ATP synthase

NC_021878
(Arcobacter butzleri 7h1h)

1e-77

581) ABED_1749
( YP_005539276.1 )

flagellum-specific ATP synthase

NC_017187
(Arcobacter butzleri ED-1)

1e-77

582) fliI
( YP_001490832.1 )

flagellum-specific ATP synthase

NC_009850
(Arcobacter butzleri RM4018)

1e-77

583) fliI
( YP_004872452.1 )

flagellum-specific ATP synthase

NC_016041
(Glaciecola nitratireducens FR1064)

2e-77

584) fliI
( YP_001349621.1 )

flagellum-specific ATP synthase

NC_009656
(Pseudomonas aeruginosa PA7)

2e-77

585) Acav_0530
( YP_004233020.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_015138
(Acidovorax avenae ATCC 19860)

2e-77

586) PCC21_022860
( YP_006646942.1 )

HrcN

NC_018525
(Pectobacterium carotovorum PCC21)

2e-77

587) fliI
( YP_003812388.1 )

flagellum-specific atp synthase

NC_014366
(gamma proteobacterium HdN1)

2e-77

588) PC1_2208
( YP_003017783.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_012917
(Pectobacterium carotovorum PC1)

2e-77

589) MDS_1852
( YP_004379635.1 )

flagellum-specific ATP synthase

NC_015410
(Pseudomonas mendocina NK-01)

2e-77

590) fliI
( YP_446712.1 )

flagellar protein export ATPase FliI

NC_007677
(Salinibacter ruber DSM 13855)

2e-77

591) fliI
( YP_003572706.1 )

flagellum-specific ATP synthase

NC_014032
(Salinibacter ruber M8)

2e-77

592) fliI
( YP_005036654.1 )

putative flagellum-specific ATP synthase

NC_016620
(Bacteriovorax marinus SJ)

2e-77

593) hrcN
( YP_001984352.1 )

type III secretion system ATP synthase

NC_010996
(Rhizobium etli CIAT 652)

3e-77

594) DND132_1089
( YP_005167106.1 )

FliI/YscN family ATPase

NC_016803
(Desulfovibrio desulfuricans ND132)

3e-77

595) Aave_0463
( YP_968844.1 )

type III secretion system ATPase

NC_008752
(Acidovorax citrulli AAC00-1)

4e-77

596) CTL2C_679
( YP_004716893.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_015744
(Chlamydia trachomatis L2c)

4e-77

597) fliI
( YP_007640893.1 )

flagellum-specific ATP synthase

NC_020802
(Psychromonas sp. CNPT3)

4e-77

598) Rta_29820
( YP_004620105.1 )

flagellar biosynthesis/type III secretory pathway ATPase

NC_015677
(Ramlibacter tataouinensis TTB310)

5e-77

599) CPS0A_0042
( YP_005663740.1 )

type III secretion system ATPase

NC_017289
(Chlamydia psittaci 01DC11)

6e-77

600) CPS0B_0042
( YP_005666666.1 )

type III secretion system ATPase

NC_017292
(Chlamydia psittaci 02DC15)

6e-77

601) CPS0D_0040
( YP_005664715.1 )

type III secretion system ATPase

NC_017290
(Chlamydia psittaci 08DC60)

6e-77

602) CPSIT_0040
( YP_004421896.1 )

type III secretion system ATPase

NC_015470
(Chlamydia psittaci 6BC)

6e-77

603) B595_0044
( YP_006732626.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018619
(Chlamydia psittaci 84/55)

6e-77

604) CPS0C_0041
( YP_005665688.1 )

type III secretion system ATPase

NC_017291
(Chlamydia psittaci C19/98)

6e-77

605) B711_0045
( YP_006739027.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018625
(Chlamydia psittaci CP3)

6e-77

606) B598_0043
( YP_006733744.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018620
(Chlamydia psittaci GR9)

6e-77

607) B599_0043
( YP_006741184.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018627
(Chlamydia psittaci MN)

6e-77

608) B603_0043
( YP_006737979.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018624
(Chlamydia psittaci WC)

6e-77

609) B601_0041
( YP_006735891.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018622
(Chlamydia psittaci WS/RT/E30)

6e-77

610) fliI
( YP_007710785.1 )

flagellum-specific ATP synthase

NC_020912
(Pseudomonas aeruginosa B136-33)

7e-77

611) fliI
( YP_006484005.1 )

flagellum-specific ATP synthase

NC_018080
(Pseudomonas aeruginosa DK2)

7e-77

612) fliI
( YP_002441801.1 )

flagellum-specific ATP synthase

NC_011770
(Pseudomonas aeruginosa LESB58)

7e-77

613) fliI
( YP_005976513.1 )

flagellum-specific ATP synthase

NC_017548
(Pseudomonas aeruginosa M18)

7e-77

614) fliI
( YP_005980215.1 )

flagellum-specific ATP synthase

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

7e-77

615) fliI
( NP_249795.1 )

flagellum-specific ATP synthase

NC_002516
(Pseudomonas aeruginosa PAO1)

7e-77

616) fliI
( YP_008131651.1 )

ATP synthase

NC_021577
(Pseudomonas aeruginosa RP73)

7e-77

617) fliI
( YP_792165.1 )

flagellum-specific ATP synthase

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

7e-77

618) ACPL_7909
( YP_006270855.1 )

flagellum-specific ATP synthase

NC_017803
(Actinoplanes sp. SE50/110)

7e-77

619) fliI
( YP_609316.1 )

flagellum-specific ATP synthase

NC_008027
(Pseudomonas entomophila L48)

7e-77

620) Psefu_1925
( YP_004473992.1 )

flagellar protein export ATPase FliI

NC_015556
(Pseudomonas fulva 12-X)

7e-77

621) RHE_PD00057
( NP_659980.1 )

type III secretion system ATP synthase

NC_004041
(Rhizobium etli CFN 42)

7e-77

622) TOPB45_0063
( YP_004627107.1 )

ATPase, FliI/YscN family

NC_015682
(Thermodesulfobacterium geofontis OPB45)

7e-77

623) Spica_1667
( YP_004698318.1 )

ATPase

NC_015732
(Treponema caldaria DSM 7334)

8e-77

624) yscN
( YP_005371589.1 )

FliI/YscN family ATPase

NC_017030
(Corallococcus coralloides DSM 2259)

8e-77

625) fliI
( YP_003797929.1 )

ATPase FliI

NC_014355
(Candidatus Nitrospira defluvii )

8e-77

626) AciPR4_1815
( YP_004182615.1 )

FliI/YscN family ATPase

NC_014963
(Terriglobus saanensis SP1PR4)

1e-76

627) ECBG_01249
( YP_007751363.1 )

flagellar protein export ATPase FliI

NC_020995
(Enterococcus casseliflavus EC20)

1e-76

628) Dalk_0670
( YP_002429843.1 )

ATPase FliI/YscN

NC_011768
(Desulfatibacillum alkenivorans AK-01)

1e-76

629) B602_0041
( YP_006736936.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018623
(Chlamydia psittaci M56)

9e-77

630) MYSTI_02833
( YP_007359833.1 )

FliI/YscN family ATPase

NC_020126
(Myxococcus stipitatus DSM 14675)

9e-77

631) Metme_2953
( YP_004513832.1 )

flagellar protein export ATPase FliI

NC_015572
(Methylomonas methanica MC09)

2e-76

632) Dde_0350
( YP_386846.1 )

flagellar protein export ATPase FliI

NC_007519
(Desulfovibrio alaskensis G20)

3e-76

633) H650_14860
( YP_008108772.1 )

hypothetical protein

NC_021500
(Enterobacter sp. R4-368)

3e-76

634) fliI
( YP_008112445.1 )

flagellum-specific ATP synthase FliI

NC_021505
(Pseudomonas putida NBRC 14164)

5e-76

635) fliI
( YP_934222.1 )

ATP synthase

NC_008702
(Azoarcus sp. BH72)

5e-76

636) Mmwyl1_3445
( YP_001342283.1 )

flagellar protein export ATPase FliI

NC_009654
(Marinomonas sp. MWYL1)

6e-76

637) fliI
( YP_002604948.1 )

protein FliI

NC_012108
(Desulfobacterium autotrophicum HRM2)

6e-76

638) Dester_1234
( YP_004281929.1 )

FliI/YscN family ATPase

NC_015185
(Desulfurobacterium thermolithotrophum DSM 11699)

6e-76

639) YSA_08093
( YP_006388261.1 )

flagellum-specific ATP synthase

NC_017986
(Pseudomonas putida ND6)

7e-76

640) D781_3942
( YP_007346317.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_020064
(Serratia marcescens FGI94)

1e-75

641) fliI
( YP_005929370.1 )

protein FliI

NC_017530
(Pseudomonas putida BIRD-1)

1e-75

642) fliI
( YP_001670153.1 )

flagellum-specific ATP synthase

NC_010322
(Pseudomonas putida GB-1)

1e-75

643) fliI
( YP_008096583.1 )

ATP synthase

NC_021491
(Pseudomonas putida H8234)

1e-75

644) fliI
( YP_003072890.1 )

flagellum-specific ATP synthase

NC_012997
(Teredinibacter turnerae T7901)

1e-75

645) fliI
( YP_007495493.1 )

Flagellum-specific ATP synthase

NC_020409
(Desulfovibrio piezophilus C1TLV30)

1e-75

646) spa47
( YP_406188.1 )

ATP synthase SpaL

NC_007607
(Shigella dysenteriae Sd197)

1e-75

647) spa47
( YP_005712041.1 )

ATP synthase

NC_017319
(Shigella flexneri 2002017)

1e-75

648) spa47
( NP_858282.1 )

ATP synthase SpaL

NC_004851
(Shigella flexneri 301)

1e-75

649) fliI
( YP_006532972.1 )

Flagellum-specific ATP synthase

NC_018220
(Pseudomonas putida DOT-T1E)

7e-76

650) fliI
( YP_001266842.1 )

flagellum-specific ATP synthase

NC_009512
(Pseudomonas putida F1)

7e-76

651) TOL_2514
( YP_007683150.1 )

flagellum-specific ATP synthase

NC_020888
(Thalassolituus oleivorans MIL-1)

7e-76

652) fliI
( YP_007230573.1 )

flagellum-specific ATP synthase

NC_019905
(Pseudomonas putida PC9)

8e-76

653) Daes_2015
( YP_004121769.1 )

FliI/YscN family ATPase

NC_014844
(Desulfovibrio aespoeensis Aspo-2)

8e-76

654) spa47
( YP_313366.1 )

ATP synthase SpaL

NC_007385
(Shigella sonnei Ss046)

8e-76

655) Desgi_2227
( YP_007945332.1 )

flagellar protein export ATPase FliI

NC_021184
(Desulfotomaculum gibsoniae DSM 7213)

2e-75

656) Achl_2988
( YP_002489038.1 )

FliI/YscN family ATPase

NC_011886
(Arthrobacter chlorophenolicus A6)

2e-75

657) Fraau_2081
( YP_005378147.1 )

flagellar protein export ATPase FliI

NC_017033
(Frateuria aurantia DSM 6220)

2e-75

658) fliI
( NP_746480.2 )

flagellum-specific ATP synthase

NC_002947
(Pseudomonas putida KT2440)

2e-75

659) PPS_3768
( YP_004703189.1 )

flagellum-specific ATP synthase

NC_015733
(Pseudomonas putida S16)

2e-75

660) Desal_1150
( YP_002990752.1 )

FliI/YscN family ATPase

NC_012881
(Desulfovibrio salexigens DSM 2638)

2e-75

661) Btus_1497
( YP_003589354.1 )

flagellar protein export ATPase FliI

NC_014098
(Kyrpidia tusciae DSM 2912)

2e-75

662) fliI
( YP_003786555.1 )

flagellar biosynthesis/type III secretory pathway ATPase FliI

NC_014330
(Brachyspira pilosicoli 95/1000)

2e-75

663) fliI
( YP_006707828.1 )

flagellar biosynthesis/type III secretory pathway ATPase FliI

NC_018607
(Brachyspira pilosicoli B2904)

2e-75

664) BPP43_04730
( YP_007234473.1 )

flagellar biosynthesis/type III secretory pathway ATPase FliI

NC_019908
(Brachyspira pilosicoli P43/6/78)

2e-75

665) SbBS512_A0183
( YP_001883212.1 )

ATP synthase SpaL

NC_010660
(Shigella boydii CDC 3083-94)

2e-75

666) fliI
( YP_004883669.1 )

flagellum-specific ATP synthase

NC_016048
(Oscillibacter valericigenes Sjm18-20)

2e-75

667) fliI
( YP_892815.1 )

flagellum-specific ATP synthase

NC_008599
(Campylobacter fetus 82-40)

3e-75

668) Slip_0956
( YP_003702300.1 )

flagellar protein export ATPase FliI

NC_014220
(Syntrophothermus lipocalidus DSM 12680)

3e-75

669) AciX9_4144
( YP_004210242.1 )

FliI/YscN family ATPase

NC_015057
(Granulicella tundricola MP5ACTX9)

3e-75

670) Plim_3098
( YP_003631112.1 )

FliI/YscN family ATPase

NC_014148
(Planctomyces limnophilus DSM 3776)

3e-75

671) fliI
( YP_007327397.1 )

flagellar-specific ATPase

NC_020055
(Desulfovibrio hydrothermalis DSM 14728)

3e-75

672) Mar181_0808
( YP_004480781.1 )

flagellar protein export ATPase FliI

NC_015559
(Marinomonas posidonica IVIA-Po-181)

3e-75

673) fliI
( YP_317145.1 )

flagellum-specific ATP synthase

NC_007406
(Nitrobacter winogradskyi Nb-255)

4e-75

674) hrcN
( NP_791227.1 )

type III secretion cytoplasmic ATPase HrcN

NC_004578
(Pseudomonas syringae DC3000)

5e-75

675) fliI
( YP_005594306.1 )

flagellar biosynthesis/type III secretory pathway ATPase

NC_017243
(Brachyspira intermedia PWS/A)

5e-75

676) fliI
( YP_001242347.1 )

flagellum-specific ATP synthase

NC_009485
(Bradyrhizobium sp. BTAi1)

5e-75

677) fliI
( YP_005468125.1 )

flagellar protein export ATPase

NC_017094
(Leptospirillum ferrooxidans C2-3)

5e-75

678) fliI
( YP_001141190.1 )

flagellum-specific ATP synthase

NC_009348
(Aeromonas salmonicida A449)

6e-75

679) hrcN
( YP_273549.1 )

type III secretion component protein HrcN

NC_005773
(Pseudomonas syringae 1448A)

1e-74

680) Taci_1334
( YP_003317847.1 )

FliI/YscN family ATPase

NC_013522
(Thermanaerovibrio acidaminovorans DSM 6589)

1e-74

681) Desaf_1835
( YP_005051827.1 )

FliI/YscN family ATPase

NC_016629
(Desulfovibrio africanus Walvis Bay)

1e-74

682) Bmur_0360
( YP_003632663.1 )

FliI/YscN family ATPase

NC_014150
(Brachyspira murdochii DSM 12563)

1e-74

683) fliI
( YP_004680086.1 )

flagellar biosynthesis/type III secretory pathway ATPase fliI

NC_015722
(Candidatus Midichloria mitochondrii IricVA)

1e-74

684) Ssed_0074
( YP_001471815.1 )

FliI/YscN family ATPase

NC_009831
(Shewanella sediminis HAW-EB3)

1e-74

685) S70_09815
( YP_006216514.1 )

ATP synthase SpaL

NC_017731
(Providencia stuartii MRSN 2154)

6e-75

686) Mahau_0855
( YP_004462875.1 )

type III secretion system ATPase, FliI/YscN

NC_015520
(Mahella australiensis 50-1 BON)

7e-75

687) Sulba_2308
( YP_006405158.1 )

FliI/YscN family ATPase

NC_018002
(Sulfurospirillum barnesii SES-3)

7e-75

688) fliI
( YP_855907.1 )

flagellum-specific ATP synthase

NC_008570
(Aeromonas hydrophila ATCC 7966)

8e-75

689) fliI
( YP_008042614.1 )

flagellum-specific ATP synthase

NC_021290
(Aeromonas hydrophila ML09-119)

8e-75

690) fliI
( YP_006703533.1 )

flagellar biosynthesis/type III secretory pathway ATPase FliI

NC_018604
(Brachyspira pilosicoli WesB)

8e-75

691) STAUR_3041
( YP_003952660.1 )

ATPase, flII/yscn family

NC_014623
(Stigmatella aurantiaca DW4/3-1)

9e-75

692) Jden_2024
( YP_003161965.1 )

FliI/YscN family ATPase

NC_013174
(Jonesia denitrificans DSM 20603)

1e-74

693) TK90_1161
( YP_003460406.1 )

flagellar protein export ATPase FliI

NC_013889
(Thioalkalivibrio sp. K90mix)

1e-74

694) fliI
( YP_005093174.1 )

flagellum-specific ATP synthase

NC_016745
(Oceanimonas sp. GK1)

2e-74

695) C770_GR4pB208
( YP_007192278.1 )

Flagellar biosynthesis/type III secretory pathway ATPase

NC_019847
(Sinorhizobium meliloti GR4)

2e-74

696) hrcN
( YP_005804087.1 )

ATP synthase in type III secretion system

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-74

697) hrcN
( YP_002650070.1 )

Hrp/hrc secretion/translocation pathway protein HrcN

NC_012214
(Erwinia pyrifoliae Ep1/96)

3e-74

698) fliI
( YP_001203624.1 )

flagellum-specific ATP synthase

NC_009445
(Bradyrhizobium sp. ORS278)

3e-74

699) fliI
( YP_002720864.1 )

flagellar biosynthesis/type III secretory pathway ATPase

NC_012225
(Brachyspira hyodysenteriae WA1)

3e-74

700) PSPPH_2530
( YP_274726.1 )

type III secretion component

NC_005773
(Pseudomonas syringae 1448A)

4e-74

701) B565_1102
( YP_004391754.1 )

flagellar protein export ATPase FliI

NC_015424
(Aeromonas veronii B565)

4e-74

702) fliI
( NP_860096.1 )

flagellum-specific ATP synthase

NC_004917
(Helicobacter hepaticus ATCC 51449)

4e-74

703) hrcN
( YP_005818259.1 )

hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcN protein

NC_017445
(Erwinia sp. Ejp617)

5e-74

704) fliI
( YP_006824037.1 )

flagellum-specific ATP synthase

NC_018692
(Alteromonas macleodii Black Sea 11)

5e-74

705) Dvul_2671
( YP_968110.1 )

flagellar protein export ATPase FliI

NC_008751
(Desulfovibrio vulgaris DP4)

5e-74

706) fliI
( YP_009534.1 )

flagellum-specific ATP synthase FliI

NC_002937
(Desulfovibrio vulgaris Hildenborough)

5e-74

707) Deval_0281
( YP_005701090.1 )

FliI/YscN family ATPase

NC_017310
(Desulfovibrio vulgaris RCH1)

5e-74

708) Glaag_1284
( YP_004433513.1 )

flagellar protein export ATPase FliI

NC_015497
(Glaciecola sp. 4H-3-7+YE-5)

6e-74

709) fliI
( YP_662604.1 )

flagellum-specific ATP synthase

NC_008228
(Pseudoalteromonas atlantica T6c)

6e-74

710) S58_17270
( YP_007511321.1 )

flagellum-specific ATP synthase

NC_020453
(Bradyrhizobium oligotrophicum S58)

6e-74

711) fliI
( YP_001982194.1 )

flagellum-specific ATP synthase

NC_010995
(Cellvibrio japonicus Ueda107)

7e-74

712) EUS_27210
( YP_007776549.1 )

type III secretion system ATPase, FliI/YscN

NC_021011
(Eubacterium siraeum 70/3)

9e-74

713) ES1_25190
( YP_007840847.1 )

type III secretion system ATPase, FliI/YscN

NC_021043
(Eubacterium siraeum V10Sc8a)

9e-74

714) fliI
( YP_002730503.1 )

flagellar protein export ATPase FliI

NC_012440
(Persephonella marina EX-H1)

9e-74

715) USDA257_p02820
( YP_006529154.1 )

putative ATP synthase y4yI

NC_018179
(Sinorhizobium fredii USDA 257)

1e-73

716) Pmen_0041
( YP_001185547.1 )

FliI/YscN family ATPase

NC_009439
(Pseudomonas mendocina ymp)

1e-73

717) Oter_0419
( YP_001817309.1 )

flagellar protein export ATPase FliI

NC_010571
(Opitutus terrae PB90-1)

1e-73

718) yscN
( YP_006397500.1 )

ATP synthase YscN

NC_018000
(Sinorhizobium fredii USDA 257)

1e-73

719) fliI
( YP_003538578.1 )

flagellum-specific ATP synthase

NC_013971
(Erwinia amylovora ATCC 49946)

1e-73

720) fliI1
( YP_003530866.1 )

flagellum-specific ATP synthase

NC_013961
(Erwinia amylovora CFBP1430)

1e-73

721) fliI
( YP_005950015.1 )

flagellum-specific ATP synthase FliI

NC_017538
(Oligotropha carboxidovorans OM4)

1e-73

722) fliI
( YP_004631951.1 )

flagellum-specific ATP synthase FliI

NC_015684
(Oligotropha carboxidovorans OM5)

1e-73

723) fliI
( YP_002290081.1 )

flagellum-specific ATP synthase

NC_011386
(Oligotropha carboxidovorans OM5; ATCC 49405)

1e-73

724) Alvin_2939
( YP_003444873.1 )

flagellar protein export ATPase FliI

NC_013851
(Allochromatium vinosum DSM 180)

1e-73

725) Dd1591_1889
( YP_003004218.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_012912
(Dickeya zeae Ech1591)

2e-73

726) Lcho_1019
( YP_001790055.1 )

flagellar protein export ATPase FliI

NC_010524
(Leptothrix cholodnii SP-6)

2e-73

727) fliI
( YP_002608114.1 )

flagellum-specific ATP synthase

NC_012115
(Nautilia profundicola AmH)

2e-73

728) invC
( YP_002648998.1 )

ATP synthase SpaL

NC_012214
(Erwinia pyrifoliae Ep1/96)

2e-73

729) fliI
( YP_006747074.1 )

flagellum-specific ATP synthase

NC_018632
(Alteromonas macleodii ATCC 27126)

2e-73

730) fliI
( YP_006801977.1 )

flagellum-specific ATP synthase

NC_018679
(Alteromonas macleodii Balearic Sea AD45)

2e-73

731) fliI
( YP_006798063.1 )

flagellum-specific ATP synthase

NC_018678
(Alteromonas macleodii English Channel 673)

2e-73

732) fliI
( YP_005803024.1 )

flagellum-specific ATP synthase

NC_017390
(Erwinia pyrifoliae DSM 12163)

2e-73

733) fliI
( YP_002649117.1 )

flagellum-specific ATP synthase

NC_012214
(Erwinia pyrifoliae Ep1/96)

2e-73

734) fliI
( YP_005819178.1 )

flagellum-specific ATP synthase

NC_017445
(Erwinia sp. Ejp617)

2e-73

735) Dd586_1886
( YP_003333450.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_013592
(Dickeya dadantii Ech586)

3e-73

736) hrcN
( YP_001906467.1 )

HrcN protein

NC_010694
(Erwinia tasmaniensis Et1/99)

3e-73

737) fliI
( YP_006975934.1 )

flagellum-specific ATP synthase

NC_019393
(Alteromonas macleodii AltDE1)

3e-73

738) fliI
( YP_004426323.1 )

ATP synthase

NC_011138
(Alteromonas macleodii Deep ecotype)

3e-73

739) fliI
( YP_008171076.1 )

flagellum-specific ATP synthase

NC_021710
(Alteromonas macleodii Ionian Sea U4)

3e-73

740) fliI
( YP_008195485.1 )

flagellum-specific ATP synthase

NC_021717
(Alteromonas macleodii Ionian Sea U7)

3e-73

741) fliI
( YP_008175206.1 )

flagellum-specific ATP synthase

NC_021712
(Alteromonas macleodii Ionian Sea U8)

3e-73

742) fliI
( YP_008183042.1 )

flagellum-specific ATP synthase

NC_021714
(Alteromonas macleodii Ionian Sea UM4b)

3e-73

743) fliI
( YP_008178989.1 )

flagellum-specific ATP synthase

NC_021713
(Alteromonas macleodii Ionian Sea UM7)

3e-73

744) hrcN
( YP_003883242.1 )

type III secretory pathway, ATPase HrcN

NC_014500
(Dickeya dadantii 3937)

3e-73

745) spaI
( YP_005802901.1 )

type III secretion system ATPase SpaI/InvC

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-73

746) Nwat_2202
( YP_003761355.1 )

flagellar protein export ATPase FliI

NC_014315
(Nitrosococcus watsonii C-113)

4e-73

747) Despr_2224
( YP_004195659.1 )

type III secretion system ATPase, FliI/YscN

NC_014972
(Desulfobulbus propionicus DSM 2032)

4e-73

748) fliI
( YP_008191962.1 )

flagellum-specific ATP synthase

NC_021716
(Alteromonas macleodii English Channel 615)

5e-73

749) DvMF_2290
( YP_002436700.1 )

flagellar protein export ATPase FliI

NC_011769
(Desulfovibrio vulgaris Miyazaki F)

5e-73

750) ECH74115_4146
( YP_002272334.1 )

ATP synthase SpaL

NC_011353
(Escherichia coli EC4115)

6e-73

751) Anamo_0264
( YP_006443249.1 )

type III secretion system ATPase, FliI/YscN

NC_018024
(Anaerobaculum mobile DSM 13181)

7e-73

752) Hneap_0436
( YP_003262340.1 )

flagellar protein export ATPase FliI

NC_013422
(Halothiobacillus neapolitanus c2)

7e-73

753) Dsui_1753
( YP_005027979.1 )

flagellar protein export ATPase FliI

NC_016616
(Dechlorosoma suillum PS)

7e-73

754) swp_5095
( YP_002314297.1 )

ATPase FliI/YscN

NC_011566
(Shewanella piezotolerans WP3)

7e-73

755) Tlie_0077
( YP_004931920.1 )

type III secretion system ATPase, FliI/YscN

NC_016148
(Thermovirga lienii DSM 17291)

1e-72

756) Galf_1066
( YP_003846860.1 )

flagellar protein export ATPase FliI

NC_014394
(Gallionella capsiferriformans ES-2)

1e-72

757) EC042_3069
( YP_006097364.1 )

type III secretion system protein

NC_017626
(Escherichia coli 042)

1e-72

758) eivC
( YP_006145312.1 )

flagellum-specific ATP synthase

NC_017646
(Escherichia coli CE10)

1e-72

759) ECUMN_3201
( YP_002413885.1 )

ATP synthase SpaL

NC_011751
(Escherichia coli UMN026)

1e-72

760) LFML04_0230
( YP_006765435.1 )

flagellum-specific ATP synthase FliI

NC_018649
(Leptospirillum ferriphilum ML-04)

1e-72

761) fliI
( YP_534075.1 )

flagellum-specific ATP synthase

NC_007925
(Rhodopseudomonas palustris BisB18)

1e-72

762) lgiI
( YP_002411033.1 )

lateral flagellar export/assembly protein

NC_011751
(Escherichia coli UMN026)

1e-72

763) Z4194
( NP_289427.1 )

ATP synthase SpaL

NC_002655
(Escherichia coli EDL933)

7e-73

764) ECs3730
( NP_311757.1 )

ATP synthase SpaL

NC_002695
(Escherichia coli Sakai)

7e-73

765) eivC
( YP_003079648.1 )

ATP synthase SpaL

NC_013008
(Escherichia coli TW14359)

7e-73

766) CDCO157_3483
( YP_006314350.1 )

ATP synthase SpaL

NC_017906
(Escherichia coli Xuzhou21)

7e-73

767) fliI
( YP_006919806.1 )

flagellum-specific ATP synthase FliI

NC_018870
(Thermacetogenium phaeum DSM 12270)

7e-73

768) Dbac_3032
( YP_003159523.1 )

FliI/YscN family ATPase

NC_013173
(Desulfomicrobium baculatum DSM 4028)

8e-73

769) fliI
( YP_001907920.1 )

flagellum-specific ATP synthase

NC_010694
(Erwinia tasmaniensis Et1/99)

9e-73

770) Csal_1958
( YP_574009.1 )

ATPase FliI/YscN

NC_007963
(Chromohalobacter salexigens DSM 3043)

9e-73

771) Noc_2356
( YP_344344.1 )

flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN

NC_007484
(Nitrosococcus oceani ATCC 19707)

2e-72

772) fliI
( YP_192090.1 )

flagellum-specific ATP synthase

NC_006677
(Gluconobacter oxydans 621H)

2e-72

773) fliI
( YP_004916198.1 )

flagellum-specific ATP synthase

NC_016112
(Methylomicrobium alcaliphilum 20Z)

2e-72

774) ABLL_2370
( YP_005554562.1 )

flagellum-specific ATP synthase

NC_017192
(Arcobacter sp. L)

2e-72

775) fliI
( YP_008237670.1 )

Flagellum-specific ATP synthase FliI

NC_021745
(Ralstonia solanacearum FQY_4)

2e-72

776) fliI
( YP_570795.1 )

flagellum-specific ATP synthase

NC_007958
(Rhodopseudomonas palustris BisB5)

2e-72

777) fliI
( YP_007600317.1 )

flagellum-specific ATP synthase

NC_020555
(Helicobacter cinaedi ATCC BAA-847)

2e-72

778) fliI
( YP_006234827.1 )

flagellum-specific ATP synthase

NC_017761
(Helicobacter cinaedi PAGU611)

2e-72

779) Thena_0176
( YP_004436956.1 )

FliI/YscN family ATPase

NC_015499
(Thermodesulfobium narugense DSM 14796)

2e-72

780) fliI
( YP_006167285.1 )

FliI/YscN family ATPase

NC_017663
(Escherichia coli P12b)

2e-72

781) lfiI
( YP_003227347.1 )

lateral flagellum-specific ATP synthase

NC_013361
(Escherichia coli 11368)

2e-72

782) EcolC_3379
( YP_001726325.1 )

FliI/YscN family ATPase

NC_010468
(Escherichia coli ATCC 8739)

2e-72

783) EKO11_3659
( YP_005279297.1 )

FliI/YscN family ATPase

NC_016902
(Escherichia coli KO11FL)

2e-72

784) KO11_01265
( YP_006162595.1 )

FliI/YscN family ATPase

NC_017660
(Escherichia coli KO11FL)

2e-72

785) fliI
( YP_008563408.1 )

ATP synthase

NC_022364
(Escherichia coli LY180)

2e-72

786) lfiI
( YP_001742360.1 )

lateral flagellar export/assembly protein LfiI

NC_010498
(Escherichia coli SMS-3-5)

2e-72

787) lfiI
( YP_006123046.1 )

flagellum-specific ATP synthase

NC_017635
(Escherichia coli W)

2e-72

788) WFL_01270
( YP_006171709.1 )

FliI/YscN family ATPase

NC_017664
(Escherichia coli W)

2e-72

789) Sdel_2155
( YP_003305202.1 )

flagellar protein export ATPase FliI

NC_013512
(Sulfurospirillum deleyianum DSM 6946)

2e-72

790) fliI
( YP_003296191.1 )

flagellum-specific ATP synthase

NC_013508
(Edwardsiella tarda EIB202)

3e-72

791) fliI
( YP_005699535.1 )

Flagellum-specific ATP synthase FliI

NC_017309
(Edwardsiella tarda FL6-60)

3e-72

792) fliI
( NP_768841.1 )

flagellum-specific ATP synthase

NC_004463
(Bradyrhizobium japonicum USDA 110)

3e-72

793) Rpdx1_3888
( YP_004110181.1 )

FliI/YscN family ATPase

NC_014834
(Rhodopseudomonas palustris DX-1)

3e-72

794) fliI
( NP_946979.1 )

flagellum-specific ATP synthase

NC_005296
(Rhodopseudomonas palustris CGA009)

3e-72

795) fliI
( YP_001990824.1 )

flagellum-specific ATP synthase

NC_011004
(Rhodopseudomonas palustris TIE-1)

3e-72

796) Amir_2344
( YP_003100130.1 )

FliI/YscN family ATPase

NC_013093
(Actinosynnema mirum DSM 43827)

3e-72

797) fliI
( YP_001407433.1 )

flagellum-specific ATP synthase

NC_009715
(Campylobacter curvus 525.92)

3e-72

798) fliI
( YP_755901.1 )

flagellum-specific ATP synthase

NC_008347
(Maricaulis maris MCS10)

3e-72

799) fliI
( YP_007893392.1 )

Flagellum-specific ATPase

NC_021149
(Azotobacter vinelandii CA)

3e-72

800) fliI
( YP_007898441.1 )

Flagellum-specific ATPase

NC_021150
(Azotobacter vinelandii CA6)

3e-72

801) fliI
( YP_002799582.1 )

flagellum-specific ATPase

NC_012560
(Azotobacter vinelandii DJ)

3e-72

802) lfiI
( YP_006094590.1 )

lateral flagellar specific ATP synthase (FliI-like)

NC_017626
(Escherichia coli 042)

3e-72

803) fliI
( YP_006137318.1 )

Flagellar protein export ATPase

NC_017644
(Escherichia coli NA114)

3e-72

804) fliI
( YP_487515.1 )

flagellum-specific ATP synthase

NC_007778
(Rhodopseudomonas palustris HaA2)

4e-72

805) A464_2918
( YP_008323512.1 )

putative ATP synthase SpaL

NC_021870
(Salmonella bongori N268-08)

4e-72

806) spaI
( YP_004731334.1 )

secretory apparatus ATP synthase (associated with virulence)

NC_015761
(Salmonella bongori NCTC 12419)

4e-72

807) Tmz1t_2903
( YP_002889879.1 )

ATPase, FliI/YscN family

NC_011662
(Thauera sp. MZ1T)

4e-72

808) Daro_0770
( YP_283996.1 )

ATPase FliI/YscN

NC_007298
(Dechloromonas aromatica RCB)

5e-72

809) fliI
( YP_124039.1 )

flagellum-specific ATP synthase FliI

NC_006368
(Legionella pneumophila Paris)

5e-72

810) fliI
( YP_007629515.1 )

flagellum-specific ATP synthase

NC_020796
(Edwardsiella tarda C07-087)

6e-72

811) fliI
( YP_007365962.1 )

flagellar biosynthesis/type III secretory pathway ATPase

NC_020127
(Lawsonia intracellularis N343)

6e-72

812) fliI
( YP_595229.1 )

flagellar biosynthesis/type III secretory pathway ATPase

NC_008011
(Lawsonia intracellularis PHE/MN1-00)

6e-72

813) Daud_1762
( YP_001717890.1 )

flagellar protein export ATPase FliI

NC_010424
(Candidatus Desulforudis audaxviator MP104C)

1e-71

814) C427_3666
( YP_007545122.1 )

flagellar protein export ATPase FliI

NC_020514
(Glaciecola psychrophila 170)

1e-71

815) fliI
( YP_003718680.1 )

H(+)-transporting two-sector ATPase

NC_014246
(Mobiluncus curtisii ATCC 43063)

1e-71

816) fliI
( YP_127059.1 )

flagellum-specific ATP synthase FliI

NC_006369
(Legionella pneumophila Lens)

1e-71

817) fliI2
( YP_005206185.1 )

protein FliI2

NC_016830
(Pseudomonas fluorescens F113)

1e-71

818) fliI
( YP_006032612.1 )

flagellum-specific atp synthase protein

NC_017575
(Ralstonia solanacearum Po82)

1e-71

819) SARI_00079
( YP_001569174.1 )

ATP synthase SpaL

NC_010067
(Salmonella enterica RSK2980)

1e-71

820) SSPA2566
( YP_002143411.1 )

ATP synthase SpaL

NC_011147
(Salmonella enterica AKU12601)

1e-71

821) spaI
( YP_151921.1 )

virulence-associated secretory apparatus ATP synthase

NC_006511
(Salmonella enterica ATCC 9150)

1e-71

822) Atc_1487
( YP_004748836.1 )

flagellum-specific ATP synthase FliI

NC_015850
(Acidithiobacillus caldus SM-1)

7e-72

823) lfiI
( YP_003232804.1 )

putative lateral flagellum-specific ATP synthase

NC_013364
(Escherichia coli 11128)

7e-72

824) NT01EI_2424
( YP_002933829.1 )

flagellum-specific ATP synthase, putative

NC_012779
(Edwardsiella ictaluri 93-146)

8e-72

825) CAP2UW1_3803
( YP_003168982.1 )

flagellar protein export ATPase FliI

NC_013194
(Candidatus Accumulibacter phosphatis UW-1)

8e-72

826) Tgr7_1966
( YP_002514034.1 )

flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN

NC_011901
(Thioalkalivibrio sulfidophilus HL-EbGR7)

8e-72

827) ysaN
( YP_001007702.1 )

ATP synthase SpaL

NC_008800
(Yersinia enterocolitica 8081)

8e-72

828) fliI
( YP_005612483.1 )

flagellum-specific ATP synthase

NC_017249
(Bradyrhizobium japonicum USDA 6)

1e-71

829) fliI
( YP_006505749.1 )

flagellum-specific ATP synthase

NC_018139
(Legionella pneumophila Lorraine)

1e-71

830) invC
( YP_005819296.1 )

ATP synthase SpaL

NC_017445
(Erwinia sp. Ejp617)

1e-71

831) fliI
( NP_929212.1 )

flagellum-specific ATP synthase

NC_005126
(Photorhabdus luminescens TTO1)

2e-71

832) fliI
( YP_003619048.1 )

flagellum-specific ATP synthase

NC_014125
(Legionella pneumophila 2300/99 Alcoy)

2e-71

833) lp12_1695
( YP_005186056.1 )

nucleotide binding protein FliI

NC_016811
(Legionella pneumophila ATCC 43290)

2e-71

834) fliI
( YP_001250508.1 )

flagellum-specific ATP synthase FliI

NC_009494
(Legionella pneumophila Corby)

2e-71

835) fliI
( YP_006509021.1 )

flagellum-specific ATP synthase

NC_018140
(Legionella pneumophila HL06041035)

2e-71

836) LPE509_01433
( YP_007567976.1 )

Flagellum-specific ATP synthase FliI

NC_020521
(Legionella pneumophila Philadelphia 1)

2e-71

837) fliI
( YP_095783.1 )

flagellum-specific ATP synthase FliI

NC_002942
(Legionella pneumophila Philadelphia 1)

2e-71

838) fliL
( YP_008063443.1 )

flagellum-specific ATP synthase FliI

NC_021350
(Legionella pneumophila Thunder Bay)

2e-71

839) fliI
( NP_521954.1 )

flagellum-specific ATP synthase

NC_003296
(Ralstonia solanacearum GMI1000)

2e-71

840) fliI
( YP_003749340.1 )

FliI: Flagellar Biosynthesis protein; flagellum-specific ATP synthase

NC_014310
(Ralstonia solanacearum PSI07)

2e-71

841) SE451236_20565
( YP_008267100.1 )

type III secretion system ATPase

NC_021820
(Salmonella enterica 08-1736)

2e-71

842) invC
( YP_005239003.1 )

ATP synthase SpaL

NC_016856
(Salmonella enterica 14028S)

2e-71

843) invC
( YP_002227638.1 )

ATP synthase SpaL

NC_011274
(Salmonella enterica 287/91)

2e-71

844) SBOV29201
( YP_008506742.1 )

surface presentation of antigens

NC_022241
(Salmonella enterica 3114)

2e-71

845) SEEH1578_23280
( YP_008248702.1 )

ATP synthase SpaL

NC_021810
(Salmonella enterica 41578)

2e-71

846) invC
( YP_005398257.1 )

secretory apparatus ATP synthase (associated with virulence)

NC_017046
(Salmonella enterica 798)

2e-71

847) SU5_03375
( YP_006088982.1 )

Type III secretion cytoplasmic ATP synthase

NC_017623
(Salmonella enterica B182)

2e-71

848) invC
( YP_008482457.1 )

secretory apparatus ATP synthase

NC_022221
(Salmonella enterica CDC1983-67)

2e-71

849) SEEB0189_05700
( YP_008307491.1 )

type III secretion system ATPase

NC_021844
(Salmonella enterica CFSAN000189)

2e-71

850) CFSAN001921_02605
( YP_008253929.1 )

type III secretion system ATPase

NC_021814
(Salmonella enterica CFSAN001921)

2e-71

851) CFSAN001992_19055
( YP_007473527.1 )

ATP synthase SpaL

NC_020307
(Salmonella enterica CFSAN001992)

2e-71

852) CFSAN002050_20770
( YP_008262025.1 )

type III secretion system ATPase

NC_021818
(Salmonella enterica CFSAN002050)

2e-71

853) CFSAN002069_17800
( YP_008252320.1 )

type III secretion system ATPase

NC_021812
(Salmonella enterica CFSAN002069)

2e-71

854) spaI
( NP_457288.1 )

secretory apparatus ATP synthase (associated with virulence)

NC_003198
(Salmonella enterica CT18)

2e-71

855) SeD_A3204
( YP_002216863.1 )

ATP synthase SpaL

NC_011205
(Salmonella enterica CT_02021853)

2e-71

856) SeSA_A3047
( YP_002115846.1 )

ATP synthase SpaL

NC_011094
(Salmonella enterica CVM19633)

2e-71

857) STMMW_28561
( YP_005233883.1 )

secretory apparatus ATP synthase (associated with virulence)

NC_016854
(Salmonella enterica D23580)

2e-71

858) invC
( NP_461815.1 )

ATP synthase SpaL

NC_003197
(Salmonella enterica LT2)

2e-71

859) STBHUCCB_29400
( YP_005218440.1 )

ATP synthase spaL

NC_016832
(Salmonella enterica P-stx-12)

2e-71

860) invC
( YP_002244807.1 )

ATP synthase SpaL

NC_011294
(Salmonella enterica P125109)

2e-71

861) spaI
( YP_002638470.1 )

ATP synthase SpaL

NC_012125
(Salmonella enterica RKS4594)

2e-71

862) invC
( YP_005214002.1 )

secretory apparatus ATP synthase (associated with virulence)

NC_016831
(Salmonella enterica RKS5078)

2e-71

863) I137_13780
( YP_008382157.1 )

type III secretion system ATPase

NC_021984
(Salmonella enterica S06004)

2e-71

864) invC
( YP_217813.1 )

ATP synthase SpaL

NC_006905
(Salmonella enterica SC-B67)

2e-71

865) SPAB_03597
( YP_001589771.1 )

ATP synthase SpaL

NC_010102
(Salmonella enterica SGSC4150; SPB7)

2e-71

866) invC
( YP_005182762.1 )

secretory apparatus ATP synthase (associated with virulence)

NC_016810
(Salmonella enterica SL1344)

2e-71

867) SNSL254_A3099
( YP_002042135.1 )

ATP synthase SpaL

NC_011080
(Salmonella enterica SL254)

2e-71

868) SeHA_C3084
( YP_002046854.1 )

ATP synthase SpaL

NC_011083
(Salmonella enterica SL476)

2e-71

869) SeAg_B3016
( YP_002147791.1 )

ATP synthase SpaL

NC_011149
(Salmonella enterica SL483)

2e-71

870) invC
( YP_005243875.1 )

ATP synthase SpaL

NC_016857
(Salmonella enterica ST4/74)

2e-71

871) spaI
( NP_806497.1 )

ATP synthase SpaL

NC_004631
(Salmonella enterica Ty2)

2e-71

872) TY21A_14125
( YP_007927067.1 )

ATP synthase SpaL

NC_021176
(Salmonella enterica Ty21a)

2e-71

873) STU288_14625
( YP_007904016.1 )

ATP synthase SpaL

NC_021151
(Salmonella enterica U288)

2e-71

874) invC
( YP_005253383.1 )

ATP synthase SpaL

NC_016863
(Salmonella enterica UK-1)

2e-71

875) SN31241_39860
( YP_008361901.1 )

ATP synthase SpaL

NC_021902
(Salmonella enterica USMARC-S3124.1)

2e-71

876) NAL212_0483
( YP_004293590.1 )

flagellar protein export ATPase FliI

NC_015222
(Nitrosomonas sp. AL212)

2e-71

877) Slit_0595
( YP_003523222.1 )

flagellar protein export ATPase FliI

NC_013959
(Sideroxydans lithotrophicus ES-1)

3e-71

878) fliI
( YP_578560.1 )

flagellum-specific ATP synthase

NC_007964
(Nitrobacter hamburgensis X14)

2e-71

879) DSC_03140
( YP_004929322.1 )

flagellum-specific ATP synthase

NC_016147
(Pseudoxanthomonas spadix BD-a59)

2e-71

880) fliI
( YP_003517010.1 )

flagellum-specific ATP synthase

NC_013949
(Helicobacter mustelae 12198)

2e-71

881) fliI
( YP_002955885.1 )

flagellum-specific ATP synthase

NC_012796
(Desulfovibrio magneticus RS-1)

3e-71

882) fliI
( YP_003931424.1 )

flagellum-specific ATP synthase

NC_014562
(Pantoea vagans C9-1)

3e-71

883) STMDT12_C29430
( YP_005248639.1 )

flagellum-specific ATP synthase SpaL

NC_016860
(Salmonella enterica T000240)

3e-71

884) Sulku_2523
( YP_004061382.1 )

ATPase, fl II/yscn family

NC_014762
(Sulfuricurvum kujiense DSM 16994)

3e-71

885) invC
( YP_001907837.1 )

ATP synthase SpaL

NC_010694
(Erwinia tasmaniensis Et1/99)

3e-71

886) fliI
( YP_419991.1 )

flagellum-specific ATP synthase

NC_007626
(Magnetospirillum magneticum AMB-1)

4e-71

887) fliI
( YP_005453125.1 )

flagellar protein export ATPase

NC_017082
(Bradyrhizobium sp. S23321)

6e-71

888) fliI
( YP_394594.1 )

flagellum-specific ATP synthase

NC_007575
(Sulfurimonas denitrificans ATCC 33889)

6e-71

889) fliI
( YP_006364975.1 )

flagellum-specific ATP synthase

NC_017955
(Modestobacter marinus BC501)

7e-71

890) fliI
( YP_783174.1 )

flagellum-specific ATP synthase

NC_008435
(Rhodopseudomonas palustris BisA53)

7e-71

891) fliI
( YP_003624062.1 )

flagellum-specific ATP synthase

NC_014145
(Thiomonas sp. 3As)

8e-71

892) fliI
( YP_001437355.1 )

flagellum-specific ATP synthase

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

9e-71

893) fliI
( YP_006342572.1 )

flagellar protein export ATPase FliI

NC_017933
(Cronobacter sakazakii ES15)

9e-71

894) fliI
( YP_007440075.1 )

flagellum-specific ATP synthase

NC_020260
(Cronobacter sakazakii Sp291)

9e-71

895) fliI
( YP_003211021.1 )

flagellum-specific ATP synthase

NC_013282
(Cronobacter turicensis z3032)

9e-71

896) Sputcn32_3473
( YP_001184982.1 )

FliI/YscN family ATPase

NC_009438
(Shewanella putrefaciens CN-32)

1e-70

897) Sputw3181_0466
( YP_961871.1 )

FliI/YscN family ATPase

NC_008750
(Shewanella sp. W3-18-1)

1e-70

898) invC
( NP_902298.1 )

ATP synthase SpaL

NC_005085
(Chromobacterium violaceum ATCC 12472)

1e-70

899) B649_11695
( YP_007529345.1 )

hypothetical protein

NC_020505
(uncultured Sulfuricurvum sp. RIFRC-1)

1e-70

900) fliI
( NP_871060.1 )

hypothetical protein

NC_004344
(Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis)

1e-70

901) D781_2723
( YP_007345159.1 )

flagellar protein export ATPase FliI

NC_020064
(Serratia marcescens FGI94)

2e-70

902) fliI
( YP_003041453.1 )

flagellum-specific ATP synthase

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

2e-70

903) SG2088
( YP_455768.1 )

ATP synthase SpaL

NC_007712
(Sodalis glossinidius morsitans)

2e-70

904) fliI
( YP_003003906.1 )

flagellum-specific ATP synthase

NC_012912
(Dickeya zeae Ech1591)

2e-70

905) fliI
( YP_002576039.1 )

flagellum-specific ATP synthase

NC_012039
(Campylobacter lari RM2100)

2e-70

906) fliI
( YP_436293.1 )

flagellum-specific ATP synthase

NC_007645
(Hahella chejuensis KCTC 2396)

3e-70

907) rhcN
( NP_444161.1 )

ATPase RhcN for type III secretion

NC_000914
(Sinorhizobium fredii NGR234)

3e-70

908) R2APBS1_2994
( YP_007591304.1 )

flagellar protein export ATPase FliI

NC_020541
(Rhodanobacter sp. 2APBS1)

3e-70

909) fliI
( YP_001682651.1 )

flagellum-specific ATP synthase

NC_010338
(Caulobacter sp. K31)

3e-70

910) Sbal175_0434
( YP_006019035.1 )

FliI/YscN family ATPase

NC_017571
(Shewanella baltica BA175)

3e-70

911) fliI
( YP_689431.1 )

flagellum-specific ATP synthase

NC_008258
(Shigella flexneri 8401)

3e-70

912) Sbal117_4134
( YP_006039284.1 )

FliI/YscN family ATPase

NC_017579
(Shewanella baltica OS117)

3e-70

913) fliI
( YP_002129696.1 )

flagellum-specific ATP synthase

NC_011144
(Phenylobacterium zucineum HLK1)

3e-70

914) fliI
( YP_002329572.1 )

flagellum-specific ATP synthase

NC_011601
(Escherichia coli E2348/69)

4e-70

915) M301_1005
( YP_003673966.1 )

flagellar protein export ATPase FliI

NC_014207
(Methylotenera versatilis 301)

4e-70

916) EAM_1561
( YP_003538643.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

4e-70

917) spaI3
( YP_003530940.1 )

type III secretion system ATPase SpaI/InvC

NC_013961
(Erwinia amylovora CFBP1430)

4e-70

918) swp_1523
( YP_002310895.1 )

ATPase FliI/YscN

NC_011566
(Shewanella piezotolerans WP3)

4e-70

919) fliI
( YP_006579293.1 )

flagellum-specific ATP synthase

NC_018405
(Enterobacter cloacae ENHKU01)

4e-70

920) fliI
( YP_002297961.1 )

flagellum-specific ATP synthase

NC_011420
(Rhodospirillum centenum SW)

4e-70

921) Sbal_3976
( YP_001052313.1 )

FliI/YscN family ATPase

NC_009052
(Shewanella baltica OS155)

4e-70

922) hrcN
( YP_003539964.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

5e-70

923) fliI
( YP_006915418.1 )

flagellum-specific ATP synthase

NC_018868
(Simiduia agarivorans SA1)

5e-70

924) Ser39006_3167
( YP_008523549.1 )

flagellar protein export ATPase FliI

NC_022268
(Serratia sp. ATCC 39006)

5e-70

925) fliI
( YP_587392.1 )

flagellum-specific ATP synthase

NC_007974
(Cupriavidus metallidurans CH34)

5e-70

926) Dd586_1535
( YP_003333108.1 )

flagellar protein export ATPase FliI

NC_013592
(Dickeya dadantii Ech586)

5e-70

927) fliI
( YP_006144289.1 )

flagellum-specific ATP synthase

NC_017646
(Escherichia coli CE10)

5e-70

928) hrcN
( YP_003529890.1 )

ATP synthase

NC_013961
(Erwinia amylovora CFBP1430)

6e-70

929) fliI1
( YP_006139121.1 )

Flagellum-specific ATP synthase

NC_017644
(Escherichia coli NA114)

6e-70

930) fliI
( YP_005801738.1 )

flagellum-specific ATP synthase

NC_017390
(Erwinia pyrifoliae DSM 12163)

6e-70

931) fliI
( YP_002647965.1 )

flagellum-specific ATP synthase

NC_012214
(Erwinia pyrifoliae Ep1/96)

6e-70

932) fliI
( YP_005816722.1 )

Flagellum-specific ATP synthase

NC_017445
(Erwinia sp. Ejp617)

6e-70

933) Saut_2145
( YP_003893199.1 )

flagellar protein export ATPase FliI

NC_014506
(Sulfurimonas autotrophica DSM 16294)

6e-70

934) Fbal_1038
( YP_003912321.1 )

flagellar protein export ATPase FliI

NC_014541
(Ferrimonas balearica DSM 9799)

1e-69

935) fliI
( YP_001100154.1 )

flagellum-specific ATP synthase

NC_009138
(Herminiimonas arsenicoxydans )

1e-69

936) Sput200_2738
( YP_006010608.1 )

flagellar protein export ATPase FliI

NC_017566
(Shewanella putrefaciens 200)

1e-69

937) fliI
( YP_001184093.1 )

flagellum-specific ATP synthase

NC_009438
(Shewanella putrefaciens CN-32)

1e-69

938) fliI
( YP_962827.1 )

flagellum-specific ATP synthase

NC_008750
(Shewanella sp. W3-18-1)

1e-69

939) fliI
( YP_268247.1 )

flagellum-specific ATP synthase

NC_003910
(Colwellia psychrerythraea 34H)

1e-69

940) fliI
( YP_003613707.1 )

flagellum-specific ATP synthase

NC_014121
(Enterobacter cloacae ATCC 13047)

1e-69

941) fliI
( YP_002383057.1 )

flagellum-specific ATP synthase

NC_011740
(Escherichia fergusonii ATCC 35469)

1e-69

942) Nit79A3_0497
( YP_004693776.1 )

flagellar protein export ATPase FliI

NC_015731
(Nitrosomonas sp. Is79A3)

1e-69

943) fliI
( YP_003234936.1 )

flagellum-specific ATP synthase FliI

NC_013364
(Escherichia coli 11128)

1e-69

944) fliI
( YP_852994.1 )

flagellum-specific ATP synthase

NC_008563
(Escherichia coli APEC O1)

1e-69

945) fliI
( YP_006101238.1 )

flagellar protein export ATPase FliI

NC_017628
(Escherichia coli IHE3034)

1e-69

946) fliI
( YP_008571872.1 )

Flagellum-specific ATP synthase

NC_022370
(Escherichia coli PMV-1)

1e-69

947) fliI
( YP_002391711.1 )

flagellum-specific ATP synthase

NC_011742
(Escherichia coli S88)

1e-69

948) fliI
( YP_006110399.1 )

flagellum-specific ATP synthase

NC_017632
(Escherichia coli UM146)

1e-69

949) fliI
( YP_541145.1 )

flagellum-specific ATP synthase

NC_007946
(Escherichia coli UTI89)

1e-69

950) SG0565
( YP_454245.1 )

ATP synthase SpaL

NC_007712
(Sodalis glossinidius morsitans)

1e-69

951) Arnit_2476
( YP_003656633.1 )

FliI/YscN family ATPase

NC_014166
(Arcobacter nitrofigilis DSM 7299)

1e-69

952) SYO3AOP1_1640
( YP_001931792.1 )

flagellar protein export ATPase FliI

NC_010730
(Sulfurihydrogenibium sp. YO3AOP1)

7e-70

953) fliI
( YP_001353128.1 )

FliI flagellum specific ATP synthase

NC_009659
(Janthinobacterium sp. Marseille)

8e-70

954) Entas_2737
( YP_004829249.1 )

FliI/YscN family ATPase

NC_015968
(Enterobacter asburiae LF7a)

8e-70

955) fliI
( YP_669777.1 )

flagellum-specific ATP synthase

NC_008253
(Escherichia coli 536)

8e-70

956) fliI
( YP_006106260.1 )

flagellum-specific ATP synthase

NC_017631
(Escherichia coli ABU 83972)

8e-70

957) fliI
( NP_754250.1 )

flagellum-specific ATP synthase

NC_004431
(Escherichia coli CFT073)

8e-70

958) fliI
( YP_006154282.1 )

flagellum-specific ATP synthase

NC_017652
(Escherichia coli clone D i14)

8e-70

959) fliI
( YP_006149363.1 )

flagellum-specific ATP synthase

NC_017651
(Escherichia coli clone D i2)

8e-70

960) fliI
( YP_002412953.1 )

flagellum-specific ATP synthase

NC_011751
(Escherichia coli UMN026)

8e-70

961) fliI
( YP_005727658.1 )

Flagellum-specific ATP synthase

NC_017328
(Shigella flexneri 2002017)

8e-70

962) fliI
( NP_837552.1 )

flagellum-specific ATP synthase

NC_004741
(Shigella flexneri 2457T)

8e-70

963) fliI
( NP_707826.1 )

flagellum-specific ATP synthase

NC_004337
(Shigella flexneri 301)

8e-70

964) Dd703_1543
( YP_002987165.1 )

FliI/YscN family ATPase

NC_012880
(Dickeya dadantii Ech703)

8e-70

965) fliI
( YP_002407127.1 )

flagellum-specific ATP synthase

NC_011750
(Escherichia coli IAI39)

9e-70

966) fliI
( YP_006184779.1 )

flagellum-specific ATP synthase FliI

NC_017671
(Stenotrophomonas maltophilia D457)

2e-69

967) Sbal175_1433
( YP_006020016.1 )

flagellar protein export ATPase FliI

NC_017571
(Shewanella baltica BA175)

2e-69

968) Sbal117_3062
( YP_006038244.1 )

flagellar protein export ATPase FliI

NC_017579
(Shewanella baltica OS117)

2e-69

969) fliI
( YP_001051274.1 )

flagellum-specific ATP synthase

NC_009052
(Shewanella baltica OS155)

2e-69

970) fliI
( YP_001367130.1 )

flagellum-specific ATP synthase

NC_009665
(Shewanella baltica OS185)

2e-69

971) fliI
( YP_001555490.1 )

flagellum-specific ATP synthase

NC_009997
(Shewanella baltica OS195)

2e-69

972) fliI
( YP_002357370.1 )

flagellum-specific ATP synthase

NC_011663
(Shewanella baltica OS223)

2e-69

973) Sbal678_3076
( YP_005274275.1 )

flagellar protein export ATPase FliI

NC_016901
(Shewanella baltica OS678)

2e-69

974) fliI
( YP_006478307.1 )

flagellum-specific ATP synthase

NC_018079
(Enterobacter cloacae SDM)

2e-69

975) fliI
( YP_001177252.1 )

flagellum-specific ATP synthase

NC_009436
(Enterobacter sp. 638)

2e-69

976) fliI
( YP_001093497.1 )

flagellum-specific ATP synthase

NC_009092
(Shewanella loihica PV-4)

2e-69

977) fliI
( YP_004751616.1 )

flagellum-specific ATP synthase

NC_015856
(Collimonas fungivorans Ter331)

2e-69

978) fliI
( YP_003229807.1 )

flagellum-specific ATP synthase

NC_013361
(Escherichia coli 11368)

2e-69

979) fliI
( YP_003222118.1 )

flagellum-specific ATP synthase FliI

NC_013353
(Escherichia coli 12009)

2e-69

980) fliI
( YP_006769627.1 )

flagellum-specific ATP synthase

NC_018650
(Escherichia coli 2009EL-2050)

2e-69

981) fliI
( YP_006783752.1 )

flagellum-specific ATP synthase

NC_018661
(Escherichia coli 2009EL-2071)

2e-69

982) fliI
( YP_006778681.1 )

flagellum-specific ATP synthase

NC_018658
(Escherichia coli 2011C-3493)

2e-69

983) fliI
( YP_002403213.1 )

flagellum-specific ATP synthase

NC_011748
(Escherichia coli 55989)

2e-69

984) fliI
( YP_007381872.1 )

flagellum-specific ATP synthase

NC_020163
(Escherichia coli APEC O78)

2e-69

985) fliI
( YP_001724680.1 )

flagellum-specific ATP synthase

NC_010468
(Escherichia coli ATCC 8739)

2e-69

986) EcDH1_1707
( YP_006091657.1 )

FliI/YscN family ATPase

NC_017625
(Escherichia coli DH1)

2e-69

987) fliI
( YP_006129282.1 )

flagellum-specific ATP synthase

NC_017638
(Escherichia coli DH1)

2e-69

988) fliI
( YP_001463243.1 )

flagellum-specific ATP synthase

NC_009801
(Escherichia coli E24377A)

2e-69

989) fliI
( YP_002271057.1 )

flagellum-specific ATP synthase

NC_011353
(Escherichia coli EC4115)

2e-69

990) fliI
( YP_002398148.1 )

flagellum-specific ATP synthase

NC_011745
(Escherichia coli ED1a)

2e-69

991) fliI
( NP_288402.2 )

flagellum-specific ATP synthase

NC_002655
(Escherichia coli EDL933)

2e-69

992) fliI
( YP_003035941.1 )

flagellum-specific ATP synthase

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

2e-69

993) ETEC_2044
( YP_006115610.1 )

flagellum-specific ATP synthase

NC_017633
(Escherichia coli ETEC H10407)

2e-69

994) fliI
( YP_001458730.1 )

flagellum-specific ATP synthase

NC_009800
(Escherichia coli HS)

2e-69

995) fliI
( YP_002387434.1 )

flagellum-specific ATP synthase

NC_011741
(Escherichia coli IAI1)

2e-69

996) fliI
( YP_001730905.1 )

flagellum-specific ATP synthase

NC_010473
(Escherichia coli K-12)

2e-69

997) fliI
( YP_002926942.1 )

flagellum-specific ATP synthase

NC_012759
(Escherichia coli K-12)

2e-69

998) fliI
( YP_490195.1 )

flagellum-specific ATP synthase

NC_007779
(Escherichia coli K-12)

2e-69

999) fliI
( NP_416451.1 )

flagellum-specific ATP synthase

NC_000913
(Escherichia coli K12)

2e-69

1000) EKO11_1833
( YP_005277514.1 )

FliI/YscN family ATPase

NC_016902
(Escherichia coli KO11FL)

2e-69

1001) fliI
( YP_006164926.1 )

flagellum-specific ATP synthase

NC_017660
(Escherichia coli KO11FL)

2e-69

1002) fliI
( YP_002556814.1 )

flagellum-specific ATP synthase

NC_011993
(Escherichia coli LF82)

2e-69

1003) fliI
( YP_008565113.1 )

ATP synthase

NC_022364
(Escherichia coli LY180)

2e-69

1004) fliI
( YP_006120295.1 )

flagellum-specific ATP synthase

NC_017634
(Escherichia coli NRG 857C)

2e-69

1005) fliI
( YP_006168118.1 )

Flagellar protein export ATPase FliI

NC_017663
(Escherichia coli P12b)

2e-69

1006) fliI
( NP_310707.1 )

flagellum-specific ATP synthase

NC_002695
(Escherichia coli Sakai)

2e-69

1007) fliI
( YP_002293447.1 )

flagellum-specific ATP synthase

NC_011415
(Escherichia coli SE11)

2e-69

1008) ECSF_1793
( YP_003349783.1 )

flagellum-specific ATP synthase

NC_013654
(Escherichia coli SE15)

2e-69

1009) fliI
( YP_003078428.1 )

flagellum-specific ATP synthase

NC_013008
(Escherichia coli TW14359)

2e-69

1010) fliI
( YP_006134164.1 )

flagellar protein export ATPase FliI

NC_017641
(Escherichia coli UMNK88)

2e-69

1011) fliI
( YP_006124810.1 )

flagellum-specific ATP synthase

NC_017635
(Escherichia coli W)

2e-69

1012) fliI
( YP_006173521.1 )

flagellum-specific ATP synthase

NC_017664
(Escherichia coli W)

2e-69

1013) fliI
( YP_006313344.1 )

flagellum-specific ATP synthase

NC_017906
(Escherichia coli Xuzhou21)

2e-69

1014) fliI
( YP_049823.1 )

flagellum-specific ATP synthase

NC_004547
(Pectobacterium atrosepticum SCRI1043)

2e-69

1015) fliI
( YP_005456903.1 )

flagellum-specific ATP synthase

NC_016822
(Shigella sonnei 53G)

2e-69

1016) fliI
( YP_310900.1 )

flagellum-specific ATP synthase

NC_007384
(Shigella sonnei Ss046)

2e-69

1017) EAM_2663
( YP_003539730.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

2e-69

1018) spaI1
( YP_003530139.1 )

type III secretion system ATPase SpaI/InvC

NC_013961
(Erwinia amylovora CFBP1430)

2e-69

1019) fliI
( YP_003539646.1 )

flagellum-specific ATP synthase

NC_013971
(Erwinia amylovora ATCC 49946)

2e-69

1020) fliI3
( YP_003532046.1 )

flagellum-specific ATP synthase

NC_013961
(Erwinia amylovora CFBP1430)

2e-69

1021) BurJV3_1934
( YP_004792485.1 )

flagellar protein export ATPase FliI

NC_015947
(Stenotrophomonas maltophilia JV3)

3e-69

1022) fliI
( YP_001972081.1 )

flagellum-specific ATP synthase

NC_010943
(Stenotrophomonas maltophilia K279a)

3e-69

1023) Smal_1877
( YP_002028264.1 )

FliI/YscN family ATPase

NC_011071
(Stenotrophomonas maltophilia R551-3)

3e-69

1024) fliI
( YP_003365576.1 )

flagellum-specific ATP synthase

NC_013716
(Citrobacter rodentium ICC168)

3e-69

1025) W5S_1799
( YP_006282762.1 )

Flagellum-specific ATP synthase FliI

NC_017845
(Pectobacterium sp. SCC3193)

3e-69

1026) fliI
( YP_003259276.1 )

flagellum-specific ATP synthase

NC_013421
(Pectobacterium wasabiae WPP163)

3e-69

1027) fliI
( YP_001019765.1 )

flagellar biosynthesis ATPase

NC_008825
(Methylibium petroleiphilum PM1)

3e-69

1028) B932_0338
( YP_006982878.1 )

protein FliI

NC_019396
(Gluconobacter oxydans H24)

3e-69

1029) fliI
( NP_718780.1 )

flagellar protein export ATPase FliI

NC_004347
(Shewanella oneidensis MR-1)

3e-69

1030) fliI
( YP_001474795.1 )

flagellum-specific ATP synthase

NC_009831
(Shewanella sediminis HAW-EB3)

3e-69

1031) fliI
( YP_005402311.1 )

flagellum-specific ATP synthase

NC_017047
(Rahnella aquatilis HX2)

3e-69

1032) Rahaq_2492
( YP_004213226.1 )

flagellar protein export ATPase FliI

NC_015061
(Rahnella sp. Y9602)

3e-69

1033) BN865_02150c
( YP_008472918.1 )

Flagellum-specific ATP synthase FliI

NC_022132
(Campylobacter coli 76339)

3e-69

1034) fliI
( YP_749876.1 )

flagellum-specific ATP synthase

NC_008345
(Shewanella frigidimarina NCIMB 400)

4e-69

1035) S58_72220
( YP_007516773.1 )

type III secretion system ATPase

NC_020453
(Bradyrhizobium oligotrophicum S58)

4e-69

1036) Celgi_0460
( YP_004599550.1 )

ATPase, FliI/YscN family

NC_015671
(Cellvibrio gilvus ATCC 13127)

4e-69

1037) fliI
( YP_006159439.1 )

flagellum-specific ATP synthase

NC_017656
(Escherichia coli RM12579)

4e-69

1038) fliI
( YP_003499936.1 )

flagellum-specific ATP synthase

NC_013941
(Escherichia coli CB9615)

4e-69

1039) fliI
( YP_001743304.1 )

flagellum-specific ATP synthase

NC_010498
(Escherichia coli SMS-3-5)

4e-69

1040) Spea_0080
( YP_001499944.1 )

FliI/YscN family ATPase

NC_009901
(Shewanella pealeana ATCC 700345)

4e-69

1041) fliI
( YP_001501226.1 )

flagellum-specific ATP synthase

NC_009901
(Shewanella pealeana ATCC 700345)

5e-69

1042) PCC21_026830
( YP_006647339.1 )

hypothetical protein

NC_018525
(Pectobacterium carotovorum PCC21)

5e-69

1043) Tint_1218
( YP_003642936.1 )

flagellar protein export ATPase FliI

NC_014153
(Thiomonas intermedia K12)

5e-69

1044) fliI
( YP_003883608.1 )

flagellum-specific ATP synthase fliI

NC_014500
(Dickeya dadantii 3937)

5e-69

1045) fliI
( YP_003556184.1 )

flagellum-specific ATP synthase FliI

NC_014012
(Shewanella violacea DSS12)

6e-69

1046) fliI
( YP_004952734.1 )

flagellum-specific ATP synthase

NC_016514
(Enterobacter cloacae EcWSU1)

7e-69

1047) fliI
( YP_003742037.1 )

flagellum-specific ATP synthase

NC_014306
(Erwinia billingiae Eb661)

1e-68

1048) PC1_2578
( YP_003018145.1 )

ATPase, FliI/YscN family

NC_012917
(Pectobacterium carotovorum PC1)

1e-68

1049) fliI
( YP_006096405.1 )

flagellum-specific ATP synthase

NC_017626
(Escherichia coli 042)

1e-68

1050) ST548_p6305
( YP_007388293.1 )

Flagellum-specific ATP synthase FliI

NC_020181
(Enterobacter aerogenes EA1509E)

7e-69

1051) fliI
( YP_004593344.1 )

flagellum-specific ATP synthase

NC_015663
(Enterobacter aerogenes KCTC 2190)

7e-69

1052) fliI
( YP_001673676.1 )

flagellum-specific ATP synthase

NC_010334
(Shewanella halifaxensis HAW-EB4)

7e-69

1053) Deba_0915
( YP_003806879.1 )

flagellar protein export ATPase FliI

NC_014365
(Desulfarculus baarsii DSM 2075)

7e-69

1054) DGI_0502
( YP_008589581.1 )

putative flagellar protein export ATPase FliI

NC_022444
(Desulfovibrio gigas ATCC 19364)

8e-69

1055) CYCME_1873
( YP_008374547.1 )

Flagellar biosynthesis/type III secretory pathway ATPase

NC_021917
(Cycloclasticus zancles 7-ME)

8e-69

1056) Q91_0720
( YP_006837261.1 )

flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN

NC_018697
(Cycloclasticus sp. P1; MCCC 1A01040)

9e-69

1057) Bresu_1207
( YP_003818142.1 )

ATPase, FliI/YscN family

NC_014375
(Brevundimonas subvibrioides ATCC 15264)

9e-69

1058) fliI
( YP_004467975.1 )

flagellum-specific ATP synthase

NC_015554
(Alteromonas sp. SN2)

2e-68

1059) D782_1694
( YP_007339878.1 )

flagellar protein export ATPase FliI

NC_020063
(Enterobacteriaceae bacterium FGI 57)

2e-68

1060) fliI
( YP_001465995.1 )

flagellum-specific ATP synthase

NC_009802
(Campylobacter concisus 13826)

2e-68

1061) fliI
( YP_006822026.1 )

ATPase FliI/YscN

NC_018691
(Alcanivorax dieselolei B5)

2e-68

1062) A3UG_14770
( YP_006478382.1 )

flagellum-specific ATP synthase

NC_018079
(Enterobacter cloacae SDM)

2e-68

1063) fliI
( YP_999914.1 )

flagellum-specific ATP synthase

NC_008787
(Campylobacter jejuni 81-176)

2e-68

1064) fliI
( YP_001481760.1 )

flagellum-specific ATP synthase

NC_009839
(Campylobacter jejuni 81116)

2e-68

1065) ICDCCJ07001_188
( YP_004065798.1 )

flagellum-specific ATP synthase FliI

NC_014802
(Campylobacter jejuni ICDCCJ07001)

2e-68

1066) fliI
( YP_005657166.1 )

Flagellum-specific ATP synthase

NC_017280
(Campylobacter jejuni M1)

2e-68

1067) fliI
( YP_004074051.1 )

flagellum-specific ATP synthase

NC_014810
(Helicobacter felis ATCC 49179)

2e-68

1068) Nmul_A1348
( YP_412043.1 )

ATPase FliI/YscN

NC_007614
(Nitrosospira multiformis ATCC 25196)

3e-68

1069) fliI
( YP_008230976.1 )

ATP synthase

NC_021741
(Serratia liquefaciens ATCC 27592)

3e-68

1070) Y11_14231
( YP_006004922.1 )

flagellum-specific ATP synthase FliI

NC_017564
(Yersinia enterocolitica Y11)

3e-68

1071) fliI
( YP_007406764.1 )

flagellum-specific ATP synthase

NC_020211
(Serratia marcescens WW4)

3e-68

1072) fliI
( YP_001397442.1 )

flagellum-specific ATP synthase

NC_009707
(Campylobacter jejuni 269.97)

3e-68

1073) fliI
( YP_178212.1 )

flagellum-specific ATP synthase

NC_003912
(Campylobacter jejuni RM1221)

3e-68

1074) fliI
( YP_005658797.1 )

Flagellum-specific ATP synthase FliI

NC_017281
(Campylobacter jejuni S3)

3e-68

1075) YE105_C1717
( YP_004297916.1 )

flagellum-specific ATP synthase

NC_015224
(Yersinia enterocolitica 105.5R(r))

3e-68

1076) fliI
( YP_001356097.1 )

flagellar-specific ATP synthase FliI

NC_009662
(Nitratiruptor sp. SB155-2)

4e-68

1077) fliI
( YP_002296460.1 )

flagellum-specific ATP synthase

NC_011420
(Rhodospirillum centenum SW)

5e-68

1078) fliI
( YP_070227.1 )

flagellum-specific ATP synthase

NC_006155
(Yersinia pseudotuberculosis IP 32953)

5e-68

1079) fliI
( YP_001413446.1 )

flagellum-specific ATP synthase

NC_009719
(Parvibaculum lavamentivorans DS-1)

6e-68

1080) fliI
( YP_003613782.1 )

flagellum-specific ATP synthase

NC_014121
(Enterobacter cloacae ATCC 13047)

6e-68

1081) fliI
( YP_006218169.1 )

flagellum-specific ATP synthase

NC_017731
(Providencia stuartii MRSN 2154)

6e-68

1082) Thivi_0361
( YP_006412555.1 )

flagellar protein export ATPase FliI

NC_018012
(Thiocystis violascens DSM 198)

6e-68

1083) fliI
( YP_001006744.1 )

flagellum-specific ATP synthase

NC_008800
(Yersinia enterocolitica 8081)

6e-68

1084) fliI
( YP_001872253.1 )

flagellum-specific ATP synthase

NC_010634
(Yersinia pseudotuberculosis PB1/+)

7e-68

1085) fliI
( YP_001479179.1 )

flagellum-specific ATP synthase

NC_009832
(Serratia proteamaculans 568)

7e-68

1086) fliI
( NP_908297.1 )

flagellum-specific ATP synthase

NC_005090
(Wolinella succinogenes DSM 1740)

7e-68

1087) M635_05305
( YP_008293975.1 )

ATP synthase

NC_021834
(Campylobacter jejuni 32488)

9e-68

1088) flil
( YP_005655555.1 )

flagellum-specific ATP synthase

NC_017279
(Campylobacter jejuni IA3902)

9e-68

1089) fliI
( YP_002343653.1 )

flagellum-specific ATP synthase

NC_002163
(Campylobacter jejuni NCTC 11168)

9e-68

1090) fliI
( YP_006632402.1 )

flagellum-specific ATP synthase

NC_018521
(Campylobacter jejuni NCTC 11168-BN148)

9e-68

1091) fliI
( YP_006857299.1 )

flagellum-specific ATP synthase

NC_018709
(Campylobacter jejuni PT14)

9e-68

1092) fliI
( YP_008561548.1 )

flagellum-specific ATP synthase

NC_022362
(jejuni jejuni 00-2425)

9e-68

1093) fliI
( YP_008539817.1 )

flagellum-specific ATP synthase

NC_022352
(jejuni jejuni 00-2426)

9e-68

1094) fliI
( YP_008538098.1 )

flagellum-specific ATP synthase

NC_022351
(jejuni jejuni 00-2538)

9e-68

1095) fliI
( YP_008541552.1 )

flagellum-specific ATP synthase

NC_022353
(jejuni jejuni 00-2544)

9e-68

1096) fliI
( YP_007550625.1 )

flagellar-specific ATP synthase

NC_020516
(Azoarcus sp. KH32C)

1e-67

1097) fliI
( YP_003775464.1 )

flagellum-specific ATP synthase

NC_014323
(Herbaspirillum seropedicae SmR1)

1e-67

1098) Afer_0140
( YP_003108782.1 )

ATPase, FliI/YscN family

NC_013124
(Acidimicrobium ferrooxidans DSM 10331)

1e-67

1099) fliI
( YP_001401262.1 )

flagellum-specific ATP synthase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

1e-67

1100) KKY_2417
( YP_004900175.1 )

flagellum-specific ATP synthase FliI

NC_016078
(Pelagibacterium halotolerans B2)

1e-67

1101) PSTAA_0179
( YP_005936842.1 )

FliI/YscN family ATPase

NC_017532
(Pseudomonas stutzeri DSM 4166)

1e-67

1102) Psest_4169
( YP_007242269.1 )

FliI/YscN family ATPase

NC_019936
(Pseudomonas stutzeri RCH2)

1e-67

1103) fliI
( YP_008159810.1 )

ATP synthase

NC_021659
(Serratia plymuthica S13)

2e-67

1104) fliI
( YP_008534259.1 )

flagellum-specific ATP synthase

NC_022347
(Campylobacter coli CVM N29710)

2e-67

1105) PMI2692
( YP_002152393.1 )

ATP synthase SpaL

NC_010554
(Proteus mirabilis HI4320)

2e-67

1106) fliI
( YP_003899431.1 )

flagellar protein export ATPase FliI

NC_014532
(Halomonas elongata DSM 2581)

2e-67

1107) MU9_1799
( YP_007505218.1 )

Flagellum-specific ATP synthase FliI

NC_020418
(Morganella morganii KT)

2e-67

1108) SerAS9_3033
( YP_004506413.1 )

flagellar protein export ATPase FliI

NC_015567
(Serratia plymuthica AS9)

3e-67

1109) SerAS12_3034
( YP_004501460.1 )

flagellar protein export ATPase FliI

NC_015566
(Serratia sp. AS12)

3e-67

1110) SerAS13_3036
( YP_006025875.1 )

flagellar protein export ATPase FliI

NC_017573
(Serratia sp. AS13)

3e-67

1111) fliI
( YP_001721124.1 )

flagellum-specific ATP synthase

NC_010465
(Yersinia pseudotuberculosis YPIII)

3e-67

1112) Acid345_1649
( YP_590725.1 )

ATPase FliI/YscN

NC_008009
(Candidatus Koribacter versatilis Ellin345)

4e-67

1113) CKO_02894
( YP_001454436.1 )

hypothetical protein

NC_009792
(Citrobacter koseri ATCC BAA-895)

4e-67

1114) fliI
( YP_008112702.1 )

flagellum-specific ATP synthase

NC_021505
(Pseudomonas putida NBRC 14164)

4e-67

1115) fliI
( YP_003520593.1 )

FliI

NC_013956
(Pantoea ananatis LMG 20103)

6e-67

1116) fliI
( YP_005934486.1 )

flagellum-specific ATP synthase FliI

NC_017531
(Pantoea ananatis AJ13355)

7e-67

1117) fliI
( YP_005195234.1 )

flagellum-specific ATP synthase FliI

NC_016816
(Pantoea ananatis LMG 5342)

7e-67

1118) PAGR_g1743
( YP_005992482.1 )

flagellum-specific ATP synthase FliI

NC_017554
(Pantoea ananatis PA13)

7e-67

1119) fliI
( YP_008138952.1 )

flagellum-specific ATP synthase FliI

NC_021591
(Serratia odorifera 4Rx13)

1e-66

1120) Mmol_0930
( YP_003048366.1 )

FliI/YscN family ATPase

NC_012968
(Methylotenera mobilis JLW8)

1e-66

1121) Mfla_1975
( YP_546083.1 )

ATPase FliI/YscN

NC_007947
(Methylobacillus flagellatus KT)

1e-66

1122) fliI
( YP_008104547.1 )

flagellum-specific ATP synthase FliI

NC_021499
(Pseudomonas resinovorans NBRC 106553)

1e-66

1123) SCD_n01230
( YP_008546091.1 )

flagellar protein export ATPase FliI

NC_022357
(Sulfuricella denitrificans skB26)

1e-66

1124) BB2000_2692
( YP_008399207.1 )

ATP synthase SpaL

NC_022000
(Proteus mirabilis BB2000)

1e-66

1125) fliI
( NP_994327.1 )

flagellum-specific ATP synthase

NC_005810
(Yersinia pestis 91001)

1e-66

1126) fliI
( YP_005519995.1 )

flagellum-specific ATP synthase

NC_017168
(Yersinia pestis A1122)

1e-66

1127) fliI
( YP_652979.1 )

flagellum-specific ATP synthase

NC_008150
(Yersinia pestis Antiqua)

1e-66

1128) fliI
( YP_002345779.1 )

flagellum-specific ATP synthase

NC_003143
(Yersinia pestis CO92)

1e-66

1129) fliI
( YP_005503837.1 )

flagellum-specific ATP synthase

NC_017154
(Yersinia pestis D106004)

1e-66

1130) fliI
( YP_005507708.1 )

flagellum-specific ATP synthase

NC_017160
(Yersinia pestis D182038)

1e-66

1131) lfiI
( YP_005625577.1 )

lateral flagellar assembly ATPase

NC_017265
(Yersinia pestis Harbin 35)

1e-66

1132) fliI
( NP_670759.1 )

flagellum-specific ATP synthase

NC_004088
(Yersinia pestis KIM)

1e-66

1133) fliI
( YP_646507.1 )

flagellum-specific ATP synthase

NC_008149
(Yersinia pestis Nepal516)

1e-66

1134) fliI
( YP_003566843.1 )

flagellum-specific ATP synthase

NC_014029
(Yersinia pestis Z176003)

1e-66

1135) JCM7686_1778
( YP_008404646.1 )

ATP synthase in type III secretion protein SctN

NC_022041
(Paracoccus aminophilus JCM 7686)

8e-67

1136) PSJM300_00930
( YP_006522626.1 )

FliI/YscN family ATPase

NC_018177
(Pseudomonas stutzeri DSM 10701)

8e-67

1137) fliI
( YP_007615673.1 )

flagellum-specific ATP synthase

NC_020561
(Sphingomonas sp. MM-1)

2e-66

1138) Tbd_1603
( YP_315361.1 )

flagellar biosynthesis/type III secretory pathway ATPase FliI

NC_007404
(Thiobacillus denitrificans ATCC 25259)

2e-66

1139) fliI
( YP_004846435.1 )

flagellar protein export ATPase FliI

NC_016002
(Pseudogulbenkiania sp. NH8B)

2e-66

1140) fliI
( YP_001399626.1 )

flagellum-specific ATP synthase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

2e-66

1141) fliI
( YP_005436520.1 )

flagellar biosynthesis ATPase FilI

NC_017075
(Rubrivivax gelatinosus IL144)

3e-66

1142) fliI
( YP_001923459.1 )

flagellum-specific ATP synthase

NC_010725
(Methylobacterium populi BJ001)

3e-66

1143) PSEBR_a2419
( YP_004353702.1 )

flagellum-specific ATP synthase

NC_015379
(Pseudomonas brassicacearum NFM421)

3e-66

1144) fliI
( YP_006370652.1 )

flagellum-specific ATP synthase

NC_017956
(Tistrella mobilis KA081020-065)

3e-66

1145) SAR116_0829
( YP_003551156.1 )

ATPase

NC_014010
(Candidatus Puniceispirillum marinum IMCC1322)

3e-66

1146) fliI
( YP_007702207.1 )

flagellum-specific ATP synthase

NC_020909
(Octadecabacter arcticus 238)

3e-66

1147) YE105_C3290
( YP_004299487.1 )

FliI/YscN family ATPase

NC_015224
(Yersinia enterocolitica 105.5R(r))

3e-66

1148) fliI
( YP_071836.1 )

flagellum-specific ATP synthase

NC_006155
(Yersinia pseudotuberculosis IP 32953)

3e-66

1149) fliI
( YP_001873891.1 )

flagellum-specific ATP synthase

NC_010634
(Yersinia pseudotuberculosis PB1/+)

3e-66

1150) fliI
( YP_001719468.1 )

flagellum-specific ATP synthase

NC_010465
(Yersinia pseudotuberculosis YPIII)

3e-66

1151) Celf_0674
( YP_004452201.1 )

FliI/YscN family ATPase

NC_015514
(Cellulomonas fimi ATCC 484)

4e-66

1152) fliI
( NP_773525.2 )

flagellum-specific ATP synthase

NC_004463
(Bradyrhizobium japonicum USDA 110)

4e-66

1153) Zymop_0590
( YP_004661782.1 )

ATPase, FliI/YscN family

NC_015709
(Zymomonas mobilis ATCC 29192)

4e-66

1154) invC
( YP_002924273.1 )

ATP synthase SpaL

NC_012751
(Candidatus Hamiltonella defensa T5A)

4e-66

1155) Pat9b_2392
( YP_004116250.1 )

flagellar protein export ATPase FliI

NC_014837
(Pantoea sp. At-9b)

6e-66

1156) Plabr_2460
( YP_004270083.1 )

type III secretion system ATPase, FliI/YscN

NC_015174
(Planctomyces brasiliensis DSM 5305)

1e-65

1157) Tcr_1439
( YP_391705.1 )

ATPase FliI/YscN

NC_007520
(Thiomicrospira crunogena XCL-2)

1e-65

1158) fliI
( YP_002419630.1 )

flagellum-specific ATP synthase

NC_011757
(Methylobacterium chloromethanicum CM4)

7e-66

1159) fliI
( YP_001161885.1 )

flagellum-specific ATP synthase

NC_009381
(Yersinia pestis Pestoides F)

8e-66

1160) fliI
( YP_002753384.1 )

flagellar protein export ATPase FliI

NC_012483
(Acidobacterium capsulatum ATCC 51196)

2e-65

1161) C380_20795
( YP_006856489.1 )

flagellar protein export ATPase FliI

NC_018708
(Acidovorax sp. KKS102)

2e-65

1162) fliI
( YP_002961796.1 )

flagellum-specific ATP synthase

NC_012808
(Methylobacterium extorquens AM1)

2e-65

1163) fliI
( YP_003066601.1 )

flagellum-specific ATP synthase

NC_012988
(Methylobacterium extorquens DM4)

2e-65

1164) fliI
( YP_001638299.1 )

flagellum-specific ATP synthase

NC_010172
(Methylobacterium extorquens PA1)

2e-65

1165) Daci_0641
( YP_001561672.1 )

flagellar protein export ATPase FliI

NC_010002
(Delftia acidovorans SPH-1)

3e-65

1166) DelCs14_0579
( YP_004485973.1 )

flagellar protein export ATPase FliI

NC_015563
(Delftia sp. Cs1-4)

3e-65

1167) fliI
( YP_005448716.1 )

flagellar protein export ATPase

NC_017082
(Bradyrhizobium sp. S23321)

3e-65

1168) fliI
( YP_003468595.1 )

flagellum-specific ATP synthase

NC_013892
(Xenorhabdus bovienii SS-2004)

3e-65

1169) fliI
( NP_777702.1 )

flagellum-specific ATP synthase

NC_004545
(Buchnera aphidicola Bp (Baizongia pistaciae))

4e-65

1170) MU9_32
( YP_007503451.1 )

Flagellum-specific ATP synthase FliI

NC_020418
(Morganella morganii KT)

4e-65

1171) fliI
( YP_001760002.1 )

flagellum-specific ATP synthase

NC_010506
(Shewanella woodyi ATCC 51908)

5e-65

1172) fliI
( YP_001758202.1 )

flagellum-specific ATP synthase

NC_010505
(Methylobacterium radiotolerans JCM 2831)

5e-65

1173) CtCNB1_0461
( YP_003276503.1 )

flagellar protein export ATPase FliI

NC_013446
(Comamonas testosteroni CNB-1)

5e-65

1174) Theam_1448
( YP_004152051.1 )

ATPase, FliI/YscN family

NC_014926
(Thermovibrio ammonificans HB-1)

5e-65

1175) Ajs_3804
( YP_987987.1 )

flagellar protein export ATPase FliI

NC_008782
(Acidovorax sp. JS42)

6e-65

1176) fliI
( YP_002894860.1 )

flagellar protein export ATPase FliI

NC_012695
(Burkholderia pseudomallei MSHR346)

6e-65

1177) fliI
( YP_008398270.1 )

flagellum-specific ATP synthase

NC_022000
(Proteus mirabilis BB2000)

7e-65

1178) fliI
( YP_008106941.1 )

ATP synthase

NC_021500
(Enterobacter sp. R4-368)

9e-65

1179) fliI
( YP_562336.1 )

flagellum-specific ATP synthase

NC_007954
(Shewanella denitrificans OS217)

9e-65

1180) Rahaq2_2552
( YP_005200544.1 )

flagellar protein export ATPase FliI

NC_016818
(Rahnella aquatilis CIP 78.65)

9e-65

1181) flaC
( YP_786231.1 )

flagellum-specific ATP synthase

NC_010645
(Bordetella avium 197N)

9e-65

1182) fliI
( YP_005779553.1 )

flagellum-specific ATP synthase

NC_017368
(Helicobacter pylori F16)

9e-65

1183) Alide_3854
( YP_004128449.1 )

flagellar protein export atpase flii

NC_014910
(Alicycliphilus denitrificans BC)

1e-64

1184) Alide2_4200
( YP_004390031.1 )

flagellar protein export ATPase FliI

NC_015422
(Alicycliphilus denitrificans K601)

1e-64

1185) fliI
( YP_004302684.1 )

H+-transporting two-sector ATPase FliI

NC_015259
(Polymorphum gilvum SL003B-26A1)

1e-64

1186) fliI
( YP_002151364.1 )

flagellum-specific ATP synthase

NC_010554
(Proteus mirabilis HI4320)

1e-64

1187) Dtpsy_3078
( YP_002554511.1 )

ATPase flii/yscn

NC_011992
(Acidovorax ebreus TPSY)

1e-64

1188) fliI
( YP_061695.1 )

flagellum-like ATP synthase

NC_006087
(Leifsonia xyli CTCB07)

1e-64

1189) K750_01365
( YP_007981635.1 )

ATP synthase

NC_021217
(Helicobacter pylori UM037)

1e-64

1190) NH44784_042951
( YP_008031360.1 )

Flagellum-specific ATP synthase FliI

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

2e-64

1191) BN341_p0507
( YP_007044056.1 )

Flagellum-specific ATP synthase FliI

NC_019674
(Helicobacter heilmannii ASB1.4)

2e-64

1192) A11S_662
( YP_007642106.1 )

Flagellum-specific ATP synthase FliI

NC_020812
(Micavibrio aeruginosavorus EPB)

2e-64

1193) fliI
( YP_005769179.1 )

H(+)-transporting two-sector ATPase

NC_017360
(Helicobacter pylori 35A)

2e-64

1194) fliI
( YP_004865087.1 )

flagellar protein export ATPase FliI

NC_016026
(Micavibrio aeruginosavorus ARL-13)

2e-64

1195) fliI
( YP_003978810.1 )

flagellar protein export ATPase FliI

NC_014640
(Achromobacter xylosoxidans A8)

3e-64

1196) fliI
( YP_425617.1 )

flagellum-specific ATP synthase

NC_007643
(Rhodospirillum rubrum ATCC 11170)

3e-64

1197) fliI
( YP_006046807.1 )

flagellum-specific ATP synthase

NC_017584
(Rhodospirillum rubrum F11)

3e-64

1198) Terro_1830
( YP_006421457.1 )

type III secretion system ATPase, FliI/YscN

NC_018014
(Terriglobus roseus DSM 18391)

3e-64

1199) fliI
( YP_005778049.1 )

flagellum-specific ATP synthase

NC_017367
(Helicobacter pylori F57)

3e-64

1200) fliI
( YP_006220053.1 )

flagellum-specific ATP synthase

NC_017733
(Helicobacter pylori HUP-B14)

3e-64

1201) fliI
( YP_004678126.1 )

flagellum-specific ATP synthase

NC_015717
(Hyphomicrobium sp. MC1)

4e-64

1202) fliI
( YP_530969.1 )

flagellum-specific ATP synthase

NC_007925
(Rhodopseudomonas palustris BisB18)

4e-64

1203) fliI
( YP_006896319.1 )

flagellum-specific ATP synthase FliI

NC_018828
(Bordetella parapertussis Bpp5)

6e-64

1204) fliI2
( YP_005041130.1 )

flagellum-specific ATP synthase

NC_016624
(Azospirillum lipoferum 4B)

6e-64

1205) Acav_4289
( YP_004236740.1 )

flagellar protein export ATPase FliI

NC_015138
(Acidovorax avenae ATCC 19860)

7e-64

1206) lfiI
( YP_005436805.1 )

flagellum-specific ATP synthase LfiI

NC_017075
(Rubrivivax gelatinosus IL144)

7e-64

1207) fliI
( YP_780078.1 )

flagellum-specific ATP synthase

NC_008435
(Rhodopseudomonas palustris BisA53)

7e-64

1208) fliI
( YP_005425548.1 )

flagellum-specific ATP synthase

NC_017063
(Helicobacter pylori ELS37)

7e-64

1209) fliI
( YP_005793649.1 )

flagellar export protein ATP synthase

NC_017382
(Helicobacter pylori 51)

7e-64

1210) fliI
( YP_003375888.1 )

flagellum-specific ATP synthase

NC_013722
(Xanthomonas albilineans GPE PC73)

8e-64

1211) fliI
( YP_006966486.1 )

flagellum-specific ATP synthase FliI

NC_019382
(Bordetella bronchiseptica 253)

8e-64

1212) fliI
( YP_006900772.1 )

flagellum-specific ATP synthase FliI

NC_018829
(Bordetella bronchiseptica MO149)

8e-64

1213) fliI
( NP_889122.1 )

flagellum-specific ATP synthase FliI

NC_002927
(Bordetella bronchiseptica RB50)

8e-64

1214) fliI
( NP_883798.1 )

flagellum-specific ATP synthase FliI

NC_002928
(Bordetella parapertussis 12822)

8e-64

1215) fliI
( YP_006625742.1 )

flagellum-specific ATP synthase FliI

NC_018518
(Bordetella pertussis 18323)

8e-64

1216) fliI
( YP_005589542.1 )

flagellum-specific ATP synthase FliI

NC_017223
(Bordetella pertussis CS)

8e-64

1217) fliI
( NP_880143.1 )

flagellum-specific ATP synthase FliI

NC_002929
(Bordetella pertussis Tohama I)

8e-64

1218) fliI
( YP_005776531.1 )

flagellum-specific ATP synthase

NC_017366
(Helicobacter pylori F32)

8e-64

1219) A464_2120
( YP_008322715.1 )

Flagellum-specific ATP synthase FliI

NC_021870
(Salmonella bongori N268-08)

1e-63

1220) fliI
( YP_004730653.1 )

flagellum-specific ATP synthase

NC_015761
(Salmonella bongori NCTC 12419)

1e-63

1221) fliI
( YP_003060598.1 )

flagellum-specific ATP synthase

NC_012982
(Hirschia baltica ATCC 59814)

1e-63

1222) fliI
( YP_001923369.1 )

flagellum-specific ATP synthase

NC_010725
(Methylobacterium populi BJ001)

1e-63

1223) fliI
( YP_001570018.1 )

flagellum-specific ATP synthase

NC_010067
(Salmonella enterica RSK2980)

1e-63

1224) fliI
( YP_001630753.1 )

flagellar biosynthesis ATPase FliI

NC_010170
(Bordetella petrii DSM 12804)

1e-63

1225) fliI
( YP_005784373.1 )

Flagellum-specific ATP synthase

NC_017374
(Helicobacter pylori 2017)

1e-63

1226) fliI
( YP_005792220.1 )

Flagellum-specific ATP synthase

NC_017381
(Helicobacter pylori 2018)

1e-63

1227) fliI
( YP_005762776.1 )

flagellum-specific ATP synthase

NC_017354
(Helicobacter pylori 52)

1e-63

1228) fliI
( YP_005765899.1 )

Flagellum-specific ATP synthase

NC_017357
(Helicobacter pylori 908)

1e-63

1229) fliI
( YP_007017879.1 )

flagellum-specific ATP synthase

NC_019560
(Helicobacter pylori Aklavik117)

1e-63

1230) fliI
( YP_005781108.1 )

flagellum-specific ATP synthase

NC_017371
(Helicobacter pylori Gambia94/24)

1e-63

1231) fliI
( NP_224033.1 )

flagellum-specific ATP synthase

NC_000921
(Helicobacter pylori J99)

1e-63

1232) fliI
( YP_005768969.1 )

flagellum-specific ATP synthase

NC_017359
(Helicobacter pylori Sat464)

1e-63

1233) Shal_4242
( YP_001676441.1 )

FliI/YscN family ATPase

NC_010334
(Shewanella halifaxensis HAW-EB4)

1e-63

1234) K747_04095
( YP_007979023.1 )

ATP synthase

NC_021215
(Helicobacter pylori UM032)

1e-63

1235) K748_05265
( YP_008336941.1 )

ATP synthase

NC_021882
(Helicobacter pylori UM298)

1e-63

1236) K749_06855
( YP_007981127.1 )

ATP synthase

NC_021216
(Helicobacter pylori UM299)

1e-63

1237) Sulac_3154
( YP_005258272.1 )

type III secretion system ATPase, FliI/YscN

NC_016884
(Sulfobacillus acidophilus DSM 10332)

1e-63

1238) fliI
( YP_004720301.1 )

type III secretion system ATPase, FliI/YscN

NC_015757
(Sulfobacillus acidophilus TPY)

1e-63

1239) fliI
( YP_007705142.1 )

flagellum-specific ATP synthase

NC_020911
(Octadecabacter antarcticus 307)

1e-63

1240) fliI
( YP_003058040.1 )

flagellum-specific ATP synthase

NC_012973
(Helicobacter pylori B38)

9e-64

1241) fliI
( YP_005790613.1 )

flagellum-specific ATP synthase

NC_017379
(Helicobacter pylori Puno135)

9e-64

1242) fliI
( YP_928169.1 )

flagellum-specific ATP synthase

NC_008700
(Shewanella amazonensis SB2B)

2e-63

1243) AnaeK_2267
( YP_002134623.1 )

FliI/YscN family ATPase

NC_011145
(Anaeromyxobacter sp. K)

2e-63

1244) fliI
( YP_008266175.1 )

ATP synthase

NC_021820
(Salmonella enterica 08-1736)

2e-63

1245) fliI
( YP_005237942.1 )

flagellum-specific ATP synthase

NC_016856
(Salmonella enterica 14028S)

2e-63

1246) fliI
( YP_002226135.1 )

flagellum-specific ATP synthase

NC_011274
(Salmonella enterica 287/91)

2e-63

1247) SBOV20321
( YP_008505875.1 )

flagellar protein export ATPase FliI

NC_022241
(Salmonella enterica 3114)

2e-63

1248) fliI
( YP_008247880.1 )

flagellum-specific ATP synthase

NC_021810
(Salmonella enterica 41578)

2e-63

1249) fliI
( YP_005397334.1 )

flagellum-specific ATP synthase

NC_017046
(Salmonella enterica 798)

2e-63

1250) SU5_02575
( YP_006088199.1 )

Flagellum-specific ATP synthase FliI

NC_017623
(Salmonella enterica B182)

2e-63

1251) fliI
( YP_008481480.1 )

flagellum-specific ATP synthase

NC_022221
(Salmonella enterica CDC1983-67)

2e-63

1252) fliI
( YP_008308249.1 )

ATP synthase

NC_021844
(Salmonella enterica CFSAN000189)

2e-63

1253) fliI
( YP_008254824.1 )

ATP synthase

NC_021814
(Salmonella enterica CFSAN001921)

2e-63

1254) fliI
( YP_007470082.1 )

flagellum-specific ATP synthase

NC_020307
(Salmonella enterica CFSAN001992)

2e-63

1255) fliI
( YP_008261237.1 )

ATP synthase

NC_021818
(Salmonella enterica CFSAN002050)

2e-63

1256) fliI
( YP_008253128.1 )

ATP synthase

NC_021812
(Salmonella enterica CFSAN002069)

2e-63

1257) STY2180
( NP_456533.1 )

flagellum-specific ATP synthase

NC_003198
(Salmonella enterica CT18)

2e-63

1258) fliI
( YP_002215114.1 )

flagellum-specific ATP synthase

NC_011205
(Salmonella enterica CT_02021853)

2e-63

1259) fliI
( YP_002115006.1 )

flagellum-specific ATP synthase

NC_011094
(Salmonella enterica CVM19633)

2e-63

1260) STMMW_19521
( YP_005232991.1 )

flagellum-specific ATP synthase

NC_016854
(Salmonella enterica D23580)

2e-63

1261) fliI
( NP_460925.1 )

flagellum-specific ATP synthase

NC_003197
(Salmonella enterica LT2)

2e-63

1262) STBHUCCB_9730
( YP_005216549.1 )

Flagellar protein export ATPase FliI

NC_016832
(Salmonella enterica P-stx-12)

2e-63

1263) fliI
( YP_002243166.1 )

flagellum-specific ATP synthase

NC_011294
(Salmonella enterica P125109)

2e-63

1264) fliI
( YP_002637327.1 )

flagellum-specific ATP synthase

NC_012125
(Salmonella enterica RKS4594)

2e-63

1265) fliI
( YP_005213022.1 )

flagellum-specific ATP synthase

NC_016831
(Salmonella enterica RKS5078)

2e-63

1266) fliI
( YP_008381162.1 )

ATP synthase

NC_021984
(Salmonella enterica S06004)

2e-63

1267) fliI
( YP_216964.1 )

flagellum-specific ATP synthase

NC_006905
(Salmonella enterica SC-B67)

2e-63

1268) fliI
( YP_001587424.1 )

flagellum-specific ATP synthase

NC_010102
(Salmonella enterica SGSC4150; SPB7)

2e-63

1269) fliI
( YP_005181795.1 )

flagellum-specific ATP synthase

NC_016810
(Salmonella enterica SL1344)

2e-63

1270) fliI
( YP_002041237.1 )

flagellum-specific ATP synthase

NC_011080
(Salmonella enterica SL254)

2e-63

1271) fliI
( YP_002046023.1 )

flagellum-specific ATP synthase

NC_011083
(Salmonella enterica SL476)

2e-63

1272) fliI
( YP_002146051.1 )

flagellum-specific ATP synthase

NC_011149
(Salmonella enterica SL483)

2e-63

1273) fliI
( YP_005242880.1 )

flagellum-specific ATP synthase

NC_016857
(Salmonella enterica ST4/74)

2e-63

1274) fliI
( YP_005247689.1 )

flagellum-specific ATP synthase

NC_016860
(Salmonella enterica T000240)

2e-63

1275) fliI
( NP_804734.1 )

flagellum-specific ATP synthase

NC_004631
(Salmonella enterica Ty2)

2e-63

1276) fliI
( YP_007925251.1 )

flagellum-specific ATP synthase

NC_021176
(Salmonella enterica Ty21a)

2e-63

1277) fliI
( YP_007902349.1 )

flagellum-specific ATP synthase

NC_021151
(Salmonella enterica U288)

2e-63

1278) fliI
( YP_005252478.1 )

flagellum-specific ATP synthase

NC_016863
(Salmonella enterica UK-1)

2e-63

1279) SN31241_30710
( YP_008360987.1 )

ATPase FliI/YscN

NC_021902
(Salmonella enterica USMARC-S3124.1)

2e-63

1280) fliI
( YP_003452999.1 )

flagellum-specific ATP synthase

NC_013859
(Azospirillum sp. B510)

2e-63

1281) fliI
( YP_008107650.1 )

ATP synthase

NC_021500
(Enterobacter sp. R4-368)

2e-63

1282) fliI
( NP_208211.1 )

flagellum-specific ATP synthase

NC_000915
(Helicobacter pylori 26695)

2e-63

1283) fliI
( YP_006935343.1 )

flagellum-specific ATP synthase

NC_018939
(Helicobacter pylori 26695)

2e-63

1284) fliI
( YP_007019355.1 )

flagellum-specific ATP synthase

NC_019563
(Helicobacter pylori Aklavik86)

2e-63

1285) fliI
( YP_005782876.1 )

flagellum-specific ATP synthase

NC_017372
(Helicobacter pylori India7)

2e-63

1286) fliI
( YP_005773509.1 )

flagellum-specific ATP synthase

NC_017362
(Helicobacter pylori Lithuania75)

2e-63

1287) fliI
( YP_005789016.1 )

flagellum-specific ATP synthase

NC_017378
(Helicobacter pylori Puno120)

2e-63

1288) fliI
( YP_006893909.1 )

flagellum-specific ATP synthase

NC_018937
(Helicobacter pylori Rif1)

2e-63

1289) fliI
( YP_006936950.1 )

flagellum-specific ATP synthase

NC_018938
(Helicobacter pylori Rif2)

2e-63

1290) fliI
( YP_006228112.1 )

flagellum-specific ATP synthase

NC_017741
(Helicobacter pylori Shi112)

2e-63

1291) fliI
( YP_006224989.1 )

flagellum-specific ATP synthase

NC_017739
(Helicobacter pylori Shi417)

2e-63

1292) fliI
( YP_002266956.1 )

flagellum-specific ATP synthase

NC_011333
(Helicobacter pylori G27)

2e-63

1293) fliI
( YP_005787505.1 )

flagellum-specific ATP synthase

NC_017376
(Helicobacter pylori Santal49)

2e-63

1294) Rfer_0553
( YP_521835.1 )

ATPase FliI/YscN

NC_007908
(Rhodoferax ferrireducens T118)

3e-63

1295) RSPPHO_00109
( YP_005415705.1 )

ATPase FliI/YscN

NC_017059
(Rhodospirillum photometricum DSM 122)

3e-63

1296) HBZC1_06550
( YP_004607353.1 )

flagellum-specific ATP synthase FliI

NC_015674
(Helicobacter bizzozeronii CIII-1)

2e-63

1297) fliI
( YP_628087.1 )

flagellum-specific ATP synthase

NC_008086
(Helicobacter pylori HPAG1)

3e-63

1298) fliI
( YP_868985.1 )

flagellum-specific ATP synthase

NC_008577
(Shewanella sp. ANA-3)

4e-63

1299) fliI
( YP_733421.1 )

flagellum-specific ATP synthase

NC_008321
(Shewanella sp. MR-4)

4e-63

1300) fliI
( YP_737408.1 )

flagellum-specific ATP synthase

NC_008322
(Shewanella sp. MR-7)

4e-63

1301) Entcl_1808
( YP_003941348.1 )

FliI/YscN family ATPase

NC_014618
(Enterobacter cloacae SCF1)

4e-63

1302) fliI
( NP_842096.1 )

flagellar ATP synthase

NC_004757
(Nitrosomonas europaea ATCC 19718)

4e-63

1303) fliI
( YP_002141678.1 )

flagellum-specific ATP synthase

NC_011147
(Salmonella enterica AKU12601)

5e-63

1304) fliI
( YP_150190.1 )

flagellum-specific ATP synthase

NC_006511
(Salmonella enterica ATCC 9150)

5e-63

1305) fliI
( YP_001452584.1 )

flagellum-specific ATP synthase

NC_009792
(Citrobacter koseri ATCC BAA-895)

5e-63

1306) Zmob_1156
( YP_005621437.1 )

FliI/YscN family ATPase

NC_017262
(Zymomonas mobilis ATCC 10988)

1e-62

1307) ZMO0637
( YP_162372.2 )

ATPase, FliI/YscN family

NC_006526
(Zymomonas mobilis ZM4)

1e-62

1308) Tbd_1091
( YP_314849.1 )

flagella ATPase FliI

NC_007404
(Thiobacillus denitrificans ATCC 25259)

7e-63

1309) Za10_0626
( YP_003225758.1 )

FliI/YscN family ATPase

NC_013355
(Zymomonas mobilis NCIMB 11163)

8e-63

1310) spaL
( YP_005207201.1 )

protein SpaL

NC_016830
(Pseudomonas fluorescens F113)

2e-62

1311) invC
( YP_007030629.1 )

secretory apparatus ATP synthase

NC_019670
(Pseudomonas sp. UW4)

2e-62

1312) Psefu_3037
( YP_004475095.1 )

FliI/YscN family ATPase

NC_015556
(Pseudomonas fulva 12-X)

2e-62

1313) fliI
( YP_003711933.1 )

flagellum-specific ATP synthase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

3e-62

1314) Msip34_0759
( YP_003050534.1 )

FliI/YscN family ATPase

NC_012969
(Methylovorus glucosetrophus SIP3-4)

3e-62

1315) fliI
( YP_004039204.1 )

FliI/YscN family ATPase

NC_014733
(Methylovorus sp. MP688)

3e-62

1316) Neut_0742
( YP_746977.1 )

flagellar protein export ATPase FliI

NC_008344
(Nitrosomonas eutropha C91)

3e-62

1317) fliI
( YP_005607379.1 )

flagellum-specific ATP synthase

NC_017249
(Bradyrhizobium japonicum USDA 6)

3e-62

1318) fliI
( YP_004985602.1 )

flagellum-specific ATP synthase

NC_016594
(Azospirillum brasilense Sp245)

3e-62

1319) fliI
( NP_421834.1 )

flagellum-specific ATP synthase

NC_002696
(Caulobacter crescentus CB15)

4e-62

1320) fliI
( YP_002518508.1 )

flagellum-specific ATP synthase

NC_011916
(Caulobacter crescentus NA1000)

4e-62

1321) fliI
( YP_680664.1 )

flagellum-specific ATP synthase

NC_008209
(Roseobacter denitrificans OCh 114)

5e-62

1322) Veis_1116
( YP_995908.1 )

flagellar protein export ATPase FliI

NC_008786
(Verminephrobacter eiseniae EF01-2)

7e-62

1323) Hhal_0495
( YP_001002084.1 )

flagellar protein export ATPase FliI

NC_008789
(Halorhodospira halophila SL1)

1e-61

1324) fliI1
( NP_902804.1 )

flagellum-specific ATP synthase

NC_005085
(Chromobacterium violaceum ATCC 12472)

1e-61

1325) Cseg_3529
( YP_003594576.1 )

FliI/YscN family ATPase

NC_014100
(Caulobacter segnis ATCC 21756)

2e-61

1326) fliI1
( YP_004975394.1 )

flagellum-specific ATP synthase

NC_016587
(Azospirillum lipoferum 4B)

2e-61

1327) fliI
( YP_003452666.1 )

flagellum-specific ATP synthase

NC_013858
(Azospirillum sp. B510)

2e-61

1328) fliI
( YP_004986934.1 )

flagellum-specific ATP synthase

NC_016596
(Azospirillum brasilense Sp245)

3e-61

1329) Adeh_1596
( YP_464806.1 )

ATPase FliI/YscN

NC_007760
(Anaeromyxobacter dehalogenans 2CP-C)

4e-61

1330) xsaS
( YP_003375990.1 )

xanthomonas secretion apparatus protein

NC_013722
(Xanthomonas albilineans GPE PC73)

4e-61

1331) fliI
( YP_201243.1 )

flagellar protein

NC_006834
(Xanthomonas oryzae KACC10331)

6e-61

1332) XOO_2463
( YP_451492.1 )

flagellar protein

NC_007705
(Xanthomonas oryzae MAFF 311018)

6e-61

1333) PXO_00978
( YP_001913716.1 )

flagellum-specific ATP synthase

NC_010717
(Xanthomonas oryzae PXO99A)

6e-61

1334) PXO_06188
( YP_001913908.1 )

flagellum-specific ATP synthase

NC_010717
(Xanthomonas oryzae PXO99A)

6e-61

1335) fliI
( YP_003664049.1 )

flagellum-specific ATP synthase

NC_014171
(Bacillus thuringiensis BMB171)

6e-61

1336) Psesu_1494
( YP_004146572.1 )

ATPase, FliI/YscN family

NC_014924
(Pseudoxanthomonas suwonensis 11-1)

7e-61

1337) MDS_4744
( YP_004382527.1 )

FliI/YscN family ATPase

NC_015410
(Pseudomonas mendocina NK-01)

8e-61

1338) fliI
( YP_001534580.1 )

flagellum-specific ATP synthase

NC_009952
(Dinoroseobacter shibae DFL 12)

1e-60

1339) fliI
( YP_006564609.1 )

flagellum-specific ATP synthase FliI

NC_018286
(Phaeobacter gallaeciensis 2.10)

1e-60

1340) fliI
( YP_006574938.1 )

flagellum-specific ATP synthase FliI

NC_018290
(Phaeobacter gallaeciensis DSM 17395)

1e-60

1341) Anae109_2216
( YP_001379402.1 )

FliI/YscN family ATPase

NC_009675
(Anaeromyxobacter sp. Fw109-5)

2e-60

1342) Pmen_4414
( YP_001189893.1 )

FliI/YscN family ATPase

NC_009439
(Pseudomonas mendocina ymp)

3e-60

1343) fliI
( YP_002419542.1 )

flagellum-specific ATP synthase

NC_011757
(Methylobacterium chloromethanicum CM4)

3e-60

1344) fliI
( YP_002961725.1 )

flagellum-specific ATP synthase

NC_012808
(Methylobacterium extorquens AM1)

3e-60

1345) fliI
( YP_001638165.1 )

flagellum-specific ATP synthase

NC_010172
(Methylobacterium extorquens PA1)

3e-60

1346) fliI
( YP_003066362.1 )

flagellum-specific ATP synthase

NC_012988
(Methylobacterium extorquens DM4)

4e-60

1347) Jann_4199
( YP_512141.1 )

ATPase FliI/YscN

NC_007802
(Jannaschia sp. CCS1)

1e-59

1348) fliI
( YP_002498833.1 )

flagellum-specific ATP synthase

NC_011894
(Methylobacterium nodulans ORS 2060)

7e-60

1349) fliI
( YP_005187639.1 )

flagellum-specific ATP synthase FliI

NC_016812
(Sinorhizobium fredii HH103)

7e-60

1350) fliI
( YP_006395659.1 )

flagellum-specific ATP synthase FliI

NC_018000
(Sinorhizobium fredii USDA 257)

7e-60

1351) Swit_1290
( YP_001261793.1 )

FliI/YscN family ATPase

NC_009511
(Sphingomonas wittichii RW1)

8e-60

1352) fliI
( YP_002824823.1 )

flagellum-specific ATP synthase

NC_012587
(Sinorhizobium fredii NGR234)

3e-59

1353) fliI
( YP_002361967.1 )

flagellum-specific ATP synthase

NC_011666
(Methylocella silvestris BL2)

4e-59

1354) fliI
( YP_165453.1 )

H+-transporting two-sector ATPase, flagellum-specific

NC_003911
(Ruegeria pomeroyi DSS-3)

4e-59

1355) XC_2263
( YP_243338.1 )

flagellar protein

NC_007086
(Xanthomonas campestris 8004)

7e-59

1356) fliI
( NP_637288.1 )

flagellar protein

NC_003902
(Xanthomonas campestris ATCC 33913)

7e-59

1357) XCR_2191
( YP_005637194.1 )

flagellum-specific ATP synthase

NC_017271
(Xanthomonas campestris 756C)

8e-59

1358) xccb100_2220
( YP_001903624.1 )

flagellum-specific ATP synthase

NC_010688
(Xanthomonas campestris B100)

8e-59

1359) Fbal_2322
( YP_003913599.1 )

flagellar protein export ATPase FliI

NC_014541
(Ferrimonas balearica DSM 9799)

1e-58

1360) fliI
( NP_642277.1 )

flagellar protein

NC_003919
(Xanthomonas axonopodis 306)

1e-58

1361) fliI
( YP_004851543.1 )

flagellar biosynthesis/type III secretory pathway ATPase FliI

NC_016010
(Xanthomonas axonopodis F1)

1e-58

1362) XAC29_09870
( YP_007636402.1 )

flagellar protein

NC_020800
(Xanthomonas axonopodis Xac29-1)

1e-58

1363) fliI
( YP_363726.1 )

flagellar biosynthesis/type III secretory pathway ATPase FliI

NC_007508
(Xanthomonas campestris 85-10)

1e-58

1364) fliI
( YP_007649867.1 )

Flagellar assembly protein FliL

NC_020815
(Xanthomonas citri Aw12879)

1e-58

1365) fliI
( YP_005446227.1 )

flagellum-specific ATP synthase FliI

NC_017080
(Phycisphaera mikurensis NBRC 102666)

2e-58

1366) XOC_2349
( YP_005628651.1 )

flagellum-specific ATP synthase

NC_017267
(Xanthomonas oryzae BLS256)

2e-58

1367) ZZ6_0639
( YP_006518058.1 )

FliI/YscN family ATPase

NC_018145
(Zymomonas mobilis ATCC 29191)

3e-58

1368) A2cp1_2355
( YP_002492759.1 )

FliI/YscN family ATPase

NC_011891
(Anaeromyxobacter dehalogenans 2CP-1)

5e-58

1369) Rvan_2563
( YP_004012877.1 )

FliI/YscN family ATPase

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

7e-58

1370) fliI
( YP_007332614.1 )

flagellar protein export ATPase FliI

NC_020059
(Rhizobium tropici CIAT 899)

1e-57

1371) fliI
( YP_001833869.1 )

flagellum-specific ATP synthase

NC_010581
(Beijerinckia indica ATCC 9039)

1e-57

1372) fliI
( YP_672869.1 )

flagellum-specific ATP synthase

NC_008254
(Chelativorans sp. BNC1)

2e-57

1373) fliI
( YP_002467840.1 )

flagellum-specific ATP synthase

NC_011833
(Buchnera aphidicola 5A)

2e-57

1374) fliI
( NP_239910.1 )

flagellum-specific ATP synthase

NC_002528
(Buchnera aphidicola APS)

2e-57

1375) CWU_00450
( YP_005618201.1 )

flagellum-specific ATP synthase

NC_017254
(Buchnera aphidicola JF98)

2e-57

1376) CWS_00360
( YP_005617626.1 )

flagellum-specific ATP synthase

NC_017253
(Buchnera aphidicola JF99)

2e-57

1377) CWO_00350
( YP_005618692.1 )

flagellum-specific ATP synthase

NC_017255
(Buchnera aphidicola LL01)

2e-57

1378) CWQ_00380
( YP_005617047.1 )

flagellum-specific ATP synthase

NC_017252
(Buchnera aphidicola TLW03)

2e-57

1379) fliI
( YP_002468395.1 )

flagellum-specific ATP synthase

NC_011834
(Buchnera aphidicola Tuc7)

2e-57

1380) TM1040_2966
( YP_614960.1 )

ATP synthase FliI/YscN

NC_008044
(Ruegeria sp. TM1040)

2e-57

1381) fliI
( YP_005619269.1 )

flagellum-specific ATP synthase

NC_017256
(Buchnera aphidicola Ak)

9e-58

1382) fliI
( YP_007599100.1 )

flagellum-specific ATP synthase

NC_020549
(Candidatus Liberibacter asiaticus gxpsy)

2e-57

1383) fliI
( YP_003065097.1 )

flagellum-specific ATP synthase

NC_012985
(Candidatus Liberibacter asiaticus psy62)

2e-57

1384) B488_01870
( YP_007232435.1 )

Flagellum-specific ATP synthase FliI

NC_019907
(Liberibacter crescens BT-1)

6e-57

1385) fliI
( YP_003579652.1 )

flagellar protein export ATPase FliI

NC_014034
(Rhodobacter capsulatus SB 1003)

1e-56

1386) PSE_2592
( YP_005081122.1 )

flagellar protein export ATPase FliI

NC_016642
(Pseudovibrio sp. FO-BEG1)

6e-57

1387) A363_00771
( YP_007732466.1 )

type III secretion system ATPase

NC_020966
(Chlamydia trachomatis A/363)

7e-57

1388) A5291_00770
( YP_007724277.1 )

type III secretion system ATPase

NC_020939
(Chlamydia trachomatis A/5291)

7e-57

1389) A7249_00769
( YP_007728749.1 )

type III secretion system ATPase

NC_020944
(Chlamydia trachomatis A/7249)

7e-57

1390) fliI
( YP_328543.1 )

type III secretion system ATPase

NC_007429
(Chlamydia trachomatis A/HAR-13)

7e-57

1391) fliI
( YP_005156553.1 )

flagellum-specific ATP synthase

NC_016798
(Chlamydia trachomatis A2497)

7e-57

1392) CTO_0779
( YP_005813604.1 )

Flagellum-specific ATP synthase

NC_017437
(Chlamydia trachomatis A2497)

7e-57

1393) fliI
( YP_002889222.1 )

type III secretion system ATPase

NC_012687
(Chlamydia trachomatis B/TZ1A828/OT)

7e-57

1394) fliI
( YP_005811771.1 )

Flagellum-specific ATP synthase

NC_017434
(Chlamydia trachomatis D-EC)

7e-57

1395) fliI
( YP_005812649.1 )

Flagellum-specific ATP synthase

NC_017436
(Chlamydia trachomatis D-LC)

7e-57

1396) O177_03965
( YP_008442870.1 )

type III secretion system ATPase

NC_022109
(Chlamydia trachomatis D/14-96)

7e-57

1397) SOTOND5_00762
( YP_007727851.1 )

type III secretion system ATPase

NC_020943
(Chlamydia trachomatis D/SotonD5)

7e-57

1398) SOTOND6_00762
( YP_007734251.1 )

type III secretion system ATPase

NC_020968
(Chlamydia trachomatis D/SotonD6)

7e-57

1399) fliI
( NP_220236.1 )

type III secretion system ATPase

NC_000117
(Chlamydia trachomatis D/UW-3/CX)

7e-57

1400) G11074_03790
( YP_005815465.1 )

type III secretion system ATPase

NC_017440
(Chlamydia trachomatis G/11074)

7e-57

1401) G11222_03815
( YP_005809024.1 )

type III secretion system ATPase

NC_017430
(Chlamydia trachomatis G/11222)

7e-57

1402) CTG9301_03805
( YP_005810874.1 )

type III secretion system ATPase

NC_017432
(Chlamydia trachomatis G/9301)

7e-57

1403) G9768_03795
( YP_005808099.1 )

type III secretion system ATPase

NC_017429
(Chlamydia trachomatis G/9768)

7e-57

1404) SOTONG1_00763
( YP_007726063.1 )

type III secretion system ATPase

NC_020941
(Chlamydia trachomatis G/SotonG1)

7e-57

1405) SOTONIA1_00765
( YP_007736038.1 )

type III secretion system ATPase

NC_020970
(Chlamydia trachomatis Ia/SotonIa1)

7e-57

1406) SOTONIA3_00765
( YP_007725171.1 )

type III secretion system ATPase

NC_020940
(Chlamydia trachomatis Ia/SotonIa3)

7e-57

1407) O178_03985
( YP_008469097.1 )

type III secretion system ATPase

NC_022120
(Chlamydia trachomatis Ia20-97)

7e-57

1408) O180_03970
( YP_008470021.1 )

type III secretion system ATPase

NC_022121
(Chlamydia trachomatis J/31-98)

7e-57

1409) CTJTET1_03835
( YP_008349451.1 )

type III secretion system ATPase

NC_021892
(Chlamydia trachomatis J/6276tet1)

7e-57

1410) SOTONK1_00762
( YP_007731565.1 )

type III secretion system ATPase

NC_020965
(Chlamydia trachomatis K/SotonK1)

7e-57

1411) CTL2C_31
( YP_004716943.1 )

putative ATP synthase hrpB6

NC_015744
(Chlamydia trachomatis L2c)

7e-57

1412) CTRC122_03840
( YP_008348506.1 )

type III secretion system ATPase

NC_021891
(Chlamydia trachomatis RC-J(s)/122)

7e-57

1413) CTRC953_03780
( YP_008346638.1 )

type III secretion system ATPase

NC_021889
(Chlamydia trachomatis RC-J/953)

7e-57

1414) fliI1
( YP_002796349.1 )

FliI1

NC_012559
(Laribacter hongkongensis HLHK9)

8e-57

1415) fliI
( YP_002888341.1 )

type III secretion system ATPase

NC_012686
(Chlamydia trachomatis Jali20)

2e-56

1416) CTRC852_03875
( YP_008345688.1 )

type III secretion system ATPase

NC_021888
(Chlamydia trachomatis RC-F(s)/852)

2e-56

1417) CTRC69_03820
( YP_008351537.1 )

type III secretion system ATPase

NC_021895
(Chlamydia trachomatis RC-F/69)

2e-56

1418) JCM7686_3087
( YP_008405955.1 )

flagellum-specific ATP synthase

NC_022041
(Paracoccus aminophilus JCM 7686)

3e-56

1419) O176_03975
( YP_008468169.1 )

type III secretion system ATPase

NC_022119
(Chlamydia trachomatis D/13-96)

3e-56

1420) SOTOND1_00764
( YP_007733359.1 )

type III secretion system ATPase

NC_020967
(Chlamydia trachomatis D/SotonD1)

3e-56

1421) E11023_03780
( YP_005809948.1 )

type III secretion system ATPase

NC_017431
(Chlamydia trachomatis E/11023)

3e-56

1422) O175_03980
( YP_008441950.1 )

type III secretion system ATPase

NC_022108
(Chlamydia trachomatis E/12-94)

3e-56

1423) E150_03815
( YP_005814541.1 )

type III secretion system ATPase

NC_017439
(Chlamydia trachomatis E/150)

3e-56

1424) BOUR_00766
( YP_007736933.1 )

type III secretion system ATPase

NC_020971
(Chlamydia trachomatis E/Bour)

3e-56

1425) SOTONE4_00761
( YP_007735141.1 )

type III secretion system ATPase

NC_020969
(Chlamydia trachomatis E/SotonE4)

3e-56

1426) SOTONE8_00768
( YP_007726960.1 )

type III secretion system ATPase

NC_020942
(Chlamydia trachomatis E/SotonE8)

3e-56

1427) fliI
( YP_006361529.1 )

flagellum-specific ATP synthase

NC_017952
(Chlamydia trachomatis E/SW3)

3e-56

1428) O169_03985
( YP_008466310.1 )

type III secretion system ATPase

NC_022117
(Chlamydia trachomatis F/1-93)

3e-56

1429) O173_03975
( YP_008441030.1 )

type III secretion system ATPase

NC_022107
(Chlamydia trachomatis F/11-96)

3e-56

1430) O170_03970
( YP_008440104.1 )

type III secretion system ATPase

NC_022106
(Chlamydia trachomatis F/2-93)

3e-56

1431) O172_03965
( YP_008467237.1 )

type III secretion system ATPase

NC_022118
(Chlamydia trachomatis F/6-94)

3e-56

1432) SOTONF3_00762
( YP_007730673.1 )

type III secretion system ATPase

NC_020964
(Chlamydia trachomatis F/SotonF3)

3e-56

1433) fliI
( YP_006360654.1 )

flagellum-specific ATP synthase

NC_017951
(Chlamydia trachomatis F/SW4)

3e-56

1434) fliI
( YP_006362404.1 )

flagellum-specific ATP synthase

NC_017953
(Chlamydia trachomatis F/SW5)

3e-56

1435) fliI
( YP_007540416.1 )

flagellum-specific ATP synthase

NC_020511
(Chlamydia trachomatis IU824)

3e-56

1436) fliI
( YP_007541293.1 )

flagellum-specific ATP synthase

NC_020512
(Chlamydia trachomatis IU888)

3e-56

1437) O179_03975
( YP_008443785.1 )

type III secretion system ATPase

NC_022110
(Chlamydia trachomatis J/27-97)

3e-56

1438) CTRC342_03855
( YP_008347560.1 )

type III secretion system ATPase

NC_021890
(Chlamydia trachomatis RC-F(s)/342)

3e-56

1439) fliI
( YP_005816352.1 )

flagellum-specific ATP synthase

NC_017441
(Chlamydia trachomatis Sweden2)

3e-56

1440) Rsph17025_1644
( YP_001167842.1 )

FliI/YscN family ATPase

NC_009428
(Rhodobacter sphaeroides ATCC 17025)

5e-56

1441) fliI
( NP_660429.2 )

flagellum-specific ATP synthase

NC_004061
(Buchnera aphidicola Sg)

1e-55

1442) fliI
( YP_004062340.1 )

flagellum-specific ATP synthase

NC_014774
(Candidatus Liberibacter solanacearum CLso-ZC1)

8e-56

1443) fliI
( YP_004848106.1 )

flagellar protein export ATPase FliI

NC_016002
(Pseudogulbenkiania sp. NH8B)

9e-56

1444) fliI
( YP_001754386.1 )

flagellum-specific ATP synthase

NC_010505
(Methylobacterium radiotolerans JCM 2831)

1e-55

1445) Adeh_1391
( YP_464602.1 )

ATPase FliI/YscN

NC_007760
(Anaeromyxobacter dehalogenans 2CP-C)

2e-55

1446) TC_0090
( NP_296474.1 )

virulence ATPase, putative

NC_002620
(Chlamydia muridarum Nigg)

2e-55

1447) fliI
( YP_007915916.1 )

flagellum-specific ATP synthase

NC_021172
(Hyphomicrobium denitrificans 1NES1)

2e-55

1448) Sden_0056
( YP_561076.1 )

ATPase FliI/YscN

NC_007954
(Shewanella denitrificans OS217)

4e-55

1449) fliI
( YP_001654177.1 )

type III secretion system ATPase

NC_010287
(Chlamydia trachomatis 434/Bu)

7e-55

1450) L1115_00758
( YP_007715357.1 )

type III secretion system ATPase

NC_020929
(Chlamydia trachomatis L1/115)

7e-55

1451) L11322_00758
( YP_007737821.1 )

type III secretion system ATPase

NC_020972
(Chlamydia trachomatis L1/1322/p2)

7e-55

1452) L1224_00758
( YP_007738711.1 )

type III secretion system ATPase

NC_020973
(Chlamydia trachomatis L1/224)

7e-55

1453) L1440_00761
( YP_007722486.1 )

type III secretion system ATPase

NC_020937
(Chlamydia trachomatis L1/440/LN)

7e-55

1454) L225667R_00759
( YP_007716247.1 )

type III secretion system ATPase

NC_020930
(Chlamydia trachomatis L2/25667R)

7e-55

1455) CTLFINAL_00455
( YP_007852034.1 )

type III secretion system ATPase

NC_021052
(Chlamydia trachomatis L2/434/Bu(f))

7e-55

1456) CTLINITIAL_00455
( YP_007851094.1 )

type III secretion system ATPase

NC_021050
(Chlamydia trachomatis L2/434/Bu(i))

7e-55

1457) L2B795_00757
( YP_007723374.1 )

type III secretion system ATPase

NC_020938
(Chlamydia trachomatis L2b/795)

7e-55

1458) L2B8200_00757
( YP_007729635.1 )

type III secretion system ATPase

NC_020945
(Chlamydia trachomatis L2b/8200/07)

7e-55

1459) L2BAMS1_00757
( YP_007718917.1 )

type III secretion system ATPase

NC_020933
(Chlamydia trachomatis L2b/Ams1)

7e-55

1460) L2BAMS2_00757
( YP_007719807.1 )

type III secretion system ATPase

NC_020934
(Chlamydia trachomatis L2b/Ams2)

7e-55

1461) L2BAMS3_00757
( YP_007742268.1 )

type III secretion system ATPase

NC_020977
(Chlamydia trachomatis L2b/Ams3)

7e-55

1462) L2BAMS4_00757
( YP_007743158.1 )

type III secretion system ATPase

NC_020978
(Chlamydia trachomatis L2b/Ams4)

7e-55

1463) L2BAMS5_00758
( YP_007721593.1 )

type III secretion system ATPase

NC_020936
(Chlamydia trachomatis L2b/Ams5)

7e-55

1464) L2BCAN1_00759
( YP_007720699.1 )

type III secretion system ATPase

NC_020935
(Chlamydia trachomatis L2b/Canada1)

7e-55

1465) L2BCAN2_00758
( YP_007718026.1 )

type III secretion system ATPase

NC_020932
(Chlamydia trachomatis L2b/Canada2)

7e-55

1466) L2BCV204_00757
( YP_007741378.1 )

type III secretion system ATPase

NC_020976
(Chlamydia trachomatis L2b/CV204)

7e-55

1467) L2BLST_00757
( YP_007740488.1 )

type III secretion system ATPase

NC_020975
(Chlamydia trachomatis L2b/LST)

7e-55

1468) L2BUCH2_00757
( YP_007717135.1 )

type III secretion system ATPase

NC_020931
(Chlamydia trachomatis L2b/UCH-2)

7e-55

1469) L3404_00757
( YP_007739600.1 )

type III secretion system ATPase

NC_020974
(Chlamydia trachomatis L3/404/LN)

7e-55

1470) CTRC943_03785
( YP_008352462.1 )

type III secretion system ATPase

NC_021896
(Chlamydia trachomatis RC-J/943)

7e-55

1471) CTRC966_03790
( YP_008354307.1 )

type III secretion system ATPase

NC_021898
(Chlamydia trachomatis RC-J/966)

7e-55

1472) CTRC971_03795
( YP_008355232.1 )

type III secretion system ATPase

NC_021899
(Chlamydia trachomatis RC-J/971)

7e-55

1473) CTRC3_03825
( YP_008353383.1 )

type III secretion system ATPase

NC_021897
(Chlamydia trachomatis RC-L2(s)/3)

7e-55

1474) CTRC46_03795
( YP_008344762.1 )

type III secretion system ATPase

NC_021887
(Chlamydia trachomatis RC-L2(s)/46)

7e-55

1475) CTRC55_03795
( YP_008350406.1 )

type III secretion system ATPase

NC_021893
(Chlamydia trachomatis RC-L2/55)

7e-55

1476) fliI
( YP_001653189.1 )

type III secretion system ATPase

NC_010280
(Chlamydia trachomatis UCH-1)

7e-55

1477) Sala_2933
( YP_617971.1 )

ATPase FliI/YscN

NC_008048
(Sphingopyxis alaskensis RB2256)

9e-55

1478) Hden_3112
( YP_003757228.1 )

ATPase, FliI/YscN family

NC_014313
(Hyphomicrobium denitrificans ATCC 51888)

6e-54

1479) A2cp1_2562
( YP_002492965.1 )

ATPase FliI/YscN

NC_011891
(Anaeromyxobacter dehalogenans 2CP-1)

2e-53

1480) AnaeK_2466
( YP_002134820.1 )

FliI/YscN family ATPase

NC_011145
(Anaeromyxobacter sp. K)

2e-53

1481) Rsph17025_2599
( YP_001168792.1 )

FliI/YscN family ATPase

NC_009428
(Rhodobacter sphaeroides ATCC 17025)

2e-53

1482) fliI
( YP_002277790.1 )

flagellum-specific ATP synthase

NC_011365
(Gluconacetobacter diazotrophicus PAl 5)

1e-52

1483) fliI
( YP_001523562.1 )

flagellum-specific ATP synthase

NC_009937
(Azorhizobium caulinodans ORS 571)

1e-52

1484) G432_05920
( YP_007615507.1 )

FliI/YscN family ATPase

NC_020561
(Sphingomonas sp. MM-1)

2e-52

1485) fliI
( YP_001601913.1 )

flagellum-specific ATP synthase

NC_010125
(Gluconacetobacter diazotrophicus PAl 5)

9e-52

1486) fliI
( NP_902666.1 )

flagellum-specific ATP synthase

NC_005085
(Chromobacterium violaceum ATCC 12472)

3e-51

1487) fliI
( NP_214096.1 )

flagellar export protein

NC_000918
(Aquifex aeolicus VF5)

4e-51

1488) fliI2
( YP_515022.1 )

type III secretion system ATPase

NC_007899
(Chlamydophila felis Fe/C-56)

8e-51

1489) fliI
( YP_004305574.1 )

H(+)-transporting ATP synthase, flagellum-specific protein

NC_015259
(Polymorphum gilvum SL003B-26A1)

9e-51

1490) AO9_04670
( YP_007438633.1 )

type III secretion system ATPase

NC_020248
(Chlamydia psittaci Mat116)

2e-50

1491) CCA00909
( NP_829770.1 )

type III secretion system ATPase

NC_003361
(Chlamydophila caviae GPIC)

1e-49

1492) fliI
( YP_004833422.1 )

flagellum-specific ATP synthase FliI

NC_015976
(Sphingobium sp. SYK-6)

1e-48

1493) KVU_1929
( YP_005795764.1 )

H+-transporting two-sector ATPase, flagellum-specific

NC_017384
(Ketogulonicigenium vulgare WSH-001)

1e-47

1494) EIO_2401
( YP_003964789.1 )

H+-transporting two-sector ATPase, flagellum-specific

NC_014625
(Ketogulonicigenium vulgare Y25)

1e-47

• Sequence Alignments

1) CFSAN001992_04515 in NC_020307


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  679 bits (2566),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

2) SE451236_12940 in NC_021820


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2564),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

3) SEEB0189_12460 in NC_021844


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2562),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTTGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120
            NGSKALLSPFTST+GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADCNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            AD NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDAYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAID+YPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

4) SNSL254_A1526 in NC_011080


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2564),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

5) SSPA1336 in NC_011147


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2563),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDAYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAID+YPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

6) ssaN in NC_006511


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2563),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDAYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAID+YPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

7) SPAB_01910 in NC_010102


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2564),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

8) ssaN in NC_016856


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2564),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

9) STMMW_14201 in NC_016854


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2564),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

10) ssaN in NC_003197


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2564),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

11) ssaN in NC_016810


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2564),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

12) ssaN in NC_016857


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2564),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

13) STMDT12_C14310 in NC_016860


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2564),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

14) STU288_03395 in NC_021151


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2564),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

15) ssaN in NC_016863


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2564),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

16) CFSAN001921_10070 in NC_021814


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  678 bits (2564),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

17) SeAg_B1758 in NC_011149


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  677 bits (2558),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/433 (99%), Positives = 430/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADCNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            AD NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

18) SEEH1578_16310 in NC_021810


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  677 bits (2559),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 430/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADCNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            AD NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

19) SU5_02031 in NC_017623


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  677 bits (2559),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 430/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADCNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            AD NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

20) CFSAN002069_01925 in NC_021812


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  677 bits (2559),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 430/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADCNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            AD NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

21) SeHA_C1548 in NC_011083


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  677 bits (2559),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 430/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADCNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            AD NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

22) SBOV14121 in NC_022241


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  676 bits (2555),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 428/433 (99%), Positives = 429/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRALPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR LP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADCNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            AD NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

23) SeSA_A1511 in NC_011094


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  676 bits (2555),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/433 (99%), Positives = 430/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVTALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQV ALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

24) CFSAN002050_13470 in NC_021818


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  675 bits (2553),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 427/433 (99%), Positives = 429/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADCNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            AD NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDNDKAIDTYPDICTFLRQNKDEVCGP  420
            EHRQLAAILRR LALYQEVELLIRIGEYQRGVDTD DKAIDTYPDICTFLRQ+KDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

25) SN31241_24850 in NC_021902


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  670 bits (2534),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 425/428 (99%), Positives = 426/428 (99%), Gaps = 0/428 (0%)

Query  1    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKA  60
            MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKA
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKA  65

Query  61   LLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWKDYDAM  120
            LLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWKDYDAM
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM  125

Query  121  PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV  180
            PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV
Sbjct  126  PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV  185

Query  181  LVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGK  240
            LVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGK
Sbjct  186  LVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGK  245

Query  241  RVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYT  300
            RVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYT
Sbjct  246  RVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYT  305

Query  301  VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL  360
            VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL
Sbjct  306  VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL  365

Query  361  AAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIE  420
            AAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIE
Sbjct  366  AAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIE  425

Query  421  KLHQILTE  428
            KLHQILTE
Sbjct  426  KLHQILTE  433

26) ssaN in NC_017046


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  670 bits (2534),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 425/428 (99%), Positives = 426/428 (99%), Gaps = 0/428 (0%)

Query  1    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKA  60
            MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKA
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKA  65

Query  61   LLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWKDYDAM  120
            LLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWKDYDAM
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM  125

Query  121  PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV  180
            PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV
Sbjct  126  PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV  185

Query  181  LVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGK  240
            LVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGK
Sbjct  186  LVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGK  245

Query  241  RVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYT  300
            RVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYT
Sbjct  246  RVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYT  305

Query  301  VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL  360
            VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL
Sbjct  306  VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL  365

Query  361  AAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIE  420
            AAILRR LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIE
Sbjct  366  AAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIE  425

Query  421  KLHQILTE  428
            KLHQILTE
Sbjct  426  KLHQILTE  433

27) ssaN in NC_006905


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  659 bits (2490),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/433 (100%), Positives = 433/433 (100%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120
            NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHrqlaailrrrlalYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

28) ssaN in NC_011294


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/433 (99%), Positives = 432/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHrqlaailrrrlalYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

29) ssaN in NC_022221


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/433 (99%), Positives = 432/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHrqlaailrrrlalYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

30) ssaN in NC_016831


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/433 (99%), Positives = 432/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHrqlaailrrrlalYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

31) ssaN in NC_012125


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  658 bits (2489),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 432/433 (99%), Positives = 433/433 (100%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTTGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120
            NGSKALLSPFTST+GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHrqlaailrrrlalYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

32) ssaN in NC_011274


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  656 bits (2480),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRSHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRR HQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHrqlaailrrrlalYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

33) I137_05680 in NC_021984


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  656 bits (2480),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDSPALERVRALFVATTIAEFF  240
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSD PALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHrqlaailrrrlalYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

34) SeD_A1928 in NC_011205


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  655 bits (2477),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/433 (99%), Positives = 431/433 (99%), Gaps = 0/433 (0%)

Query  11   MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  70
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  71   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWK  130
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  131  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  190
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  191  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  250
            ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  251  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  310
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  311  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  370
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  371  EHRQlaailrrrlalylEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  430
            EHRQLAAILRRRLALY EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  431  ELLIEKLHQILTE  443
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

35) ssaN in NC_003198


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  652 bits (2464),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/433 (99%), Positives = 430/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGCELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG ELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADCNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            AD NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHrqlaailrrrlalYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

36) STBHUCCB_13730 in NC_016832


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  652 bits (2464),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/433 (99%), Positives = 430/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGCELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG ELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADCNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            AD NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHrqlaailrrrlalYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

37) TY21A_06520 in NC_021176


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  652 bits (2464),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/433 (99%), Positives = 430/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGCELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG ELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADCNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            AD NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHrqlaailrrrlalYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

38) ssaN in NC_004631


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  652 bits (2464),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/433 (99%), Positives = 430/433 (99%), Gaps = 0/433 (0%)

Query  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60
            MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGCELPDVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG ELP+VCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180
            DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADCNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            AD NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDNGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHrqlaailrrrlalYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420
            EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLHQILTE  433
            ELLIEKLHQILTE
Sbjct  421  ELLIEKLHQILTE  433

39) SARI_01567 in NC_010067


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  627 bits (2368),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 405/433 (94%), Positives = 420/433 (97%), Gaps = 0/433 (0%)

Query  1    MKNELMQCLRLKYPPPDGYRRWGRIQDISATLLNAWLPGVFMGELCCIKPGGEFAEVVGI  60
            MKNELMQ LRLKYPPPDGY RWGRIQD+SATLLNAWLPGVFMGELCCIKPG E+AEVVGI
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  61   NGSKALLSPFTSTVGLHCGQQVMALRRRHQVPVGEVLLGRVIDGFGRPLDGSELPEVCWK  120
            NGSKALLSPFTST GLHCGQQVMALRRRHQVPVGE LLGRVIDGFGRPLDG ELPEVCWK
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  DYDampppamvrrpmTQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPG  180
            DYDAMPPPAMVR+P+TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAP+
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  181  ADVNVLVLIGERGREVREFIDFTLTKESRKRCVIVVATSDRPALERVRALFVATTIAEFF  240
            AD NVLVLIGERGREVREFIDFTL+ E+RKRCVIVVATSDRPALERVRALFVATTIAEFF
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  241  RDHGKRVVLLADSLTRYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSI  300
            RD+GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAEMGHYPAIDVLATLSRVFPAVTSP  360
            TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE GHYPAIDVLATLSRVFP VTS 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  361  EHRQLATTLRRHLALYQDVELLIRIGEYQRGVDAAADKAIDTYPNICTFLRQSKDEVCGP  420
            EHRQLA+ LRR+LALYQ+VELLIRIGEYQRGVD+ +DKAIDTYP+ICTFLRQSKDEVCGP
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  421  ELLIEKLQQILTE  433
            ELLIEKL+QILTE
Sbjct  421  ELLIEKLHQILTE  433

40) SG1301 in NC_007712


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  446 bits (1679),  Expect = 2e-126, Method: Compositional matrix adjust.
 Identities = 270/431 (63%), Positives = 346/431 (81%), Gaps = 4/431 (0%)

Query  8    LASMLAQHLTPVDEPPDGYRLTGALLHIGATLLRARLPGAMMGEVCRLLPEGGLAEVVRI  67
            + + L Q+L     PPDGY   G + +++ATLL A+LPG  MGE+C + P   LAEVV I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  68   EGDDVLLSPYGPTEGLTYGQRVQPLRHRQRAPVGSALLGRVIDGLGRALDDMPDPQGPWR  127
            +G   LLSP+ +T GL  GQ+V +LR+R++ PVG ALLGRVIDG+GR+LD+   P+  W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  128  ELDAPPPPPLTRQRIARPLLTGIRAIDALLTCGEGQRIGIFAAAGGGKSTLLSMLSACPD  187
            + DA PPP++ RQ I++PL+TGIRAID++ TCGEGQR+GIF+A+G GKSTLL+ML   PD
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  188  CDVTVLALIGERGREVREFLEQTLDDEARQRCVTIVATSDRPALERVCALSLATTVAEAF  247
             D  VL LIGERGREVREF++ TL +E+R+RCV +VATSDRPALERV AL +ATT+AE F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  248  RDQGLRVLLLADSLTRYARAGREIALAAGETCVGSSYPPAVFAALPRLLERAGMGTVGSI  307
            RD+G RV+LLADSLTRYARA+REIALAAGET V++ YPP+VF+ALPRLLER+GMG  GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  308  TAFYTVLVEGDDINEPLADEVRSLLDGHIILSRRLAESGHFPAIDVLASLSRIMPSIVGE  367
            TAFYTVLVEGDD+NEPLADEVRSLLDGHI+LSRRLAE GH+PAIDVLA+LSR+ P + ++
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  368  RHIVLVATLRQLLSVYRDVELLVRVGEYQRGDDPLADRAVDAYPAICAFLQQRENTPCD-  426
             H  L A LR+ L++Y++VELL+R+GEYQRG D  +D+A+D+YP IC+FL+Q  +  C+ 
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  427  ---IDDLQQQL  434
               I+ L+Q L
Sbjct  421  ELLIEKLHQIL  431

41) ssaN in NC_012751


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  407 bits (1532),  Expect = 7e-115, Method: Compositional matrix adjust.
 Identities = 241/416 (58%), Positives = 328/416 (79%), Gaps = 0/416 (0%)

Query  14   VSERLKKKLAFTIPVPSGAVYRGPILDVGRTLIKVSLPGVRMGELCRIEPNRILAEVVSI  73
            + + L ++L +  P P G   +G I DV+ TL++  LPGV MGELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  74   EQKTALLSPFSSCDGLYAGQWVSPLKYSHQVPVSMSLMGRILNGLGHPIDDGPGLGYHWR  133
            +   ALLSPF+S  GL  GQ V +L+  HQVPV+ +L+GR+++G+G+P+D+       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  134  SLDNAPPDPLKRKPITDQLVTGIRSLDAILSCGEGQRIGIFAAAGVGKSTLLGMLCDGSD  193
              D  PP ++ R+PIT+ L+TGIR++D++ +CGEGQR+GIF+A+GVGKSTLL+MLC+++D
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  194  ADVMVLALIGERGREVREFLEQVLTPKARQRTVVVVATSDRPALERLKGIYTATTIAEYF  253
            AD  VL LIGERGREVREF++  L+  +R+R V+VVATSDRPALER+++++ ATTIAE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  254  RDCGKKVVLMVDSLTRYARAAREIGLAAGEPPAAGSFPPSVFAQMPRLLERTGNSDLGSI  313
            RD GK+VVL+ DSLTRYARAAREI+LAAGE + +G +PP+VF+ +PRLLERTG ++ GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  314  TAFYTVLVEGDDMNEPVADEVRSLLDGHIILSRKLAGAGHYPAIDIAASVSRIMPQIASS  373
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHI+LSR+LA  GHYPAID+ A++SR+ P ++S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  374  WHLEMAQKLRFILARYEEIELLVRVGEYQKGQDLEADDALKRYPAVCNFLKQKGGE  429
             H ++A  LR  LA Y+E+ELL+R+GEYQ+G D ++D A+  YP +C FL+Q  +E
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

42) A1122_03805 in NC_017168


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  399 bits (1500),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 248/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  9    LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  68
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  69   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  128
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  129  ELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  188
            + D  PP+++ RQP+ Q L TGIRAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  189  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  248
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  249  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  308
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  309  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  368
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  369  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  428
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  429  D  429
            +
Sbjct  421  E  421

43) YpAngola_A3933 in NC_010159


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  399 bits (1500),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 248/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  9    LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  68
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  69   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  128
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  129  ELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  188
            + D  PP+++ RQP+ Q L TGIRAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  189  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  248
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  249  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  308
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  309  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  368
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  369  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  428
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  429  D  429
            +
Sbjct  421  E  421

44) YPA_4016 in NC_008150


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  399 bits (1501),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 248/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  12   LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  71
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  72   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  131
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  132  ELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  191
            + D  PP+++ RQP+ Q L TGIRAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  192  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  251
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  252  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  311
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  312  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  371
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  372  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  431
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  432  D  432
            +
Sbjct  421  E  421

45) YPC_0741 in NC_017265


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  399 bits (1500),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 248/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  9    LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  68
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  69   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  128
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  129  ELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  188
            + D  PP+++ RQP+ Q L TGIRAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  189  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  248
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  249  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  308
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  309  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  368
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  369  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  428
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  429  D  429
            +
Sbjct  421  E  421

46) fliI1 in NC_005810


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  399 bits (1500),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 248/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  10   LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  69
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  70   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  129
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  130  ELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  189
            + D  PP+++ RQP+ Q L TGIRAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  190  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  249
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  250  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  309
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  310  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  369
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  370  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  429
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  430  D  430
            +
Sbjct  421  E  421

47) YPO0267 in NC_003143


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  399 bits (1500),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 248/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  9    LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  68
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  69   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  128
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  129  ELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  188
            + D  PP+++ RQP+ Q L TGIRAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  189  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  248
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  249  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  308
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  309  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  368
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  369  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  428
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  429  D  429
            +
Sbjct  421  E  421

48) YPD4_0231 in NC_017154


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  399 bits (1500),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 248/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  9    LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  68
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  69   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  128
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  129  ELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  188
            + D  PP+++ RQP+ Q L TGIRAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  189  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  248
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  249  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  308
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  309  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  368
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  369  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  428
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  429  D  429
            +
Sbjct  421  E  421

49) YPD8_0236 in NC_017160


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  399 bits (1500),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 248/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  9    LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  68
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  69   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  128
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  129  ELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  188
            + D  PP+++ RQP+ Q L TGIRAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  189  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  248
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  249  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  308
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  309  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  368
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  369  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  428
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  429  D  429
            +
Sbjct  421  E  421

50) fliI in NC_004088


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  399 bits (1500),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 248/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  9    LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  68
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  69   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  128
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  129  ELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  188
            + D  PP+++ RQP+ Q L TGIRAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  189  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  248
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  249  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  308
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  309  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  368
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  369  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  428
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  429  D  429
            +
Sbjct  421  E  421

51) YPN_3401 in NC_008149


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  399 bits (1501),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 248/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  12   LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  71
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  72   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  131
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  132  ELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  191
            + D  PP+++ RQP+ Q L TGIRAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  192  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  251
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  252  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  311
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  312  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  371
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  372  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  431
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  432  D  432
            +
Sbjct  421  E  421

52) YPDSF_3704 in NC_009381


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  399 bits (1501),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 248/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  12   LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  71
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  72   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  131
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  132  ELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  191
            + D  PP+++ RQP+ Q L TGIRAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  192  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  251
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  252  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  311
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  312  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  371
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  372  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  431
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  432  D  432
            +
Sbjct  421  E  421

53) YPZ3_0229 in NC_014029


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  399 bits (1500),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 248/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  9    LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  68
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  69   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  128
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  129  ELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  188
            + D  PP+++ RQP+ Q L TGIRAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  189  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  248
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  249  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  308
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  309  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  368
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  369  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  428
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  429  D  429
            +
Sbjct  421  E  421

54) YPTB0323 in NC_006155


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  399 bits (1500),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 248/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  9    LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  68
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  69   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  128
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  129  ELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  188
            + D  PP+++ RQP+ Q L TGIRAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  189  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  248
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  249  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  308
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  309  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  368
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  369  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  428
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  429  D  429
            +
Sbjct  421  E  421

55) YPTS_0347 in NC_010634


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  399 bits (1500),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 248/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  9    LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  68
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  69   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  128
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  129  ELDCPPPSPLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  188
            + D  PP+++ RQP+ Q L TGIRAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  189  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  248
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  249  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  308
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  309  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  368
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  369  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  428
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  429  D  429
            +
Sbjct  421  E  421

56) YpsIP31758_3818 in NC_009708


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  398 bits (1499),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 247/421 (59%), Positives = 324/421 (77%), Gaps = 0/421 (0%)

Query  9    LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  68
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  69   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  128
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  129  ELDCPPPSPLTRQPVEQMLTTGVRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  188
            + D  PP+++ RQP+ Q L TG+RAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  189  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  248
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  249  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  308
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  309  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  368
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  369  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  428
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  429  D  429
            +
Sbjct  421  E  421

57) YPK_3906 in NC_010465


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  396 bits (1490),  Expect = 1e-111, Method: Compositional matrix adjust.
 Identities = 247/421 (59%), Positives = 323/421 (77%), Gaps = 0/421 (0%)

Query  9    LTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASLPNVAQGELCRIEPQGMLAEVVSI  68
            +   L Q+L    +PP+G   +G I ++++TLL A LP V  GELC I P   LAEVV+I
Sbjct  1    MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI  60

Query  69   EQEMALLSPFASSDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPIDGGPPLTGQWR  128
            +   ALLSPF+S+ GL+CGQ V +L + H+V VG  L GR++DG+G P+DG       W+
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  129  ELDCPPPSPLTRQPVEQMLTTGGRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSA  188
            + D  PP+++ RQP+ Q L TG RAID++ +CGEGQR+GIF+A+GVGKSTLL+MLC  + 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  189  ADVMVLALIGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYF  248
            AD  VL LIGERGREVREF++  L+ E+R R V+VVATSDRPALER+++L  ATT+AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  249  RERGLKVLLLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSI  308
            R+ G +V+LLADSLTRYARAAREI+LAAGE + +G +PP+VF+ LPRLLERTG +++GSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  309  TAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA  368
            TAFYTVLVEGDDMNEP+ADEVRSLLDGHIVLSRRLA  GHYPAID+ A++SR+ P + S 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  369  GQLAMAQKLRRMLACYQEIELLVQIGEYQAGEDLQADEALQRYPAICAFLQQDHSLTRDP  428
             +  +A  LRR LA YQE+ELL++IGEYQ G D ++D A++ YP IC+FL+Q      +P
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  429  D  429
            +
Sbjct  421  E  421

58) Sbal117_2086 in NC_017579


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  377 bits (1416),  Expect = 9e-106, Method: Compositional matrix adjust.
 Identities = 238/412 (58%), Positives = 317/412 (77%), Gaps = 3/412 (0%)

Query  32   FGKVQEVGATLVRATLPGAHQGELCLI--GNRLRAEVVAVKGNEALLSPFDVTAGLCSGE  89
             G++Q+V+ATL+ A LPG   GELC I  G+ L AEVV+++G+ ALLSPF  TAGL  G+
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-AEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  90   LVETLGHGHQVPLGQGLLGRVVDGLGAPMDGYGLTATALRPNQGSAPNPLSRQLIDTVMP  149
             V +L + HQVP+G++LLGRV+DG+G P+DG  L     +  ++ +P ++ RQ I   + 
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLM  140

Query  150  MGIRAIDSALACGVGQRIGIFAAAGGGKSTLLGMIAAHCQADVIVLALVGERGREVREFI  209
             GIRAIDS  +CG GQR+GIF+A+G GKSTLL+M+    +AD  VL L+GERGREVREFI
Sbjct  141  TGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFI  200

Query  210  EYNLTPEARARTVMVVATSDRPPLERMKATLTATTIAEYFRDQGKNVLLMVDSLTRFARS  269
            ++ L+ E+R R V+VVATSDRP+LER++A + ATTIAE+FRD+GK V+L+ DSLTR+AR+
Sbjct  201  DFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARA  260

Query  270  AREIALAAGESPVSSGYPPSVFVNLSALVERAGPAAQGSITGIYTVLVEGDDMNEPIADE  329
            AREIALAAGE++VS+ YPP+VF  L+ L+ER+G + +GSIT++YTVLVEGDDMNEP+ADE
Sbjct  261  AREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADE  320

Query  330  VRSLLDGHIVLSRRLAGAGHYPAIDINASVSRVMDQIVSPEQRCHAAKMRQLLALYQEVQ  389
            VRSLLDGHIVLSRRLA  GHYPAID+ A++SRV   + S E+R  AA +R+ LALYQEV+
Sbjct  321  VRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVE  380

Query  390  LLIRVGEYVKGADKETDEAVARHQDIQQFLCQSVNEFSPYEETLQKLQLLLS  441
            LLIR+GEY +G D +TD A+    DI  FL QS +E    E  ++KL+ +L+
Sbjct  381  LLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

59) Sbal_1970 in NC_009052


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  377 bits (1416),  Expect = 9e-106, Method: Compositional matrix adjust.
 Identities = 238/412 (58%), Positives = 317/412 (77%), Gaps = 3/412 (0%)

Query  32   FGKVQEVGATLVRATLPGAHQGELCLI--GNRLRAEVVAVKGNEALLSPFDVTAGLCSGE  89
             G++Q+V+ATL+ A LPG   GELC I  G+ L AEVV+++G+ ALLSPF  TAGL  G+
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-AEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  90   LVETLGHGHQVPLGQGLLGRVVDGLGAPMDGYGLTATALRPNQGSAPNPLSRQLIDTVMP  149
             V +L + HQVP+G++LLGRV+DG+G P+DG  L     +  ++ +P ++ RQ I   + 
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLM  140

Query  150  MGIRAIDSALACGVGQRIGIFAAAGGGKSTLLGMIAAHCQADVIVLALVGERGREVREFI  209
             GIRAIDS  +CG GQR+GIF+A+G GKSTLL+M+    +AD  VL L+GERGREVREFI
Sbjct  141  TGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFI  200

Query  210  EYNLTPEARARTVMVVATSDRPPLERMKATLTATTIAEYFRDQGKNVLLMVDSLTRFARS  269
            ++ L+ E+R R V+VVATSDRP+LER++A + ATTIAE+FRD+GK V+L+ DSLTR+AR+
Sbjct  201  DFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARA  260

Query  270  AREIALAAGESPVSSGYPPSVFVNLSALVERAGPAAQGSITGIYTVLVEGDDMNEPIADE  329
            AREIALAAGE++VS+ YPP+VF  L+ L+ER+G + +GSIT++YTVLVEGDDMNEP+ADE
Sbjct  261  AREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADE  320

Query  330  VRSLLDGHIVLSRRLAGAGHYPAIDINASVSRVMDQIVSPEQRCHAAKMRQLLALYQEVQ  389
            VRSLLDGHIVLSRRLA  GHYPAID+ A++SRV   + S E+R  AA +R+ LALYQEV+
Sbjct  321  VRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVE  380

Query  390  LLIRVGEYVKGADKETDEAVARHQDIQQFLCQSVNEFSPYEETLQKLQLLLS  441
            LLIR+GEY +G D +TD A+    DI  FL QS +E    E  ++KL+ +L+
Sbjct  381  LLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

60) Sbal175_2395 in NC_017571


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  376 bits (1414),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 237/412 (58%), Positives = 317/412 (77%), Gaps = 3/412 (0%)

Query  32   FGKVQEVGATLVRATLPGAHQGELCLI--GNRLRAEVVAVKGNEALLSPFDVTAGLCSGE  89
             G++Q+V+ATL+ A LPG   GELC I  G+ L AEVV+++G+ ALLSPF  TAGL  G+
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-AEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  90   LVETLGHGHQVPLGQGLLGRVVDGLGAPMDGYGLTATALRPNQGSAPNPLSRQLIDTVMP  149
             V +L + HQVP+G++LLGRV+DG+G P+DG  L     +  ++ +P ++ RQ I   + 
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLM  140

Query  150  MGIRAIDSALACGVGQRIGIFAAAGGGKSTLLGMIAAHCQADVIVLALVGERGREVREFI  209
             GIRAIDS  +CG GQR+GIF+A+G GKSTLL+M+    +AD  VL L+GERGREVREFI
Sbjct  141  TGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFI  200

Query  210  EYNLTPEARARTVMVVATSDRPPLERMKATLTATTIAEYFRDQGKNVLLMVDSLTRFARS  269
            ++ L+ E+R R V+VVATSDRP+LER++A + ATTIAE+FRD+GK V+L+ DSLTR+AR+
Sbjct  201  DFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARA  260

Query  270  AREIALAAGESPVSSGYPPSVFVNLSALVERAGPAAQGSITGIYTVLVEGDNMNEPIADE  329
            AREIALAAGE++VS+ YPP+VF  L+ L+ER+G + +GSIT++YTVLVEGD+MNEP+ADE
Sbjct  261  AREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADE  320

Query  330  VRSLLDGHIVLSRRLAGAGHYPAIDINASVSRVMDQIVSPEQRCHAAKMRQLLALYQEVQ  389
            VRSLLDGHIVLSRRLA  GHYPAID+ A++SRV   + S E+R  AA +R+ LALYQEV+
Sbjct  321  VRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVE  380

Query  390  LLIRVGEYVKGADKETDEAVARHQDIQQFLCQSVNEFSPYEETLQKLQLLLS  441
            LLIR+GEY +G D +TD A+    DI  FL QS +E    E  ++KL+ +L+
Sbjct  381  LLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

61) fliI in NC_022269


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  375 bits (1409),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 226/413 (55%), Positives = 309/413 (75%), Gaps = 7/413 (1%)

Query  24   RGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLAEVVGFQQHHALLTPLGNMFGIS  83
            +GR+ +V++T+++A +PGV +GELC ++  ++    LAEVVG++   ALL+P+ +  G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPLGKMHEVGVGDHLLGKILDGLGRPFDGSQSTEPSAWYPVYRDAPPP-MQRKLI  142
               +V +L + H+V VG+ LLG+++DG+GRP+DG +  E   W   Y   PPP M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-W-KDYDAMPPPAMVRQPI  135

Query  143  EKPISMGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSADVDVTVLALIGERGRE  202
             +P+  G+R+ID++ TCGEGQR+GIF+A+G GKSTLLA L  ++D D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIEHDLGEEGMARSVLVVATSDRPAMERAKAAFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE   R V+VVATSDRPA+ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALP+L+ER+G ++KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVDKTHQAPAAHMREMLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   +    H+  AA +R  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLIKIGEYQHGADSRADMAIAQGDDIRAFLRQGTHEPSELEETVTQLR  435
            Y+EVELLI+IGEYQ+G D+ +D AI    DI +FLRQ+ +E    E  + +L+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

62) VIBHAR_01730 in NC_009783


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  375 bits (1409),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 226/413 (55%), Positives = 309/413 (75%), Gaps = 7/413 (1%)

Query  24   RGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLAEVVGFQQHHALLTPLGNMFGIS  83
            +GR+ +V++T+++A +PGV +GELC ++  ++    LAEVVG++   ALL+P+ +  G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPLGKMHEVGVGDHLLGKILDGLGRPFDGSQSTEPSAWYPVYRDAPPP-MQRKLI  142
               +V +L + H+V VG+ LLG+++DG+GRP+DG +  E   W   Y   PPP M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-W-KDYDAMPPPAMVRQPI  135

Query  143  EKPISMGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSADVDVTVLALIGERGRE  202
             +P+  G+R+ID++ TCGEGQR+GIF+A+G GKSTLLA L  ++D D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIEHDLGEEGMARSVLVVATSDRPAMERAKAAFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE   R V+VVATSDRPA+ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALP+L+ER+G ++KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVDKTHQAPAAHMREMLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   +    H+  AA +R  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLIKIGEYQHGADSRADMAIAQGDDIRAFLRQGTHEPSELEETVTQLR  435
            Y+EVELLI+IGEYQ+G D+ +D AI    DI +FLRQ+ +E    E  + +L+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

63) fliI in NC_021848


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  375 bits (1410),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 228/415 (55%), Positives = 310/415 (75%), Gaps = 7/415 (1%)

Query  24   RGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLAEVVGFQQHHALLTPLGNMFGIS  83
            +GR+ +V++T+++A +PGV +GELC ++  ++    LAEVVG++   ALL+P+ +  G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPMGKMHEVGVGDHLLGKILDGLGRPFDGAQSQEPSAWYPVYRDAPPP-MQRKLI  142
               +V ++ + H+V VG+ LLG+++DG+GRP+DG +  E   W   Y   PPP M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-W-KDYDAMPPPAMVRQPI  135

Query  143  EKPISLGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSADVDVTVLALIGERGRE  202
             +P+  G+R+ID++ TCGEGQR+GIF+A+G GKSTLLA L  ++D D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIEHDLGEEGMARSVLVVATSDRPAMERAKAAFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE   R V+VVATSDRPA+ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALP+L+ER+G ++KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVEPDHQASAAHLREMLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   +   +H+  AA LR  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLIKIGEYQHGADPRADLAIAQSDDIRAFLRQGTHEPSDLEGAIAQLKGI  437
            Y+EVELLI+IGEYQ+G D  +D AI    DI +FLRQ+ +E  + E  I +L  I
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

64) fliI in NC_021847


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  375 bits (1409),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 227/415 (55%), Positives = 310/415 (75%), Gaps = 7/415 (1%)

Query  24   RGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLAEVVGFQQHHALLTPLGNMFGIS  83
            +GR+ +V++T+++A +PGV +GELC ++  ++    LAEVVG++   ALL+P+ +  G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPMGKMHEVGVGDHLLGKILDGLGRPFDGAQSQDPSSWYPVYRDAPPP-MQRKLI  142
               +V ++ + H+V VG+ LLG+++DG+GRP+DG +  +   W   Y   PPP M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPAMVRQPI  135

Query  143  EKPISLGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSADIDVTVLALIGERGRE  202
             +P+  G+R+ID++ TCGEGQR+GIF+A+G GKSTLLA L  ++D D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIEHDLGEEGMARSVLVVATSDRPAMERAKAAFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE   R V+VVATSDRPA+ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALP+L+ER+G ++KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVEPDHQASAAHLREMLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   +   +H+  AA LR  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLIKIGEYQHGADPRADLAIAQSDDIRAFLRQGSHEPSDLEGAIAQLKGI  437
            Y+EVELLI+IGEYQ+G D  +D AI    DI +FLRQ+ +E  + E  I +L  I
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

65) VP1668 in NC_004603


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  375 bits (1408),  Expect = 4e-105, Method: Compositional matrix adjust.
 Identities = 227/415 (55%), Positives = 310/415 (75%), Gaps = 7/415 (1%)

Query  24   RGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLAEVVGFQQHHALLTPLGNMFGIS  83
            +GR+ +V++T+++A +PGV +GELC ++  ++    LAEVVG++   ALL+P+ +  G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPMGKMHEVGVGDHLLGKILDGLGRPFDGAQSQEPSAWYPVYRDAPPP-MQRKLI  142
               +V ++ + H+V VG+ LLG+++DG+GRP+DG +  E   W   Y   PPP M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-W-KDYDAMPPPAMVRQPI  135

Query  143  EKPISLGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSADVDVTVLALIGERGRE  202
             +P+  G+R+ID++ TCGEGQR+GIF+A+G GKSTLLA L  ++D D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIEHDLGEDGMARSVLVVATSDRPAMERAKAAFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+E+   R V+VVATSDRPA+ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALP+L+ER+G ++KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVEPDHQAYAAHLREMLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   +   +H+  AA LR  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLIKIGEYQHGADPRADLAIAQSDDIRAFLRQGTHEPSDLEGAIAQLKGI  437
            Y+EVELLI+IGEYQ+G D  +D AI    DI +FLRQ+ +E  + E  I +L  I
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

66) VPBB_1528 in NC_019955


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  374 bits (1407),  Expect = 5e-105, Method: Compositional matrix adjust.
 Identities = 228/415 (55%), Positives = 310/415 (75%), Gaps = 7/415 (1%)

Query  24   RGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLAEVVGFQQHHALLTPLGNMFGIS  83
            +GR+ +V++T+++A +PGV +GELC ++  ++    LAEVVG++   ALL+P+ +  G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPMGKMHEVGVGDHLLGKILDGLGRPFDGAQSQEPSAWYPVYRDAPPP-MQRKLI  142
               +V ++ + H+V VG+ LLG+++DG+GRP+DG +  E   W   Y   PPP M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-W-KDYDAMPPPAMVRQPI  135

Query  143  EKPISLGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSADVDVTVLALIGERGRE  202
             +P+  G+R+ID++ TCGEGQR+GIF+A+G GKSTLLA L  ++D D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIEHDLGEEGMARSVLVVATSDRPAMERAKAAFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE   R V+VVATSDRPA+ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALP+L+ER+G ++KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVEPNHQASAAHLREMLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   +   +H+  AA LR  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLIKIGEYQHGADPRADLAIAQSDDIRAFLRQGTHEPSDLEGAIAQLKGI  437
            Y+EVELLI+IGEYQ+G D  +D AI    DI +FLRQ+ +E  + E  I +L  I
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

67) Sbal195_2274 in NC_009997


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  374 bits (1404),  Expect = 9e-105, Method: Compositional matrix adjust.
 Identities = 235/396 (60%), Positives = 307/396 (78%), Gaps = 3/396 (0%)

Query  32   FGKVQEVGATLVRATLPGAHQGELCLI--GNRLSAEVVAVKGDEALLSPFDVTAGLCSGE  89
             G++Q+V+ATL+ A LPG   GELC I  G+ L AEVV+++G  ALLSPF  TAGL  G+
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-AEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  90   LVETLGHGHQVPLGQGLLGRVVDGLGAPMDGYGLTATSLRPNQGSAPNPLSRQLIDTVMP  149
             V +L + HQVP+G++LLGRV+DG+G P+DG  L     +  ++ +P ++ RQ I   + 
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLM  140

Query  150  MGIRAIDSALACGIGQRIGIFAAAGGGKSTLLGMIAAHCQADVIVLTLVGERGREVREFI  209
             GIRAIDS  +CG GQR+GIF+A+G GKSTLL+M+    +AD  VL L+GERGREVREFI
Sbjct  141  TGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFI  200

Query  210  EYNLTPEARARTVMVVATSDRPPLERMKATLTATTIAEYFRDQGKNVLLMVDSLTRFARS  269
            ++ L+ E+R R V+VVATSDRP+LER++A + ATTIAE+FRD+GK V+L+ DSLTR+AR+
Sbjct  201  DFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARA  260

Query  270  AREIALAAGESPVSSGYPPSVFVNLSALVERAGPAAKGSITGIYTVLVEGDDMNEPIADE  329
            AREIALAAGE++VS+ YPP+VF  L+ L+ER+G + KGSIT++YTVLVEGDDMNEP+ADE
Sbjct  261  AREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADE  320

Query  330  VRSLLDGHIVLSRRLAGAGHYPAIDINASVSRVMDQIVSPEQRCNAAKMRQLLALYQEVQ  389
            VRSLLDGHIVLSRRLA  GHYPAID+ A++SRV   + S E+R  AA +R+ LALYQEV+
Sbjct  321  VRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVE  380

Query  390  LLIRVGEYVQGEDQETDEAVARHQDIQQFLCQSVNE  425
            LLIR+GEY +G D +TD A+    DI  FL QS +E
Sbjct  381  LLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

68) Sbal678_2284 in NC_016901


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  374 bits (1404),  Expect = 9e-105, Method: Compositional matrix adjust.
 Identities = 235/396 (60%), Positives = 307/396 (78%), Gaps = 3/396 (0%)

Query  32   FGKVQEVGATLVRATLPGAHQGELCLI--GNRLSAEVVAVKGDEALLSPFDVTAGLCSGE  89
             G++Q+V+ATL+ A LPG   GELC I  G+ L AEVV+++G  ALLSPF  TAGL  G+
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-AEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  90   LVETLGHGHQVPLGQGLLGRVVDGLGAPMDGYGLTATSLRPNQGSAPNPLSRQLIDTVMP  149
             V +L + HQVP+G++LLGRV+DG+G P+DG  L     +  ++ +P ++ RQ I   + 
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLM  140

Query  150  MGIRAIDSALACGIGQRIGIFAAAGGGKSTLLGMIAAHCQADVIVLTLVGERGREVREFI  209
             GIRAIDS  +CG GQR+GIF+A+G GKSTLL+M+    +AD  VL L+GERGREVREFI
Sbjct  141  TGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFI  200

Query  210  EYNLTPEARARTVMVVATSDRPPLERMKATLTATTIAEYFRDQGKNVLLMVDSLTRFARS  269
            ++ L+ E+R R V+VVATSDRP+LER++A + ATTIAE+FRD+GK V+L+ DSLTR+AR+
Sbjct  201  DFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARA  260

Query  270  AREIALAAGESPVSSGYPPSVFVNLSALVERAGPAAKGSITGIYTVLVEGDDMNEPIADE  329
            AREIALAAGE++VS+ YPP+VF  L+ L+ER+G + KGSIT++YTVLVEGDDMNEP+ADE
Sbjct  261  AREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADE  320

Query  330  VRSLLDGHIVLSRRLAGAGHYPAIDINASVSRVMDQIVSPEQRCNAAKMRQLLALYQEVQ  389
            VRSLLDGHIVLSRRLA  GHYPAID+ A++SRV   + S E+R  AA +R+ LALYQEV+
Sbjct  321  VRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVE  380

Query  390  LLIRVGEYVQGEDQETDEAVARHQDIQQFLCQSVNE  425
            LLIR+GEY +G D +TD A+    DI  FL QS +E
Sbjct  381  LLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

69) sctN in NC_005126


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  370 bits (1389),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 230/421 (55%), Positives = 314/421 (75%), Gaps = 11/421 (2%)

Query  19   CRLIQIRGRVTQVTGTLLKAVIPGVRIGELCHLRNPDNTLSLLAEVIGFQQHQALLTPLG  78
            CR    +GR+ +V++TLL+A +PGV +GELC ++  ++    LAEV+G++  +ALL+P+ 
Sbjct  20   CR----WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFT  71

Query  79   EMFGISSNTEVSPTGAMHQVGVGDYLLGQVLDGLGNPFSGGQLPEPQAWYPVYRDAPAP-  137
               G+    +V +    HQV VG+ LLG+V+DG+G P+ G +LPE   W   Y   P+P 
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV-CW-KDYDAMPPPA  129

Query  138  MSRKRIEHPLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLSTLIRSAEVDVTVLALI  197
            M R+ I +PL  G+RAID++ TCGEGQR+GIF+A+G GKSTLL+ L  +++ D  VL LI
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  198  GERGREVREFIESDLGEEGLKRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGKRVLL  257
            GERGREVREFI+  L+EE  KR V+VVATSDRPA+ER +A FVAT+IAE+FRD+GKRV+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  258  LMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDKGSITALYTVLVE  317
            L DS+TR+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G ++KGSITA+YTVLVE
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  318  GDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIITPEHQAQAGLL  377
            GDDM EP+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   + + EH+  A++L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  378  RKWLAKYEEVELLLQIGEYQKGQDPVADNAIAHIEAIRNWLRQGTHEPSDLPQTLAQLQQ  437
            R++LA Y+EVELL++IGEYQ+G D  +D+AI     I   LRQ+ +E  +    + +L+Q
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

Query  438  I  438
            I
Sbjct  430  I  430

70) yscN in NC_007645


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  369 bits (1388),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 219/415 (53%), Positives = 308/415 (75%), Gaps = 8/415 (1%)

Query  24   RGRVTNVVGTIIRAIVPGAQIGELCYLESAGAPRLLAEVVGFQEKEALLTPMGDMLGIST  83
            +GR+ +V +T++ A +PG  +GELC + ++     LAEVVG++   ALL+P     G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHC  78

Query  84   ATEVITTGQSHHIAVGPHLLGRVLDGMGAPMDGKNADFPSDLQHYPVYADAPSP-MMRRM  142
            + +V++  + H+++VG  LLGRV+DG G P+DG+  ++P        Y   P+P M+R+ 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR--ELPE--VCWKDYDAMPPPAMVRQP  134

Query  143  ISEPLSLGVRALDGLLTCGEGQRMGVFAAAGGGKSTLLSMLVMGADVDVIVIALIGERGR  202
            I++PL  G+RA+D++ TCGEGQR+G+F+A+G GKSTLL+ML  ++D D  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  203  EVREFIEHNLGPEGLARSVLVISTSDRPSMERAKAAYVATTIAEYFRDQGQKVLLLMDSV  262
            EVREFI+  L+ E   R V+V++TSDRP++ER +A +VATTIAE+FRD+G++V+LL DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  263  TRFARAQREIGLAAGEPPTRRGFPPSVFATLPKLLERVGFNDKGSITALYTVLVEGDDMS  322
            TR+ARA REI+LAAGE +    +PP+VF++LP+LLER G  +KGSITA+YTVLVEGDDM+
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  323  EPIADEVRSILDGHIVLSRKLAATNHYPAIDVLASTSRVMTAITSPEHRQAAGKMRELMA  382
            EP+ADEVRS+LDGHIVLSR+LA   HYPAIDVLA+ SRV   +TS EHRQ A+ +R  +A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  383  KYVDVELLVKIGEYQRGSDPVADEAIAKIDRIRGFLKQATDEKCDFQTTLNALAQ  437
             Y +VELL++IGEYQRG D  +D AI     I  FL+Q+ DE C+ +  ++ L Q
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

71) Y11_35401 in NC_017564


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  367 bits (1378),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 247/412 (60%), Positives = 322/412 (79%), Gaps = 3/412 (0%)

Query  31   GPILDVGPTLLRAHLPGVALGELCRITSPDMLAEVVAIEQQTALLSPFASSAGLRCGQWI  90
            G I DV++TLL A LPGV +GELC I + + LAEVV+I+   ALLSPF+S+AGL+CGQ +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQV  82

Query  91   SPLGHEHrvrvgvdllgrvldglgEPIDAGPPLRGHWRELDCPPPDPLTRQPVQQILTTG  150
             +L + H+V VG  LLGRV+DG+G P+D+       W++ D  PP ++ RQP+ Q L TG
Sbjct  83   MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTG  142

Query  151  IRAIDGVLSCGEGQRIGIFAAAGVGKSSLLSMLCRGCRADIIVLALIGERGREVREFLEQ  210
            IRAID+V +CGEGQR+GIF+A+GVGKS+LL+MLC +  AD  VL LIGERGREVREF++ 
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDF  202

Query  211  VLTPEtrartvvvvatSDRPALERLKGIYTATTVAEYFRERGEKVLLMADSLTRYARAAR  270
             L+ ETR R V+VVATSDRPALER+++++ ATT+AE+FR+ G +V+L+ADSLTRYARAAR
Sbjct  203  TLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAR  262

Query  271  EIGLAAGEHPAMGSFPTSVFAALPRLLERAGNSERGSITAFYTVLVEGDDMNEPVADEVR  330
            EI+LAAGE +  G +P +VF+ALPRLLER+G +E+GSITAFYTVLVEGDDMNEP+ADEVR
Sbjct  263  EIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVR  322

Query  331  SLLDGHIVLSRQLAGAGHYPAIDIAASVSRIMPQIVSAEHRALAQKLRHIQACYQEIELL  390
            SLLDGHIVLSR+LA  GHYPAID+ A++SR+ P + S EHR LA  LR+  A YQE+ELL
Sbjct  323  SLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELL  382

Query  391  VRVGEYQEGQDLQADEALQRYPGICAFLQQESALSSCKTD--TADLTHTLVQ  440
            +R+GEYQ G D ++D A++ YP+IC+FL+Q      C  +     L + L +
Sbjct  383  IRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD-EVCGPELLIEKLHQILTE  433

72) YE105_C0333 in NC_015224


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  366 bits (1377),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 244/393 (63%), Positives = 316/393 (81%), Gaps = 0/393 (0%)

Query  31   GPILDVGPTLLRAHLPGVALGELCRITSPDMLAEVVAIEQQTALLSPFASSAGLRCGQWI  90
            G I DV++TLL A LPGV +GELC I + + LAEVV+I+   ALLSPF+S+AGL+CGQ +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQV  82

Query  91   SPLGHEHrvrvgvdllgrvldglgEPIDAGPPLRGHWRELDCPPPDPLTRQPVQQILTTG  150
             +L + H+V VG  LLGRV+DG+G P+D+       W++ D  PP ++ RQP+ Q L TG
Sbjct  83   MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTG  142

Query  151  IRAIDGVLSCGEGQRIGIFAAAGVGKSSLLSMLCRGCRADIIVLALIGERGREVREFLEQ  210
            IRAID+V +CGEGQR+GIF+A+GVGKS+LL+MLC +  AD  VL LIGERGREVREF++ 
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDF  202

Query  211  VLTPEtrartvvvvatSDRPALERLKGIYTATTVAEYFRERGEKVLLMADSLTRYARAAR  270
             L+ ETR R V+VVATSDRPALER+++++ ATT+AE+FR+ G +V+L+ADSLTRYARAAR
Sbjct  203  TLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAR  262

Query  271  EIGLAAGEHPAMGSFPTSVFAALPRLLERAGNSERGSITAFYTVLVEGDDMNEPVADEVR  330
            EI+LAAGE +  G +P +VF+ALPRLLER+G +E+GSITAFYTVLVEGDDMNEP+ADEVR
Sbjct  263  EIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVR  322

Query  331  SLLDGHIVLSRQLAGAGHYPAIDIAASVSRIMPQIVSAEHRALAQKLRHIQACYQEIELL  390
            SLLDGHIVLSR+LA  GHYPAID+ A++SR+ P + S EHR LA  LR+  A YQE+ELL
Sbjct  323  SLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELL  382

Query  391  VRVGEYQEGQDLQADEALQRYPGICAFLQQESA  423
            +R+GEYQ G D ++D A++ YP+IC+FL+Q   
Sbjct  383  IRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD  415

73) PLES_36301 in NC_011770


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  366 bits (1376),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 226/410 (56%), Positives = 312/410 (77%), Gaps = 11/410 (2%)

Query  19   CRPIQIRGRVTQVTGTLLKAVVPGVRIGELCQLRNPDQSLALLAEVIGFQQHQALLTPLG  78
            CR    +GR+ +V++TLL+A +PGV +GELC ++  ++    LAEV+G++  +ALL+P+ 
Sbjct  20   CR----WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFT  71

Query  79   EMLGVSSNTEVSPTGGMHRVAVGEHLLGRVLDGLGRPFDGSPPAEPAAWYPVYRDAPPP-  137
               G+    +V +    H+V+VGE LLGRV+DG+GRP+DG   +E   W   Y   PPP 
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPA  129

Query  138  MSRRLIERPLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTILALV  197
            M R+ I +PL  G+RAID++ TCGEGQR+GIF+A+G GKSTLLA L   ++ D  +L L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  198  GERGREVREFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLL  257
            GERGREVREFI+  L+E+  +R V+VVATSDRPA+ER +A FVAT+IAE+FRD+G+RV+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  258  LMDSLTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVE  317
            L DSLTR+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G +E+GSITA+YTVLVE
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  318  GDDMSEPVADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRL  377
            GDDM+EP+ADE RS+LDGHIVLSR+LA   HYPAIDVL ++SRV   +  +++R+ A+ L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  378  REWLAKYEEVELLLKIGEYQKGQDSEADQAIEKIGAIRQWLRQGTHETSD  427
            R +LA Y+EVELL++IGEYQ+G D+++D+AI+    I   LRQ+ +E  +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

74) PAM18_3349 in NC_017548


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  366 bits (1376),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 226/410 (56%), Positives = 313/410 (77%), Gaps = 11/410 (2%)

Query  8    CRPIQIRGRVTQVTGTLLKAVVPGVRIGELCQLRNPDQSLALLAEVIGFQQHQALLTPLG  67
            CR    +GR+ +V++TLL+A +PGV +GELC ++  ++    LAEV+G++  +ALL+P+ 
Sbjct  20   CR----WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFT  71

Query  68   EMLGVSSNTEVSPTGGMHRVAVGEHLLGQVLDGLGRPFDGSPPAEPAAWYPVYRDAPPP-  126
               G+    +V +    H+V+VGE LLG+V+DG+GRP+DG   +E   W   Y   PPP 
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPA  129

Query  127  MSRRLIERPLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTVLALV  186
            M R+ I +PL  G+RAID++ TCGEGQR+GIF+A+G GKSTLLA L   ++ D  VL L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  187  GERGREVREFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLL  246
            GERGREVREFI+  L+E+  +R V+VVATSDRPA+ER +A FVAT+IAE+FRD+G+RV+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  247  LMDSLTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVE  306
            L DSLTR+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G +E+GSITA+YTVLVE
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  307  GDDMSEPVADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRL  366
            GDDM+EP+ADE RS+LDGHIVLSR+LA   HYPAIDVL ++SRV   +  +++R+ A+ L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  367  REWLAKYEEVELLLKIGEYQKGQDSEADRAIEKIAAIRQWLRQGTHETSD  416
            R +LA Y+EVELL++IGEYQ+G D+++D+AI+  + I   LRQ+ +E  +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

75) sctN in NC_012962


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  366 bits (1376),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 231/425 (55%), Positives = 316/425 (75%), Gaps = 13/425 (3%)

Query  19   CRLIQIRGRVTQVTGTLLKAVIPGVRIGELCHLRNPDNTLSLLAEVIGFQQHQALLTPLG  78
            CR    +GR+ +V++TLL+A +PGV +GELC ++  ++    LAEV+G++  +ALL+P+ 
Sbjct  20   CR----WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFT  71

Query  79   EMFGISSNTEVSPTGAMHQVGVGDYLLGQILDGLGNPFSGGQLPEPQAWYPVYRDAPAP-  137
               G+    +V +    HQV VG+ LLG+++DG+G P+ G +LPE   W   Y   P+P 
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV-CW-KDYDAMPPPA  129

Query  138  MSRKRIEHPLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLSTLIRNAEVDVTVLALI  197
            M R+ I +PL  G+RAID++ TCGEGQR+GIF+A+G GKSTLL+ L   ++ D  VL LI
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  198  GERGREVREFIESDLGEEGLKRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGKRVLL  257
            GERGREVREFI+  L+EE  KR V+VVATSDRPA+ER +A FVAT+IAE+FRD+GKRV+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  258  LMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDKGSITALYTVLVE  317
            L DS+TR+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G ++KGSITA+YTVLVE
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  318  GDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMSQIITPEHQAQANLL  377
            GDDM EP+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV + + + EH+  A +L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  378  RHWLAKYEEVELLLQIGEYQKGQDPVADNAIAHIEAIRGWLRQGTHEPSDLPQTLV-LLQ  436
            R++LA Y+EVELL++IGEYQ+G D  +D+AI     I   LRQ+ +E  + P+ L+  L+
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG-PELLIEKLH  428

Query  437  QITKQ  441
            QI  +
Sbjct  429  QILTE  433

76) SVI_2234 in NC_014012


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  365 bits (1372),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 227/413 (55%), Positives = 312/413 (76%), Gaps = 5/413 (1%)

Query  32   FGKVQEVGSTLVRATLPGAHQGELCLI--GHKLKSEVIAVKGDEVLLSPFDVTSWLQTGA  89
             G++Q+V++TL+ A LPG   GELC I  G+ L +EV++++G   LLSPF  T+ L+ G 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-AEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  90   LVEPMGHGHQVLLGSELLGRVVDGLGDVMDGYPLDACECRPNYGAAPNP-LSRSLIDTVM  148
             V ++ + HQV +G  LLGRV+DG+G  +DG  L    C+ +Y+A P P + R  I   +
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCWKDYDAMPPPAMVRQPITQPL  139

Query  149  PMGIRAIDSALACGVGQRIGIFAAAGGGKSTLLGMIASHCEADVIVLALVGERGREVREF  208
              GIRAIDS  +CG GQR+GIF+A+G GKSTLL+M+ +  +AD  VL L+GERGREVREF
Sbjct  140  MTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREF  199

Query  209  IEYNLTPEARARTVMVVATSDRPPLERMKATLTATTIAEYFRDQGKNVLLMVDSLTRFAR  268
            I++ L+ E+R R V+VVATSDRP+LER++A + ATTIAE+FRD+GK V+L+ DSLTR+AR
Sbjct  200  IDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYAR  259

Query  269  SAREISLAAGEAPVSNGYPPSVFVNLSALVERAGPAAKGSITGVYTVLVEGDNMNEPIAD  328
            +AREI+LAAGE++VS  YPP+VF  L+ L+ER+G + KGSIT+ YTVLVEGD+MNEP+AD
Sbjct  260  AAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLAD  319

Query  329  EVRSLLDGHIVLSRKLAGAGHYPAIDINASVSRVMDQIVTQEQKKNAAKMRQMLALYDEV  388
            EVRSLLDGHIVLSR+LA  GHYPAID+ A++SRV   + ++E+++ AA +R+ LALY+EV
Sbjct  320  EVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEV  379

Query  389  QLLLRVGEYVQGQDKQTDEAVMRYGAIKDFLRQSVDEFSPYEVSQQQLAAVLS  441
            +LL+R+GEY +G D +TD A+  Y  I  FLRQS DE    E+  ++L  +L+
Sbjct  380  ELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

77) pscN in NC_017549


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  363 bits (1364),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 225/410 (55%), Positives = 311/410 (76%), Gaps = 11/410 (2%)

Query  8    CRPIQIRGRVTQVTGTLLKAVVPGVRIGELCQLRNPDQSLALLAEVIGFQQHQALLTPLG  67
            CR    +GR+ +V++TLL+A +PGV +GELC ++  ++    LAEV+G++  +ALL+P+ 
Sbjct  20   CR----WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFT  71

Query  68   EMLGVSSNTEVSPTGGMHRVAVGEHLLGQVLDGLGRPFDGSPPAEPAAWYPVYRDAPQP-  126
               G+    +V +    H+V+VGE LLG+V+DG+GRP+DG   +E   W   Y   P P 
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPA  129

Query  127  MSRRLIERPLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTVLALV  186
            M R+ I +PL  G+RAID++ TCGEGQR+GIF+A+G GKSTLLA L   ++ D  VL L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  187  GERGREVREFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLL  246
            GERGREVREFI+  L+E+  +R V+VVATSDRPA+ER +A FVAT+IAE+FRD+G+RV+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  247  LMDSLTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVE  306
            L DSLTR+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G +E+GSITA+YTVLVE
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  307  GDDMSEPVADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRL  366
            GDDM+EP+ADE RS+LDGHIVLSR+LA   HYPAIDVL ++SRV   +  +++R+ A+ L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  367  REWLAKYEEVELLLKIGEYQKGQDSEADQAIEKIGAIRQWLRQGTHETSD  416
            R +LA Y+EVELL++IGEYQ+G D+++D+AI+    I   LRQ+ +E  +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

78) PA1697 in NC_002516


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  363 bits (1365),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 225/410 (55%), Positives = 311/410 (76%), Gaps = 11/410 (2%)

Query  19   CRPIQIRGRVTQVTGTLLKAVVPGVRIGELCQLRNPDQSLALLAEVIGFQQHQALLTPLG  78
            CR    +GR+ +V++TLL+A +PGV +GELC ++  ++    LAEV+G++  +ALL+P+ 
Sbjct  20   CR----WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFT  71

Query  79   EMLGVSSNTEVSPTGGMHRVAVGEHLLGQVLDGLGRPFDGSPPAEPAAWYPVYRDAPQP-  137
               G+    +V +    H+V+VGE LLG+V+DG+GRP+DG   +E   W   Y   P P 
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPA  129

Query  138  MSRRLIERPLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTVLALV  197
            M R+ I +PL  G+RAID++ TCGEGQR+GIF+A+G GKSTLLA L   ++ D  VL L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  198  GERGREVREFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLL  257
            GERGREVREFI+  L+E+  +R V+VVATSDRPA+ER +A FVAT+IAE+FRD+G+RV+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  258  LMDSLTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVE  317
            L DSLTR+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G +E+GSITA+YTVLVE
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  318  GDDMSEPVADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRL  377
            GDDM+EP+ADE RS+LDGHIVLSR+LA   HYPAIDVL ++SRV   +  +++R+ A+ L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  378  REWLAKYEEVELLLKIGEYQKGQDSEADRAIEKIGAIRQWLRQGTHETSD  427
            R +LA Y+EVELL++IGEYQ+G D+++D+AI+    I   LRQ+ +E  +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

79) G655_16695 in NC_020912


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  363 bits (1363),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 225/410 (55%), Positives = 311/410 (76%), Gaps = 11/410 (2%)

Query  19   CRPIQIRGRVTQVTGTLLKAVVPGVRIGELCQLRNPDQSLALLAEVIGFQQHQALLTPLG  78
            CR    +GR+ +V++TLL+A +PGV +GELC ++  ++    LAEV+G++  +ALL+P+ 
Sbjct  20   CR----WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFT  71

Query  79   EMLGVSSNTEVSPTGGMHRVAVGEHLLGQVLDGLGRPFDGSPPAEPAAWYPVYRDAPQP-  137
               G+    +V +    H+V+VGE LLG+V+DG+GRP+DG   +E   W   Y   P P 
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPA  129

Query  138  MSRRLIERPLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTVLALV  197
            M R+ I +PL  G+RAID++ TCGEGQR+GIF+A+G GKSTLLA L   ++ D  VL L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  198  GERGREVREFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLL  257
            GERGREVREFI+  L+E+  +R V+VVATSDRPA+ER +A FVAT+IAE+FRD+G+RV+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  258  LMDSLTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVE  317
            L DSLTR+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G +E+GSITA+YTVLVE
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  318  GDDMSEPVADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRL  377
            GDDM+EP+ADE RS+LDGHIVLSR+LA   HYPAIDVL ++SRV   +  +++R+ A+ L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  378  REWLAKYEEVELLLKIGEYQKGQDSEADQAIEKIGAIRQWLRQGTHETSD  427
            R +LA Y+EVELL++IGEYQ+G D+++D+AI+    I   LRQ+ +E  +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

80) PADK2_17215 in NC_018080


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  363 bits (1363),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 225/410 (55%), Positives = 311/410 (76%), Gaps = 11/410 (2%)

Query  19   CRPIQIRGRVTQVTGTLLKAVVPGVRIGELCQLRNPDQSLALLAEVIGFQQHQALLTPLG  78
            CR    +GR+ +V++TLL+A +PGV +GELC ++  ++    LAEV+G++  +ALL+P+ 
Sbjct  20   CR----WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFT  71

Query  79   EMLGVSSNTEVSPTGGMHRVAVGEHLLGQVLDGLGRPFDGSPPAEPAAWYPVYRDAPQP-  137
               G+    +V +    H+V+VGE LLG+V+DG+GRP+DG   +E   W   Y   P P 
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPA  129

Query  138  MSRRLIERPLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTVLALV  197
            M R+ I +PL  G+RAID++ TCGEGQR+GIF+A+G GKSTLLA L   ++ D  VL L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  198  GERGREVREFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLL  257
            GERGREVREFI+  L+E+  +R V+VVATSDRPA+ER +A FVAT+IAE+FRD+G+RV+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  258  LMDSLTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVE  317
            L DSLTR+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G +E+GSITA+YTVLVE
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  318  GDDMSEPVADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRL  377
            GDDM+EP+ADE RS+LDGHIVLSR+LA   HYPAIDVL ++SRV   +  +++R+ A+ L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  378  REWLAKYEEVELLLKIGEYQKGQDSEADQAIEKIGAIRQWLRQGTHETSD  427
            R +LA Y+EVELL++IGEYQ+G D+++D+AI+    I   LRQ+ +E  +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

81) pscN in NC_008463


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  363 bits (1363),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 225/410 (55%), Positives = 311/410 (76%), Gaps = 11/410 (2%)

Query  19   CRPIQIRGRVTQVTGTLLKAVVPGVRIGELCQLRNPDQSLALLAEVIGFQQHQALLTPLG  78
            CR    +GR+ +V++TLL+A +PGV +GELC ++  ++    LAEV+G++  +ALL+P+ 
Sbjct  20   CR----WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFT  71

Query  79   EMLGVSSNTEVSPTGGMHRVAVGEHLLGQVLDGLGRPFDGSPPAEPAAWYPVYRDAPQP-  137
               G+    +V +    H+V+VGE LLG+V+DG+GRP+DG   +E   W   Y   P P 
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPA  129

Query  138  MSRRLIERPLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTVLALV  197
            M R+ I +PL  G+RAID++ TCGEGQR+GIF+A+G GKSTLLA L   ++ D  VL L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  198  GERGREVREFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLL  257
            GERGREVREFI+  L+E+  +R V+VVATSDRPA+ER +A FVAT+IAE+FRD+G+RV+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  258  LMDSLTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVE  317
            L DSLTR+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G +E+GSITA+YTVLVE
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  318  GDDMSEPVADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRL  377
            GDDM+EP+ADE RS+LDGHIVLSR+LA   HYPAIDVL ++SRV   +  +++R+ A+ L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  378  REWLAKYEEVELLLKIGEYQKGQDSEADQAIEKIGAIRQWLRQGTHETSD  427
            R +LA Y+EVELL++IGEYQ+G D+++D+AI+    I   LRQ+ +E  +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

82) CV_2603 in NC_005085


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  361 bits (1356),  Expect = 6e-101, Method: Compositional matrix adjust.
 Identities = 230/414 (56%), Positives = 315/414 (77%), Gaps = 4/414 (0%)

Query  9    IENTLRERLTLAPAPPGQRSGVELFGRVTEIGPTLLKASLPGASLSELCRLEPSGIEAEV  68
            + N L +RL L  +PP+   G    GR+ ++++TLL+A LPG  ++ELC + P+   AEV
Sbjct  1    MKNELMQRLRLKYPPPD---GYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEV  57

Query  69   VAVTGDHVMLSPFKEPLGVTIGSRVRPSGSPHQLRLGDFLLGRVVDGLGRPLDGDELPAD  128
            V++ G   +LSPF    G+  G +V +    HQ+ +G+ LLGRV+DG+GRPLDG ELP  
Sbjct  58   VGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV  117

Query  129  SELRSLDGPAPNPLTRQLIDTPLPLGVRAIDGLLTCGMGQRIGIFAAAGGGKSTLLGMIC  188
               +  D+ +P ++ RQ I  PL  G+RAID++ TCG GQR+GIF+A+G GKSTLL+M+C
Sbjct  118  C-WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC  176

Query  189  DGSLADVIVLALIGERGREVREFLEHTLSEEARSRSIVVVSTSDRPALERLKAAYTATAI  248
            +++ AD  VL LIGERGREVREF++ TLSEE+R R ++VV+TSDRPALER++A + AT+I
Sbjct  177  NAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTI  236

Query  249  AEHFRDQGKNVLLMMDSLTRFARASREIGLaagepaaaggyppSFFARLPRLLERAGPAE  308
            AE FRD+GK V+L+ DSLTR+ARA+REI+LAAGE A +G YPP+ F+ LPRLLER+G +E
Sbjct  237  AEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE  296

Query  309  TGSITGIYTVLVEGDNLNEPVADEVRSILDGHIVLSRKLAETNHYPAIDIGASVSRIMGQ  368
             GSIT++YTVLVEGD++NEP+ADEVRS+LDGHIVLSR+LAE  HYPAID+ A++SR+   
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  369  IVSAEHRQQAGKLRRLMAAYKEIELLVRVGEYQPGQDAEADEALERKDAIRQFL  422
            + S EHRQ A+ LRR +A Y+E+ELL+R+GEYQ G D+++D A++    I  FL
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

83) ascN in NC_009350


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  359 bits (1347),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 229/410 (56%), Positives = 306/410 (75%), Gaps = 11/410 (2%)

Query  24   CRLIQIRGRVTQVTGTLLKAVVPGVRIGELCHLRNPDNTLSLQAEVIGFAQHQALLTPLG  83
            CR    +GR+ +V++TLL+A +PGV +GELC ++ P++ L   AEV+G+   +ALL+P+ 
Sbjct  20   CR----WGRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFT  71

Query  84   EMFGISSNTEVSPTGAMHQVGVGEHLLGQVLDGLGNPFGGGHLPEPEAWYPVYRDAPAP-  142
               G+    +V +    HQV VGE LLG+V+DG+G P++G +LPE   W   Y   P+P 
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV-CW-KDYDAMPPPA  129

Query  143  MSRKRIAEPISLGIRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALI  202
            M R+ I++P+  GIRAID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LI
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  203  GERGREVREFIEADLGEEGLKKAVLVVATSDRPAMERAKAGFVATSIAEYFRDQGKRVLL  262
            GERGREVREFI+  L+EE  K+ V+VVATSDRPA+ER +A FVAT+IAE+FRD+GKRV+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  263  LMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDKGSITALYTVLVE  322
            L DS+TR+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G ++KGSITA+YTVLVE
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  323  GDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIIEPEHQAQAGRL  382
            GDDM EP+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   +   EH+  A+ L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  383  RSWLAKYEEVELLLQIGEYQKGQDKVADEAIARIETIRQWLRQGTHEPSS  432
            R +LA Y+EVELL++IGEYQ+G D  +D AI     I   LRQ+ +E  +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

84) Y11_p0781 in NC_017565


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  358 bits (1346),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 228/403 (57%), Positives = 305/403 (76%), Gaps = 7/403 (1%)

Query  24   RGRVTQVTGTLLKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLIPLGEMYGIS  83
            +GR+ +V++TLL+A +PGV +GELC ++ P++ L   AEV+G+   +ALL P+    G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPTGTMHQVGVGEHLLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAP-MSRKLI  142
               +V +    HQV VGE LLG+V+DG+G+P+DG +LPE   W   Y+  P+P M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPAMVRQPI  135

Query  143  TTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGRE  202
            T PL  GIR ID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE  ++ V+VVATSDRP++ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G + KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   + S EH+  A+ LRR LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLLQIGEYQKGQDKEADQAIERIGAIRGWLCQGTHELS  425
            Y+EVELL++IGEYQ+G D ++D+AI+    I   L Q+ +E+ 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

85) YPDSF_3977 in NC_009377


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  358 bits (1346),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 229/403 (57%), Positives = 305/403 (76%), Gaps = 7/403 (1%)

Query  24   RGRVTQVTGTLLKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLIPLGEMYGIS  83
            +GR+ +V++TLL+A +PGV +GELC ++ P++ L   AEV+G+   +ALL P+    G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPTGTMHQVGVGEHLLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAP-MSRKLI  142
               +V +    HQV VGE LLG+V+DG+G+P+DG +LPE   W   Y+  P+P M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPAMVRQPI  135

Query  143  TTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGRE  202
            T PL  GIR ID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIESDLGEEGLRKAVLVVATSDRPSLERAKAGFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE  ++ V+VVATSDRP+LER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G + KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   + S EH+  A+ LRR LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELS  425
            Y+EVELL++IGEYQ+G D ++D+AI+    I   L Q+ +E+ 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

86) yscN in NC_016642


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  358 bits (1345),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 222/422 (53%), Positives = 308/422 (73%), Gaps = 6/422 (1%)

Query  37   EPYPLTGRVRKVVGTLIHAVVPKVEIGEIAELYTRSTGRRLMAEVVGFHDDEALLSPIGE  96
            + Y   GR++ V +TL++A +P V +GE   L     G  L AEVVG+++  ALLSP+  
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGE---LCCIKPGEEL-AEVVGINGSKALLSPFTS  72

Query  97   LYGVGPDTEVRPTGHVQTVAVGEGLLGRVLDGMGNFIDGVDQEFVPETHYPVNQDPPDPM  156
              G+  + +V +  + + V+VGE+LLGRV+DG G  +DG +   V   +Y  +  PP +M
Sbjct  73   TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAM  130

Query  157  QRQIIDKPLPMGVRAIDGMLTTGEGQRMGIFASAGGGKSTLMAMLVKGAAVDVTVLALIG  216
             RQ I +PL  G+RAID++ T GEGQR+GIF+++G GKSTL+AML +++  D  VL LIG
Sbjct  131  VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG  190

Query  217  ERGREVREFIEHDLGPEGMKKSVVVVATSDKSSLERSKAAFVATSIAEYFRDQGKRVLLL  276
            ERGREVREFI+  L+ E  K+ V+VVATSD+++LER +A FVAT+IAE+FRD+GKRV+LL
Sbjct  191  ERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLL  250

Query  277  MDSVTRFARAQREIGLAVGEPPTRRGFPPSVFATLPRLMERAGMNDKGSITAFYTVLMEG  336
             DS+TR+ARA REI+LA GE +    +PP+VF++LPRL+ER+GM +KGSITAFYTVL+EG
Sbjct  251  ADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEG  310

Query  337  DDMNEPVSDETRSILDGHIVLSRKLAAANHYPAIDILNSKSRVMTAVTSPEHREMSGKVN  396
            DDMNEP++DE RS+LDGHIVLSR+LA   HYPAID+L + SRV   VTS EHR++++ + 
Sbjct  311  DDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILR  370

Query  397  SLLAKYEEVELLVQIGEYQKGADSEADLAIAKNKPIKEFLQQRTDEFDGFDVALGKLKST  456
              LA Y+EVELL++IGEYQ+G D+++D AI     I  FL+Q  DE  G ++ + KL   
Sbjct  371  RRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

Query  457  VA  458
            ++
Sbjct  431  LT  432

87) yscN in NC_008791


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  358 bits (1343),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 228/403 (57%), Positives = 305/403 (76%), Gaps = 7/403 (1%)

Query  24   RGRVTQVTGTLLKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLIPLGEMYGIS  83
            +GR+ +V++TLL+A +PGV +GELC ++ P++ L   AEV+G+   +ALL P+    G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPTGTMHQVGVGEHLLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAP-MSRKLI  142
               +V +    HQV VGE LLG+V+DG+G+P+DG +LPE   W   Y+  P+P M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPAMVRQPI  135

Query  143  TTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGRE  202
            T PL  GIR ID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE  ++ V+VVATSDRP++ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G + KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   + S EH+  A+ LRR LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELS  425
            Y+EVELL++IGEYQ+G D ++D+AI+    I   L Q+ +E+ 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

88) yscN in NC_010157


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  358 bits (1343),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 228/403 (57%), Positives = 305/403 (76%), Gaps = 7/403 (1%)

Query  24   RGRVTQVTGTLLKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLIPLGEMYGIS  83
            +GR+ +V++TLL+A +PGV +GELC ++ P++ L   AEV+G+   +ALL P+    G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPTGTMHQVGVGEHLLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAP-MSRKLI  142
               +V +    HQV VGE LLG+V+DG+G+P+DG +LPE   W   Y+  P+P M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPAMVRQPI  135

Query  143  TTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGRE  202
            T PL  GIR ID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE  ++ V+VVATSDRP++ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G + KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   + S EH+  A+ LRR LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELS  425
            Y+EVELL++IGEYQ+G D ++D+AI+    I   L Q+ +E+ 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

89) YPA_CD0022 in NC_008122


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  358 bits (1343),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 228/403 (57%), Positives = 305/403 (76%), Gaps = 7/403 (1%)

Query  24   RGRVTQVTGTLLKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLIPLGEMYGIS  83
            +GR+ +V++TLL+A +PGV +GELC ++ P++ L   AEV+G+   +ALL P+    G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPTGTMHQVGVGEHLLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAP-MSRKLI  142
               +V +    HQV VGE LLG+V+DG+G+P+DG +LPE   W   Y+  P+P M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPAMVRQPI  135

Query  143  TTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGRE  202
            T PL  GIR ID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE  ++ V+VVATSDRP++ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G + KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   + S EH+  A+ LRR LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELS  425
            Y+EVELL++IGEYQ+G D ++D+AI+    I   L Q+ +E+ 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

90) yscN in NC_005813


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  358 bits (1343),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 228/403 (57%), Positives = 305/403 (76%), Gaps = 7/403 (1%)

Query  24   RGRVTQVTGTLLKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLIPLGEMYGIS  83
            +GR+ +V++TLL+A +PGV +GELC ++ P++ L   AEV+G+   +ALL P+    G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPTGTMHQVGVGEHLLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAP-MSRKLI  142
               +V +    HQV VGE LLG+V+DG+G+P+DG +LPE   W   Y+  P+P M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPAMVRQPI  135

Query  143  TTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGRE  202
            T PL  GIR ID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE  ++ V+VVATSDRP++ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G + KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   + S EH+  A+ LRR LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELS  425
            Y+EVELL++IGEYQ+G D ++D+AI+    I   L Q+ +E+ 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

91) yscN in NC_003131


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  358 bits (1343),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 228/403 (57%), Positives = 305/403 (76%), Gaps = 7/403 (1%)

Query  24   RGRVTQVTGTLLKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLIPLGEMYGIS  83
            +GR+ +V++TLL+A +PGV +GELC ++ P++ L   AEV+G+   +ALL P+    G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPTGTMHQVGVGEHLLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAP-MSRKLI  142
               +V +    HQV VGE LLG+V+DG+G+P+DG +LPE   W   Y+  P+P M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPAMVRQPI  135

Query  143  TTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGRE  202
            T PL  GIR ID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE  ++ V+VVATSDRP++ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G + KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   + S EH+  A+ LRR LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELS  425
            Y+EVELL++IGEYQ+G D ++D+AI+    I   L Q+ +E+ 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

92) pYV0067 in NC_006153


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  358 bits (1343),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 228/403 (57%), Positives = 305/403 (76%), Gaps = 7/403 (1%)

Query  24   RGRVTQVTGTLLKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLIPLGEMYGIS  83
            +GR+ +V++TLL+A +PGV +GELC ++ P++ L   AEV+G+   +ALL P+    G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPTGTMHQVGVGEHLLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAP-MSRKLI  142
               +V +    HQV VGE LLG+V+DG+G+P+DG +LPE   W   Y+  P+P M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPAMVRQPI  135

Query  143  TTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGRE  202
            T PL  GIR ID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE  ++ V+VVATSDRP++ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G + KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   + S EH+  A+ LRR LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELS  425
            Y+EVELL++IGEYQ+G D ++D+AI+    I   L Q+ +E+ 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

93) YPTS_4285 in NC_010635


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  358 bits (1343),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 228/403 (57%), Positives = 305/403 (76%), Gaps = 7/403 (1%)

Query  24   RGRVTQVTGTLLKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLIPLGEMYGIS  83
            +GR+ +V++TLL+A +PGV +GELC ++ P++ L   AEV+G+   +ALL P+    G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPTGTMHQVGVGEHLLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAP-MSRKLI  142
               +V +    HQV VGE LLG+V+DG+G+P+DG +LPE   W   Y+  P+P M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPAMVRQPI  135

Query  143  TTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGRE  202
            T PL  GIR ID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE  ++ V+VVATSDRP++ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALPRL+ER+G + KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   + S EH+  A+ LRR LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELS  425
            Y+EVELL++IGEYQ+G D ++D+AI+    I   L Q+ +E+ 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

94) YE105_P0022 in NC_015475


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  351 bits (1320),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 225/397 (57%), Positives = 300/397 (76%), Gaps = 7/397 (1%)

Query  1    MTGTLLKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLIPLGEMYGISSNTEVS  60
            +++TLL+A +PGV +GELC ++ P++ L   AEV+G+   +ALL P+    G+    +V 
Sbjct  28   VSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVM  83

Query  61   PTGTMHQVGVGEHLLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAP-MSRKLITTPLSL  119
            +    HQV VGE LLG+V+DG+G+P+DG +LPE   W   Y+  P+P M R+ IT PL  
Sbjct  84   ALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPAMVRQPITQPLMT  141

Query  120  GIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIE  179
            GIR ID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LIGERGREVREFI+
Sbjct  142  GIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFID  201

Query  180  SDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQ  239
              L+EE  ++ V+VVATSDRP++ER +A FVAT+IAE+FRD+GKRV+LL DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTEPVADET  299
            REI+LAAGE +    YPP+VF+ALPRL+ER+G + KGSITA+YTVLVEGDDM EP+ADE 
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  RSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAKYEEVEL  359
            RS+LDGHI+LSR+LA   HYPAIDVL + SRV   + S EH+  A+ LRR LA Y+EVEL
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LLQIGEYQKGQDKEADQAIERIGAIRGWLCQGTHELS  396
            L++IGEYQ+G D ++D+AI+    I   L Q+ +E+ 
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

95) yscN in NC_017153


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  351 bits (1317),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 225/397 (57%), Positives = 300/397 (76%), Gaps = 7/397 (1%)

Query  1    MTGTLLKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLIPLGEMYGISSNTEVS  60
            +++TLL+A +PGV +GELC ++ P++ L   AEV+G+   +ALL P+    G+    +V 
Sbjct  28   VSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVM  83

Query  61   PTGTMHQVGVGEHLLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAP-MSRKLITTPLSL  119
            +    HQV VGE LLG+V+DG+G+P+DG +LPE   W   Y+  P+P M R+ IT PL  
Sbjct  84   ALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPAMVRQPITQPLMT  141

Query  120  GIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIE  179
            GIR ID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LIGERGREVREFI+
Sbjct  142  GIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFID  201

Query  180  SDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQ  239
              L+EE  ++ V+VVATSDRP++ER +A FVAT+IAE+FRD+GKRV+LL DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTEPVADET  299
            REI+LAAGE +    YPP+VF+ALPRL+ER+G + KGSITA+YTVLVEGDDM EP+ADE 
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  RSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAKYEEVEL  359
            RS+LDGHI+LSR+LA   HYPAIDVL + SRV   + S EH+  A+ LRR LA Y+EVEL
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELS  396
            L++IGEYQ+G D ++D+AI+    I   L Q+ +E+ 
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

96) yscN in NC_017157


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  351 bits (1317),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 225/397 (57%), Positives = 300/397 (76%), Gaps = 7/397 (1%)

Query  1    MTGTLLKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLIPLGEMYGISSNTEVS  60
            +++TLL+A +PGV +GELC ++ P++ L   AEV+G+   +ALL P+    G+    +V 
Sbjct  28   VSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVM  83

Query  61   PTGTMHQVGVGEHLLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAP-MSRKLITTPLSL  119
            +    HQV VGE LLG+V+DG+G+P+DG +LPE   W   Y+  P+P M R+ IT PL  
Sbjct  84   ALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPAMVRQPITQPLMT  141

Query  120  GIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIE  179
            GIR ID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LIGERGREVREFI+
Sbjct  142  GIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFID  201

Query  180  SDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQ  239
              L+EE  ++ V+VVATSDRP++ER +A FVAT+IAE+FRD+GKRV+LL DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTEPVADET  299
            REI+LAAGE +    YPP+VF+ALPRL+ER+G + KGSITA+YTVLVEGDDM EP+ADE 
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  RSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAKYEEVEL  359
            RS+LDGHI+LSR+LA   HYPAIDVL + SRV   + S EH+  A+ LRR LA Y+EVEL
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELS  396
            L++IGEYQ+G D ++D+AI+    I   L Q+ +E+ 
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

97) yscN in NC_014017


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  351 bits (1317),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 225/397 (57%), Positives = 300/397 (76%), Gaps = 7/397 (1%)

Query  1    MTGTLLKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLIPLGEMYGISSNTEVS  60
            +++TLL+A +PGV +GELC ++ P++ L   AEV+G+   +ALL P+    G+    +V 
Sbjct  28   VSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVM  83

Query  61   PTGTMHQVGVGEHLLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAP-MSRKLITTPLSL  119
            +    HQV VGE LLG+V+DG+G+P+DG +LPE   W   Y+  P+P M R+ IT PL  
Sbjct  84   ALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCW-KDYDAMPPPAMVRQPITQPLMT  141

Query  120  GIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIE  179
            GIR ID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LIGERGREVREFI+
Sbjct  142  GIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFID  201

Query  180  SDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQ  239
              L+EE  ++ V+VVATSDRP++ER +A FVAT+IAE+FRD+GKRV+LL DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTEPVADET  299
            REI+LAAGE +    YPP+VF+ALPRL+ER+G + KGSITA+YTVLVEGDDM EP+ADE 
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  RSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAKYEEVEL  359
            RS+LDGHI+LSR+LA   HYPAIDVL + SRV   + S EH+  A+ LRR LA Y+EVEL
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELS  396
            L++IGEYQ+G D ++D+AI+    I   L Q+ +E+ 
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

98) VEA_003366 in NC_013456


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  349 bits (1309),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 224/418 (54%), Positives = 310/418 (75%), Gaps = 7/418 (1%)

Query  24   RGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLAEVVGFQQHHALLTPLGNMFGIS  83
            +GR+ +V++T+++A +PGV +GELC ++  ++    LAEVVG++   ALL+P+ +  G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPMGKMHEvgvgdqllgttldglgRPFDGTQSQEPSAWYPVYRDAPPP-MQRKLI  142
               +V ++ + H+V VG+ LLG  +DG+GRP+DG +  E   W   Y   PPP M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-W-KDYDAMPPPAMVRQPI  135

Query  143  EKPISLGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSADVDVTVLALIGERGRE  202
             +P+  G+R+ID++ TCGEGQR+GIF+A+G GKSTLLA L  ++D D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIEHDLGEEGMAKSVLVVATSDRPAMERAKAAFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE   + V+VVATSDRPA+ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALP+L+ER+G ++KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVEPDHQASAAHLREMLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   +   +H+  AA LR  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLLKIGEYQHGADSRADMAIAQSDDIRAFLRQGTHEPSDLDGAIAQLKGMANQ  440
            Y+EVELL++IGEYQ+G D+ +D AI    DI +FLRQ+ +E  + +  I +L  +  +
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

99) N646_0736 in NC_022349


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  347 bits (1303),  Expect = 9e-97, Method: Compositional matrix adjust.
 Identities = 223/412 (55%), Positives = 308/412 (75%), Gaps = 7/412 (1%)

Query  24   RGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLAEVVGFQQHHALLTPLGNMFGIS  83
            +GR+ +V++T+++A +PGV +GELC ++  ++    LAEVVG++   ALL+P+ +  G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  84   SNTEVSPMGKMHEvgvgdhllgttldglgRPFDGTQSQEPSAWYPVYRDAPPP-MQRKLI  142
               +V ++ + H+V VG+ LLG  +DG+GRP+DG +  E   W   Y   PPP M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-W-KDYDAMPPPAMVRQPI  135

Query  143  EKPISLGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSAEVDVTVLALIGERGRE  202
             +P+  G+R+ID++ TCGEGQR+GIF+A+G GKSTLLA L  +++ D  VL LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIEHDLGEEGMAKSVLVVATSDRPAMERAKAAFVATSIAEYFRDQGKRVLLLMDSVT  262
            VREFI+  L+EE   + V+VVATSDRPA+ER +A FVAT+IAE+FRD+GKRV+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSITALYTVLVEGDDMTE  322
            R+ARA REI+LAAGE +    YPP+VF+ALP+L+ER+G ++KGSITA+YTVLVEGDDM E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVEPDHQASAAHIREMLAK  382
            P+ADE RS+LDGHI+LSR+LA   HYPAIDVL + SRV   +   +H+  AA +R  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YEEVELLIKIGEYQHGADSRADLAIAQSDDIRAFLRQGTHEPSDLDGAIAQL  434
            Y+EVELLI+IGEYQ+G D+ +D AI    DI +FLRQ+ +E  + +  I +L
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

100) fliI in NC_018665


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  345 bits (1295),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 200/400 (50%), Positives = 297/400 (75%), Gaps = 4/400 (1%)

Query  22   HSGKVVQVIGLMIESRGPTAVAIGERCLIRIHRGQEIEAEVVGFREGHVLLMPYGETTAI  81
            + G++ +V + +++++ P +V +GE C I+   G+E+ AEVVG+  +  LL P+  T+++
Sbjct  21   RWGRIQDVSATLLNAWLP-GVFMGELCCIK--PGEEL-AEVVGINGSKALLSPFTSTAGL  76

Query  82   APGSIVIATGKPLHVPVGDDLIGKVLDGLGRSLDGESLTHLRTTSIVRKPPSPLDRPRID  141
              G  V+A  +  +VPVG+ L+G+V+DG+GR+LDG  L ++        PP+++ R  I 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPIT  136

Query  142  QVLSTGIRAIDGLLTVGQGQRVGLFAGSGVGKSTLLGMIAKRSTADINVIALIGERGREV  201
            Q L TGIRAID++ T G+GQRVG+F+++GVGKSTLL+M+ + + AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  202  KEFIEAELGEEGMSRSIIVVATSDQPPLVRLKGAYTATAIAEYFRDQGKNVVLMMDSVTR  261
            +EFI+  L+EE   R +IVVATSD+P+L R+++ + AT+IAE+FRD+GK VVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  262  FAMAQREIGLATGEPPASKGYTPSVFALLPQLLERSGKTTEGSITAFYTVLVDGDDMNEP  321
            +A A REI+LA+GE + S  Y P+VF+ LP+LLER+G    GSITAFYTVLV+GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  322  IADAVRGILDGHFVLDRNLANKGQYPAIHVLRSISRVMNQITSTEHKDSAITFRQLLSTY  381
            +AD VR++LDGH+VL R LA++G+YPAI+VL ++SRV   +TS EH++ A  +R+ L+ Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  LDAEDLINIGAYKSGTNPDIDRAVEKYPELIDFLKQRVEE  421
             + E LI IG Y+ G + D D+A++ YP++  FL+Q  +E
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

101) Desde_3522 in NC_018017


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  344 bits (1292),  Expect = 6e-96, Method: Compositional matrix adjust.
 Identities = 207/414 (50%), Positives = 305/414 (74%), Gaps = 7/414 (1%)

Query  21   GRVAKIVGLMIESDGPRVSVGEYCKIHTRQGKEIPAEVVGFRNSTTLLMPLAELEGIAPG  80
            GR+  + + ++++  P V +GE C I  + G E+ AEVVG+  S +LL P++   G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   DRVVPQQHKLEVGVGQALLGRILDGLGRPLDGR--PMVTHKDYPLQNSPPSAFLRPRIRD  138
            ++V++ +++ +V VG+ALLGR++DG+GRPLDGR  P V  KDY  +  PP+A +R  I +
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQ  137

Query  139  PLSVGVRTVDGMLTIGRGQRIGIFAGSGVGKSTLLGMMARNTTADVNVIALVGERGRELR  198
            PL  G+R++D++ T G GQR+GIF+++GVGKSTLL+M+     AD NV+ L+GERGRE+R
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  199  DFIEKDLGEEGLERSVLVVATSDQPALVRLKAAFTATAIAEYFRDQGQDVLLMMDSVTRF  258
            +FI+  L+EE   R V+VVATSD+PAL R++A F AT+IAE+FRD+G+ V+L+ DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  259  AMAQREVGLTTGEPPATRGYPPSVFALLPKLLERSGMSEVGSITGIYTVLVDGDDHNEPI  318
            A A RE++L++GE + +  YPP+VF+ LP+LLER+GM+E GSIT++YTVLV+GDD NEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  319  ADTVRGILDGHIVLTRELAMQNHYPAIDTLQSVSRVMNDIISPEHKELAGKLREHLAIYH  378
            AD VR++LDGHIVL+R LA + HYPAID L ++SRV   + S EH++LA+ LR +LA+Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  379  DAKDLIDIGAYVAGSNPRIDAAIQHIEGINGFLRQDVEEKVSFDEMIQQLHQAL  432
            +   LI IG Y  G +   D AI+   +I  FLRQ  +E  + + +I++LHQ L
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

102) yscN in NC_015717


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  344 bits (1290),  Expect = 9e-96, Method: Compositional matrix adjust.
 Identities = 209/419 (50%), Positives = 302/419 (73%), Gaps = 9/419 (2%)

Query  31   RGRVLQVLGTIIKATVPGARIGDLCILHNPSDGSELPAEVVGLTRDSAILTPLGDLGGVS  90
            +GR+ +V +T+++A +PG  +G+LC +     G EL AEVVG+    A+L+P+   +G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKP---GEEL-AEVVGINGSKALLSPFTSTAGLH  77

Query  91   TLTEVLPTGKPHMAPAGRALLGRVLDGMGQPLDIAERGPLRPDAYVSVYADAPDP-LTRR  149
               +V++  + H  P G ALLGRV+DG G+PLD    G   P+     Y   P P + R+
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD----GRELPEVCWKDYDAMPPPAMVRQ  133

Query  150  VIDTPMPLGVRALDGMLTCGEGQRMGIFAAAGGGKSTLMSMLVRGAAVDVTVMALIGERG  209
             I  P+  G+RA+D++ TCGEGQR+GIF+A+G GKSTL++ML  ++  D  V+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  210  REVREFIERDLGPEGREKSVVVVATSDRSSMERAKAAYVATAIAEWFRNQGMRVLFLMDS  269
            REVREFI+  L+ E R + V+VVATSDR+++ER +A +VAT+IAE FR++G RV++L DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  270  VTRFARAQREIGLAAGEPPTRRGFPPSVFATLPKLMERVGNNDKGSITAFYTVLVEGDDM  329
            +TR+ARA REI+LAAGE +    +PP+VF++LP+L+ER G  +KGSITAFYTVLVEGDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  330  SEPIADETRSILDGHIVLSRALSAANHFPAIDVLASASRVMGAIASSEHRALAGRIRTLM  389
            +EP+ADE RS+LDGHIVLSR L+   H+PAIDVLA+ SRV   ++S EHR LA+ +R  +
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  390  AKYNEVELLVRIGEYKPGSDKVADEAVKKIEHIRSFLKQNAQDPVGFNDVLKQMAEALA  448
            A Y+EVELL+RIGEY+ G D  +D A+    +I +FL+Q+ ++  G + ++ ++ + L+
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

103) Exig_1876 in NC_010556


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  343 bits (1289),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 198/400 (50%), Positives = 298/400 (75%), Gaps = 4/400 (1%)

Query  22   HSGKVVQVIGLMIESRGPTAVAIGERCLIRIHRGDEIEAEVVGFREGHVLLMPYGETTAI  81
            + G++ +V + +++++ P +V +GE C I+   G+E+ AEVVG+  +  LL P+  T+++
Sbjct  21   RWGRIQDVSATLLNAWLP-GVFMGELCCIK--PGEEL-AEVVGINGSKALLSPFTSTAGL  76

Query  82   APGSIVIATGKPLHVPVGDDLIGTVLDGLGRSLDGKSLAHLRTTSIVRKPPSPLDRPRID  141
              G  V+A  +  +VPVG+ L+G V+DG+GR+LDG+ L+++        PP+++ R  I 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPIT  136

Query  142  EVLSTGIRAIDGLLTVGQGQRVGLFAGSGVGKSTLLGMIAKRSMADINVIALIGERGREV  201
            + L TGIRAID++ T G+GQRVG+F+++GVGKSTLL+M+ + + AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  202  KEFIEAELGEEGMSRSIIVVATSDQPPLVRLKGAYTATAIAEYFRDQGKNVVLMMDSVTR  261
            +EFI+  L+EE   R +IVVATSD+P+L R+++ + AT+IAE+FRD+GK VVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  262  FAMAQREIGLATGEPPASKGYTPSVFALLPQLLERSGKTTEGSITAFYTVLVDGDDMNEP  321
            +A A REI+LA+GE + S  Y P+VF+ LP+LLER+G    GSITAFYTVLV+GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  322  IADAVRGILDGHFVLDRNLANKGQYPAIHILRSISRVMNQITSTEHKDSAITFRQLLSTY  381
            +AD VR++LDGH+VL R LA++G+YPAI++L ++SRV   +TS EH++ A  +R+ L+ Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  LDAEDLINIGAYKSGTNPDIDRAVEKYPELIGFLKQRVEE  421
             + E LI IG Y+ G + D D+A++ YP++  FL+Q  +E
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

104) Clos_1482 in NC_009922


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  343 bits (1286),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 202/401 (51%), Positives = 290/401 (73%), Gaps = 7/401 (1%)

Query  38   PAVKLGEMCKIYSLKGTEPILSEVVGFKEKKVLLMPLGEMEGIGPGSKVEALGITMQVSV  97
            P+V +GE+C    +K  E  L+EVVG++  K LL P+    G+  G +V AL    QV+V
Sbjct  38   PGVFMGELC---CIKPGEE-LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPV  93

Query  98   GEELLGRVLDGLGNPIDDKELLN-TNKTYPVMAAPPNPLKRTKINEPLALGVKTLDGLLT  156
            GE LLGRV+DG+G P+D++EL +   K Y  M  PP ++ R  I +PL  G++++D++ T
Sbjct  94   GEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPITQPLMTGIRAIDSVAT  151

Query  157  CGNGQRIGIFAGSGVGKSTLLGMIARNTQADINVIALIGERGREVREFIENDLQEEGLKR  216
            CG+GQR+GIF+++GVGKSTLL+M+    +AD NV+ LIGERGREVREFI+  L EE  KR
Sbjct  152  CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKR  211

Query  217  SVVIVATSDQPALIRKKGALLATAVAEYFRDQGKNVILMMDSLTRFSMAQREVGLAVGEP  276
             V++VATSD+PAL R ++ ++AT++AE+FRD+GK V+L+ DSLTR++ A RE++LA GE 
Sbjct  212  CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGET  271

Query  277  PVSRGYTPSVFAELPKLLERSGTSDKGSITGLYTVLVDGDDMNEPIADTVRGILDGHIVL  336
            +VS  Y P+VF+ LP+LLER+G ++KGSIT++YTVLV+GDDMNEP+AD VR++LDGHIVL
Sbjct  272  AVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  337  SRKIANRNHYPAIDVLASVSRVMPNIVEKKHLLIANEIKELLSTYNSSEDLINIGAYIKG  396
            SR++A+R HYPAIDVLA++SRV P +    H  +A  ++  L+ Y+  E LI IG Y +G
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRG  391

Query  397  TNRRIDESINKIDSINSFLRQDVHDKTTLEDAITMMEEIVT  437
             +   D +I+    I +FLRQ  ++    E  I  +++I+T
Sbjct  392  VDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

105) fliI in NC_018704


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  342 bits (1283),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 200/419 (48%), Positives = 303/419 (73%), Gaps = 4/419 (0%)

Query  14   DPYIRYGKIDRVVGLMIESIGPEVKIGNVCYIHSDNGKKIMAEVVGFTGEKVLLMPYSQI  73
            D Y R G+I+ V + ++++  P V +G++C I +++    +AEVVG+ G K LL P++  
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTST  73

Query  74   NDIGPGSLVEATDQSLKIKVGKGLAGKVIDALGQPLDHSLLPLGLQGVDTDQMPPNPLDR  133
             ++  G  V A  +  ++ VG +L G+VID++G+PLD   LP  +   D D MPP ++ R
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPAMVR  132

Query  134  PRILEPIELGVKTLDTMLTVGKGQRVGIFAGSGVGKSTLLGMIARNSEADINVIGLIGER  193
              I +P+  G++++D++ T G GQRVGIF+++GVGKSTLL+M+   ++AD NV+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  194  GREVKEFIDKDLGEEGLKRSIVVVATSDQPALMRIKGAYTATAISEYFRDLGYNVNLMMD  253
            GREV+EFID  L+EE  KR ++VVATSD+PAL R+++ + AT+I+E+FRD G  V L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  254  SVTRVAMAQREVGLATGEPPTTKGYPPSVFAILPKLLERTGTSDKGTITAFYTVLVDGDD  313
            S+TR A A RE++LA+GE + +  YPP+VF+ LP+LLERTG ++KG+ITAFYTVLV+GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  314  LNDPIADATRGILDGHFVLDRRLAEQGQFPAINVLKSISRVMPQITTAEEQALANEMRLN  373
            +N+P+AD  R++LDGH+VL RRLAE+G++PAI+VL ++SRV P +T+ E++ LA  +R  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  374  ISTYEENYELIQIGAYKKGTNPIVDRAIQLHPKITAFLKQGIDEKCTRAEAIEKMKSVL  432
            ++ Y+E   LI+IG Y++G +   D+AI+  P I +FL+Q+ DE C     IEK+  +L
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

106) Amet_2722 in NC_009633


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  341 bits (1279),  Expect = 6e-95, Method: Compositional matrix adjust.
 Identities = 199/400 (50%), Positives = 290/400 (73%), Gaps = 7/400 (1%)

Query  23   GRVSQVIGLTIEAIGPAVKIGEVCKIFPLKGANPILAEAVGFREKKVLLMPLGEMEGIGP  82
            GR+ +V +  ++A  P+V +GE+C I   K ++  LAE VG+   K LL P+    G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEE-LAEVVGINGSKALLSPFTSTAGLHC  78

Query  83   GSKVEATGSTLSINVGEALLGRILDGLGNPIDGKG-PIEAHTAYPAMGSPVNPLLRKTIK  141
            G +V A      + VGEALLGR++DG+G P+DG+  P      Y AM +P  +++R+ I 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPP--AMVRQPIT  136

Query  142  EPLSLGVKAIDGLLSCGNGQRIGIFAGSGVGKSTLLGMIARNTRADINVIALIGERGREV  201
            +PL  G++AID++ +CG+GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  202  KEFIEKDLKEEGLKRSVVIVATSDQPALIRMKGALLATSVAEYFRDHNKNVMLLMDSLTR  261
            +EFI+  L EE  KR V++VATSD+PAL R+++ ++AT++AE+FRD+ K V+LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  262  FSMAQREVGLAIGEPPVTKGYTPSVFAILPKLLERSGTSDKGAITGLYTVLVDGDDMNEP  321
            ++ A RE++LA GE +V+  Y P+VF+ LP+LLER+G ++KG+IT++YTVLV+GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  322  IADAVRGILDGHIVLSRKIANRNHYPAIDVLASVSRVMDSIVGKEHIKLANELKEILSTY  381
            +AD VR++LDGHIVLSR++A+R HYPAIDVLA++SRV   + + EH +LA  L+  L+ Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  NDAEDLINIGAYVKGSNPKIDRAIEKIDAVNEFLIQTTDE  421
            ++ E LI IG Y +G +   D+AI+    +  FL Q+ DE
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

107) NT01EI_0957 in NC_012779


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  340 bits (1276),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 221/397 (56%), Positives = 294/397 (75%), Gaps = 4/397 (1%)

Query  28   GRLLTIGATLLRAHLPGVGLGEQCTL-PDGSPAEVVAIEGDQALLSPYQPPLGLANGMLV  86
            GR+  ++ATLL A LPGV +GE C + P+   AEVV+I+G +ALLSP+ +  GL  G  V
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQV  82

Query  87   TPLGAQACIGVSEALLGRVIDALGQPADGKPPAQATQWRSLDSPPPDPMQRAPIDTLLPM  146
             +L  +  + V+EALLGRVID++G+P DG+  ++   W+  D+ PP +M R PI   L  
Sbjct  83   MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-WKDYDAMPPPAMVRQPITQPLMT  141

Query  147  GVRAIDATLSVGVGQRLGIFSPAGCGKSTLLGMMATNSQADVVILALIGERGREVREFLE  206
            G+RAID+  + G GQR+GIFS++G GKSTLL+M+   ++AD  +L LIGERGREVREF++
Sbjct  142  GIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFID  201

Query  207  QIMSPELRARSVVILATSDRPALERIKAADTATVIAEYFRDRGHNVLLLVDSLTRYARAI  266
              +S E R R V+++ATSDRPALER++A   AT IAE+FRD G  V+LL DSLTRYARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  267  REIALAAGEPTVSGGYPPSLYARLPRLLERAGPAACGSITAFYTVLVE--QKSDPLAEEV  324
            REIALAAGE +VSG YPP++++ LPRLLER+G +  GSITAFYTVLVE  + ++PLA+EV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  325  RSLLDGHIVLSRRLAEASHYPAIDIMASISRVMSQIVTPQHRQAANRLRHLMATWQEIAL  384
            RSLLDGHIVLSRRLAE +HYPAID++A++SRV + + + +HRQ A  LR+ +A  QE+ L
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  385  LVRVGEYRAGQDTDADEAIARREAIDNLLCQKTDEHC  421
            L+R+GEY+ G DTD+D AI     I  +L Q  DE C
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

108) DSY2986 in NC_007907


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  340 bits (1276),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 202/414 (49%), Positives = 304/414 (74%), Gaps = 7/414 (1%)

Query  21   GRVAKIVGLMIESDGPRVSVGEYCRIHTQQGKEIPAEVVGFRNSTTLLMPLAELEGIAPG  80
            GR+  + + ++++  P V +GE C I  + G E+ AEVVG+  S +LL P++   G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   DRVVPQQHKLEVGVGQALLGRILDGLGRPLDGR--PMVTHRDYPLQNAPPSAFLRPRIRD  138
            ++V++ +++ +V VG+ALLGR++DG+GRPLDGR  P V  +DY  +  PP+A +R  I +
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQ  137

Query  139  PLSVGVRTVDGILTIGRGQRIGIFAGSGVGKSTLLGMMARNTTAGVNVIALVGERGRELR  198
            PL  G+R++D++ T G GQR+GIF+++GVGKSTLL+M+     A+ NV+ L+GERGRE+R
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  199  DFIEKDLGEEGLERSVLVVATSDQPALVRLKAAFTATAIAEYFRDQGQDVLLMMDSVTRF  258
            +FI+  L+EE   R V+VVATSD+PAL R++A F AT+IAE+FRD+G+ V+L+ DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  259  AMAQREVGLTTGEPPATRGYPPSVFAMLPKLLERSGMSEIGSITGIYTVLVDGDDHNEPI  318
            A A RE++L++GE + +  YPP+VF+ LP+LLER+GM+E GSIT++YTVLV+GDD NEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  319  ADTVRGILDGHIVLTRELAMQNHYPAIDTLQSVSRVMNDIIAPEHKELAGKLREHLAVYH  378
            AD VR++LDGHIVL+R LA + HYPAID L ++SRV   + + EH++LA+ LR +LA+Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  379  DAKDLIDIGAYVTGSNPRIDAAIRHIEGINGFLRQDVEEKVSFDQMLQQLQQAL  432
            +   LI IG Y  G +   D AI    +I  FLRQ  +E  + + ++++L+Q L
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

109) fliI in NC_009848


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  339 bits (1274),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 196/419 (47%), Positives = 294/419 (71%), Gaps = 6/419 (1%)

Query  6    LKETIETADPYKRFGKVNRVVGLMIESKGPESSIGDVCLIHKKGRKHDPIKAEVVGFRDE  65
            L+     +D Y R G+++ V + ++++  P   +G++C I     K +   AEVVG+ + 
Sbjct  9    LRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI-----KPGEELAEVVGINGS  63

Query  66   HILLMPYVEASNISPGSLVEATGESLKVKVGTGLIGEVVDAFGEPLDGSMLPKGLAPVST  125
              LL P+  ++ +  G  V A     +V VG +L+G V+D+FG PLDG  LP  +     
Sbjct  64   KALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDY  122

Query  126  DQSPPNPMDRPPIREKMGVGVRVIDSLLTVGTGQRIGIFAGSGVGKSTLMGMIAKQTEAD  185
            D  PP +M R PI + +  G+R IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD
Sbjct  123  DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD  182

Query  186  LNVIALVGERGREVREFIEKDLGTEGLKRSIVVVATSDQPALTRMKAAYTATAIAEYFRD  245
             NV+ L+GERGREVREFI+  L+ E  KR ++VVATSD+PAL R++A + AT+IAE+FRD
Sbjct  183  SNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRD  242

Query  246  RGKNVMFMMDSVTRVAMAQREIGLATGEPPTTKGYTPSVFAILPKLLERTGTNQLGSITA  305
             GK V+++ DS+TR A A REI+LA+GE + +  Y P+VF+ LP+LLERTG  + GSITA
Sbjct  243  NGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITA  302

Query  306  FYTVLVDGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNIASHDH  365
            FYTVLV+GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++SH+H
Sbjct  303  FYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEH  362

Query  366  KEAANRFRQLLSTYQNAEDLINIGAYKKGSSKDIDDAMQAYPHLISFLKQDVEEAVSIE  424
            ++ A  +R+ L+ YQ+ E LI IG Y++G   D D A+++YP++ +FL+Q  +E  + E
Sbjct  363  RQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

110) Dhaf_4147 in NC_011830


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  338 bits (1267),  Expect = 6e-94, Method: Compositional matrix adjust.
 Identities = 203/414 (50%), Positives = 303/414 (74%), Gaps = 7/414 (1%)

Query  21   GRVAKIVGLMIESDGPRVSVGEYCRIHTQQGKEIPAEVVGFRNSTTLLMPLAELEGIAPG  80
            GR+  + + ++++  P V +GE C I  + G E+ AEVVG+  S +LL P++   G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   DRVVPQQHKLEVGVGQALLGRILDGLGRPLDGR--PMVTQRDYPLQNAPPSAFLRPRIRD  138
            ++V++ +++ +V VG+ALLGR++DG+GRPLDGR  P V  +DY  +  PP+A +R  I +
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQ  137

Query  139  PLSVGVRTVDGILTIGRGQRIGIFAGSGVGKSTLLGMMARNTTAGVNVIALVGERGRELR  198
            PL  G+R++D++ T G GQR+GIF+++GVGKSTLL+M+     A+ NV+ L+GERGRE+R
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  199  DFIEKDLGEEGLERSVLVVATSDQPALVRLKAAFTATAIAEYFRDQGQDVLLMMDSVTRF  258
            +FI+  L+EE   R V+VVATSD+PAL R++A F AT+IAE+FRD+G+ V+L+ DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  259  AMAQREVGLTAGEPPATRGYPPSVFAMLPKLLERSGMSEIGSITGIYTVLVDGDDHNEPI  318
            A A RE++L+AGE + +  YPP+VF+ LP+LLER+GM+E GSIT++YTVLV+GDD NEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  319  ADTVRGILDGHIVLTRELAMQNHYPAIDTLQSVSRVMNDIIAPEHKELAGKLREHLAVYH  378
            AD VR++LDGHIVL+R LA + HYPAID L ++SRV   + + EH++LA+ LR +LA+Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  379  DAKDLIDIGAYVTGSNPRIDAAIRHIEGINGFLRQDVEEKVSFDQMLRQLQQAL  432
            +   LI IG Y  G +   D AI    +I  FLRQ  +E  + + ++ +L+Q L
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

111) sctN in NC_020127


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  338 bits (1267),  Expect = 6e-94, Method: Compositional matrix adjust.
 Identities = 205/418 (50%), Positives = 309/418 (74%), Gaps = 9/418 (2%)

Query  23   RGRVEQVIGTIIRAVVPGVKIGELCELRNPWDNWTLQAEVVGFVKHVALLTPLGDLQGIS  82
            +GR+++V +T++ A +PGV +GELC ++         AEVVG+    ALL+P+    G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPG----EELAEVVGINGSKALLSPFTSTAGLH  77

Query  83   PSTEVIPTGMVHAIPVGRELLGRVLNGLGEPIDGK--APLRLRTYYPVYADPPNPMLRRI  140
             + +V++    H +PVG  LLGRV++G+G P+DG+  + +  + Y ++   PP +M+R+ 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQP  134

Query  141  IEKPISLGLRVLDGILTCGEGQRMGIFAAAGGGKSTLLSSIIKGTTADVCILALIGERGR  200
            I +P+  G+R +D++ TCGEGQR+GIF+A+G GKSTLL+ + ++  AD  +L LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  201  EVREFIEHDLGAEGLKRSVLVVSTSDRSSMERLKSAYTATAIAEYFRDQGKKVLLLMDSV  260
            EVREFI+  L+ E  KR V+VV+TSDR+++ER+++ + AT+IAE+FRD+GK+V+LL DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  261  TRFGRALREIGLASGEPPTRRGFPPSVFSSLPKLMERAGNSDKGSITALYTVLVEGDDMT  320
            TR++RA REI+LA+GE +    +PP+VFS+LP+L+ER+G ++KGSITA+YTVLVEGDDM 
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  321  EPIADETRSILDGHIILSRKLAAANHYPAVDVLASVSRVMNAIVTKEHKENAGKLRKYLA  380
            EP+ADE RS+LDGHI+LSR+LA   HYPA+DVLA++SRV   + + EH++ A+ LR+ LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  KYAEVELLVQIGEYKAGNDPAADDAIKHNKGINAFLQQGLDEKSTFEQTLQALKKAVA  438
             Y EVELL++IGEY+ G D  +D AI    +I +FL+Q+ DE    E  ++ L + ++
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

112) sctN in NC_008011


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  338 bits (1267),  Expect = 6e-94, Method: Compositional matrix adjust.
 Identities = 205/418 (50%), Positives = 309/418 (74%), Gaps = 9/418 (2%)

Query  23   RGRVEQVIGTIIRAVVPGVKIGELCELRNPWDNWTLQAEVVGFVKHVALLTPLGDLQGIS  82
            +GR+++V +T++ A +PGV +GELC ++         AEVVG+    ALL+P+    G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPG----EELAEVVGINGSKALLSPFTSTAGLH  77

Query  83   PSTEVIPTGMVHAIPVGRELLGRVLNGLGEPIDGK--APLRLRTYYPVYADPPNPMLRRI  140
             + +V++    H +PVG  LLGRV++G+G P+DG+  + +  + Y ++   PP +M+R+ 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQP  134

Query  141  IEKPISLGLRVLDGILTCGEGQRMGIFAAAGGGKSTLLSSIIKGTTADVCILALIGERGR  200
            I +P+  G+R +D++ TCGEGQR+GIF+A+G GKSTLL+ + ++  AD  +L LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  201  EVREFIEHDLGAEGLKRSVLVVSTSDRSSMERLKSAYTATAIAEYFRDQGKKVLLLMDSV  260
            EVREFI+  L+ E  KR V+VV+TSDR+++ER+++ + AT+IAE+FRD+GK+V+LL DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  261  TRFGRALREIGLASGEPPTRRGFPPSVFSSLPKLMERAGNSDKGSITALYTVLVEGDDMT  320
            TR++RA REI+LA+GE +    +PP+VFS+LP+L+ER+G ++KGSITA+YTVLVEGDDM 
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  321  EPIADETRSILDGHIILSRKLAAANHYPAVDVLASVSRVMNAIVTKEHKENAGKLRKYLA  380
            EP+ADE RS+LDGHI+LSR+LA   HYPA+DVLA++SRV   + + EH++ A+ LR+ LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  KYAEVELLVQIGEYKAGNDPAADDAIKHNKGINAFLQQGLDEKSTFEQTLQALKKAVA  438
             Y EVELL++IGEY+ G D  +D AI    +I +FL+Q+ DE    E  ++ L + ++
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

113) Bcen2424_4847 in NC_008543


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  337 bits (1264),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 212/415 (52%), Positives = 305/415 (74%), Gaps = 4/415 (0%)

Query  42   GRVNHAVGQILNATGIRARLGEICELRTPNQPTLLAEVVGFSRQTTLLTPLGDVAGLSPE  101
            GR+++  + +LNA      +GE+C ++  ++   LAEVVG++   +LL+P+   AGL   
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  102  TTVVPSGREHVFPVGEGLFGRVLDGLGRPLDDRGPVTGAAWVSTQQDPPNPLARKMIDTP  161
              V++  R H  PVGE+L+GRV+DG+GRPLD+R  +    W   +  PP ++ R+ I  P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  162  FPTGVRVIDGLMTLGIGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVRE  221
            + TG+R ID++ T G GQRVGIF+++GVGKSTLL+M+  +++AD NV+ L+GERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  222  FIEHSLSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFA  281
            FI+ +LS E R R ++VV+TSDRPA+ERV++ +VAT+IAE FRD GKRV+LL DSLTR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  282  RAQREVGLASGEPPTRRSFPPSTFAVLPRLLERAGQGAHGSITALYTVLVEGDEESDPIA  341
            RA RE++LA+GE +    +PP+ F+ LPRLLER+G G  GSITA+YTVLVEGD+ ++P+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  342  EEVRSILDGHIVLSRKIALANRYPAIDVLASLSRVMPLVASRAHQHAAARVRELIAKYQE  401
            +EVRS+LDGHIVLSR++A   +YPAIDVLA+LSRV P+V+S+ H++ AA +R  +A YQE
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  402  IELLVQIGEYREGSDRLGDLALRARDAIGAFCAQASDEDVRFDALLAKLTKLAND  456
            +ELL++IGEY+ G D   D A+ +   I +F  Q+ DE    + L+ KL ++  +
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

114) bcscN in NC_011001


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  337 bits (1263),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 212/415 (52%), Positives = 305/415 (74%), Gaps = 4/415 (0%)

Query  41   GRVNHAVGQILNATGIRARLGEICELRTPNQPTLLAEVVGFSRQTTLLTPLGDVAGLSPE  100
            GR+++  + +LNA      +GE+C ++  ++   LAEVVG++   +LL+P+   AGL   
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  101  TTVVPSGREHVFPVGEGLFGRVLDGLGRPLDDRGPVTGAAWVSTQQDPPNPLARKMIDTP  160
              V++  R H  PVGE+L+GRV+DG+GRPLD+R  +    W   +  PP ++ R+ I  P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  161  FPTGVRVIDGLMTLGIGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVRE  220
            + TG+R ID++ T G GQRVGIF+++GVGKSTLL+M+  +++AD NV+ L+GERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  221  FIEHSLSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFA  280
            FI+ +LS E R R ++VV+TSDRPA+ERV++ +VAT+IAE FRD GKRV+LL DSLTR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  281  RAQREVGLASGEPPTRRSFPPSTFAVLPRLLERAGQGAHGSITALYTVLVEGDEESDPIA  340
            RA RE++LA+GE +    +PP+ F+ LPRLLER+G G  GSITA+YTVLVEGD+ ++P+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  341  EEVRSILDGHIVLSRKIALANRYPAIDVLASLSRVMPLVASRAHQHAAARVRELIAKYQE  400
            +EVRS+LDGHIVLSR++A   +YPAIDVLA+LSRV P+V+S+ H++ AA +R  +A YQE
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  401  IELLVQIGEYREGSDRLGDLALRARDAIGAFCAQASDEDVRFDALLAKLTKLAND  455
            +ELL++IGEY+ G D   D A+ +   I +F  Q+ DE    + L+ KL ++  +
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

115) Bmul_3747 in NC_010086


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  337 bits (1264),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 213/415 (52%), Positives = 306/415 (74%), Gaps = 4/415 (0%)

Query  46   GRVNHAVGQILNATGIRAKLGEICELRTPNQPTLLAEVVGFSRQTTLLTPLGDVAGLSPE  105
            GR+++  + +LNA      +GE+C ++  ++   LAEVVG++   +LL+P+   AGL   
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  106  TTVVPSGREHVFPVGEALFGRVLDGLGRPLDDRGPVTGATWVSTQQDPPNPLARRMIDTP  165
              V++  R H  PVGEAL+GRV+DG+GRPLD+R  +    W   +  PP ++ R+ I  P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  166  FPTGVRVIDGLMTLGVGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVRE  225
            + TG+R ID++ T G GQRVGIF+++GVGKSTLL+M+  +++AD NV+ L+GERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  226  FIEHALSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFA  285
            FI+ +LS E R R ++VV+TSDRPA+ERV++ +VAT+IAE FRD GKRV+LL DSLTR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  286  RAQREVGLASGEPPTRRSFPPSTFAVLPRLLERAGQGATGSITALYTVLVEGDEESDPIA  345
            RA RE++LA+GE +    +PP+ F+ LPRLLER+G G  GSITA+YTVLVEGD+ ++P+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  346  EEVRSILDGHIVLSRKIALANRYPAIDVLASLSRVMPLVASRAHQQAAARVRELIAKYQE  405
            +EVRS+LDGHIVLSR++A   +YPAIDVLA+LSRV P+V+S+ H+Q AA +R  +A YQE
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  406  IELLVQIGEYREGSDRLGDLALRAREAIGAFCAQAQHEDVRFDALLAKLTKLAND  460
            +ELL++IGEY+ G D   D A+ +   I +F  Q+++E    + L+ KL ++  +
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

116) yscN in NC_010805


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  337 bits (1264),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 213/415 (52%), Positives = 306/415 (74%), Gaps = 4/415 (0%)

Query  46   GRVNHAVGQILNATGIRAKLGEICELRTPNQPTLLAEVVGFSRQTTLLTPLGDVAGLSPE  105
            GR+++  + +LNA      +GE+C ++  ++   LAEVVG++   +LL+P+   AGL   
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  106  TTVVPSGREHVFPVGEALFGRVLDGLGRPLDDRGPVTGATWVSTQQDPPNPLARRMIDTP  165
              V++  R H  PVGEAL+GRV+DG+GRPLD+R  +    W   +  PP ++ R+ I  P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  166  FPTGVRVIDGLMTLGVGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVRE  225
            + TG+R ID++ T G GQRVGIF+++GVGKSTLL+M+  +++AD NV+ L+GERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  226  FIEHALSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFA  285
            FI+ +LS E R R ++VV+TSDRPA+ERV++ +VAT+IAE FRD GKRV+LL DSLTR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  286  RAQREVGLASGEPPTRRSFPPSTFAVLPRLLERAGQGATGSITALYTVLVEGDEESDPIA  345
            RA RE++LA+GE +    +PP+ F+ LPRLLER+G G  GSITA+YTVLVEGD+ ++P+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  346  EEVRSILDGHIVLSRKIALANRYPAIDVLASLSRVMPLVASRAHQQAAARVRELIAKYQE  405
            +EVRS+LDGHIVLSR++A   +YPAIDVLA+LSRV P+V+S+ H+Q AA +R  +A YQE
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  406  IELLVQIGEYREGSDRLGDLALRAREAIGAFCAQAQHEDVRFDALLAKLTKLAND  460
            +ELL++IGEY+ G D   D A+ +   I +F  Q+++E    + L+ KL ++  +
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

117) escN in NC_013716


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  337 bits (1266),  Expect = 7e-94, Method: Compositional matrix adjust.
 Identities = 208/402 (52%), Positives = 301/402 (75%), Gaps = 7/402 (1%)

Query  48   ARLPNARIGAFYKIEPGQRLAEVIAINGDEVFLLPFEHVSGMYCGQWLSYQGEEFKIRVG  107
            A+LP   +G +  I PG+ LAEV++ING   +L PF   +G+ CGQ +       ++ VG
Sbjct  35   AWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVG  94

Query  108  DELLGRLVDGIGRPM-GSNIATLYLPFKRSLYAE-PPDPLLRQVIDQPFTLGVRAIDGLL  165
            + LLGR++DG+GRP+ G +++ +     +  Y   PP +++RQ I QP+  G+RAID++ 
Sbjct  95   EALLGRVIDGFGRPLDGRELPEVC----WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVA  150

Query  166  TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-LPQSTLS  224
            TCG GQR+GIF+++GVGKSTLL+M+CN++ AD  VL LIGERGREV EF+ + L++ T  
Sbjct  151  TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK  210

Query  225  KCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGE  284
            +CV+VV+TSDRPALER++A F ATTIAE+FRD+GK V+L+ DS+TRYARAAR+++LA+GE
Sbjct  211  RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE  270

Query  285  PDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV  344
              V G +PP+VFS+LP+LLER+G + KGSITA+YTVL+E+D++N+P++DEVRS+LDGHIV
Sbjct  271  TAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  345  LTRELAEENHFPAIDIGLSASRVMHNVVKSEHLRAAAECKKLIATYKNIELLIRIGEYTM  404
            L+R LAE  H+PAID+  + SRV   V   EH + AA  ++ +A Y+++ELLIRIGEY  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  405  GQDPEADKAIKNRKAIQSFLQQSTKDISSYEKTIENLFKVVA  446
            G D ++DKAI     I +FL+QS  ++ + E  IE+L ++++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

118) HCH_03268 in NC_007645


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  337 bits (1266),  Expect = 7e-94, Method: Compositional matrix adjust.
 Identities = 211/414 (51%), Positives = 303/414 (74%), Gaps = 5/414 (1%)

Query  32   RGRVTQAVGTIVKASVNGVRIGEICELVDPESQRSILAEVIGFSRQEALLTPLSEMEGLS  91
            +GR+ +  +T+++A + GV +GE+C  + P  +   LAEV+G++   ALL+P++   GL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCC-IKPGEE---LAEVVGINGSKALLSPFTSTAGLH  77

Query  92   AHTEVIPTGRSHEIQISEGILGRVLDGLGAPIDDGEPLTGGVPYPIISASPNPLTRRLVE  151
               +V++  R H++ ++E++LGRV+DG+G P+D G  L         + +P ++ R+ + 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRELPEVCWKDYDAMPPPAMVRQPIT  136

Query  152  TPMTTGVRAIDGMLTCGEGQRMGVFAAAGVGKSTLLSMITRHTDADIVVIGLIGERGREV  211
             P+ TG+RAID++ TCGEGQR+G+F+A+GVGKSTLL+M+    DAD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  212  RGFIERDLGAEGMQRAVVVAATSDRPAMERVKAGYVATAIAEHFRDQGKRVLLLIDSVTR  271
            R FI+  L+ E  +R V+V ATSDRPA+ERV+A +VAT+IAE FRD+GKRV+LL DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  272  FARALREIGLAAGEPPARRGFPPTVFATLPKLLERAGPGAKGAISALYTVLVEGDDMTEP  331
            +ARA REI+LAAGE +    +PP VF++LP+LLER+G G KG+I+A+YTVLVEGDDM EP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  332  VADEVRSILDGHIVLSRALAESGHFPAVDILASSSRLMNDIATPEqlqqarrlrqllarY  391
            +ADEVRS+LDGHIVLSR LAE GH+PA+D+LA+ SR+   +++ E+ Q A  LR+ LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  392  KEIELLVRIGEYQPGTDPLADAAIKAIEPINQFLRQHDGAPCSMADTLAQLQSL  445
            +E+ELL+RIGEYQ G D  +D AI +   I  FLRQ  +  C+    + +L+ +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

119) sctO in NC_015713


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  337 bits (1265),  Expect = 8e-94, Method: Compositional matrix adjust.
 Identities = 211/415 (51%), Positives = 304/415 (74%), Gaps = 5/415 (1%)

Query  23   HGRITEIVGMLIKAVVPNVKMGEVCLIKRDGDPLIAEVVGFTKEEVYLSPLGEMTGVGPS  82
             GRI ++ + L++A +P V MGE+C IK + +  +AEVVG+      LSP+   +G+  +
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  83   SEVIPMRLPLHIKVGPNLLGRVLDGLGHPLDTAEKGPLELEETYSVLNAPPDPLKREMID  142
             +V+++R   ++ VG  LLGRV+DG+G+PLD  E   +   + Y  +  PP ++ R+ I 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD-YDAM--PPPAMVRQPIT  136

Query  143  KPISTGIRAIDGVLTAGRGQRIGIFAAAGGGKSTTLGMIARYAQADVNVITLIGERGREV  202
            +P+ TGIRAID+V T G GQR+GIF+A+G GKST L+M+   ++AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  203  REFIEHDLGPEGVARSVIIVSTSDQAAQLRLNAAYVGTAIAEYFRDQGKTVILMMDSVTR  262
            REFI+  L+ E   R VI+V+TSD++A  R+ A +V+T+IAE+FRD+GK V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  263  FARALREIGLAAGEPPARAGYTPSVFATLPKLLERSGNSDKGSITAFYTILVAGDDMNEP  322
            +ARA REI+LAAGE +  + Y P+VF++LP+LLER+G ++KGSITAFYT+LV GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  323  VADEVRSILDGHIILSSELARQYHYPAIDILSSASRILPNVTSEEHRKLIGQIREVLANY  382
            +ADEVRS+LDGHI+LS  LA + HYPAID+L++ SR++P VTS+EHR+L + +R  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  383  KKNELLIRIGEYKPGSDKQADFAIKYVDKVNRFLKQKVDEKCTFQETLEQLQALF  437
            +  ELLIRIGEY+ G D ++D AI     +  FL+Q  DE C  +  +E+L+ ++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

120) Bcenmc03_5437 in NC_010515


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  337 bits (1265),  Expect = 9e-94, Method: Compositional matrix adjust.
 Identities = 213/415 (52%), Positives = 305/415 (74%), Gaps = 4/415 (0%)

Query  42   GRVNHAVGQILNATGIRARLGEICELRTPNQPTLLAEVVGFSRQTTLLTPLGDVAGLSPE  101
            GR+++  + +LNA      +GE+C ++  ++   LAEVVG++   +LL+P+   AGL   
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  102  TTVVPSGREHVFPVGEALFGRVLDGLGRPLDDRGPVTGAAWVSTQQDPPNPLARKMIDTP  161
              V++  R H  PVGEAL+GRV+DG+GRPLD+R  +    W   +  PP ++ R+ I  P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  162  FPTGVRVIDGLMTLGIGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVRE  221
            + TG+R ID++ T G GQRVGIF+++GVGKSTLL+M+  +++AD NV+ L+GERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  222  FIEHSLSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFA  281
            FI+ +LS E R R ++VV+TSDRPA+ERV++ +VAT+IAE FRD GKRV+LL DSLTR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  282  RAQREVGLASGEPPTRRSFPPSTFAVLPRLLERAGQGAHGSITALYTVLVEGDEESDPIA  341
            RA RE++LA+GE +    +PP+ F+ LPRLLER+G G  GSITA+YTVLVEGD+ ++P+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  342  EEVRSILDGHIVLSRKIALANRYPAIDVLASLSRVMPLVASRAHQHAAARVRELIAKYQE  401
            +EVRS+LDGHIVLSR++A   +YPAIDVLA+LSRV P+V+S+ H++ AA +R  +A YQE
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  402  IELLVQIGEYREGSDRLGDLALRARDAIGAFCAQASDEDVRFDALLAKLTKLAND  456
            +ELL++IGEY+ G D   D A+ +   I +F  Q+ DE    + L+ KL ++  +
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

121) hrcN in NC_006834


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  336 bits (1262),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 208/419 (50%), Positives = 307/419 (74%), Gaps = 7/419 (1%)

Query  24   RYGKVVEVVGTMLKVAGVQVSLGEVCELRQRDGTLLQRAEVVGFSRDLALLAPFGELIGL  83
            R G++ +V +T+L+     V +GE+C ++  +    + AEVVG++   ALL+PF    GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  84   SRETRVIGLGRPLAVPVGAALLGRVLDGLGEPSDGQG-AIACDTWVPIQAQAPDPMRRRL  142
                +V++L R   VPVG ALLGRV+DG+G P DG+  +  C  W   +A +P +M R+ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMVRQP  134

Query  143  IEHPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGR  202
            I +P+ TG+R +D++ T GEGQR+GIF+A+GVGKSTL++M+  + + D NV+VLIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  203  EVREFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSL  262
            EVREFI++ L+ +   R V+V ATSDR+++ER +A +V+T+IAE+FRD G RV+L+ DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  263  TRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGS  322
            TR+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GMGE GSITAFYTVL E+D  +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  323  DPIAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSDHSQAAGRLRRLLA  382
            +P+A+EVR++LDGH++LSR +A + +YPAIDVLA+LSRV + + + +H Q A+ LRR LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  383  KYNEVETLVQVGEYRQGSDAVADEAINRIDAIRDFLSQPTDQLSDYESTLEQLANVTDD  441
             Y+EVE L+++GEY++G D+ +D AI+    I  FL Q+ D++ + E  +E+L ++  +
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

122) XOO_0085 in NC_007705


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  336 bits (1262),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 208/419 (50%), Positives = 307/419 (74%), Gaps = 7/419 (1%)

Query  24   RYGKVVEVVGTMLKVAGVQVSLGEVCELRQRDGTLLQRAEVVGFSRDLALLAPFGELIGL  83
            R G++ +V +T+L+     V +GE+C ++  +    + AEVVG++   ALL+PF    GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  84   SRETRVIGLGRPLAVPVGAALLGRVLDGLGEPSDGQG-AIACDTWVPIQAQAPDPMRRRL  142
                +V++L R   VPVG ALLGRV+DG+G P DG+  +  C  W   +A +P +M R+ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMVRQP  134

Query  143  IEHPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGR  202
            I +P+ TG+R +D++ T GEGQR+GIF+A+GVGKSTL++M+  + + D NV+VLIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  203  EVREFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSL  262
            EVREFI++ L+ +   R V+V ATSDR+++ER +A +V+T+IAE+FRD G RV+L+ DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  263  TRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGS  322
            TR+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GMGE GSITAFYTVL E+D  +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  323  DPIAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSDHSQAAGRLRRLLA  382
            +P+A+EVR++LDGH++LSR +A + +YPAIDVLA+LSRV + + + +H Q A+ LRR LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  383  KYNEVETLVQVGEYRQGSDAVADEAINRIDAIRDFLSQPTDQLSDYESTLEQLANVTDD  441
             Y+EVE L+++GEY++G D+ +D AI+    I  FL Q+ D++ + E  +E+L ++  +
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

123) PXO_03396 in NC_010717


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  336 bits (1262),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 208/419 (50%), Positives = 307/419 (74%), Gaps = 7/419 (1%)

Query  24   RYGKVVEVVGTMLKVAGVQVSLGEVCELRQRDGTLLQRAEVVGFSRDLALLAPFGELIGL  83
            R G++ +V +T+L+     V +GE+C ++  +    + AEVVG++   ALL+PF    GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  84   SRETRVIGLGRPLAVPVGAALLGRVLDGLGEPSDGQG-AIACDTWVPIQAQAPDPMRRRL  142
                +V++L R   VPVG ALLGRV+DG+G P DG+  +  C  W   +A +P +M R+ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMVRQP  134

Query  143  IEHPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGR  202
            I +P+ TG+R +D++ T GEGQR+GIF+A+GVGKSTL++M+  + + D NV+VLIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  203  EVREFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSL  262
            EVREFI++ L+ +   R V+V ATSDR+++ER +A +V+T+IAE+FRD G RV+L+ DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  263  TRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGS  322
            TR+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GMGE GSITAFYTVL E+D  +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  323  DPIAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSDHSQAAGRLRRLLA  382
            +P+A+EVR++LDGH++LSR +A + +YPAIDVLA+LSRV + + + +H Q A+ LRR LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  383  KYNEVETLVQVGEYRQGSDAVADEAINRIDAIRDFLSQPTDQLSDYESTLEQLANVTDD  441
             Y+EVE L+++GEY++G D+ +D AI+    I  FL Q+ D++ + E  +E+L ++  +
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

124) Bamb_4222 in NC_008391


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  336 bits (1262),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 213/415 (52%), Positives = 305/415 (74%), Gaps = 4/415 (0%)

Query  45   GRVNHAVGQILNATGIRARLGEICELRTPNQPTLLAEVVGFSRQTTLLTPLGDVAGLSPE  104
            GR+++  + +LNA      +GE+C ++  ++   LAEVVG++   +LL+P+   AGL   
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  105  TTVVPSGREHVFPVGEALFGRVLDGLGRPLDDRGPVTGAAWVSTQQDPPNPLARKMIDTP  164
              V++  R H  PVGEAL+GRV+DG+GRPLD+R  +    W   +  PP ++ R+ I  P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  165  FPTGVRVIDGLMTLGIGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVRE  224
            + TG+R ID++ T G GQRVGIF+++GVGKSTLL+M+  +++AD NV+ L+GERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  225  FIEHSLSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFA  284
            FI+ +LS E R R ++VV+TSDRPA+ERV++ +VAT+IAE FRD GKRV+LL DSLTR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  285  RAQREVGLASGEPPTRRSFPPSTFAVLPRLLERAGQGATGSITALYTVLVEGDEESDPIA  344
            RA RE++LA+GE +    +PP+ F+ LPRLLER+G G  GSITA+YTVLVEGD+ ++P+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  345  EEVRSILDGHIVLSRKIALANRYPAIDVLASLSRVMPLVASRAHQQSAARVRELIAKYQE  404
            +EVRS+LDGHIVLSR++A   +YPAIDVLA+LSRV P+V+S+ H+Q AA +R  +A YQE
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  405  IELLVQIGEYREGSDRLGDLALRARDAIGAFCAQGSHEDVRFDALLAKLTKLAND  459
            +ELL++IGEY+ G D   D A+ +   I +F  Q+ +E    + L+ KL ++  +
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

125) BamMC406_4744 in NC_010552


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  336 bits (1261),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 213/415 (52%), Positives = 305/415 (74%), Gaps = 4/415 (0%)

Query  45   GRVNHAVGQILNATGIRARLGEICELRTPNQPTLLAEVVGFSRQTTLLTPLGDVAGLSPE  104
            GR+++  + +LNA      +GE+C ++  ++   LAEVVG++   +LL+P+   AGL   
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  105  TTVVPSGREHVFPVGEALFGRVLDGLGRPLDDRGPVTGAAWVSTQQDPPNPLARKMIDTP  164
              V++  R H  PVGEAL+GRV+DG+GRPLD+R  +    W   +  PP ++ R+ I  P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  165  FPTGVRVIDGLMTLGIGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVRE  224
            + TG+R ID++ T G GQRVGIF+++GVGKSTLL+M+  +++AD NV+ L+GERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  225  FIEHSLSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFA  284
            FI+ +LS E R R ++VV+TSDRPA+ERV++ +VAT+IAE FRD GKRV+LL DSLTR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  285  RAQREVGLASGEPPTRRSFPPSTFAVLPRLLERAGQGATGSITALYTVLVEGDEESDPIA  344
            RA RE++LA+GE +    +PP+ F+ LPRLLER+G G  GSITA+YTVLVEGD+ ++P+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  345  EEVRSILDGHIVLSRKIALANRYPAIDVLASLSRVMPLVASRAHQQSAARVRELIAKYQE  404
            +EVRS+LDGHIVLSR++A   +YPAIDVLA+LSRV P+V+S+ H+Q AA +R  +A YQE
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  405  IELLVQIGEYREGSDRLGDLALRARDAIGAFCAQGSHEDVRFDALLAKLTKLAND  459
            +ELL++IGEY+ G D   D A+ +   I +F  Q+ +E    + L+ KL ++  +
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

126) fliI in NC_016047


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  336 bits (1261),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 196/407 (49%), Positives = 298/407 (74%), Gaps = 6/407 (1%)

Query  2    TDSYKRYGKVKRVIGLMIESKGPASSIGDVCLIYAKGQSGNVIKAEVVGFQEENILLMPY  61
             D+Y R G+++ V + ++++  P+  +G++C I    ++G+ + AEVVG++  + LL P+
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL-AEVVGINGSKALLSPF  70

Query  62   LEAASIAPGSIVEATGESLRVKVGAGLIGQVIDAFGEPLDGKLLPKGLSPVSTEQSPPNP  121
              +A++  G  V A     +V VG +L+G+VID+FG PLDG+ LP  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  122  MKRPPIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALV  181
            M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD NV+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  182  GERGREVREFIEKDLGDEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMF  241
            GERGREVREFI+  L++E  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  242  MMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVD  301
            + DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  302  GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISTRQHLDAANKF  361
            GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + +++++H + A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  362  RELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTDE  408
            R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ DE
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

127) fliI in NC_014639


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  336 bits (1260),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 196/409 (48%), Positives = 297/409 (73%), Gaps = 6/409 (1%)

Query  13   SDSYKRYGKVKRVIGLMIESKGPESSIGDVCLIHPKGSSDKVIKAEVVGFQDENILLMPY  72
            +D+Y R G+++ V + ++++  P   +G++C I P   ++ +  AEVVG+++ + LL P+
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKP---GEEL--AEVVGINGSKALLSPF  70

Query  73   LEAASISPGSIVEATGESLRIKVGAGLIGQVIDAFGEPLDGKLLPKGLSPVSTDQAPPNP  132
              +A++  G  V A     ++ VG +L+G+VID+FG PLDG+ LP  +     D  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  133  MKRPPIREKMAVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALV  192
            M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD NV+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  193  GERGREVREFIEKDLGPEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMF  252
            GERGREVREFI+  L+ E  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  253  MMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEQGTITAFYTVLVD  312
            + DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E+G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  313  GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNVLKSISRVMSNISAPHHLDAANKF  372
            GDDMNEP+AD VR++LDGHIVL R LA++G++PA++VL ++SRV + +++ +H + A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  373  RELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTEESS  421
            R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ +E  
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

128) fliI in NC_000964


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  335 bits (1259),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 202/418 (49%), Positives = 300/418 (72%), Gaps = 9/418 (2%)

Query  13   TDSYKRYGKVKRVIGLMIESKGPASSIGDLCLIYAKGQSGKVIKAEVVGFQEENILLMPY  72
             D+Y R G+++ V + ++++  P+  +G+LC I    ++G  + AEVVG++  + LL P+
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL-AEVVGINGSKALLSPF  70

Query  73   LEAASIAPGSIVEATGESLRVKVGTGLIGQVIDAFGEPLDGKLLPKGLSPVSTEQSPPNP  132
              +A++  G  V A     +V VG +L+G+VID+FG PLDG+ LP  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  133  MKRPPIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALV  192
            M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD NV+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  193  GERGREVREFIEKDLGKEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMF  252
            GERGREVREFI+  L+ E  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  253  MMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVD  312
            + DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  313  GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNVLKSISRVMSNISTKQHLDAANKF  372
            GDDMNEP+AD VR++LDGHIVL R LA++G++PA++VL ++SRV + +++ +H + A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  373  RELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTDE---PALLEESI  427
            R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ DE   P LL E +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

129) fliI in NC_020507


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  335 bits (1259),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 202/418 (49%), Positives = 300/418 (72%), Gaps = 9/418 (2%)

Query  13   TDSYKRYGKVKRVIGLMIESKGPASSIGDLCLIYAKGQSGKVIKAEVVGFQEENILLMPY  72
             D+Y R G+++ V + ++++  P+  +G+LC I    ++G  + AEVVG++  + LL P+
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL-AEVVGINGSKALLSPF  70

Query  73   LEAASIAPGSIVEATGESLRVKVGTGLIGQVIDAFGEPLDGKLLPKGLSPVSTEQSPPNP  132
              +A++  G  V A     +V VG +L+G+VID+FG PLDG+ LP  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  133  MKRPPIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALV  192
            M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD NV+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  193  GERGREVREFIEKDLGKEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMF  252
            GERGREVREFI+  L+ E  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  253  MMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVD  312
            + DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  313  GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNVLKSISRVMSNISTKQHLDAANKF  372
            GDDMNEP+AD VR++LDGHIVL R LA++G++PA++VL ++SRV + +++ +H + A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  373  RELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTDE---PALLEESI  427
            R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ DE   P LL E +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

130) fliI in NC_018520


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  335 bits (1259),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 202/418 (49%), Positives = 300/418 (72%), Gaps = 9/418 (2%)

Query  13   TDSYKRYGKVKRVIGLMIESKGPASSIGDLCLIYAKGQSGKVIKAEVVGFQEENILLMPY  72
             D+Y R G+++ V + ++++  P+  +G+LC I    ++G  + AEVVG++  + LL P+
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL-AEVVGINGSKALLSPF  70

Query  73   LEAASIAPGSIVEATGESLRVKVGTGLIGQVIDAFGEPLDGKLLPKGLSPVSTEQSPPNP  132
              +A++  G  V A     +V VG +L+G+VID+FG PLDG+ LP  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  133  MKRPPIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALV  192
            M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD NV+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  193  GERGREVREFIEKDLGKEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMF  252
            GERGREVREFI+  L+ E  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  253  MMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVD  312
            + DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  313  GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNVLKSISRVMSNISTKQHLDAANKF  372
            GDDMNEP+AD VR++LDGHIVL R LA++G++PA++VL ++SRV + +++ +H + A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  373  RELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTDE---PALLEESI  427
            R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ DE   P LL E +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

131) Bcen_3519 in NC_008061


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  335 bits (1259),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 211/415 (51%), Positives = 305/415 (74%), Gaps = 4/415 (0%)

Query  42   GRVNHAVGQILNATGIRARLGEICELRTPNQPTLLAEVVGFSRQTTLLTPLGDVAGLSPE  101
            GR+++  + +LNA      +GE+C ++  ++   LAEVVG++   +LL+P+   AGL   
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  102  TTVVPSGREHVFPVGEGLFGRVLDGLGRPLDDRGPVTGAAWVSTQQDPPNPLARKMIDTP  161
              V++  R H  PVGE+L+GRV+DG+GRPLD+R  +    W   +  PP ++ R+ I  P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  162  FPTGVRVIDGLMTLGIGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVRE  221
            + TG+R ID++ T G GQRVGIF+++GVGKSTLL+M+  +++AD NV+ L+GERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  222  FIEHSLSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFA  281
            FI+ +LS E R R ++VV+TSDRPA+ERV++ +VAT+IAE FRD GKRV+LL DSLTR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  282  RAQREVGLASGEPPTRRSFPPSTFAVLPRLLERAGQGAHGSITALYTVLVEGGEESDPIA  341
            RA RE++LA+GE +    +PP+ F+ LPRLLER+G G  GSITA+YTVLVEG++ ++P+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  342  EEVRSILDGHIVLSRKIALANRYPAIDVLASLSRVMPLVASRAHQHAAARVRELIAKYQE  401
            +EVRS+LDGHIVLSR++A   +YPAIDVLA+LSRV P+V+S+ H++ AA +R  +A YQE
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  402  IELLVQIGEYREGSDRLGDLALRARDAIGAFCAQASDEDVRFDALLAKLTKLAND  456
            +ELL++IGEY+ G D   D A+ +   I +F  Q+ DE    + L+ KL ++  +
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

132) fliI in NC_020244


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  335 bits (1258),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 197/407 (49%), Positives = 294/407 (73%), Gaps = 6/407 (1%)

Query  2    TDSYKRYGKVKRVIGLMIESKGPASSIGDVCLIYAKGQSGKVIKAEVVGFQEENILLMPY  61
             D+Y R G+++ V + ++++  P+  +G++C I    ++G  + AEVVG++  + LL P+
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL-AEVVGINGSKALLSPF  70

Query  62   LEAASIAPGSIVEATGESLRVKVGAGLIGQVIDAFGEPLDGKLLPKGLSPVSTEQSPPNP  121
              +A++  G  V A     +V VG +L+G+VID+FG PLDG+ LP  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  122  MKRPPIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALV  181
            M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD NV+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  182  GERGREVREFIEKDLGKEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMF  241
            GERGREVREFI+  L+ E  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  242  MMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVD  301
            + DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  302  GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNVLKSISRVMSNISTKQHMDAANKF  361
            GDDMNEP+AD VR++LDGHIVL R LA++G++PA++VL ++SRV + +++ +H + A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  362  RELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQETDE  408
            R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q  DE
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

133) Marpi_1086 in NC_016751


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  335 bits (1258),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 204/429 (48%), Positives = 305/429 (72%), Gaps = 5/429 (1%)

Query  5    NDILENINQRLNELDIFSLEGIVDRITGVVIESRGPDVSLGDLCSITLKDGSTALCEVVG  64
            N++++ +  +    D +   G ++ +++ +++++ P+V +G+LC I     +  L EVVG
Sbjct  3    NELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIK---PGEELAEVVG  59

Query  65   FVGNKVLLMPFEDVHGLYVGARVKKLNRKVSIGVSNNLLGRVLDGLGRPMDGKPLYAEKY  124
            + G+K LL PF    GL  G +V  L R+  + V++ LLGRV+DG+GRP+DG+ L +E  
Sbjct  60   INGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL-PEVC  118

Query  125  RSIYSP-PPNPLIRNKIEEPLPVGIRAIDGLITLGKGQRIGIFAGSGVGKSTLLGMIARN  183
            +  Y + PP +++R+ I +PL  GIRAID++ T G GQR+GIF+++GVGKSTLL+M+   
Sbjct  119  WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNA  178

Query  184  TSADINVISLIGERGREVREFIERDLGEEGLKRSVVVVSTSDQPALMRTKALLSATTIAE  243
              AD NV+ LIGERGREVREFI+  L+EE  KR V+VV+TSD+PAL R +AL+ ATTIAE
Sbjct  179  PDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE  238

Query  244  YFRDQGYNVMLMVDSLTRWAMAQREIGLSIGEPPATRGYTPSVFAELPKILERAGNSDKG  303
            +FRD+G  V+L+ DSLTR A A REI+L+ GE + +  Y P+VF+ LP++LER+G ++KG
Sbjct  239  FFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKG  298

Query  304  SITAIYTVLVEGDDFNEPISDTVRGIVDGHILLSRRLAESSHYPAIDVLASISRLMSTVA  363
            SITA+YTVLVEGDD NEP++D VR+++DGHI+LSRRLAE +HYPAIDVLA++SR+ + V+
Sbjct  299  SITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVT  358

Query  364  KEEHLEAAYRVRDIMATYNDAKDLIEVGAYKEGTNPKIDIAKREIDNINQFLRQRTNENP  423
             +EH + A  +R  +A Y++   LI +G Y+ G +   D A     +I  FLRQ  +E  
Sbjct  359  SHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

Query  424  DFNQIVNQL  432
            + + ++++L
Sbjct  419  GPELLIEKL  427

134) A7A1_3461 in NC_019896


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  335 bits (1256),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 201/418 (49%), Positives = 300/418 (72%), Gaps = 9/418 (2%)

Query  13   TDSYKRYGKVKRVIGLMIESKGPASSIGDVCLIYAKGQSGKVIKAEVVGFQEENILLMPY  72
             D+Y R G+++ V + ++++  P+  +G++C I    ++G  + AEVVG++  + LL P+
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL-AEVVGINGSKALLSPF  70

Query  73   LEAASIAAGSIVEATGESLRVKVGTGLVGQVIDAFGEPLDGKLLPKGLSPVSTEQSPPNP  132
              +A++  G  V A     +V VG +L+G+VID+FG PLDG+ LP  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  133  MKRPPIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALV  192
            M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD NV+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  193  GERGREVREFIEKDLGKEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMF  252
            GERGREVREFI+  L+ E  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  253  MMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVD  312
            + DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  313  GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNVLKSISRVMSNISTKQHLDAANKF  372
            GDDMNEP+AD VR++LDGHIVL R LA++G++PA++VL ++SRV + +++ +H + A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  373  RELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTDE---PALLEESI  427
            R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ DE   P LL E +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

135) fliI in NC_014479


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  335 bits (1257),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 196/407 (49%), Positives = 297/407 (73%), Gaps = 6/407 (1%)

Query  13   TDSYKRYGKVKRVIGLMIESKGPASSIGDVCLIYAKGQSGNVIKAEVVGFQEESILLMPY  72
             D+Y R G+++ V + ++++  P+  +G++C I    ++G+ + AEVVG++    LL P+
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL-AEVVGINGSKALLSPF  70

Query  73   LEAASIAPGSIVEATGESLRVKVGAGLIGQVIDAFGEPLDGKLLPKGLSPVSTEQSPPNP  132
              +A++  G  V A     +V VG +L+G+VID+FG PLDG+ LP  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  133  MKRPPIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALV  192
            M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD NV+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  193  GERGREVREFIEKDLGDEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMF  252
            GERGREVREFI+  L++E  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  253  MMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVD  312
            + DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  313  GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISTRQHLDAANKF  372
            GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + +++++H + A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  373  RELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTDE  419
            R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ DE
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

136) hrcN in NC_015856


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  334 bits (1255),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 204/403 (51%), Positives = 299/403 (75%), Gaps = 9/403 (2%)

Query  24   QHGKVVEIIGTLLKVGGLDATLGELCELREADGRLVQRAEVVGFTRQFALLAPFGSVVGL  83
            + G++ ++ +TLL+    +  +GELC ++ ++    + AEVVG+    ALL+PF S  GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  84   SRSTRVVGQGRPLSVPVGPALMGRVLDGLGEPLD--RLGAIETKEFRSVIAPAPDPLTRR  141
              + +V++  R   VPVG AL+GRV+DG+G PLD   L  +  K++ ++   +P ++ R+
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQ  133

Query  142  MIEEPLDTGVRVIDGLMTIGEGQRVGIFAPAGVGKSTLLGMLARGADCDVNVVVLIGERG  201
             I +PL TG+R ID++ T GEGQRVGIF+++GVGKSTLL+ML  ++D D NV+VLIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  202  REVREFIELILGKEGMAKSVVVCATSDRSSIERAKAAYVGTAIAEYFRDQGMRVLLMMDS  261
            REVREFI++ L+ E   + V+V ATSDR+++ER +A +V+T+IAE+FRD+G RV+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  262  LTRFARAQREIGLSAGEPPTRRGFPPSIFAELPRLLERAGMGSTGSITAFYTVLAEDEEG  321
            LTR+ARA REI+L+AGE +    +PP++F+ LPRLLER+GMG  GSITAFYTVL E+++ 
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  322  NDPVSEEVRGILDGHIVLSRAIAARNHYPAIDVLNSLSRVMTLVASSAHCNGAGRIRKLM  381
            N+P+++EVR++LDGHIVLSR +A R HYPAIDVL +LSRV  +V+S  H + A+ +R+ +
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  382  SKFNEIELLLQIGEYQQGTDPLADEAVSHHDAIEQFLIQSTDE  424
            + ++E+ELL++IGEYQ+G D  +D A+     I  FL QS DE
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

137) fliI in NC_014976


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  334 bits (1255),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 201/418 (49%), Positives = 300/418 (72%), Gaps = 9/418 (2%)

Query  13   TDSYKRYGKVKRVIGLMIESKGPASSIGDVCLIYAKGQSGKVIKAEVVGFQEENILLMPY  72
             D+Y R G+++ V + ++++  P+  +G++C I    ++G  + AEVVG++  + LL P+
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL-AEVVGINGSKALLSPF  70

Query  73   LEAASIAPGSIVEATGESLRVKVGTGLIGQVIDAFGEPLDGKLLPKGLSPVSTEQSPPNP  132
              +A++  G  V A     +V VG +L+G+VID+FG PLDG+ LP  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  133  MKRPPIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALV  192
            M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD NV+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  193  GERGREVREFIEKDLGKEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMF  252
            GERGREVREFI+  L+ E  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  253  MMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVD  312
            + DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  313  GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNVLKSISRVMSNISTKQHLDAANKF  372
            GDDMNEP+AD VR++LDGHIVL R LA++G++PA++VL ++SRV + +++ +H + A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  373  RELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTDE---PALLEESI  427
            R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ DE   P LL E +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

138) fliI in NC_017196


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  334 bits (1255),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 201/418 (49%), Positives = 300/418 (72%), Gaps = 9/418 (2%)

Query  13   TDSYKRYGKVKRVIGLMIESKGPASSIGDVCLIYAKGQSGKVIKAEVVGFQEENILLMPY  72
             D+Y R G+++ V + ++++  P+  +G++C I    ++G  + AEVVG++  + LL P+
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL-AEVVGINGSKALLSPF  70

Query  73   LEAASIAPGSIVEATGESLRVKVGTGLIGQVIDAFGEPLDGKLLPKGLSPVSTEQSPPNP  132
              +A++  G  V A     +V VG +L+G+VID+FG PLDG+ LP  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  133  MKRPPIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALV  192
            M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD NV+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  193  GERGREVREFIEKDLGKEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMF  252
            GERGREVREFI+  L+ E  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  253  MMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVD  312
            + DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  313  GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNVLKSISRVMSNISTKQHLDAANKF  372
            GDDMNEP+AD VR++LDGHIVL R LA++G++PA++VL ++SRV + +++ +H + A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  373  RELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTDE---PALLEESI  427
            R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ DE   P LL E +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

139) fliI in NC_020832


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  334 bits (1254),  Expect = 6e-93, Method: Compositional matrix adjust.
 Identities = 197/407 (49%), Positives = 294/407 (73%), Gaps = 6/407 (1%)

Query  13   TDSYKRYGKVKRVIGLMIESKGPASSIGDVCLIYAKGQSGKVIKAEVVGFQEENILLMPY  72
             D+Y R G+++ V + ++++  P+  +G++C I    ++G  + AEVVG++  + LL P+
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL-AEVVGINGSKALLSPF  70

Query  73   LEAASIAPGSIVEATGESLRVKVGAGLIGQVIDAFGEPLDGKLLPKGLSPVSTEQSPPNP  132
              +A++  G  V A     +V VG +L+G+VID+FG PLDG+ LP  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  133  MKRPPIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALV  192
            M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD NV+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  193  GERGREVREFIEKDLGKEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMF  252
            GERGREVREFI+  L+ E  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  253  MMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVD  312
            + DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  313  GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNVLKSISRVMSNISTKQHMDAANKF  372
            GDDMNEP+AD VR++LDGHIVL R LA++G++PA++VL ++SRV + +++ +H + A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  373  RELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQETDE  419
            R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q  DE
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

140) fliI in NC_017195


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  334 bits (1252),  Expect = 8e-93, Method: Compositional matrix adjust.
 Identities = 197/407 (49%), Positives = 295/407 (73%), Gaps = 6/407 (1%)

Query  2    TDSYKRYGKVKRVIGLMIESKGPASSIGDVCLIYAKGQSGKVIKAEVVGFQEENILLMPY  61
             D+Y R G+++ V + ++++  P+  +G++C I    ++G  + AEVVG++  + LL P+
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL-AEVVGINGSKALLSPF  70

Query  62   LEAASIAPGSIVEATGESLRVKVGTGLIGQVIDAFGEPLDGKLLPKGLSPVSTEQSPPNP  121
              +A++  G  V A     +V VG +L+G+VID+FG PLDG+ LP  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  122  MKRPPIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALV  181
            M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD NV+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  182  GERGREVREFIEKDLGKEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMF  241
            GERGREVREFI+  L+ E  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  242  MMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVD  301
            + DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  302  GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNVLKSISRVMSNISTKQHLDAANKF  361
            GDDMNEP+AD VR++LDGHIVL R LA++G++PA++VL ++SRV + +++ +H + A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  362  RELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTDE  408
            R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ DE
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

141) MY9_1771 in NC_017743


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  333 bits (1251),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 197/407 (49%), Positives = 296/407 (73%), Gaps = 6/407 (1%)

Query  13   TDSYKRYGKVKRVIGLMIESKGPASSIGDVCLIYAKGQSGKVIKAEVVGFQEENILLMPY  72
             D+Y R G+++ V + ++++  P+  +G++C I    ++G  + AEVVG++  + LL P+
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL-AEVVGINGSKALLSPF  70

Query  73   LEAASIAPGSIVEATGESLRVKVGSGLIGQVIDAFGEPLDGKLLPKGLSPVSTEQSPPNP  132
              +A++  G  V A     +V VG +L+G+VID+FG PLDG+ LP  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  133  MKRPPIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALV  192
            M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD NV+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  193  GERGREVREFIEKDLGKEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMF  252
            GERGREVREFI+  L+ E  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  253  MMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVD  312
            + DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  313  GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNVLKSISRVMSNISTRQHLDAANKF  372
            GDDMNEP+AD VR++LDGHIVL R LA++G++PA++VL ++SRV + +++++H + A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  373  RELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTDE  419
            R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ DE
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

142) fliI in NC_017668


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  333 bits (1249),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 198/411 (49%), Positives = 288/411 (71%), Gaps = 8/411 (1%)

Query  13   SDTFKRYGRIHRVVGLMVESKGPEASIGDLCYIHSHSDRNQSIAAEVVGFNQENILLMPY  72
            +D + R GRI+ V + ++++  P   +G+LC I +  +      AEVVG+N  + LL P+
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGINGSKALLSPF  70

Query  73   KEMRDISPGSLVEATGEPMKVKAGPGLIGKILDATGQPLDGRALPK-GLTMYPTDQSPPN  131
                ++  G  V A     +V  G +L+G+++D+ G+PLDGR LP      Y  D  PP 
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPP  128

Query  132  PLSRPTIKEPIQVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMISRNSSADLNVIAL  191
            ++ R  I +P+  G+RAIDS+ T G GQRVGIF+++GVGKSTL++M+   + AD NV+ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  IGERGREVREFIENDLGEDGLKRSIVIVATSDQPALMRTKGAYTATAISEYFRDLGYNVN  251
            IGERGREVREFI+  L+E+  KR +++VATSD+PAL R ++ + AT+I+E+FRD G  V 
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  LMMDSVTRFAMAQREIGLATGEPPTTKGYTPSVFALLPKLLERTGTSSKGTITAFYTVLV  311
            L+ DS+TR+A A REI+LA+GE + +  Y P+VF+ LP+LLERTG + KG+ITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPVSDTVRGILDGHFVLDRNLAEQGQFPAINILRSISRVMKQITSDEHKQSAER  371
            +GDDMNEP++D VR++LDGH+VL R LAE+G++PAI++L ++SRV   +TS+EH+Q A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  LRALLARYEENSELIQIGAYKKGSSKDIDQAIHYHPSIINFLKQGVQEPSS  422
            LR  LA Y+E   LI+IG Y++G   D D+AI+  P I  FL+Q+ +E  +
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

143) escN in NC_011601


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  332 bits (1245),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 206/402 (52%), Positives = 301/402 (75%), Gaps = 7/402 (1%)

Query  48   ARLPKARIGAFYKIEPSQRLAEVIAIDEDEVFLLPFEHVSGMYCGQWLSYQGDEFKIRVG  107
            A+LP   +G +  I P++ LAEV++I+    +L PF   +G+ CGQ +       ++ VG
Sbjct  35   AWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVG  94

Query  108  DALLGRLIDGIGRPMESNIVAP--YLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGLL  165
            +ALLGR+IDG+GRP+++  ++      ++    A PP +++RQ I QP++ G+RAID++ 
Sbjct  95   EALLGRVIDGFGRPLDGRELPEVCWKDYD----AMPPPAMVRQPITQPLMTGIRAIDSVA  150

Query  166  TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-LPQSTLS  224
            TCG GQR+GIF+++GVGKSTLL+M+CN++ AD  VL LIGERGREV EF+ + L++ T  
Sbjct  151  TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK  210

Query  225  KCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGE  284
            +CV+VV+TSDRPALER++A F ATTIAE+FRD+GK V+L+ DS+TRYARAAR+++LA+GE
Sbjct  211  RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE  270

Query  285  PDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV  344
              V G +PP+VFS+LP+LLER+G + KGSITA+YTVL+E+D++N+P++DEVRS+LDGHIV
Sbjct  271  TAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  345  LTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVELLIRIGEYTM  404
            L+R LAE  H+PAID+  + SRV   V + EH + AA  ++ +A Y++VELLIRIGEY  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  405  GQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKVVA  446
            G D ++DKAI     I  F++QS  ++ + E  IE L ++++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

144) escN in NC_013364


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  332 bits (1246),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 205/402 (51%), Positives = 303/402 (76%), Gaps = 7/402 (1%)

Query  48   ARLPKARIGAFYKIEPSQRLAEVIAIDEDEVFLLPFEHVSGMYCGQWLSYQGDEFKIRVG  107
            A+LP   +G +  I P++ LAEV++I+    +L PF   +G+ CGQ +       ++ VG
Sbjct  35   AWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVG  94

Query  108  DALLGRLVDGIGRPMES-NIAAPYLPFERSLYAE-PPDPLLRQVIDQPFILGVRAIDGLL  165
            +ALLGR++DG+GRP+++ +++       +  Y   PP +++RQ I QP++ G+RAID++ 
Sbjct  95   EALLGRVIDGFGRPLDGRELPEVC----WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVA  150

Query  166  TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-LPQSTLS  224
            TCG GQR+GIF+++GVGKSTLL+M+CN++ AD  VL LIGERGREV EF+ + L++ T  
Sbjct  151  TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK  210

Query  225  KCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGE  284
            +CV+VV+TSDRPALER++A F ATTIAE+FRD+GK V+L+ DS+TRYARAAR+++LA+GE
Sbjct  211  RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE  270

Query  285  PDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV  344
              V G +PP+VFS+LP+LLER+G + KGSITA+YTVL+E+D++N+P++DEVRS+LDGHIV
Sbjct  271  TAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  345  LTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYNNVELLIRIGEYTM  404
            L+R LAE  H+PAID+  + SRV   V + EH + AA  ++ +A Y++VELLIRIGEY  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  405  GQDPEADKAIKNRKLIQSFIQQSTKDISSYEKTIENLFKVVA  446
            G D ++DKAI     I +F++QS  ++ + E  IE+L ++++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

145) Cabther_B0657 in NC_016025


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  332 bits (1244),  Expect = 4e-92, Method: Compositional matrix adjust.
 Identities = 208/416 (50%), Positives = 297/416 (72%), Gaps = 5/416 (1%)

Query  27   RGRVTELVGLLVRASVPGARIEELCLIRSPHRAQDLKAEVVGFRGSEIILMPLGELQDVA  86
            +GR+ ++ + L+ A +PG  + ELC I++   +++L AEVVG+ GS  +L P+    ++ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKP---GEEL-AEVVGINGSKALLSPFTSTAGLH  77

Query  87   MGAEVISTGGSLKVRVGDALLGRVLDGLGEPMDGKGPIPNAVEVSVTARPPDPMKRQRVT  146
             G +V++     +V VG+ALLGRV+DG+G P+DG+  +P+       A PP +M RQ +T
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPIT  136

Query  147  RRFMTGVRAIDATLTVGEGQRVGVFAAAGVGKSTLLGMLARNTEAEVNVIALIGERGREV  206
            + +MTG+RAID+  T GEGQRVG+F+A+GVGKSTLL+ML    +A+ NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  207  RDFLEHDLGPEGLKRSVIVVATSNEPSLVRLKAAHVATAIAEYFRDQGKKVLLMMDSVTR  266
            R+F++  L+ E  KR VIVVATS+ P+L R++A  VAT+IAE+FRD+GK+V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  267  FARALREVGLATGEPPARAGFPPSVFSELPKLLERTGNSQRGSITAFYTVLVEGDDMTEP  326
            +ARA RE++LA+GE +  + +PP+VFS LP+LLERTG +++GSITAFYTVLVEGDDM EP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  327  IADETRSILDGHIILSRALAAAGHYPAIDVRHSVSRVMTAVADKDHIAKAMKLRDILDAY  386
            +ADE RS+LDGHI+LSR LA  GHYPAIDV  ++SRV   V+  +H   A  LR  L  Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  387  ESQKDLILIGAYKSGKDKRTDYAISKIDAVNQFLRQPTSEKADFQDTLNRLTKLVS  442
            +    LI IG Y+ G D  TD AI     +  FLRQ+  E  + +  +++L ++++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

146) ECH74115_5062 in NC_011353


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  331 bits (1243),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 205/402 (51%), Positives = 301/402 (75%), Gaps = 7/402 (1%)

Query  48   ARLPKARIGAFYKIEPSQRLAEVIAIDEDEVFLLPFEHVSGMYCGQWLSYQGDEFKIRVG  107
            A+LP   +G +  I P++ LAEV++I+    +L PF   +G+ CGQ +       ++ VG
Sbjct  35   AWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVG  94

Query  108  DALLGRLVDGIGRPMES-NIAAPYLPFERSLYAE-PPDPLLRQVIDQPFILGVRAIDGLL  165
            +ALLGR++DG+GRP+++ +++       +  Y   PP +++RQ I QP++ G+RAID++ 
Sbjct  95   EALLGRVIDGFGRPLDGRELPEVC----WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVA  150

Query  166  TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-LPQSTLS  224
            TCG GQR+GIF+++GVGKSTLL+M+CN++ AD  VL LIGERGREV EF+ + L++ T  
Sbjct  151  TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK  210

Query  225  KCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGE  284
            +CV+VV+TSDRPALER++A F ATTIAE+FRD+GK V+L+ DS+TRYARAAR+++LA+GE
Sbjct  211  RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE  270

Query  285  PDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV  344
              V G +PP+VFS+LP+LLER+G + KGSITA+YTVL+E+D++N+P++DEVRS+LDGHIV
Sbjct  271  TAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  345  LTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVELLIRIGEYTM  404
            L+R LAE  H+PAID+  + SRV   V + EH + AA  ++ +A Y++VELLIRIGEY  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  405  GQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKVVA  446
            G D ++DKAI     I  F++QS  ++ + E  IE L ++++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

147) escN in NC_002655


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  331 bits (1243),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 205/402 (51%), Positives = 301/402 (75%), Gaps = 7/402 (1%)

Query  48   ARLPKARIGAFYKIEPSQRLAEVIAIDEDEVFLLPFEHVSGMYCGQWLSYQGDEFKIRVG  107
            A+LP   +G +  I P++ LAEV++I+    +L PF   +G+ CGQ +       ++ VG
Sbjct  35   AWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVG  94

Query  108  DALLGRLVDGIGRPMES-NIAAPYLPFERSLYAE-PPDPLLRQVIDQPFILGVRAIDGLL  165
            +ALLGR++DG+GRP+++ +++       +  Y   PP +++RQ I QP++ G+RAID++ 
Sbjct  95   EALLGRVIDGFGRPLDGRELPEVC----WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVA  150

Query  166  TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-LPQSTLS  224
            TCG GQR+GIF+++GVGKSTLL+M+CN++ AD  VL LIGERGREV EF+ + L++ T  
Sbjct  151  TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK  210

Query  225  KCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGE  284
            +CV+VV+TSDRPALER++A F ATTIAE+FRD+GK V+L+ DS+TRYARAAR+++LA+GE
Sbjct  211  RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE  270

Query  285  PDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV  344
              V G +PP+VFS+LP+LLER+G + KGSITA+YTVL+E+D++N+P++DEVRS+LDGHIV
Sbjct  271  TAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  345  LTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVELLIRIGEYTM  404
            L+R LAE  H+PAID+  + SRV   V + EH + AA  ++ +A Y++VELLIRIGEY  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  405  GQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKVVA  446
            G D ++DKAI     I  F++QS  ++ + E  IE L ++++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

148) ECs4568 in NC_002695


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  331 bits (1243),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 205/402 (51%), Positives = 301/402 (75%), Gaps = 7/402 (1%)

Query  48   ARLPKARIGAFYKIEPSQRLAEVIAIDEDEVFLLPFEHVSGMYCGQWLSYQGDEFKIRVG  107
            A+LP   +G +  I P++ LAEV++I+    +L PF   +G+ CGQ +       ++ VG
Sbjct  35   AWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVG  94

Query  108  DALLGRLVDGIGRPMES-NIAAPYLPFERSLYAE-PPDPLLRQVIDQPFILGVRAIDGLL  165
            +ALLGR++DG+GRP+++ +++       +  Y   PP +++RQ I QP++ G+RAID++ 
Sbjct  95   EALLGRVIDGFGRPLDGRELPEVC----WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVA  150

Query  166  TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-LPQSTLS  224
            TCG GQR+GIF+++GVGKSTLL+M+CN++ AD  VL LIGERGREV EF+ + L++ T  
Sbjct  151  TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK  210

Query  225  KCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGE  284
            +CV+VV+TSDRPALER++A F ATTIAE+FRD+GK V+L+ DS+TRYARAAR+++LA+GE
Sbjct  211  RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE  270

Query  285  PDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV  344
              V G +PP+VFS+LP+LLER+G + KGSITA+YTVL+E+D++N+P++DEVRS+LDGHIV
Sbjct  271  TAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  345  LTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVELLIRIGEYTM  404
            L+R LAE  H+PAID+  + SRV   V + EH + AA  ++ +A Y++VELLIRIGEY  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  405  GQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKVVA  446
            G D ++DKAI     I  F++QS  ++ + E  IE L ++++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

149) escN in NC_013008


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  331 bits (1243),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 205/402 (51%), Positives = 301/402 (75%), Gaps = 7/402 (1%)

Query  48   ARLPKARIGAFYKIEPSQRLAEVIAIDEDEVFLLPFEHVSGMYCGQWLSYQGDEFKIRVG  107
            A+LP   +G +  I P++ LAEV++I+    +L PF   +G+ CGQ +       ++ VG
Sbjct  35   AWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVG  94

Query  108  DALLGRLVDGIGRPMES-NIAAPYLPFERSLYAE-PPDPLLRQVIDQPFILGVRAIDGLL  165
            +ALLGR++DG+GRP+++ +++       +  Y   PP +++RQ I QP++ G+RAID++ 
Sbjct  95   EALLGRVIDGFGRPLDGRELPEVC----WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVA  150

Query  166  TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-LPQSTLS  224
            TCG GQR+GIF+++GVGKSTLL+M+CN++ AD  VL LIGERGREV EF+ + L++ T  
Sbjct  151  TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK  210

Query  225  KCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGE  284
            +CV+VV+TSDRPALER++A F ATTIAE+FRD+GK V+L+ DS+TRYARAAR+++LA+GE
Sbjct  211  RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE  270

Query  285  PDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV  344
              V G +PP+VFS+LP+LLER+G + KGSITA+YTVL+E+D++N+P++DEVRS+LDGHIV
Sbjct  271  TAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  345  LTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVELLIRIGEYTM  404
            L+R LAE  H+PAID+  + SRV   V + EH + AA  ++ +A Y++VELLIRIGEY  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  405  GQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKVVA  446
            G D ++DKAI     I  F++QS  ++ + E  IE L ++++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

150) escN in NC_013941


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  331 bits (1243),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 205/402 (51%), Positives = 301/402 (75%), Gaps = 7/402 (1%)

Query  48   ARLPKARIGAFYKIEPSQRLAEVIAIDEDEVFLLPFEHVSGMYCGQWLSYQGDEFKIRVG  107
            A+LP   +G +  I P++ LAEV++I+    +L PF   +G+ CGQ +       ++ VG
Sbjct  35   AWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVG  94

Query  108  DALLGRLVDGIGRPMES-NIAAPYLPFERSLYAE-PPDPLLRQVIDQPFILGVRAIDGLL  165
            +ALLGR++DG+GRP+++ +++       +  Y   PP +++RQ I QP++ G+RAID++ 
Sbjct  95   EALLGRVIDGFGRPLDGRELPEVC----WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVA  150

Query  166  TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-LPQSTLS  224
            TCG GQR+GIF+++GVGKSTLL+M+CN++ AD  VL LIGERGREV EF+ + L++ T  
Sbjct  151  TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK  210

Query  225  KCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGE  284
            +CV+VV+TSDRPALER++A F ATTIAE+FRD+GK V+L+ DS+TRYARAAR+++LA+GE
Sbjct  211  RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE  270

Query  285  PDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV  344
              V G +PP+VFS+LP+LLER+G + KGSITA+YTVL+E+D++N+P++DEVRS+LDGHIV
Sbjct  271  TAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  345  LTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVELLIRIGEYTM  404
            L+R LAE  H+PAID+  + SRV   V + EH + AA  ++ +A Y++VELLIRIGEY  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  405  GQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKVVA  446
            G D ++DKAI     I  F++QS  ++ + E  IE L ++++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

151) ECO55CA74_21225 in NC_017656


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  331 bits (1243),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 205/402 (51%), Positives = 301/402 (75%), Gaps = 7/402 (1%)

Query  48   ARLPKARIGAFYKIEPSQRLAEVIAIDEDEVFLLPFEHVSGMYCGQWLSYQGDEFKIRVG  107
            A+LP   +G +  I P++ LAEV++I+    +L PF   +G+ CGQ +       ++ VG
Sbjct  35   AWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVG  94

Query  108  DALLGRLVDGIGRPMES-NIAAPYLPFERSLYAE-PPDPLLRQVIDQPFILGVRAIDGLL  165
            +ALLGR++DG+GRP+++ +++       +  Y   PP +++RQ I QP++ G+RAID++ 
Sbjct  95   EALLGRVIDGFGRPLDGRELPEVC----WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVA  150

Query  166  TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-LPQSTLS  224
            TCG GQR+GIF+++GVGKSTLL+M+CN++ AD  VL LIGERGREV EF+ + L++ T  
Sbjct  151  TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK  210

Query  225  KCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGE  284
            +CV+VV+TSDRPALER++A F ATTIAE+FRD+GK V+L+ DS+TRYARAAR+++LA+GE
Sbjct  211  RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE  270

Query  285  PDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV  344
              V G +PP+VFS+LP+LLER+G + KGSITA+YTVL+E+D++N+P++DEVRS+LDGHIV
Sbjct  271  TAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  345  LTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVELLIRIGEYTM  404
            L+R LAE  H+PAID+  + SRV   V + EH + AA  ++ +A Y++VELLIRIGEY  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  405  GQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKVVA  446
            G D ++DKAI     I  F++QS  ++ + E  IE L ++++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

152) CDCO157_4303 in NC_017906


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  331 bits (1243),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 205/402 (51%), Positives = 301/402 (75%), Gaps = 7/402 (1%)

Query  48   ARLPKARIGAFYKIEPSQRLAEVIAIDEDEVFLLPFEHVSGMYCGQWLSYQGDEFKIRVG  107
            A+LP   +G +  I P++ LAEV++I+    +L PF   +G+ CGQ +       ++ VG
Sbjct  35   AWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVG  94

Query  108  DALLGRLVDGIGRPMES-NIAAPYLPFERSLYAE-PPDPLLRQVIDQPFILGVRAIDGLL  165
            +ALLGR++DG+GRP+++ +++       +  Y   PP +++RQ I QP++ G+RAID++ 
Sbjct  95   EALLGRVIDGFGRPLDGRELPEVC----WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVA  150

Query  166  TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-LPQSTLS  224
            TCG GQR+GIF+++GVGKSTLL+M+CN++ AD  VL LIGERGREV EF+ + L++ T  
Sbjct  151  TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK  210

Query  225  KCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGE  284
            +CV+VV+TSDRPALER++A F ATTIAE+FRD+GK V+L+ DS+TRYARAAR+++LA+GE
Sbjct  211  RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE  270

Query  285  PDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV  344
              V G +PP+VFS+LP+LLER+G + KGSITA+YTVL+E+D++N+P++DEVRS+LDGHIV
Sbjct  271  TAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  345  LTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVELLIRIGEYTM  404
            L+R LAE  H+PAID+  + SRV   V + EH + AA  ++ +A Y++VELLIRIGEY  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  405  GQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKVVA  446
            G D ++DKAI     I  F++QS  ++ + E  IE L ++++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

153) hrcN in NC_017271


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  330 bits (1239),  Expect = 9e-92, Method: Compositional matrix adjust.
 Identities = 210/418 (51%), Positives = 309/418 (74%), Gaps = 5/418 (1%)

Query  20   RYGKVVEVIGTMLKVAGAQVSLGEVCELRQRDGTLLQRAEVVGFSRTLALLAPFGELVGL  79
            R G++ +V +T+L+   + V +GE+C ++  +    + AEVVG++ + ALL+PF    GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  80   SRQTRVIGLGRPLAVPVGSALLGRVLDGLGEPADGQGPLAGDDWVQIQAQAPDPMRRRLI  139
                +V++L R   VPVG ALLGRV+DG+G P DG+  L+   W + +A +P +M R+ I
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPI  135

Query  140  EQPLPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGRE  199
             QPL TG+R +D++ T GEGQR+GIF+A+GVGKSTL++M+  + + D NV+VLIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  200  VREFIEMILGPDGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGMRVLLMMDSLT  259
            VREFI+  L+ +   R V+V ATSDR+++ER +A +V+T+IAE+FRD G RV+L+ DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  260  RFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGETGSITAFYTVLAEDDTGSD  319
            R+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GMGE GSITAFYTVL E+D  ++
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  320  PIAEEVRGILDGHLILSREIAARNQYPAIDVLGSLSRVMSQIVSAEQRQYAGQLRRLLAK  379
            P+A+EVR++LDGH++LSR +A R +YPAIDVL++LSRV + + S E+RQ A+ LRR LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  HNEVETLLQVGEYRHGSdavadeaiaridairdFLSQPTDQLSDYDTILEQLAGVIDD  437
             +EVE L+++GEY++G D+ +D AI     I  FL Q+ D++ + + ++E+L  ++ +
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

154) hrcN in NC_010688


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  329 bits (1235),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 210/418 (51%), Positives = 308/418 (74%), Gaps = 5/418 (1%)

Query  20   RYGKVVEVIGTMLKVAGVQVSLGEVCELRQRDGTLLQRAEVVGFSRTLALLAPFGELVGL  79
            R G++ +V +T+L+     V +GE+C ++  +    + AEVVG++ + ALL+PF    GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  80   SRQTRVIGLGRPLAVPVGSALLGRVLDGLGEPADGQGPLAGDDWVQIQAQAPDPMRRRLI  139
                +V++L R   VPVG ALLGRV+DG+G P DG+  L+   W + +A +P +M R+ I
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPI  135

Query  140  EQPLPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGRE  199
             QPL TG+R +D++ T GEGQR+GIF+A+GVGKSTL++M+  + + D NV+VLIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  200  VREFIEMILGPDGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGMRVLLMMDSLT  259
            VREFI+  L+ +   R V+V ATSDR+++ER +A +V+T+IAE+FRD G RV+L+ DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  260  RFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGETGSITAFYTVLAEDDTGSD  319
            R+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GMGE GSITAFYTVL E+D  ++
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  320  PIAEEVRGILDGHLILSREIAARNQYPAIDVLGSLSRVMSQIVSAEQRQYAGQLRRLLAK  379
            P+A+EVR++LDGH++LSR +A R +YPAIDVL++LSRV + + S E+RQ A+ LRR LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  HNEVETLLQVGEYRHGSdavadeaiaridairdFLSQPTDQLSDYDTILEQLAGVIDD  437
             +EVE L+++GEY++G D+ +D AI     I  FL Q+ D++ + + ++E+L  ++ +
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

155) fliI in NC_009706


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 195/390 (50%), Positives = 289/390 (75%), Gaps = 3/390 (0%)

Query  41   FVGEVCNVYSEENGNIACEVVGFKEKDVILMPLGELIGISPGCRVVPGRRPLSVKCSEEL  100
            F+GE+C + + E+     EVVG++    +L P+    G+  G +V++ RR   V  +E L
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  101  FGKVLDGLGNPLGEDEISSGVLYELDAEPPDPLKRKRIKQVISTGIRAIDGFLTCGEGQR  160
            +G+V+DG+G PL+  E++     + DA PP ++ R+ I Q + TGIRAID+  TCGEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  161  IGIFAGSGVGKSTTLGMIARYAEADVNVIALIGERGREVRDFIEKDLGEEGLKKSIIVCA  220
            +GIF+++GVGKST L+M+   ++AD NV+ LIGERGREVR+FI+  L+EE  K+ +IV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  221  TSDKPALVRLKGAFTATAIAEYFRDKGKKVILMMDSVTRFAMAQREIGLAVGEPPATKGY  280
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A REI+LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  281  TPSVFAKLPRLMERSGMSDKGSITAFYTVLVDGDDLNEPIADAVRGILDGHIVLSRSLAN  340
             P+VF+ LPRL+ER+GM++KGSITAFYTVLV+GDD+NEP+AD VR++LDGHIVLSR LA+
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  341  KNHYPAIDVLSSISRLMSEITEKSHKKSASFARDMLSVYKNSEDLINIGAYIRGNNPNID  400
            + HYPAIDVL+++SR+ + +T   H++ A++ R  L++Y++ E LI IG Y RG + + D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  401  MAINYYDGIINYLKQNMDEYSSFDNSINRL  430
             AI+ Y +I  +L+Q+ DE  + +  I++L
Sbjct  398  KAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

156) CKR_1054 in NC_011837


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 195/390 (50%), Positives = 289/390 (75%), Gaps = 3/390 (0%)

Query  41   FVGEVCNVYSEENGNIACEVVGFKEKDVILMPLGELIGISPGCRVVPGRRPLSVKCSEEL  100
            F+GE+C + + E+     EVVG++    +L P+    G+  G +V++ RR   V  +E L
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  101  FGKVLDGLGNPLGEDEISSGVLYELDAEPPDPLKRKRIKQVISTGIRAIDGFLTCGEGQR  160
            +G+V+DG+G PL+  E++     + DA PP ++ R+ I Q + TGIRAID+  TCGEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  161  IGIFAGSGVGKSTTLGMIARYAEADVNVIALIGERGREVRDFIEKDLGEEGLKKSIIVCA  220
            +GIF+++GVGKST L+M+   ++AD NV+ LIGERGREVR+FI+  L+EE  K+ +IV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  221  TSDKPALVRLKGAFTATAIAEYFRDKGKKVILMMDSVTRFAMAQREIGLAVGEPPATKGY  280
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A REI+LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  281  TPSVFAKLPRLMERSGMSDKGSITAFYTVLVDGDDLNEPIADAVRGILDGHIVLSRSLAN  340
             P+VF+ LPRL+ER+GM++KGSITAFYTVLV+GDD+NEP+AD VR++LDGHIVLSR LA+
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  341  KNHYPAIDVLSSISRLMSEITEKSHKKSASFARDMLSVYKNSEDLINIGAYIRGNNPNID  400
            + HYPAIDVL+++SR+ + +T   H++ A++ R  L++Y++ E LI IG Y RG + + D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  401  MAINYYDGIINYLKQNMDEYSSFDNSINRL  430
             AI+ Y +I  +L+Q+ DE  + +  I++L
Sbjct  398  KAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

157) XC_3006 in NC_007086


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  328 bits (1232),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 210/418 (51%), Positives = 308/418 (74%), Gaps = 5/418 (1%)

Query  24   RYGKVVEVIGTMLKVAGVQVSLGEVCELRQRDGTLLQRAEVVGFSRTLALLAPFGELVGL  83
            R G++ +V +T+L+     V +GE+C ++  +    + AEVVG++ + ALL+PF    GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  84   SRQTRVIGLGRPLAVPVGSALLGRVLDGLGEPADGQGPLAGDDWVQIQAQAPDPMRRRLI  143
                +V++L R   VPVG ALLGRV+DG+G P DG+  L+   W + +A +P +M R+ I
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPI  135

Query  144  EQPLPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLIGMFARGTQCDVNVIVLIGERGRE  203
             QPL TG+R +D++ T GEGQR+GIF+A+GVGKSTL++M+  + + D NV+VLIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  204  VREFIEMILGPDGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGMRVLLMMDSLT  263
            VREFI+  L+ +   R V+V ATSDR+++ER +A +V+T+IAE+FRD G RV+L+ DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  264  RFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGETGSITAFYTVLAEDDTGSD  323
            R+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GMGE GSITAFYTVL E+D  ++
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  324  PIAEEVRGILDGHLILSREIAARNQYPAIDVLGSLSRVMSQIVSAEQRQYAGQLRRLLAK  383
            P+A+EVR++LDGH++LSR +A R +YPAIDVL++LSRV + + S E+RQ A+ LRR LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  384  HNEVETLLQVGEYRHGSdavadeaiaridairdFLSQPTDQLSDYDTILEQLAGVIDD  441
             +EVE L+++GEY++G D+ +D AI     I  FL Q+ D++ + + ++E+L  ++ +
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

158) hrcN in NC_003902


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  328 bits (1232),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 210/418 (51%), Positives = 308/418 (74%), Gaps = 5/418 (1%)

Query  24   RYGKVVEVIGTMLKVAGVQVSLGEVCELRQRDGTLLQRAEVVGFSRTLALLAPFGELVGL  83
            R G++ +V +T+L+     V +GE+C ++  +    + AEVVG++ + ALL+PF    GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  84   SRQTRVIGLGRPLAVPVGSALLGRVLDGLGEPADGQGPLAGDDWVQIQAQAPDPMRRRLI  143
                +V++L R   VPVG ALLGRV+DG+G P DG+  L+   W + +A +P +M R+ I
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPI  135

Query  144  EQPLPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLIGMFARGTQCDVNVIVLIGERGRE  203
             QPL TG+R +D++ T GEGQR+GIF+A+GVGKSTL++M+  + + D NV+VLIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  204  VREFIEMILGPDGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGMRVLLMMDSLT  263
            VREFI+  L+ +   R V+V ATSDR+++ER +A +V+T+IAE+FRD G RV+L+ DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  264  RFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGETGSITAFYTVLAEDDTGSD  323
            R+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GMGE GSITAFYTVL E+D  ++
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  324  PIAEEVRGILDGHLILSREIAARNQYPAIDVLGSLSRVMSQIVSAEQRQYAGQLRRLLAK  383
            P+A+EVR++LDGH++LSR +A R +YPAIDVL++LSRV + + S E+RQ A+ LRR LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  384  HNEVETLLQVGEYRHGSdavadeaiaridairdFLSQPTDQLSDYDTILEQLAGVIDD  441
             +EVE L+++GEY++G D+ +D AI     I  FL Q+ D++ + + ++E+L  ++ +
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

159) EAT1b_2917 in NC_012673


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  328 bits (1230),  Expect = 5e-91, Method: Compositional matrix adjust.
 Identities = 204/424 (49%), Positives = 302/424 (72%), Gaps = 4/424 (0%)

Query  11   IKQSTDGEFTRKIGRVCRVIGLMIESNGPSAFVGERCLIVLPSNETVEAEVVGFNEERVL  70
            +K +  + + R  GR+  V + ++++  P+ F+GE C  + P++E   AEVVG+N  + L
Sbjct  11   LKYPPPDGYCRW-GRIQDVSATLLNAWLPGVFMGELC-CIKPGEEL--AEVVGINGSKAL  66

Query  71   LMPYGETTQIAPGCLVKGTGKMLQVPVGEELIGQVLDGLGRPLSGERLVTGKRYDVQRKP  130
            L P+  T+ +  G  V +  +  QVPVGE L+G+V+DG+GRPL G  L    + D +  P
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  131  PNPLNRPRILDALSTGVRMIDGLLTVGKGQRVGLFAGSGVGKSTLLGMIAKRSSADINVI  190
            P ++ R  I ++L TG+R ID++ T G GQRVG+F+++GVGKSTLL+M+ + + AD NV+
Sbjct  127  PPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  191  ALIGERGREVKEFIEKELGPEGMARSVVIVATSDQPPLVRLKGAYTATAIAEYFRDQGKE  250
             LIGERGREV+EFI+  L+ E   R V++VATSD+P+L R+++ + AT+IAE+FRD+GK 
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  251  VVLMMDSVTRFAMAQREIGLATGEPPTSKGYTPSVFAMLPQLLERSGTAATGSITAFYTV  310
            VVL+ DS+TR+A A REI+LA+GE + S  Y P+VF+ LP+LLER+G +  GSITAFYTV
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTV  306

Query  311  LVDGDDMNEPIADAVRGILDGHFVMDRALANRGQFPAIHVLKSISRVMNQIASPEHKEAA  370
            LV+GDDMNEP+AD VR++LDGH+V+ R LA+RG++PAI+VL ++SRV   ++S EH++ A
Sbjct  307  LVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLA  366

Query  371  QTFRSWLATYIDAEDLINIGAYKKGTNPAIDTAVDKYPYLLTFLKQSIEEDAAFEQTMTH  430
              +R +LA Y + E LI IG Y++G +   D A+D YP + TFL+QS +E  + E  +  
Sbjct  367  AILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEK  426

Query  431  LSHI  434
            L +I
Sbjct  427  LHQI  430

160) Adeg_2041 in NC_013385


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  328 bits (1229),  Expect = 6e-91, Method: Compositional matrix adjust.
 Identities = 203/379 (54%), Positives = 277/379 (74%), Gaps = 3/379 (0%)

Query  39   FVGEVCLVELSPGKYVVAEAAGFREDVVLLMPFGELTGIRPGCRVYPRRRPFTVRVGEHL  98
            F+GE+C +   PG   +AE  G+     LL PF   +G++ G +V + RR   V VGE L
Sbjct  41   FMGELCCI--KPGE-ELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  99   LGRVLNGLGEPIDGKPLPSGIPLPVNNRPPSPLARRRIEEVFVTGVRAIDAFITCGRGQR  158
            LGRV++G+G P+DG+ LP       +  PP+++ R+ I + ++TG+RAID+  TCG GQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  159  IGIFAGSGVGKSTLLGMIARFGNADVNVIALVGERGREVLEFIEKDLGEEGLAKSVVVVA  218
            +GIF+++GVGKSTLL+M+    +AD NV+ L+GERGREV EFI+  L+EE   + V+VVA
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  219  TSDEPALLRLRAAFVATTIAEYFRDTGRHVLLLMDSLTRFALAQREVGLAVGEPPTTRGY  278
            TSD PAL R+RA FVATTIAE+FRD G++V+LL DSLTR+A A RE++LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  279  TPSVFALLPRLLERAGNAAKGSITGFYTVLVEGDDLNEPITDAARSILDGHIVLSRQLAQ  338
             P+VF+ LPRLLER+G + KGSIT+FYTVLVEGDD+NEP++D  RS+LDGHIVLSR+LA+
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  339  ANHYPAIDVLASVSRLMSAVVTPEHREAADLLRSLLAAYRQNEDLINIGAYVSGSNPTVD  398
              HYPAIDVLA++SR+ + V + EHR+ A +LR  LA Y++ E LI IG Y  G +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  399  RAIALYPELVAFLRQKPEE  417
            +AI  YP++ +FLRQ  +E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

161) Desku_1782 in NC_015573


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  328 bits (1229),  Expect = 6e-91, Method: Compositional matrix adjust.
 Identities = 211/393 (54%), Positives = 281/393 (72%), Gaps = 5/393 (1%)

Query  44   IGEICDIHVPGEAPVVTEVVGFREDVTLLMPLGELRGIFPGCSVVPRGRGLSVAVGEHLL  103
            +GE+C I  PGE   ++EVVG+    +LL P+    G+  G  V++  R   V+VGE LL
Sbjct  42   MGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  104  GRVLDGLGRPMDGRELIAPDQCYVPVDNSPPNPLSRQRITQIFSTGVRAIDAFLTCGRGQ  163
            GRV+DG+GRP+DGREL  P+ C    D  PP ++ RQ ITQ + TG+RAID+  TCG GQ
Sbjct  99   GRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  164  RLGIFAGSGVGKSTLLGMVARYSSADVNVIALVGERGREVRDFIEGDLGPEGLARSVVVA  223
            R+GIF+++GVGKSTLL+M+   + AD NV+ L+GERGREVR+FI+  L+ E   R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  224  ATSDQPALVRVKAAFLASAIAEYFRDRGKDVLLLMDSITRFAMAQREVGLAIGEPPATRG  283
            ATSD+PAL RV+A F+A++IAE+FRD GK V+LL DS+TR+A A RE++LA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  284  YTPSVFALLPRLLERSGMGATGSITAFYTVLVEGDDLNEPITDAVRGILDGHIVLSREMA  343
            Y P+VF+ LPRLLER+GMG  GSITAFYTVLVEGDD+NEP++D VR++LDGHIVLSR +A
Sbjct  277  YPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  344  AQNHYPAIDVLQSVSRVMPEIVDAEHLTRAGRLRDLLATYRQSEDLINIGAYVAGTNPQV  403
             + HYPAIDVL ++SRV P +   EH   A+ LR  LA Y++ E LI IG Y  G + + 
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  404  DAAVKAYPRIVQFLRQDMHEYSSFEETMETLPD  436
            D A+ +YP I  FLRQ  +E  + E  +E L +
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

162) ETAC_04210 in NC_020796


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  327 bits (1228),  Expect = 8e-91, Method: Compositional matrix adjust.
 Identities = 224/397 (57%), Positives = 294/397 (75%), Gaps = 4/397 (1%)

Query  28   GRLLTVGATLLRAHLPGVGLGEQCTL-PDGSPAEVVAIEGDQALLSPYHAPLGLANGMLV  86
            GR+  V+ATLL A LPGV +GE C + P+   AEVV+I+G +ALLSP+ +  GL  G  V
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQV  82

Query  87   TPSGAQARIGVGEALLGRVIDALGQPMDGCAPPQAAQWRSLESPAPDPMQRAPIDTLLPM  146
             +   + ++ VGEALLGRVID++G+P+DG   P+   W+  ++ +P +M R PI   L  
Sbjct  83   MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-WKDYDAMPPPAMVRQPITQPLMT  141

Query  147  GVRAIDAALSVGVGQRLGIFSPAGCGKSTLLGMLAAHSQVDVVVLALIGERGREVREFIE  206
            G+RAID+  + G GQR+GIFS++G GKSTLL+ML   ++ D  VL LIGERGREVREFI+
Sbjct  142  GIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFID  201

Query  207  QIMSPELRARSVVILATSDRPALERIKAADTATVIAEYFRDRGHHVLLLVDSLTRYARAI  266
              +S E R R V+++ATSDRPALER++A   AT IAE+FRD G +V+LL DSLTRYARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  267  REIALAAGEPMVSGGYPPSLYARLPRLLERAGPAACGSITAFYTVLVE--QKSDPLAEEV  324
            REIALAAGE  VSG YPP++++ LPRLLER+G +  GSITAFYTVLVE  + ++PLA+EV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  325  RSLLDGHIVLSRRLAEASHYPAIDILASISRVMSQVVTPQHRQAANRLRHLLATWQEIAL  384
            RSLLDGHIVLSRRLAE +HYPAID+LA++SRV + V + +HRQ A  LR+ LA  QE+ L
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  385  LVRVGEYragqdadaddamarreaiaSLLCQQTDERC  421
            L+R+GEY+ G D+D+D A+     I ++L Q  DE C
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

163) esaN in NC_013508


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  327 bits (1228),  Expect = 8e-91, Method: Compositional matrix adjust.
 Identities = 224/397 (57%), Positives = 294/397 (75%), Gaps = 4/397 (1%)

Query  28   GRLLTVGATLLRAHLPGVGLGEQCTL-PDGSPAEVVAIEGDQALLSPYHAPLGLANGMLV  86
            GR+  V+ATLL A LPGV +GE C + P+   AEVV+I+G +ALLSP+ +  GL  G  V
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQV  82

Query  87   TPSGAQARIGVGEALLGRVIDALGQPMDGCAPPQAAQWRSLESPAPDPMQRAPIDTLLPM  146
             +   + ++ VGEALLGRVID++G+P+DG   P+   W+  ++ +P +M R PI   L  
Sbjct  83   MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-WKDYDAMPPPAMVRQPITQPLMT  141

Query  147  GVRAIDAALSVGVGQRLGIFSPAGCGKSTLLGMLAAHSQVDVVVLALIGERGREVREFIE  206
            G+RAID+  + G GQR+GIFS++G GKSTLL+ML   ++ D  VL LIGERGREVREFI+
Sbjct  142  GIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFID  201

Query  207  QIMSPELRARSVVILATSDRPALERIKAADTATVIAEYFRDRGHHVLLLVDSLTRYARAI  266
              +S E R R V+++ATSDRPALER++A   AT IAE+FRD G +V+LL DSLTRYARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  267  REIALAAGEPMVSGGYPPSLYARLPRLLERAGPAACGSITAFYTVLVE--QKSDPLAEEV  324
            REIALAAGE  VSG YPP++++ LPRLLER+G +  GSITAFYTVLVE  + ++PLA+EV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  325  RSLLDGHIVLSRRLAEASHYPAIDILASISRVMSQVVTPQHRQAANRLRHLLATWQEIAL  384
            RSLLDGHIVLSRRLAE +HYPAID+LA++SRV + V + +HRQ A  LR+ LA  QE+ L
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  385  LVRVGEYragqdadaddamarreaiaSLLCQQTDERC  421
            L+R+GEY+ G D+D+D A+     I ++L Q  DE C
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

164) esaN in NC_017309


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  327 bits (1228),  Expect = 8e-91, Method: Compositional matrix adjust.
 Identities = 224/397 (57%), Positives = 294/397 (75%), Gaps = 4/397 (1%)

Query  28   GRLLTVGATLLRAHLPGVGLGEQCTL-PDGSPAEVVAIEGDQALLSPYHAPLGLANGMLV  86
            GR+  V+ATLL A LPGV +GE C + P+   AEVV+I+G +ALLSP+ +  GL  G  V
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQV  82

Query  87   TPSGAQARIGVGEALLGRVIDALGQPMDGCAPPQAAQWRSLESPAPDPMQRAPIDTLLPM  146
             +   + ++ VGEALLGRVID++G+P+DG   P+   W+  ++ +P +M R PI   L  
Sbjct  83   MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-WKDYDAMPPPAMVRQPITQPLMT  141

Query  147  GVRAIDAALSVGVGQRLGIFSPAGCGKSTLLGMLAAHSQVDVVVLALIGERGREVREFIE  206
            G+RAID+  + G GQR+GIFS++G GKSTLL+ML   ++ D  VL LIGERGREVREFI+
Sbjct  142  GIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFID  201

Query  207  QIMSPELRARSVVILATSDRPALERIKAADTATVIAEYFRDRGHHVLLLVDSLTRYARAI  266
              +S E R R V+++ATSDRPALER++A   AT IAE+FRD G +V+LL DSLTRYARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  267  REIALAAGEPMVSGGYPPSLYARLPRLLERAGPAACGSITAFYTVLVE--QKSDPLAEEV  324
            REIALAAGE  VSG YPP++++ LPRLLER+G +  GSITAFYTVLVE  + ++PLA+EV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  325  RSLLDGHIVLSRRLAEASHYPAIDILASISRVMSQVVTPQHRQAANRLRHLLATWQEIAL  384
            RSLLDGHIVLSRRLAE +HYPAID+LA++SRV + V + +HRQ A  LR+ LA  QE+ L
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  385  LVRVGEYragqdadaddamarreaiaSLLCQQTDERC  421
            L+R+GEY+ G D+D+D A+     I ++L Q  DE C
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

165) sctN in NC_014225


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  327 bits (1227),  Expect = 8e-91, Method: Compositional matrix adjust.
 Identities = 203/402 (51%), Positives = 293/402 (73%), Gaps = 5/402 (1%)

Query  24   GRITETVGMLIKAVVPQVKIGEVCLIKREGEPLRAEVVGFTRDEVFLSPLGEMTGIGPSS  83
            GRI +  + L++A +P V +GE+C IK  GE L AEVVG+     +LSP+   +G+  + 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL-AEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  84   EVIPTRLPLHVKVGDALLGRVLNGLGEPLDTNTKGPLVLNETAPVIQSPPDPLKRQRVSE  143
            +V++ R   +V VG+ALLGRV++G+G PLD      +  ++  ++   PP ++ RQ +++
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQ  137

Query  144  PISVGVRVIDGTLTTGLGQRVGIFAAAGGGKSTLLGMIARNADADINVISLVGERGRELR  203
            P+  G+R ID+  T G GQRVGIF+A+G GKSTLL+M+   +DAD NV+ L+GERGRE+R
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  204  DFIEKDLGPEGLKKSVLVISTSDQSAQLRLNAAYVATAIAEYFRDKGKSVILMMDSVTRF  263
            +FI+  L+ E  K+ V+V++TSD++A  R+ A +VAT+IAE+FRD+GK V+L+ DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  264  ARAIREVGLAAGEPPARAGYTPSVFSTLPKLLERSGRSDVGSITAFYTILVAGDDMNEPV  323
            ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++ GSITAFYT+LV GDDMNEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  324  ADEVRSILDGHIILSAELAHKYHYPAVDVLASKSRVMQTIVSEEHLSLAGKINEVLANYK  383
            ADEVRS+LDGHI+LS  LA++ HYPA+DVLA+ SRV   + S+EH  LA+ +   LA Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  384  KNELLIKIGEYKRGSDKAGDFAIDHIDKVNNFLKQGIEEECS  425
              ELLI+IGEY+RG D   D AID    +  FL+Q+ +E C+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

166) FliI in NC_003869


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  327 bits (1227),  Expect = 9e-91, Method: Compositional matrix adjust.
 Identities = 205/407 (51%), Positives = 291/407 (72%), Gaps = 8/407 (1%)

Query  20   GY--YGKVSQVIGLTIESVGPLSNIGEICYIKTIDGNEVLAEVVGFKEEKVYLMPLGNME  77
            GY   G++ +V +  +++  P   +GE+C IK     E LAEVVG++  K  L P+ +  
Sbjct  18   GYCRWGRIQDVSATLLNAWLPGVFMGELCCIKP---GEELAEVVGINGSKALLSPFTSTA  74

Query  78   GIGPGSKVIATGQTLKVNVGKSLLGRVLDGLGNPIDGKG-PLKYEKSIPVNNTPPDPLER  136
            G+  G +V+A  +  +V VG +LLGRV+DG+G P+DG+  P    K    +  PP ++ R
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVR  132

Query  137  KRIREVMPLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKADLNVIALIGER  196
            + I + +  GI+AID++ TCG GQR+GIF+++GVGKSTLL+M+   + AD NV+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  197  GREVNEFIEKDLGEEGLKRSVVVVATSDTPALVRVKGAMTATAIAEYFRDQGLDVLLMMD  256
            GREV EFI+  L+EE  KR V+VVATSD PAL RV++   AT+IAE+FRD+G  V+L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  257  SITRFAMAQREIGLSIGEAPVSRGYTPSVFSVLPKLLERSGSSQKGSITALYTVLVDGDD  316
            S+TR+A A REI+L+ GE++VS  Y P+VFS LP+LLER+G ++KGSITA+YTVLV+GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  317  LNEPIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVINDIITDEHKELVAKFKNI  376
            +NEP+AD VR++LDGHIVLSR+LA++ HYPAIDVLA++SRV+  + ++EH++L A ++  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  377  LATYAEAEDLINIGAYNFGTNPKIDEAIELNEKMNSFLRQKIDEAYD  423
            LA Y E E LI IG Y+ G +   D AI+    + +FLRQ  DE  +
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

167) Acear_1643 in NC_014378


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  326 bits (1223),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 201/416 (49%), Positives = 299/416 (72%), Gaps = 7/416 (1%)

Query  23   NFGKISQVVGLIIESEGPDVTLGEICLIKSDSNSEPIQAEVVGFRDNKVLLMPLGEMGGI  82
              G+I +V + ++++  P+V +GE+C IK++ +     AEVVG+ ++K LL P+   +G+
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGL  76

Query  83   GPGCKVEATNEPLKVKVGDELLGHVLDGLGNPLTDLDLDQL-HKEYSVNNPPPNPLVRQR  141
              G +V A     +V VG+ LLG+V+DG+G PL + +L ++  K+Y  +  PP ++VRQ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQP  134

Query  142  ITEPLSVGIRSIDGLLTCGRGQRLGIFAGSGVGKSTLLGMIARNTAADVNVIGLIGERGR  201
            IT+PL  GIR+ID++ TCG GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  202  EVREFIEDDLGTEGLKRSVVVVATSDQPALVRLKGALVTTTIAEYFRDQGQDVMLMMDSI  261
            EVREFI+  L+ E  KR V+VVATSD+PAL R+++ +V+TTIAE+FRD+G+ V+L+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  262  TRFARAQREVGLAVGEPPATRGYTPSVFAMLPKLLERAGNNEVGTITGLYNVLVEGDDMN  321
            TR+ARA RE++LA GE + +  Y P+VF+ LP+LLER+G  E G+IT++Y VLVEGDDMN
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  322  EPIADAVRGIVDGHITLSRDLATQNHYPAVDVLESVSRVMDDVVTEEHQTAAQQLREVLA  381
            EP+AD VR+++DGHI LSR LA + HYPA+DVL ++SRV   V ++EH+  A  LR  LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  382  TYEESKDLVNIGAYEEGNNPELDYALSKLDEVNDFLQQGVEEKSDFETTLQQLKNI  437
             Y+E   L+ IG Y+ G + + D A+    ++  FL+Q+ +E  + E  +++L +I
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

168) fliI in NC_020410


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  326 bits (1222),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 194/408 (48%), Positives = 294/408 (73%), Gaps = 6/408 (1%)

Query  12   TADPYKRYGKVKRVIGLMIESKGPESSIGDVCLIYPKGHAKKAIKAEVVGFQDENILLMP  71
             +D Y R G+++ V + ++++  P   +G++C I P  +      AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSP  69

Query  72   YLEAASIAPGSIVEATGESLRIKVGAGLIGQVVDAFGEPLDGRALPKGLSPVSTEQpppn  131
            +  +A++  G  V A     ++ VG +L+G+V+D+FG PLDGR LP  +     +  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  132  pmkrppIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNIIAL  191
            +M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD N++ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  VGERGREVREFIEKDLGEEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGRNVM  251
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  FMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEQGTITAFYTVLV  311
            ++ DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E+G+ITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISDTAHKEAANK  371
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++   H++ A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  FRDLLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTEE  419
            +R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ +E
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

169) Toce_1098 in NC_014377


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  325 bits (1221),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 203/401 (51%), Positives = 285/401 (72%), Gaps = 7/401 (1%)

Query  22   RGKISKIVGLTIESKGPPAEIGEICRIKASREPKKLLAEVVGFRDDTLILMPLGDMEGIG  81
            +G+I  + +  +++  P   +GE+C IK++ E    LAEVVG+ +   +L P+    G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  82   PGDEVEATGKKLTVPVGEQLLGRILDGLGTPIDGKG-PVKSHIHYPLFNSPPNPVERAPI  140
             G++V A  ++  VPVGE LLGR++DG+G P+DG+  P     +Y     PP ++ R PI
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPI  135

Query  141  TSPLPLGIKVIDTLLTCGRGQRVGIFAGSGVGKSTLLGMIARNTKADVNVIALIGERGRE  200
            T PL  GI+ ID++ TCG GQRVGIF+++GVGKSTLL+M+     AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  LNSFLMKDLGEEGLKRSVVVVATSDKSPLIRTKAAFTATAIAEYFRDQGLDVMLMMDSVT  260
            +  F+   L+EE  KR V+VVATSD+++L R +A F AT+IAE+FRD+G  V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RFAMAQREVGLAAGEPPVTKGYTPSVFAILPKLLERAGTSSAGSITGIYTVLVEGDDLNE  320
            R+A A RE++LAAGE +V+  Y P+VF+ LP+LLER+G +  GSIT++YTVLVEGDD+NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  321  PISDTVRGILDGHIVLSRTLANRNHYPAIDVLASISRLMNDVISDEHRKLAAKVKSLISI  380
            P++D VR++LDGHIVLSR LA+R HYPAIDVLA++SR+   V S+EHR+LAA ++  +++
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  381  YNEAEDLINIGAYVRGSNPKIDEALKYIDDIRNFLVQEVDE  421
            Y+E E LI IG Y RG +   D A+    DI  FL Q  DE
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

170) fliI in NC_020210


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  325 bits (1221),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 205/419 (49%), Positives = 292/419 (70%), Gaps = 5/419 (1%)

Query  2    YKRFGKVSRVIGLMMESKGPKSSIGDLCYIHEQSGCRKIPAEVVGFHEQHVLLMPFSATT  61
            Y R G++  V + ++++  P   +G+LC I          AEVVG++    LL PF++T+
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTA  74

Query  62   HIAPGCFVEATGRPLEVHVGDALIGMVLDPLGQPLDGSPLPPGLKPVSVERDPPNPLVRP  121
             +  G  V A  R  +V VG+AL+G V+D +G+PLDG  LP  +     +  PP ++VR 
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPAMVRQ  133

Query  122  PIVEPLEVGIRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARHTSADVNVIALIGERG  181
            PI +PL  GIR IDS+ + G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  182  REVREFLERDLGPDGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDS  241
            REVREF++  L+ +   R V+VVATSD+PAL RV++ + AT+IAE+FRD+G  V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  242  VTRVAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDM  301
            +TR A A REI+LA GE + +  Y P+VF+ LP+LLER+G    G+ITAFYTVLV+GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  302  NEPIADAVRGILDGHFVLERQLANKGHYPAINVLKSVSRVMPHMISAEHREAANRFRRLL  361
            NEP+AD VR++LDGH+VL R+LA++GHYPAI+VL ++SRV P + S EHR+ A  +RR L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  362  STYIDSEDLIQIGAYKRGSSQEIDEAIEFYPQMMAFCRQNIDEKTTRAESIDRLLRLLS  420
            + Y + E LI+IG Y+RG   + D AI+ YP++ +F RQ+ DE       I++L ++L+
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

171) Cthe_0468 in NC_009012


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  325 bits (1221),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 198/415 (48%), Positives = 297/415 (72%), Gaps = 7/415 (1%)

Query  23   GKVSKVVGLTIESNGPEVNIGEICKINALRENKVISAEAVGFRDNKVLLMPLGDMNGIGP  82
            G++  V +  +++  P V +GE+C I++   + +  AE VG+ ++K LL P+    G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKP--GEEL--AEVVGINGSKALLSPFTSTAGLHC  78

Query  83   GSKVVATRDYLSVGVGNALIGRVIDGMGRPIDGKG-EIVTETTYPVENKPPHPLKRNRIK  141
            G +V+A R    V VG+AL+GRVIDG GRP+DG+    V    Y  +  PP ++ R+ I 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPIT  136

Query  142  EPLPLGVKTIDGLLTVGKGQRVGIFAGSGVGKSTLIGMIARNTKADVNVIALIGERGREV  201
            +PL  G+++ID++ T G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  202  REFIEKDLKEEGLKRSVVVVATSDQPALIRLKGALMATAIAEYFRDQGKDVLLLMDSLTR  261
            REFI+  L EE  KR V+VVATSD+PAL R+++ ++AT+IAE+FRD+GK V+LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  262  FAMAQREIGLSIGEPPVSRGYTPSVFSIMPKLLERAGNSQSGSITGLYTVLVDGDDLTEP  321
            +A A REI+L+ GE +VS  Y P+VFS +P+LLER+G ++ GSIT++YTVLV+GDD+ EP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  322  VTDTARGILDGHIVLSRNLANKNQYPAIDVLASVSRVMPDIVDDEHQKIANDIKKTMAIY  381
            ++D  R++LDGHIVLSR LA++ +YPAIDVLA++SRV P +  +EH+++A  +++ +A+Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  REAEDLINVGAYAKGSNEKIDYAIEVIDKIQEFIKQGVHERYSYEETINLMKNVL  436
            +E E LI +G Y +G +   D AI+    I  F++Q+ +E  + E  I+ + ++L
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

172) Clo1313_1752 in NC_017304


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  325 bits (1221),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 198/415 (48%), Positives = 297/415 (72%), Gaps = 7/415 (1%)

Query  23   GKVSKVVGLTIESNGPEVNIGEICKINALRENKVISAEAVGFRDNKVLLMPLGDMNGIGP  82
            G++  V +  +++  P V +GE+C I++   + +  AE VG+ ++K LL P+    G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKP--GEEL--AEVVGINGSKALLSPFTSTAGLHC  78

Query  83   GSKVVATRDYLSVGVGNALIGRVIDGMGRPIDGKG-EIVTETTYPVENKPPHPLKRNRIK  141
            G +V+A R    V VG+AL+GRVIDG GRP+DG+    V    Y  +  PP ++ R+ I 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPIT  136

Query  142  EPLPLGVKTIDGLLTVGKGQRVGIFAGSGVGKSTLIGMIARNTKADVNVIALIGERGREV  201
            +PL  G+++ID++ T G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  202  REFIEKDLKEEGLKRSVVVVATSDQPALIRLKGALMATAIAEYFRDQGKDVLLLMDSLTR  261
            REFI+  L EE  KR V+VVATSD+PAL R+++ ++AT+IAE+FRD+GK V+LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  262  FAMAQREIGLSIGEPPVSRGYTPSVFSIMPKLLERAGNSQSGSITGLYTVLVDGDDLTEP  321
            +A A REI+L+ GE +VS  Y P+VFS +P+LLER+G ++ GSIT++YTVLV+GDD+ EP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  322  VTDTARGILDGHIVLSRNLANKNQYPAIDVLASVSRVMPDIVDDEHQKIANDIKKTMAIY  381
            ++D  R++LDGHIVLSR LA++ +YPAIDVLA++SRV P +  +EH+++A  +++ +A+Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  REAEDLINVGAYAKGSNEKIDYAIEVIDKIQEFIKQGVHERYSYEETINLMKNVL  436
            +E E LI +G Y +G +   D AI+    I  F++Q+ +E  + E  I+ + ++L
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

173) VAPA_2c06320 in NC_022234


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  325 bits (1221),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 209/400 (53%), Positives = 297/400 (75%), Gaps = 6/400 (1%)

Query  28   RGRVSKAVGMLIDASGIQAHVGELCELVTPGEPPLLAEVVGFRDNTAILTPLGPITGISA  87
            +GR+    + L++A      +GELC  + PGE   LAEVVG+ ++ A+L+P+ + +G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCC-IKPGEE--LAEVVGINGSKALLSPFTSTAGLHC  78

Query  88   LTEVLPTGRGHVCPVGAGLLGRVLDALGQPIDERG-PLKTRTQLPVHREPVSPLARRMIE  146
              +V++  R H  PVG +LLGRV+D++G+P+D R  P   + +      P +++ R+ I 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPIT  136

Query  147  APLPTGIRAVDSLLTLGEGQRVGVFAPPGVGKSTLLGMFARGATADVNVIALIGERGREV  206
             PL TGIRA+DS+ T GEGQRVG+F++PGVGKSTLL+M+  ++ AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  207  KEFIEHNLGAEGLAKTVMVVSTSDRPPMERIKSAYVATTIAEHFRDQGKKVLLLVDSLTR  266
            +EFI+  L+ E   + V+VV+TSDRP++ER+++ +VATTIAE FRD+GK+V+LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  267  FARAQREIGLASGEPPTRRSYPPSIFSMLPQLLERAGQGRTGSITAVYSVLTEGDEENDP  326
            +ARA REI+LA+GE +    YPP++FS LP+LLER+G G  GSITA Y+VL EGD+ N+P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  327  IAEEVRSILDGHIVLSRKVAAANRYPAIDVLASISRVMPLVASQDHraaaarfrSLLAKY  386
            +A+EVRS+LDGHIVLSR++A   +YPAIDVLA++SRV P+V+S++HR  AA +R  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  387  QEMELLVQIGEYKAGGDALADEAIRMRPAMLDFLSQPPDA  426
            QE+ELL++IGEY+ G D+ +D AI   P +  FL Q+ D 
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

174) fliI in NC_016012


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  325 bits (1220),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 197/381 (52%), Positives = 279/381 (74%), Gaps = 7/381 (1%)

Query  40   FIGEICYIYNEYGEEIECEVVGINQERSILMPFGDVRGISTGSKVIATKKLLSVKISDEL  99
            F+GE+C I    GEE+  EVVGIN  +++L PF    G+  G +V+A ++   V +++ L
Sbjct  41   FMGELCCIKP--GEELA-EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  100  LGCVLDGLGRVQIGN--PPENYTEFTVDNKPPIAMKRKEITEIMQTGVRVIDGTLTCGVG  157
            LG V+DG+GR   G   P     ++  D  PP AM R+ IT+ + TG+R ID+  TCG G
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  158  QRVGIFAGSGVGKSTLMGMLARNASADVNVIGLIGERGRELKEFIHHDLGEEGLKKSVVV  217
            QRVGIF+++GVGKSTL++ML   + AD NV+ LIGERGRE++EFI+  L+EE  K+ V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  218  CATSDEPALIRFKASLVTTAIAEYFREQGKNVILMMDSVTRFAMAQREVGLAIGEPPATK  277
             ATSD PAL R +A +V+T+IAE+FR++GK V+L+ DS+TR+A A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  278  GYTPSVFALLPKLLERTGPSQNGAITAFYTVLVDGDDMNDPIADTVRGILDGHIVLSRAL  337
             Y P+VF+ LP+LLERTG +++G+ITAFYTVLV+GDDMN+P+AD VR++LDGHIVLSR L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  338  AQKNHYPAIDVLKSVSRLMSKIVSDEHKELAGTVRNLLAVYQDAEDLINIGAYVHGSNPD  397
            A++ HYPAIDVL ++SR+ + + S+EH++LA+ +R  LA+YQ+ E LI IG Y +G + D
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  398  IDKAIQYINQINEYLRQKTME  418
             DKAI+   +I  +LRQ   E
Sbjct  396  TDKAIDTYPDICTFLRQSKDE  416

175) GYMC52_1129 in NC_014915


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  325 bits (1220),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 205/419 (49%), Positives = 291/419 (70%), Gaps = 5/419 (1%)

Query  2    YKRFGKVSRVIGLMMESKGPKSSIGDLCYIHEQSGCRKIPAEVVGFHEQHVLLMPFSATT  61
            Y R G++  V + ++++  P   +G+LC I          AEVVG++    LL PF++T+
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTA  74

Query  62   HIAPGCLVEATGRPLEVHVGDALIGMVLDPLGQPLDGSPLPPGLKPVSVERDPPNPLVRP  121
             +  G  V A  R  +V VG+AL+G V+D +G+PLDG  LP  +     +  PP ++VR 
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPAMVRQ  133

Query  122  PIVEPLEVGIRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARHTSADVNVIALIGERG  181
            PI +PL  GIR IDS+ + G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  182  REVREFLERDLGPDGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDS  241
            REVREF++  L+ +   R V+VVATSD+PAL RV++ + AT+IAE+FRD+G  V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  242  VTRVAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDM  301
            +TR A A REI+LA GE + +  Y P+VF+ LP+LLER+G    G+ITAFYTVLV+GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  302  NEPIADAVRGILDGHFVLERQLANKGHYPAINVLKSVSRVMPHMISAEHREAANRFRRLL  361
            NEP+AD VR++LDGH+VL R+LA++GHYPAI+VL ++SRV P + S EHR+ A  +RR L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  362  STYIDSEDLIQIGAYKRGSSQEIDEAIEFYPQMMAFCRQNIDEKTTRAESIDALLRLLS  420
            + Y + E LI+IG Y+RG   + D AI+ YP++ +F RQ+ DE       I+ L ++L+
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

176) fliI in NC_013411


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  325 bits (1220),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 205/419 (49%), Positives = 291/419 (70%), Gaps = 5/419 (1%)

Query  2    YKRFGKVSRVIGLMMESKGPKSSIGDLCYIHEQSGCRKIPAEVVGFHEQHVLLMPFSATT  61
            Y R G++  V + ++++  P   +G+LC I          AEVVG++    LL PF++T+
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTA  74

Query  62   HIAPGCLVEATGRPLEVHVGDALIGMVLDPLGQPLDGSPLPPGLKPVSVERDPPNPLVRP  121
             +  G  V A  R  +V VG+AL+G V+D +G+PLDG  LP  +     +  PP ++VR 
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPAMVRQ  133

Query  122  PIVEPLEVGIRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARHTSADVNVIALIGERG  181
            PI +PL  GIR IDS+ + G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  182  REVREFLERDLGPDGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDS  241
            REVREF++  L+ +   R V+VVATSD+PAL RV++ + AT+IAE+FRD+G  V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  242  VTRVAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDM  301
            +TR A A REI+LA GE + +  Y P+VF+ LP+LLER+G    G+ITAFYTVLV+GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  302  NEPIADAVRGILDGHFVLERQLANKGHYPAINVLKSVSRVMPHMISAEHREAANRFRRLL  361
            NEP+AD VR++LDGH+VL R+LA++GHYPAI+VL ++SRV P + S EHR+ A  +RR L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  362  STYIDSEDLIQIGAYKRGSSQEIDEAIEFYPQMMAFCRQNIDEKTTRAESIDALLRLLS  420
            + Y + E LI+IG Y+RG   + D AI+ YP++ +F RQ+ DE       I+ L ++L+
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

177) Thethe_01417 in NC_019970


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  325 bits (1220),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 192/417 (47%), Positives = 302/417 (73%), Gaps = 8/417 (1%)

Query  23   YGKVSQVVGLTIESIGPISNVGDVCEIKSINGNTIYAEVMGFKDDKVYLMPLGNMDGIGP  82
             G++ +V +  +++  P   +G++C IK+  G+ + AEV+G+++ K  L P+ +  G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKP--GEEL-AEVVGINGSKALLSPFTSTAGLHC  78

Query  83   GNSVISTGQKLKIGVGEELLGRVIDALGNPIDGKG--PIKFKKLISTNNVPPNPLERKRI  140
            G+ V++  ++ ++ VGE LLGRVID++G P+DG+    +  K     + +PP ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY---DAMPPPAMVRQPI  135

Query  141  REVMPLGIKAIDGLLTCGKGQRVGIFAGSGVGKSTLLGMIARNAKSDINVIALIGERGRE  200
             + +  GI+AID++ TCG GQRVGIF+++GVGKSTLL+M+   + +D NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VNEFIEKDLGEDGLKRSILVISTSDTPALMRVKGAMTATSIAEYFRDQGLDVLFMMDSVT  260
            V EFI+  L+E+  KR ++V++TSD PAL RV++   AT+IAE+FRD+G  V+++ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RFAMAQREIGLSIGEAPVSRGYTPSVFSILPKLLERAGSSKNGSITALYTVLVDGDDLNE  320
            R+A A REI+L+ GE++VS  Y P+VFS LP+LLER+G + +GSITA+YTVLV+GDD+NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  321  PITDAVRGILDGHIVLSRKLANKGQYPAIDILASISRVMNDIVSDEHKDLSSKFKSILSV  380
            P++D VR++LDGHIVLSR+LA++G+YPAID+LA++SRV   + S+EH++L++ ++  L++
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  381  YEESEDLINIGAYARGSNPKIDEAISLHDDMINYIKQTTDENYNFEDELNMLKNILN  437
            Y+E E LI IG Y RG +   D AI    D+  +++Q+ DE    E  ++ L +IL 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

178) fliI in NC_007503


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  325 bits (1218),  Expect = 4e-90, Method: Compositional matrix adjust.
 Identities = 204/399 (52%), Positives = 296/399 (75%), Gaps = 8/399 (2%)

Query  22   WGVVRQVIGLTVEAHGLKVSVGETVEILAGNARVLAEVVGFKEENAILMPLGEINGISLG  81
            WG +++V +  ++A    V +GE   I +G+   LAEVVG++  +A+L P+    G+  G
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   SLVRPLRRQLQITVGKSLLGKVLDGLGRPLNA---DKIYGRHFSLDRKPPKPLHRRRIKK  138
              V +LRR+ Q+ VG +LLG+V+DG+GRPL++     +  +++  D  PP ++ R+ I +
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQ  137

Query  139  PFATGIKAIDGPLTCGEGQRLGIFAGSGVGKSTLLGMIARYAEADVNVIALIGERGREVL  198
            P+ TGI+AID+  TCGEGQR+GIF+++GVGKSTLL+M+   ++AD NV+ LIGERGREV 
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  199  DFIENDLGEGIKK-SVLVVATSEQPALFRVKGAFVATAIAEYFREQGKKVLLMMDSLTRF  257
            +FI+  L+E  +K  V+VVATS++PAL RV++ FVAT+IAE+FR++GK+V+L+ DSLTR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  258  AMAQREIGLAAGEPPSSRGYTPSVFALLPKLVERAGNDDKGSITAFYTVLVEGDDFNEPI  317
            A A REI+LAAGE + S  Y P+VF+ LP+L+ER+G ++KGSITAFYTVLVEGDD NEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  318  ADAVRGLLDGHIVLSRQLAGKGHYPAIDLLASNSRLMPELVDEQHLALTLKMREILDIYR  377
            AD VR+LLDGHIVLSR+LA +GHYPAID+LA+ SR+ P +  ++H  L+  +R  L +Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  QNEDLILIGAYKPGTNPLLDRAIQLVPKINQFLQQKQNE  416
            + E LI IG Y+ G +   D+AI+  P I  FL+Q ++E
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

179) fliI in NC_021362


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  325 bits (1219),  Expect = 4e-90, Method: Compositional matrix adjust.
 Identities = 192/407 (48%), Positives = 288/407 (71%), Gaps = 6/407 (1%)

Query  11   TADSYKRYGKVKQAVGLMIESKGPECSIGDVCKIYTKGDGPKAIKAEVVGFKDQNILLMP  70
             +D+Y R G++++  + ++++  P   +G++C I      P    AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI-----KPGEELAEVVGINGSKALLSP  69

Query  71   YLEAANIAPGSIVEATGESLRVKVGSGLIGQVVDAFGNPLDGSALPKGLAQVSTEQAPPN  130
            +  +A +  G  V A     +V VG +L+G+V+D+FG PLDG  LP  +     +  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  131  PMKRPPIREKMAVGVRSIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARETAADLNVIAL  190
            +M R PI + +  G+R+IDS+ T G GQRVGIF+++GVGKSTL++M+     AD NV+ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  191  VGERGREVREFIEKDLGEEGLKRTIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVM  250
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  251  FMMDSVTRVAMAQREIGLATGEPPTTKGYTPSVFAILPKLLERTGTTENGSITAFYTVLV  310
            ++ DS+TR A A REI+LA+GE + +  Y P+VF+ LP+LLERTG  E+GSITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  311  DGDDMNEPIADTVRGILDGHIVLDRSLANKGQFPAVNILKSISRVMSNIAGKDHIRAANR  370
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + +++ +H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  371  FREMLSTYQNSEDLINIGAYKKGSSREIDEAIQFHPKLISFLKQEVD  417
            +R  L+ YQ+ E LI IG Y++G   + D AI+  P + +FL+Q  D
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD  415

180) sctN in NC_005861


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  325 bits (1218),  Expect = 5e-90, Method: Compositional matrix adjust.
 Identities = 207/402 (52%), Positives = 292/402 (73%), Gaps = 5/402 (1%)

Query  40   GRITEIVGMLIKAVVPQVKIGEVCLIKRAGDPLRAEVVGFTKDEVLLSPLGEMTGIGPSS  99
            GRI ++ + L++A +P V +GE+C IK +G+ L AEVVG+     LLSP+   +G+  + 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL-AEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  100  EVIPTHLPLHIKVGPQLLGRILNGLGEPLDEETKGPLILEETYPVIQAPPDPVKRMPIHN  159
            +V++ +   ++ VG  LLGR+++G+G PLD      +   + Y  +  PP ++ R PI +
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD-YDAM--PPPAMVRQPITQ  137

Query  160  PISVGIRAIDGVLTTGLGQRVGIFAAAGGGKSTLLGMIARNAVADVNVISLIGERGRELR  219
            P+  GIRAID+V T G GQRVGIF+A+G GKSTLL+M+   + AD NV+ LIGERGRE+R
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  220  EFIEKDLGPEGLKRSVLVVSTSDQASQLRLNAAYVGTAIAEYFRDQGKSVILMMDSVTRF  279
            EFI+  L+ E  KR V+VV+TSD+++  R+ A +V+T+IAE+FRD+GK V+L+ DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  280  ARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGNSDKGSITAFYTILVAGDDMNEPV  339
            ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KGSITAFYT+LV GDDMNEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  340  ADEVRSILDGHIILSSELARQYHYPAIDVLSSASRVMNAIVPKEHLQLVGKLKEVLANYK  399
            ADEVRS+LDGHI+LS  LA + HYPAIDVL++ SRV   + + EH QL + L+  LA Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  400  KNELLIKIGEYKRGADKAGDFAIDYIEKVLKFLKQGVDEKCS  441
              ELLI+IGEY+RG D   D AID    +  FL+Q+ DE C+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

181) Bcenmc03_5939 in NC_010515


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  324 bits (1214),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 211/430 (50%), Positives = 300/430 (70%), Gaps = 7/430 (1%)

Query  17   LTDTLEQEFDRAAHLSTRGKVMDALGTLIRVSGIDVRYGELCELRTGQGELMQCAEVVGF  76
            L + L   +  +     +G++ D  +TL+     +V  GELC ++ G+ EL   AEVVG+
Sbjct  5    LMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE-EL---AEVVGI  60

Query  77   SRDTALLSPFGRLDGLSRDTQVVALRRPLAIPVGSALFGRVVDSMGRPIDGRGPIDTTET  136
            +   ALLSPF    GL  + QV+ALRR   +PVG AL+GRV+D+ GRP+DGR   +    
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  137  AALYAA-PPDAMSRPLLERSLDTGVRVVDGLMTLGEGQRVGIFAPAGVGKSTLMGMFARG  195
               Y A PP AM R  + ++L TG+R +D++ T GEGQRVGIF+++GVGKSTL++M+  +
Sbjct  121  D--YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNA  178

Query  196  TRCDLNVIALIGERGREVREFIEQILGPEGIARSIVVCATSDRSSIERVKAAYSATAIAE  255
               D NV+ LIGERGREVREFI+  L+ E   R ++V ATSDR+++ERV+A + AT+IAE
Sbjct  179  PDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE  238

Query  256  YFRDRGKRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSIFAELPRLLERAGLSEHG  315
            +FRD GKRV+L+ DSLTR+ARA REI+LAAGE +    +PP++F+ LPRLLER+G++E G
Sbjct  239  FFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKG  298

Query  316  SITALYTVLAEDESGSDPVAEEVRGILDGHMILSREIAARNQYPAIDVLASLSRVMPQVT  375
            SITA+YTVL E++  ++P+A+EVR++LDGH++LSR +A R +YPAIDVLA+LSRV P VT
Sbjct  299  SITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVT  358

Query  376  DDAHREAAGHVRRLLAKHRDIETLLQLGEYRAGGDPVADEAVRKIEAIRQFLCQRTDEFS  435
             + HR+ A+ +RR LA  +++E L+++GEY+ G D  +D A+     I  FL Q  DE  
Sbjct  359  SHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

Query  436  TREATRDALR  445
              E   + L+
Sbjct  419  GPELLIEKLH  428

182) fliI in NC_017061


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  324 bits (1214),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 194/408 (48%), Positives = 293/408 (72%), Gaps = 6/408 (1%)

Query  12   TADPYKRYGKVKRVIGLMIESKGPESSIGDVCLIYPKGHAKKAIKAEVVGFQDENILLMP  71
             +D Y R G+++ V + ++++  P   +G++C I P  +      AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSP  69

Query  72   YLEAASIAPGSIVEATGESLRIKVGAGLIGQVVDAFGEPLDGRALPKGLSPVSTEQpppn  131
            +  +A++  G  V A     ++ VG +L+G+V+D+FG PLDGR LP  +     +  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  132  pmkrppIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNIIAL  191
            +M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD N++ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  VGERGREVREFIEKDLGEEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGRNVM  251
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  FMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEQGTITAFYTVLV  311
            ++ DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E+G+ITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISDTSHIEAANK  371
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++   H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  FRDLLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTEE  419
            +R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ +E
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

183) fliI in NC_017912


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  324 bits (1214),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 194/408 (48%), Positives = 293/408 (72%), Gaps = 6/408 (1%)

Query  12   TADPYKRYGKVKRVIGLMIESKGPESSIGDVCLIYPKGHAKKAIKAEVVGFQDENILLMP  71
             +D Y R G+++ V + ++++  P   +G++C I P  +      AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSP  69

Query  72   YLEAASIAPGSIVEATGESLRIKVGAGLIGQVVDAFGEPLDGRALPKGLSPVSTEQpppn  131
            +  +A++  G  V A     ++ VG +L+G+V+D+FG PLDGR LP  +     +  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  132  pmkrppIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNIIAL  191
            +M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD N++ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  VGERGREVREFIEKDLGEEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGRNVM  251
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  FMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEQGTITAFYTVLV  311
            ++ DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E+G+ITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISDTSHIEAANK  371
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++   H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  FRDLLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTEE  419
            +R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ +E
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

184) DvMF_2435 in NC_011769


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  324 bits (1216),  Expect = 6e-90, Method: Compositional matrix adjust.
 Identities = 208/401 (52%), Positives = 294/401 (74%), Gaps = 7/401 (1%)

Query  38   VPGVKVGELCILRNPWENWTLRAEVVGFVKQVALLTPLGDLQGVSPATEVIPTGEILSIP  97
            +PGV +GELC ++   E+    AEVVG+    ALL+P+    G+  + +V++      +P
Sbjct  37   LPGVFMGELCCIKPG-EE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVP  92

Query  98   VGEDLLGRVLDGLGEPMDG-GPPLKPRTRYPVYAQPPNPMQRRIIDRPISLGLRVLDGVL  156
            VGE LLGRV+DG+G P+DG   P   +  Y   A PP +M R+ I +P+  G+R +D+V 
Sbjct  93   VGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPITQPLMTGIRAIDSVA  150

Query  157  TCGEGQRMGIFAAAGGGKSTLLSSIIKGCSADVCVLALIGERGREVREFIEHDLGPEGRK  216
            TCGEGQR+GIF+A+G GKSTLL+ + ++  AD  VL LIGERGREVREFI+  L+ E RK
Sbjct  151  TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK  210

Query  217  KAVLVVSTSDRSSMERLKAAYTATAIAEYFRDQRRSVLLMMDSVTRFGRAQREIGLAAGE  276
            + V+VV+TSDR+++ER++A + AT+IAE+FRD+ + V+L+ DS+TR++RA REI+LAAGE
Sbjct  211  RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE  270

Query  277  PPTRRGFPPSVFSTLPRLMERAGNSDKGSITALYTVLVEGDDMTEPIADETRSILDGHIV  336
             +    +PP+VFS+LPRL+ER+G ++KGSITA+YTVLVEGDDM EP+ADE RS+LDGHIV
Sbjct  271  TAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  337  LSRKLAAANHYPAIDVQASVSRVMNAIVDKEHKAAAQKLRKVLAKYAEVELLVQIGEYKR  396
            LSR+LA   HYPAIDV A++SRV   +   EH+  A  LR+ LA Y EVELL++IGEY+R
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  397  GSDKEADEALDRVAAVNAFLRQGLDERSGFDDTLAALRKVV  437
            G D ++D A+D  + + +FLRQ+ DE  G +  +  L++++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

185) C770_GR4pC1267 in NC_019848


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  324 bits (1216),  Expect = 6e-90, Method: Compositional matrix adjust.
 Identities = 216/437 (50%), Positives = 312/437 (72%), Gaps = 9/437 (2%)

Query  10   GELIRRLRRRALTSDTRPVHGRVRRITGIIVHATAPMVRIGELCYLRDPVSGTTVPAEVV  69
             EL++RLR +   +D     GR++ +++ +++A  P V +GELC ++   +G  + AEVV
Sbjct  3    NELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIK---PGEEL-AEVV  58

Query  70   GFEDEEAVLTPIGDLEGMSTRAEVIATGKTLQIPVGEGLLGRVLNPLGEVLDLAEDRTVP  129
            G+++  A+L+P+    G+    +V+A  +  Q+PVGE+LLGRV++ +G  LD   +R +P
Sbjct  59   GINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD---GRELP  115

Query  130  LVTGTYYPTHRPPPNALQRDLITHPLQLGIRAIDGLLTVARGQRVGIFGEPGVGKSSLLS  189
             V    Y +   PP A+ R+ IT+PL  GIRAID++ T + GQRVGIF+ PGVGKS+LL+
Sbjct  116  EVCWKDYDAM--PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  190  AIVRGTKADVVVIGLVGERGREVREFIERQLGEEGRKRSVVVVATSDRPAIERVKAAYCA  249
             +  +  AD  V+ L+GERGREVREFI+  L+EE RKR V+VVATSDRPA+ERV+A + A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  250  TAIAEYFRDQGQDVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSLFAALPRLLERAG  309
            T+IAE+FRD+G+ V+LL DS+TR+ARA REI+LAAGE +    YPP++F+ALPRLLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  310  PGRGGTITALYTVLTEGDGTLDPVAEETKAILDGHIMLSSSLAERNFFPAIDVLKSRSRL  369
             G  G+ITA+YTVL EGD+  +P+A+E +++LDGHI+LS  LAER  +PAIDVL + SR+
Sbjct  294  MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRV  353

Query  370  MESVAGKAHREHAAHIRALLARYEEIELLLRVGEYERGVDALSDEAIVKREAIEAFLRQD  429
               V++  HR+ AA +R  LA Y+E+ELL+R+GEY+RGVD+ +D AI     I +FLRQ 
Sbjct  354  FPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

Query  430  DNEFSSLDTTEELLKRI  446
             +E  + +   E L +I
Sbjct  414  KDEVCGPELLIEKLHQI  430

186) Tsac_1784 in NC_017992


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  324 bits (1216),  Expect = 6e-90, Method: Compositional matrix adjust.
 Identities = 193/416 (47%), Positives = 299/416 (72%), Gaps = 6/416 (1%)

Query  23   YGKVSQVVGLTIESVGPISNIGDVCEIRSINGTTVYAEVMGFKDDKVYLMPLGDMDGIGP  82
             G++ +V +  +++  P   +G++C    I+     AEV+G+++ K  L P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELC---CIKPGEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  83   GNSVVSTGQKLKIGVGEELLGRVIDALGNPIDGKG-AIKCKKLVSTNNTPPNPIERKRIS  141
            G+ V++  ++ ++ VGE LLGRVID++G P+DG+  +  C K    +  PP ++ R+ I+
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK--DYDAMPPPAMVRQPIT  136

Query  142  EVMTLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARNAKSDINVIALIGERGREV  201
            + +  GI+AID++ TCG GQR+GIF+++GVGKSTLL+M+   + +D NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  202  NEFIENDLGEDGLKRSILVVSTSDTPALMRVKGAMVATSIAEYFRDQGLDVLLMMDSVTR  261
             EFI+  L+E+  KR ++VV+TSD PAL RV++  VAT+IAE+FRD+G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  262  FAMAQREIGLSIGEAPVSRGYTPSVFSVLPKLLERAGSSKYGSITALYTVLVDGDDLNEP  321
            +A A REI+L+ GE++VS  Y P+VFS LP+LLER+G +  GSITA+YTVLV+GDD+NEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  322  ITDAVRGILDGHIVLSRKLANKGQYPAIDVLSSISRVMNDIVTDEHKNLSLRFKNILSVY  381
            ++D VR++LDGHIVLSR+LA++G+YPAIDVL+++SRV   + ++EH++L+  ++  L++Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  EESEDLINIGAYARGSNSKIDEAILLHDDMINYIKQSTDEKYDFDDEINMLKNILN  437
            +E E LI IG Y RG ++  D AI    D+  +++QS DE  + +  I+ L +IL 
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

187) Sgly_0598 in NC_015172


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  324 bits (1216),  Expect = 7e-90, Method: Compositional matrix adjust.
 Identities = 203/415 (49%), Positives = 292/415 (71%), Gaps = 6/415 (1%)

Query  21   GLVSKVTGLLIEANGPKVSVGRYCCIVSSKSEIPAEVVGFKDNKTLLMPLGELEGVSPGD  80
            G +  V++ L++A  P V +G  CCI    +E  AEVVG++++K+LL P+    G+  G+
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  81   KVIPQKEKLAVKVGSELLGRVLDGLGNPLEGRPLK--SNIDYPLQNAPPHALLRPRVSEP  138
            +V++ + +  V VG  LLGRV+DG+G PL+GR L      DY  +  PP A++R  +++P
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQP  138

Query  139  LSVGVRSVDGLLTIGRGQRMGIFAGSGVGKSTLLGMMARNTQADINVIALVGERGRELRE  198
            L  G+R++D++ T G GQR+GIF+++GVGKSTLL+M+    +AD NV+ L+GERGRE+RE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  199  FIEKDLGPEGISRSVIVVATSDQPALVRIKAAFTATAIAEYFRDTGKNVLLMMDSVTRFA  258
            FI+  L+ E   R VIVVATSD+PAL R++A F AT+IAE+FRD GK V+L+ DS+TR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  259  MAQREVGLTIGEPPATRGYPPSVFAMLPKLLERAGMAEKGSITGLYTVLVDGDDHNEPIA  318
             A RE++L+ GE + +  YPP+VF+ LP+LLER+GM+EKGSIT++YTVLV+GDD NEP+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  319  DAVRGILDGHIVLSRDLAARNHFPSIDILQSVSRCMSDVAEPEMIGLAGKVRELLAVYQG  378
            D VR++LDGHIVLSR LA R H+P+ID+L ++SR  + V+  E   LA+ +R  LA+YQ 
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  379  AKDLIDIGAYVRGSNAKIDTALKYMEKITLFLCQSTDEKFNGIDMVAEIKKIFTE  433
               LI IG Y RG ++  D A+     I  FL QS DE      ++  + +I+TE
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

188) fliI in NC_006510


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  324 bits (1215),  Expect = 8e-90, Method: Compositional matrix adjust.
 Identities = 204/419 (49%), Positives = 290/419 (70%), Gaps = 5/419 (1%)

Query  2    YKRFGKVSRVIGLMMESKGPKSSIGDLCYIHEQSGCRKIPAEVVGFHEQHVLLMPFSAMS  61
            Y R G++  V + ++++  P   +G+LC I          AEVVG++    LL PF++ +
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTA  74

Query  62   HIAPGCLVEATGRPLEVHVGDALIGMVLDPLGQPLDGSPLPPGLKPVSVERDPPNPLVRP  121
             +  G  V A  R  +V VG+AL+G V+D +G+PLDG  LP  +     +  PP ++VR 
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPAMVRQ  133

Query  122  PIVEPLEVGIRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARHTSADVNVIALIGERG  181
            PI +PL  GIR IDS+ + G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  182  REVREFLERDLGPDGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDS  241
            REVREF++  L+ +   R V+VVATSD+PAL RV++ + AT+IAE+FRD+G  V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  242  VTRVAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDM  301
            +TR A A REI+LA GE + +  Y P+VF+ LP+LLER+G    G+ITAFYTVLV+GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  302  NEPIADAVRGILDGHFVLERQLANKGHYPAINVLKSVSRVMPHMISAEHREAANRFRRLL  361
            NEP+AD VR++LDGH+VL R+LA++GHYPAI+VL ++SRV P + S EHR+ A  +RR L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  362  STYIDSEDLIQIGAYKRGSSQEIDEAIEFYPQMMAFCRQNIDEKTTRAESIDALLRLLS  420
            + Y + E LI+IG Y+RG   + D AI+ YP++ +F RQ+ DE       I+ L ++L+
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

189) fliI in NC_009725


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  324 bits (1214),  Expect = 9e-90, Method: Compositional matrix adjust.
 Identities = 194/408 (48%), Positives = 293/408 (72%), Gaps = 6/408 (1%)

Query  12   TADPYKRYGKVKRVIGLMIESKGPESSIGDVCLIYPKGHAKKAIKAEVVGFQDENILLMP  71
             +D Y R G+++ V + ++++  P   +G++C I P  +      AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSP  69

Query  72   YLEAASIAPGSIVEATGESLRIKVGAGLIGQVVDAFGEPLDGRALPKGLSPVSTEQpppn  131
            +  +A++  G  V A     ++ VG +L+G+V+D+FG PLDGR LP  +     +  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  132  pmkrppIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNIIAL  191
            +M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD N++ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  VGERGREVREFIEKDLGEEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGRNVM  251
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  FMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEQGTITAFYTVLV  311
            ++ DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E+G+ITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISDTSHIEAANK  371
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++   H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  FRDLLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTEE  419
            +R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ +E
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

190) fliI in NC_022081


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  324 bits (1214),  Expect = 9e-90, Method: Compositional matrix adjust.
 Identities = 194/408 (48%), Positives = 293/408 (72%), Gaps = 6/408 (1%)

Query  12   TADPYKRYGKVKRVIGLMIESKGPESSIGDVCLIYPKGHAKKAIKAEVVGFQDENILLMP  71
             +D Y R G+++ V + ++++  P   +G++C I P  +      AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSP  69

Query  72   YLEAASIAPGSIVEATGESLRIKVGAGLIGQVVDAFGEPLDGRALPKGLSPVSTEQpppn  131
            +  +A++  G  V A     ++ VG +L+G+V+D+FG PLDGR LP  +     +  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  132  pmkrppIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNIIAL  191
            +M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD N++ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  VGERGREVREFIEKDLGEEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGRNVM  251
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  FMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEQGTITAFYTVLV  311
            ++ DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E+G+ITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISDTSHIEAANK  371
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++   H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  FRDLLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTEE  419
            +R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ +E
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

191) sctN, cdsN in NC_015702


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1213),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 204/402 (51%), Positives = 289/402 (72%), Gaps = 5/402 (1%)

Query  24   GRITETVGMLIKAIVPQVKIGEVCLVKREGEPLLTEVVGFTREEVFLSPLGEMTGIGPSS  83
            GRI +  + L++A +P V +GE+C +K   E  L+EVVG+     +LSP+   +G+  + 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE--LAEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  84   EVIPTRLPLHIKVGPQLLGRVLNGLGEPLDVATKGPLELNEVYPVIQAPPDPLKRKRIVE  143
            +V++ R   ++ VG  LLGRV++G+G PLD      +  ++ Y  +  PP ++ R+ I +
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD-YDAM--PPPAMVRQPITQ  137

Query  144  PISVGIRAIDGVLTTGLGQRVGIFAAAGGGKSTTLGMIARNAMADVNVISLIGERGRELR  203
            P+  GIRAID+V T G GQRVGIF+A+G GKST L+M+   + AD NV+ LIGERGRE+R
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  204  DFIEKDLGPEGLKRSVLVVSTSDQASQLRLNAAYVGTAIAEYFRDQGKSVILMMDSVTRF  263
            +FI+  L+ E  KR V+VV+TSD+++  R+ A +V+T+IAE+FRD+GK V+L+ DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  264  ARALREVGLAAGEPPARAGYTPSVFSTLPKLLERTGNSDVGSITAFYTILVAGDDMNEPV  323
            ARA RE++LAAGE +  + Y P+VFS+LP+LLERTG ++ GSITAFYT+LV GDDMNEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  324  ADEVRSILDGHIILSSELARQYHYPAIDVLSSASRVMPSIVPKEHLQLVGKLKEVLANYK  383
            ADEVRS+LDGHI+LS  LA + HYPAIDVL++ SRV P + + EH QL + L+  LA Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  384  KNELLIKIGEYKRGADKAGDFAIDHIDKVNKFLKQGVDEKCS  425
              ELLI+IGEY+RG D   D AID    +  FL+Q+ DE C+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

192) GC56T3_2331 in NC_014206


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1213),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 206/419 (50%), Positives = 291/419 (70%), Gaps = 5/419 (1%)

Query  2    YKRFGKVSRVIGLMMESKGPKSSIGDLCYIHEQSGCRKIPAEVVGFHEQHVLLMPFSATT  61
            Y R G++  V + ++++  P   +G+LC I          AEVVG++    LL PF++T+
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTA  74

Query  62   HIAPGCFVEATGRPLEVHVGDALIGMVLDPLGQPLDGSLLPPGLKPVSVERDPPNPLVRP  121
             +  G  V A  R  +V VG+AL+G V+D +G+PLDG  LP  +     +  PP ++VR 
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPAMVRQ  133

Query  122  PIVEPLEVGIRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARHTSADVNVIALIGERG  181
            PI +PL  GIR IDS+ + G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  182  REVREFLERDLGPDGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDS  241
            REVREF++  L+ +   R V+VVATSD+PAL RV++ + AT+IAE+FRD+G  V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  242  VTRVAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDM  301
            +TR A A REI+LA GE + +  Y P+VF+ LP+LLER+G    G+ITAFYTVLV+GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  302  NEPIADAVRGILDGHFVLERQLANKGHYPAINVLKSVSRVMPHVISAEHREAANRFRRLL  361
            NEP+AD VR++LDGH+VL R+LA++GHYPAI+VL ++SRV P V S EHR+ A  +RR L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  362  STYIDSEDLIQIGAYKRGSSQEIDEAIEFYPQMMAFCRQNIDEKTTRAESIDALLRLLS  420
            + Y + E LI+IG Y+RG   + D AI+ YP++ +F RQ+ DE       I+ L ++L+
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

193) fliI in NC_002967


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1213),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 206/415 (50%), Positives = 292/415 (71%), Gaps = 12/415 (2%)

Query  22   GRVVRVHDKLIESEGPVASVGELCQIITDDNPDGLKAEVVGLNGTIVQLMSYTDVQGVKI  81
            GR+  V   L+++  P   +GELC I  +++     AEVVG+NG+   L ++T   G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLHC  78

Query  82   GDLVIASGEILSVPVGNILLGRVVDALCKSADGK--PEPYSAKRYPVVASPPDAMTRKPI  139
            G+ V+A      VPVG+ LLGRV+D++ ++ DG+  PE    K Y  +  PP AM R+PI
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCW-KDYDAM--PPPAMVRQPI  135

Query  140  RQRIVTGIRAIDSLLAVGRGQRLGIFAGTGIGKSTLLGMIARNTNADVNVIALIGERGRE  199
             Q ++TGIRAIDS+ + G GQR+GIF++ G+GKSTLL+M+    +AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  200  VLDFIEHDLGPEGLKHSVIVSATSDQSALARIRGAYTATAIAEYFRDQGKDVMLLFDSVT  259
            V +FI+  L+ E  K+ VIV ATSD++AL R+R+ + AT+IAE+FRD+GK V+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  260  RFAMAQREIGLAIGEPPATRGYTPSVFSSLPKLLERSGTSEKGSITGFYTVLVEGDDMNE  319
            R+A A REI+LA GE + +  Y P+VFS+LP+LLER+G +EKGSIT+FYTVLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  320  PISDAVRGILDGHIVLDRNLAERGQYPAVNVLKSISRLSNRVSGPNTKDASKRMRTLLKD  379
            P++D VR++LDGHIVL R LAERG+YPA++VL ++SR+   V++ + ++ +  +R  L  
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YTESEDMINLGAYQKGSSAAIDDAIDHYPRIYDFLTQ---EVDDPAKLKDTLQKL  431
            Y E E +I +G YQ+G  +  D AID YP I  FL Q   EV +P  L + L+++
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

194) CTN_0467 in NC_011978


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1211),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 203/418 (49%), Positives = 297/418 (72%), Gaps = 4/418 (0%)

Query  8    EDFNRFNGRVTRVVGLTVESHGPDAFLGEMCKISLQNGKNALAEVVGFKEGNVVLMPYED  67
            +++ R  GR+  V +  +++  P+ F+GE+C I   +  + LAEVVG++ ++ +L P+  
Sbjct  17   DGYCRW-GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTS  72

Query  68   VSGLKMGCEVIRTNRVLEIGVGRNMIGRIFDGLGRPLDGRSFVPEARYPLTNSPPHPLKR  127
             +GL  G +V+   R  ++ VG  ++GR++DG+GRPLDGR +    +      PP ++ R
Sbjct  73   TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVR  132

Query  128  KRIKDPLSVGVRAIDGFITIGKGQRIGIFAGSGVGKSTLLGMIARNTTADVCVLALIGER  187
            + I +PL  G+RAID+  T G GQR+GIF+++GVGKSTLL+M+     AD  VL LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  188  GREVREFIERDLGEEGLKRSILVVSTSDQPALARVKSLLTATSIAEYYRDLGYDVLLMVD  247
            GREVREFI+  L+EE  KR ++VV+TSD+PAL RV++L+ AT+IAE++RD G  V+L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  248  SLTRWAMAQREVGLAIGEPPTTRGYPPSVFAGLPKILERAGNSDRGSITAVYTVLVEADD  307
            SLTR A A RE++LA GE + +  YPP+VF++LP++LER+G +++GSITA YTVLVE+DD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  308  FNEPISDTVRSIVDGHIVLSRRLAESNHYPAIDVLASVSRLMNDVVSEEHKEAANRLRSL  367
             NEP++D VRS++DGHIVLSRRLAE  HYPAIDVLA++SR+   V S+EH++ A  LR  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  368  LASYESAKDLIEIGAYKKGTNPLVDKAIEMQEDINAFLRQGIFEKSSFEETVQRLFEL  425
            LA Y+    LI IG Y++G +   DKAI+   DI +FLRQ+  E  + E  +++L ++
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

195) fliI in NC_014551


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1212),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 194/408 (48%), Positives = 293/408 (72%), Gaps = 6/408 (1%)

Query  12   TADPYKRYGKVKRVIGLMIESKGPESSIGDVCLIYPKGHAKKAIKAEVVGFQDENILLMP  71
             +D Y R G+++ V + ++++  P   +G++C I P  +      AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSP  69

Query  72   YLEAASIAPGSIVEATGESLRIKVGAGLIGQVVDAFGEPLDGRALPKGLSPVSTEQpppn  131
            +  +A++  G  V A     ++ VG +L+G+V+D+FG PLDGR LP  +     +  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  132  pmkrppIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNIIAL  191
            +M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD N++ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  VGERGREVREFIEKDLGEEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGRNVM  251
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  FMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEQGTITAFYTVLV  311
            ++ DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E+G+ITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISDPAHIKAANK  371
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++   H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  FRDLLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTEE  419
            +R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ +E
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

196) fliI in NC_020272


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1213),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 194/408 (48%), Positives = 293/408 (72%), Gaps = 6/408 (1%)

Query  12   TADPYKRYGKVKRVIGLMIESKGPESSIGDVCLIYPKGHAKKAIKAEVVGFQDENILLMP  71
             +D Y R G+++ V + ++++  P   +G++C I P  +      AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSP  69

Query  72   YLEAASIAPGSIVEATGESLRIKVGAGLIGQVVDAFGEPLDGRALPKGLSPVSTEQpppn  131
            +  +A++  G  V A     ++ VG +L+G+V+D+FG PLDGR LP  +     +  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  132  pmkrppIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNIIAL  191
            +M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD N++ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  VGERGREVREFIEKDLGEEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGRNVM  251
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  FMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEQGTITAFYTVLV  311
            ++ DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E+G+ITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISDTAHIEAANK  371
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++   H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  FRDLLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTEE  419
            +R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ +E
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

197) fliI in NC_017190


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1212),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 194/408 (48%), Positives = 293/408 (72%), Gaps = 6/408 (1%)

Query  12   TADPYKRYGKVKRVIGLMIESKGPESSIGDVCLIYPKGHAKKAIKAEVVGFQDENILLMP  71
             +D Y R G+++ V + ++++  P   +G++C I P  +      AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSP  69

Query  72   YLEAASIAPGSIVEATGESLRIKVGAGLIGQVVDAFGEPLDGRALPKGLSPVSTEQpppn  131
            +  +A++  G  V A     ++ VG +L+G+V+D+FG PLDGR LP  +     +  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  132  pmkrppIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNIIAL  191
            +M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD N++ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  VGERGREVREFIEKDLGEEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGRNVM  251
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  FMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEQGTITAFYTVLV  311
            ++ DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E+G+ITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISDPAHIKAANK  371
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++   H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  FRDLLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTEE  419
            +R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ +E
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

198) fliI in NC_019842


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1212),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 194/408 (48%), Positives = 293/408 (72%), Gaps = 6/408 (1%)

Query  12   TADPYKRYGKVKRVIGLMIESKGPESSIGDVCLIYPKGHARKAIKAEVVGFQDENILLMP  71
             +D Y R G+++ V + ++++  P   +G++C I P  +      AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSP  69

Query  72   YLEAASIAPGSIVEATGESLRIKVGAGLIGQVVDAFGEPLDGRALPKGLSPVSTEQpppn  131
            +  +A++  G  V A     ++ VG +L+G+V+D+FG PLDGR LP  +     +  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  132  pmkrppIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNIIAL  191
            +M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD N++ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  VGERGREVREFIEKDLGEEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGRNVM  251
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  FMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEQGTITAFYTVLV  311
            ++ DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E+G+ITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISDTSHIEAANK  371
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++   H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  FRDLLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTEE  419
            +R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ +E
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

199) fliI in NC_016784


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1213),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 194/408 (48%), Positives = 293/408 (72%), Gaps = 6/408 (1%)

Query  12   TADPYKRYGKVKRVIGLMIESKGPESSIGDVCLIYPKGHAKKAIKAEVVGFQDENILLMP  71
             +D Y R G+++ V + ++++  P   +G++C I P  +      AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSP  69

Query  72   YLEAASIAPGSIVEATGESLRIKVGAGLIGQVVDAFGEPLDGRALPKGLSPVSTEQpppn  131
            +  +A++  G  V A     ++ VG +L+G+V+D+FG PLDGR LP  +     +  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  132  pmkrppIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNIIAL  191
            +M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD N++ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  VGERGREVREFIEKDLGEEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGRNVM  251
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  FMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEQGTITAFYTVLV  311
            ++ DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E+G+ITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISDTAHIEAANK  371
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++   H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  FRDLLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTEE  419
            +R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ +E
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

200) fliI in NC_022075


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1213),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 194/408 (48%), Positives = 293/408 (72%), Gaps = 6/408 (1%)

Query  12   TADPYKRYGKVKRVIGLMIESKGPESSIGDVCLIYPKGHAKKAIKAEVVGFQDENILLMP  71
             +D Y R G+++ V + ++++  P   +G++C I P  +      AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSP  69

Query  72   YLEAASIAPGSIVEATGESLRIKVGAGLIGQVVDAFGEPLDGRALPKGLSPVSTEQpppn  131
            +  +A++  G  V A     ++ VG +L+G+V+D+FG PLDGR LP  +     +  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  132  pmkrppIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNIIAL  191
            +M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD N++ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  VGERGREVREFIEKDLGEEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGRNVM  251
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  FMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEQGTITAFYTVLV  311
            ++ DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E+G+ITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISDTAHIEAANK  371
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++   H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  FRDLLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTEE  419
            +R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ +E
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

201) fliI in NC_017188


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1212),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 194/408 (48%), Positives = 293/408 (72%), Gaps = 6/408 (1%)

Query  12   TADPYKRYGKVKRVIGLMIESKGPESSIGDVCLIYPKGHAKKAIKAEVVGFQDENILLMP  71
             +D Y R G+++ V + ++++  P   +G++C I P  +      AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSP  69

Query  72   YLEAASIAPGSIVEATGESLRIKVGAGLIGQVVDAFGEPLDGRALPKGLSPVSTEQpppn  131
            +  +A++  G  V A     ++ VG +L+G+V+D+FG PLDGR LP  +     +  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  132  pmkrppIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNIIAL  191
            +M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD N++ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  VGERGREVREFIEKDLGEEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGRNVM  251
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  FMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEQGTITAFYTVLV  311
            ++ DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E+G+ITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISDPAHIKAANK  371
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++   H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  FRDLLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTEE  419
            +R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ +E
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

202) fliI in NC_017191


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1212),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 194/408 (48%), Positives = 293/408 (72%), Gaps = 6/408 (1%)

Query  12   TADPYKRYGKVKRVIGLMIESKGPESSIGDVCLIYPKGHAKKAIKAEVVGFQDENILLMP  71
             +D Y R G+++ V + ++++  P   +G++C I P  +      AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSP  69

Query  72   YLEAASIAPGSIVEATGESLRIKVGAGLIGQVVDAFGEPLDGRALPKGLSPVSTEQpppn  131
            +  +A++  G  V A     ++ VG +L+G+V+D+FG PLDGR LP  +     +  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  132  pmkrppIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNIIAL  191
            +M R PI + +  G+R+IDS+ T G GQR+GIF+++GVGKSTL++M+ +  +AD N++ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  VGERGREVREFIEKDLGEEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGRNVM  251
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  FMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEQGTITAFYTVLV  311
            ++ DS+TR A A REI+LAAGE + +  Y P+VF+ LPRLLERTG  E+G+ITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNISDPAHIKAANK  371
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++   H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  FRDLLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTEE  419
            +R  L+ YQ+ E LI IG Y+RG   + D AI+ YP++  FL+Q+ +E
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

203) Calow_1860 in NC_014657


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1212),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 208/434 (48%), Positives = 305/434 (71%), Gaps = 7/434 (1%)

Query  3    DMLEKLKSKVENANFYQFTGFVNQVIGLTIESQGPAVSIGTLCRIKAAKTETLAEVVGFK  62
            +++++L+ K   ++ Y   G +++V +  +++  P+V +G LC IK++  E LAEVVG++
Sbjct  4    ELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPG--EELAEVVGIN  61

Query  63   ENKVLLMPYSDLVGVFPGCKVIAQDSIFEIKVGNELLGRILDGLGQPIDGKG--EIKSKI  120
             +K LL P++   G+  G +V+A     ++ VG+ LLGR++DG+G+P+DG+   E+  K 
Sbjct  62   GSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK-  120

Query  121  KYPVENRAPNPLERPRIDTIMPLGIKAIDALLTIGRGQRVGIFAGSGVGKSTLLGMIARN  180
             Y  +  +P ++ R  I   +  GI+AID++ T G GQRVGIF+++GVGKSTLL+M+   
Sbjct  121  DY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNA  178

Query  181  AKADVNVLALIGERGRELKEFLEKDLKDEGLKRSVVVVATSDESALKRVKAAYVAMAIAE  240
            + AD NVL LIGERGRE++EF++  L +E  KR V+VVATSD +AL RV+A +VA +IAE
Sbjct  179  PDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE  238

Query  241  YFRDQGLDVLFLMDSLTRFAMAQREIGLAVGEPPVSRGYTPSVFSIMPKLLERAGKNRNG  300
            +FRD+G  V++L DSLTR+A A REI+LA GE +VS  Y P+VFS +P+LLER+G   +G
Sbjct  239  FFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKG  298

Query  301  SITALFTVLVDGDDFNEPITDTARGILDGHIVLSRAIANKNHYPAIDVLASISRVMNDIV  360
            SITA++TVLV+GDD NEP++D  R++LDGHIVLSR +A++ HYPAIDVLA++SRV   + 
Sbjct  299  SITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVT  358

Query  361  EPFHRELANQTKRILAVYREAEDLINIGAYTKGSNPEIDRAIDLMPRINQFLRQEVDEKF  420
               HR+LA   +R LA+Y+E E LI IG Y +G + + D+AID  P I  FLRQ  DE  
Sbjct  359  SHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

Query  421  EFEETIQMLKGIIS  434
              E  I+ L  I++
Sbjct  419  GPELLIEKLHQILT  432

204) Tthe_1452 in NC_014410


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1212),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 191/417 (46%), Positives = 302/417 (73%), Gaps = 8/417 (1%)

Query  23   YGKVSQVVGLTIESIGPISNVGDVCEIKSINGNTIYAEVMGFKDDKVYLMPLGDMDGIGP  82
             G++ +V +  +++  P   +G++C IK+  G+ + AEV+G+++ K  L P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKP--GEEL-AEVVGINGSKALLSPFTSTAGLHC  78

Query  83   GNSVISTGQKLKIGVGEELLGRVIDALGNPIDGKG--PIKFKKLVSTNNVPPNPIERKRI  140
            G+ V++  ++ ++ VGE LLGRVID++G P+DG+    +  K     + +PP ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY---DAMPPPAMVRQPI  135

Query  141  REAMPLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARNAKSDINVIALIGERGRE  200
             +++  GI+AID++ TCG GQR+GIF+++GVGKSTLL+M+   + +D NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VNEFIEKDLGEDGLKRSILVVSTSDTPALMRVKGAMTATSIAEYFRDQGLDVLFMMDSVT  260
            V EFI+  L+E+  KR ++VV+TSD PAL RV++   AT+IAE+FRD+G  V+++ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RFAMAQREIGLSIGEAPVSRGYTPSVFSVLPKLLERAGSAKNGSITALYTVLVDGDDLNE  320
            R+A A REI+L+ GE++VS  Y P+VFS LP+LLER+G + +GSITA+YTVLV+GDD+NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  321  PITDAVRGILDGHIVLSRKLANKGQYPAIDILASISRVMNDIVSDEHKNLSSKFKSILSV  380
            P++D VR++LDGHIVLSR+LA++G+YPAID+LA++SRV   + S+EH++L++ ++  L++
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  381  YEESEDLINIGAYAKGSNPKIDEAILLHDDMINYIKQTTDENYNFEDELNMLKNILN  437
            Y+E E LI IG Y +G +   D AI    D+  +++Q+ DE    E  ++ L +IL 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

205) fliI in NC_014019


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1210),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 203/419 (49%), Positives = 295/419 (71%), Gaps = 5/419 (1%)

Query  11   PRTSSFKRYGKVSRVVGMMIESRGPRTSIGDVCFIHLSERGDKIRAEVVGFNGEHVILMP  70
            P   ++ R G++  V + +++++ P   +G++C I     G+ + AEVVG+NG   +L P
Sbjct  14   PPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIK---PGEEL-AEVVGINGSKALLSP  69

Query  71   YTSVRYIGPGCLVETTEKPLQVSVGKELIGQVLDSLGNPLDGSELSHYLPFVLTDQDPPN  130
            +TS   +  G  V +  +  QV+VG  L+G+V+D++G PLDG EL++ +     D  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCWKDYDAMPPP  128

Query  131  PLERPPIEQPIEVGVRTIDSLLTVGQGQRIGIFAGSGVGKSTLLGMIARNTKADINVIAL  190
            ++ R PI QP+  G+R+IDS+ T G+GQR+GIF+++GVGKSTLL+M+     AD NV+ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  191  VGERGREVREFIERDLGEEGLKRSVVVVATSDQPALLRMKAAYTATSIAEYFRDEGLSVM  250
            +GERGREVREFI+  L+EE  KR V+VVATSD+PAL R++A + AT+IAE+FRD+G  V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  251  MMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFASLPRLLERTGTNQHGSITAFYTVLV  310
            ++ DS+TR A A REI+LA GE + +  Y P+VF++LPRLLERTG  + GSITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  311  DGDDMNEPISDTVRGIIDGHIVLDRELANKGQYPAINVLKSVSRVMNHIVSERHKEAAEK  370
            +GDDMNEP++D VR+++DGHIVL R LA++G+YPAI+VL ++SRV   + S+ H++ A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  371  LRSLMATYANSEDLINIGAYKRGSSAYIDEAIHYHPVIDAFLKQKTNEHPSFETSVTKL  429
            LR  +A Y + E LI IG Y+RG  +  D AI+  P I +FL+Q  +E  + E  + KL
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

206) GTCCBUS3UF5_14130 in NC_016593


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  323 bits (1210),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 204/419 (49%), Positives = 290/419 (70%), Gaps = 5/419 (1%)

Query  2    YKRFGKVSRVIGLMMESKGPKSSIGDLCYIHEQSGCRKIPAEVVGFHEQHVLLMPFSAMS  61
            Y R G++  V + ++++  P   +G+LC I          AEVVG++    LL PF++ +
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTA  74

Query  62   HIAPGCFVEATGRPLEVHVGDALIGMVLDPLGQPLDGSPLPPGLKPVSVERDPPNPLVRP  121
             +  G  V A  R  +V VG+AL+G V+D +G+PLDG  LP  +     +  PP ++VR 
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPAMVRQ  133

Query  122  PIVEPLEVGIRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARHTSADVNVIALIGERG  181
            PI +PL  GIR IDS+ + G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  182  REVREFLERDLGPDGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDS  241
            REVREF++  L+ +   R V+VVATSD+PAL RV++ + AT+IAE+FRD+G  V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  242  VTRVAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDM  301
            +TR A A REI+LA GE + +  Y P+VF+ LP+LLER+G    G+ITAFYTVLV+GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  302  NEPIADAVRGILDGHFVLERQLANKGHYPAINVLKSVSRVMPHMISAEHREAANRFRRLL  361
            NEP+AD VR++LDGH+VL R+LA++GHYPAI+VL ++SRV P + S EHR+ A  +RR L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  362  STYIDSEDLIQIGAYKRGSSQEIDEAIEFYPQMMAFCRQNIDEKTTRAESIDALLRLLS  420
            + Y + E LI+IG Y+RG   + D AI+ YP++ +F RQ+ DE       I+ L ++L+
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

207) fliI in NC_006270


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  322 bits (1209),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 193/407 (48%), Positives = 286/407 (71%), Gaps = 6/407 (1%)

Query  11   TADSYKRYGKVKQAVGLMIESKGPECSIGDVCKIYTKGDGPKAIKAEVVGFKDQNILLMP  70
             +D+Y R G++++  + ++++  P   +G++C I      P    AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI-----KPGEELAEVVGINGSKALLSP  69

Query  71   YLEAANIAPGSIVEATGESLRVKVGSGLIGQVVDAFGNPLDGSVLPKGLAQVSTDQAPPN  130
            +  +A +  G  V A     +V VG +L+G+V+D+FG PLDG  LP  +     D  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  131  PMKRPPIREKMAVGVRSIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARETAADLNVIAL  190
            +M R PI + +  G+R+IDS+ T G GQRVGIF+++GVGKSTL++M+     AD NV+ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  191  VGERGREVREFIEKDLGEEGLKRTIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVM  250
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  251  FMMDSVTRVAMAQREIGLATGEPPTTKGYTPSVFAILPKLLERTGTTESGSITAFYTVLV  310
            ++ DS+TR A A REI+LA+GE + +  Y P+VF+ LP+LLERTG  E GSITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  311  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNIAEKDHIRAANR  370
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++  +H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  371  FREMLSTYQNSEDLINIGAYKKGSSREIDEAIQFHPKLISFLKQEVD  417
            +R  L+ YQ+ E LI IG Y++G   + D AI+  P + +FL+Q  D
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD  415

208) fliI in NC_006322


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  322 bits (1209),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 193/407 (48%), Positives = 286/407 (71%), Gaps = 6/407 (1%)

Query  11   TADSYKRYGKVKQAVGLMIESKGPECSIGDVCKIYTKGDGPKAIKAEVVGFKDQNILLMP  70
             +D+Y R G++++  + ++++  P   +G++C I      P    AEVVG+++ + LL P
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI-----KPGEELAEVVGINGSKALLSP  69

Query  71   YLEAANIAPGSIVEATGESLRVKVGSGLIGQVVDAFGNPLDGSVLPKGLAQVSTDQAPPN  130
            +  +A +  G  V A     +V VG +L+G+V+D+FG PLDG  LP  +     D  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPP  128

Query  131  PMKRPPIREKMAVGVRSIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARETAADLNVIAL  190
            +M R PI + +  G+R+IDS+ T G GQRVGIF+++GVGKSTL++M+     AD NV+ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  191  VGERGREVREFIEKDLGEEGLKRTIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVM  250
            +GERGREVREFI+  L+EE  KR ++VVATSD+PAL R++A + AT+IAE+FRD+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  251  FMMDSVTRVAMAQREIGLATGEPPTTKGYTPSVFAILPKLLERTGTTESGSITAFYTVLV  310
            ++ DS+TR A A REI+LA+GE + +  Y P+VF+ LP+LLERTG  E GSITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  311  DGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNIAEKDHIRAANR  370
            +GDDMNEP+AD VR++LDGHIVL R LA++G++PA+++L ++SRV + ++  +H + A  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  371  FREMLSTYQNSEDLINIGAYKKGSSREIDEAIQFHPKLISFLKQEVD  417
            +R  L+ YQ+ E LI IG Y++G   + D AI+  P + +FL+Q  D
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD  415

209) BTI_1915 in NC_021173


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  322 bits (1207),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 225/415 (55%), Positives = 313/415 (76%), Gaps = 2/415 (0%)

Query  23   APVAHTRFGRVTEVGPTLVRATLPHVGLAELCRLEPAGIDAEVVSIEGDTALLSPFAEPR  82
            +P +  R GR+ +V++TL+ A LP V ++ELC + P+   AEVV+I+G  ALLSPF+   
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTA  74

Query  83   GIAAGCAVRPLGRAHRIPVGTFllgrvvdglgrlFDHGPDVPDSATWVDLARSAPDPLRR  142
            G+  G  V +L R H++PVG  LLGRV+DG+GR +D G ++P+   W D    +P ++ R
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRELPE-VCWKDYDAMPPPAMVR  132

Query  143  AIIDTPLPLGVRAIDGLLTCGRGQRVGIFAAAGGGKSTLLGMICDGSLADVTVLALIGER  202
              I  PL  G+RAID++ TCG GQRVGIF+A+G GKSTLL+M+C+++ AD  VL LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  203  GREVREFLEHTLTPEARARAIVVVATSDRPALERLKAAYTATAIAEHFRDQGRDVLLMMD  262
            GREVREF++ TL+ E+R R ++VVATSDRPALER++A + AT+IAE FRD+G+ V+L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  263  SLTRFARAAREIGLAAGEKPAAGSYPPSFFARLPGLLERAGPAATGSITGLYTVLVEGDN  322
            SLTR+ARAAREI+LAAGE + +G YPP+ F+ LP LLER+G +  GSIT++YTVLVEGD+
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  323  LNEPVADEVRSILDGHIVLSRKLAEANHYPAIDVGASVSRVMSQIVATrhrdgaarlrrl  382
            +NEP+ADEVRS+LDGHIVLSR+LAE  HYPAIDV A++SRV + + +  HR+ AA LRR 
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  383  daVYRDIELLVRVGEYRHGADPEADDALARREAIRQFLCQSVTDKTSFDQTLEQL  437
             A+Y+++ELL+R+GEY++G D ++D A+     I  FL QS  +  + +  +E+L
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

210) hrcN in NC_016010


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  322 bits (1208),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 206/405 (51%), Positives = 299/405 (74%), Gaps = 7/405 (1%)

Query  24   RYGKVVEVVGTMLKVAGVQVSLGEVCELRQRDGSLLQRAEVVGFSRDLALLAPFGELIGL  83
            R G++ +V +T+L+     V +GE+C ++  +    + AEVVG++   ALL+PF    GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  84   SRETRVIGLGRPLAVPVGPALLGRVLDGLGEPSDGQG-AIACDTWVPIQAQAPDPMRRRL  142
                +V++L R   VPVG ALLGRV+DG+G P DG+  +  C  W   +A +P +M R+ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMVRQP  134

Query  143  IEHPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGR  202
            I +P+ TG+R +D++ T GEGQR+GIF+A+GVGKSTL++M+  + + D NV+VLIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  203  EVREFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSL  262
            EVREFI++ L+ +   R V+V ATSDR+++ER +A +V+T+IAE+FRD G RV+L+ DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  263  TRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGS  322
            TR+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GMGE GSITAFYTVL E+D  +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  323  DPIAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSDHSQAAGRLRRLLA  382
            +P+A+EVR++LDGH++LSR +A + +YPAIDVLA+LSRV + + + +H Q A+ LRR LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  383  KYNEVETLVQVGEYRQGSdavadeaidridairdFLSQPTDQLSA  427
             Y+EVE L+++GEY++G D+ +D AID    I  FL Q+ D++ +
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

211) hrcN in NC_007508


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  322 bits (1207),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 209/419 (50%), Positives = 305/419 (73%), Gaps = 7/419 (1%)

Query  24   RYGKVVEVVGTMLKVAGVQVSLGEVCELRQRDGTLLQRAEVVGFSRDLALLAPFGELIGL  83
            R G++ +V +T+L+     V +GE+C ++  +    + AEVVG++   ALL+PF    GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  84   SRETRVIGLGRPLAVPVGPALLGRVLDGLGEPSDGQG-AIACDTWVPIQAQAPDPMRRRL  142
                +V++L R   VPVG ALLGRV+DG+G P DG+  +  C  W   +A +P +M R+ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMVRQP  134

Query  143  IEHPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGR  202
            I +P+ TG+R +D++ T GEGQR+GIF+A+GVGKSTL++M+  + + D NV+VLIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  203  EVREFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSL  262
            EVREFI++ L+ +   R V+V ATSDR+++ER +A +V+T+IAE+FRD G RV+L+ DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  263  TRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGS  322
            TR+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GMGE GSITAFYTVL E+D  +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  323  DPIAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPYDHSQAAGRLRRLLA  382
            +P+A+EVR++LDGH++LSR +A + +YPAIDVLA+LSRV + + + +H Q A+ LRR LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  383  KYNEVETLVQVGEYRQGSdavadeaidridairdFLSQPTDQLSAYENTLELLTSVTDD  441
             Y+EVE L+++GEY++G D+ +D AID    I  FL Q+ D++ + E  +E L  +  +
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

212) fliI in NC_022097


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  322 bits (1208),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 203/415 (49%), Positives = 293/415 (71%), Gaps = 9/415 (2%)

Query  22   GRVVRVHGMLIESEGPVAVVGELCQIITDDKPKGLKAEVVGLNGNIVQLMSFTDVQGVKV  81
            GR+  V + L+++  P   +GELC I    KP    AEVVG+NG+   L +FT   G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI----KPGEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  82   GDAVIASGEILSIPVGNVLLGRVVDSLCQSADGK--PEPYSDIRYPVTASPPDPMKRKPI  139
            G+ V+A      +PVG+ LLGRV+D++ ++ DG+  PE      Y   A PP +M R+PI
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK-DY--DAMPPPAMVRQPI  135

Query  140  RQRIVTGIRAIDGLLAVGRGQRLGIFSGSGIGKSTLLGMIARNTNADVNVIALIGERGRE  199
             Q ++TGIRAID++ + G GQR+GIFS++G+GKSTLL+M+    +AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  200  VVDFIEHDLGPEGLKHSVIVTATSDQSPLARIRGAYTATAIAEYFRDRGKDVMLLFDSVT  259
            V +FI+  L+ E  K+ VIV ATSD+++L R+R+ + AT+IAE+FRD GK V+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  260  RFARAQREIGLAIGEPPATRGYTPSVFETMPKLLERSGTSDKGSITGFYTVLVDGDDMDE  319
            R+ARA REI+LA GE + +  Y P+VF ++P+LLER+G ++KGSIT+FYTVLV+GDDM+E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  320  PISDTVRGILDGHIVLERRLAQRGQYPAINVLRSISRLANRVAGENTKKAVTRARNLLAA  379
            P++D VR++LDGHIVL RRLA+RG+YPAI+VL ++SR+   V++++ ++  +  R  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YTESEDMILVGAYQKGSDANIDDAIEHYPLIYDFLTQDVNDPAKLEDTLKKLSEI  434
            Y E E +I +G YQ+G D++ D AI+ YP I  FL Q  ++    E  + KL +I
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

213) fliI in NC_014614


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  322 bits (1207),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 201/419 (48%), Positives = 292/419 (70%), Gaps = 7/419 (1%)

Query  18   YQYKGKVSRVIGLTIESRGPAVRLGETCHIYPIKSKEPVLAEVVGFKEDTVLLMPLGEME  77
            Y   G++  V +  ++++ P+V +GE C    IK+ E  LAEVVG++    LL P+    
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELC---CIKPGEE-LAEVVGINGSKALLSPFTSTA  74

Query  78   GIGPGSMVVATGNTLEVDVGEQLLGRILDGMGNPIDDFEPPSLNY-SYPVNNQPPNPLSR  136
            G+  G  V+A     +V VGE LLGR++DG G P+D+ E P +    Y  +  PP ++ R
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVR  132

Query  137  TKISEPLPLGVKAIDGFLTCGRGQRIGIFAGSGVGKSTLLGMIARNTLADINVIALIGER  196
              I++PL  G++AID+  TCG GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  197  GREVKEFIDNDLEEEGLKKSVVIVVTSDQPPLVRMKGALLATSIAEYFRDCGKNVVLMMD  256
            GREV+EFID  L EE  K+ V++V TSD+P+L R+++ ++AT+IAE+FRD GK VVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  257  SLTRFSMAQREVGLAIGEPPVTKGYTPSVFAVLPKLLERAGNSSKGSITGLYTVLVDGDD  316
            SLTR++ A RE++LA GE +V+  Y P+VF+ LP+LLER+G + KGSIT++YTVLV+GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  317  MNEPIADAVRGILDGHIVLSRNLANKNHYPAIDILASVSRVMPNIVDKEHIDIVGRIKDL  376
            MNEP+AD VR++LDGHIVLSR LA++ HYPAID+LA++SRV P +   EH ++ + ++  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  377  MATYRDSEDLINIGAYIKGTNKKVDMAIEKIEIINEFLRQGIHDRLTFDEIVELLRGIL  435
            +A Y++ E LI IG Y +G +   D AI+    I  FLRQ+ ++    + ++E L+ IL
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

214) hrcN in NC_003919


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  322 bits (1206),  Expect = 4e-89, Method: Compositional matrix adjust.
 Identities = 209/419 (50%), Positives = 305/419 (73%), Gaps = 7/419 (1%)

Query  24   RYGKVVELVGTMLKVAGVQVSLGEVCELRQRDGTLLQRAEVVGFSRDLALLAPFGELVGL  83
            R G++ ++ +T+L+     V +GE+C ++  +    + AEVVG++   ALL+PF    GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  84   SRETRVIGLGRPLAVPVGPALLGRVLDGLGEPSDGQG-AIACDTWVPIQAQAPDPMRRRL  142
                +V++L R   VPVG ALLGRV+DG+G P DG+  +  C  W   +A +P +M R+ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMVRQP  134

Query  143  IEQPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGR  202
            I QP+ TG+R +D++ T GEGQR+GIF+A+GVGKSTL++M+  + + D NV+VLIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  203  EVREFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSL  262
            EVREFI++ L+ +   R V+V ATSDR+++ER +A +V+T+IAE+FRD G RV+L+ DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  263  TRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGS  322
            TR+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GMGE GSITAFYTVL E+D  +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  323  DPIAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSDHSQAAGRLRRLLA  382
            +P+A+EVR++LDGH++LSR +A + +YPAIDVLA+LSRV + + + +H Q A+ LRR LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  383  KYNEVETLVQVGEYRQGSdavadeaidridairdFLSQPTDRLSAYESTLEQLASVTDD  441
             Y+EVE L+++GEY++G D+ +D AID    I  FL Q+ D + + E  +E+L  +  +
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

215) XAC29_02110 in NC_020800


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  322 bits (1206),  Expect = 4e-89, Method: Compositional matrix adjust.
 Identities = 209/419 (50%), Positives = 305/419 (73%), Gaps = 7/419 (1%)

Query  24   RYGKVVELVGTMLKVAGVQVSLGEVCELRQRDGTLLQRAEVVGFSRDLALLAPFGELVGL  83
            R G++ ++ +T+L+     V +GE+C ++  +    + AEVVG++   ALL+PF    GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  84   SRETRVIGLGRPLAVPVGPALLGRVLDGLGEPSDGQG-AIACDTWVPIQAQAPDPMRRRL  142
                +V++L R   VPVG ALLGRV+DG+G P DG+  +  C  W   +A +P +M R+ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMVRQP  134

Query  143  IEQPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGR  202
            I QP+ TG+R +D++ T GEGQR+GIF+A+GVGKSTL++M+  + + D NV+VLIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  203  EVREFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSL  262
            EVREFI++ L+ +   R V+V ATSDR+++ER +A +V+T+IAE+FRD G RV+L+ DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  263  TRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGS  322
            TR+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GMGE GSITAFYTVL E+D  +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  323  DPIAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSDHSQAAGRLRRLLA  382
            +P+A+EVR++LDGH++LSR +A + +YPAIDVLA+LSRV + + + +H Q A+ LRR LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  383  KYNEVETLVQVGEYRQGSdavadeaidridairdFLSQPTDRLSAYESTLEQLASVTDD  441
             Y+EVE L+++GEY++G D+ +D AID    I  FL Q+ D + + E  +E+L  +  +
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

216) hrcN in NC_020815


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  322 bits (1206),  Expect = 4e-89, Method: Compositional matrix adjust.
 Identities = 209/419 (50%), Positives = 305/419 (73%), Gaps = 7/419 (1%)

Query  24   RYGKVVELVGTMLKVAGVQVSLGEVCELRQRDGTLLQRAEVVGFSRDLALLAPFGELVGL  83
            R G++ ++ +T+L+     V +GE+C ++  +    + AEVVG++   ALL+PF    GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  84   SRETRVIGLGRPLAVPVGPALLGRVLDGLGEPSDGQG-AIACDTWVPIQAQAPDPMRRRL  142
                +V++L R   VPVG ALLGRV+DG+G P DG+  +  C  W   +A +P +M R+ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMVRQP  134

Query  143  IEQPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGR  202
            I QP+ TG+R +D++ T GEGQR+GIF+A+GVGKSTL++M+  + + D NV+VLIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  203  EVREFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSL  262
            EVREFI++ L+ +   R V+V ATSDR+++ER +A +V+T+IAE+FRD G RV+L+ DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  263  TRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGS  322
            TR+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GMGE GSITAFYTVL E+D  +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  323  DPIAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSDHSQAAGRLRRLLA  382
            +P+A+EVR++LDGH++LSR +A + +YPAIDVLA+LSRV + + + +H Q A+ LRR LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  383  KYNEVETLVQVGEYRQGSdavadeaidridairdFLSQPTDRLSAYESTLEQLASVTDD  441
             Y+EVE L+++GEY++G D+ +D AID    I  FL Q+ D + + E  +E+L  +  +
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

217) fliI in NC_017294


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  321 bits (1205),  Expect = 5e-89, Method: Compositional matrix adjust.
 Identities = 199/381 (53%), Positives = 279/381 (74%), Gaps = 7/381 (1%)

Query  40   FVGEICYIYNEYNERIECEVVGINQERSILMPFGDVRGISTGSKVIATKKLLTVKISDEL  99
            F+GE+C I     E +  EVVGIN  +++L PF    G+  G +V+A ++   V +++ L
Sbjct  41   FMGELCCIKP--GEELA-EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  100  LGCVLDGLGRVQIGRS-PEN-YTEFTIDNKPPIAMKRREITEIMQTGVRVIDGTLTCGVG  157
            LG V+DG+GR   GR  PE    ++  D  PP AM R+ IT+ + TG+R ID+  TCG G
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  158  QRVGIFAGSGVGKSTLMGMLARNASADVNVIGLIGERGRELKEFIYHDLGEEGLRKSVVV  217
            QRVGIF+++GVGKSTL++ML   + AD NV+ LIGERGRE++EFI   L+EE  ++ V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  218  CATSDEPALIRFKASLVTTAIAEYFREQGKNVILMMDSVTRFAMAQREVGLAIGEPPATK  277
             ATSD PAL R +A +V+T+IAE+FR++GK V+L+ DS+TR+A A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  278  GYTPSVFALLPKLLERTGPSESGAITAFYTVLVDGDDMNDPIADTVRGILDGHIVLSRAL  337
             Y P+VF+ LP+LLERTG +E G+ITAFYTVLV+GDDMN+P+AD VR++LDGHIVLSR L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  338  AHKNHYPAIDVLKSVSRLMSKITSDEHKQLAGTIRNLLAVYQDAEDLINIGAYVHGSNPD  397
            A++ HYPAIDVL ++SR+ + +TS+EH+QLA+ +R  LA+YQ+ E LI IG Y +G + D
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  398  IDKAIQYINQINEYLKQSTTE  418
             DKAI+   +I  +L+QS  E
Sbjct  396  TDKAIDTYPDICTFLRQSKDE  416

218) Selsp_1699 in NC_015437


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  321 bits (1205),  Expect = 5e-89, Method: Compositional matrix adjust.
 Identities = 198/398 (50%), Positives = 286/398 (72%), Gaps = 8/398 (2%)

Query  62   GKIVQVIGLVIESAGPNVSMGELCYVKSRFPHVEPIPAEVVGFRDGHVLLMPIGEMQGIG  121
            G+I +V + ++++  P V MGELC +K+         AEVVG+ ++  LL P+    G+ 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKP-----GEELAEVVGINGSKALLSPFTSTAGLH  77

Query  122  PGCEVVSAQKTLQVQVGPELLGRVLDGLGEPIDGKG-PLLCKHEYPLQADPPSPLERPRI  180
             G +V++ ++  QV VG  LLGRV+DG+G P+DG+  P +C  +Y  +A PP+++ R  I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPI  135

Query  181  RDSLYVGVRAIDGLITLGDGQRIGIMAGSGVGKSTLLSMIARNTEADISVIALVGERGRE  240
             ++L  G+RAID++ T G+GQR+GI +++GVGKSTLL+M+    +AD +V+ L+GERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  241  VKEFIERDLGEEGLKRSVVVVATSDKPALVRIKGAMTATAIAEYFRDQGKRVVLMMDSVT  300
            V+EFI+  L+EE  KR V+VVATSD+PAL R+++   AT+IAE+FRD+GKRVVL+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  301  RFAMAQREVGLTIGEPPATRGYTPSVFALLPRLLERAGTSRKGSITGIYTVLVDGDDMNE  360
            R+A A RE++L+ GE + +  Y P+VF+ LPRLLER+G + KGSIT++YTVLV+GDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  361  PIADAVRSILDGHIVLSRAIAAQNHFPAIDVLASVSRVMNEVVDEAHLKASQNLRALMAV  420
            P+AD VRS+LDGHIVLSR +A + H+PAIDVLA++SRV   V  + H + +  LR  +A+
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  421  YKEAEDLIHIGAYVKGSSQKIDTAVAKIDAINDFLRQG  458
            Y+E E LI+IG Y +G     D A+     I  FLRQ+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

219) fliI in NC_017464


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  321 bits (1204),  Expect = 5e-89, Method: Compositional matrix adjust.
 Identities = 193/416 (47%), Positives = 293/416 (71%), Gaps = 7/416 (1%)

Query  22   SGKVNDVIGLVIVSAGPNVSLGEICSIIDRNGNEVCKSEVVGFKDGKVLSVALGEVQNIS  81
             G+++DV + ++ +  P V +GE+C I  + G+E+  +EVVG++++K L  ++     + 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL--AEVVGINGSKALLSPFTSTAGLH  77

Query  82   PKSEIIAEGKSFSVGVGKELLGRVIDGLGNPIDGKGELKVTSYRSIYREAPNP-LQRKRI  140
               +++A  +   V VG  LLGRVIDG+G P+DG+ EL     +  Y   P P + R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKD-YDAMPPPAMVRQPI  135

Query  141  ETPLQTGVRAIDGLLTIGKGQRMGIFAGSGVGKSVTLGMIARNTNADVNVITLIGERGRE  200
              PL TG+RAID++ T G GQR+GIF+++GVGKS  L+M+    +AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VREFIERDLGEEGLQRSVVVVATSDKSALIRMKGAYIGTTIAEYFRDLGMDVLLMMDSVT  260
            VREFI+  L+EE  +R V+VVATSD++AL R+++ +++TTIAE+FRD G  V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RFAMAQREIGLAIGEPPTTKGYTPSVFATLPKLLERAGTSDKGSITGLYNVLVDGDDLTE  320
            R+A A REI+LA GE + +  Y P+VF++LP+LLER+G ++KGSIT++Y VLV+GDD+ E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  321  PIADAARSILDGHIVLSRRLANSGQFPAVDPLQSVSRVMPDITTNDHRERIKIFNEILAT  380
            P+AD  RS+LDGHIVLSRRLA+ G++PA+D L ++SRV P +T+++HR+   I+   LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  381  YKEAEDLINIGAYVKGSNPAIDHALSKISQLKSFLRQDMFEKTDFNSTIKRLNEII  436
            Y+E E LI IG Y +G +   D A+   +++ +FLRQ   E  + +  I +L++I+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

220) SFBM_0957 in NC_015913


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  321 bits (1204),  Expect = 6e-89, Method: Compositional matrix adjust.
 Identities = 199/381 (53%), Positives = 279/381 (74%), Gaps = 7/381 (1%)

Query  40   FVGEICYIYNEYNERIECEVVGINQERSILMPFGDVRGISTGSKVIATKKLLTVKISDEL  99
            F+GE+C I     E +  EVVGIN  +++L PF    G+  G +V+A ++   V +++ L
Sbjct  41   FMGELCCIKP--GEELA-EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  100  LGCVLDGLGRVQIGRS-PEN-YTEFTIDNKPPIAMKRREITEIMQTGVRVIDGTLTCGVG  157
            LG V+DG+GR   GR  PE    ++  D  PP AM R+ IT+ + TG+R ID+  TCG G
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  158  QRVGIFAGSGVGKSTLMGMLARNASADVNVIGLIGERGRELKEFIYHDLGEEGLRKSVVV  217
            QRVGIF+++GVGKSTL++ML   + AD NV+ LIGERGRE++EFI   L+EE  ++ V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  218  CATSDEPALIRFKASLVTTAIAEYFREQGKNVILMMDSVTRFAMAQREVGLAIGEPPATK  277
             ATSD PAL R +A +V+T+IAE+FR++GK V+L+ DS+TR+A A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  278  GYTPSVFALLPKLLERTGPSESGAITAFYTVLVDGDDMNDPIADTVRGILDGHIVLSRAL  337
             Y P+VF+ LP+LLERTG +E G+ITAFYTVLV+GDDMN+P+AD VR++LDGHIVLSR L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  338  AHKNHYPAIDVLKSVSRLMSKITSDEHKQLAGTVRNLLAVYQDAEDLINIGAYVHGSNPD  397
            A++ HYPAIDVL ++SR+ + +TS+EH+QLA+ +R  LA+YQ+ E LI IG Y +G + D
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  398  IDKAIQYINQINEYLKQSTTE  418
             DKAI+   +I  +L+QS  E
Sbjct  396  TDKAIDTYPDICTFLRQSKDE  416

221) Varpa_4973 in NC_014931


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  321 bits (1204),  Expect = 6e-89, Method: Compositional matrix adjust.
 Identities = 210/399 (53%), Positives = 299/399 (75%), Gaps = 4/399 (1%)

Query  37   RGRVSKAVGTLIDATGIQAHVGELVELVTPGEPPLLAEVVGFRGNTAVLTPLGPITGISA  96
            +GR+    +TL++A      +GEL   + PGE   LAEVVG+ G+ A+L+P+ + +G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCC-IKPGEE--LAEVVGINGSKALLSPFTSTAGLHC  78

Query  97   LTEVVPTGGGHSCPVGSQLLGRVLDAMGQPIDGRGGLAAAARQPVHREPVNPLARRMIDA  156
              +V++    H  PVG  LLGRV+D+ G+P+DGR  L+   ++  +  P  ++ R+ I  
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQ  137

Query  157  PLPTGIRAIDALLTLGEGQRIGVFSPPGVGKSTLLGMLARGSSADVNVIALIGERGREVK  216
            PL TGIRAID++ T GEGQR+G+FS+PGVGKSTLL+ML  ++ AD NV+ LIGERGREV+
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  217  EFIEHSLGPEGMAKSVIVVSTSERPPMERIKSAHVATTIAEYFRDQGKKVLLLMDSLSRF  276
            EFI+ +L+ E   + VIVV+TS+RP++ER+++  VATTIAE+FRD+GK+V+LL DSL+R+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  277  ARAQREIGLASGEPPTRRSYPPSIFSMLPQLLERAGQGESGSITAIYSVLTEGDEENDPI  336
            ARA REI+LA+GE +    YPP++FS LP+LLER+G GE GSITA+Y+VL EGD+ N+P+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  337  AEEVRSILDGHVVLSRKLAAANRYPAIDVLASISRVMPLVTDPahraaaahlrellSKYQ  396
            A+EVRS+LDGH+VLSR+LA   +YPAIDVLA++SRV P+VT   HR  AA LR  L+ YQ
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  397  EMELLVQIGEYKPGGdaqadaavrarpaILEFLAQAPGQ  435
            E+ELL++IGEY+ G D+++D A+ + P I  FL Q+ ++
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

222) fliI in NC_013260


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  321 bits (1205),  Expect = 6e-89, Method: Compositional matrix adjust.
 Identities = 204/412 (50%), Positives = 296/412 (72%), Gaps = 9/412 (2%)

Query  25   GKVTKVVGLVIEAVGQEAFIGELCRIRSAGRHDVWAEVVGFHGEILLLMPLGEIHGIRPG  84
            G++  V + +++A     F+GELC I+++      AEVVG++G   LL P+    G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVVAAGRPFEVPVGRSMLGRVVNGLGRPIDGKAPVEVEARC--SVHRQPPSPMTRAPII  142
             +V+A  R  +VPVG ++LGRV++G+GRP+DG+   EV   C    +  PP++M R PI 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV---CWKDYDAMPPPAMVRQPIT  136

Query  143  EPLATGIRVIDGLLTCGKGQRVGIFAGSGVGKSTLLGMIARYTEADVNVIALVGERGREV  202
            +PL TGIR ID++ TCG GQRVGIF+++GVGKSTLL+M+    +AD NV+ L+GERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  203  REFITKELGEDGLRRSVVVVATSNEPSLLRRQAAYVATAIAEYFRDQGKHVLLMMDSLTR  262
            REFI   L+E+  +R V+VVATS+ P+L R +A +VAT+IAE+FRD+GK+V+L+ DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  263  FALAQREIGLSVGEPPTTRGYPPSAFAMLPGLLERAGTADHGGSITGLYTILVEGDDMNE  322
            +A A REI+L+ GE + +  YPP+ F+ LP LLER+G ++  GSIT++YT+LVEGDDMNE
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDDMNE  315

Query  323  PVADHARAILDGHIVLTRELAERNHYPPVDFLGSVSRLMSVVAPREVRAAASKLRELLAA  382
            P+AD+ R++LDGHIVL+R LAER HYP++D L+++SR+ +VV+++E R  A+ LR  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  HRQAQDLINIGAYVSGSNPKVDEALRYMTPIEAFLRQSSDERSDFPGMVERL  434
             ++ + LI IG Y  G +   D A+     I +FLRQS DE  +   ++E+L
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

223) Thexy_1329 in NC_015555


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  321 bits (1204),  Expect = 6e-89, Method: Compositional matrix adjust.
 Identities = 189/416 (46%), Positives = 296/416 (72%), Gaps = 6/416 (1%)

Query  23   YGKVSQVVGLTIESVGPISNIGDVCEIRSINGTTVYAEVMGFKDDKVYLMPLGDMDGIGP  82
             G++ +V +  +++  P   +G++C    I+     AEV+G+++ K  L P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELC---CIKPGEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  83   GNSVVSTGQKLKIGVGKELLGRVIDALGNPIDGKG-AIKCKKLVSTNNTPPNPIERKRIS  141
            G+ V++  ++ ++ VG  LLGRVID++G P+DG+  +  C K    +  PP ++ R+ I+
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK--DYDAMPPPAMVRQPIT  136

Query  142  EVMTLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARNAKSDINVIALIGERGREV  201
            + +  GI+AID++ TCG GQR+GIF+++GVGKSTLL+M+   + +D NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  202  NEFIEKDLGEDGLKRSILVVSTSDTPALMRVKGAMAATSIAEYFRDQGLDVLLMMDSVTR  261
             EFI+  L+E+  KR ++VV+TSD PAL RV++   AT+IAE+FRD+G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  262  FAMAQREIGLSIGEAPVSRGYTPSVFSVLPKLLERAGSSKHGSITALYTVLVDGDDLNEP  321
            +A A REI+L+ GE++VS  Y P+VFS LP+LLER+G +  GSITA+YTVLV+GDD+NEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  322  ITDAVRGILDGHIVLSRKLANKGQYPAIDVLSSISRVMNDIVTDEHKNLSLRFKNILSVY  381
            ++D VR++LDGHIVLSR+LA++G+YPAIDVL+++SRV   + ++EH++L+  ++  L++Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  EESEDLINIGAYAKGSNPKIDEAILLHDDMINYIKQSTNEKYDFDDEINMLKNILN  437
            +E E LI IG Y +G +   D AI    D+  +++QS +E  + +  I+ L +IL 
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

224) NH44784_014581 in NC_021285


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  321 bits (1203),  Expect = 7e-89, Method: Compositional matrix adjust.
 Identities = 207/406 (51%), Positives = 294/406 (73%), Gaps = 17/406 (4%)

Query  25   GRVTQVIGTIIKAVVPSVKVGEVCILRNPGENFEMKGEVVGFARDAALLTPIGDMYGIST  84
            GR+ +V +T+++A +P+V +GE+C ++ PGE++   +EVVG+    ALL+P+    G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  85   ATEVIPTGRAHMvpvgpgllgrvldglgrpldEAERGPLEASKF----YPVFAEAPDP-L  139
            + +V++  R H           V ++L   + ++   PL++  +       +   P P +
Sbjct  79   GQQVMALRRRH--------QVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAM  130

Query  140  KRRIISQPLELGVRALDSVLTCGEGQRMGIFAAAGGGKSTLMGMLVKGAAVDVTVVALIG  199
             R+ I+QPL  G+RA+DSV TCGEGQR+GIF+A+G GKSTL++ML +++  D  V+ LIG
Sbjct  131  VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG  190

Query  200  ERGREVREFLEHELGREGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGKRVLFL  259
            ERGREVREF++  L+ E R++ VIV ATSD++++ER +A +VAT+IAE+FRD+GKRV++L
Sbjct  191  ERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLL  250

Query  260  MDSVTRFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNEHGSITALYTVLVEG  319
             DS+TR+ARA REI+LAAGE +    YPP+VF++LP+L+ER+GM E GSITA+YTVLVEG
Sbjct  251  ADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEG  310

Query  320  DDMTEPIADETRSILDGHIVLSRKLGAANHYPAIDVLASASRVMNAVITPEHKRAAGRLR  379
            DDM EP+ADE RS+LDGHIVLSR+L+   HYPAIDVLA+ SRV   V + EH++ A+ LR
Sbjct  311  DDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILR  370

Query  380  ELMAKYQEVELLVKIGEYKRGGDAVTDEAIDKIGAINQFLRQRTDE  425
              +A YQEVELL++IGEY+RG D+ TD AID    I  FLRQ  DE
Sbjct  371  RRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

225) COPRO5265_0319 in NC_011295


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  321 bits (1203),  Expect = 7e-89, Method: Compositional matrix adjust.
 Identities = 203/416 (49%), Positives = 295/416 (71%), Gaps = 9/416 (2%)

Query  22   YGKVLNVSGLSIEALTPASFVGELCSVNRFDGKPMFAEVVGFKEGKTLLMPIGDVQGIGP  81
             G++ +VS+  ++A  P+ F+GELC ++  +    +AEVVG++ +K+LL P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHC  78

Query  82   NSLIRAMGRPLWIKVSDGLVGRVVNAIGEPLDDKG--PVYGEKRSVYQD-PPHPLKRKII  138
               + A+ R   + V+++L+GRV++++G PLD++    V    +  Y+  PP ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPI  135

Query  139  TEPLQTSIKAIDGLLTVGKGQRVGIFAGSGVGKSTLLGMIARNSSADVNVIILVGERGRE  198
            T+PL T+I+AID++ T G GQRVGIF+++GVGKSTLL+M+   + AD NV++L+GERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  199  VRKFIEEDLTEEGAKRSVVVVATSDQPALLRVKAVLTGMTIAEYFRDQGKDVLVMMDSVT  258
            VR FI+  L+EE  KR V+VVATSD+PAL RV+A++ + TIAE+FRD+GK V+++ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  259  RLAMAQREVGLSIGEPPTTRGYTPSVFALLPKILERAGNSDKGSITAFITVLVEGDDMNE  318
            R A A RE++L+ GE + +  Y P+VF+ LP++LER+G ++KGSITAF TVLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  319  PVADAVRSILDGHIVLSRALAHRAHYPAIDVLQSISRVMNDVVSAKHLKLANRMRELLAV  378
            P+AD VRS+LDGHIVLSR LA+R+HYPAIDVL ++SRV   V S  H +LA  +R  LA+
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  379  YTEAEDLINIGAYQRGNNPKIDEALDYIDAINHFLLQQVKESYTLEQTVSLMEEVL  434
            Y E E LI IG YQRG +   D A+D    I  FL Q   E    E  +  ++++L
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

226) hrcN in NC_017267


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  320 bits (1199),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 209/416 (51%), Positives = 304/416 (74%), Gaps = 7/416 (1%)

Query  24   RYGKVVEVVGTMLKVAGVQVSLGEVCELRQRDGTLLQRAEVVGFSRDLALLAPFGELIGL  83
            R G++ +V +T+L+     V +GE+C ++  +    + AEVVG++   ALL+PF    GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  84   SRETRVIGLGRPLAVPVGPALLGRVLDGLGEPSDGQG-AIACDTWVPIQAQAPDPMRRRL  142
                +V++L R   VPVG ALLGRV+DG+G P DG+  +  C  W   +A +P +M R+ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMVRQP  134

Query  143  IEHPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGR  202
            I +P+ TG+R +D++ T GEGQR+GIF+A+GVGKSTL++M+  + + D NV+VLIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  203  EVREFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSL  262
            EVREFI++ L+ +   R V+V ATSDR+++ER +A +V+T+IAE+FRD G RV+L+ DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  263  TRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGS  322
            TR+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GMGE GSITAFYTVL E+D  +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  323  DPIAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSYHSQAAGRLRRLLA  382
            +P+A+EVR++LDGH++LSR +A + +YPAIDVLA+LSRV + + +  H Q A+ LRR LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  383  KYNEVETLVQVGEYRQGSdavadeaidridairdFLSQPTDQLSDYESTLEQLASV  438
             Y+EVE L+++GEY++G D+ +D AID    I  FL Q+ D++ + E  +E+L  +
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

227) Trebr_0967 in NC_015500


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  320 bits (1201),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 203/413 (50%), Positives = 298/413 (73%), Gaps = 5/413 (1%)

Query  22   GNVSAVRGMLIESHGPRSVIGEMCFIKLMRGDMQIAAEVVGLNGTTVQLMAYGETKGIEI  81
            G +  V + L+++  P   +GE+C IK      +  AEVVG+NG+   L ++  T G++ 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK----PGEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  82   GCEVVATGHVLRVAVGNGLLGRVIDAVGKPYDGKGELASGlyypalasppaplERRPVSQ  141
            G +V+A  +  +V+VG++LLGRVID+ G+P DG+ EL+        A PP+++ R+P++Q
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  142  RMVTGVRAIDAMLAVAKGQRLGIFAGSGVGKSTLLSMIARNTKADVNVIALVGERGREVV  201
             ++TG+RAID++ + + GQR+GIF+++GVGKSTLL+M+     AD NV+ L+GERGREV 
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  202  DFIDRDLGEEGLKRSVVVVATSDQPSIARLRAAYTATAVAEYFRDQGKDVMLMFDSVTRF  261
            +FID  L+EE  KR V+VVATSD+P++ R+RA + AT++AE+FRD+GK V+L+ DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  262  AHAQREIGLASGEPPAQRGYPPSVFDLLPKLLERSGTNQTGSITAFYTVLVDGDDMDEPI  321
            A+A REI+LA+GE +    YPP+VF  LP+LLER+G  + GSITAFYTVLV+GDDM+EP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  322  ADKVRGTLDGHIVLNRKLAQAAHFPAIDVLASISRLSKRVSGPATQQAVTTVRRLMASYA  381
            AD VR+ LDGHIVL+R+LA+ +H+PAIDVLA++SR+   V++   +Q  + +RR +A Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  382  ENEDMITVGAYQKGSNAAIDKAIDVHPDIEAFLMQDEYEPAPLESTLEKLGSI  434
            E E +I +G YQ+G ++  DKAID  PDI +FL Q   E    E  +EKL  I
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

228) fliI in NC_014103


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  320 bits (1199),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 202/419 (49%), Positives = 295/419 (71%), Gaps = 5/419 (1%)

Query  11   PRTSSFKRYGKVSRVVGMMIESKGPRTSIGDVCFIHLSEQGDKIRAEVVGFNGEHVVLMP  70
            P   ++ R G++  V + ++++  P   +G++C I     G+ + AEVVG+NG   +L P
Sbjct  14   PPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIK---PGEEL-AEVVGINGSKALLSP  69

Query  71   YTSVRYIGPGCLVETTEKPLQVSVGKELIGQVLDSLGNPLDGSEFSHYLPFVLTDQDPPN  130
            +TS   +  G  V +  +  QV+VG  L+G+V+D++G PLDG E+++ +     D  PP 
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCWKDYDAMPPP  128

Query  131  PLERPPIEQPIEVGVRTIDSLLTVGQGQRIGIFAGSGVGKSTLLGMIARNTKADINVIAL  190
            ++ R PI QP+  G+R+IDS+ T G+GQR+GIF+++GVGKSTLL+M+     AD NV+ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  191  VGERGREVREFIERDLGEEGLKRSVVVVATSDQPALLRMKAAYTATSIAEYFRNEGLSVM  250
            +GERGREVREFI+  L+EE  KR V+VVATSD+PAL R++A + AT+IAE+FR++G  V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  251  MMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFASLPRLLERTGTNQHGSITAFYTVLV  310
            ++ DS+TR A A REI+LA GE + +  Y P+VF++LPRLLERTG  + GSITAFYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  311  DGDDMNEPISDTVRGIIDGHIVLDRELANKGQYPAINVLKSVSRVMNHIVSEQHREAAGK  370
            +GDDMNEP++D VR+++DGHIVL R LA++G+YPAI+VL ++SRV   + S++HR+ A+ 
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  371  LRSLMATYANSEDLINIGAYKRGSSAYIDEAIYYHPVIDAFLKQKTNEHPSFETSVTKL  429
            LR  +A Y + E LI IG Y+RG  +  D AI   P I +FL+Q  +E  + E  + KL
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

229) fliI in NC_017138


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  320 bits (1200),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 205/429 (48%), Positives = 298/429 (70%), Gaps = 7/429 (1%)

Query  1    MKVAQLIYEIPRTSSFKRYGKVSRVVGMMIESKGPRTSIGDVCFIHLSERGDKIRAEVVG  60
            M+  +L Y  P   ++ R G++  V + ++++  P   +G++C I     G+ + AEVVG
Sbjct  6    MQRLRLKY--PPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIK---PGEEL-AEVVG  59

Query  61   FNGEHVVLMPYTSVRYIGPGCLVETTEKPLQVSVGKELIGQVLDSLGNPLDGSELSHYLP  120
            +NG   +L P+TS   +  G  V +  +  QV+VG  L+G+V+D++G PLDG EL++ + 
Sbjct  60   INGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VC  118

Query  121  FVLTDQDPPNPLERPPIEQPIEVGVRTIDSLLTVGQGQRIGIFAGSGVGKSTLLGMIARN  180
                D  PP ++ R PI QP+  G+R+IDS+ T G+GQR+GIF+++GVGKSTLL+M+   
Sbjct  119  WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNA  178

Query  181  TKADINVIALVGERGREVREFIERDLGDEGLKRSVVVVATSDQPALLRMKAAYTATSIAE  240
              AD NV+ L+GERGREVREFI+  L++E  KR V+VVATSD+PAL R++A + AT+IAE
Sbjct  179  PDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE  238

Query  241  FFRDEGLSVMMMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFASLPRLLERTGTNQHG  300
            FFRD+G  V+++ DS+TR A A REI+LA GE + +  Y P+VF++LPRLLERTG  + G
Sbjct  239  FFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKG  298

Query  301  SITAFYTVLVDGDDMNEPISDTVRGIIDGHIVLDRELANKGQYPAINVLKSVSRVMNHIV  360
            SITAFYTVLV+GDDMNEP++D VR+++DGHIVL R LA++G+YPAI+VL ++SRV   + 
Sbjct  299  SITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVT  358

Query  361  NERHKEAAEKLRSLMATYANSEDLINIGAYKRGSSAYIDEAIHYHPVIDEFLKQKTNEHP  420
            ++ H++ A  LR  +A Y + E LI IG Y+RG  +  D AI+  P I  FL+Q  +E  
Sbjct  359  SHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

Query  421  SFETSVTKL  429
            + E  + KL
Sbjct  419  GPELLIEKL  427

230) fliI in NC_011567


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  320 bits (1202),  Expect = 8e-89, Method: Compositional matrix adjust.
 Identities = 199/423 (48%), Positives = 295/423 (70%), Gaps = 6/423 (1%)

Query  14   DPYKRFGKVTRVIGLMIEAKGPESSIGDVCYIHIGHkkkkkIQAEVVGFRDEYVLLMPYA  73
            D Y R G++  V + +++A  P   +G++C I  G+       AEVVG+ +   LL P++
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSPFT  71

Query  74   TVQDIAPGCIVEATGGPLEMKVGSALVGRVIDALGAPLDDQPFPKGLTAVPIDRQPPNPM  133
            +  ++  G  V A     ++ VG AL+GRVID++G PLD++ +P  +     D  PP +M
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPAM  130

Query  134  TRPPISEPIEVGVKMIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTNADLNVIALIG  193
             R PI++P+  G++ IDS+ T G GQRVGIF+++GVGKSTL++M+    +AD NV+ LIG
Sbjct  131  VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG  190

Query  194  ERGREVREFIERDLGPEGLKRSIVIVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMFM  253
            ERGREVREFI+  L+ E  KR +++VATSD+PAL R+++ + AT+IAE+FRD+G  V+++
Sbjct  191  ERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLL  250

Query  254  MDSVTRVAMAQREVGLAVGEPPTTKGYTPSVFAILPKLLERTGTNEHGTITAFYTVLVDG  313
             DS+TR A A RE++LA GE + +  Y P+VF+ LP+LLERTG  E G+ITAFYTVLV+G
Sbjct  251  ADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEG  310

Query  314  DDMNEPIADTVRGILDGHFVLERQLANKGQYPAINVLKSVSRVMNYIVTPEHRKVAEKLR  373
            DDMNEP+AD VR++LDGH+VL R+LA++G+YPAI+VL ++SRV   + + EHR++A  LR
Sbjct  311  DDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILR  370

Query  374  ELLATYVQSEDLIQIGAYKRGSSREIDEAIRYYPKIISFLKQDVHECYTINESVQQLFQL  433
              LA Y + E LI+IG Y+RG   + D AI  YP I +FL+Q  +E    +  +++L Q+
Sbjct  371  RRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

Query  434  IEQ  436
            + +
Sbjct  431  LTE  433

231) Selin_2210 in NC_014836


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  320 bits (1201),  Expect = 9e-89, Method: Compositional matrix adjust.
 Identities = 203/402 (51%), Positives = 293/402 (73%), Gaps = 9/402 (2%)

Query  22   GKVTKIIGLLIESRGPASSIGDLCLIHPINPREPLVTAEVVGFRDDVILLMPLGDLAGIG  81
            G++  + + L++++ P+  +G+LC    I+P E L  AEVVG+ +   LL P+   AG+ 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELC---CIKPGEEL--AEVVGINGSKALLSPFTSTAGLH  77

Query  82   PGSRVEAMKEVFMVPVGDALVGRVLNGLGMPIDEQPEPE-CKRLYPVQAAPPNPFTRKRI  140
             G +V A++    VPVG+AL+GRV++G+G P+D +  PE C + Y  +A PP +  R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPI  135

Query  141  DTPIGTGVRAIDGLLTWGKGQRVGIFAGSGVGKSTLLGMIAKNSQADINVIALIGERGRE  200
              P+ TG+RAID++ T G GQRVGIF+++GVGKSTLL+M+ + ++AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VREFIERDLGPDGLARSVIVVATSDQPALVRRQGAYVATAIAEYFRDQGKNVMFMMDSIT  260
            VREFI+  L+ +   R VIVVATSD+PAL R ++ +VAT+IAE+FRD+GK V+++ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RFCMAQREIGLAVGEPPTTKGYTPSVFALLPKLMERTGTGTGEGSISALYTVLVDGDDIT  320
            R+  A REI+LA GE + +  Y P+VF+ LP+L+ERTG G   GSI+A+YTVLV+GDD+ 
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG-EKGSITAFYTVLVEGDDMN  314

Query  321  EPVADASRSILDGHIMLSRKLASRNHFPAIDVLGSASRVFGEITSGEHQELAAKLRNLMA  380
            EP+AD  RS+LDGHI+LSR+LA R H+PAIDVL++ SRVF  +TS EH++LAA LR  +A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  VYGDAEDLINIGAYSKGTNKEIDRAVSRMGAINSFLRQAVNE  422
            +Y + E LI IG Y +G + + D+A+     I +FLRQ+ +E
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

232) Bsel_1744 in NC_014219


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  320 bits (1201),  Expect = 9e-89, Method: Compositional matrix adjust.
 Identities = 192/412 (47%), Positives = 291/412 (71%), Gaps = 7/412 (1%)

Query  19   YGKVSQVVGLMIESRGPQASVGELCLIHISRTQRKILAEVVGFREEKVLLMPFDRISDIA  78
             G++ +V + +++++ P   +GELC I  +      LAEVVG+   K LL PF   +++ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  79   AGSLVETMGRPLEVKVGRDMIGTVVDGLGRHFLDGGERIGNQYYST-DNEPPNPMTRPRI  137
             G  V ++ R  +V VG  ++G V+DG+GR  LDG E + +      D  PP +M R  I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRP-LDGRE-LPEVCWKDYDAMPPPAMVRQPI  135

Query  138  SEPLGLGVKAIDGLFTVGKGQRMGIFAGSGVGKSTLMAMITKSSEADINVIALIGERGRE  197
            ++PL  G++AID++ T G GQR+GIF+++GVGKSTL+AM+ ++++AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  198  VRDFIERDLGEEGMKNTIVVVATSDQPPLMRIKGAMTATAISEYFRDLGYDVNLMMDSVT  257
            VR+FI+  L+EE  K  ++VVATSD+P+L R+++   AT+I+E+FRD G  V L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  258  RVAMAQREIGLAIGEPPTTKGYTPSVFALLPRLLERSGMSQSGSITAFYTVLVDGDDMNE  317
            R A A REI+LA GE + +  Y P+VF+ LPRLLER+GM++ GSITAFYTVLV+GDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  318  PVADSVRGILDGHLVLDRKLANKGHFPAINPLSSISRIMNELVDDRHRQAADKVRQIIST  377
            P+AD VR++LDGH+VL R+LA++GH+PAI+ L+++SR+   +  + HRQ A  +R+ ++ 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  378  YQESEDLINIGAYKKGSNPEVDEAIKRFPEVNEFLVQEVHEAFSYDEIMNQL  429
            YQE E LI IG Y++G + + D AI  +P++  FL Q  +E  + + ++++L
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

233) Spiaf_2102 in NC_017098


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  319 bits (1198),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 191/398 (48%), Positives = 293/398 (74%), Gaps = 7/398 (1%)

Query  20   SGEVVSIKGLLIESHGPQAVLGEVCTIEIPRTGKTVYAEVIGIQDTIIQLMPYQEPEGIE  79
             G +  + + L+++  P   +GE+C I   + G  + AEV+GI+++   L P+    G++
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKALLSPFTSTAGLH  77

Query  80   LGCRVVATGQPLQAPVSLNMLGRVIDAMGRPVDGKGPLQIDGTYPVFNT-PPEALQRSMI  138
             G +V+A  +  Q PV+  +LGRVID+ GRP+DG+   ++      +++ PP A+ R  I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV--CWKDYDAMPPPAMVRQPI  135

Query  139  SEQLQTGVRVIDGLSAVGKGQRLGIFAGSGVGKSTIISMVARNTNADINVIALIGERGRE  198
            ++ L TG+R ID++++ G GQR+GIF+++GVGKST+++M+    +AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  199  VREFIENDLGEEGLARSIVVVSTSDTPALARLRGGYVATAIAEYFRDQGNDVLLLFDSVT  258
            VREFI+  L+EE   R ++VV+TSD PAL R+R+ +VAT+IAE+FRD+G+ V+LL DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  259  RFAMAQREIGLTRGEAPASRGFTPSMFAELPRLLERTGTSDRGSITGFYSILVEGDDMNE  318
            R+A A REI+L+ GE++ S  + P++F+ LPRLLERTG +++GSIT+FY++LVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  319  PVSDTVRGILDGHIVLSRSLAEKYHYPAVDALASLSRLANKVTTAQMQKAAGQIRRLLAV  378
            P++D VR++LDGHIVLSR LAE+ HYPA+D LA+LSR+   VT+ + ++ A+ +RR LA+
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  379  YRDAEDLIHVGAYHHGSNPDIDAAIELLPKINAFLRQG  416
            Y++ E LI++G Y++G + D D AI+  P I +FLRQ+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

234) fliI in NC_005363


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  319 bits (1198),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 187/419 (45%), Positives = 288/419 (69%), Gaps = 8/419 (1%)

Query  24   SGKVTEVNGMLIKGYLPGASVGSIVSINPSGMEKSFLAEVVGFKDKHVLMMALNDMRGVA  83
             G++ +V++ L+++ LPG  +G +  I+P+      LAEVVG+++   L+ ++    G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  84   LGSKIVLARQIATVRAGEELLGRVVDGLGRPLDDKGEVENFREVPLYSEVRNP-LDRRPI  142
             G +++  R+   V  GE LLGRV+DG+GRPLD++   E  +    Y  +  P + R+PI
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD--YDAMPPPAMVRQPI  135

Query  143  REPIDLGIRAINGALTAGLGQRVAIMAGSGVGKSVLLGMMARNTNADVNVIAMIGERGRE  202
             +P+  GIRAI++  T G GQRV+I +++GVGKS LL+M+    +AD NV+ +IGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VREFIEHDLGPEGMKRSVVVCVTSDQSPLLRMRGAYVATALAEYFSSQGKNVLLMMDSVT  262
            VREFI+  L+ E  KR V+V  TSD+++L R+R+ +VAT++AE+F  +GK V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFAMAQREIGLSTGEPPSQKGYTPSVFATLPKLLERAGSFEGEGSITGFYTTLVEGDDMN  322
            R+A A REI+L++GE +    Y P+VF++LP+LLER+G     GSIT+FYT LVEGDDMN
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  323  DPIGDSVRSIVDGHIVLSRSLAQKGHFPAIDIMQSASRVMRAVSSPEHSKLAQKLRETLA  382
            +P++D VRS++DGHIVLSR LA++GH+PAID++ + SRV   V+S EH +LA  LR  LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  383  VYKDAEDLINIGAYKPGSNPKIDRAVKVIDQVNDFLKQRVEDPTNFTQTVRQMQQILIN  441
            +Y++ E LI IG Y+ G +   D+A+    ++  FL+Q  ++       + +++QIL +
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

235) fliI in NC_019567


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  319 bits (1197),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 189/421 (45%), Positives = 290/421 (69%), Gaps = 12/421 (2%)

Query  24   SGKVTEVNGMLIKGYLPGASVGSIVSINPSGMEKSFLAEVVGFKDKHVLMMALNDMRGVA  83
             G++ +V++ L+++ LPG  +G +  I+P+      LAEVVG+++   L+ ++    G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  84   LGSKIVLARQIATVRAGEELLGRVVDGLGRPLDA--LGEVENFREVPLYSEVRNP-LDRR  140
             G +++  R+   V  GE LLGRV+DG+GRPLD+  L EV   ++   Y  +  P + R+
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV-CWKD---YDAMPPPAMVRQ  133

Query  141  PIREPIDLGIRAINGALTAGLGQRVAIMAGSGVGKSVLLGMMARNTNADVNVIAMIGERG  200
            PI +P+  GIRAI++  T G GQRV+I +++GVGKS LL+M+    +AD NV+ +IGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  201  REVREFIEHDLGPEGMKRSVVVCVTSDQSPLLRMRGAYVATALAEYFSSQGKNVLLMMDS  260
            REVREFI+  L+ E  KR V+V  TSD+++L R+R+ +VAT++AE+F  +GK V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  261  VTRFAMAQREIGLSTGEPPSQKGYTPSVFATLPKLLERAGSFEGEGSITGFYTTLVEGDD  320
            +TR+A A REI+L++GE +    Y P+VF++LP+LLER+G     GSIT+FYT LVEGDD
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDD  312

Query  321  MNDPIGDSVRSIVDGHIVLSRSLAQKGHFPAIDIMQSASRVMRAVSSPEHSKLAQKLRET  380
            MN+P++D VRS++DGHIVLSR LA++GH+PAID++ + SRV   V+S EH +LA  LR  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  381  LAVYKDAEDLINIGAYKPGSNPKIDRAVKVIDQVNDFLKQRVEDPTNFTQTVRQMQQILI  440
            LA+Y++ E LI IG Y+ G +   D+A+    ++  FL+Q  ++       + +++QIL 
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

Query  441  N  441
            +
Sbjct  433  E  433

236) Tnap_0848 in NC_013642


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  319 bits (1195),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 193/394 (49%), Positives = 283/394 (72%), Gaps = 3/394 (0%)

Query  22   GRVTRVVGLTVESKGPDAFLGEMCKISLQNGKNALAEVVGFREESVILMPYEDVSGLKMG  81
            GR+  V +  +++  P+ F+GE+C I   +  + LAEVVG+     +L P+   +GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   CEVIRTNKVLEVGVSRKMIGRVFDGLGRPIDGKPFVPEDRYPLTNNPPNPLKRRRIKDPL  141
             +V+   +  +V V+  ++GRV+DG+GRP+DG+ +    +      PP ++ R+ I +PL
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPL  139

Query  142  PVGIRSIDGLITVGKGQRIGIFAGSGVGKSTLLGMIARNTTADVNVLALIGERGREVREF  201
              GIR+ID++ T G GQR+GIF+++GVGKSTLL+M+     AD NVL LIGERGREVREF
Sbjct  140  MTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREF  199

Query  202  IERDLGEEGLKRSILVVSTSDQPALARVKSLLTATSIAEFFRDLGYDVLLMVDSLTRWAM  261
            I+  L+EE  KR ++VV+TSD+PAL RV++L+ AT+IAEFFRD G  V+L+ DSLTR A 
Sbjct  200  IDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYAR  259

Query  262  AQREVGLAVGEPPTTRGYPPSVFAGLPKILERAGNSDKGSITAIYTVLVEADDFNEPISD  321
            A RE++LA GE + +  YPP+VF++LP++LER+G ++KGSITA+YTVLVE+DD NEP++D
Sbjct  260  AAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLAD  319

Query  322  TVRSIVDGHIILSRRLAESNHYPAVDVLASVSRLMNDIVTEEHREAANRLRSLMSAYESA  381
             VRS++DGHI+LSRRLAE  HYPA+DVLA++SR+   + ++EHR+ A  LR  ++ Y+  
Sbjct  320  EVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEV  379

Query  382  KDLIEIGAYKSGTNPLVDKAVEMKDEIDSFLKQG  415
              LI IG Y+ G +   DKA++   +I +FL+Q+
Sbjct  380  ELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

237) fliI in NC_009328


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  318 bits (1194),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 204/420 (49%), Positives = 289/420 (69%), Gaps = 7/420 (1%)

Query  2    YKRFGKVSRVIGLMTESKGPESSIGDLCYIHETSGGRKIPAEVVGFHEQHVLLMPFSSMA  61
            Y R G++  V + + ++  P   +G+LC I          AEVVG++    LL PF+S A
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTA  74

Query  62   HIAPGCLVEATGKPLEVYVGDALIGTVLDPIGRPLDGSALP-LGLKPVSVERDPPNPLAR  120
             +  G  V A  +  +V VG+AL+G V+D +GRPLDG  LP +  K    +  PP ++ R
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK--DYDAMPPPAMVR  132

Query  121  PPIAEPLEVGVRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARRTSADVNVIALIGER  180
             PI++PL  G+R IDS+ + G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  181  GREVREFLERDLGPEGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMD  240
            GREVREF++  L+ E   R V+VVATSD+PAL RV++ + AT+IAE+FRD+G  V+L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  241  SVTRVAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDD  300
            S+TR A A REI+LA GE + +  Y P+VF+ LP+LLER+G    G+ITAFYTVLV+GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  301  MNEPIADAVRGILDGHFVLERQLANKGQYPAINVLKSVSRVMPHIISAEHREAANRVRRL  360
            MNEP+AD VR++LDGH+VL R+LA++G+YPAI+VL ++SRV P + S EHR+ A  +RR 
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  361  LSTYIDSEDLIQIGAYKHGSSREIDEAIQFYPQIMAFCRQEIDEKTTRAESIDALFRLVS  420
            L+ Y + E LI+IG Y++G   + D AI+ YP+I +F RQ  DE       I+ L ++++
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

238) Tpet_0706 in NC_009486


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  318 bits (1194),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 192/403 (48%), Positives = 288/403 (72%), Gaps = 4/403 (0%)

Query  2    SEEDFNKFNGRVTRVVGLTVESKGPDAFLGEMCKISLQNGKNALAEVVGFREESVILMPY  61
            + +++ +  GR+  V +  +++  P+ F+GE+C I   +  + LAEVVG+     +L P+
Sbjct  15   PPDGYCRW-GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPF  70

Query  62   EDVSGLKMSCEVIRTNKVLEVGVSRKMIGRVFDGLGRPIDGKPFVPEDRYPLTNNPPNPL  121
               +GL  + +V+   +  +V V+  ++GRV+DG+GRP+DG+ +    +      PP ++
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAM  130

Query  122  KRRRIKDPLPVGIRSIDGLITVGKGQRIGIFAGSGVGKSTLLGMIARNTTADVNVLALIG  181
             R+ I +PL  GIR+ID++ T G GQR+GIF+++GVGKSTLL+M+     AD NVL LIG
Sbjct  131  VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG  190

Query  182  ERGREVREFIERDLGEEGLKRSILVVSTSDQPALARVKSLLTATSIAEFFRDLGYDVLLM  241
            ERGREVREFI+  L+EE  KR ++VV+TSD+PAL RV++L+ AT+IAEFFRD G  V+L+
Sbjct  191  ERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLL  250

Query  242  VDSLTRWAMAQREVGLAVGEPPTTRGYPPSVFAGLPKILERAGNSDKGSITAIYTVLVEA  301
             DSLTR A A RE++LA GE + +  YPP+VF++LP++LER+G ++KGSITA+YTVLVE+
Sbjct  251  ADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEG  310

Query  302  DDFNEPISDTVRSIVDGHIILSRRLAESNHYPAVDVLASVSRLMNDIVTEEHREAANRLR  361
            DD NEP++D VRS++DGHI+LSRRLAE  HYPA+DVLA++SR+   + ++EHR+ A  LR
Sbjct  311  DDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILR  370

Query  362  SLMSAYESAKDLIEIGAYKSGTNPLVDKAVEMKDEIDSFLKQG  404
              ++ Y+    LI IG Y+ G +   DKA++   +I +FL+Q+
Sbjct  371  RRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

239) Fnod_0758 in NC_009718


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  318 bits (1194),  Expect = 4e-88, Method: Compositional matrix adjust.
 Identities = 198/399 (50%), Positives = 287/399 (72%), Gaps = 8/399 (2%)

Query  30   GEVQKIIGLTIESRGPDAALGELCKILVGNKKALAEVVGFKEDLTILMPLEDVTGLKKGC  89
            G +Q + +  ++++ P+  +GELC I  G+   LAEVVG++   ++L P+   +GL  G 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGE--ELAEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  90   EVLKTGRTVSVPVGEELKGRVIDALGRPIDGKRL---VLKEYRQIVSEAPNPLIRKRILE  146
            +V+   R   VPVGE L GRVID++GRP+DG+ L     K+Y  +   +P +++R+ I +
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQ  137

Query  147  PLPVGVRAIDGFLTLGKGQRIGIFAGSGVGKSTLLGMIARNTTADINVIALIGERGREVR  206
            PL  G+RAID+  T G GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGERGREVR
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  207  EFIEKDLGEEGIKRSVVVVSTSDQPALLRIKALLTATTIAEYFRDKGYAVMLMVDSLTRW  266
            EFI+  L+EE  KR V+VV+TSD+PAL R++AL+ ATTIAE+FRD+G  V+L+ DSLTR 
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  267  AMAQREVGLAIGEPPTTRGYPPSVFAQLPKILERAGNSDKGSITGIYTVLVEADDFNEPI  326
            A A RE++LA GE + +  YPP+VF+ LP++LER+G ++KGSIT++YTVLVE+DD NEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  327  SDTVRGIVDGHIILSRKLAESNHFPAIDVLMSISRLMVDITKPEHIQSARAIRDIIATYN  386
            +D VR+++DGHI+LSR+LAE  H+PAIDVL ++SR+   +T  EH Q A  +R  +A Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  387  DAKDLIDVGAYKKGANPKIDKSIELIDEINKFLRQGIKE  425
            +   LI +G Y++G +   DK+I+   +I  FLRQ+  E
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

240) fliI in NC_015634


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  318 bits (1192),  Expect = 5e-88, Method: Compositional matrix adjust.
 Identities = 190/419 (46%), Positives = 290/419 (70%), Gaps = 8/419 (1%)

Query  7    LDYIPEIGTFKHYGKVKRVIGLMIESLGPESSIGDVCYIHVDNKKNTKKIIAEVVGFRDG  66
            L Y P  G + + G+++ V + ++++  P   +G++C I  ++       +AEVVG+ ++
Sbjct  11   LKYPPPDG-YCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE------LAEVVGINGS  63

Query  67   NVILMPYTNIQEISPGSLVEATGKPMRVKAGPRLLGKVIDPLGVPLDHSPLPAGLKPIPI  126
            + +L P+T+   +  G  V A  +  +V  G  LLG+VID +G PLD   LP  +     
Sbjct  64   KALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCWKDY  122

Query  127  DRTPPNPLKRPPIREPIELGVRAIDSLLTVGKGQRIGIFAGSGVGKSTLLGMIARNTNAD  186
            D  PP ++ R PI +P+  G+RAIDS+ T G GQR+GIF+++GVGKSTLL+M+    +AD
Sbjct  123  DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD  182

Query  187  LNVIALIGERGREVREFIEHDLGPEGLKKSIVVVATSDQPALMRIKGAYTATAIAEYFRD  246
             NV+ LIGERGREVREFI+  L+ E  K+ ++VVATSD+PAL R+++ + AT+IAE+FRD
Sbjct  183  SNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRD  242

Query  247  RGLNVMFMMDSVTRVAMAQREVGLATGEPPATKGYTPSVFAILPKLLERTGTNESGTITG  306
             G  V+++ DS+TR A A RE++LA+GE + +  Y P+VF+ LP+LLERTG  E G+IT+
Sbjct  243  NGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITA  302

Query  307  IYTVLVDGDDLNEPIADTVRGILDGHFVLDRDLANKGQYPAINILKSVSRLMSQLASPAH  366
            +YTVLV+GDD+NEP+AD VR++LDGH+VL R LA++G+YPAI++L ++SR+ + ++S  H
Sbjct  303  FYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEH  362

Query  367  KKAAEKIREQLSTYLNSEDLINIGAYKPGASKEIDEAIERYPKIVSFIKQSTDETYSME  425
            ++ A  +R +L+ Y + E LI IG Y+ G   + D AI+ YP I +F++QS DE  + E
Sbjct  363  RQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

241) fliI in NC_020134


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  317 bits (1187),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 195/399 (49%), Positives = 288/399 (73%), Gaps = 5/399 (1%)

Query  46   GQVTKVVGLTIESKGPESRVGELCRIVNPRTKLEVLAEVVGFRDNHVLLMPLGEMTGIGP  105
            G++  V +  +++  P   +GELC I       E LAEVVG+ ++  LL P+   +G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPG----EELAEVVGINGSKALLSPFTSTAGLHC  78

Query  106  GSEVIATGTELKVRVGHGLLGRVLDGLGNPIDGKGNIPAEGFYPVDNIPPHPLTRPRIKE  165
            G +V+A     +V VG++LLGRV+DG+G P+DG+ ++P       D +PP ++ R  I +
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  166  VLPLGVKCIDSMLTLGKGQRMGIFAGSGVGKSTLIGMIARNTKADIIVIGLIGERGREVR  225
             L  G++ IDS+ T G GQR+GIF+++GVGKSTL++M+     AD  V+ LIGERGREVR
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  226  DFLERDLTEEGLKRSVVVVATSDQPALIRKKGAMVATAIAEYFRDCGYDVLLLMDSLTRF  285
            +F++  L+EE  KR V+VVATSD+PAL R ++  VAT+IAE+FRD G  V+LL DSLTR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  286  SMAQREIGLAIGEPPVSRGYTPSVFSVMPKLLERSGTSDKGSITGLYTVLVDGDDMTEPV  345
            + A REI+LA GE +VS  Y P+VFS +P+LLER+G ++KGSIT++YTVLV+GDDM EP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  346  TDTARSILDGHVVLSRQLAHKNHYPAIDVLGSISRVMSDIVTDEHKKIAGEIRKNLAVYR  405
            +D  RS+LDGH+VLSR+LA++ HYPAIDVL+++SRV + + ++EH+++A+ +R+ LA+Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  406  EAEDLINVGAYVKGSNPEIDRAISVIGNINAFLTQSVNE  444
            E E LI +G Y +G + + D+AI    +I +FL QS +E
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

242) Pjdr2_3454 in NC_012914


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  317 bits (1188),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 192/400 (48%), Positives = 285/400 (72%), Gaps = 7/400 (1%)

Query  25   GKVTQVIGLTVESEGPDASIGDVCLIYPAKGAKPIKAEVVGFRDNKVILMPLGELHAISP  84
            G++ +V +  +++  P+  +G++C I P+       AEVVG+ ++K +L P+    ++  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL----AEVVGINGSKALLSPFTSTAGLHC  78

Query  85   GCDVVGTGKPLSVQVGSELLGKVLDGLGKPLDGSFLPS-RMQQYSTHNEPSNPLARPRVQ  143
            G +V++  +   V VG  LLG+V+DG+G+PLDG  LP    ++Y +   P+ ++ R  + 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPIT  136

Query  144  ETLSIGVRAIDGLLTVGRGQRVGIFAGSGVGKSTLLGMIARNTSADVNVIALIGERGREV  203
            + L  G+RAID++ T G GQRVGIF+++GVGKSTLL+M+     AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  204  LEFIEKDLGPEGLARSVVIVATSDQPALIRIKGALIATSIAEYFRDRGLNVMLMMDSVTR  263
             EFI+  L+ E   R V++VATSD+PAL R+++ ++AT+IAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  264  YAMAQREVGLAIGEPPATRGYTPSVFATLPKLLERAGTGPNGSITAFYTVLVDGDDMNEP  323
            YA A RE++LA GE + +  Y P+VF++LP+LLER+G G +GSITAFYTVLV+GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  324  IADAVRGILDGHIVLNRQLANKGHFPAIDVLASVSRVMKEIVTEEHQEAANELKMLLSVY  383
            +AD VR++LDGHIVL+R+LA++GH+PAIDVLA++SRV   + ++EH++ A  L+  L++Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  384  RDSEDLINIGAYQRGTNEKIDTAIENIDAIYQFTRQKTNE  423
            ++ E LI IG YQRG +   D AI+    I  F RQ  +E
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

243) fliI in NC_017068


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  317 bits (1187),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 189/395 (48%), Positives = 284/395 (72%), Gaps = 8/395 (2%)

Query  31   GKVTQVIGLVIESQGPTVSVGELCYISSHNPNVPPIPAEVVGFREGYVMLMPVGEMQGIG  90
            G++ +V + ++++  P V +GELC I + +       AEVVG+  +  +L P     G+ 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSPFTSTAGLH  77

Query  91   PGCEVTAAQKMLNVRVGEELLGRVLDGLGNPIDGKG-PILCKQEYSLQADPPHPLSRPRI  149
             G +V A ++  +V VGE LLGRV+DG+G P+DG+  P +C ++Y  +A PP ++ R  I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPI  135

Query  150  HDSLYVGVRAIDGLITMGEGQRIGIMAGSGVGKSTLLSMIARNTEADISVIALVGERGRE  209
             ++L  G+RAID++ T GEGQR+GI +++GVGKSTLL+M+    +AD +V+ L+GERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  210  VRDFIERDLGEEGMKRSVVVVATSDQPALVRIKGAMTATAIAEYFRDKGRKVILMMDSVT  269
            VR+FI+  L+EE  KR V+VVATSD+PAL R+++   AT+IAE+FRD+G++V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  270  RFAMAQREVGLTIGEPPATRGYTPSVFAMLPRLLERAGTSATGSITGIYTVLVDGDDMNE  329
            R+A A RE++L+ GE + +  Y P+VF+ LPRLLER+G +  GSIT++YTVLV+GDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  330  PIADAVRSILDGHIVLSRNIAAQNHFPAIDIMPSVSRVMNEVVSPEHLKAAQQMRQLMAV  389
            P+AD VRS+LDGHIVLSR +A + H+PAID+++++SRV   V S EH + A  +R+ +A+
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  390  YRDAEDLIHIGAYVKGSSAKIDESIQKIDAINEFL  424
            Y++ E LI+IG Y +G  +  D +I+    I  FL
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

244) Clo1100_2408 in NC_016791


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  317 bits (1190),  Expect = 7e-88, Method: Compositional matrix adjust.
 Identities = 196/400 (49%), Positives = 287/400 (72%), Gaps = 8/400 (2%)

Query  23   GKVSKVVGLTIESDGPQVSIGNLCNIHIPGGNKLKAEVVGFKDEKVLLMPLGEMLGIGPG  82
            G++  V +  +++  P V +G+LC I    G+ L AEVVG+++ K LL P+    G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK--PGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  83   STVSANGDTLKVAVGPELIGRVLDGLGNPIDDKG--SLQSKHFYKTDNKPPNPLTRKRIS  140
              V A     +V+VG  L+GRV+DG+G P+D++    +  K++   D  PP ++ R+ I+
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY---DAMPPPAMVRQPIT  136

Query  141  EPLPLGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMVARNTKADINVIALIGERGREV  200
            +PL  G+RAID++ T G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  201  REFLERDLTDEGLARSVVVVATSDQPALIRLKGAMVATAIAEYFRDCGKDVLLLMDSLTR  260
            REF++  L++E   R V+VVATSD+PAL R+++  VAT+IAE+FRD GK V+LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  261  YAMAQREVGLSIGEPPVSRGYTPSVFSVFPKLLERAGTSEKGSITGLYTVLVDGDDLTEP  320
            YA A RE++L+ GE +VS  Y P+VFS +P+LLER+G +EKGSIT++YTVLV+GDD+ EP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  321  VTDTARGILDGHIVLSRAMANKNHYPAIDVLASVSRVMGDIINKEHKKSANEIKKIMAVH  380
            ++D  R++LDGHIVLSR +A++ HYPAIDVLA++SRV   + + EH++ A  +++ +A+ 
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  381  RDAEDLINIGAYVKGSNEKIDYAIESIDDITSFLQQETDE  420
            ++ E LI IG Y +G +   D AI++  DI +FL+Q  DE
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

245) Bcoa_0054 in NC_016023


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  317 bits (1190),  Expect = 7e-88, Method: Compositional matrix adjust.
 Identities = 190/419 (46%), Positives = 291/419 (70%), Gaps = 8/419 (1%)

Query  7    LDYIPEIGTFKHYGKVKRVIGLMIESLGPESSIGDVCYIHVDNKKNTKKIIAEVVGFRDG  66
            L Y P  G + + G+++ V + ++++  P   +G++C I  ++       +AEVVG+ ++
Sbjct  11   LKYPPPDG-YCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE------LAEVVGINGS  63

Query  67   NVILMPYTNIQEISPGSLVEATGKPMRVKAGPRLLGKVIDPLGVPLDHSPLPAGLKPIPI  126
            + +L P+T+   +  G  V A  +  +V  G  LLG+VID +G PLD   LP  +     
Sbjct  64   KALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCWKDY  122

Query  127  DRTPPNPLKRPPIREPIELGVRAIDSLLTVGKGQRIGIFAGSGVGKSTLLGMIARNTNAD  186
            D  PP ++ R PI +P+  G+RAIDS+ T G GQR+GIF+++GVGKSTLL+M+    +AD
Sbjct  123  DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD  182

Query  187  LNVIALIGERGREVREFIEQDLGPEGLKKSIVVVATSDQPALMRIKGAYTATAIAEYFRD  246
             NV+ LIGERGREVREFI+  L+ E  K+ ++VVATSD+PAL R+++ + AT+IAE+FRD
Sbjct  183  SNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRD  242

Query  247  QGLNVMFMMDSVTRVAMAQREVGLATGEPPATKGYTPSVFAILPKLLERTGTNESGTITG  306
            +G  V+++ DS+TR A A RE++LA+GE + +  Y P+VF+ LP+LLERTG  E G+IT+
Sbjct  243  NGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITA  302

Query  307  IYTVLVDGDDLNEPIADTVRGILDGHFVLDRDLANKGQYPAINILKSVSRLMSQLASPAH  366
            +YTVLV+GDD+NEP+AD VR++LDGH+VL R LA++G+YPAI++L ++SR+ + ++S  H
Sbjct  303  FYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEH  362

Query  367  KKAAEKIREQLSTYLNSEDLINIGAYKPGASKEIDEAIERYPKIVSFIKQSTDETYSME  425
            ++ A  +R +L+ Y + E LI IG Y+ G   + D AI+ YP I +F++QS DE  + E
Sbjct  363  RQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

246) TRQ2_0730 in NC_010483


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  317 bits (1189),  Expect = 8e-88, Method: Compositional matrix adjust.
 Identities = 193/394 (49%), Positives = 282/394 (72%), Gaps = 3/394 (0%)

Query  22   GRVTRVVGLTVESKGPDAFLGEMCKISLQNGKNALAEVVGFREESVILMPYEDVSGLKMG  81
            GR+  V +  +++  P+ F+GE+C I   +  + LAEVVG+     +L P+   +GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   CEVIRTNKVLEVGVSRKMIGRVFDGLGRPIDGKPFVPEDRYPLTNTPPNPLKRRRIKDPL  141
             +V+   +  +V V+  ++GRV+DG+GRP+DG+ +    +      PP ++ R+ I +PL
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPL  139

Query  142  PVGIRSIDGFITVGKGQRIGIFAGSGVGKSTLLGMIARNTTADINVLALIGERGREVREF  201
              GIR+ID+  T G GQR+GIF+++GVGKSTLL+M+     AD NVL LIGERGREVREF
Sbjct  140  MTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREF  199

Query  202  IERDLGEEGLKRSILVVSTSDQPALARVKSLLTATSIAEFFRDLGYDVLLMVDSLTRWAM  261
            I+  L+EE  KR ++VV+TSD+PAL RV++L+ AT+IAEFFRD G  V+L+ DSLTR A 
Sbjct  200  IDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYAR  259

Query  262  AQREVGLAVGEPPTTRGYPPSVFAGLPKILERAGNSDKGSITAIYTVLVEADDFNEPISD  321
            A RE++LA GE + +  YPP+VF++LP++LER+G ++KGSITA+YTVLVE+DD NEP++D
Sbjct  260  AAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLAD  319

Query  322  TVRSIVDGHIILSRRLAESNHYPAVDVLASVSRLMNDIVTEEHREAANRLRSLMSAYESA  381
             VRS++DGHI+LSRRLAE  HYPA+DVLA++SR+   + ++EHR+ A  LR  ++ Y+  
Sbjct  320  EVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEV  379

Query  382  KDLIEIGAYKSGTNPLVDKAVEMKDEIDSFLKQG  415
              LI IG Y+ G +   DKA++   +I +FL+Q+
Sbjct  380  ELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

247) fliI in NC_010520


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  316 bits (1184),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 191/379 (51%), Positives = 279/379 (74%), Gaps = 3/379 (0%)

Query  43   FVGEVCIIYNEKNQTIPCEVVGFKEENVILMPLGELIGIAPGCKVIPQGKPLSVICSENI  102
            F+GE+C I    + +   EVVG++  + +L P+    G+  G +V++  +   V  +E +
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  103  LGKVLDGLGNPLEGEELMEGSPYALDSDPPDPMKRRRIKDVIPTGIKAIDGFITVGEGQR  162
            LG+V+DG+G PL+G EL E      D+ PP +M R+ I + + TGI+AID+  T GEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  163  IGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREVRDFIEKDLGEEGLKKSVIVCA  222
            +GIF+++GVGKST L+M+ + ++AD NV+ LIGERGREVR+FI+  L+EE  K+ VIV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  223  TSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTRFAMAQREIGLAIGEPPATKGY  282
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A REI+LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  283  TPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRSLAA  342
             P+VF+ LPRL+ER+GM++KGSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  343  KNHYPAIDILSSVSRLMSEIASKEHKNAAGMARDLLATYKNSEDLINIGAYVKGSNPKVD  402
            + HYPAID+L+++SR+ + ++S EH++ A++ R  LA Y++ E LI IG Y +G +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  403  MAIHYHESIISFLKQGIGE  421
             AI+    I +FL+Q+ +E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

248) rhcN in NC_004463


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  316 bits (1186),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 200/403 (50%), Positives = 293/403 (73%), Gaps = 6/403 (1%)

Query  37   RGRITRAVGTLLHAVLPEARVGELCLLQDPRSGWSLEAEVIGLLPDGVLLTPIGDMVGLS  96
            +GRI    +TLL+A LP   +GELC +   ++G  L AEV+G+     LL+P+    GL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKALLSPFTSTAGLH  77

Query  97   NRAEVVTTGRMQEVAAGPDLLGRVIDSFGRPLDGKGPIKAGEARPLRGRAPNPMKRRAIE  156
               +V++  R ++V+ G  LLGRVID+FGRPLDG+  +     +   + +P +M R++I 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPIT  136

Query  157  QPFPLGVRVLDGLLTCGEGQRIGIYGDAGCGKSTLMSQIVRGAAADVTIVALIGERGREV  216
            QP+  G+R +D++ TCGEGQR+GI++ +G GKSTL++ +  ++ AD  ++ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  217  REFIERHLGEALH-RSVVVVETSDRSAMERAQCAHMATALAEYFRDQGLRVVLMMDSLTR  275
            REFI+  L+E  + R V+VV TSDR+A+ER +   +AT++AE+FRD+G RVVL+ DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  276  FSRAMREIGLAAGEPPTRRGFPPSVFALLPGLLERAGMGEHGSITAFYTVLVEGDGTGDP  335
            ++RA REI+LAAGE +    +PP+VF+ LP LLER+GMGE GSITAFYTVLVEGD+  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  336  IAEESRGILDGHIILSRALASREHFPAIDVLSSRSRVMDAIVSVPHRKAASFFRDLLSRY  395
            +A+E R++LDGHI+LSR LA R H+PAIDVL++ SRV   + S  HR+ A+++R  L+ Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  396  AEAEFLIKVGEYKQGSDPLTDRAIASIEQLRAFLRQGQGEACS  438
             E E+LI++GEY++G D  TD+AI +  ++ +FLRQ+++E C+
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

249) rhcN in NC_017249


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  316 bits (1186),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 200/403 (50%), Positives = 293/403 (73%), Gaps = 6/403 (1%)

Query  37   RGRITRAVGTLLHAVLPEARVGELCLLQDPRSGWSLEAEVIGLLPDGVLLTPIGDMVGLS  96
            +GRI    +TLL+A LP   +GELC +   ++G  L AEV+G+     LL+P+    GL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKALLSPFTSTAGLH  77

Query  97   NRAEVVTTGRMQEVAAGPDLLGRVIDSFGRPLDGKGPIKAGEARPLRGRAPNPMKRRAIE  156
               +V++  R ++V+ G  LLGRVID+FGRPLDG+  +     +   + +P +M R++I 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPIT  136

Query  157  QPFPLGVRVLDGLLTCGEGQRIGIYGDAGCGKSTLMSQIVRGAAADVTIVALIGERGREV  216
            QP+  G+R +D++ TCGEGQR+GI++ +G GKSTL++ +  ++ AD  ++ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  217  REFIERHLGEALH-RSVVVVETSDRSAMERAQCAHMATALAEYFRDQGLRVVLMMDSLTR  275
            REFI+  L+E  + R V+VV TSDR+A+ER +   +AT++AE+FRD+G RVVL+ DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  276  FSRAMREIGLAAGEPPTRRGFPPSVFALLPGLLERAGMGEHGSITAFYTVLVEGDGTGDP  335
            ++RA REI+LAAGE +    +PP+VF+ LP LLER+GMGE GSITAFYTVLVEGD+  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  336  IAEESRGILDGHIILSRALASREHFPAIDVLSSRSRVMDAIVSVPHRKAASFFRDLLSRY  395
            +A+E R++LDGHI+LSR LA R H+PAIDVL++ SRV   + S  HR+ A+++R  L+ Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  396  AEAEFLIKVGEYKQGSDPLTDRAIASIEQLRAFLRQGQGEACS  438
             E E+LI++GEY++G D  TD+AI +  ++ +FLRQ+++E C+
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

250) Ferpe_0492 in NC_017095


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  316 bits (1185),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 197/399 (50%), Positives = 287/399 (72%), Gaps = 8/399 (2%)

Query  34   GEVQKVIGLTIESKGPDAAYGELCKIIVGNKKALAEVVGFKEDMTVLMPLEDITGLKKGC  93
            G +Q V +  +++  P+   GELC I  G+   LAEVVG++   ++L P+   +GL  G 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGE--ELAEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  94   EVIKTNKTVSIPVGEELRGRVVDALGRPIDGKRL---VLREYRPIINEAPNPLIRKRILE  150
            +V+   +   +PVGE L GRV+D++GRP+DG+ L     ++Y ++   +P +++R+ I +
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQ  137

Query  151  PLPVGVRAIDGFITLGKGQRIGIFAGSGVGKSTLLGMIARNTMADINVIALIGERGREVR  210
            PL  G+RAID+  T G GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGERGREVR
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  211  EFIEKDLGEEGLKRSVVVVSTSDQPALLRIKALLTATTIAEYFRDKGYAVMLMVDSLTRW  270
            EFI+  L+EE  KR V+VV+TSD+PAL R++AL+ ATTIAE+FRD+G  V+L+ DSLTR 
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  271  AMAQREVGLAIGEPPTTRGYPPSVFAQLPKILERAGNSDKGSITGIYTVLVEADDFNEPI  330
            A A RE++LA GE + +  YPP+VF+ LP++LER+G ++KGSIT++YTVLVE+DD NEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  331  SDTVRGIVDGHIILSRRLAESNHYPAIDVLMSVSRLMTDIVKPEHLHAARLLRDIMATYN  390
            +D VR+++DGHI+LSRRLAE  HYPAIDVL ++SR+   +   EH + A +LR  +A Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  391  DAKDLIDVGAYKKGTNPKIDKAIELIDEINKFLRQGIHE  429
            +   LI +G Y++G +   DKAI+   +I  FLRQ+ +E
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

251) mlr6342 in NC_002678


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  316 bits (1184),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 200/403 (50%), Positives = 294/403 (73%), Gaps = 5/403 (1%)

Query  37   RGRITRAVGTLVHAVLPDTRIGELCLLQDPRTGLSLEAEVIGLLDDGVLLTPIGDLVGLS  96
            +GRI    +TL++A LP+  +GELC +   + G  L AEV+G+ +   LL+P+    GL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKALLSPFTSTAGLH  77

Query  97   SRAEVVATGRMREVPVGNDLLGRVIDSRCRPLDGKGQIETTETRPLHGRAPNPMTRRMIE  156
               +V+A  R ++VPVG+ LLGRVID+  RPLDG+ ++     +  ++ +P +M R+ I 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPIT  136

Query  157  RPLPLGVRVLDGLLTCGEGQRIGIYGEPGGGKSTLLSQIVKGAAADVVIVALIGERGREV  216
            +PL  G+R +D++ TCGEGQR+GI++ PG GKSTLL+ + +++ AD  ++ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  217  REFIERHLGEEGLRRAVVVVETSDRSAVQRAQCAPMATALAEYFREQGLRVALMLDSLTR  276
            REFI+  L+EE  +R V+VV TSDR+A++R +   +AT++AE+FR++G RV L+ DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  277  FCRAMREIGLAAGEPPTRRGFPPSVFSMLPGLLERAGMSERGSITAFYTVLVEGDGTGDP  336
            + RA REI+LAAGE +    +PP+VFS LP LLER+GM+E+GSITAFYTVLVEGD+  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  337  IAEESRGILDGHVVLSRAIAARSHFPAIDVLQSRSRVMDAVVSRTHRKAASFFRELLSRH  396
            +A+E R++LDGH+VLSR +A R+H+PAIDVL + SRV   V S+ HR+ A+++R  L+  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  397  AETEFLINVGEYKQGGDPLTDRAVESIDELREFLRQSEDEISG  439
             E E+LI +GEY++G D  TD+A+++  ++  FLRQS DE+ G
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

252) fliI in NC_020887


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  316 bits (1185),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 195/399 (49%), Positives = 288/399 (73%), Gaps = 5/399 (1%)

Query  24   GQVTKVVGLTIESKGPESRVGELCRIVNPRTKLEVLAEVVGFRDNHVLLMPLGEMTGIGP  83
            G++  V +  +++  P   +GELC I       E LAEVVG+ ++  LL P+   +G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPG----EELAEVVGINGSKALLSPFTSTAGLHC  78

Query  84   GSEVIATGTELKVRVGHGLLGRVLDGLGNPIDGKGNIPAEGFYPVDNIPPHPLTRPRIKE  143
            G +V+A     +V VG++LLGRV+DG+G P+DG+ ++P       D +PP ++ R  I +
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  144  VLPLGVKCIDSMLTLGKGQRMGIFAGSGVGKSTLIGMIARNTKADIIVIGLIGERGREVR  203
             L  G++ IDS+ T G GQR+GIF+++GVGKSTL++M+     AD  V+ LIGERGREVR
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  204  DFLERDLTEEGLKRSVVVVATSDQPALIRKKGAMVATAIAEYFRDCGYDVLLLMDSLTRF  263
            +F++  L+EE  KR V+VVATSD+PAL R ++  VAT+IAE+FRD G  V+LL DSLTR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  264  SMAQREIGLAIGEPPVSRGYTPSVFSVMPKLLERSGTSDKGSITGLYTVLVDGDDMTEPV  323
            + A REI+LA GE +VS  Y P+VFS +P+LLER+G ++KGSIT++YTVLV+GDDM EP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  324  TDTARSILDGHVVLSRQLAHKNHYPAIDVLGSISRVMSDIVTDEHKKIAGEIRKNLAVYR  383
            +D  RS+LDGH+VLSR+LA++ HYPAIDVL+++SRV + + ++EH+++A+ +R+ LA+Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  384  EAEDLINVGAYVKGSNPEIDRAISVIGNINAFLTQSVNE  422
            E E LI +G Y +G + + D+AI    +I +FL QS +E
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

253) Tmari_0216 in NC_021214


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  316 bits (1185),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 193/394 (49%), Positives = 282/394 (72%), Gaps = 3/394 (0%)

Query  22   GRVTRVVGLTVESKGPDAFLGEMCKISLQNGKNALAEVVGFREESVILMPYEDVSGLKMG  81
            GR+  V +  +++  P+ F+GE+C I   +  + LAEVVG+     +L P+   +GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   CEVIRTNKVLEVGVSRKMIGRVFDGLGRPIDGKPFVPEDRYPLINNPPNPLKRRRIKDPL  141
             +V+   +  +V V+  ++GRV+DG+GRP+DG+ +    +      PP ++ R+ I +PL
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPL  139

Query  142  PVGIRSIDGFITIGKGQRIGIFAGSGVGKSTLLGMIARNTTADINVLALIGERGREVREF  201
              GIR+ID+  T G GQR+GIF+++GVGKSTLL+M+     AD NVL LIGERGREVREF
Sbjct  140  MTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREF  199

Query  202  IERDLGEEGLKRSILVVSTSDQPALARVKSLLTATSIAEFFRDLGYDVLLMVDSLTRWAM  261
            I+  L+EE  KR ++VV+TSD+PAL RV++L+ AT+IAEFFRD G  V+L+ DSLTR A 
Sbjct  200  IDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYAR  259

Query  262  AQREVGLAVGEPPTTRGYPPSVFAGLPKILERAGNSDKGSITAIYTVLVEADDFNEPISD  321
            A RE++LA GE + +  YPP+VF++LP++LER+G ++KGSITA+YTVLVE+DD NEP++D
Sbjct  260  AAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLAD  319

Query  322  TVRSIVDGHIILSRRLAESNHYPAVDVLASVSRLMNDIVTEEHREAANRLRSLMSAYESA  381
             VRS++DGHI+LSRRLAE  HYPA+DVLA++SR+   + ++EHR+ A  LR  ++ Y+  
Sbjct  320  EVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEV  379

Query  382  KDLIEIGAYKSGTNPLVDKAVEMKDEIDSFLKQG  415
              LI IG Y+ G +   DKA++   +I +FL+Q+
Sbjct  380  ELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

254) TM0218 in NC_000853


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  316 bits (1185),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 193/394 (49%), Positives = 282/394 (72%), Gaps = 3/394 (0%)

Query  22   GRVTRVVGLTVESKGPDAFLGEMCKISLQNGKNALAEVVGFREESVILMPYEDVSGLKMG  81
            GR+  V +  +++  P+ F+GE+C I   +  + LAEVVG+     +L P+   +GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   CEVIRTNKVLEVGVSRKMIGRVFDGLGRPIDGKPFVPEDRYPLINNPPNPLKRRRIKDPL  141
             +V+   +  +V V+  ++GRV+DG+GRP+DG+ +    +      PP ++ R+ I +PL
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPL  139

Query  142  PVGIRSIDGFITIGKGQRIGIFAGSGVGKSTLLGMIARNTTADINVLALIGERGREVREF  201
              GIR+ID+  T G GQR+GIF+++GVGKSTLL+M+     AD NVL LIGERGREVREF
Sbjct  140  MTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREF  199

Query  202  IERDLGEEGLKRSILVVSTSDQPALARVKSLLTATSIAEFFRDLGYDVLLMVDSLTRWAM  261
            I+  L+EE  KR ++VV+TSD+PAL RV++L+ AT+IAEFFRD G  V+L+ DSLTR A 
Sbjct  200  IDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYAR  259

Query  262  AQREVGLAVGEPPTTRGYPPSVFAGLPKILERAGNSDKGSITAIYTVLVEADDFNEPISD  321
            A RE++LA GE + +  YPP+VF++LP++LER+G ++KGSITA+YTVLVE+DD NEP++D
Sbjct  260  AAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLAD  319

Query  322  TVRSIVDGHIILSRRLAESNHYPAVDVLASVSRLMNDIVTEEHREAANRLRSLMSAYESA  381
             VRS++DGHI+LSRRLAE  HYPA+DVLA++SR+   + ++EHR+ A  LR  ++ Y+  
Sbjct  320  EVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEV  379

Query  382  KDLIEIGAYKSGTNPLVDKAVEMKDEIDSFLKQG  415
              LI IG Y+ G +   DKA++   +I +FL+Q+
Sbjct  380  ELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

255) fliI in NC_018866


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  316 bits (1186),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 192/405 (48%), Positives = 288/405 (72%), Gaps = 3/405 (0%)

Query  15   EPISARGLVSKISGLLVEADGPRASVGKYCHIMASNSKAIPAEVAGFRGTKTLLMPLGEL  74
            +    +G +  +S+ L++A  P   +G  C I +++  A   EV G+ G+K+LL P+   
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA---EVVGINGSKALLSPFTST  73

Query  75   EGVAPGDKVIPQDETLNVKVGPELLGRILDGLGQPLDGRPLNTDQSYPLHNKPPSALFRP  134
             G+  G++V++     +V VG  LLGR++DG+G+PLDGR L        +  PP+A+ R 
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQ  133

Query  135  RICEPLNVGVRGIDGLLTMGRGQRMGIFAGSGVGKSTLLGMMARNSEADVNVIALVGERG  194
             I +PL  G+R+ID++ T G GQR+GIF+++GVGKSTLL+M+   ++AD NV+ L+GERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  195  RELRDFMEKDLGEEGLSRSVIVVATSDQPALVRMKAAFTATAVAEYFRDKGKNVLFMMDS  254
            RE+R+F++  L+EE   R VIVVATSD+PAL R++A F AT++AE+FRD+GK V+++ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  255  VTRFAMAQREIGLTVGEPPATRGYPPSVFAMLPKLLERVGLSEKGSITGIYTVLVDGDDH  314
            +TR+A A REI+L+ GE + +  YPP+VF+ LP+LLER G++EKGSIT++YTVLV+GDD 
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  315  NEPIADAVRGILDGHIVLTRELASKNHYPSIDILQSISRLMSDVADPQVRELAGKIREHL  374
            NEP+AD VR++LDGHIVL+R LA + HYP+ID+L ++SR+ + V+  + R+LA+ +R +L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  375  AVYHEAKDLIDIGAYVAGSSSRIDQAIKHHEKIRAFVCQNTDEKC  419
            A+Y+E   LI IG Y  G  +  D+AI     I +F+ Q+ DE C
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

256) fliI in NC_018867


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  316 bits (1186),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 192/405 (48%), Positives = 288/405 (72%), Gaps = 3/405 (0%)

Query  15   EPISARGLVSKISGLLVEADGPRASVGKYCHIMASNSKAIPAEVAGFRGTKTLLMPLGEL  74
            +    +G +  +S+ L++A  P   +G  C I +++  A   EV G+ G+K+LL P+   
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA---EVVGINGSKALLSPFTST  73

Query  75   EGVAPGDKVIPQDETLNVKVGPELLGRILDGLGQPLDGRPLNTDQSYPLHNKPPSALFRP  134
             G+  G++V++     +V VG  LLGR++DG+G+PLDGR L        +  PP+A+ R 
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQ  133

Query  135  RICEPLNVGVRGIDGLLTMGRGQRMGIFAGSGVGKSTLLGMMARNSEADVNVIALVGERG  194
             I +PL  G+R+ID++ T G GQR+GIF+++GVGKSTLL+M+   ++AD NV+ L+GERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  195  RELRDFMEKDLGEEGLSRSVIVVATSDQPALVRMKAAFTATAVAEYFRDKGKNVLFMMDS  254
            RE+R+F++  L+EE   R VIVVATSD+PAL R++A F AT++AE+FRD+GK V+++ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  255  VTRFAMAQREIGLTVGEPPATRGYPPSVFAMLPKLLERVGLSEKGSITGIYTVLVDGDDH  314
            +TR+A A REI+L+ GE + +  YPP+VF+ LP+LLER G++EKGSIT++YTVLV+GDD 
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  315  NEPIADAVRGILDGHIVLTRELASKNHYPSIDILQSISRLMSDVADPQVRELAGKIREHL  374
            NEP+AD VR++LDGHIVL+R LA + HYP+ID+L ++SR+ + V+  + R+LA+ +R +L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  375  AVYHEAKDLIDIGAYVAGSSSRIDQAIKHHEKIRAFVCQNTDEKC  419
            A+Y+E   LI IG Y  G  +  D+AI     I +F+ Q+ DE C
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

257) Geoth_2698 in NC_015660


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  316 bits (1185),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 201/422 (48%), Positives = 288/422 (69%), Gaps = 7/422 (1%)

Query  2    DSYKRFGKVSRVIGLMIEAKGPESSVGDICYIHTGSGKQKQMIAAEVVGFKEQHVLLMPF  61
            D+Y R G++  V + +++A  P   +G++C I  G         AEVVG++    LL PF
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE------LAEVVGINGSKALLSPF  70

Query  62   STVQHISPGCIVEATGKPLQIRVGFPLIGKVLDSLGYPLDGSPLSKGLQPISIERNPPNP  121
            ++   +  G  V A  +  Q+ VG +L+G+V+D++G PLDG  L+  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  122  LARPPISEPIEVGVRVIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARHTNADINVIALI  181
            + R PI++P+  G+R IDS+ T G GQRVGIF+++GVGKSTL++M+    +AD NV+ LI
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  182  GERGREVREFIERDLGPEGLARSIVVVATSDQPALMRVKGAYTATAIAEYFRDQGMDVMF  241
            GERGREVREFI+  L+ E   R ++VVATSD+PAL RV++ + AT+IAE+FRD+G  V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  242  MMDSVTRVAMAQREIGLAIGEPPTTKGYTPSVFAILPKLLERTGTNACGTITAFYTVLVD  301
            + DS+TR A A REI+LA GE + +  Y P+VF+ LP+LLERTG    G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  302  GDDMNEPIADTVRGILDGHLVLERSLANKGQYPAINVLKSVSRVMNHIISPEHRQAADKL  361
            GDDMNEP+AD VR++LDGH+VL R LA++G+YPAI+VL ++SRV   + S EHRQ A  L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  362  RQLLSTYINSEDLINIGAYKRGSSKEIDEAIRYYPEIISFCKQDIDEKATKDESIETLLR  421
            R+ L+ Y + E LI IG Y+RG   + D AI  YP+I +F +Q  DE    +  IE L +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

Query  422  LM  423
            ++
Sbjct  430  IL  431

258) fliI in NC_012793


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  316 bits (1186),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 200/422 (48%), Positives = 288/422 (69%), Gaps = 7/422 (1%)

Query  2    DTYKRFGKVSRVIGLMIEAKGPESSVGDICYIHTRSGRQKQLIAAEVVGFKEQHVLLMPF  61
            D Y R G++  V + +++A  P   +G++C I  ++G +     AEVVG++    LL PF
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEE----LAEVVGINGSKALLSPF  70

Query  62   STVQHISPGCIVEATGKPLQIHVGTPLIGQVLDPLGYPLDGSPLPKGLHPISIERNPPNP  121
            ++   +  G  V A  +  Q+ VG +L+G+V+D +G PLDG  LP  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  122  LARPPINEPIEVGVRIIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARHTNADINVIALI  181
            + R PI +P+  G+R IDS+ T G GQRVGIF+++GVGKSTL++M+    +AD NV+ LI
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  182  GERGREVREFIERDLGPEGLARSIVVVATSDQPALMRVKGAYTATAIAEYFRDQGMDVMF  241
            GERGREVREFI+  L+ E   R ++VVATSD+PAL RV++ + AT+IAE+FRD+G  V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  242  MMDSVTRVAMAQREIGLAIGEPPTTKGYTPSVFAILPKLLERTGTSAYGTITAFYTVLVD  301
            + DS+TR A A REI+LA GE + +  Y P+VF+ LP+LLERTG +  G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  302  GDDMNEPIADTVRGILDGHFILERSLANRGQYPAINVLKSVSRVMNHIITPEHRQAADKL  361
            GDDMNEP+AD VR++LDGH++L R LA+RG+YPAI+VL ++SRV   + + EHRQ A  L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  362  RQLLSTYINSEDLINIGAYKRGSSNEIDEAIRYYPKIISFCKQDIHEKITKDESIEMLID  421
            R+ L+ Y + E LI IG Y+RG   + D AI  YP I +F +Q  +E    +  IE L +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

Query  422  LI  423
            ++
Sbjct  430  IL  431

259) GY4MC1_2685 in NC_014650


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  316 bits (1184),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 201/422 (48%), Positives = 288/422 (69%), Gaps = 7/422 (1%)

Query  2    DSYKRFGKVSRVIGLMIEAKGPESSVGDICYIHTGSGKQKQMIAAEVVGFKEQHVLLMPF  61
            D+Y R G++  V + +++A  P   +G++C I  G         AEVVG++    LL PF
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE------LAEVVGINGSKALLSPF  70

Query  62   STVQHISPGCIVEATGKPLQIRVGFPLIGKVLDSLGYPLDGSPLSKGLQPISIERNPPNP  121
            ++   +  G  V A  +  Q+ VG +L+G+V+D++G PLDG  L+  +     +  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPA  129

Query  122  LARPPISEPIEVGVRVIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARHTNADINVIALI  181
            + R PI++P+  G+R IDS+ T G GQRVGIF+++GVGKSTL++M+    +AD NV+ LI
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  182  GERGREVREFIERDLGPEGLARSIVVVATSDQPALMRVKGAYTATAIAEYFRDQGMDVMF  241
            GERGREVREFI+  L+ E   R ++VVATSD+PAL RV++ + AT+IAE+FRD+G  V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  242  MMDSVTRVAMAQREIGLAIGEPPTTKGYTPSVFAILPKLLERTGTNACGTITAFYTVLVD  301
            + DS+TR A A REI+LA GE + +  Y P+VF+ LP+LLERTG    G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  302  GDDMNEPIADTVRGILDGHFVLERSLANKGQYPAINVLKSVSRVMNHIISPEHRQAADKL  361
            GDDMNEP+AD VR++LDGH+VL R LA++G+YPAI+VL ++SRV   + S EHRQ A  L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  362  RQLLSTYINSEDLINIGAYKRGSSKEIDEAIRYYPEIISFCKQDIDEKATKDESIETLLR  421
            R+ L+ Y + E LI IG Y+RG   + D AI  YP+I +F +Q  DE    +  IE L +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

Query  422  LM  423
            ++
Sbjct  430  IL  431

260) fliI in NC_018664


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  316 bits (1183),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 196/398 (50%), Positives = 287/398 (73%), Gaps = 7/398 (1%)

Query  26   SGKITKVTGLTIESEGPLSSIGELCYIYPFNEQEPILAEVVGFKEDKILLMPFGEMEGIR  85
             G+I  V++  +++  P   +GELC I P +E    LAEVVG++  K LL PF    G++
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  86   PGSTVVASGHSLRVNVGDQLIGRVIDGLGNPMDGKG-SIKTEKHYSVSNSPPNPLERKTI  144
             G  V+A  +  +V VG+ L+GRVIDG+G P+DG+  +    K+Y     PP ++ R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPI  135

Query  145  REVLPLGVKAIDGLLTCGKGQRIGIFAGSGVGKSTLMGMIARNAEADINVIGLIGERGRE  204
             + L  G++AID++ TCG GQR+GIF+++GVGKSTL++M+   ++AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  205  VREFIENDLKEEGLKKSVLVIATSDQPALVRMKAAMLTTAIAEYFRDKGKNVIMLMDSLT  264
            VREFI+  L EE  K+ V+V+ATSD+PAL R++A  ++T+IAE+FRD+GK V++L DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  265  RFAMAQREIGLAIGEPPVTRGYTPSVFAVFPKLLERSGASSKGTITGLYTVLVDGDDMNE  324
            R+A A REI+LA GE +V+  Y P+VF+ +P+LLER+G + KG+IT++YTVLV+GDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  325  PITDTVRGILDGHIVLSRKLASQNHYPAIDVLQSISRVMSNICDEEQISTANKVKDLMAT  384
            P++D VR++LDGHIVLSR+LA + HYPAIDVL ++SRV + +  +E+   A  ++  +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  385  YKESEDLINIGAYKKGTskkidqsidsidsiNNFLKQN  422
            Y+E E LI IG Y++G     D++ID+   I  FL+Q+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

261) Ccel_2048 in NC_011898


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  315 bits (1181),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 200/416 (49%), Positives = 290/416 (70%), Gaps = 12/416 (2%)

Query  7    LKYREALKSKEYIDYIGKVSKVVGLTIESDGPQVSIGDLCNIHIIGGSKLKAEVVGFKDE  66
            LKY  +     Y    G++  V +  +++  P V +G+LC I    G  L AEVVG+++ 
Sbjct  11   LKYPPP---DGYCRW-GRIQDVSATLLNAWLPGVFMGELCCIK--PGEEL-AEVVGINGS  63

Query  67   KVLLMPLGEMTGIGPGSTVSANGDILKVAVGPQLVGRVLDGLGNPIDDKG--SLQSKHYY  124
            K LL P+   +G+  G  V A     +V+VG  L+GRV+DG+G P+D++    +  K+Y 
Sbjct  64   KALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY-  122

Query  125  KTDNKPPNPLTRKRISEPLPLGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMVARNTK  184
              D  PP ++ R+ I++PL  G+RAID++ T G GQRVGIF+++GVGKSTL++M+     
Sbjct  123  --DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  185  ADINVIALIGERGREVREFLERDLTDEGLARSVVVVATSDQPALIRLKGAMVATAIAEYF  244
            AD NV+ LIGERGREVREF++  L++E   R V+VVATSD+PAL R+++  VAT+IAE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  245  RDCGKDVLLLMDSLTRYAMAQREVGLSIGEPPVSRGYTPSVFSVFPKLLERAGTSDKGSI  304
            RD GK V+LL DSLTRYA A RE++L+ GE +VS  Y P+VFS +P+LLER+G ++KGSI
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  305  TGLYTVLVDGDDLTEPVTDTARGILDGHIVLSRSMANKNHYPAIDVLASVSRVMGDIIDK  364
            T++YTVLV+GDD+ EP++D  R++LDGHIVLSR +A++ HYPAIDVLA++SRV   +   
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  365  EHKKSANEIKKVMAVHRDSEDLINIGAYVKGSNEKIDYAIECIEDITSFLQQETDE  420
            EH++ A  +++ +A+ ++ E LI IG Y +G +   D AI+   DI +FL+Q  DE
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

262) Desca_1795 in NC_015565


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  315 bits (1182),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 195/398 (49%), Positives = 280/398 (71%), Gaps = 7/398 (1%)

Query  45   IGEVCDILVDGEPEPVRAEVVGFRDQHSLLMPLGELRGIYPGSAVVPSGRTLTVKVGEHL  104
            +GE+C I     P    AEVVG+ +  +LL P+    G+  G  V++  R   V VGE L
Sbjct  42   MGELCCI----KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  105  RGKVLDGLGRPLEG-DIHNGQAEDFPVDNRPPNPLKRKRIDTVLPTGVRAVDALLTCGKG  163
             G+V+DG+GRPL+G ++ +    D+  D  PP ++ R+ I   L TG+RA+D++ TCG G
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  164  QRIGIFAGSGVGKSTLLGMIARHGGADVNVIGLIGERGREVLEFLEEDLGPEGMAKSIVV  223
            QR+GIF+++GVGKSTLL+M+    +AD NV+ LIGERGREV EF++  L+ E   + ++V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  224  AATSDQPALVRLKGAFVATAIAEYFRDRGLDVMLMMDSVTRFAMAQREVGLAVGEPPATK  283
             ATSD+PAL R+++ FVAT+IAE+FRD G  V+L+ DS+TR+A A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  284  GYTPSVFALLPKLLERSGMGQNGSITAFYTVLVDGDDLNEPIADAVRGILDGHIVLNRSL  343
             Y P+VF+ LP+LLER+GMG++GSITAFYTVLV+GDD+NEP+AD VR++LDGHIVL+R L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  344  ASRNHYPAIDVLQSVSRLMPDIVSEEHKAQAGMVKDLLAAYLQAEDLINIGAYVKGSNPK  403
            A R HYPAIDVL ++SR+ P + S+EH+  A++++  LA Y + E LI IG Y +G +  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  404  IDAAIAKYDGIINFLRQQPGEFSSYEETLNGLASLVAE  441
             D AI  Y +I  FLRQ  +E  + E  ++ L  +++E
Sbjct  396  TDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

263) Desmer_3913 in NC_018515


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  315 bits (1182),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 198/420 (48%), Positives = 297/420 (71%), Gaps = 5/420 (1%)

Query  15   EPFSAQGRVSKIVGLMVESAGPRASVGEYCHIITRGGLELPAEVVGFRDSTTLLMPLGEL  74
            + +   GR+  + + ++++  P   +GE C I  + G EL AEVVG+ +S +LL P+   
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLSPFTST  73

Query  75   EGIAPGDRVLSQRQKLTVSVGPGLLGRIFDGLGHPLDGRPLQTITAYPLQNKPPSAILRP  134
             G+  G++V++ R++  V+VG +LLGR++DG+G+PLDGR L  +     +  PP+A++R 
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQ  133

Query  135  RIQDPLSVGVRTIDGILTIGRGQRMGIFAGSGVGKSTLLGMMARNTVADINVIALIGERG  194
             I +PL  G+R+ID++ T G GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  195  RELRDFIEKDLGPEGLARSVIIVATSDQPALVRLKAALTATAVAEYFRDQGKNVLLMMDS  254
            RE+R+FI+  L+ E   R VI+VATSD+PAL R++A + AT++AE+FRD+GK V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  255  VTRFAMAQREVGLTVGEPPATRGYPPSVFALLPKLLERAGMAEVGSITGIYTVLVDGDDH  314
            +TR+A A RE++L+ GE + +  YPP+VF+ LP+LLER+GM+E GSIT++YTVLV+GDD 
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  315  NEPIADSVRGILDGHIVLTRELAMQNMFPAIDILQSVSRVMNDVVSPDQKTLAGQVREYI  374
            NEP+AD VR++LDGHIVL+R LA +  +PAID+L ++SRV   V S +++ LA+ +R  +
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  375  AIYRDAKDLIDIGAYTPGSNPKIDAAIAHMDRIQGFSRQMVDEYVTYPEML-KQLQGIFS  433
            A+Y++   LI IG Y  G +   D AI     I  F RQ  DE V  PE+L  +L+ I++
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE-VCGPELLIEKLHQILT  432

264) fliI in NC_009697


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  315 bits (1181),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 192/379 (51%), Positives = 278/379 (74%), Gaps = 3/379 (0%)

Query  43   FVGEVCIIYNEKNQTIPCEVVGFKEENVILMPLGELIGIAPGCKVIPQGKPLSVICSENI  102
            F+GE+C I    + +   EVVG++  + +L P+    G+  G +V++  +   V  +E +
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  103  LGKVLDGLGNPLEGEELMEGSPYALDSDPPDPMKRRRIKDVIPTGIKAIDGFITVGEGQR  162
            LG+V+DG+G PL+G EL E      D+ PP +M R+ I + + TGI+AID+  T GEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  163  IGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREVRDFIEKDLGEEGLKKSVIVCA  222
            +GIF+++GVGKST L+M+ + ++AD NV+ LIGERGREVR+FI+  L+EE  K+ VIV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  223  TSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTRFAMAQREIGLAIGEPPATKGY  282
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A REI+LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  283  TPSVFAKLPRLMERTGMSNKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRSLAA  342
             P+VF+ LPRL+ERTGM++KGSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  343  KNHYPAIDILSSVSRLMSEIASKEHKNAAGVARDLLATYKNSEDLINIGAYVKGSNPKVD  402
            + HYPAID+L+++SR+ + ++S EH++ A++ R  LA Y++ E LI IG Y +G +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  403  MAIHYHESILSFLKQGISE  421
             AI+    I +FL+Q+  E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

265) fliI in NC_009698


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  315 bits (1181),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 192/379 (51%), Positives = 278/379 (74%), Gaps = 3/379 (0%)

Query  43   FVGEVCIIYNEKNQTIPCEVVGFKEENVILMPLGELIGIAPGCKVIPQGKPLSVICSENI  102
            F+GE+C I    + +   EVVG++  + +L P+    G+  G +V++  +   V  +E +
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  103  LGKVLDGLGNPLEGEELMEGSPYALDSDPPDPMKRRRIKDVIPTGIKAIDGFITVGEGQR  162
            LG+V+DG+G PL+G EL E      D+ PP +M R+ I + + TGI+AID+  T GEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  163  IGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREVRDFIEKDLGEEGLKKSVIVCA  222
            +GIF+++GVGKST L+M+ + ++AD NV+ LIGERGREVR+FI+  L+EE  K+ VIV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  223  TSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTRFAMAQREIGLAIGEPPATKGY  282
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A REI+LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  283  TPSVFAKLPRLMERTGMSNKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRSLAA  342
             P+VF+ LPRL+ERTGM++KGSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  343  KNHYPAIDILSSVSRLMSEIASKEHKNAAGVARDLLATYKNSEDLINIGAYVKGSNPKVD  402
            + HYPAID+L+++SR+ + ++S EH++ A++ R  LA Y++ E LI IG Y +G +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  403  MAIHYHESILSFLKQGISE  421
             AI+    I +FL+Q+  E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

266) Halha_0655 in NC_019978


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  315 bits (1181),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 196/402 (49%), Positives = 289/402 (72%), Gaps = 7/402 (1%)

Query  22   RFGKVKQVVGLTIESQGPTVQLGELCLIETNSNSEMIKAEVVGFKDTSVLLMPLGDMKGI  81
            R G++++V +  +++  P V +GELC I  ++  E+  AEVVG++++  LL P+    G+
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL--AEVVGINGSKALLSPFTSTAGL  76

Query  82   GPGCKVFATGESLQIEVSDELLGTVLDGLGHPVSEEKL-DVTGEKYPVDNDPPDPLARQR  140
              G +V A     Q+ V++ LLG V+DG+G+P+    L +V    Y  D  PP ++ RQ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQP  134

Query  141  ISEPLSLGVRSLDGLLTCGKGQRMGIFAGSGVGKSTLLGMIARNTDADINVIALIGERGR  200
            I++PL  G+R++D++ TCG GQR+GIF+++GVGKSTLL+M+    DAD NV+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  201  EVREFIEESLGPEGLKKSVVIVATSDQPALVRLKGAMVATSIAEYFRDQGNDVMLMMDSV  260
            EVREFI+ +L+ E  K+ V++VATSD+PAL R+++  VAT+IAE+FRD+G+ V+L+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  261  TRFAMAQREVGLAVGEPPATRGYTPSVFALLPKLLERSGAGEVGTITGLYTVLVEGDDMN  320
            TR+A A RE++LA GE + +  Y P+VF+ LP+LLER+G GE G+IT++YTVLVEGDDMN
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  321  EPIADAVRGILDGHIVLSRDLAAQNHYPAIDILESVSRVMDEIASAEHKEAAGKLREVLA  380
            EP+AD VR++LDGHIVLSR LA + HYPAID+L ++SRV   ++S EH++ A+ LR  LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  TYEESKDLVNLGVYEAGSDPQLDYALDKLEAVNNFLQQGVKE  422
             Y+E   L+ +G Y+ G D + D A+D    +  FL+Q+  E
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

267) TherJR_1539 in NC_014152


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  315 bits (1180),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 194/404 (49%), Positives = 288/404 (72%), Gaps = 9/404 (2%)

Query  21   GKVTQIIGLVVESQGPSANLGELCYIYPNVGDCKLKAEVVGFKENRILLMPLGDLTGIGP  80
            G++ ++ + ++++  P+  +GELC I P        AEVVG++ ++ LL P+   +G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLHC  78

Query  81   GCEVVATGHSFKIGVSSKMLGRVIDGLGNPIDG--LGPIEWETEYPVSGPPPNPLERKRI  138
            G +V+A  +  ++ V+  +LGRVIDG+G P+DG  L  + W  +Y   + PP ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCW-KDY--DAMPPPAMVRQPI  135

Query  139  TEPLSVGVKAVDGLLTCGKGQRVGIFSGSGVGKSTLLGMIARNTAADINVIALIGERGRE  198
            T+PL  G++A+D++ TCG GQRVGIFS++GVGKSTLL+M+     AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  199  VREFLEKDLGEEGLRRSVVVVATSDQPALVRLKGALVATSIAEYFRDQGKDVMLMMDSVT  258
            VREF++  L+EE  +R V+VVATSD+PAL R+++ +VAT+IAE+FRD+GK V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  259  RFAMAQREVGLAVGEPPATRGYTPSVFALLPKLLERSGTSRHGTITGLYTVLVDGDDHNE  318
            R+A A RE++LA GE + +  Y P+VF+ LP+LLER+G +  G+IT++YTVLV+GDD NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  319  PIADAVRGILDGHIVLSRDLAMQNQYPAIDILASVSRVMPDIVSEEHRKAAQEIKSILAT  378
            P+AD VR++LDGHIVLSR LA + +YPAID+LA++SRV P + S+EHR+ A  ++  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  379  YRDAKDLIDIGAYHKGSNPKIDYALSKLDDTLNFLKQDVKEHYG  422
            Y++   LI IG Y++G +   D A+    D   FL+Q   E  G
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

268) Thebr_1283 in NC_014964


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  315 bits (1181),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 197/404 (49%), Positives = 287/404 (72%), Gaps = 8/404 (1%)

Query  17   YGKVSQVIGLTIESTGPLSNIGEICNIKTINGNTILAEVVGFKEEKVYLMPLGNMEGIGA  76
             G++ +V +  +++  P   +GE+C IK  +    LAEVVG++  K  L P+ +  G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHC  78

Query  77   GSKVIATGQTLRVNVGNELLGRVLDGLGNPIDGKG--PIKFEKSIPINNVPPDPLERKRI  134
            G +V+A  +  +V VG+ LLGRV+DG+G P+DG+    +        + +PP ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD---YDAMPPPAMVRQPI  135

Query  135  REVMSLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKADLNVIALIGERGRE  194
             + +  GI+AID++ TCG GQR+GIF+++GVGKSTLL+M+   + AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  195  VNEFLEKDLGEEGLKKSVVVVATSDTPALIRVKGAMTATAIAEYFRDQGLDVLLMMDSVT  254
            V EF++  L+EE  K+ V+VVATSD PAL RV++   AT+IAE+FRD+G  V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  255  RFAMAQREVGLSIGEAPVSRGYTPSVFSVLPKLLERSGCSKKGSITALYTVLVDGDDLNE  314
            R+A A RE++L+ GE++VS  Y P+VFS LP+LLER+G + KGSITA+YTVLV+GDD+NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  315  PIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVINDIITEEHKELIARFKDILAT  374
            P+AD VR++LDGHIVLSR+LA++ HYPAIDVLA++SRV+  + ++EH++L A ++  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  375  YTEAEDLINIGAYNFGSNPKIDEAIELNDKMNNFLRQRIDESYD  418
            Y E E LI IG Y+ G +   D AI+    +  FLRQ  DE  +
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

269) Teth39_1254 in NC_010321


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  315 bits (1181),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 197/404 (49%), Positives = 287/404 (72%), Gaps = 8/404 (1%)

Query  22   YGKVSQVIGLTIESTGPLSNIGEICNIKTINGNTILAEVVGFKEEKVYLMPLGNMEGIGA  81
             G++ +V +  +++  P   +GE+C IK  +    LAEVVG++  K  L P+ +  G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHC  78

Query  82   GSKVIATGQTLRVNVGNELLGRVLDGLGNPIDGKG--PIKFEKSIPINNVPPDPLERKRI  139
            G +V+A  +  +V VG+ LLGRV+DG+G P+DG+    +        + +PP ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD---YDAMPPPAMVRQPI  135

Query  140  REVMSLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKADLNVIALIGERGRE  199
             + +  GI+AID++ TCG GQR+GIF+++GVGKSTLL+M+   + AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  200  VNEFLEKDLGEEGLKKSVVVVATSDTPALIRVKGAMTATAIAEYFRDQGLDVLLMMDSVT  259
            V EF++  L+EE  K+ V+VVATSD PAL RV++   AT+IAE+FRD+G  V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  260  RFAMAQREVGLSIGEAPVSRGYTPSVFSVLPKLLERSGCSKKGSITALYTVLVDGDDLNE  319
            R+A A RE++L+ GE++VS  Y P+VFS LP+LLER+G + KGSITA+YTVLV+GDD+NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  320  PIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVINDIITEEHKELIARFKDILAT  379
            P+AD VR++LDGHIVLSR+LA++ HYPAIDVLA++SRV+  + ++EH++L A ++  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YTEAEDLINIGAYNFGSNPKIDEAIELNDKMNNFLRQRIDESYD  423
            Y E E LI IG Y+ G +   D AI+    +  FLRQ  DE  +
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

270) Thet_1210 in NC_014538


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  315 bits (1181),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 197/404 (49%), Positives = 287/404 (72%), Gaps = 8/404 (1%)

Query  17   YGKVSQVIGLTIESTGPLSNIGEICNIKTINGNTILAEVVGFKEEKVYLMPLGNMEGIGA  76
             G++ +V +  +++  P   +GE+C IK  +    LAEVVG++  K  L P+ +  G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHC  78

Query  77   GSKVIATGQTLRVNVGNELLGRVLDGLGNPIDGKG--PIKFEKSIPINNVPPDPLERKRI  134
            G +V+A  +  +V VG+ LLGRV+DG+G P+DG+    +        + +PP ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD---YDAMPPPAMVRQPI  135

Query  135  REVMSLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKADLNVIALIGERGRE  194
             + +  GI+AID++ TCG GQR+GIF+++GVGKSTLL+M+   + AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  195  VNEFLEKDLGEEGLKKSVVVVATSDTPALIRVKGAMTATAIAEYFRDQGLDVLLMMDSVT  254
            V EF++  L+EE  K+ V+VVATSD PAL RV++   AT+IAE+FRD+G  V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  255  RFAMAQREVGLSIGEAPVSRGYTPSVFSVLPKLLERSGCSKKGSITALYTVLVDGDDLNE  314
            R+A A RE++L+ GE++VS  Y P+VFS LP+LLER+G + KGSITA+YTVLV+GDD+NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  315  PIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVINDIITEEHKELIARFKDILAT  374
            P+AD VR++LDGHIVLSR+LA++ HYPAIDVLA++SRV+  + ++EH++L A ++  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  375  YTEAEDLINIGAYNFGSNPKIDEAIELNDKMNNFLRQRIDESYD  418
            Y E E LI IG Y+ G +   D AI+    +  FLRQ  DE  +
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

271) Teth514_1690 in NC_010320


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  315 bits (1181),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 197/404 (49%), Positives = 287/404 (72%), Gaps = 8/404 (1%)

Query  22   YGKVSQVIGLTIESTGPLSNIGEICNIKTINGNTILAEVVGFKEEKVYLMPLGNMEGIGA  81
             G++ +V +  +++  P   +GE+C IK  +    LAEVVG++  K  L P+ +  G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHC  78

Query  82   GSKVIATGQTLRVNVGNELLGRVLDGLGNPIDGKG--PIKFEKSIPINNVPPDPLERKRI  139
            G +V+A  +  +V VG+ LLGRV+DG+G P+DG+    +        + +PP ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD---YDAMPPPAMVRQPI  135

Query  140  REVMSLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKADLNVIALIGERGRE  199
             + +  GI+AID++ TCG GQR+GIF+++GVGKSTLL+M+   + AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  200  VNEFLEKDLGEEGLKKSVVVVATSDTPALIRVKGAMTATAIAEYFRDQGLDVLLMMDSVT  259
            V EF++  L+EE  K+ V+VVATSD PAL RV++   AT+IAE+FRD+G  V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  260  RFAMAQREVGLSIGEAPVSRGYTPSVFSVLPKLLERSGCSKKGSITALYTVLVDGDDLNE  319
            R+A A RE++L+ GE++VS  Y P+VFS LP+LLER+G + KGSITA+YTVLV+GDD+NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  320  PIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVINDIITEEHKELIARFKDILAT  379
            P+AD VR++LDGHIVLSR+LA++ HYPAIDVLA++SRV+  + ++EH++L A ++  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YTEAEDLINIGAYNFGSNPKIDEAIELNDKMNNFLRQRIDESYD  423
            Y E E LI IG Y+ G +   D AI+    +  FLRQ  DE  +
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

272) fliI in NC_009495


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  314 bits (1179),  Expect = 5e-87, Method: Compositional matrix adjust.
 Identities = 191/379 (51%), Positives = 278/379 (74%), Gaps = 3/379 (0%)

Query  43   FVGEVCIIYNEKNQTIPCEVVGFKEENVILMPLGELIGIAPGCKVIPQGKPLSVICSENI  102
            F+GE+C I    + +   EVVG++  + +L P+    G+  G +V++  +   V  +E +
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  103  LGKVLDGLGNPLEGEELMEGSPYALDSDPPDPMKRRRIKDVIPTGIKAIDGFITVGEGQR  162
            LG+V+DG+G PL+G EL E      D+ PP +M R+ I + + TGI+AID+  T GEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  163  IGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREVRDFIEKDLGEEGLKKSVIVCA  222
            +GIF+++GVGKST L+M+ + ++AD NV+ LIGERGREVR+FI+  L+EE  K+ VIV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  223  TSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTRFAMAQREIGLAIGEPPATKGY  282
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A REI+LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  283  TPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRSLAA  342
             P+VF+ LPRL+ER+GM++KGSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  343  KNHYPAIDILSSVSRLMSEIASKEHKNAAGVARDLLATYKNSEDLINIGAYVKGSNPKVD  402
            + HYPAID+L+++SR+ + ++S EH++ A++ R  LA Y++ E LI IG Y +G +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  403  MAIHYHESILSFLKQGISE  421
             AI+    I +FL+Q+  E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

273) fliI in NC_011653


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  314 bits (1179),  Expect = 5e-87, Method: Compositional matrix adjust.
 Identities = 203/419 (49%), Positives = 297/419 (71%), Gaps = 11/419 (2%)

Query  1    MNRLELLKKRFENFNPYQKIGSVSKIVGLTIESKGPDAFLGELCKIITDYKKTLAEVVGF  60
            M+RL L   ++   + Y + G +  + +  +++  P+ F+GELC I  +    LAEVVG+
Sbjct  6    MQRLRL---KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPG--EELAEVVGI  60

Query  61   NDNGIILMPLEDISGLKKGCQVLKTGEYVSVPVSEELLGKVIDSLGRPLDGKK---IYTK  117
            N++  +L P+   +GL  G QV+       VPV+E LLG+VID++GRPLDG+    +  K
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  118  EKVPIVREAPNPLVRKRITTPISVGVRAIDGFLTLGYGQRIGIFAGSGVGKSTLLGMVAR  177
            +  ++   +P ++VR+ IT P+  G+RAID+  T G GQR+GIF+++GVGKSTLL+M+  
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  178  NTSADINVISLIGERGREVREFIEKDLKKEGLKRSVVVVSTSDQPALLRVKALLTATSIA  237
               AD NV+ LIGERGREVREFI+  L  E  KR V+VV+TSD+PAL RV+AL+ AT+IA
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  238  EYFRDKGYNVLLMVDSLTRWAIAQREVGLATGEPPTTRGYPPSVFAGLPKILERAGNSDK  297
            E+FRD+G  V+L+ DSLTR A A RE++LA+GE + +  YPP+VF++LP++LER+G ++K
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK  297

Query  298  GSITGIYTVLVESDDFNEPISDTVRGIVDGHIILSRKLAESAHYPAIDILMSVSRLMNDI  357
            GSIT++YTVLVE+DD NEP++D VR+++DGHI+LSR+LAE +HYPAID+L ++SR+   +
Sbjct  298  GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVV  357

Query  358  TRKEHKIAALKIKDLLATYYDAKDLIDVGAYKKGTNPKIDKAIELIDEINKFLRQSVDE  416
            T  EH+  A  ++  LA Y +   LI +G Y++G +   DKAI+   +I  FLRQS DE
Sbjct  358  TSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

274) Bcell_2500 in NC_014829


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  314 bits (1179),  Expect = 5e-87, Method: Compositional matrix adjust.
 Identities = 187/407 (46%), Positives = 289/407 (72%), Gaps = 7/407 (1%)

Query  13   SSFKHYGKVSQVVGLMIESKGPRVSVGDICYILVGKTKPFRKIMVEVVGFRDENVLLMPF  72
             ++ + G++ +V + ++++  P V +G++C I  G        + EVVG+ + + LL PF
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE------LAEVVGINGSKALLSPF  70

Query  73   DATTEIAPGSLVEATNKPLQIKIGTSLVGQVVDGLGRPLDHTELKNGLtnfptdntppnp  132
             +T+ +  G  V A  +  Q+ +G +L+G+V+DG+GRPLD  EL + +     D  PP +
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCWKDYDAMPPPA  129

Query  133  LKRPRITEALSLGIRAIDGLFTVGKGQRIGIFAGSGVGKSTLMAMIAKNSEADINVIALI  192
            + R  IT++L  GIRAID++ T G GQR+GIF+++GVGKSTL+AM+ + ++AD NV+ LI
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  193  GERGREVRDFVERDLNEDGLKNTIVVVATSDQPALMRIKGAMTATAIAEFFRNQGLNVNL  252
            GERGREVR+F++  L+E+  K  ++VVATSD+PAL R+++   AT+IAEFFR++G  V L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  253  MMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFATLPKLLERSGTNEYGTITAFYTVLVD  312
            + DS+TR A A REI+LA GE + +  Y P+VF++LP+LLER+G  E G+ITAFYTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  313  GDDLNEPIADTVRGILDGHLVLDRKLANKGQFPAINVLTSISRLMNDLVTPEHKLAADKV  372
            GDD+NEP+AD VR++LDGH+VL R+LA++G++PAI+VL+++SR+   + + EH+  A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  373  RNYLSQYYDSEDLISIGAYKRGTNKDLDEAIKLYPQVINYIKQDLHE  419
            R  L+ Y + E LI IG Y+RG + D D AI  YP++  +++Q  +E
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

275) fliI in NC_017297


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  314 bits (1179),  Expect = 6e-87, Method: Compositional matrix adjust.
 Identities = 192/379 (51%), Positives = 279/379 (74%), Gaps = 3/379 (0%)

Query  43   FVGEVCIIYNEKNQTIPCEVVGFKEENVILMPLGELIGIAPGCKVIPQGKPLSVICSENI  102
            F+GE+C I    + +   EVVG++  + +L P+    G+  G +V++  +   V  +E +
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  103  LGKVLDGLGNPLEGEELMEGSPYALDSDPPDPMKRRRIKDVIPTGIKAIDGFITVGEGQR  162
            LG+V+DG+G PL+G EL E      D+ PP +M R+ I + + TGI+AID+  T GEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  163  IGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREVRDFIEKDLGEEGLKKSVIVCA  222
            +GIF+++GVGKST L+M+ + ++AD NV+ LIGERGREVR+FI+  L+EE  K+ VIV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  223  TSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTRFAMAQREIGLAIGEPPATKGY  282
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A REI+LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  283  TPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRSLAA  342
             P+VF+ LPRL+ER+GM++KGSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  343  KNHYPAIDVLSSVSRLMSEIASKEHKDAAGMARDLLATYKNSEDLINIGAYVKGSNPKVD  402
            + HYPAIDVL+++SR+ + ++S EH++ A++ R  LA Y++ E LI IG Y +G +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  403  MAIHYHESILSFLKQGIGE  421
             AI+    I +FL+Q+ +E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

276) fliI in NC_009699


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  314 bits (1179),  Expect = 6e-87, Method: Compositional matrix adjust.
 Identities = 192/379 (51%), Positives = 279/379 (74%), Gaps = 3/379 (0%)

Query  43   FVGEVCIIYNEKNQTIPCEVVGFKEENVILMPLGELIGIAPGCKVIPQGKPLSVICSENI  102
            F+GE+C I    + +   EVVG++  + +L P+    G+  G +V++  +   V  +E +
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  103  LGKVLDGLGNPLEGEELMEGSPYALDSDPPDPMKRRRIKDVIPTGIKAIDGFITVGEGQR  162
            LG+V+DG+G PL+G EL E      D+ PP +M R+ I + + TGI+AID+  T GEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  163  IGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREVRDFIEKDLGEEGLKKSVIVCA  222
            +GIF+++GVGKST L+M+ + ++AD NV+ LIGERGREVR+FI+  L+EE  K+ VIV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  223  TSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTRFAMAQREIGLAIGEPPATKGY  282
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A REI+LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  283  TPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRSLAA  342
             P+VF+ LPRL+ER+GM++KGSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  343  KNHYPAIDVLSSVSRLMSEIASKEHKDAAGMARDLLATYKNSEDLINIGAYVKGSNPKVD  402
            + HYPAIDVL+++SR+ + ++S EH++ A++ R  LA Y++ E LI IG Y +G +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  403  MAIHYHESILSFLKQGIGE  421
             AI+    I +FL+Q+ +E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

277) Csac_1260 in NC_009437


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  314 bits (1179),  Expect = 6e-87, Method: Compositional matrix adjust.
 Identities = 212/433 (49%), Positives = 305/433 (71%), Gaps = 7/433 (1%)

Query  1    MFERLKTKIESTNFYQFTGFVNQVIGLTIESIGPAVSIGTLCKIKTAKSETLAEVVGFKE  60
            + +RL+ K  + + Y   G +++V +  +++  P+V +G LC IK +  E LAEVVG++ 
Sbjct  5    LMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPG--EELAEVVGING  62

Query  61   NKVLLMPYSDLVGIFPGCKVIAQDSIFEVKVGEELLGRILDGLGQPIDGKG--EIKSKIK  118
            +K LL P++   G+  G +V+A     +V VGE LLGR++DG+G+P+DG+   E+  K  
Sbjct  63   SKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK-D  121

Query  119  YPVENRAPNPLERPRIDSVMPLGIKAIDALITIGKGQRVGIFAGSGVGKSTLLGMIARNA  178
            Y  +  +P ++ R  I   +  GI+AID++ T G GQRVGIF+++GVGKSTLL+M+   +
Sbjct  122  Y--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAP  179

Query  179  KADVNVLALIGERGRelkeflekdlkeeglkRSVVIVATSDESALKRVKAAYVAMAIAEY  238
             AD NVL LIGERGRE++EF++  L EE  KR V++VATSD +AL RV+A +VA +IAE+
Sbjct  180  DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEF  239

Query  239  FRDQGMDVLFMMDSLTRFAMAQREIGLAIGEPPVSRGYTPSVFSIMPKLLERAGKNQKGS  298
            FRD+G  V+++ DSLTR+A A REI+LA GE +VS  Y P+VFS +P+LLER+G  +KGS
Sbjct  240  FRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGS  299

Query  299  ITALYTVLVDGDDFNEPITDTARGILDGHIVLSRSIANKNHYPAIDVLASISRVMNDIVS  358
            ITA+YTVLV+GDD NEP++D  R++LDGHIVLSR +A++ HYPAIDVLA++SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  359  PEHKEVANETKRILATYKEAEDLITIGAYTKGTNSEIDRAIDLMPRINEFLRQDVDESFE  418
             EH+++A   +R LA Y+E E LI IG Y +G +++ D+AID  P I  FLRQ  DE   
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  419  FEQELEMLKSIIS  431
             E  +E L  I++
Sbjct  420  PELLIEKLHQILT  432

278) Thewi_1394 in NC_015958


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  314 bits (1178),  Expect = 6e-87, Method: Compositional matrix adjust.
 Identities = 196/404 (49%), Positives = 288/404 (72%), Gaps = 8/404 (1%)

Query  21   YGKVSQVIGLTIESTGPLSNIGEICNIKTINGNTILAEVVGFKEEKVYLMPLGNMEGIGA  80
             G++ +V +  +++  P   +GE+C IK  +    LAEVVG++  K  L P+ +  G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHC  78

Query  81   GSKVIATGQTLRINVGNELLGRVLDGLGNPIDGKG--PIKFEKSIPINNVPPDPLERKRI  138
            G +V+A  +  ++ VG+ LLGRV+DG+G P+DG+    +        + +PP ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD---YDAMPPPAMVRQPI  135

Query  139  REVIPLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKADLNVIALIGERGRE  198
             + +  GI+AID++ TCG GQR+GIF+++GVGKSTLL+M+   + AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  199  VNEFLEKDLGEEGLKKSVVVVATSDTPALIRVKGAMTATAIAEYFRDQGLDVLLMMDSVT  258
            V EF++  L+EE  K+ V+VVATSD PAL RV++   AT+IAE+FRD+G  V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  259  RFAMAQREVGLSIGEAPVSRGYTPSVFSVLPKLLERSGCSKKGSITALYTVLVDGDDLNE  318
            R+A A RE++L+ GE++VS  Y P+VFS LP+LLER+G + KGSITA+YTVLV+GDD+NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  319  PIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVINDIITEEHKELIARFKDILAT  378
            P+AD VR++LDGHIVLSR+LA++ HYPAIDVLA++SRV+  + ++EH++L A ++  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  379  YTEAEDLINIGAYNFGSNPKIDEAIELNEKMNSFLRQRIDESYD  422
            Y E E LI IG Y+ G +   D AI+    + +FLRQ  DE  +
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

279) fliI in NC_012563


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  314 bits (1177),  Expect = 7e-87, Method: Compositional matrix adjust.
 Identities = 191/379 (51%), Positives = 278/379 (74%), Gaps = 3/379 (0%)

Query  43   FVGEVCIIYNEKNQTIPCEVVGFKEENVILMPLGELIGIAPGCKVIPQGKPLSVICSENI  102
            F+GE+C I    + +   EVVG++  + +L P+    G+  G +V++  +   V  +E +
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  103  LGKVLDGLGNPLEGEELMEGSPYALDSDPPDPMKRRRIKDVIPTGIKAIDGFITVGEGQR  162
            LG+V+DG+G PL+G EL E      D+ PP +M R+ I + + TGI+AID+  T GEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  163  IGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREVRDFIEKDLGEEGLKKSVIVCA  222
            +GIF+++GVGKST L+M+ + ++AD NV+ LIGERGREVR+FI+  L+EE  K+ VIV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  223  TSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTRFAMAQREIGLAIGEPPATKGY  282
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A REI+LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  283  TPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRSLAA  342
             P+VF+ LPRL+ER+GM++KGSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  343  KNHYPAIDILSSVSRLMSEIASKEHKNAAGMARDLLATYKNSEDLINIGAYVKGSNPKVD  402
            + HYPAID+L+++SR+ + ++S EH++ A++ R  LA Y++ E LI IG Y +G +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  403  MAIHYHESILSFLKQGISE  421
             AI+    I +FL+Q+  E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

280) fliI in NC_014328


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  314 bits (1177),  Expect = 7e-87, Method: Compositional matrix adjust.
 Identities = 187/376 (50%), Positives = 278/376 (74%), Gaps = 3/376 (0%)

Query  41   FVGEVCHIYNEENSKISCEVVGFNESNVILMPLGELIGISPGCRVVPERMPLNVRCSDEL  100
            F+GE+C I   E+     EVVG+N S+ +L P+    G+  G +V++ R   +V  ++ L
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  101  FGKVLDGLGNPLDGAYISSGVPYPLDTEPPDPLKRRRITEVIATGVRAIDGFLTCGQGQR  160
            +G+V+DG+G PLDG  ++       D+ PP ++ R+ IT+ + TG+RAID+  TCG+GQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  161  IGIFAGSGVGKSTTLGMIAKYAEADVNVIALIGERGREVKDFIEKDLGEEGMKKSIIVCA  220
            +GIF+++GVGKST L+M+ + ++AD NV+ LIGERGREV++FI+  L+EE  K+ +IV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  221  TSDKPALVRLKGAFTATAIAEYFRDKGKKVILMMDSVTRFAMAQREIGLAIGEPPATKGY  280
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A REI+LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  281  TPSVFAKLPRLMERAGTSDIGSITAFYTVLVDGDDLNEPIADAVRGILDGHIVLSRTLAN  340
             P+VF+ LPRL+ER+G ++ GSITAFYTVLV+GDD+NEP+AD VR++LDGHIVLSR LA+
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  341  KNHYPAIDVLASISRLMSEIAESDHKKNASFARDMLSTYKNSEDLINIGAYVKGSSEKID  400
            + HYPAIDVLA++SR+ + ++  +H++ A++ R  L+ Y++ E LI IG Y +G     D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  401  KAVACYDKIIAYLRQD  416
            KA+  Y  I ++LRQ 
Sbjct  398  KAIDTYPDICTFLRQS  413

281) fliI in NC_012658


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  314 bits (1177),  Expect = 8e-87, Method: Compositional matrix adjust.
 Identities = 191/379 (51%), Positives = 279/379 (74%), Gaps = 3/379 (0%)

Query  43   FVGEVCIIYNEKNQTIPCEVVGFKEENVILMPLGELIGIAPGCKVIPQGKPLSVICSENI  102
            F+GE+C I    + +   EVVG++  + +L P+    G+  G +V++  +   V  +E +
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  103  LGKVLDGLGNPLEGEELMEGSPYALDSDPPDPMKRRRIKDVIPTGIKAIDGFITVGEGQR  162
            LG+V+DG+G PL+G EL E      D+ PP +M R+ I + + TGI+AID+  T GEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  163  IGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREVRDFIEKDLGEEGLKKSVIVCA  222
            +GIF+++GVGKST L+M+ + ++AD NV+ LIGERGREVR+FI+  L+EE  K+ VIV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  223  TSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTRFAMAQREIGLAIGEPPATKGY  282
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A REI+LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  283  TPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRSLAA  342
             P+VF+ LPRL+ER+GM++KGSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  343  KNHYPAIDILSSVSRLMSEIASKEHKDAAGMARDLLATYKNSEDLINIGAYVKGSNPKVD  402
            + HYPAID+L+++SR+ + ++S EH++ A++ R  LA Y++ E LI IG Y +G +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  403  MAIHYHESILSFLKQGIGE  421
             AI+    I +FL+Q+ +E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

282) B1NLA3E_18115 in NC_021171


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  314 bits (1177),  Expect = 8e-87, Method: Compositional matrix adjust.
 Identities = 195/396 (50%), Positives = 288/396 (73%), Gaps = 5/396 (1%)

Query  22   GKITQIIGLTIESQGPDVRIGELCSIFPAHSQTPIQAEVVGIRENKVLLMPLGEVRSIGP  81
            G+I ++ +  +++  P+V +GELC I P++      AEVVGI  +K LL P+    ++  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL----AEVVGINGSKALLSPFTSTAGLHC  78

Query  82   GCDVVASGKPLMVKAGHQLLGRVLDGLGQPLDGKPLPFGLGEVPAHAMPPNPLMRPRIQY  141
            G +V+A  +   V  G+ LLGRV+DG+G+PLDG+ LP  +     +AMPP +++R  I  
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAMPPPAMVRQPITQ  137

Query  142  PLGVGVRTIDGLLTMGKGQRFGIFAGSGVGKSTLLGMISRNTTAEVNVIALIGERGREVN  201
            PL  G+R+ID++ T G GQR GIF+++GVGKSTLL+M+     A+ NV+ LIGERGREV 
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  202  DFLEQNLGKEGLKKSVVIVATSDQPALIRIKGALTATSIAEYFRDQGKDVLLVMDSVTRF  261
            +F++  L+ E  K+ V++VATSD+PAL R+++ + AT+IAE+FRD+GK V+L+ DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  262  AMAQREIGLAIGEPPTTKGYTPSVFAMLPQLLERAGTGQKGSISAIYTVLVDGDDMNEPI  321
            A A REI+LA GE + +  Y P+VF+ LP+LLER+G G+KGSI+A+YTVLV+GDDMNEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  322  ADAVRGILDGHIVLNRAIAGKGIFPSIDVLNSVSRVMTEVTSDEHLNAASNLKKLLGAYN  381
            AD VR++LDGHIVL+R +A +G +P+IDVL ++SRV   VTS+EH + A+ L++ L+ Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  382  EAEDLINIGAYKKGSNREIDLAIRLKPQMDQFLRQG  417
            E E LI IG Y++G + + D AI   P++  FLRQ+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

283) fliI in NC_010516


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  314 bits (1176),  Expect = 9e-87, Method: Compositional matrix adjust.
 Identities = 190/379 (51%), Positives = 279/379 (74%), Gaps = 3/379 (0%)

Query  43   FVGEVCIIYNEKNQTIPCEVVGFKEENVILMPLGELIGIAPGCKVIPQGKPLSVICSENI  102
            F+GE+C I    + +   EVVG++  + +L P+    G+  G +V++  +   V  +E +
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  103  LGKVLDGLGNPLEGEELMEGSPYALDSDPPDPMKRRRIKDVIPTGIKAIDGFITVGEGQR  162
            LG+V+DG+G PL+G EL E      D+ PP +M R+ I + + TGI+AID+  T GEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  163  IGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREVRDFIEKDLGEEGLKKSVIVCA  222
            +GIF+++GVGKST L+M+ + ++AD NV+ LIGERGREVR+FI+  L+EE  K+ VIV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  223  TSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTRFAMAQREIGLAIGEPPATKGY  282
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A REI+LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  283  TPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRSLAA  342
             P+VF+ LPRL+ER+GM++KGSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  343  KNHYPAIDILSSVSRLMSEIASKEHKNAAGMARDLLATYKNSEDLINIGAYVKGSNPKVD  402
            + HYPAID+L+++SR+ + ++S EH++ A++ R  LA Y++ E LI IG Y +G +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  403  MSIHYHESILSFLKQGIGE  421
             +I+    I +FL+Q+ +E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

284) fliI in NC_015577


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  314 bits (1177),  Expect = 9e-87, Method: Compositional matrix adjust.
 Identities = 187/414 (46%), Positives = 294/414 (72%), Gaps = 10/414 (2%)

Query  41   GRISKVQGLLIESRGPQAIIGEICRIEAPKGAGLIRAEVVGLRGDTVQLMAYDETDGLEI  100
            GRI  V + L++++ P  ++GE+C I +  G  L  AEVVG+ G    L ++  T GL+ 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKP--GEEL--AEVVGINGSKALLSPFTSTAGLHC  78

Query  101  GARVVASGTRLEVAVSNKLLGRVLDPLGHPVDGKGNIE-SPVHYPALANPPDPLKRRRIT  159
            G +V+A   R +V+V++ LLGRV+D +G+P+DG+   E    +Y A+  PP ++ R+ IT
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPIT  136

Query  160  ERISTGVRAIDGMLAVGRGQRLGIFAGTGVGKSTLLGMIARNTNADVNVIALIGERGREV  219
            + + TG+RAID++ + G GQR+GIF++ GVGKSTLL+M+    +AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  220  NDFIENDLGPNGLARSVIVVTPSNSPPLARLRGAYTATAVAEYFRDQGLDVMLLFDSVTR  279
             +FI+  L+ +   R VIVV+ S+ P+L R+R+ + AT++AE+FRD+G  V+LL DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  280  FARAQREIGLATGEPPATRGFPPSMFDSMPKLLERCGTSDRGTITGFYTILVDGDDMDEP  339
            +ARA REI+LA+GE + +  +PP++F ++P+LLER G +++G+IT+FYT+LV+GDDM+EP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  340  VADTVRGILDGHIVLSRSLAQRYHYPAIDILNSISRLSTAVSGSETKKAVGIIRRLMADY  399
            +AD VR++LDGHIVLSR LA+R HYPAID+L ++SR+   V++ E ++  +I+RR +A Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  400  ADSEDLINVGAYKQGSNPKIDEAIAKRDALENFFIQNVDDKSS---IVDTLNAL  450
             + E LI +G Y++G +   D AI     +  F+ Q+ D+  +   +++ L+ +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

285) Theco_2102 in NC_019897


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  313 bits (1174),  Expect = 1e-86, Method: Compositional matrix adjust.
 Identities = 197/400 (50%), Positives = 289/400 (73%), Gaps = 7/400 (1%)

Query  25   GKVTQVIGLTVESEGPDASIGDVCLIYPAKSGKPIKAEVVGFRNNKVLLMPLGELHAVGP  84
            G++ +V +  +++  P+  +G++C I   K+G  + AEVVG+  +K LL P+    ++  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKALLSPFTSTAGLHC  78

Query  85   GCDVVSTCKPLTVPVGSELLGKVLDGLGQPLDGSRIPA-RMTHYSTHNVPSNPLFRPRVT  143
            G +V++  +   VPVG  LLG+V+DG+G+PLDG  +P     +Y +  +P+ ++ R  +T
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDA--MPPPAMVRQPIT  136

Query  144  EPLGIGVRAIDGLLTVGRGQRVGIFAGSGVGKSTLLGMVARNTSADVNVIALIGERGREV  203
            +PL  G+RAID++ T G GQRVGIF+++GVGKSTLL+M+     AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  204  LEFIERDLGPEGLARSVVVVATSDQPALIRIKGALIATTIAEYFRDRGLDVMLMMDSVTR  263
             EFI+  L+ E   R V+VVATSD+PAL R+++ ++ATTIAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  264  FAMAQREVGLAIGEPPATRGYTPSVFAMLPKLLERSGTGKTGSITAFYTVLVDGDDMNEP  323
            +A A RE++LA GE + +  Y P+VF+ LP+LLER+G G  GSITAFYTVLV+GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  324  IADAVRGILDGHIVLSRSLANKGHYPAIDILASVSRVMNDIVPAEQLEAANQFKRLLSIY  383
            +AD VR++LDGHIVLSR LA++GHYPAID+LA++SRV   + + E+ + A  ++R L++Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  384  RDSEDLINIGAYQRGSNAEIDRAIEYYDRIRSYAMQRTDE  423
            ++ E LI IG YQRG +++ D+AI+ Y  I ++  Q  DE
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

286) Rmar_0787 in NC_013501


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  313 bits (1172),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 204/407 (51%), Positives = 286/407 (71%), Gaps = 9/407 (2%)

Query  27   HFGKVQSVVGLLIEASELPAA-VGELCYIHEGQEPGARRIKAEVVGLRGNTTILMPLEET  85
            + G++Q V + L++A  LP+  +GELC I  G+E       AEVVG+ G+ ++L P+  T
Sbjct  21   RWGRIQDVSATLLNAW-LPGVFMGELCCIKPGEE------LAEVVGINGSKALLSPFTST  73

Query  86   RGLRAGYLVEPSALPLTIRVGEAMLGRVVDANARPIDGKGPLTVTDEQPVRNDPPPPLSR  145
             GL+ G  V +      + VGEA+LGRV+D+ +RP+DG+  L     +     PPP++ R
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVR  132

Query  146  RMIDTPLFTGIRAIDTFLTLGRGQRIGIFAGSGVGKSTLLGMIARRARADVNVIALIGER  205
            + I  PL TGIRAID+  T G GQR+GIF+++GVGKSTLL+M+   + AD NV+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  206  GREVQEFIADNLGPEGLKRSVVVAVTGDQAAMSRVKGASVAMAIAEYFRDRGLDVLLMMD  265
            GREV+EFI   L+ E  KR V+V  T+D++A+ RV++  VA +IAE+FRD G  V+L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  266  SITRVAMAQREIGLAVGEPPTTRGYTPSVFAMLPRLLERAGPGARGTITGIFTVLVDADD  325
            S+TR A A REI+LA GE + +  Y P+VF+ LPRLLER+G G +G+IT+++TVLV++DD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  326  MNDPIGDAVRGILDGHIVLSRRLAHANHFPAIDVLQSVSRVMPRVTTAEHRALVEEARRL  385
            MN+P++D VR++LDGHIVLSRRLA+  H+PAIDVL ++SRV P VT+ EHR L    RR 
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  386  LATYQEAEDLIRVGAYEMGTRPEIDRAILAHEALMAFLRQGVDEVAD  432
            LA YQE E LIR+G Y+ G   + D+AI +   + +FLRQ+ DEV +
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

287) hrcN in NC_014323


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  313 bits (1174),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 203/425 (48%), Positives = 303/425 (72%), Gaps = 14/425 (3%)

Query  35   GFSSQGRVAQVLGTLIEAHMPPVQIGELCNLFNPEQPGKTMLAEVVGFTDKASILSALSP  94
            G+   GR+ +V +TL++A +P V +GELC +    +PG   LAEVVG+ +  ++LS++++
Sbjct  18   GYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEE-LAEVVGINGSKALLSPFTS  72

Query  95   LEGVSTRTVIEPLRRSHSIEVGDHLFGCVLDGFGRWMFRAPAAQENVATWRAMSPVIRDA  154
              G+     + +LRR H + VG+ L+G V+DGFGR      + +     W+   ++   +
Sbjct  73   TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGR---PLDGRELPEVCWKDYDAM---P  126

Query  155  PPATSRPRIATPLPTGVRAIDGLLTMGMGQRIGVFAGPGCGKTTLMAAIARGCQAEAIVF  214
            PPA  R  I+ PL TG+RAID++ T G GQR+G+F++PG GK+TL+A +  + +A++ V+
Sbjct  127  PPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  215  GLIGERGRELNEFLDHELDAELIRKTVVVCATSDRTSMERSRAAFTATAIAEGFRDRGMK  274
             LIGERGRE+ EF+D  L  E  ++ V+V ATSDR ++ER RA F AT+IAE FRD G +
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  275  VLLLVDSLTRFARAQREIGLAAGEPPARGGFTPSVYTMLPRLIERAGGTPQGSITAMYTV  334
            V+LL DSLTR+ARA REI+LAAGE +  G + P+V++ LPRL+ER+G   +GSITA YTV
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTV  306

Query  335  LVDGESSSDPIGDEAKSLLDGHILLTRKLAEQGHYPAIDVLASISRVMSNVTSREHRRAA  394
            LV+G+  ++P++DE +SLLDGHI+L+R+LAE+GHYPAIDVLA++SRV + VTS+EHR+ A
Sbjct  307  LVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLA  366

Query  395  SRFRELLARYQEMELLIRLGEYKSGADPVADRAMELRPEQLSFLRQ---DTSGSADFQET  451
            + +R  LA YQE+ELLIR+GEY+ G D  +D+A++  P+  +FLRQ   +  G+  + E 
Sbjct  367  AILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEK  426

Query  452  LDTLM  456
            L+ ++
Sbjct  427  LHQIL  431

288) Clocl_1964 in NC_016627


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  313 bits (1172),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 193/411 (47%), Positives = 291/411 (71%), Gaps = 5/411 (1%)

Query  23   GKVSKIIGLTIESNGPEVNMGEICLIQSLRDKYEIKAEVVGFRENKVILMPLGDMAGIGP  82
            G++  + +  +++  P V MGE+C    ++   E+ AEVVG+  +K +L P+   AG+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELC---CIKPGEEL-AEVVGINGSKALLSPFTSTAGLHC  78

Query  83   GSSVVATGEYLSAAVGEKLIGRIIDGLGNPIDEKGEIETEGFYPVNNDPPHPLMRNRISE  142
            G  V+A       +VGE L+GR+IDG+G P+D + E+        +  PP +++R+ I++
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  143  PLPLGIKTIDGLLTIGKGQRVGIFAGSGVGKSTLIGMIARNTKADINVIALIGERGREVR  202
            PL  GI++ID++ T G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERGREVR
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  203  EFIEKDLKEEGLSRSVVIVATSDQPALVRLKAAFMATAVAEYFRDQGKDVLLLMDSLTRF  262
            EFI+  L EE   R V++VATSD+PAL R++A F+AT++AE+FRD+GK V+LL DSLTR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  263  AMAQREIGLAVGEPPVSRGYTPSVFSIMPKLLERAGNSERGSITGLYTVLVDGDDLTEPV  322
            A A REI+LA GE +VS  Y P+VFS +P+LLER+G +E+GSIT++YTVLV+GDD+ EP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  323  TDTARGILDGHIVLSRALANRNQYPAIDVLASVSRVMSDIIDDRHKEIANKIKKLMAIYR  382
            +D  R++LDGHIVLSR LA+R +YPAIDVLA++SRV + +  + H+++A  +++ +A+Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  383  DAEDLINIGAYVKGSNEKIDLAIEYNDKILEFIEQGTHEKYSFNEVIGMLE  433
            + E LI IG Y +G +   D AI+    I  F+ Q+ +E  + + +I  L+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

289) fliI in NC_013791


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  312 bits (1171),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 191/405 (48%), Positives = 281/405 (70%), Gaps = 9/405 (2%)

Query  16   YKWYGKVSRVVGLMIESIGPVASVGELCYILVGKQNQTRVRAEVVGFRDEYVLLMPLNGI  75
             +W G++  V + ++++  P   +GELC I  G +      AEVVG+ +   LL P+ + 
Sbjct  20   CRW-GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSPFTST  73

Query  76   QEIAPGSLVEATGSPLEIKVGSGLIGKVVDGCGELLDQQKLPK-GLTSFPTDNEPPNPLK  134
              +  G  V A     ++ VG +L+G+V+DG G  LD + LP      +  D  PP ++ 
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMV  131

Query  135  RPRIEHAMSLGVRAIDSLFTVGKGQRIGIFAGSGVGKSTLLAMLAKNSSADLNVIALIGE  194
            R  I +++  G+RAIDS+ T G GQR+GIF+++GVGKSTLLAML + + AD NV+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  195  RGREVKDFIERDLGAEGLSRTILVVATSDQPALMRIKGAMTATAIAEYFRNQGLDVNLMM  254
            RGREV++FI+  L+ E   R ++VVATSD+PAL R+++   AT+IAE+FR++G  V L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  255  DSVTRFAMAQREVGLATGEPPTTKGYTPSVFAMLPKLLERSGTDAKGSITAFYTVLVDGD  314
            DS+TR+A A RE++LA+GE + +  Y P+VF+ LP+LLER+G + KGSITAFYTVLV+GD
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  315  DMNEPIADAVRGILDGHLVLDRKLANKGQFPAINVLKSVSRVMSDLVNPIHKQAAERVRK  374
            DMNEP+AD VR++LDGH+VL R+LA++G++PAI+VL ++SRV + + +  H+Q A  +R+
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  375  LIATYEEAEDLINIGAYKRGSSKEIDEAIQAYPAIIEFLTQATDE  419
             +A Y+E E LI IG Y+RG   + D AI++YP I  FL Q+ DE
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

290) fliI in NC_017542


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  312 bits (1171),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 189/411 (46%), Positives = 294/411 (72%), Gaps = 7/411 (1%)

Query  23   GKVTQVIGLMVESEGPDASIGDVCYIYPGKAAKPLQAEVVGFRDNKVLLMPLGELQSIGP  82
            G++ +V + ++++  P+  +G++C I PG       AEVVG+ ++K LL P+    ++  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLHC  78

Query  83   GCDVVGTGKPLNVQVGSELLGKVLDGLGQPLDGSLIPSRMARYSTFN-IPSNPLNRPRVQ  141
            G +V++  +  +V VG  LLG+V+DG+G+PLDG  +P        ++ +P+ ++ R  + 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE--VCWKDYDAMPPPAMVRQPIT  136

Query  142  EPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTEADVNVIALIGERGREV  201
            +P+  G+RAID++ T G GQRVGIF+++GVGKSTL++M+    +AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  202  LDFIERDLGPEGLERSVVIVATSDQPALIRIKGALIATTIAEYFRDRGLNVMLMMDSVTR  261
             +FI+  L+ E   R V++VATSD+PAL R+++ ++ATTIAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  262  YAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTVLVDGDDMNEP  321
            YA A RE++LA GE +    Y P+VF++LP+LLER+G G  GSITAFYTVLV+GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  322  IADAVRGILDGHIVLNRGIANKGHFPAIDVLASISRVMKDIATRDQIDAAENIKRLMAIY  381
            +AD VR++LDGHIVL+R +A++GH+PAIDVLA++SRV   ++++++ + A  ++R +A+Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  KDSEDLINIGAYQQGSNAEIDESMERIRDIWDFTRQRTDEKAELDEVRERL  432
            ++ E LI IG YQ+G +++ D +++   DI  F RQ  DE    + + E+L
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

291) PPSC2_c2091 in NC_014622


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  312 bits (1171),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 189/411 (46%), Positives = 294/411 (72%), Gaps = 7/411 (1%)

Query  23   GKVTQVIGLMVESEGPDASIGDVCYIYPGKAAKPLQAEVVGFRDNKVLLMPLGELQSIGP  82
            G++ +V + ++++  P+  +G++C I PG       AEVVG+ ++K LL P+    ++  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLHC  78

Query  83   GCDVVGTGKPLNVQVGSELLGKVLDGLGQPLDGSLIPSRMARYSTFN-IPSNPLNRPRVQ  141
            G +V++  +  +V VG  LLG+V+DG+G+PLDG  +P        ++ +P+ ++ R  + 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE--VCWKDYDAMPPPAMVRQPIT  136

Query  142  EPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTEADVNVIALIGERGREV  201
            +P+  G+RAID++ T G GQRVGIF+++GVGKSTL++M+    +AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  202  LDFIERDLGPEGLERSVVIVATSDQPALIRIKGALIATTIAEYFRDRGLNVMLMMDSVTR  261
             +FI+  L+ E   R V++VATSD+PAL R+++ ++ATTIAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  262  YAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTVLVDGDDMNEP  321
            YA A RE++LA GE +    Y P+VF++LP+LLER+G G  GSITAFYTVLV+GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  322  IADAVRGILDGHIVLNRGIANKGHFPAIDVLASISRVMKDIATRDQIDAAENIKRLMAIY  381
            +AD VR++LDGHIVL+R +A++GH+PAIDVLA++SRV   ++++++ + A  ++R +A+Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  KDSEDLINIGAYQQGSNAEIDESMERIRDIWDFTRQRTDEKAELDEVRERL  432
            ++ E LI IG YQ+G +++ D +++   DI  F RQ  DE    + + E+L
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

292) Moth_0774 in NC_007644


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  312 bits (1169),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 208/401 (52%), Positives = 288/401 (72%), Gaps = 6/401 (1%)

Query  20   WRRGGKVTRVTGLTIEARGLKAAIGELCRIYNNGSGPIVAEVVGFREEVTLLMPLGELEG  79
            W   G++  V++  ++A+     +GELC I    +G  +AEVVG+    +LL P+    G
Sbjct  22   W---GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAG  75

Query  80   IGPGCRVIATGRGHYIRVGEELLGRVLDGLGRSLDGTVLVSGDPQpvnnrppnplsrrrI  139
            +  G +V+A  R H + VGE LLGRV+DG+GR+LDG  L     +  +  PP ++ R+ I
Sbjct  76   LHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPI  135

Query  140  KEVLATGVKAIDALLTCGCGQRVGIFAGSGVGKSTLLGMIARHSTADINVIALIGERGRE  199
             + L TG++AID++ TCG GQRVGIF+++GVGKSTLL+M+   + AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  200  VRDFIEGDLGPEGLARSIVVAATSDQPALVRIKGAFTATAIAEYFRDQGKNVLLMMDSLT  259
            VR+FI+  L+ E   R ++V ATSD+PAL R+++ F AT+IAE+FRD+GK V+L+ DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  260  RFAIAQREVGLAIGEPPTTRGYTPSVFASLPKLVERAGNGERGSITGLYTVLVEGDDMNE  319
            R+A A RE++LA GE + +  Y P+VF++LP+L+ER+G GE+GSIT++YTVLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  320  PVADTVRGLLDGHIVLSRRLAAANHYPAIDVLQSISRLMPEITSREQQEQAGKLRDLLAA  379
            P+AD VR+LLDGHIVLSRRLA   HYPAIDVL ++SR+ P +TS+E+++ A+ LR  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YQEAADLIEIGAYQAGSNPRVDAALKYHEAIQSFLRQGKDE  420
            YQE   LI IG YQ G +   D A+     I +FLRQ+KDE
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

293) Desdi_2869 in NC_019903


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  312 bits (1170),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 199/414 (49%), Positives = 296/414 (72%), Gaps = 7/414 (1%)

Query  21   GRVAKIVGLMIESDGPRASVGEYCKIHTQHGQEIPAEVVGFRNSTTLLMPLAELEGISPG  80
            GR+  + + ++++  P   +GE C I  + G+E+ AEVVG+  S +LL P++   G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   DRVIPQQHKLKVGVGSALLGRIIDGLGQPLDGRPL--FTSRDYPLQNAPPNAFQRPRIRD  138
            ++V++ +++ +V VG ALLGR+IDG+G+PLDGR L     +DY  +  PP A  R  I +
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQ  137

Query  139  HLSVGVRTVDglltlgrgqrlgIFAGSGVGKSTLLGMMARNTTASVNVIALVGERGRELR  198
             L  G+R++D++ T G GQR+GIF+++GVGKSTLL+M+     A  NV+ L+GERGRE+R
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  199  DFIEKDLGEAGLERSVLIVATSDQPALVRLKAAFTATAIAEYFRDQGQDVLLMMDSVTRF  258
            +FI+  L+E    R V++VATSD+PAL R++A F AT+IAE+FRD+G+ V+L+ DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  259  AMAQREVGLTAGEPPATRGYPPSVFALLPKLLERSGMSESGSITGIYTVLVDGDDHNEPI  318
            A A RE++L+AGE + +  YPP+VF+ LP+LLER+GM+E GSIT++YTVLV+GDD NEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  319  ADSVRGILDGHIVLTRELAMQNHYPAIDTLQSVSRVMNDIISPEHKDLAGKFREHLAVYN  378
            AD VR++LDGHIVL+R LA + HYPAID L ++SRV   + S EH++LA+ +R +LA+Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  379  DAKDLIDIGAYVTGSNPRIDDAIQHIEGINRFLRQDVEEMATFDEMIEQLKLAL  432
            +   LI IG Y  G +   D AI+   +I  FLRQ  +E+   + +IE+L   L
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

294) Aaci_1392 in NC_013205


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  312 bits (1170),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 197/415 (48%), Positives = 296/415 (72%), Gaps = 4/415 (0%)

Query  25   GRVMRVIGHMLEVAGPTASLGELCALGRDASEGLGEVIGFHEGRLYVVPLGPLPEVSPGT  84
            GR+  V + +L+   P   +GELC +   ++E L+EV+G++ ++  + P+ + + +  G 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  85   PVRFLERQFRIRCGPGLVGRVLNGLGEPIDDRGPLEGPLVWRTVDAPAISPLRRGRISSP  144
             V  L R+ ++  G +L+GRV++G+G P+D+R   E  + W+  DA + +++ R  I+ P
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE--VCWKDYDAMPPPAMVRQPITQP  138

Query  145  YATGVRAIDALLTIGRGQRVGLFAGSGVGKSTLLSMMARGGRADVHVIALVGERGREVRE  204
              TG+RAID++ T G GQRVG+F+++GVGKSTLL+M+  +  AD +V+ L+GERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  205  FLEDDLGEEGMRRSVVIVATSDESAYVRSKAAFVATAIAEHFRDEGMHVTLMMDSLTRFA  264
            F++  L+EE  +R V++VATSD +A  R +A FVAT+IAE FRD+G +V L+ DSLTR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  265  MAEREVGLAMGEPPSSRGYTPSVFAKLPVLLERAGPGPVGAITAVYTVLVEGDDLNDPIA  324
             A RE++LA GE + S  Y P+VF+ LP LLER+G G  G+ITA YTVLVEGDD+N+P+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  325  DAVRGILDGHIVLSRSLANRGQFPAIDVLQSLSRLFPSIADEDHRRAAERVREWMARYGE  384
            D VR++LDGHIVLSR LA+RG++PAIDVL +LSR+FP ++ ++HR+ A  +R ++A Y E
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  385  IEDLFRIGAYRQGTDPAVDEAIQRMPEILEFLRQKKGETVAFEEAITQLLNLAGD  439
            +E L+RIG Y++G D   D AI+  P+I  FLRQ K+E  + E  I +L ++  +
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

295) Tmel_1269 in NC_009616


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  312 bits (1170),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 198/414 (48%), Positives = 289/414 (70%), Gaps = 6/414 (1%)

Query  7    LKKRLS-EYNP---YQKIGAVSKIVGLTIESKGPDAFLGELCKIITEYKKSYAEVVGFNE  62
            L +RL   Y P   Y + G +  + +  +++  P+ F+GELC I        AEVVG+N 
Sbjct  5    LMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPG--EELAEVVGING  62

Query  63   NGVILMPLEDISGLKKGCQVIKTNQYVSIPVSEELLGRVVDALGRPLDGKKILSKEKIPI  122
            +  +L P+   +GL  G QV+   +   +PV+E LLGRV+D++GRPLDG+ +        
Sbjct  63   SKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY  122

Query  123  VREAPNPLIRKRITTPISVGIRAIDGFLTLGYGQRIGIFAGSGVGKSTLLGMIARNTSAD  182
               +P +++R+ IT P+  GIRAID+  T G GQR+GIF+++GVGKSTLL+M+     AD
Sbjct  123  DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD  182

Query  183  INVISLIGERGREVREFIEKDLKKEGLKRSIVVVSTSDQPALLRVKALLTATSIAEYFRD  242
             NV+ LIGERGREVREFI+  L  E  KR ++VV+TSD+PAL RV+AL+ AT+IAE+FRD
Sbjct  183  SNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRD  242

Query  243  KGYNVLLMVDSLTRWAMAQREVGLATGEPPTTRGYPPSVFAGLPKILERAGNSDKGSITG  302
            +G  V+L+ DSLTR A A RE++LA+GE + +  YPP+VF++LP++LER+G ++KGSIT+
Sbjct  243  NGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITA  302

Query  303  IYTVLVEADDFNEPISDTVRGIVDGHIILSRKLAESAHYPAIDVLMSVSRLMNDIVTKEH  362
            +YTVLVE+DD NEP++D VR+++DGHI+LSR+LAE +HYPAIDVL ++SR+   + + EH
Sbjct  303  FYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEH  362

Query  363  KISAMKLKDLIATYYDAKDLIDVGAYKKGTNPKIDKSIELIDEINKFLKQSIDE  416
            +  A  L+  +A Y +   LI +G Y++G +   DK+I+   +I  FL+QS DE
Sbjct  363  RQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

296) fliI in NC_014387


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  312 bits (1169),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 194/434 (45%), Positives = 301/434 (70%), Gaps = 24/434 (5%)

Query  20   YRMSGKVVNVIGLTIESAGPDAKLGDICLIYPKKKDNETMSDSKGRPAMAEVVGFKDNHV  79
            Y   G++ +V +  +++  P+  +G++C I   K ++E          +AEVVG++++  
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEE----------LAEVVGINGSKA  65

Query  80   QLMPYENTSGIGNGSIVENTDSPLRVNVGEGLLGQTLDGLGR-IDGTSYGKGVMLEDGVA  138
             L P+ +T+G+  G  V       +V VGE+LLG+ +DG+GR +DG        L +   
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE------LPEVCW  119

Query  139  YSVENQPPDPMTRDPISEVLSLGVKAVDGLLTVGKGQRIGIFAGSGVGKSTLLGMFARNT  198
               +  PP +M R+PI++ L  G++A+D++ T G GQR+GIF+++GVGKSTLL+M+    
Sbjct  120  KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAP  179

Query  199  QADINVIALIGERGREVREFIERDLGEEGMKRSIVVCATSDKPALERLKAAKTATSIAEY  258
            +AD NV+ LIGERGREVREFI+  L+EE  KR ++V ATSD+PALER++A   AT+IAE+
Sbjct  180  DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEF  239

Query  259  FRDKGKDVLLMMDSLTRFSMAQREIGLASGEPPVSRGYPPSVYAEMPKLLERAGRSRKGS  318
            FRD+GK V+L+ DSLTR++ A REI+LA+GE +VS  YPP+V++ +P+LLER+G + KGS
Sbjct  240  FRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGS  299

Query  319  ITGLYTVLVDGDDMNEPITDTARGILDGHIVLNRKLAQKNHYPAIDVLASISRCMSAIAD  378
            IT++YTVLV+GDDMNEP++D  R++LDGHIVL+R+LA++ HYPAIDVLA++SR  + ++ 
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  379  PEHKKAAGKLKNVLATYNDAEDLINIGAYRSGANKNIDYAVSKIEQVNAFLTQETDEKFS  438
             EH++ A+ L+  LA Y++ E LI IG Y+ G + + D A+    ++ +FL Q  DE  +
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  439  FEEIRDMLIDMFND  452
                 ++LI+ +++
Sbjct  420  ----PELLIEKLHQ  429

297) bscN in NC_019382


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  312 bits (1168),  Expect = 4e-86, Method: Compositional matrix adjust.
 Identities = 211/401 (53%), Positives = 305/401 (77%), Gaps = 7/401 (1%)

Query  25   GRVVQVVGTIIKAVVPMVKIGEVCLLRNPGEDFEMHGEVVGFVRDAALLTPIGDMYGISS  84
            GR+ +V +T+++A +P V +GE+C ++ PGE++   +EVVG+    ALL+P+    G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  85   ATEVIPTGRTHMvpvgpgllgrvldglgrpldAAESGPLHAHKFYPVFADAPDPLTRRII  144
            + +V++  R H VPVG +LLGRV+DG+GRPLD+ E   +    + ++   +P ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPI  135

Query  145  HAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGRE  204
              PL  G+R +D++ TCGEGQR+GIF+A+G GKSTLL+ML +++  D  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  205  VREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSVT  264
            VREF++  L+ E R++ VIV ATSD++++ER +A +VAT+IAE+FRD+G+RV++L DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  265  RFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMNE  324
            R+ARA REI+LAAGE +    YPP+VF++LP+L+ER+GM + GSITA+YTVLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  325  PVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMAK  384
            P+ADE RS+LDGHIVLSR+L+   HYPA+DVLA+ SRV   V S  H+ LA+ +R  +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  385  YQDVELLVKIGEYKQGADASTDEAIQKIGQINAFLRQQTDE  425
            YQ+VELL++IGEY++G D+ TD AI+   +I +FLRQ  DE
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

298) HPL003_18150 in NC_016641


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  312 bits (1169),  Expect = 4e-86, Method: Compositional matrix adjust.
 Identities = 190/411 (47%), Positives = 294/411 (72%), Gaps = 7/411 (1%)

Query  23   GKVTQVIGLMVESEGPDASIGDVCYIYPGKTAKPLQAEVVGFRDNKVLLMPLGELQSIGP  82
            G++ +V + ++++  P+  +G++C I PG       AEVVG+ ++K LL P+    ++  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLHC  78

Query  83   GCDVVGTGKPLNVQVGSELLGKVLDGLGQPLDGSLIPSRMARYSTFN-IPSNPLSRPRVQ  141
            G +V++  +  +V VG  LLG+V+DG+G+PLDG  +P        ++ +P+ ++ R  + 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE--VCWKDYDAMPPPAMVRQPIT  136

Query  142  EPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTEADVNVIALIGERGREV  201
            +P+  G+RAID++ T G GQRVGIF+++GVGKSTL++M+    +AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  202  LDFIERDLGPEGLERSVVIVATSDQPALIRIKGALIATTIAEYFRDRGLNVMLMMDSVTR  261
             +FI+  L+ E   R V++VATSD+PAL R+++ ++ATTIAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  262  YAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTVLVDGDDMNEP  321
            YA A RE++LA GE +    Y P+VF++LP+LLER+G G  GSITAFYTVLV+GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  322  IADAVRGILDGHIVLNRGIANKGHFPAIDVLASISRVMKDIAPRDQIDAAENIKRLMAVY  381
            +AD VR++LDGHIVL+R +A++GH+PAIDVLA++SRV   ++++++ + A  ++R +A+Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  KDSEDLINIGAYQQGSNAEIDESMDRIRDIWDFTRQRTDEKVELDEVRERL  432
            ++ E LI IG YQ+G +++ D ++D   DI  F RQ  DE    + + E+L
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

299) PPE_01886 in NC_014483


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  312 bits (1168),  Expect = 4e-86, Method: Compositional matrix adjust.
 Identities = 189/411 (46%), Positives = 294/411 (72%), Gaps = 7/411 (1%)

Query  23   GKVTQVIGLMVESEGPDASIGDVCYIYPGKTAKPLQAEVVGFRDNKVLLMPLGELQSIGP  82
            G++ +V + ++++  P+  +G++C I PG       AEVVG+ ++K LL P+    ++  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLHC  78

Query  83   GCDVVGTGKPLNVQVGSELLGKVLDGLGQPLDGSLIPSRMARYSTFN-IPSNPLNRPRVQ  141
            G +V++  +  +V VG  LLG+V+DG+G+PLDG  +P        ++ +P+ ++ R  + 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE--VCWKDYDAMPPPAMVRQPIT  136

Query  142  EPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTEADVNVIALIGERGREV  201
            +P+  G+RAID++ T G GQRVGIF+++GVGKSTL++M+    +AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  202  LDFIERDLGPEGLERSVVIVATSDQPALIRIKGALIATTIAEYFRDRGLNVMLMMDSVTR  261
             +FI+  L+ E   R V++VATSD+PAL R+++ ++ATTIAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  262  YAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTVLVDGDDMNEP  321
            YA A RE++LA GE +    Y P+VF++LP+LLER+G G  GSITAFYTVLV+GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  322  IADAVRGILDGHIVLNRGIANKGHFPAIDVLASISRVMKDIAPRDQIDAAENIKRLMAVY  381
            +AD VR++LDGHIVL+R +A++GH+PAIDVLA++SRV   ++++++ + A  ++R +A+Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  KDSEDLINIGAYQQGSNAEIDESMERIRDIWDFTRQRTDEKAELDEVRERL  432
            ++ E LI IG YQ+G +++ D +++   DI  F RQ  DE    + + E+L
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

300) Acel_0844 in NC_008578


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1167),  Expect = 5e-86, Method: Compositional matrix adjust.
 Identities = 194/381 (51%), Positives = 273/381 (72%), Gaps = 1/381 (0%)

Query  59   LAEVVALHDESLACMPLGDVSGVAVGALVTPTGGPLTVPVGDALLGRVLDGLGRPIDGKG  118
            LAEVV++++      P+   +G+  G  V +      VPVG+ALLGRV+DG+GRP+DG+ 
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-  112

Query  119  ELRDTIRVGLDATPPHPLRRTRISEQLSLGVRVLDTMTPCGRGQRLGIFAGSGVGKSSLL  178
            EL +  + + DA PP ++ R  I++ L  G+R +D+++ CG GQR+GIF+++GVGKS+LL
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  179  SMIARGTEADVSVIALVGERGREVREFLENDLGEEGLARSVVVVATSDEPALLRLRAAFV  238
            +M+  + +AD +V+ L+GERGREVREF++  L+EE   R V+VVATSD PAL R+RA FV
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  239  ATRIAEWFRDLGRHVILMMDSITRFAMAQREIGLSVGEPAATRGYPPSVFALLPKLLERA  298
            AT IAE FRD G++V+L+ DS+TR+A A REI+L+ GE A +  YPP+VF+ LP+LLER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  299  GAGEHGSITGLYTVLVEGDDMNEPIADTARSILDGHVTLSRRLATSGHYPAVDVLESISR  358
            G GE GSIT++YTVLVEGDDMNEP+AD  RS+LDGH+ LSRRLA  GHYPA+DVL ++SR
Sbjct  293  GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  359  LTGAITTAQQRDDATFLRRILAAHRDARELIDIGAYVPGSNPDVDTALRLQPRITDFLRQ  418
            +   +T+ ++R+ A++LRR LA  ++   LI IG Y  G + D D A+   P I  FLRQ
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  419  DIRAVTPADQAWRWLHDIVTA  439
                V  ++     LH+I+T 
Sbjct  413  SKDEVCGPELLIEKLHQILTE  433

301) A11Q_2143 in NC_020813


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1167),  Expect = 5e-86, Method: Compositional matrix adjust.
 Identities = 192/420 (46%), Positives = 288/420 (69%), Gaps = 12/420 (2%)

Query  21   SGKVTEVTGLIIKGYIPGVSVGSICEIQTAASDKPVLAEVVGFRDRHVLMMSLGSQQGIS  80
             G++ +V++ ++++ +PGV +G +C I+ +      LAEVVG+ +   L+ ++ S  G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  81   MGSKITLSKSIATVKVSEELLGRVVDGMGKALDNGPEIEITNEVSL--YGEVVNP-LMRA  137
             G ++   +    V V+E LLGRV+DG G++LD G E+    EV    Y+ +  P ++R 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GREL---PEVCWKDYDAMPPPAMVRQ  133

Query  138  PIRESLDVGVRAINAAITAGRGQRVAIMAGSGVGKSVLMGMMAKQTEADVNVIALIGERG  197
            PI ++L  G+RAI++  T G GQRV+I +++GVGKS L++M+ +  +AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  198  REVREFIENELGEEGMRKTVVVCVTSDQSPLLRMRGAFVATAIAEYFAHTGKSVLLVMDS  257
            REVREFI+  L+EE  ++ V+V  TSD+++L R+R+ FVAT+IAE+F + GK V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  258  VTRFAMAMREIGLSIGEPPSTKGYTPSVFSTLPKLLERAGNFEGSGSITGFYTTLVEGDD  317
            +TR+A A REI+L+ GE + +  Y P+VFS+LP+LLER+G     GSIT+FYT LVEGDD
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDD  312

Query  318  MNDPIGDAVRSIVDGHIVLSRAIAHKGHFPAIDVLQSASRVMKAVTDPDHVRMAQKLREI  377
            MN+P++D VRS++DGHIVLSR +A++GH+PAIDVL + SRV   VT  +H ++A  LR  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  378  LATYRDAEDLINVGAYKAGANPKIDKAIKLIDPINEFLRQRTEDHSNMEQCMRKLSQIVA  437
            LA Y++ E LI +G Y+ G +   DKAI     I  FLRQ  ++    E  + KL QI++
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

302) Dtox_0691 in NC_013216


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1165),  Expect = 6e-86, Method: Compositional matrix adjust.
 Identities = 197/380 (52%), Positives = 275/380 (73%), Gaps = 5/380 (1%)

Query  46   IGEVCHVIVPGRSRPIVAEVVGFMQGASILMPLGELQGIQPGNQVVPTGRNLTVEVSDDM  105
            +GE+C  I PG     +AEVVG+  + ++L P+    G++ G+QV++  R   V V++ +
Sbjct  42   MGELC-CIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  106  LGSVLDGLGRQIGGKTAGEQKTKFPVDNQPPNPLTRQRIAQVLPTGVRAIDSVLTCGQGQ  165
            LG V+DG+GR ++G+   E   K   D  PP ++ RQ I+Q L TG+RAIDSV TCG+GQ
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  166  RIGIFAGSGVGKSTLLGMIAKYGKADVNVIGLIGERGREVKDFIETDLGEEGLSRSVVVA  225
            R+GIF+++GVGKSTLL+M+ +   AD NV+ LIGERGREV++FI+  L+EE   R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  226  ATSDQPALIRLKGAMVATALAEYFRNKGLNVMLLMDSVTRFAMAQREVGLAVGEPPATKG  285
            ATSD+PAL R+++  VAT++AE+FR++G  V+LL DS+TR+A A RE++LA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  286  YTPSVFALLPKLLERSGMSVEGSITAFYTVLVDGDDMNEPIADAVRGILDGHIVLTRRLA  345
            Y P+VF+ LP+LLER+GM+  GSITAFYTVLV+GDDMNEP+AD VR++LDGHIVL+RRLA
Sbjct  277  YPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  346  AKNHYPAIDVLSSVSRVMSDIVNPEHlsraarlrellsTYLQAEDLISIGAYNFGANPKI  405
             + HYPAIDVL+++SRV + + + EH   AA LR  L+ Y + E LI IG Y+ G +   
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  406  DDAIRHYDNIIEFLRQHPEE  425
            D AI  Y +I  FLRQ  +E
Sbjct  397  DKAIDTYPDICTFLRQSKDE  416

303) H04402_02754 in NC_017299


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1166),  Expect = 6e-86, Method: Compositional matrix adjust.
 Identities = 191/379 (51%), Positives = 278/379 (74%), Gaps = 3/379 (0%)

Query  43   FVGEVCIIYNEKNQTIPCEVVGFKEENVILMPLGELIGIAPGCKVIPQGKPLSVICSENI  102
            F+GE+C I    + +   EVVG++  + +L P+    G+  G +V++  +   V  +E +
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  103  LGKVLDGLGNPLEGEELMEGSPYALDSDPPDPMKRRRIKDVIPTGIKAIDGFITVGEGQR  162
            LG+V+DG+G PL+G EL E      D+ PP +M R+ I + + TGI+AID+  T GEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  163  IGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREVRDFIEKDLGEEGLKKSVIVCA  222
            +GIF+++GVGKST L+M+ + ++AD NV+ LIGERGREVR+FI+  L+EE  K+ VIV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  223  TSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTRFAMAQREIGLAIGEPPATKGY  282
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A REI+LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  283  TPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRSLAA  342
             P+VF+ LPRL+ER+GM++KGSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  343  KNHYPAIDVLSSVSRLMSEIASKEHKDAAGMARDLLATYKNSEDLINIGAYVKRSNPKVD  402
            + HYPAIDVL+++SR+ + ++S EH++ A++ R  LA Y++ E LI IG Y +  +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  403  MAIHYHESILSFLKQGIGE  421
             AI+    I +FL+Q+ +E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

304) fliI in NC_015714


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1166),  Expect = 6e-86, Method: Compositional matrix adjust.
 Identities = 197/401 (50%), Positives = 292/401 (73%), Gaps = 9/401 (2%)

Query  23   GHVTAVRGLLIESRGPHAVVGELCRVVLRRQGRPLIAEVVGLAGSTVKLMSYTDTHgvev  82
            G++  V + L++++ P   +GELC +   + G  L AEVVG+ GS   L ++T T G++ 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKALLSPFTSTAGLHC  78

Query  83   gcavvaegaaLSVPVGDALLGRVLNAFGKAIDGKG--EIYAPLRSEVLRASSNPMERLPI  140
            G  V+A      VPVG+ALLGRV+++FG+++DG+   E+    + +    ++ +M R PI
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPI  135

Query  141  TRQMVTGVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIARNTDADVSVIALIGERGRE  200
            T+ ++TG+R +DS+ + G GQR+GIFS++GVGKSTL++M+    DAD +V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VMDFVAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEYFRDQGKQVLLLFDSLT  260
            V +F+   L+ E  KR VIV ATSD ++L RVR+ + AT+IAE+FRD+GK+V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSFSMGSVTAFYTVLVDGDDLDE  320
            R+A+A REI+LA+GE + +  Y PGVF +LP+LLER+G    GS+TAFYTVLV+GDD++E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  321  PISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGADMKEAVRIVRRALAV  380
            P++D VR+++DGHIVLSR LA+R HYPAIDVL ++SR+   V + + ++   I+RR LA+
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  381  YAEVEDLVRVGAYQQGSDAELDRAIAMRAEIERFLTQGSQE  421
            Y EVE L+R+G YQ+G D++ D+AI   ++I  FL Q+ +E
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

305) fliI in NC_017167


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1166),  Expect = 6e-86, Method: Compositional matrix adjust.
 Identities = 198/420 (48%), Positives = 295/420 (71%), Gaps = 5/420 (1%)

Query  13   FVRRAGRVMRVIGHTLEVAGPTASLGELCALGRDASEGLGEVIGFHEGRLYVVPLGPLPD  72
            + R+ GR+  V +  L+   P   +GELC +   ++E L+EV+G++ ++  + P+ + ++
Sbjct  19   YCRW-GRIQDVSATLLNAWLPGVFMGELCCI--KPGEELAEVVGINGSKALLSPFTSTAG  75

Query  73   VSPGTPVRFLERQFRIRCGPGLVGRVLNGLGEPIDDRGPLEGPLVWRTVDAPAISPLRRG  132
            +  G  V  L R+ ++  G +L+GRV++G+G P+D+R   E  + W+  DA + +++ R 
Sbjct  76   LHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE--VCWKDYDAMPPPAMVRQ  133

Query  133  RIRSPYATGVRAIDALLTIGRGQRVGLFAGSGVGKSTLLSMMARGGRADVHVIALVGERG  192
             I  P  TG+RAID++ T G GQRVG+F+++GVGKSTLL+M+  +  AD +V+ L+GERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  193  REVREFLEDDLGEEGMRRSVVIVSTSDEPAYVRSKAAFVATAIAEHFRDEGMHVTLMMDS  252
            REVREF++  L+EE  +R V++V+TSD PA  R +A FVAT+IAE FRD+G +V L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  253  LTRFAMAEREVGLAMGEPPSSRGYTPSVFAKLPVLLERTGPGPVGAITAVYTVLVEGDDL  312
            LTR+A A RE++LA GE + S  Y P+VF+ LP LLERTG G  G+ITA YTVLVEGDD+
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  313  NDPIADAVRGILDGHIVLSRSLANRGQFPAIDVLQSLSRLFPSIAKDDHRRAAERVREWM  372
            N+P+AD VR++LDGHIVLSR LA+RG++PAIDVL +LSR+FP ++ ++HR+ A  +R ++
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  373  ARYGEIEDLLRIGAYREGTDPAVDEAIRRMPEILEFLRQQKKETVAFEQAVAQLLNLAGD  432
            A Y E+E L+RIG Y+ G D   D AI   P+I  FLRQ K E  + E  + +L ++  +
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

306) fliI in NC_012491


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1165),  Expect = 7e-86, Method: Compositional matrix adjust.
 Identities = 193/412 (47%), Positives = 289/412 (71%), Gaps = 10/412 (2%)

Query  23   GKVTQVVGLTIESQGPEVKLGEICHLYPANTKEPIIAEVVGFRENKVLLMPLGELTEIGP  82
            G++ +V +  +++  P V +GE+C + P++     +AEVVG+  +K LL P+   + +  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLHC  78

Query  83   GCDVVATGRSLDVKVGPEILGSILDGLGRPYQG-SLP-FGLTSYPTNNMPPNPILRPRIQ  140
            G +V+A  R  +V VG  +LG ++DG+GRP +G  LP      Y  + MPP +++R  I 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPIT  136

Query  141  EPLSVGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTTADINVIGLIGERGREV  200
            +PL  G+RAID++ T G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  201  MEFIERDLGEEGLKRSVVVVATSDQPAMIRIKGAMIATSIAEYFRDRGMNVMLMMDSVTR  260
             EFI+  L+EE  KR V+VVATSD+PA+ R+++  +AT+IAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  261  FAMAQREVGLAIGEPPATRGYTPSVFAMLPKLMERAGTADKGSITAFYTVLVDSDDMNDP  320
            +A A RE++LA GE + +  Y P+VF+ LP+L+ER+G ++KGSITAFYTVLV++DDMN+P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  321  IADAVRGILDGHIVLDRKIAHKGHFPAIDVMASVSRVMNEIVDSNHLDAARQLKKHLATF  380
            +AD VR++LDGHIVL R++A++GH+PAIDV+A++SRV   +   +H + A  L+++LA +
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  381  REAEDLINIGAYKPGSNREIDAAI-RYRDIISGFTAQGTHEPSTLQGAIQAL  431
            +E E LI IG Y+ G + + D AI  Y D I  F  Q+ +E    +  I+ L
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPD-ICTFLRQSKDEVCGPELLIEKL  427

307) fliI in NC_011961


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1164),  Expect = 8e-86, Method: Compositional matrix adjust.
 Identities = 196/382 (52%), Positives = 277/382 (73%), Gaps = 8/382 (2%)

Query  43   IGDLCHIFPSLSEEGRLAAEVVGFHDERLILVPLAELRGVRHGSRVVRAPEALHVPVGPE  102
            +G+LC I P     G   AEVVG+++ + +L P++   G++ G +V+      +VPVG  
Sbjct  42   MGELCCIKP-----GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEA  96

Query  103  LLGRVIDGLGRPIDGKG-PLRCRRRLRIGGAPPSPLQRAPIRDILPTGVRTIDALLTCGR  161
            LLGRVIDG+GRP+DG+  P  C++    ++ PP+++ R PI + L TG+R+ID++ TCG 
Sbjct  97   LLGRVIDGFGRPLDGRELPEVCWKD--YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGE  154

Query  162  GQRLGIFAGSGVGKSTLLGMISRNAVCDVRVIALIGERGREVQEFIERDLGPAGLEQAVV  221
            GQR+GIF+++GVGKSTLL+M+   +  D  V+ LIGERGREV+EFI+  L+     + V+
Sbjct  155  GQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVI  214

Query  222  VVSTSDQPALMRIKAAWTATLIAEYFRDRGMSVVLMMDSVTRLAMAQREVGLAAGEPPAT  281
            VV+TSD+PAL R++A   AT IAE+FRD G  VVL+ DS+TR A A RE++LAAGE + +
Sbjct  215  VVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVS  274

Query  282  RGYPPSVFALLPRLLERAGNAEQGSITAFYTVLVEGDDLNEPISDTVRGILDGHIVLART  341
              YPP+VF+ LPRLLER+G +E+GSITAFYTVLVEGDD+NEP++D VR++LDGHIVL+R 
Sbjct  275  GEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  342  LADRGHYPAIDVLASVSRLMPSLVTPDHRALASEVRELLAAYESARDLIDIGAYVHGTNP  401
            LA+RGHYPAIDVLA++SR+ P + + +HR LA+ +R  LA Y+    LI IG Y +G + 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  402  TVDRALSLMPEIRRFLQQKPEE  423
              D+A+   P+I  FL+Q  +E
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

308) Rhom172_2094 in NC_015966


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1164),  Expect = 8e-86, Method: Compositional matrix adjust.
 Identities = 203/407 (50%), Positives = 284/407 (70%), Gaps = 9/407 (2%)

Query  27   HFGKVQSVVGLLIEVSELPAA-VGELCYIHEGQEPGARRIKAEVVGLRGHTTILMPLEET  85
            + G++Q V + L++   LP+  +GELC I  G+E       AEVVG+ G  ++L P+  T
Sbjct  21   RWGRIQDVSATLLNAW-LPGVFMGELCCIKPGEE------LAEVVGINGSKALLSPFTST  73

Query  86   RGLRAGYLVEPSALPLTIRVGEAMLGRVVDANARPIDGKGPLTVTDEQPVRNDPPPPLSR  145
             GL+ G  V +      + VGEA+LGRV+D+ +RP+DG+  L     +     PPP++ R
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVR  132

Query  146  RMIDTPLFTGIRAIDTFLTLGRGQRIGIFAGSGVGKSTLLGMIARRARADVNVIALIGER  205
            + I  PL TGIRAID+  T G GQR+GIF+++GVGKSTLL+M+   + AD NV+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  206  GREVQEFIADNLGPEGLKRSVVVAVTGDQAAMSRVKGASVAMAIAEYFRDRGLDVLLMMD  265
            GREV+EFI   L+ E  KR V+V  T+D++A+ RV++  VA +IAE+FRD G  V+L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  266  SITRVAMAQREIGLAVGEPPTTRGYTPSVFAMLPRLLERAGPGARGTITGIFTVLVDADD  325
            S+TR A A REI+LA GE + +  Y P+VF+ LPRLLER+G G +G+IT+++TVLV++DD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  326  MNDPIGDAVRGILDGHIVLSRRLAHANHFPAIDVLQSVSRVMPRVTTAEHRALVEEARRL  385
            MN+P++D VR++LDGHIVLSRRLA+  H+PAIDVL ++SRV P VT+ EHR L    RR 
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  386  LATYQEAEDLIRVGAYEMGTRPEIDRAILAHEALMAFLRQGVDEVAD  432
            LA YQE E LIR+G Y+ G   + D+AI +   + +FLRQ+ DEV +
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

309) Clopa_2934 in NC_021182


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1164),  Expect = 8e-86, Method: Compositional matrix adjust.
 Identities = 190/395 (49%), Positives = 281/395 (72%), Gaps = 3/395 (0%)

Query  41   FVGEVCKIYNEKNTAVECEVVGFREKNIILMPLGELIGIAPGCRVVPTGKPLNVKCSEEL  100
            F+GE+C I    + A   EVVG+   + +L P+    G+  G +V++  +  +V  +E L
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  101  FGRVLDGLGKPLDSVKIDRGSYYKLDSDPPDPLKRRRIKDVMSTGVRAIDGFLTCGEGQR  160
            +GRV+DG+G+PLD+  +        D+ PP ++ R+ I + + TG+RAID+  TCGEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  161  VGIFAGSGVGKSTTLGMIAREAKADVNIIALIGERGREVLDFIEKDLGEEGMKKSIIVCA  220
            VGIF+++GVGKST L+M+   + AD N++ LIGERGREV +FI+  L+EE  K+ +IV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  221  TSDRPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTRFAMAQREIGLAIGEPPATKGY  280
            TSDRPAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A REI+LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  281  TPSVFAMLPRLMERSGMSDKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRDLAA  340
             P+VF+ LPRL+ER+GM++KGSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  341  KNHYPAIDTLKSISRLMSEIADNDHKQAASAARDLLATYHDSEDLINLGAYVRGSNKKID  400
            + HYPAID L ++SR+ + ++ ++H+Q A+  R  LA Y++ E LI +G Y RG +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  401  IAIHYHDHIVNYLKQGINEKSNFEDSRNKLVEMFS  435
             AI+   +I  +L+Q+ +E    E   +KL ++++
Sbjct  398  KAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

310) bscN in NC_018829


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1164),  Expect = 9e-86, Method: Compositional matrix adjust.
 Identities = 211/401 (53%), Positives = 305/401 (77%), Gaps = 7/401 (1%)

Query  25   GRVVQVVGTIIKAVVPMVKIGEVCLLRNPGEDFEMHGEVVGFVRDAALLTPIGDMYGISS  84
            GR+ +V +T+++A +P V +GE+C ++ PGE++   +EVVG+    ALL+P+    G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  85   ATEVIPTGRTHMvpvgpgllgrvldglgrpldAAESGPLHAHKFYPVFADAPDPLTRRII  144
            + +V++  R H VPVG +LLGRV+DG+GRPLD+ E   +    + ++   +P ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPI  135

Query  145  HAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGRE  204
              PL  G+R +D++ TCGEGQR+GIF+A+G GKSTLL+ML +++  D  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  205  VREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSVT  264
            VREF++  L+ E R++ VIV ATSD++++ER +A +VAT+IAE+FRD+G+RV++L DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  265  RFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMNE  324
            R+ARA REI+LAAGE +    YPP+VF++LP+L+ER+GM + GSITA+YTVLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  325  PVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMAK  384
            P+ADE RS+LDGHIVLSR+L+   HYPA+DVLA+ SRV   V S  H+ LA+ +R  +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  385  YQDVELLVKIGEYKQGADASTDEAIQKIGQINAFLRQLTDE  425
            YQ+VELL++IGEY++G D+ TD AI+   +I +FLRQ  DE
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

311) bscN in NC_018518


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1164),  Expect = 9e-86, Method: Compositional matrix adjust.
 Identities = 211/401 (53%), Positives = 305/401 (77%), Gaps = 7/401 (1%)

Query  25   GRVVQVVGTIIKAVVPMVKIGEVCLLRNPGEDFEMHGEVVGFVRDAALLTPIGDMYGISS  84
            GR+ +V +T+++A +P V +GE+C ++ PGE++   +EVVG+    ALL+P+    G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  85   ATEVIPTGRTHMvpvgpgllgrvldglgrpldAAESGPLHAHKFYPVFADAPDPLTRRII  144
            + +V++  R H VPVG +LLGRV+DG+GRPLD+ E   +    + ++   +P ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPI  135

Query  145  HAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGRE  204
              PL  G+R +D++ TCGEGQR+GIF+A+G GKSTLL+ML +++  D  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  205  VREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSVT  264
            VREF++  L+ E R++ VIV ATSD++++ER +A +VAT+IAE+FRD+G+RV++L DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  265  RFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMNE  324
            R+ARA REI+LAAGE +    YPP+VF++LP+L+ER+GM + GSITA+YTVLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  325  PVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMAK  384
            P+ADE RS+LDGHIVLSR+L+   HYPA+DVLA+ SRV   V S  H+ LA+ +R  +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  385  YQDVELLVKIGEYKQGADASTDEAIQKIGQINAFLRQLTDE  425
            YQ+VELL++IGEY++G D+ TD AI+   +I +FLRQ  DE
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

312) bscN in NC_017223


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1164),  Expect = 9e-86, Method: Compositional matrix adjust.
 Identities = 211/401 (53%), Positives = 305/401 (77%), Gaps = 7/401 (1%)

Query  25   GRVVQVVGTIIKAVVPMVKIGEVCLLRNPGEDFEMHGEVVGFVRDAALLTPIGDMYGISS  84
            GR+ +V +T+++A +P V +GE+C ++ PGE++   +EVVG+    ALL+P+    G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  85   ATEVIPTGRTHMvpvgpgllgrvldglgrpldAAESGPLHAHKFYPVFADAPDPLTRRII  144
            + +V++  R H VPVG +LLGRV+DG+GRPLD+ E   +    + ++   +P ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPI  135

Query  145  HAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGRE  204
              PL  G+R +D++ TCGEGQR+GIF+A+G GKSTLL+ML +++  D  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  205  VREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSVT  264
            VREF++  L+ E R++ VIV ATSD++++ER +A +VAT+IAE+FRD+G+RV++L DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  265  RFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMNE  324
            R+ARA REI+LAAGE +    YPP+VF++LP+L+ER+GM + GSITA+YTVLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  325  PVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMAK  384
            P+ADE RS+LDGHIVLSR+L+   HYPA+DVLA+ SRV   V S  H+ LA+ +R  +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  385  YQDVELLVKIGEYKQGADASTDEAIQKIGQINAFLRQLTDE  425
            YQ+VELL++IGEY++G D+ TD AI+   +I +FLRQ  DE
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

313) bscN in NC_002929


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1164),  Expect = 9e-86, Method: Compositional matrix adjust.
 Identities = 211/401 (53%), Positives = 305/401 (77%), Gaps = 7/401 (1%)

Query  25   GRVVQVVGTIIKAVVPMVKIGEVCLLRNPGEDFEMHGEVVGFVRDAALLTPIGDMYGISS  84
            GR+ +V +T+++A +P V +GE+C ++ PGE++   +EVVG+    ALL+P+    G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  85   ATEVIPTGRTHMvpvgpgllgrvldglgrpldAAESGPLHAHKFYPVFADAPDPLTRRII  144
            + +V++  R H VPVG +LLGRV+DG+GRPLD+ E   +    + ++   +P ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPI  135

Query  145  HAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGRE  204
              PL  G+R +D++ TCGEGQR+GIF+A+G GKSTLL+ML +++  D  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  205  VREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSVT  264
            VREF++  L+ E R++ VIV ATSD++++ER +A +VAT+IAE+FRD+G+RV++L DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  265  RFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMNE  324
            R+ARA REI+LAAGE +    YPP+VF++LP+L+ER+GM + GSITA+YTVLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  325  PVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMAK  384
            P+ADE RS+LDGHIVLSR+L+   HYPA+DVLA+ SRV   V S  H+ LA+ +R  +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  385  YQDVELLVKIGEYKQGADASTDEAIQKIGQINAFLRQLTDE  425
            YQ+VELL++IGEY++G D+ TD AI+   +I +FLRQ  DE
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

314) UWK_03076 in NC_020304


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  311 bits (1164),  Expect = 9e-86, Method: Compositional matrix adjust.
 Identities = 200/419 (48%), Positives = 288/419 (69%), Gaps = 8/419 (1%)

Query  17   WGKVTRIVGLIIEGHCPHASIGSLCELTPLNNGAPILAEIVGFKDSRALLMPLGELRGLG  76
            WG++  + + ++++  P   +G LC + P ++    LAE+VG+++S+ALL P+    GL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  77   PGSKIRVIKESATIKVGQNLLGRVIDAMEQPIDGQPAPLLEEEKLIY-SLPPGPMERKNI  135
             G ++  ++    + VG+ LLGRVID+  +P+DG+  P  E     Y ++PP +M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP--EVCWKDYDAMPPPAMVRQPI  135

Query  136  SEPLDLGIRAINGLITCGMGQRMGIMAGSGVGKSVLLGMMARYARADINVIALIGERGRE  195
            ++PL  GIRAI+++ TCG GQR+GI +++GVGKS LL+M+   + AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  196  VREFIERDLGKEGLARSVIVVVTSDQSPLLRMRGAFVATSIAEYFCNKGKNVLLMMDSVT  255
            VREFI+  L+ E   R VIVV TSD+++L R+R+ FVAT+IAE+F ++GK V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  256  RFAMAMREIGLAVGEPPTTKGYTPSVFATLPKLLERAGRFTGKGSITGLYTVLVDGDDMT  315
            R+A A REI+LA GE + +  Y P+VF++LP+LLER+G    KGSIT++YTVLV+GDDM 
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  316  EPVADSVRSILDGHIVLSRSLAAKNHYPAIDIMNSASRIMREITHSRHIELAGRARNVLA  375
            EP+AD VRS+LDGHIVLSR LA + HYPAID++ + SR+   +T   H +LA+  R  LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  376  TYNEAEDLINIGAYAKGSNPKIDFAVSKINAINTFLRQGYDETTPLKETIESLGLLLSE  434
             Y+E E LI IG Y +G +   D A+     I TFLRQ+ DE       IE L  +L+E
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

315) escN in NC_013353


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 205/402 (51%), Positives = 298/402 (75%), Gaps = 7/402 (1%)

Query  48   ARLPKARIGAFYRIEPSQRLAEVIAIDEDEVFLLPFEHISGMYCGQWLSYQGDEFKIRVG  107
            A+LP   +G +  I P++ LAEV++I+    +L PF   +G+ CGQ +       ++ VG
Sbjct  35   AWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVG  94

Query  108  DELLGRLVDGIGRPM-GSNITAPYLPFERSLYAE-PPDPLLRQVIDQPFTLGVRAIDGLL  165
            + LLGR++DG+GRP+ G ++        +  Y   PP +++RQ I QP+  G+RAID++ 
Sbjct  95   EALLGRVIDGFGRPLDGRELPEVC----WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVA  150

Query  166  TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-LPQSTLS  224
            TCG GQR+GIF+++GVGKSTLL+M+CN++ AD  VL LIGERGREV EF+ + L++ T  
Sbjct  151  TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK  210

Query  225  KCVLVVTTSDRPALERMKaaftattiaeffRDQGKNVLLMMDSVTRYARAARDVGLASGE  284
            +CV+VV+TSDRPALER++A F ATTIAEFFRD+GK V+L+ DS+TRYARAAR+++LA+GE
Sbjct  211  RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE  270

Query  285  PDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV  344
              V G +PP+VFS+LP+LLER+G + KGSITA+YTVL+E+D++N+P++DEVRS+LDGHIV
Sbjct  271  TAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  345  LTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNIELLIRIGEYTM  404
            L+R LAE  H+PAID+  + SRV   V + EH + AA  ++ +A Y+++ELLIRIGEY  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  405  GQDPEADKAIKNRKAIQSFIQQSTKDISSYEKTIESLFKVVA  446
            G D ++DKAI     I +F++QS  ++ + E  IE L ++++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

316) Spirs_1565 in NC_014364


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  310 bits (1161),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 199/400 (50%), Positives = 283/400 (71%), Gaps = 4/400 (1%)

Query  22   GTVREVKGLLVESHGPQVVVGELCQILTSGGEPVWAEVVGFRDRTVQLMPFESMDGIEPG  81
            G +++V + L+++  P V +GELC I    GE + AEVVG+ +    L PF S  G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   SQVVAMGETLSVPVSEKMLGRVLDAMGRPIDGKGPVGGAESVSTVNTPPNVLTRKPIKRQ  141
             QV+A+     VPV+E +LGRV+D+ GRP+DG+  +           PP  + R+PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  142  MVTGVRAIDTMTPIGKGQRIGIFSGSGVGKSTLLGMIARNTSADINVIALIGERGREVQE  201
            ++TG+RAID+++  G GQR+GIFS++GVGKSTLL+M+     AD NV+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  202  FIEYDLGPEGLERSILVVSTGDTAPLSRLRGAFVATTIAEHFRDKGADVMLLFDSVTRFA  261
            FI++ L+ E   R ++VV+T+D ++L R+R+ FVATTIAE FRD+G  V+LL DS+TR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  262  RAQREIGLAVGEPPATRGYTPSVFSTLPKLLERCGTGERGTITGFYTILVEGDDMDEPVA  321
            RA REI+LA GE + +  Y P+VFS+LP+LLER G GE+G+IT+FYT+LVEGDDM+EP+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  322  DAVRGILDGHIVLSRKLAQAYRYPAIDVLASLSRLGTKITSPLVQKASGKLRSLLAVYTD  381
            D VR++LDGHIVLSR+LA+  +YPAIDVLA+LSR+   +TS   ++ ++ LR  LA+Y +
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  382  AEDLINVGAYAEGSNSaideaiekidaiREFLGQGITEAA  421
             E LI +G Y  G ++  D AI+    I  FL Q+  E  
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

317) Thit_1232 in NC_013921


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 194/402 (49%), Positives = 284/402 (71%), Gaps = 4/402 (0%)

Query  22   YGKVSQVIGLTIESTGPLSNIGEICNIKTTNGNIISAEVVGFKEEKVYLMPLGNMEGIGA  81
             G++ +V +  +++  P   +GE+C IK  +     AEVVG++  K  L P+ +  G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  82   GSKVIATGQTLRVSVGKELLGRILDGLGNPIDSKGPVKFEKSIPINNVPPDPLERKRIRE  141
            G +V+A  +  +V+VG  LLGR++DG+G P+D++           + +PP ++ R+ I +
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK-DYDAMPPPAMVRQPITQ  137

Query  142  VMPLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKADLNVIALIGERGREVN  201
             +  GI+AID++ TCG GQR+GIF+++GVGKSTLL+M+   + AD NV+ LIGERGREV 
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  202  EFLEKDLGEEGLKKSVVVVATSDTPALIRVKGAMTATAIAEYFRDQGLDVLLMMDSVTRF  261
            EF++  L+EE  K+ V+VVATSD PAL RV++   AT+IAE+FRD+G  V+L+ DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  262  AMAQREVGLSIGEAPVSRGYTPSVFSVLPKLLERSGCSKKGSITALYTVLVDGDDLNEPI  321
            A A RE++L+ GE++VS  Y P+VFS LP+LLER+G + KGSITA+YTVLV+GDD+NEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  322  ADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVMNDIITEEHKELIARFKDILASYT  381
            AD VR++LDGHIVLSR+LA++ HYPAIDVLA++SRV   + ++EH++L A ++  LA Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  382  EAEDLINIGAYNFGSNPKIDEAIELNDKMNNFLRQRIDESYD  423
            E E LI IG Y+ G +   D AI+    +  FLRQ  DE  +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

318) Tmath_1283 in NC_014209


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 194/402 (49%), Positives = 284/402 (71%), Gaps = 4/402 (0%)

Query  22   YGKVSQVIGLTIESTGPLSNIGEICNIKTTNGNIISAEVVGFKEEKVYLMPLGNMEGIGA  81
             G++ +V +  +++  P   +GE+C IK  +     AEVVG++  K  L P+ +  G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  82   GSKVIATGQTLRVSVGKELLGRILDGLGNPIDSKGPVKFEKSIPINNVPPDPLERKRIRE  141
            G +V+A  +  +V+VG  LLGR++DG+G P+D++           + +PP ++ R+ I +
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK-DYDAMPPPAMVRQPITQ  137

Query  142  VMPLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKADLNVIALIGERGREVN  201
             +  GI+AID++ TCG GQR+GIF+++GVGKSTLL+M+   + AD NV+ LIGERGREV 
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  202  EFLEKDLGEEGLKKSVVVVATSDTPALIRVKGAMTATAIAEYFRDQGLDVLLMMDSVTRF  261
            EF++  L+EE  K+ V+VVATSD PAL RV++   AT+IAE+FRD+G  V+L+ DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  262  AMAQREVGLSIGEAPVSRGYTPSVFSVLPKLLERSGCSKKGSITALYTVLVDGDDLNEPI  321
            A A RE++L+ GE++VS  Y P+VFS LP+LLER+G + KGSITA+YTVLV+GDD+NEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  322  ADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVMNDIITEEHKELIARFKDILASYT  381
            AD VR++LDGHIVLSR+LA++ HYPAIDVLA++SRV   + ++EH++L A ++  LA Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  382  EAEDLINIGAYNFGSNPKIDEAIELNDKMNNFLRQRIDESYD  423
            E E LI IG Y+ G +   D AI+    +  FLRQ  DE  +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

319) fliI in NC_017268


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 200/413 (49%), Positives = 297/413 (72%), Gaps = 11/413 (2%)

Query  13   LRESEPVKYV--GHVTAVRGLLIESRGPHAVVGELCRIVLRRQGRPLIAEVVGLAGSTVK  70
            L+ + P  Y   G++  V + L++++ P   +GELC I   + G  L AEVVG+ GS   
Sbjct  11   LKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKAL  66

Query  71   LMSYTDTHgvevgcavvaegaaLSVPVGDALLGRVLNAFGKAIDGKG--EIYAPLRSEVL  128
            L ++T T G++ G  V+A      VPVG+ALLGRV+++FG+++DG+   E+    + +  
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC---WKDYD  123

Query  129  RASSNPMERLPITRQMVTGVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIARNTDADV  188
              ++ +M R PIT+ ++TG+R +DS+ + G GQR+GIFS++GVGKSTL++M+    DAD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  189  SVIALIGERGREVMDFVAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEYFRDQ  248
            +V+ LIGERGREV +F+   L+ E  KR VIV ATSD ++L RVR+ + AT+IAE+FRD+
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  249  GKQVLLLFDSLTRFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSFSMGSVTAF  308
            GK+V+LL DSLTR+A+A REI+LA+GE + +  Y PGVF +LP+LLER+G    GS+TAF
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  309  YTVLVDGDDLDEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGADMK  368
            YTVLV+GDD++EP++D VR+++DGHIVLSR LA+R HYPAIDVL ++SR+   V + + +
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  369  EAVRIVRRALAVYAEVEDLVRVGAYQQGSDAELDRAIAMRAELERFLTQGAQE  421
            +   I+RR LA+Y EVE L+R+G YQ+G D++ D+AI   +++  FL Q+ +E
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

320) fliI in NC_016844


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 200/413 (49%), Positives = 297/413 (72%), Gaps = 11/413 (2%)

Query  13   LRESEPVKYV--GHVTAVRGLLIESRGPHAVVGELCRIVLRRQGRPLIAEVVGLAGSTVK  70
            L+ + P  Y   G++  V + L++++ P   +GELC I   + G  L AEVVG+ GS   
Sbjct  11   LKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKAL  66

Query  71   LMSYTDTHgvevgcavvaegaaLSVPVGDALLGRVLNAFGKAIDGKG--EIYAPLRSEVL  128
            L ++T T G++ G  V+A      VPVG+ALLGRV+++FG+++DG+   E+    + +  
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC---WKDYD  123

Query  129  RASSNPMERLPITRQMVTGVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIARNTDADV  188
              ++ +M R PIT+ ++TG+R +DS+ + G GQR+GIFS++GVGKSTL++M+    DAD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  189  SVIALIGERGREVMDFVAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEYFRDQ  248
            +V+ LIGERGREV +F+   L+ E  KR VIV ATSD ++L RVR+ + AT+IAE+FRD+
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  249  GKQVLLLFDSLTRFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSFSMGSVTAF  308
            GK+V+LL DSLTR+A+A REI+LA+GE + +  Y PGVF +LP+LLER+G    GS+TAF
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  309  YTVLVDGDDLDEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGADMK  368
            YTVLV+GDD++EP++D VR+++DGHIVLSR LA+R HYPAIDVL ++SR+   V + + +
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  369  EAVRIVRRALAVYAEVEDLVRVGAYQQGSDAELDRAIAMRAELERFLTQGAQE  421
            +   I+RR LA+Y EVE L+R+G YQ+G D++ D+AI   +++  FL Q+ +E
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

321) fliI in NC_021179


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 200/413 (49%), Positives = 297/413 (72%), Gaps = 11/413 (2%)

Query  13   LRESEPVKYV--GHVTAVRGLLIESRGPHAVVGELCRIVLRRQGRPLIAEVVGLAGSTVK  70
            L+ + P  Y   G++  V + L++++ P   +GELC I   + G  L AEVVG+ GS   
Sbjct  11   LKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKAL  66

Query  71   LMSYTDTHgvevgcavvaegaaLSVPVGDALLGRVLNAFGKAIDGKG--EIYAPLRSEVL  128
            L ++T T G++ G  V+A      VPVG+ALLGRV+++FG+++DG+   E+    + +  
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC---WKDYD  123

Query  129  RASSNPMERLPITRQMVTGVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIARNTDADV  188
              ++ +M R PIT+ ++TG+R +DS+ + G GQR+GIFS++GVGKSTL++M+    DAD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  189  SVIALIGERGREVMDFVAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEYFRDQ  248
            +V+ LIGERGREV +F+   L+ E  KR VIV ATSD ++L RVR+ + AT+IAE+FRD+
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  249  GKQVLLLFDSLTRFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSFSMGSVTAF  308
            GK+V+LL DSLTR+A+A REI+LA+GE + +  Y PGVF +LP+LLER+G    GS+TAF
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  309  YTVLVDGDDLDEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGADMK  368
            YTVLV+GDD++EP++D VR+++DGHIVLSR LA+R HYPAIDVL ++SR+   V + + +
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  369  EAVRIVRRALAVYAEVEDLVRVGAYQQGSDAELDRAIAMRAELERFLTQGAQE  421
            +   I+RR LA+Y EVE L+R+G YQ+G D++ D+AI   +++  FL Q+ +E
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

322) fliI in NC_021490


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 200/413 (49%), Positives = 297/413 (72%), Gaps = 11/413 (2%)

Query  13   LRESEPVKYV--GHVTAVRGLLIESRGPHAVVGELCRIVLRRQGRPLIAEVVGLAGSTVK  70
            L+ + P  Y   G++  V + L++++ P   +GELC I   + G  L AEVVG+ GS   
Sbjct  11   LKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKAL  66

Query  71   LMSYTDTHgvevgcavvaegaaLSVPVGDALLGRVLNAFGKAIDGKG--EIYAPLRSEVL  128
            L ++T T G++ G  V+A      VPVG+ALLGRV+++FG+++DG+   E+    + +  
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC---WKDYD  123

Query  129  RASSNPMERLPITRQMVTGVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIARNTDADV  188
              ++ +M R PIT+ ++TG+R +DS+ + G GQR+GIFS++GVGKSTL++M+    DAD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  189  SVIALIGERGREVMDFVAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEYFRDQ  248
            +V+ LIGERGREV +F+   L+ E  KR VIV ATSD ++L RVR+ + AT+IAE+FRD+
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  249  GKQVLLLFDSLTRFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSFSMGSVTAF  308
            GK+V+LL DSLTR+A+A REI+LA+GE + +  Y PGVF +LP+LLER+G    GS+TAF
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  309  YTVLVDGDDLDEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGADMK  368
            YTVLV+GDD++EP++D VR+++DGHIVLSR LA+R HYPAIDVL ++SR+   V + + +
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  369  EAVRIVRRALAVYAEVEDLVRVGAYQQGSDAELDRAIAMRAELERFLTQGAQE  421
            +   I+RR LA+Y EVE L+R+G YQ+G D++ D+AI   +++  FL Q+ +E
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

323) TP0402 in NC_000919


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 200/413 (49%), Positives = 297/413 (72%), Gaps = 11/413 (2%)

Query  13   LRESEPVKYV--GHVTAVRGLLIESRGPHAVVGELCRIVLRRQGRPLIAEVVGLAGSTVK  70
            L+ + P  Y   G++  V + L++++ P   +GELC I   + G  L AEVVG+ GS   
Sbjct  11   LKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKAL  66

Query  71   LMSYTDTHgvevgcavvaegaaLSVPVGDALLGRVLNAFGKAIDGKG--EIYAPLRSEVL  128
            L ++T T G++ G  V+A      VPVG+ALLGRV+++FG+++DG+   E+    + +  
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC---WKDYD  123

Query  129  RASSNPMERLPITRQMVTGVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIARNTDADV  188
              ++ +M R PIT+ ++TG+R +DS+ + G GQR+GIFS++GVGKSTL++M+    DAD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  189  SVIALIGERGREVMDFVAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEYFRDQ  248
            +V+ LIGERGREV +F+   L+ E  KR VIV ATSD ++L RVR+ + AT+IAE+FRD+
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  249  GKQVLLLFDSLTRFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSFSMGSVTAF  308
            GK+V+LL DSLTR+A+A REI+LA+GE + +  Y PGVF +LP+LLER+G    GS+TAF
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  309  YTVLVDGDDLDEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGADMK  368
            YTVLV+GDD++EP++D VR+++DGHIVLSR LA+R HYPAIDVL ++SR+   V + + +
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  369  EAVRIVRRALAVYAEVEDLVRVGAYQQGSDAELDRAIAMRAELERFLTQGAQE  421
            +   I+RR LA+Y EVE L+R+G YQ+G D++ D+AI   +++  FL Q+ +E
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

324) fliI in NC_016848


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 200/413 (49%), Positives = 297/413 (72%), Gaps = 11/413 (2%)

Query  13   LRESEPVKYV--GHVTAVRGLLIESRGPHAVVGELCRIVLRRQGRPLIAEVVGLAGSTVK  70
            L+ + P  Y   G++  V + L++++ P   +GELC I   + G  L AEVVG+ GS   
Sbjct  11   LKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKAL  66

Query  71   LMSYTDTHgvevgcavvaegaaLSVPVGDALLGRVLNAFGKAIDGKG--EIYAPLRSEVL  128
            L ++T T G++ G  V+A      VPVG+ALLGRV+++FG+++DG+   E+    + +  
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC---WKDYD  123

Query  129  RASSNPMERLPITRQMVTGVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIARNTDADV  188
              ++ +M R PIT+ ++TG+R +DS+ + G GQR+GIFS++GVGKSTL++M+    DAD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  189  SVIALIGERGREVMDFVAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEYFRDQ  248
            +V+ LIGERGREV +F+   L+ E  KR VIV ATSD ++L RVR+ + AT+IAE+FRD+
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  249  GKQVLLLFDSLTRFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSFSMGSVTAF  308
            GK+V+LL DSLTR+A+A REI+LA+GE + +  Y PGVF +LP+LLER+G    GS+TAF
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  309  YTVLVDGDDLDEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGADMK  368
            YTVLV+GDD++EP++D VR+++DGHIVLSR LA+R HYPAIDVL ++SR+   V + + +
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  369  EAVRIVRRALAVYAEVEDLVRVGAYQQGSDAELDRAIAMRAELERFLTQGAQE  421
            +   I+RR LA+Y EVE L+R+G YQ+G D++ D+AI   +++  FL Q+ +E
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

325) fliI in NC_016843


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 200/413 (49%), Positives = 297/413 (72%), Gaps = 11/413 (2%)

Query  13   LRESEPVKYV--GHVTAVRGLLIESRGPHAVVGELCRIVLRRQGRPLIAEVVGLAGSTVK  70
            L+ + P  Y   G++  V + L++++ P   +GELC I   + G  L AEVVG+ GS   
Sbjct  11   LKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKAL  66

Query  71   LMSYTDTHgvevgcavvaegaaLSVPVGDALLGRVLNAFGKAIDGKG--EIYAPLRSEVL  128
            L ++T T G++ G  V+A      VPVG+ALLGRV+++FG+++DG+   E+    + +  
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC---WKDYD  123

Query  129  RASSNPMERLPITRQMVTGVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIARNTDADV  188
              ++ +M R PIT+ ++TG+R +DS+ + G GQR+GIFS++GVGKSTL++M+    DAD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  189  SVIALIGERGREVMDFVAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEYFRDQ  248
            +V+ LIGERGREV +F+   L+ E  KR VIV ATSD ++L RVR+ + AT+IAE+FRD+
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  249  GKQVLLLFDSLTRFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSFSMGSVTAF  308
            GK+V+LL DSLTR+A+A REI+LA+GE + +  Y PGVF +LP+LLER+G    GS+TAF
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  309  YTVLVDGDDLDEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGADMK  368
            YTVLV+GDD++EP++D VR+++DGHIVLSR LA+R HYPAIDVL ++SR+   V + + +
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  369  EAVRIVRRALAVYAEVEDLVRVGAYQQGSDAELDRAIAMRAELERFLTQGAQE  421
            +   I+RR LA+Y EVE L+R+G YQ+G D++ D+AI   +++  FL Q+ +E
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

326) fliI in NC_016842


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 200/413 (49%), Positives = 297/413 (72%), Gaps = 11/413 (2%)

Query  13   LRESEPVKYV--GHVTAVRGLLIESRGPHAVVGELCRIVLRRQGRPLIAEVVGLAGSTVK  70
            L+ + P  Y   G++  V + L++++ P   +GELC I   + G  L AEVVG+ GS   
Sbjct  11   LKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKAL  66

Query  71   LMSYTDTHgvevgcavvaegaaLSVPVGDALLGRVLNAFGKAIDGKG--EIYAPLRSEVL  128
            L ++T T G++ G  V+A      VPVG+ALLGRV+++FG+++DG+   E+    + +  
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC---WKDYD  123

Query  129  RASSNPMERLPITRQMVTGVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIARNTDADV  188
              ++ +M R PIT+ ++TG+R +DS+ + G GQR+GIFS++GVGKSTL++M+    DAD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  189  SVIALIGERGREVMDFVAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEYFRDQ  248
            +V+ LIGERGREV +F+   L+ E  KR VIV ATSD ++L RVR+ + AT+IAE+FRD+
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  249  GKQVLLLFDSLTRFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSFSMGSVTAF  308
            GK+V+LL DSLTR+A+A REI+LA+GE + +  Y PGVF +LP+LLER+G    GS+TAF
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  309  YTVLVDGDDLDEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGADMK  368
            YTVLV+GDD++EP++D VR+++DGHIVLSR LA+R HYPAIDVL ++SR+   V + + +
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  369  EAVRIVRRALAVYAEVEDLVRVGAYQQGSDAELDRAIAMRAELERFLTQGAQE  421
            +   I+RR LA+Y EVE L+R+G YQ+G D++ D+AI   +++  FL Q+ +E
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

327) fliI in NC_010741


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 200/413 (49%), Positives = 297/413 (72%), Gaps = 11/413 (2%)

Query  13   LRESEPVKYV--GHVTAVRGLLIESRGPHAVVGELCRIVLRRQGRPLIAEVVGLAGSTVK  70
            L+ + P  Y   G++  V + L++++ P   +GELC I   + G  L AEVVG+ GS   
Sbjct  11   LKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKAL  66

Query  71   LMSYTDTHgvevgcavvaegaaLSVPVGDALLGRVLNAFGKAIDGKG--EIYAPLRSEVL  128
            L ++T T G++ G  V+A      VPVG+ALLGRV+++FG+++DG+   E+    + +  
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC---WKDYD  123

Query  129  RASSNPMERLPITRQMVTGVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIARNTDADV  188
              ++ +M R PIT+ ++TG+R +DS+ + G GQR+GIFS++GVGKSTL++M+    DAD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  189  SVIALIGERGREVMDFVAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEYFRDQ  248
            +V+ LIGERGREV +F+   L+ E  KR VIV ATSD ++L RVR+ + AT+IAE+FRD+
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  249  GKQVLLLFDSLTRFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSFSMGSVTAF  308
            GK+V+LL DSLTR+A+A REI+LA+GE + +  Y PGVF +LP+LLER+G    GS+TAF
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  309  YTVLVDGDDLDEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGADMK  368
            YTVLV+GDD++EP++D VR+++DGHIVLSR LA+R HYPAIDVL ++SR+   V + + +
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  369  EAVRIVRRALAVYAEVEDLVRVGAYQQGSDAELDRAIAMRAELERFLTQGAQE  421
            +   I+RR LA+Y EVE L+R+G YQ+G D++ D+AI   +++  FL Q+ +E
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

328) Cphy_2714 in NC_010001


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  310 bits (1162),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 193/420 (46%), Positives = 295/420 (71%), Gaps = 10/420 (2%)

Query  18   RLGKVTKVVGLTVESIGPDASVNDLCEIISQDKSIVVKAEVIGFRDDKLLLMPYDDITGI  77
            R G++  V +  +++  P+  + +LC I + +      AEV+G+ + K LL P+   +G+
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL----AEVVGINGSKALLSPFTSTAGL  76

Query  78   GVGSMVLNKKEPLLVKVGDELLGQTLDGLGNPMD---MSTLSLSESYPVDAKAPDPMDRE  134
              G  V+  +    V VG+ LLG+ +DG+G P+D   ++ +   + Y  DA +P +M R+
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD-Y--DAMPPPAMVRQ  133

Query  135  LIGEVLSLGVRAVDGLLTIGKGQRIGIFAGSGVGKSTLLGMFARNTKADINVIALIGERG  194
             I + L  G+RA+D++ T G GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  195  REVKEFIERDLGPEGVKRSVLVIATSDKPALIRkkaaktataiaEYFRDKGKDVLLMMDS  254
            REV+EFI+  L+ E  KR V+V+ATSD+PAL R +A   AT+IAE+FRD+GK V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  255  LTRFSMAQREIGLASGEPPVSRGYPPSVYSEMPKLLERAGNSDKGSITGLYTVLVDGDDF  314
            LTR++ A REI+LA+GE +VS  YPP+V+S +P+LLER+G ++KGSIT++YTVLV+GDD 
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  315  NEPITDTARGILDGHIVLSRKMAQKNHYPAIDVLASISRVMSAIATSEHKKLAGKLKMVL  374
            NEP++D  R++LDGHIVLSR++A++ HYPAIDVLA++SRV + +++ EH++LA+ L+  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  375  ATYQDAEDLINIGAYKPGTNKNIDYSMRKIEQVNEFLCQQVDDKADFEDTIHKLESIFED  434
            A YQ+ E LI IG Y+ G + + D ++    ++  FL Q  D+  + E  I+KL+ I+ +
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

329) escN in NC_013361


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  309 bits (1159),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 204/402 (51%), Positives = 297/402 (74%), Gaps = 7/402 (1%)

Query  48   ARLPKARIGAFYKIEPSQRLAEVIAIDEDEVFLLPFEHISGMYCGQWLSYQGEEFKIRVG  107
            A+LP   +G +  I P++ LAEV++I+    +L PF   +G+ CGQ +       ++ VG
Sbjct  35   AWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVG  94

Query  108  DELLGRLVDGIGRPM-GSNITAPYLPFERSLYAE-PPDPLLRQVIDQPFTLGVRAIDGLL  165
            + LLGR++DG+GRP+ G ++        +  Y   PP +++RQ I QP+  G+RAID++ 
Sbjct  95   EALLGRVIDGFGRPLDGRELPEVC----WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVA  150

Query  166  TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-LPQSTLS  224
            TCG GQR+GIF+++GVGKSTLL+M+CN++ AD  VL LIGERGREV EF+ + L++ T  
Sbjct  151  TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK  210

Query  225  KCVLVVTTSDRPALERMKaaftattiaeffRDQGKNVLLMMDSVTRYARAARDVGLASGE  284
            +CV+VV+TSDRPALER++A F ATTIAEFFRD+GK V+L+ DS+TRYARAAR+++LA+GE
Sbjct  211  RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE  270

Query  285  PDVRGGFPPSVFASLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV  344
              V G +PP+VF++LP+LLER+G + KGSITA+YTVL+E+D++N+P++DEVRS+LDGHIV
Sbjct  271  TAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  345  LTRELAEENHFPAIDIGLSASRVMHNVVKSEHLRAAAECKKLIATYKNIELLIRIGEYTM  404
            L+R LAE  H+PAID+  + SRV   V   EH + AA  ++ +A Y+++ELLIRIGEY  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  405  GQDPEADKAIKNRKAIQSFIQQSTKDISSYEKTIESLFKVVA  446
            G D ++DKAI     I +F++QS  ++ + E  IE L ++++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

330) Tresu_1125 in NC_015385


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  309 bits (1159),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 196/402 (49%), Positives = 286/402 (72%), Gaps = 9/402 (2%)

Query  22   GSVIGVKGLMIESKGPRSVIGEICTIHIPSIQSSVLAEVVGLEDSSVRLMAYGETKGIEV  81
            G + +V + ++++  P   +GE+C I      +  LAEVVG+++S   L ++  T G++ 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK----PGEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  82   GCEVVASGHVLEVPVGLSLLGRVIDATGKPYDGKGEIFPEAYYPALAS-PPNPMERKPID  140
            G +V+A  +  +VPVG +LLGRVID+ G+P DG+   +PE       + PP +M R+PI 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE--LPEVCWKDYDAMPPPAMVRQPIT  136

Query  141  KRIVTGVRAIDGILTVGKGQRLGIFAGSGVGKSTLLSMIARNTNADINVIGLIGERGREV  200
            + ++TG+RAID++ T G GQR+GIF+++GVGKSTLL+M+    +AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  201  MDFIKRDLGEEGLKRSVLVVATSDQPSISRLRAAYVTTAIAEYFRDQGKDVMLMFDSVTR  260
             +FI   L+EE  KR V+VVATSD+P++ R+RA +V+T+IAE+FRD+GK V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  261  FAHAQREIGLATGEPPAQRGYPPSVFDMLPKLLERTGTNDKGSITAFYTVLVDGDDMDEP  320
            +A+A REI+LA+GE +    YPP+VF  LP+LLERTG  +KGSITAFYTVLV+GDDM+EP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  321  IADKVRGTLDGHIVLQRSLAARQHYPAIDMLTSISRLSKRVSGTCTKKAVQRVRRWISVY  380
            +AD VR+ LDGHIVL R LA R HYPAID+L+++SR+   V++   ++    +RR++++Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  381  SEQEEMINAGVYQKGSSPEIDEAIDHHQAVEEFL--CQEENC  420
             E E +I  G YQ+G   + D AID    +  FL   ++E C
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

331) Geob_0497 in NC_011979


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  309 bits (1158),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 199/417 (48%), Positives = 294/417 (71%), Gaps = 6/417 (1%)

Query  24   HGKVTQVVGLVIEGFCPETAVGTLCEINSQGSESIPAEVVGFRENKTLLMPLGELRGVGL  83
             G++ +V + ++++  P   +G LC I++  +E + AEVVG+  +K+LL P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKP--GEEL-AEVVGINGSKALLSPFTSTAGLHC  78

Query  84   GSLISVRREKASLGVGPALLGRVIDGLGAPIDDRG-PIITGEEYPIYATPVNPMKRRPIR  142
            G  +   R +  + VG ALLGRVIDG+G P+D+R  P +   +Y   A P  +M R+PI 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPIT  136

Query  143  QPLDLGIRAINGLLTCGEGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGREL  202
            QPL  GIRAI+++ TCGEGQRVGI +++GVGKSTLL+M+    +AD NV+ LIGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  203  REFIEKDLQAEGLKKSVVVVATSDQPPLVRMRGAYIATTIAEYFQAQGKKVLLMMDSATR  262
            REFI+  L  E  K+ V+VVATSD+P+L R+R+ ++ATTIAE+F+ +GK+V+L+ DS TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  263  FAMAMREVGLAIGEPPTTKGYTPSVFAALPKLLERTGNFQNGSITGLYTVLVEGDDFNEP  322
            +A A RE++LA GE + +  Y P+VF+ALP+LLERTG  ++GSIT++YTVLVEGDD NEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  323  ISDAMRSILDGHIVLSRELAARNIYPPIDVLNSASRVMMDVTAKNHQKLAGNFKGVLATY  382
            ++D +RS+LDGHIVLSR LA R  YP+IDVL + SRV   VT+ +H++LA+ ++  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  383  RQAEDLINIGAYKPGSNPGIDYALAKIEHMNAYLKQDIKDGVGVENAVMELEAIFDD  439
            ++ E LI IG Y+ G + + D A+    ++ ++L+Q   +  G E  +  L+ I+ +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

332) bscN in NC_002927


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  309 bits (1157),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 211/401 (53%), Positives = 304/401 (76%), Gaps = 7/401 (1%)

Query  25   GRVVQVVGTIIKAVVPMVKIGEVCLLRNPGEDFEMHGEVVGFVRDAALLTPIGDMYGISS  84
            GR+ +V +T+++A +P V +GE+C ++ PGE++   +EVVG+    ALL+P+    G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  85   ATEVIPTGRTHMvpvgpgllgrvldglgrpldVAESGPLHAHKFYPVFADAPDPLTRRII  144
            + +V++  R H VPVG +LLGRV+DG+GRPLD  E   +    + ++   +P ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPI  135

Query  145  HAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGRE  204
              PL  G+R +D++ TCGEGQR+GIF+A+G GKSTLL+ML +++  D  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  205  VREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSVT  264
            VREF++  L+ E R++ VIV ATSD++++ER +A +VAT+IAE+FRD+G+RV++L DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  265  RFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMNE  324
            R+ARA REI+LAAGE +    YPP+VF++LP+L+ER+GM + GSITA+YTVLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  325  PVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMAK  384
            P+ADE RS+LDGHIVLSR+L+   HYPA+DVLA+ SRV   V S  H+ LA+ +R  +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  385  YQDVELLVKIGEYKQGADASTDEAIQKIGQINAFLRQLTDE  425
            YQ+VELL++IGEY++G D+ TD AI+   +I +FLRQ  DE
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

333) BN117_1390 in NC_018828


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  309 bits (1157),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 211/401 (53%), Positives = 304/401 (76%), Gaps = 7/401 (1%)

Query  25   GRVVQVVGTIIKAVVPMVKIGEVCLLRNPGEDFEMHGEVVGFVRDAALLTPIGDMYGISS  84
            GR+ +V +T+++A +P V +GE+C ++ PGE++   +EVVG+    ALL+P+    G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  85   ATEVIPTGRTHMvpvgpgllgrvldglgrpldVAESGPLHAHKFYPVFADAPDPLTRRII  144
            + +V++  R H VPVG +LLGRV+DG+GRPLD  E   +    + ++   +P ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPI  135

Query  145  HAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGRE  204
              PL  G+R +D++ TCGEGQR+GIF+A+G GKSTLL+ML +++  D  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  205  VREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSVT  264
            VREF++  L+ E R++ VIV ATSD++++ER +A +VAT+IAE+FRD+G+RV++L DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  265  RFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMNE  324
            R+ARA REI+LAAGE +    YPP+VF++LP+L+ER+GM + GSITA+YTVLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  325  PVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMAK  384
            P+ADE RS+LDGHIVLSR+L+   HYPA+DVLA+ SRV   V S  H+ LA+ +R  +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  385  YQDVELLVKIGEYKQGADASTDEAIQKIGQINAFLRQLTDE  425
            YQ+VELL++IGEY++G D+ TD AI+   +I +FLRQ  DE
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

334) MROS_2132 in NC_018178


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  309 bits (1157),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 197/399 (50%), Positives = 281/399 (71%), Gaps = 5/399 (1%)

Query  40   PNAVMGEVCSIVDKDGNEICKSEVVGFKDGKVLSIALGEVHAISPACEIKATGRGFYVGV  99
            P   MGE+C I  K G+E+  +EVVG++++K L  ++    ++  + ++ A  R   V V
Sbjct  38   PGVFMGELCCI--KPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPV  93

Query  100  GHELLGRVIDGLGNPIDGKGEINYTAFREAHREAPNPLARKRITTPLQTGIRAIDGLLTI  159
            G+ LLGRVIDG+G P+DG+ E+     ++ +  +P ++ R+ IT PL TGIRAID++ T 
Sbjct  94   GEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATC  152

Query  160  GKGQRMGIFAGSGVGKSVTLGMIARNTSADINVITLIGERGREVREFIERDLGEEGLKRS  219
            G GQR+GIF+++GVGKS  L+M+     AD NV+ LIGERGREVREFI+  L+EE  KR 
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  220  VVVVATSDKSPLIRMKGAYVGTTIAEYFRDQGLNVMLMMDSVTRFAMAQREVGLTIGEPP  279
            V+VVATSD+++L R+++ +V+TTIAE+FRD+G  V+L+ DS+TR+A A RE++L+ GE +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  280  TTKGYTPSVFALLPKLLERAGNSEKGSITGIYTVLVDGDDMVEPIADAVRSILDGHIVLS  339
             +  Y P+VF+ LP+LLER+G +EKGSIT++YTVLV+GDDM EP+AD VRS+LDGHIVLS
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLS  332

Query  340  RKLANKGHYPAIDTLQSVSRVMPDIIDSEHYKKVMSFNELLATYREAEDLINIGAYARGS  399
            R+LA++GHYPAID L ++SRV P +   EH +    +   LA Y+E E LI IG Y RG 
Sbjct  333  RRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGV  392

Query  400  NPKIDLAISKIEALNGFLKQGIFEKANYPDTIEKLRQLI  438
            +   D AI     +  FL+Q+  E       IEKL+Q++
Sbjct  393  DTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

335) Athe_2170 in NC_012034


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  309 bits (1157),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 210/433 (49%), Positives = 303/433 (70%), Gaps = 7/433 (1%)

Query  1    MIEKLKSKIENTNFYQFTGFVNQVIGLTIESQGPAVSIGTLCRIKAAKTETLAEVVGFKE  60
            ++++L+ K    + Y   G +++V +  +++  P+V +G LC IK++  E LAEVVG++ 
Sbjct  5    LMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPG--EELAEVVGING  62

Query  61   NKVLLMPYSDLVGVFPGCKVIAQDSMFEVKVGKELLGRILDGLGQPIDGKG--EIKSKIK  118
            +K LL P++   G+  G +V+A     +V VG  LLGR++DG+G+P+DG+   E+  K  
Sbjct  63   SKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK-D  121

Query  119  YPVENRAPNPLERPRIDTIMPLGIKAIDTLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA  178
            Y  +  +P ++ R  I   +  GI+AID++ T G GQRVGIF+++GVGKSTLL+M+   +
Sbjct  122  Y--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAP  179

Query  179  KADVNVLALIGERGRelkeflekdlkeeglkRSVVVVATSDESALKRVKAAYVAMAIAEY  238
             AD NVL LIGERGRE++EF++  L EE  KR V+VVATSD +AL RV+A +VA +IAE+
Sbjct  180  DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEF  239

Query  239  FRDQGLDVLFLMDSLTRFAMAQREIGLAIGEPPVSRGYTPSVFSIMPKLLERAGKNQKGS  298
            FRD+G  V++L DSLTR+A A REI+LA GE +VS  Y P+VFS +P+LLER+G  +KGS
Sbjct  240  FRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGS  299

Query  299  ITALFTVLVDGDDFNEPITDTARGILDGHIVLSRAIANKNHYPAIDVLASISRVMNDIVE  358
            ITA++TVLV+GDD NEP++D  R++LDGHIVLSR +A++ HYPAIDVLA++SRV   +  
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  359  PSHRELANETKRVLAVYREAEDLINIGAYTKGSNPEIDRAIELVPRINQFLRQDVDERFE  418
              HR+LA   +R LA+Y+E E LI IG Y +G + + D+AI+  P I  FLRQ  DE   
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  419  FEEEIDMLKAIIS  431
             E  I+ L  I++
Sbjct  420  PELLIEKLHQILT  432

336) fliI in NC_018722


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  309 bits (1157),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 200/413 (49%), Positives = 296/413 (72%), Gaps = 11/413 (2%)

Query  13   LRESEPVKYV--GHVTAVRGLLIESRGPHAVVGELCRIVLRRQGRPLIAEVVGLAGSTVK  70
            L+ + P  Y   G++  V + L++++ P   +GELC I   + G  L AEVVG+ GS   
Sbjct  11   LKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKAL  66

Query  71   LMSYTDTHgvevgcavvaegaaLSVPVGDALLGRVLNAFGKAIDGKG--EIYAPLRSEVL  128
            L ++T T G++ G  V+A      VPVG+ALLGRV+++FG+++DG+   E+    + +  
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC---WKDYD  123

Query  129  RASSNLMERLPITRQMVTGVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIARNTDADV  188
              ++  M R PIT+ ++TG+R +DS+ + G GQR+GIFS++GVGKSTL++M+    DAD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  189  SVIALIGERGREVMDFVAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEYFRDQ  248
            +V+ LIGERGREV +F+   L+ E  KR VIV ATSD ++L RVR+ + AT+IAE+FRD+
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  249  GKQVLLLFDSLTRFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSFSMGSVTAF  308
            GK+V+LL DSLTR+A+A REI+LA+GE + +  Y PGVF +LP+LLER+G    GS+TAF
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  309  YTVLVDGDDLDEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGADMK  368
            YTVLV+GDD++EP++D VR+++DGHIVLSR LA+R HYPAIDVL ++SR+   V + + +
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  369  EAVRIVRRALAVYAEVEDLVRVGAYQQGSDAELDRAIAMRAELERFLTQGAQE  421
            +   I+RR LA+Y EVE L+R+G YQ+G D++ D+AI   +++  FL Q+ +E
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

337) fliI in NC_021508


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  309 bits (1157),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 200/413 (49%), Positives = 296/413 (72%), Gaps = 11/413 (2%)

Query  13   LRESEPVKYV--GHVTAVRGLLIESRGPHAVVGELCRIVLRRQGRPLIAEVVGLAGSTVK  70
            L+ + P  Y   G++  V + L++++ P   +GELC I   + G  L AEVVG+ GS   
Sbjct  11   LKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKAL  66

Query  71   LMSYTDTHgvevgcavvaegaaLSVPVGDALLGRVLNAFGKAIDGKG--EIYAPLRSEVL  128
            L ++T T G++ G  V+A      VPVG+ALLGRV+++FG+++DG+   E+    + +  
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC---WKDYD  123

Query  129  RASSNLMERLPITRQMVTGVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIARNTDADV  188
              ++  M R PIT+ ++TG+R +DS+ + G GQR+GIFS++GVGKSTL++M+    DAD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  189  SVIALIGERGREVMDFVAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEYFRDQ  248
            +V+ LIGERGREV +F+   L+ E  KR VIV ATSD ++L RVR+ + AT+IAE+FRD+
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  249  GKQVLLLFDSLTRFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSFSMGSVTAF  308
            GK+V+LL DSLTR+A+A REI+LA+GE + +  Y PGVF +LP+LLER+G    GS+TAF
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  309  YTVLVDGDDLDEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGADMK  368
            YTVLV+GDD++EP++D VR+++DGHIVLSR LA+R HYPAIDVL ++SR+   V + + +
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  369  EAVRIVRRALAVYAEVEDLVRVGAYQQGSDAELDRAIAMRAELERFLTQGAQE  421
            +   I+RR LA+Y EVE L+R+G YQ+G D++ D+AI   +++  FL Q+ +E
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

338) Gura_4210 in NC_009483


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  309 bits (1158),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 197/415 (48%), Positives = 295/415 (72%), Gaps = 6/415 (1%)

Query  24   HGKVTQVVGLVIEGFCPETAVGTLCEINSHGSDPIPAEVVGFRDNKTLLMPLGELRGVGL  83
             G++ +V + ++++  P   +G LC I++  ++ + AEVVG+ ++K+LL P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKP--GEEL-AEVVGINGSKALLSPFTSTAGLHC  78

Query  84   GSLISVRREKASLGVGPALLGRVIDGLGSPIDDRG-AIITGEEYPIYAMPVNPMKRRPIR  142
            G  +   R +  + VG ALLGRVIDG+G P+D+R  + +   +Y   AMP  +M R+PI 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPIT  136

Query  143  EPLDLGIRAINGLLTCGEGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGREL  202
            +PL  GIRAI+++ TCGEGQRVGI +++GVGKSTLL+M+    +AD NV+ LIGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  203  REFIEKDLQEEGLKKSVVVVATSDQPPLVRMRGAYIATTIAEYFQAQGKKVLLMMDSATR  262
            REFI+  L EE  K+ V+VVATSD+P+L R+R+ ++ATTIAE+F+ +GK+V+L+ DS TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  263  FAMAMREVGLAIGEPPTTKGYTPSVFAALPKLLERAGNFHGGSITGLYTVLVEGDDFNEP  322
            +A A RE++LA GE + +  Y P+VF+ALP+LLER+G  + GSIT++YTVLVEGDD NEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  323  VSDAMRSILDGHIILSRELAARNIYPPIDVLNSASRVMMDVTSREHQKLAGGFKGVLATY  382
            ++D +RS+LDGHI+LSR LA R  YP+IDVL + SRV   VTS+EH++LA+ ++  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  383  RQAEDLINIGAYKPGSNPKIDYAIAKIEHMNSYLKQDVNDGVEVDAAVASLAEIF  437
            ++ E LI IG Y+ G +   D AI    ++ ++L+Q  ++    +  +  L +I+
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

339) GYMC10_4188 in NC_013406


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  309 bits (1157),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 189/411 (46%), Positives = 293/411 (72%), Gaps = 7/411 (1%)

Query  23   GKVTQVIGLMVESEGPDASIGDVCYIYPTKQSKPLKAEVVGFRDNKVLLMPLGELHSIGP  82
            G++ +V + ++++  P+  +G++C I   K +  L AEVVG+ ++K LL P+    ++  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKALLSPFTSTAGLHC  78

Query  83   GCDVVGTGKPLSVQVGSELLGKVLDGLGQPLDGSIIPA-RMPHYSTHNVPQNPLNRPRVQ  141
            G +V++  +   V VG  LLG+V+DG+G+PLDG  +P     +Y +  +P  ++ R  + 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDA--MPPPAMVRQPIT  136

Query  142  EPISIGVRAIDGLLSIGKGQRVGIFAGSGVGKSTLMGMIARNTSADVNVIALIGERGREV  201
            +P+  G+RAID++ + G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  202  LDFIERDLGPEGLKRSVVIVATSDQPALIRIKGALIATTIAEYFRDRGLNVMLMMDSVTR  261
             +FI+  L+ E  KR V++VATSD+PAL R+++ ++ATTIAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  262  YAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTVLVDGDDMNEP  321
            YA A RE++LA GE +    Y P+VF++LP+LLER+G G  GSITAFYTVLV+GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  322  IADAVRGILDGHIVLNRNIANKGHFPAIDVLASISRVMKDISPEEQIDASENVKRLMAIY  381
            +AD VR++LDGHIVL+R +A++GH+PAIDVLA++SRV   ++++E+ + +  ++R +A+Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  KDSEDLINIGAYQQGSNADIDESIEYIGRIWDFTKQKVNEKTTLDEVQERL  432
            ++ E LI IG YQ+G ++D D +I+    I  F +Q  +E    + + E+L
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

340) sctN in NC_002620


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  308 bits (1155),  Expect = 4e-85, Method: Compositional matrix adjust.
 Identities = 202/403 (51%), Positives = 295/403 (74%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELSGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIATGLPLHIRAGAGLLGRVLNGLGEPIDIETKGPLENVDSIYPIFKA-PPDPLHREK  143
             +V+A     ++  G +LLGRV++G+G P+D       E  +     + A PP ++ R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-----ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASEKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G +EKG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

341) fliI in NC_017454


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  308 bits (1155),  Expect = 4e-85, Method: Compositional matrix adjust.
 Identities = 197/417 (48%), Positives = 294/417 (71%), Gaps = 6/417 (1%)

Query  22   HGKVTQVVGLVIEGFCPDAAVGTLCLVHPNDGDPIPAEVVGFRDNKTLLMPLGELRGVGL  81
             G++ +V + ++++  P+  +G LC + P +     AEVVG+ ++K+LL P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHC  78

Query  82   GSLISVKRKKASLGVGPGLLGRVIDGLGVPIDDKG-PLAIREEYPIYANPVNPMKRRPIR  140
            G  +   R++  + VG +LLGRVIDG+G P+D++  P   + +Y   A P  +M R+PI 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPIT  136

Query  141  QPLDLGIRAINALLTCGEGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGREL  200
            QPL  GIRAI+++ TCGEGQRVGI +++GVGKSTLL+M+    +AD NV+ LIGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  201  REFIEKDLQEEGLKKSVVVVATSDQPPLVRMRGAYIATTIAEYFQAQGKKVLLMMDSATR  260
            REFI+  L EE  K+ V+VVATSD+P+L R+R+ ++ATTIAE+F+ +GK+V+L+ DS TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  261  FAMAMREVGLAIGEPPTTKGYTPSVFAALPKLLERTGSFLDGSITGLYTVLVEGDDFNEP  320
            +A A RE++LA GE + +  Y P+VF+ALP+LLERTG    GSIT++YTVLVEGDD NEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  321  ISDAMRSILDGHIVLNRELAARAIYPPLDILASASRVMNDVTERSQQQFASRFKELLAAY  380
            ++D +RS+LDGHIVL+R LA R+ YP++D+LA+ SRV   VT + ++Q+A+ ++  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  381  RQAEDLINIGAYKPGSNPTIDYAIAKMDGMVNFIRQGIHDGVSMEQSIAELADIFDE  437
            ++ E LI IG Y+ G +   D AI    ++  F+RQ+ ++  + E  I  L +I+ E
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

342) fliI in NC_002939


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  308 bits (1155),  Expect = 5e-85, Method: Compositional matrix adjust.
 Identities = 197/417 (48%), Positives = 294/417 (71%), Gaps = 6/417 (1%)

Query  22   HGKVTQVVGLVIEGFCPDAAVGTLCLVHPNDGDPIPAEVVGFRDNKTLLMPLGELRGVGL  81
             G++ +V + ++++  P+  +G LC + P +     AEVVG+ ++K+LL P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHC  78

Query  82   GSLISVKRKKASLGVGPGLLGRVIDGLGVPIDDKG-PLAIREEYPIYANPVNPMKRRPIR  140
            G  +   R++  + VG +LLGRVIDG+G P+D++  P   + +Y   A P  +M R+PI 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPIT  136

Query  141  QPLDLGIRAINALLTCGEGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGREL  200
            QPL  GIRAI+++ TCGEGQRVGI +++GVGKSTLL+M+    +AD NV+ LIGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  201  REFIEKDLQEEGLKKSVVVVATSDQPPLVRMRGAYIATTIAEYFQAQGKKVLLMMDSATR  260
            REFI+  L EE  K+ V+VVATSD+P+L R+R+ ++ATTIAE+F+ +GK+V+L+ DS TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  261  FAMAMREVGLAIGEPPTTKGYTPSVFAALPKLLERTGSFLDGSITGLYTVLVEGDDFNEP  320
            +A A RE++LA GE + +  Y P+VF+ALP+LLERTG    GSIT++YTVLVEGDD NEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  321  ISDAMRSILDGHIVLNRELAARAIYPPLDILASASRVMNDVTERSQQQFASRFKELLAAY  380
            ++D +RS+LDGHIVL+R LA R+ YP++D+LA+ SRV   VT + ++Q+A+ ++  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  381  RQAEDLINIGAYKPGSNPTIDYAIAKMDGMINFIRQGIHDGVSMEQSIAELADIFDE  437
            ++ E LI IG Y+ G +   D AI    ++  F+RQ+ ++  + E  I  L +I+ E
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

343) fliI in NC_007498


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  308 bits (1154),  Expect = 5e-85, Method: Compositional matrix adjust.
 Identities = 197/416 (48%), Positives = 288/416 (70%), Gaps = 8/416 (1%)

Query  17   SGKITQIVGLVVEGYCPAATVGTLCELMPRDGGTPVPAEVVGFRDSRALLMPLGELRGLG  76
             G+I ++ + ++++  P+  +G LC + P +      AEVVG+ +S+ALL P+    GL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  77   PGSRIRVVSNSATLPVGRELLGRVIDAMGQPIDDGPLPVRETDMPLY-ALPAGPMERDTI  135
             G ++  +     +PVG  LLGRVID+ G+P+D+  LP  E     Y A+P+ +M R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP--EVCWKDYDAMPPPAMVRQPI  135

Query  136  DTPLDLGIRAINGLLTCGQGQRMGIMAGSGVGKSTLLGMIAQNTQADVNVIALIGERGRE  195
              PL  GIRAI+++ TCG+GQR+GI +++GVGKSTLL+M+ +  +AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  196  VREFIERDLGPEGLARSVVIVATSDQSPLLRMRGAFVATTVAEYFSSQGLNVLLMMDSVT  255
            VREFI+  L+ E   R V++VATSD+++L R+R+ FVATT+AE+F  +G  V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  256  RFAMAMREVGLAIGEPPTTKGYTPSVFATLPKLLERAGSFRNSGSITGLYTVLVEGDDMN  315
            R+A A RE++LA GE + +  Y P+VF++LP+LLER+G   + GSIT++YTVLVEGDDMN
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  316  EPIADAVRSILDGHIVLSRRLAAKNHYPCIDILHSASRVMNAVVDPGHQDLAGRLREILA  375
            EP+AD VRS+LDGHIVLSRRLA + HYP ID+L + SRV   V    H++LA+ LR  LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  376  TYEEAEDLINIGAYKKGSNPKIDTALSHIDNVLRFLRQRVSEAVDLSTTLDQLNDL  431
             Y+E E LI IG Y++G +   D A+    ++  FLRQ   E  +    +++L+++
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

344) fliI in NC_004193


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  308 bits (1154),  Expect = 5e-85, Method: Compositional matrix adjust.
 Identities = 196/423 (47%), Positives = 297/423 (71%), Gaps = 9/423 (2%)

Query  13   DTYKRYGKVIRVVGLMIESEGPTANIGEVCNIKTSANTDHALLAEVVGFRNEKIILMPYT  72
            D Y R G++  V + ++++  P   +GE+C IK + +     LAEVVG+   K +L P+T
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGINGSKALLSPFT  71

Query  73   EVTEVGPGCLVEATGKPLTvkvgrglvgkvlNSLGKPLNDTEELPK-GLANFMTEQTPPN  131
              + +  G  V A  +   V VG +L+G+V++++G+PL D  ELP     ++  +  PP 
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPL-DGRELPEVCWKDY--DAMPPP  128

Query  132  PLERPPIRTPLQVGVKAIDSLLTMGEGQRVGLFAGSGVGKSTLLGMIARNSSAEINVIAL  191
            ++ R PI  PL  G++AIDS+ T GEGQRVG+F+++GVGKSTLL+M+   + A+ NV+ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  192  IGERGREVREFIENDLGPEGLKKSIVVVATSDQPALMRIKGAYTATAISEYFRDLGYKVN  251
            IGERGREVREFI+  L+ E  K+ ++VVATSD+PAL R+++ + AT+I+E+FRD G +V 
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  252  LMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFSILPKLLERTGTNANGTITGFYTVLV  311
            L+ DS+TR A A REI+LA GE + +  Y P+VFS LP+LLERTG   +G+IT+FYTVLV
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLV  308

Query  312  DGDDMNEPIADAVRGILDGHFILDRKLAERGQFPAINVLKSISRVMNVIADEEHKEQSQT  371
            +GDDMNEP+AD VR++LDGH++L R+LAERG++PAI+VL ++SRV  V++ +EH++ +  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  LRKLLSTYEENQELITIGAYKKGTNHEIDQAISFQPYILEFLKQGIHEKRTFDETIQMMK  431
            LR+ L+ Y+E + LI IG Y++G + + D+AI   P I  FL+Q+ +E    +  I+ + 
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

Query  432  NLL  434
            ++L
Sbjct  429  QIL  431

345) Calhy_0586 in NC_014652


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  308 bits (1153),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 210/433 (49%), Positives = 304/433 (71%), Gaps = 7/433 (1%)

Query  1    MIEKLKSKIENANFYQFTGFVNQVIGLTIESQGPAVSIGTLCRIKAAKTETLAEVVGFKE  60
            ++++L+ K   ++ Y   G +++V +  +++  P+V +G LC IK++  E LAEVVG++ 
Sbjct  5    LMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPG--EELAEVVGING  62

Query  61   NKVLLMPYSDLVGVFPGCKVIAQDSMFEVKVGKELLGRILDGLGQPIDGKG--EIKSKIK  118
            +K LL P++   G+  G +V+A     +V VG  LLGR++DG+G+P+DG+   E+  K  
Sbjct  63   SKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK-D  121

Query  119  YPVENRAPNPLERPRIDTIMPLGIKAIDALLTIGKGQRVGIFAGSGVGKSTLLGMIARNA  178
            Y  +  +P ++ R  I   +  GI+AID++ T G GQRVGIF+++GVGKSTLL+M+   +
Sbjct  122  Y--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAP  179

Query  179  KADVNVLALIGERGRelkeflekdlkeeglkRSVVVVATSDESALKRVKAAYVAMAIAEY  238
             AD NVL LIGERGRE++EF++  L EE  KR V+VVATSD +AL RV+A +VA +IAE+
Sbjct  180  DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEF  239

Query  239  FRDQGLDVLFLMDSLTRFAMAQREIGLAVGEPPVSRGYTPSVFSVMPKLLERAGKNKRGS  298
            FRD+G  V++L DSLTR+A A REI+LA GE +VS  Y P+VFS +P+LLER+G   +GS
Sbjct  240  FRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGS  299

Query  299  ITALFTVLVDGDDFNEPITDTARGILDGHIVLSRAIANKNHYPAIDVLASISRVMNDIVE  358
            ITA++TVLV+GDD NEP++D  R++LDGHIVLSR +A++ HYPAIDVLA++SRV   +  
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  359  PSHRELANETKRVLAVYRETEDLINIGAYTKGSNPEIDRAIELVPRINQFLRQEVDERFD  418
              HR+LA   +R LA+Y+E E LI IG Y +G + + D+AI+  P I  FLRQ  DE  +
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  419  FEEEIEMLKAIIS  431
             E  IE L  I++
Sbjct  420  PELLIEKLHQILT  432

346) fliI in NC_010723


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  307 bits (1150),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 191/381 (51%), Positives = 274/381 (72%), Gaps = 7/381 (1%)

Query  41   FVGELCIIYNEKDIPINCEVVGFKDGFVVLMPLDELIGISPGCRVVPMRKPLSVRCSDKL  100
            F+GELC I    +++   EVVG++++  +L P+    G+  G +V+++R+   V  ++ L
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  101  LGEIIDGLGKPLRGEELVEG--EDYPLENNPPDPLKRKRIKEIMPTGIRAIDGFLTCGDG  158
            LG +IDG+G+PL G EL E    DY  +  PP ++ R+ I + + TGIRAID+  TCG+G
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  159  QRIGIFAGSGVGKSTTLGMIAREAKADVNVIALIGERGREVLEFIEKDLGPEGMKKSVVV  218
            QR+GIF+++GVGKST L+M+   + AD NV+ LIGERGREV EFI+  L+ E  K+ V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  219  CATSDKPALIRLKGALTATAIAEYFRDKGKKVILMMDSVTRFAMAQREVGLAIGEPPATK  278
             ATSD+PAL R+++ + AT+IAE+FRD+GK+V+L+ DS+TR+A A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  279  GYTPSVFAKLPKLMERSGTSEDGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRSL  338
             Y P+VF+ LP+L+ER+G +E GSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  339  AHKNHYPAIDILNSVSRLMNSIAPPEHIQAASIARDLLATYKESEDLINIGAYVKGSNKK  398
            A++ HYPAID+L ++SR+   +++ EH Q A+I R  LA Y+E E LI IG Y +G +  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  399  IDLAISYHDKIEEFLRQTVNE  419
             D AI     I  FLRQ+ +E
Sbjct  396  TDKAIDTYPDICTFLRQSKDE  416

347) STHERM_c09130 in NC_014484


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  307 bits (1150),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 206/418 (50%), Positives = 300/418 (72%), Gaps = 10/418 (2%)

Query  17   CR-GRVKAVQGMRIEGQGPLAVVGELCRIHPPDDPDAGIWAEVIGLKGSTVYLMGYRDPE  75
            CR GR++ V +  +++  P   +GELC I P ++      AEV+G++GS   L  +    
Sbjct  20   CRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSPFTSTA  74

Query  76   GIQVGDVIEAMGEPLSIRVSEGLLGRVLDARGMPIDDKGPLPPGIRYPVQGGPPHVLKRR  135
            G++ G+ + A+     + V+E+LLGRV+D+ G P+D++  LP   +   ++ PP  + R+
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQ  133

Query  136  RIEEQIATGIRALDGLLPIGKGQRvgvfsgsgvgksTLLGMVARNTNADVNVIALIGERG  195
             I + + TGIRA+D++   G GQRVG+FS++GVGKSTLL+M+    +AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  196  REVAEFIEHDLGEEGLKRSVVVVSTSDTPAVARYRGAFVAVAIAEYFRDQGKDVMLLFDS  255
            REV EFI+  L+EE  KR V+VV+TSD PA+ R R+ FVA +IAE+FRD+GK V+LL DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  256  ITRFARALREMGLALGESPATRGYPPSVFSTLPKLLERCGTSEKGTITGFFSVLVEGDDM  315
            +TR+ARA RE++LA GE++ +  YPP+VFS+LP+LLER G +EKG+IT+F++VLVEGDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  316  DEPVSDAVRGILDGHVVLSRRLAQRQHYPAIDVLSSVSRLAPKITTPPVRDAARRVMRWL  375
            +EP++D VR++LDGH+VLSRRLA+R HYPAIDVL+++SR+ P +T+   R+ A  + R+L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  376  AAYQETEDLINVGAYARGSNPEVDKAIEKLPDINAFLRQEIEE---RAPLAETIHRLF  430
            A YQE E LI +G Y RG + + DKAI+  PDI +FLRQ  +E      L E +H+++
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

348) COB47_1951 in NC_014392


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  307 bits (1149),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 209/434 (49%), Positives = 307/434 (71%), Gaps = 7/434 (1%)

Query  3    DMLEKLKSKVENTNFYQFTGFVNQVIGLTIESQGPAVSIGTLCRIKAVKTETLAEVVGFK  62
            +++++L+ K    + Y   G +++V +  +++  P+V +G LC IK+   E LAEVVG++
Sbjct  4    ELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKP--GEELAEVVGIN  61

Query  63   DNKVLLMPYSDLVGVFPGCKVIAQDSIFEIKVGNELLGRILDGLGQPIDGKG--EIKSKI  120
            ++K LL P++   G+  G +V+A     ++ VG+ LLGR++DG+G+P+DG+   E+  K 
Sbjct  62   GSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK-  120

Query  121  KYPVENRAPNPLERPRIDTIMPLGIKAIDALLTIGRGQRVGIFAGSGVGKSTLLGMIARN  180
             Y  +  +P ++ R  I   +  GI+AID++ T G GQRVGIF+++GVGKSTLL+M+   
Sbjct  121  DY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNA  178

Query  181  AKADVNVLALIGERGRelkeflekdlkeeglkRSVVVVATSDESALKRVKAAYVAMAIAE  240
            + AD NVL LIGERGRE++EF++  L EE  KR V+VVATSD +AL RV+A +VA +IAE
Sbjct  179  PDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE  238

Query  241  YFRDQGLDVLFLMDSLTRFAMAQREIGLAIGEPPVSRGYTPSVFSIMPKLLERAGKNQKG  300
            +FRD+G  V++L DSLTR+A A REI+LA GE +VS  Y P+VFS +P+LLER+G  +KG
Sbjct  239  FFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKG  298

Query  301  SITALFTVLVDGDDFNEPITDTARGILDGHIVLSRAIANKNHYPAVDVLASISRVMNDIV  360
            SITA++TVLV+GDD NEP++D  R++LDGHIVLSR +A++ HYPA+DVLA++SRV   + 
Sbjct  299  SITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVT  358

Query  361  ESSHRELANETKRILAVYREAEDLINIGAYTKGSNPEIDRAIELVPRINQFLRQDVDerf  420
               HR+LA   +R LA+Y+E E LI IG Y +G + + D+AI+  P I  FLRQ  DE  
Sbjct  359  SHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

Query  421  efeeeieMLRNIIS  434
              E  IE L++I++
Sbjct  419  GPELLIEKLHQILT  432

349) Ethha_2575 in NC_014828


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  307 bits (1149),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 190/395 (49%), Positives = 279/395 (71%), Gaps = 7/395 (1%)

Query  18   RGRVERVTGLSVESVGPAVRIGEVCRIFPNTGGRPVMAEVVGFRDKSMLLMPYDNLQGVG  77
            +GR++ V++  +++  P+V +GE+C I P       +AEVVG+ +   LL P+ +  G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  78   PGSVVESTGHSFYVPVGMDMVGRVLDGVGTPIDGKG-PIASEAHYLIDVEPANPLQRPRI  136
             G  V +  +   VPVG  ++GRV+DG G P+DG+  P     +Y  D  P+ ++ R  I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPI  135

Query  137  KERMPLGVKVIDGLLTCGKGQRIGIFAGSGVGKSTLMGMIARNAQADVNVIALVGERGRE  196
             + +  G++ ID++ TCG GQR+GIF+++GVGKSTL++M+   ++AD NV+ L+GERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  197  LRDFMEKDLQAEGMARTVLVVATSDRPAMARVKCALVATAVAEFFRDKGKNVMLMMDSLT  256
            +R+F++  L  E   R V+VVATSDRPA+ RV+  +VAT++AEFFRD+GK V+L+ DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  257  RFAMAQREIGLATGEPPVARGYTPSIFAVMPKLLERSGNFNKGSITGIYTVLVEGDDMNE  316
            R+A A REI+LA+GE +V+  Y P++F+ +P+LLER+G  +KGSIT++YTVLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  317  PVADTVRGILDGHIVLTRALAMRNHYPAIDVLASISRLMPDIADPAHMELAGKMRRLMAT  376
            P+AD VR++LDGHIVL+R LA R HYPAIDVLA++SR+ P ++   H +LA+ +RR +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  377  YENYADLISIGAYKPGSSEEVDTAIRYHKAIETFL  411
            Y++   LI IG Y+ G   + D AI     I TFL
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

350) NT01CX_1905 in NC_008593


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  307 bits (1149),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 190/399 (48%), Positives = 288/399 (73%), Gaps = 8/399 (2%)

Query  42   FVGEVCTIYNKENEPIMCEVVGFKEDNVILMPLGELIGIGPGCKVVPSKKYLSVKCSDDL  101
            F+GE+C I  K  E +  EVVG++  + +L P+    G+  G +V++ ++   V  ++ L
Sbjct  41   FMGELCCI--KPGEELA-EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  102  LGKVLNGLGKPLKSEEELPIGV--DYPLDTAPPDPLKRRRIKDEIATGVRAVDGFLTCGE  159
            LG+V++G+G+PL + E LP     DY  D+ PP ++ R+ I + + TG+RA+D+  TCGE
Sbjct  98   LGRVIDGFGRPLDGRE-LPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGE  154

Query  160  GQRIGIFAGSGVGKSTTLGMIAREAKADINVIALIGERGREVLDFIEKDLGEEGLKKSVI  219
            GQR+GIF+++GVGKST L+M+   + AD NV+ LIGERGREV +FI+  L+EE  K+ VI
Sbjct  155  GQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVI  214

Query  220  VCATSDQPALVRLKGAFTATAIAEYFRDKGKKVILMMDSVTRFAMAQREVGLAIGEPPAT  279
            V ATSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A RE++LA GE + +
Sbjct  215  VVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVS  274

Query  280  KGYTPSVFAMLPRLMERSGMSDKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRA  339
              Y P+VF+ LPRL+ER+GM++KGSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR 
Sbjct  275  GEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  340  LAGKNHYPAIDILNSVSRLMSEIATDEHKKAASLARDLLATYKNSEDLINIGAYVRGSNP  399
            LA + HYPAID+L ++SR+ + ++++EH++ A++ R  LA Y++ E LI IG Y RG + 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  400  KVDMAIQYNDELNDYLRQGIKEHSEFQESVTRLVNMFNN  438
              D AI+   ++  +LRQ+  E    +  + +L +++ +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

351) Tmar_0981 in NC_014831


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  307 bits (1152),  Expect = 7e-85, Method: Compositional matrix adjust.
 Identities = 211/412 (52%), Positives = 300/412 (73%), Gaps = 5/412 (1%)

Query  46   GWVEQVVGLAVEARGPVSSLGELCWIHRAGLPPVPAEVVGFRGPHTLLMPLGDARAIRPG  105
            G++++V +  ++A+ P   +GELC I  +      AEVVG+ G+ +LL P+  + +++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGE---ELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  106  SLVEATGRGFTVgvgegllgrvldglgrpldgQGPVAVEAWYPAEGEPPPPLARQPIREP  165
              V A  R   V VGE+LLGRV+DG+GRPLDG+    V  W   ++ PPP++ RQPI +P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV-CWKDYDAMPPPAMVRQPITQP  138

Query  166  LPVGVRSIDALLTCGRGQRVGIFAGSGVGKSTLLAMMTRHTAADVVVVALIGERNREVRD  225
            L  G+R+ID++ TCG GQRVGIF+++GVGKSTLLAM+     AD  V+ LIGER REVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  226  FVDHHLAG-SRRRTVVVAATADRPALVRIKAAQVATAIAEFFRDRGRHVLLVMDSVTRYA  284
            F+D  L+  +R+R V+V AT+DRPAL R++A  VAT+IAEFFRD G++V+L+ DS+TRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  285  MALREVGLAVGEPPATRGYPPSVFAALPRLLERAGTGPRGSITGFYTVLVDGDDLNEPIA  344
             A RE++LA GE + +  YPP+VF+ALPRLLER+G G +GSIT+FYTVLV+GDD+NEP+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  345  DAVRGTLDGHIVLSRQLAEEGQFPAVDVLASVSRLMPELVEPAHWAAAQRLRRWLGAYRE  404
            D VR+ LDGHIVLSR+LAE G++PA+DVLA++SR+ P +    H+  A  LRR+L+ Y+E
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  405  ARDLLEIGAYQRGSNPDVDRALERMPAIRAFLTQGRDEASPFAEAVARLQEV  456
               L+ IG YQRG + D D+A++  P I +FL Q++DE       + +L+++
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

352) Desor_4887 in NC_016584


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  307 bits (1151),  Expect = 8e-85, Method: Compositional matrix adjust.
 Identities = 194/394 (50%), Positives = 281/394 (72%), Gaps = 3/394 (0%)

Query  11   VGEYCHIITRDGRELPAEVVGFRDSTTLLMPLGELEGISPGDCVLSQRQKLTVPVGPSLL  70
            +GE C I  + G EL AEVVG+ +S +LL P+    G+  G+ V++ R++  VPVG +LL
Sbjct  42   MGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  71   GRILDGLGYPLDGRPLKTEISYPLHNKPPNALLRPRILESLSVGVRPIDGMLTIGRGQRM  130
            GR++DG+G PLDGR L        +  PP A++R  I ++L  G+R+ID++ T G GQR+
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  131  GIFAGSGVGKSTLLGMMARNTVADINVIALIGERGRELRDFIEKDLGPEGLARSVIIVAT  190
            GIF+++GVGKSTLL+M+     AD NV+ LIGERGRE+R+FI+  L+ E   R VI+VAT
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  191  SDQPALVRLKAAFTATAVAEYFRDNGQNVLLMMDSVTRFAMAQREVGLTVGEPPATRGYP  250
            SD+PAL R++A F AT++AE+FRDNG+ V+L+ DS+TR+A A RE++L+ GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  251  PSVFALLPKLLERSGMAEIGSITGIYTVLVDGDDHNEPIADSVRGILDGHIVLTRELAMQ  310
            P+VF+ LP+LLER+GM+E GSIT++YTVLV+GDD NEP+AD VR++LDGHIVL+R LA +
Sbjct  279  PGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAER  338

Query  311  NQFPAIDILQSVSRVMNDVVSQEQLELAGKVREHIAVYRDAKDLIDIGAYTPGSNPKIDA  370
             ++PAID+L ++SRV   V S+E+ +LA+ +R ++A+Y++   LI IG Y  G +   D 
Sbjct  339  GHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDK  398

Query  371  AIAHMDRILAFNRQRVDEQVKYEEMLQHLKGIFG  404
            AI     I +F RQ  DE    E +++ L  I+ 
Sbjct  399  AIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

353) H045_00170 in NC_020209


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  307 bits (1152),  Expect = 8e-85, Method: Compositional matrix adjust.
 Identities = 208/418 (50%), Positives = 307/418 (74%), Gaps = 12/418 (2%)

Query  29   RGRVQRVNGMLLQCRLPNARIGDLCQVEKSVDDHMLAEIIGFDQQDAVLSALGNLEGVRV  88
            +GR+Q V++ LL+ +LP   +G+LC + K+ ++  LAE++G++   A+LS++ +  G++ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCI-KPGEE--LAEVVGINGSKALLSPFTSTAGLHC  78

Query  89   GASVQRLGVSHRVLVGDELLGQVLDGFGRPISGVGPSAFVEVDSPDASMVLCEAPLPTER  148
            G  V  L   H+V VG+ LLG+V+DGFGRP+ G     + EV   D   +   +P +  R
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG---RELPEVCWKDYDAM---PPPAMVR  132

Query  149  PRIHRALATGVRSIDGLLTLGEGQRVGLFAGAGCGKTTLLAEIARNVECDVIVFGLIGER  208
              I ++L TG+R+ID++ T GEGQRVG+F+++G GK+TLLA +    + D  V+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  209  GRELREFLDHELDDQLRAKAVLVCATSDRSSMEraraaftatalaEGYRRKGKRVLLLID  268
            GRE+REF+D  L ++ R + V+V ATSDR+++ER RA F AT++AE +R +GKRV+LL D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  269  SLTRFARAQREIGLAAGEPLGRGGLPPSVYSLLPRLVERAGLTQNGVITAIYTVLIEQDS  328
            SLTR+ARA REI+LAAGE    G  PP+V+S LPRL+ER+G+ ++G ITA+YTVL+E D 
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  329  MSDPVADEVRSLLDGHIVLSRKLAERGHYPAVDVLASLSRILSNVATPEHIQAGTALRRL  388
            M++P+ADEVRSLLDGHIVLSR+LAERGHYPA+DVLA+LSR+++ V++ EH Q ++ LRR 
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  389  LSAYQQIELMLKLGEYQPGSDALTDMAVDTRSRVDGFLRQ---DLREPALMDSTLDQL  443
            L+ YQ++EL++++GEYQ G D+ TD A+DT + +  FLRQ   ++  P L+   L+Q+
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

354) GM18_4265 in NC_014973


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  307 bits (1152),  Expect = 8e-85, Method: Compositional matrix adjust.
 Identities = 191/400 (48%), Positives = 285/400 (72%), Gaps = 6/400 (1%)

Query  21   HGKVTQVVGLVIEGFCPETAVGSVCEVHSEGHAPIPAEVVGFRDNKTLLMPLGELRGVGL  80
             G++ +V + ++++  P   +G +C + +  +    AEVVG+ ++K+LL P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  81   GSVISVRREKAALGVGPALLGRVIDGLGEPIDDKGPIEVV-DEYPIYALPVNPMKRRPIR  139
            G  +   R +  + VG ALLGRVIDG+G P+D++   EV   +Y   A+P  +M R+PI 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPIT  136

Query  140  KPLNLGIRAINGLLTCGEGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGREL  199
            +PL  GIRAI+++ TCGEGQRVGI +++GVGKSTLL+M+    +AD NV+ LIGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  REFIEKDLQAEGLRKSVVVVATSDQPPLVRMRGAYIATTIAEYFQAQGKKVLLMMDSATR  259
            REFI+  L  E  ++ V+VVATSD+P+L R+R+ ++ATTIAE+F+ +GK+V+L+ DS TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  FAMAMREVGLAIGEPPTTKGYTPSVFAALPRLLERTGNFQGGSITGLYTVLVEGDDFNEP  319
            +A A RE++LA GE + +  Y P+VF+ALPRLLERTG  + GSIT++YTVLVEGDD NEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  320  ISDAMRSILDGHIILTRELAARNIYPPIDLLNSASRVMSDVTSREHRALAGQFKETLATY  379
            ++D +RS+LDGHI+L+R LA R  YP+ID+L + SRV + VTS+EHR LA+ ++  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  380  RQAEDMINIGAYKAGSNAKIDMAIAKMEQMIAYLKQDVAD  419
            ++ E +I IG Y+ G ++  D AI    ++ ++L+Q   +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

355) Spith_0938 in NC_017583


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  307 bits (1151),  Expect = 9e-85, Method: Compositional matrix adjust.
 Identities = 207/419 (50%), Positives = 300/419 (72%), Gaps = 10/419 (2%)

Query  17   CR-GRVKAVQGMRIEGQGPLAVVGELCRIHPPDDPDAGIWAEVIGLKGSTVYLMGYQDPE  75
            CR GR++ V +  +++  P   +GELC I P ++      AEV+G++GS   L  +    
Sbjct  20   CRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSPFTSTA  74

Query  76   GIQVGDVIEAMGEPLSIRVSEGLLGRVLDARGMPIDDKGPLPPGIRYPVQGGPPHVLKRR  135
            G++ G+ + A+     + V+E+LLGRV+D+ G P+D++  LP   +   ++ PP  + R+
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQ  133

Query  136  RIEEQIATGIRALDGLLPIGKGQRvgvfsgsgvgksTLLGMVARNTNADVNVIALIGERG  195
             I + + TGIRA+D++   G GQRVG+FS++GVGKSTLL+M+    +AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  196  REVAEFIEHDLGEEGLKRSVVVVSTSDTPAVARYRGAFVAVAIAEYFRDQGKDVMLLFDS  255
            REV EFI+  L+EE  KR V+VV+TSD PA+ R R+ FVA +IAE+FRD+GK V+LL DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  256  VTRFARALREIGLALGESPATRGYPPSVFSTLPKLLERCGTSEKGTITGFFSVLVEGDDM  315
            +TR+ARA REI+LA GE++ +  YPP+VFS+LP+LLER G +EKG+IT+F++VLVEGDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  316  DEPVSDAVRGILDGHVVLSRRLAQRQHYPAIDVLSSVSRLAPKITTPPVREAARRVLRWL  375
            +EP++D VR++LDGH+VLSRRLA+R HYPAIDVL+++SR+ P +T+   R+ A  + R+L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  376  AAYQETEDLINVGAYARGSNPEVDKAIEKLPDINAFLRQEIEE---RAPLAETIHRLFG  431
            A YQE E LI +G Y RG + + DKAI+  PDI +FLRQ  +E      L E +H+++ 
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

356) Calkro_0465 in NC_014720


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  306 bits (1148),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 210/433 (49%), Positives = 304/433 (71%), Gaps = 7/433 (1%)

Query  1    MIEKLKSKIENANFYQFTGFVNQVIGLTIESQGPAVSIGTLCRIKAAKTETLAEVVGFKE  60
            ++++L+ K   ++ Y   G +++V +  +++  P+V +G LC IK++  E LAEVVG++ 
Sbjct  5    LMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPG--EELAEVVGING  62

Query  61   NKVLLMPYSDLVGVFPGCKVIAQDSMFEVKVGKELLGRILDGLGQPIDGKG--EIKSKIK  118
            +K LL P++   G+  G +V+A     +V VG  LLGR++DG+G+P+DG+   E+  K  
Sbjct  63   SKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK-D  121

Query  119  YPVENRAPNPLERPRIDTIMPLGIKAIDTLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA  178
            Y  +  +P ++ R  I   +  GI+AID++ T G GQRVGIF+++GVGKSTLL+M+   +
Sbjct  122  Y--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAP  179

Query  179  KADVNVLALIGERGRelkeflekdlkeeglkRSVVVVATSDESALKRVKAAYVAMAIAEY  238
             AD NVL LIGERGRE++EF++  L EE  KR V+VVATSD +AL RV+A +VA +IAE+
Sbjct  180  DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEF  239

Query  239  FRDQGLDVLFLMDSLTRFAMAQREIGLAIGEPPVSRGYTPSVFSIMPKLLERAGKNQKGS  298
            FRD+G  V++L DSLTR+A A REI+LA GE +VS  Y P+VFS +P+LLER+G  +KGS
Sbjct  240  FRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGS  299

Query  299  ITALFTVLVDGDDFNEPITDTARGILDGHIVLSRAIANKNHYPAIDVLASISRVMNDIVE  358
            ITA++TVLV+GDD NEP++D  R++LDGHIVLSR +A++ HYPAIDVLA++SRV   +  
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  359  PFHRDLANETKRVLAVYREAEDLINIGAYTKGSNPEIDRAIELVPRINQFLRQDVDERFE  418
              HR+LA   +R LA+Y+E E LI IG Y +G + + D+AI+  P I  FLRQ  DE   
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  419  FEEEIDMLKAIIS  431
             E  I+ L  I++
Sbjct  420  PELLIEKLHQILT  432

357) fliL in NC_003030


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  306 bits (1147),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 191/395 (49%), Positives = 280/395 (71%), Gaps = 3/395 (0%)

Query  41   FVGEVCIIYNERNRPIKCEVVGFNEGRVILMPLGELEGISPGCRVVQTGIPLSVKCSDEL  100
            F+GE+C I    + +   EVVG+N ++ +L P+    G+  G +V+       V  ++ L
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  101  LGKVLDGLGAPLRGEEVKSGVLYQLDREPPDPLKRRRIKNSIETGVRAIDGFLTCGEGQR  160
            LG+V+DG+G PL G E+      + D  PP ++ R+ I +++ TG+RAID+  TCGEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  161  IGIFAGSGVGKSTTLGMIAREAKADVNVIALIGERGREVLDFIEKDLGEEGMKRSVIVCA  220
            +GIF+++GVGKST L+M+   + AD NV+ LIGERGREV +FI+  L+EE  KR VIV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  221  TSDKPALVRLKGAFTATAIAEYFRDKGKKVILMMDSVTRFAMAQREVGLATGEPPATKGY  280
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A RE++LA+GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  281  TPSVFAMLPRLMERSGMAETGSITAFYTVLVDGDDFNEPIADAVRSILDGHIVLSRNLAA  340
             P+VF+ LPRL+ER+GM+E GSITAFYTVLV+GDD NEP+AD VRS+LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  341  QNHYPAIDVLSSVSRLMSEIADSDHKKAAGLARDLLAEYKKNEDLINIGAYVKGTNNKVD  400
            + HYPAIDVL+++SR+ + ++  +H++ A++ R  LA Y+  E LI IG Y +G +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  401  AAINYNDRIISYLKQGIEEKSSFEESINSLKSMFN  435
             AI+    I ++L+Q+ +E  + E  I+ L  ++ 
Sbjct  398  KAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

358) fliI in NC_015687


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  306 bits (1147),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 191/395 (49%), Positives = 280/395 (71%), Gaps = 3/395 (0%)

Query  41   FVGEVCIIYNERNRPIKCEVVGFNEGRVILMPLGELEGISPGCRVVQTGIPLSVKCSDEL  100
            F+GE+C I    + +   EVVG+N ++ +L P+    G+  G +V+       V  ++ L
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  101  LGKVLDGLGAPLRGEEVKSGVLYQLDREPPDPLKRRRIKNSIETGVRAIDGFLTCGEGQR  160
            LG+V+DG+G PL G E+      + D  PP ++ R+ I +++ TG+RAID+  TCGEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  161  IGIFAGSGVGKSTTLGMIAREAKADVNVIALIGERGREVLDFIEKDLGEEGMKRSVIVCA  220
            +GIF+++GVGKST L+M+   + AD NV+ LIGERGREV +FI+  L+EE  KR VIV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  221  TSDKPALVRLKGAFTATAIAEYFRDKGKKVILMMDSVTRFAMAQREVGLATGEPPATKGY  280
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A RE++LA+GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  281  TPSVFAMLPRLMERSGMAETGSITAFYTVLVDGDDFNEPIADAVRSILDGHIVLSRNLAA  340
             P+VF+ LPRL+ER+GM+E GSITAFYTVLV+GDD NEP+AD VRS+LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  341  QNHYPAIDVLSSVSRLMSEIADSDHKKAAGLARDLLAEYKKNEDLINIGAYVKGTNNKVD  400
            + HYPAIDVL+++SR+ + ++  +H++ A++ R  LA Y+  E LI IG Y +G +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  401  AAINYNDRIISYLKQGIEEKSSFEESINSLKSMFN  435
             AI+    I ++L+Q+ +E  + E  I+ L  ++ 
Sbjct  398  KAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

359) CEA_G2173 in NC_017295


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  306 bits (1147),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 191/395 (49%), Positives = 280/395 (71%), Gaps = 3/395 (0%)

Query  41   FVGEVCIIYNERNRPIKCEVVGFNEGRVILMPLGELEGISPGCRVVQTGIPLSVKCSDEL  100
            F+GE+C I    + +   EVVG+N ++ +L P+    G+  G +V+       V  ++ L
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  101  LGKVLDGLGAPLRGEEVKSGVLYQLDREPPDPLKRRRIKNSIETGVRAIDGFLTCGEGQR  160
            LG+V+DG+G PL G E+      + D  PP ++ R+ I +++ TG+RAID+  TCGEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  161  IGIFAGSGVGKSTTLGMIAREAKADVNVIALIGERGREVLDFIEKDLGEEGMKRSVIVCA  220
            +GIF+++GVGKST L+M+   + AD NV+ LIGERGREV +FI+  L+EE  KR VIV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  221  TSDKPALVRLKGAFTATAIAEYFRDKGKKVILMMDSVTRFAMAQREVGLATGEPPATKGY  280
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A RE++LA+GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  281  TPSVFAMLPRLMERSGMAETGSITAFYTVLVDGDDFNEPIADAVRSILDGHIVLSRNLAA  340
             P+VF+ LPRL+ER+GM+E GSITAFYTVLV+GDD NEP+AD VRS+LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  341  QNHYPAIDVLSSVSRLMSEIADSDHKKAAGLARDLLAEYKKNEDLINIGAYVKGTNNKVD  400
            + HYPAIDVL+++SR+ + ++  +H++ A++ R  LA Y+  E LI IG Y +G +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  401  AAINYNDRIISYLKQGIEEKSSFEESINSLKSMFN  435
             AI+    I ++L+Q+ +E  + E  I+ L  ++ 
Sbjct  398  KAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

360) bscN in NC_002928


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  306 bits (1145),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 210/401 (53%), Positives = 303/401 (76%), Gaps = 7/401 (1%)

Query  25   GRVVQVVGTIIKAVVPMVKIGEVCLLRNPGEDFEMHGEVVGFVRDAALLTPIGDMYGISS  84
            GR+ +V +T+++A +P V +GE+C ++ PGE++   +EVVG+    ALL+P+    G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  85   ATEVIPTGRTHMvpvgpgllgrvldglgrpldVAESGPLHAHKFYPVFADAPDPLTRRII  144
            + +V++  R H VPVG +LLGRV+DG+GRPLD  E   +    + ++   +P ++ R+ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPI  135

Query  145  HAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGRE  204
              PL  G+R +D++ TCGEGQR+GIF+A+G GKSTLL+ML +++  D  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  205  VREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSVT  264
            VREF++  L+ E R++ VIV ATSD++++ER +A +VAT+IAE+FRD+G+RV++L DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  265  RFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMNE  324
            R+ARA REI+LAAGE +    YPP+VF++LP+L+ER+GM + GSITA+YTVLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  325  PVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMAK  384
            P+ADE RS+LDGHIVLSR+L+   HYPA+DVLA+ SRV   V S  H+ LA+ +R  +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  385  YQDVELLVKIGEHKQGADASTDEAIQKIGQINAFLRQLTDE  425
            YQ+VELL++IGE ++G D+ TD AI+   +I +FLRQ  DE
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

361) Bcep1808_5335 in NC_009255


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  306 bits (1145),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 210/415 (51%), Positives = 304/415 (74%), Gaps = 4/415 (0%)

Query  49   GRVNHAVGQILNATGIRARLGEICELRTPNQPTLLAEVVGFSRQTTLLTPLGDVAGLSPE  108
            GR+++  + +LNA      +GE+C ++  ++   LAEVVG++   +LL+P+   AGL   
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  109  TTVVPSGREHVFAVGDALFgrvldglgrplddlgpvTGAAWVSTQQDPPNPLARKLIDTP  168
              V++  R H  +VG+AL+GRV+DG+GRPLD+        W   +  PP ++ R+ I  P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL-PEVCWKDYDAMPPPAMVRQPITQP  138

Query  169  FPTGVRVIDGLMTLGVGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVRE  228
            + TG+R ID++ T G GQRVGIF+++GVGKSTLL+M+  +++AD NV+ L+GERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  229  FIEHSLSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFA  288
            FI+ +LS E R R ++VV+TSDRPA+ERV++ +VAT+IAE FRD GKRV+LL DSLTR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  289  RAQREVGLASGEPPTRRSFPPSTFAVLPRLLERAGQGARGSITALYTVLVEGDEESDPIA  348
            RA RE++LA+GE +    +PP+ F+ LPRLLER+G G +GSITA+YTVLVEGD+ ++P+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  349  EEVRSILDGHIVLSRKIALANRYPAIDVLASLSRVMPLVASRAHQQAAARVRELIAKYQE  408
            +EVRS+LDGHIVLSR++A   +YPAIDVLA+LSRV P+V+S+ H+Q AA +R  +A YQE
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  409  IELLVQIGEYREGSDRLGDLALRARDAIGAFCAQASHEDVRFDALLAKLTRLAND  463
            +ELL++IGEY+ G D   D A+ +   I +F  Q+ +E    + L+ KL ++  +
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

362) Calkr_0409 in NC_014721


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  306 bits (1145),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 205/416 (50%), Positives = 295/416 (71%), Gaps = 7/416 (1%)

Query  1    MIEKLKSKVENANFYQFTGFVNQVIGLTIESQGPAVSIGTLCRIKAAKTETLAEVVGFKE  60
            ++++L+ K   ++ Y   G +++V +  +++  P+V +G LC IK++  E LAEVVG++ 
Sbjct  5    LMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPG--EELAEVVGING  62

Query  61   NKVLLMPYSDLVGVFPGCKVIAQDSIFEVKVGKELLGRILDGLGQPIDGKG--EIKSKIK  118
            +K LL P++   G+  G +V+A     +V VG  LLGR++DG+G+P+DG+   E+  K  
Sbjct  63   SKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK-D  121

Query  119  YPVENRAPNPLERPRIDTIMPLGIKAIDTLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA  178
            Y  +  +P ++ R  I   +  GI+AID++ T G GQRVGIF+++GVGKSTLL+M+   +
Sbjct  122  Y--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAP  179

Query  179  KADVNVLALIGERGRelkeflekdlkeeglkRSVVVVATSDESALKRVKAAYVAMAIAEY  238
             AD NVL LIGERGRE++EF++  L EE  KR V+VVATSD +AL RV+A +VA +IAE+
Sbjct  180  DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEF  239

Query  239  FRDQGLDVLFLMDSLTRFAMAQREIGLAVGEPPVSRGYTPSVFSVMPKLLERAGKNRKGS  298
            FRD+G  V++L DSLTR+A A REI+LA GE +VS  Y P+VFS +P+LLER+G   KGS
Sbjct  240  FRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGS  299

Query  299  ITALFTVLVDGDDFNEPITDTARGILDGHIVLSRAIANKNHYPAIDVLASISRVMNDIVD  358
            ITA++TVLV+GDD NEP++D  R++LDGHIVLSR +A++ HYPAIDVLA++SRV   +  
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  359  PSHRELANETKRVLAVYREAEDLINIGAYTKGSNPEIDRAIELLPRINQFLRQDVD  414
              HR+LA   +R LA+Y+E E LI IG Y +G + + D+AI+  P I  FLRQ  D
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD  415

363) Calla_1952 in NC_015949


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  306 bits (1145),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 205/416 (50%), Positives = 295/416 (71%), Gaps = 7/416 (1%)

Query  1    MIEKLKSKVENANFYQFTGFVNQVIGLTIESQGPAVSIGTLCRIKAAKTETLAEVVGFKE  60
            ++++L+ K   ++ Y   G +++V +  +++  P+V +G LC IK++  E LAEVVG++ 
Sbjct  5    LMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPG--EELAEVVGING  62

Query  61   NKVLLMPYSDLVGVFPGCKVIAQDSIFEVKVGKELLGRILDGLGQPIDGKG--EIKSKIK  118
            +K LL P++   G+  G +V+A     +V VG  LLGR++DG+G+P+DG+   E+  K  
Sbjct  63   SKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK-D  121

Query  119  YPVENRAPNPLERPRIDTIMPLGIKAIDTLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA  178
            Y  +  +P ++ R  I   +  GI+AID++ T G GQRVGIF+++GVGKSTLL+M+   +
Sbjct  122  Y--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAP  179

Query  179  KADVNVLALIGERGRelkeflekdlkeeglkRSVVVVATSDESALKRVKAAYVAMAIAEY  238
             AD NVL LIGERGRE++EF++  L EE  KR V+VVATSD +AL RV+A +VA +IAE+
Sbjct  180  DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEF  239

Query  239  FRDQGLDVLFLMDSLTRFAMAQREIGLAVGEPPVSRGYTPSVFSVMPKLLERAGKNRKGS  298
            FRD+G  V++L DSLTR+A A REI+LA GE +VS  Y P+VFS +P+LLER+G   KGS
Sbjct  240  FRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGS  299

Query  299  ITALFTVLVDGDDFNEPITDTARGILDGHIVLSRAIANKNHYPAIDVLASISRVMNDIVD  358
            ITA++TVLV+GDD NEP++D  R++LDGHIVLSR +A++ HYPAIDVLA++SRV   +  
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  359  PSHRELANETKRVLAVYREAEDLINIGAYTKGSNPEIDRAIELLPRINQFLRQDVD  414
              HR+LA   +R LA+Y+E E LI IG Y +G + + D+AI+  P I  FLRQ  D
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD  415

364) PSEBR_a5386 in NC_015379


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  305 bits (1144),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 210/403 (53%), Positives = 292/403 (73%), Gaps = 13/403 (3%)

Query  29   RGRVQRVSGILLQCRLPGAQIGDLCRVERDTREPLLAEIVGFDQHDALLSALGGLEGIRV  88
            +GR+Q VS+ LL+ +LPG  +G+LC +  +     LAE+VG++   ALLS++ +  G++ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHC  78

Query  89   GAAVEPLGMPHRVCVGPELLGQVLDGFGRPLLDGGTGAFAGPHVLHAS--EVIGEAPAPT  146
            G  V +L   H+V VG  LLG+V+DGFGRPL         G ++ +    +  + +P++ 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPL--------DGRELPEVCWKDYDAMPPPAM  130

Query  147  ARPRIQRPLMTGVRAIDGPLTLGEGQRVGLFAGAGCGKTTLLAEIARNVDCDVIVFGLIG  206
             R  I +PLMTG+RAID+  T GEGQRVG+F+++G GK+TLLA +    D D  V+ LIG
Sbjct  131  VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG  190

Query  207  ERGRELREFLDHELDDELRARAVLVCATSDRSSMEraraaftatalaEGFRARGQRVLLL  266
            ERGRE+REF+D  L +E R R V+V ATSDR+++ER RA F AT++AE FR  G+RV+LL
Sbjct  191  ERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLL  250

Query  267  IDSLTRFARAQREIGLAAGEPLGRGGLPPSVYGLLPRLVERAGLTNEGAITAFYTVLIEQ  326
             DSLTR+ARA REI+LAAGE    G  PP+V++ LPRL+ER+G+ + G+ITAFYTVL+E 
Sbjct  251  ADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEG  310

Query  327  DSMNDPVADEVRSLLDGHIVLSRKLAERGHYPAIDVLASLSRTLANVAEAEHLRAGINLR  386
            D MN+P+ADEVRSLLDGHIVLSR+LAERGHYPAIDVLA+LSR ++ V+  EH + +  LR
Sbjct  311  DDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILR  370

Query  387  RLLSAYEQIELMLRLGEYQAGADPLTDLAVESRGALDAFLRQD  429
            R L+ Y+++EL++R+GEYQ G D  TD A+++   + +FLRQ 
Sbjct  371  RRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

365) PM3016_5159 in NC_016935


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  305 bits (1144),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 187/400 (47%), Positives = 284/400 (71%), Gaps = 7/400 (1%)

Query  24   GKVTQVIGLTVESEGPDASIGDLCYIYPHKSNKPLKAEVVGFKNNKVILMPLGELDSIGP  83
            G++ +V +  +++  P+  +G+LC I   K+   L AEVVG++ +K +L P+    ++  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKALLSPFTSTAGLHC  78

Query  84   GCDVVGTGKPLSVQVGHELLGKVLDGLGQPMDGSFLPS-RMAQYSTNNAPSNPLTRPRVL  142
            G +V++  +   V VG+ LLG+V+DG+G+P+DG  LP     +Y  +  P+ ++ R  + 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPIT  136

Query  143  EPISVGVRCIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTSADVNVIALIGERGREV  202
            +P+  G+R ID++ T G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  203  LDFIERDLGPEGLARSVVIVATSDQPALIRIKASLIATSIAEYFRDRGLNVMMMMDSVTR  262
             +FI+  L+ E   R V++VATSD+PAL R++A ++AT+IAE+FRD G  V+++ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  263  FAMAQREVGLAVGEPPATRGYTPSVFAMLPKLLERSGNGPKGSITAFYTVLVDGDDMNEP  322
            +A A RE++LA GE + +  Y P+VF+ LP+LLER+G G KGSITAFYTVLV+GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  323  IADAVRGILDGHIVLNRAIANRGHYPAIDVLASVSRVMKEIVPKEQQLASENLKRLLATY  382
            +AD VR++LDGHIVL+R +A+RGHYPAIDVLA++SRV   + + E++  +  L+R LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  383  KDSEDLVNIGAYQRGSNPEIDEALESIHSIWDYTKQRTDD  422
            ++ E L+ IG YQRG + + D A+++   I  + +Q  D+
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

366) fliI in NC_017672


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  305 bits (1144),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 187/400 (47%), Positives = 284/400 (71%), Gaps = 7/400 (1%)

Query  24   GKVTQVIGLTVESEGPDASIGDLCYIYPHKSNKPLKAEVVGFKNNKVILMPLGELDSIGP  83
            G++ +V +  +++  P+  +G+LC I   K+   L AEVVG++ +K +L P+    ++  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKALLSPFTSTAGLHC  78

Query  84   GCDVVGTGKPLSVQVGHELLGKVLDGLGQPMDGSFLPS-RMAQYSTNNAPSNPLTRPRVL  142
            G +V++  +   V VG+ LLG+V+DG+G+P+DG  LP     +Y  +  P+ ++ R  + 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPIT  136

Query  143  EPISVGVRCIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTSADVNVIALIGERGREV  202
            +P+  G+R ID++ T G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  203  LDFIERDLGPEGLARSVVIVATSDQPALIRIKASLIATSIAEYFRDRGLNVMMMMDSVTR  262
             +FI+  L+ E   R V++VATSD+PAL R++A ++AT+IAE+FRD G  V+++ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  263  FAMAQREVGLAVGEPPATRGYTPSVFAMLPKLLERSGNGPKGSITAFYTVLVDGDDMNEP  322
            +A A RE++LA GE + +  Y P+VF+ LP+LLER+G G KGSITAFYTVLV+GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  323  IADAVRGILDGHIVLNRAIANRGHYPAIDVLASVSRVMKEIVPKEQQLASENLKRLLATY  382
            +AD VR++LDGHIVL+R +A+RGHYPAIDVLA++SRV   + + E++  +  L+R LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  383  KDSEDLVNIGAYQRGSNPEIDEALESIHSIWDYTKQRTDD  422
            ++ E L+ IG YQRG + + D A+++   I  + +Q  D+
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

367) fliI in NC_005027


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  305 bits (1144),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 192/414 (47%), Positives = 290/414 (71%), Gaps = 7/414 (1%)

Query  33   RGRVASVTGDAVTVQGMTAPLGAICELMPPDAKPTLARVIGFDDTRPILAPMEAISALAA  92
            +GR+  V++  +        +G +C + P +    LA V+G+++++++L+P  + ++L  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHC  78

Query  93   GDrvrlvsrsltlrvGDSLCGRVIDAFGRPIDGKPLSDDLVRVSASRAAPDSLDRPPIDE  152
            G++V  + R   + VG++L GRVID+FGRP+DG+ L++ + +      +P ++ R PI +
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCWKDYDAMPPPAMVRQPITQ  137

Query  153  PLQTGVRAIDAMLTCGVGQRLGIFAGSGVGKSTLLGMLTRGTTADRIVIAMVGERGREVQ  212
            PL TG+RAID++ TCG GQR+GIF+++GVGKSTLL+ML  +  AD  V+ ++GERGREV+
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  213  EFMQRALGAAGLKRSVVVVATSDKPAAQRLSAAWTATAIAEKFRDEGHRVLLLVDSVTRF  272
            EF++ +L+    KR V+VVATSD+PA +R+ A   AT+IAE FRD+G RV+LL DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  273  AMAQRELGLAAGEPPTTRGYPPSVFNMLPQLVERAGRTTKGSITAFYTVLVEGDDNNEPI  332
            A A RE++LAAGE + +  YPP+VF+ LP+L+ER+G   KGSITAFYTVLVEGDD NEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  333  SDTVRGLLDGHIVLNRKLAHRGHYPPIDIPESISRVANHLVTPETYQATLGIREHMVQYQ  392
            +D VR+LLDGHIVL+R+LA+RGHYP+ID+  ++SRV   + + E  Q +  +R ++  YQ
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  393  TSEDLISIGAYRSGSDPRVDTAIAMRDPINDLLRQDANEITPIADSQARVQKLH  446
              E LI IG Y+ G D   D AI     I  +LRQ  +E   + +++  ++KLH
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE---VCGPELLIEKLH  428

368) FliI in NC_009454


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  305 bits (1142),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 196/381 (52%), Positives = 273/381 (72%), Gaps = 6/381 (1%)

Query  44   IGEVCEITVPGEPEPVRAEVVGFRDGSTLLMPLGELKGIYQGCSVTPSGRPFTIKVGEGL  103
            +GE+C I  PGE     AEVVG+ ++ +LL P+    G+  G  V +  R   + VGE+L
Sbjct  42   MGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  104  LGRVLNGLGEPMDGLGPVGGRTENYPVDNRPPNPLKRRRITEVLSTGVRAVDGLLTCGRG  163
            LGRV++G+G P+DG         +Y  D  PP ++ R+ IT+ L TG+RA+D++ TCG G
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  164  QRIGIFSGSGVGKSTLLGMVSRFSDADVNVIGLIGERGREVLDFIETDLGPEGLARSVVV  223
            QR+GIFS++GVGKSTLL+M+   +DAD NV+ LIGERGREV +FI+  L+ E   R V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  224  VATSEQPALVRLKGAFVACAVAEYFRDQGRDVLLMMDSITRFAMAQREVGLAIGEPPATK  283
            VATS++PAL R+++ FVA ++AE+FRD+G+ V+L+ DS+TR+A A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  284  GYTPSVFALLPRLLERAGMSSAGSITAFFTVLVDGDDLNEPISDAVRGILDGHIVLSRSL  343
             Y P+VF+ LPRLLER+GM+  GSITAF+TVLV+GDD+NEP++D VR++LDGHIVLSR L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  344  AASNHFPAVDVLNSVSRLMPDITTEEHRAWAGRLRDLLAAYRQAEDLINIGAYVAGSNPR  403
            A   H+PA+DVL ++SR+ P +T++EHR  A+ LR  LA Y++ E LI IG Y  G +  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  404  VDEAIACYQDIVAFLRQDLKE  424
             D AI  Y DI +FLRQ   E
Sbjct  396  TDKAIDTYPDICTFLRQSKDE  416

369) MYA_4956 in NC_017921


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  305 bits (1143),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 209/415 (51%), Positives = 304/415 (74%), Gaps = 4/415 (0%)

Query  51   GRVNHAVGQILNATGIRARLGEICELRTPNQPTLLAEVVGFSRQTTLLTPLGDVAGLSPE  110
            GR+++  + +LNA      +GE+C ++  ++   LAEVVG++   +LL+P+   AGL   
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  111  TTVVPSGREHVFAVGDALFgrvldglgrplddlgpvTGAAWVSTQQDPPNPLARKLIDTP  170
              V++  R H  +VG+AL+GRV+DG+GRPLD+        W   +  PP ++ R+ I  P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL-PEVCWKDYDAMPPPAMVRQPITQP  138

Query  171  FPTGVRVIDGLMTLGVGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVRE  230
            + TG+R ID++ T G GQRVGIF+++GVGKSTLL+M+  +++AD NV+ L+GERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  231  FIEHSLSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFA  290
            FI+ +LS E R R ++VV+TSDRPA+ERV++ +VAT+IAE FRD GKRV+LL DSLTR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  291  RAQREVGLASGEPPTRRSFPPSTFAVLPRLLERAGQGARGSITALYTVLVEGDEESDPIA  350
            RA RE++LA+GE +    +PP+ F+ LPRLLER+G G +GSITA+YTVLVEGD+ ++P+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  351  EEVRSILDGHIVLSRKIALANRYPAIDVLASLSRVMPLVASRTHQHAAARVRELIAKYQE  410
            +EVRS+LDGHIVLSR++A   +YPAIDVLA+LSRV P+V+S+ H++ AA +R  +A YQE
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  411  IELLVQIGEYREGSDRLGDLALRARDAIGAFCAQASHEDVRFDALLAKLTRLAND  465
            +ELL++IGEY+ G D   D A+ +   I +F  Q+ +E    + L+ KL ++  +
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

370) Desaci_3824 in NC_018068


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  305 bits (1143),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 201/411 (49%), Positives = 295/411 (72%), Gaps = 3/411 (0%)

Query  21   GRVSKIVGLMIESAGPRVSVGEYCHILTRAGNELPAEVVGFRDSTALLMPLGELEGIAPG  80
            GR+  + + ++++  P V +GE C I  ++G+EL AEVVG+ +S ALL P+    G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   DRVIPQRQKLTVSVGSGLLGRILNGLGHPIDGRPLKTENSYPLQNKPPNALLRPRITDVL  140
            ++V++ R++  V+VG +LLGR+++G+G+P+DGR L        +  PP A++R  IT+ L
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPL  139

Query  141  SVGVRTIDGLLTLGRGQRMGIFAGSGVGKSTLLGMMARNTVADVNVIALVGERGRELRDF  200
              G+R+ID++ T G GQR+GIF+++GVGKSTLL+M+     AD NV+ L+GERGRE+R+F
Sbjct  140  MTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREF  199

Query  201  IEKDLGPAGLARSVIVVATSDQPALVRLKaaftatavaeffRDQGKDVLLMMDSVTRFAM  260
            I+  L+     R VIVVATSD+PAL R++A F AT++AEFFRD+GK V+L+ DS+TR+A 
Sbjct  200  IDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYAR  259

Query  261  AQREVGLTVGEPPATRGYPPSVFALLPKLLERSGMAEKGSITGIYTVLVDGDDHNEPIAD  320
            A RE++L+ GE + +  YPP+VF+ LP+LLER+GM+EKGSIT++YTVLV+GDD NEP+AD
Sbjct  260  AAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLAD  319

Query  321  TVRGILDGHIVLTRDLAMQNHYPAIDILQSVSRVMNDVVSPVHKDLASKFREHLAVYRDA  380
             VR++LDGHIVL+R LA + HYPAID+L ++SRV   V S  H++LA+ +R +LA+Y++ 
Sbjct  320  EVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEV  379

Query  381  KDLIDIGAYTSGSNPRIDSAIAYIERIQEFTRQGVSESSGFEETLQQLNGI  431
              LI IG Y  G +   D AI     I  F RQ+  E  G E  +++L+ I
Sbjct  380  ELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

371) CPE3_0037 in NC_022441


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  304 bits (1141),  Expect = 6e-84, Method: Compositional matrix adjust.
 Identities = 202/403 (51%), Positives = 296/403 (74%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPNVRVGEVCLVKRHGLEPLVTEVVGFTQNFAFLSPLGELTGVSPA  84
            GRI +V + L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVVPTGLPLHIRAGDGLLGRVLNGLGEPIDTEFKGPLVNVD-ETYPIFCPPPDPLHREK  143
             +V++     ++  G++LLGRV++G+G P+D      L +V    Y     PP ++ R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR---ELPEVCWKDYDAM--PPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRNQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FR++GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

372) CPE1_0037 in NC_022439


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  304 bits (1141),  Expect = 6e-84, Method: Compositional matrix adjust.
 Identities = 202/403 (51%), Positives = 296/403 (74%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPNVRVGEVCLVKRHGLEPLVTEVVGFTQNFAFLSPLGELTGVSPA  84
            GRI +V + L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVVPTGLPLHIRAGDGLLGRVLNGLGEPIDTEFKGPLVNVD-ETYPIFCPPPDPLHREK  143
             +V++     ++  G++LLGRV++G+G P+D      L +V    Y     PP ++ R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR---ELPEVCWKDYDAM--PPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRNQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FR++GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

373) CPE2_0037 in NC_022440


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  304 bits (1141),  Expect = 6e-84, Method: Compositional matrix adjust.
 Identities = 202/403 (51%), Positives = 296/403 (74%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPNVRVGEVCLVKRHGLEPLVTEVVGFTQNFAFLSPLGELTGVSPA  84
            GRI +V + L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVVPTGLPLHIRAGDGLLGRVLNGLGEPIDTEFKGPLVNVD-ETYPIFCPPPDPLHREK  143
             +V++     ++  G++LLGRV++G+G P+D      L +V    Y     PP ++ R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR---ELPEVCWKDYDAM--PPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRNQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FR++GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

374) G5S_0335 in NC_015408


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  304 bits (1141),  Expect = 6e-84, Method: Compositional matrix adjust.
 Identities = 202/403 (51%), Positives = 296/403 (74%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPNVRVGEVCLVKRHGLEPLVTEVVGFTQNFAFLSPLGELTGVSPA  84
            GRI +V + L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVVPTGLPLHIRAGDGLLGRVLNGLGEPIDTEFKGPLVNVD-ETYPIFCPPPDPLHREK  143
             +V++     ++  G++LLGRV++G+G P+D      L +V    Y     PP ++ R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR---ELPEVCWKDYDAM--PPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRNQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FR++GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

375) Meso_0107 in NC_008254


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  304 bits (1141),  Expect = 6e-84, Method: Compositional matrix adjust.
 Identities = 194/406 (48%), Positives = 292/406 (72%), Gaps = 13/406 (3%)

Query  11   FRRRGRVSKAVGPVV--RAAGNFCVGEICAVSRSNGDPILAEVVGFDQGEAILTPYGGTA  68
            + R+GR+    + ++  + +G F +GE+C +  ++    LAEVVG++ + A+L+P+ +TA
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVF-MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTA  74

Query  69   GISHNSTIEPLMSTFEVPVGEELTGRVIDAMGKPIDAGPSVTSCAFYPGHRTAPNP-MLR  127
            G+     + +L    +VPVGE L GRVID+ G+P+D+      C    +  + P P M+R
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMVR  132

Query  128  PTIDRPFILGVRVLDGALTCGEGQRMGIFAAAGGGKSTLVSLMVRFAEYDRCVIALIGER  187
              I +P++ G+R +D+  TCGEGQR+GIF+A+G GKSTL++++   ++ D  V+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  188  GREVREFLEHQLGPTGLAKSIVVVATSDRPAIEQVKAAYTATALAEFHRDRGERVLLIMD  247
            GREVREF++  L+     + ++VVATSDRPA+E+V+A + AT++AEF RD G RV+L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  248  SLTRFARAQRQIGLAAGEPPTRRGFPPSVFELLPGLVERAGLSGDGSITAFYTVLVEGDD  307
            SLTR+ARA R+I+LAAGE +    +PP+VF  LP L+ER+G++  GSITAFYTVLVEGDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  308  MNEPVADEVRSLLDGHIVLSRKLAEAGHYPPVDVITSTSRILSRIVSPDH--LEAVHKAR  365
            MNEP+ADEVRSLLDGHIVLSR+LAE GHYP++DV+++ SR+++ + S +H  L A+ + R
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  366  GLMSKLQEIELLLKIGEYSKGadaladealarrtaldaFLRQGVNE  411
              ++  QE+ELL++IGEY +G D+ +D A+     + +FLRQ+ +E
Sbjct  373  --LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

376) Desru_1241 in NC_015589


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  304 bits (1139),  Expect = 7e-84, Method: Compositional matrix adjust.
 Identities = 188/384 (49%), Positives = 270/384 (71%), Gaps = 7/384 (1%)

Query  45   IGEVCDIVVQGEAEPVRAEVVGFRDLYSLLMPLGELRGIYPGCAVVPSGHTLTVKIGRHL  104
            +GE+C I    E     AEVVG+ +  +LL P+    G+  G  V++  +   V +G  L
Sbjct  42   MGELCCIKPGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  105  LGKVLDGLGRPIENHILNGQG-EEYPVDNRPPNPLERKRINTILPTGVRAIDGLLTCGKG  163
            LG+V+DG+GRP++ + L      +Y  D  PP ++ R+ I   L TG+RAID++ TCG G
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  164  QRIGIFAGSGVGKSTLLGMIARHGSADVNVIALVGERGREVLEFLEEDLGPEGMARSIVV  223
            QR+GIF+++GVGKSTLL+M+     AD NV+ L+GERGREV EF++  L+ E   R ++V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  224  AATSDQPALVRLKGAFVATAIAEYFRDQGLDVMLMMDSVTRFAMAQREVGLAVGEPPATK  283
             ATSD+PAL R+++ FVAT+IAE+FRD+G  V+L+ DS+TR+A A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  284  GYTPSVFALLPKLLERSGMGRRGSVTAFYTVLVDGDDLNEPIADAVRGILDGHIVLSRSL  343
             Y P+VF+ LP+LLER+GMG +GS+TAFYTVLV+GDD+NEP+AD VR++LDGHIVLSR L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  344  ASRNHYPSIDILQSVSRLMPDIASEEHKSQAGAIKDLLATYLQSEDLINIGAYVKGSNAK  403
            A R HYP+ID+L ++SR+ P ++S+EH+  A+ ++  LA Y + E LI IG Y +G ++ 
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  404  IDLAMLKYEEIVNFLKQSPTEHSG  427
             D A+  Y +I  FL+QS  E  G
Sbjct  396  TDKAIDTYPDICTFLRQSKDEVCG  419

377) fliI in NC_010382


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  304 bits (1140),  Expect = 7e-84, Method: Compositional matrix adjust.
 Identities = 193/408 (48%), Positives = 280/408 (69%), Gaps = 8/408 (1%)

Query  11   PHMPTFKKFGRVTRVVGLMIESQGPDSSIGDVCKIHVETVNNGHQIILAEVVGFKDEIVV  70
            P    + + GR+  V + ++++  P+  +G++C      ++ G++  LAEVVG+++   +
Sbjct  14   PPPDGYCRWGRIQDVSATLLNAWLPGVFMGELC-----CIKPGEE--LAEVVGINGSKAL  66

Query  71   LMPFTSLREISIGCLVEGTGAPLEVKVGPELIGKVLDSMGNPIDGTLLPKGLMTVPTEQD  130
            L PFTS   +  G  V +     +V VG  L+G+V+D+ G P+DG  LP  +     +  
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EVCWKDYDAM  125

Query  131  PPNPLTRPPINERLEVGVKAIDGMLTVGNGQRVGIFAGSGVGKSTLLGMIARNTQADLNV  190
            PP ++ R PI + L  G++AID++ T G+GQRVGIF+++GVGKSTLL+M+    +AD NV
Sbjct  126  PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV  185

Query  191  IALIGERGREVREFIERDLGPEGLSRSIVVAATSDQPALMRIKGAFTATAIAEYFRNRGL  250
            + LIGERGREVREFI+  L+ E   R ++V ATSD+PAL R+++ F AT+IAE+FR+ G 
Sbjct  186  LVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGK  245

Query  251  NVMLMMDSVTRVAMAQREIGLATGEPPAQKGYTPSVFAILPKLLERTGTNEKGSITAFYT  310
             V+L+ DS+TR A A REI+LA+GE +    Y P+VF+ LP+LLERTG  EKGSITAFYT
Sbjct  246  RVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYT  305

Query  311  VLVDGDDMNEPIADTVRGILDGHIVLDRNLANKGQYPAINVLKSVSRLMNHVAAPEHKKA  370
            VLV+GDDMNEP+AD VR++LDGHIVL R LA++G+YPAI+VL ++SR+   V++ EH++ 
Sbjct  306  VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL  365

Query  371  AERLRELYYTYDKSEDLINIGAYKRGTSREIDEAIHYEPLITTYLKQG  418
            A  LR     Y+  E LI IG Y+RG   + D AI+  P I T+L+Q+
Sbjct  366  AAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

378) fliI in NC_006582


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  304 bits (1139),  Expect = 8e-84, Method: Compositional matrix adjust.
 Identities = 186/407 (46%), Positives = 289/407 (72%), Gaps = 11/407 (2%)

Query  14   YKWYGQVRHAAGLTIESAGPRAFIGELCYIWASPDQKGTKVRAEVVGFKDDRILLMPLDD  73
             +W G++++ ++  +++  P  F+GELC I      K     AEVVG+++ + LL P+  
Sbjct  20   CRW-GRIQDVSATLLNAWLPGVFMGELCCI------KPGEELAEVVGINGSKALLSPFTS  72

Query  74   TRRIAPGSYVEGTGKPLNVACGPSLIGQIVNGVGEPFLQSAALGDTD-ANYSTDNSPPNP  132
            T  +  G  V +  +  +V+ G +L+G++++G G P L++  L +    +Y  D  PP +
Sbjct  73   TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRP-LDGRELPEVCWKDY--DAMPPPA  129

Query  133  LERPRISEIMSVGVRAIDGLLTMGKGQRVGIFAGSGVGKSTLMSMIAKQSDADVNVIALI  192
            + R  I++ +  G+RAID++ T G GQRVGIF+++GVGKSTL++M+ + +DAD NV+ LI
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  193  GERGREVKEFVERDLGEEGLKKSVVVVATSDQPALLRVKGAQTATAIAEYFRDKGKNVNL  252
            GERGREV+EF++  L+EE  K+ V+VVATSD+PAL RV++   AT+IAE+FRD+GK V L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  253  MMDSVTRFAMAQREIGLAIGEPPTTKGYPPSVFAMMPKLLERSGTNQSGSITGLYTVLVD  312
            + DS+TR+A A REI+LA GE + +  YPP+VF+ +P+LLER+G  + GSIT++YTVLV+
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  313  GDDMNEPIADAVRGILDGHFVLDRQLANRGQYPAVNVLKSVSRLMKDLVENDHLHAAKLF  372
            GDDMNEP+AD VR++LDGH+VL R+LA+RG+YPA++VL ++SR+   +  ++H + A ++
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  373  RQRLADYEQSEDLISLGAYKQGSSKDIDAAIHDHPAMLDFLKQEVEE  419
            R+RLA Y++ E LI +G Y++G   D D AI+  P +  FL+Q  +E
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

379) fliI in NC_010674


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  303 bits (1136),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 189/381 (50%), Positives = 273/381 (72%), Gaps = 7/381 (1%)

Query  41   FVGELCIIYNEKNAPVNCEVVGFKDGFVVLMPLDELIGISPGCRVVPMRKPLSVKCSDKL  100
            F+GELC I   K +    EVVG++++  +L P+    G+  G +V+++R+   V  ++ L
Sbjct  41   FMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  101  LGEIIDGLGKPLRGEELVQG--EDYPLENNPPDPLKRKRIKEIMPTGIRAIDGFLTCGDG  158
            LG +IDG+G+PL G EL +    DY  +  PP ++ R+ I + + TGIRAID+  TCG+G
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  159  QRIGIFAGSGVGKSTTLGMIAREAKADVNVIALIGERGREVLEFIEKDLGPEGMKKSVVV  218
            QR+GIF+++GVGKST L+M+   + AD NV+ LIGERGREV EFI+  L+ E  K+ V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  219  CATSDKPALIRLKGALTATAIAEYFRDKGKKVILMMDSVTRFAMAQREVGLAIGEPPATK  278
             ATSD+PAL R+++ + AT+IAE+FRD+GK+V+L+ DS+TR+A A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  279  GYTPSVFAKLPKLMEKSGTSEDGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRSL  338
             Y P+VF+ LP+L+E++G +E GSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  339  AHKNHYPAIDILNSVSRLMNSIAPSEHIKAASIARDLLATYKESEDLINIGAYVKGSNKK  398
            A++ HYPAID+L ++SR+   +++ EH + A+I R  LA Y+E E LI IG Y +G +  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  399  IDLAISYHDKIEEFLRQTVNE  419
             D AI     I  FLRQ+ +E
Sbjct  396  TDKAIDTYPDICTFLRQSKDE  416

380) GM21_3919 in NC_012918


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  303 bits (1137),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 192/415 (47%), Positives = 290/415 (70%), Gaps = 6/415 (1%)

Query  20   HGKVTQVVGLVIEGYCPETAVGSVCEVHSEGHAPIPAEVVGFRENKTLLMPLGELRGVGL  79
             G++ +V + ++++  P   +G +C + +  +    AEVVG+  +K+LL P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  80   GSVISVRREKAALGVGPALLGRVIDGLGQPIDDKGPIEVA-DEYPIYALPVNPMKRRPIR  138
            G  +   R +  + VG ALLGRVIDG+G+P+D++   EV   +Y   A+P  +M R+PI 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPIT  136

Query  139  KPLNLGIRAINGLLTCGEGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGREL  198
            +PL  GIRAI+++ TCGEGQRVGI +++GVGKSTLL+M+    +AD NV+ LIGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  199  REFIEKDLQKEGLRKSVVVVATSDQPPLVRMRGAYIATTIAEYFQAQGKKVLLMMDSATR  258
            REFI+  L  E  ++ V+VVATSD+P+L R+R+ ++ATTIAE+F+ +GK+V+L+ DS TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  259  FAMAMREVGLAIGEPPTTKGYTPSVFAALPRLLERTGNFQGGSITGLYTVLVEGDDFNEP  318
            +A A RE++LA GE + +  Y P+VF+ALPRLLERTG  + GSIT++YTVLVEGDD NEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  319  ISDAMRSILDGHIILTRELAARNIYPPIDLMNSASRVMSDVATKEHRALAGRFKELLATY  378
            ++D +RS+LDGHI+L+R LA R  YP+ID++ + SRV + V++ EHR LA+ ++  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  379  RQAEDMINIGAYKSGSNPKIDYAVAKMEQMIGYLKQDVGDEVNFEESIAALEQIF  433
            ++ E +I IG Y+ G +   D A+    ++  +L+Q  ++    E  I  L+QI+
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

381) fliI in NC_015975


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  303 bits (1137),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 197/421 (47%), Positives = 292/421 (70%), Gaps = 6/421 (1%)

Query  23   YTTYGKVSEVVGLVIKAEGLSVFVGEICEVAIKGSDKVALAEVVGFVKETVLLMPLDELE  82
            Y   G++ +V + +++A   +VF+GE+C   IK ++   LAEVVG+     LL P+    
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELC--CIKPGE--ELAEVVGINGSKALLSPFTSTA  74

Query  83   GIGPGCVVKPTGKTLQVRVGPQLLGHTLDGLGRPLDDSDIDTDKLVDYPVIQDSPDPFRR  142
            G+  G  V +  +  QV VG  LLG+ +DG+GRPLD+ ++      DY  +  +P +  R
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVR  132

Query  143  KRISNVMPTGVRTIDGLLTVGEGQRMGIFAGSGVGKSTLLGMIARYCQADVIVIGLIGER  202
            + I++ + TG+R+ID++ T GEGQR+GIF+++GVGKSTLL+M+    +AD  V+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  203  GREVMEFIEKDLGKEGYAKSVVVCATSDTPPLVRLKGAHTATAIAEYFRDQGKKVVLMMD  262
            GREV EFI+  L+ E   + V+V ATSD P+L R+++   AT+IAE+FRD+GK+VVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  263  SVTRFAMAQREIGLSTGEPPTTKGYTPSVFAELPKLLERSGMSEKGSITAFYTVLVEGDD  322
            S+TR+A A REI+L++GE + +  Y P+VF+ LP+LLER+GM+EKGSITAFYTVLVEGDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  323  MNEPIADAVRGILDGHIVLSRKIASQNHYPAIDVQVSLSRLMKELVSEEHTKDAGELREN  382
            MNEP+AD VR++LDGHIVLSR++A + HYPAIDV  +LSR+   + S+EH + A+ LR  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  383  MGVYNDSKDLIDIGAYKKGSNAVIDYAVSLHVPIEDFLKQRVEEYSSFEETESRLHGLFE  442
            +++Y++   LI IG Y++G ++  D A+     I  FL+Q  +E  + E    +LH ++ 
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

Query  443  E  443
            E
Sbjct  433  E  433

382) fliI in NC_015690


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  303 bits (1137),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 187/400 (47%), Positives = 283/400 (71%), Gaps = 7/400 (1%)

Query  24   GKVTQVIGLTVESEGPDASIGDLCYIYPHKSNKPLKAEVVGFKNNKVILMPLGELDSIGP  83
            G++ +V +  +++  P+  +G+LC I   K+   L AEVVG++ +K +L P+    ++  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKALLSPFTSTAGLHC  78

Query  84   GCDVVGTGKPLSVQVGHELLGKVLDGLGQPMDGSFLPS-RMAQYSTNNAPSNPLTRPRVL  142
            G +V++  +   V VG+ LLG+V+DG+G+P+DG  LP     +Y  +  P+ ++ R  + 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPIT  136

Query  143  EPISVGVRCIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTSADVNVIALIGERGREV  202
            +P+  G+R ID++ T G GQRVGIF+++GVGKSTL++M+     AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  203  LDFIERDLGPEGLARSVVIVATSDQPALIRIKASLIATSIAEYFRDRGLNVMMMMDSVTR  262
             +FI+  L+ E   R V++VATSD+PAL R++A ++AT+IAE+FRD G  V+++ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  263  FAMAQREVGLAVGEPPATRGYTPSVFAMLPKLLERSGNGPKGSITAFYTVLVDGDDMNEP  322
            +A A RE++LA GE + +  Y P+VF+ LP+LLER+G G KGSITAFYTVLV+GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  323  IADAVRGILDGHIVLNRAIANRGHYPAIDVLASVSRVMKEIVPKEQQLASENLTRLLATY  382
            +AD VR++LDGHIVL+R +A+RGHYPAIDVLA++SRV   + + E++  +  L R LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  383  KDSEDLVNIGAYQRGSNPEIDEALESIHSIWDYTKQRTDD  422
            ++ E L+ IG YQRG + + D A+++   I  + +Q  D+
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

383) BTI_4115 in NC_021174


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  303 bits (1134),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 211/420 (51%), Positives = 307/420 (74%), Gaps = 17/420 (4%)

Query  28   GKVLEVIGTLMRVVGLEATLGELCELRSASGALIQHAEVVGFTRNVALLSPFGTLGEINR  87
            G++ +V +TL+        +GELC ++++     + AEVVG+  + ALLSPF + + ++ 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGLHC  78

Query  88   GTRVIGLRRPLSVKVGHGILGRVIDSFGEPIDGRGEL------DYDALRPVIAPPPNPMS  141
            G +V++LRR   V VG+++LGRVID+FG P+DGR EL      DYDA+      PP +M 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAM------PPPAMV  131

Query  142  RRMVDAPLATGVRIVDGLITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIge  201
            R+ +  PL TG+R +D++ T GEGQR+GIF+++GVGKSTLL+M+  ++  D NV+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  202  rgrevrefveLIMGEDGMARSVVVCATSDRSSIERakaayaataiaEYFRDQGKRVLLMM  261
            RGREVREF+++ ++E+   R V+V ATSDR+++ER +A + AT+IAE+FRD+GKRV+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  262  DSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGEHGSITALYTVLAEDD  321
            DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLERTGMGE GSITA+YTVL E+D
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  322  SGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSLSRIMPQVATREHVGAAGRLRQ  381
              ++P+A+EVR++LDGHI+LSR +A R +YPAIDVL++LSR+ P V+++EH   A+ LR+
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  382  LLAKHREIETLLQLGEYQAGSDPAADEAVAKIDRIRTFLNQRTDEYSPPDATLAALHALV  441
             LA  +E+E L+++GEYQ G D  +D A+     I TFL Q  DE   P+  +  LH ++
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

384) Hore_16860 in NC_011899


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  303 bits (1134),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 205/416 (50%), Positives = 297/416 (72%), Gaps = 10/416 (2%)

Query  22   YGHITRVVGLIIESKGPEVSIGEICLIKNGKRSVKAEVVGFDKDKVLLMPIGEMRGINPG  81
             G+I  V + ++++  P V +GE+C IK G     AEVVG++  K LL P+    G++ G
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   ARVVATGEKLTVKvgegllgqvlnglgqPISSGLKMRHGFTEVPVM---AQPPDPLLRKR  138
             +V+A   +  V VGE+LLG+V++G+G+P+ +     + + EV      A PP +++R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-----RELPEVCWKDYDAMPPPAMVRQP  134

Query  139  ITEPLSLGIRSIDGLLTCGRGQRVGIFAGSGVGKSTLLGMAARNTEADINVIGLVGERGR  198
            IT+PL  GIR+ID++ TCG GQRVGIF+++GVGKSTLL+M     +AD NV+ L+GERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  199  EVRDFIERDLGPEGLKKSIVVVATSDKPALVRVKAAYVATAIAEFFRDQGKNVLLMMDSV  258
            EVR+FI+  L+ E  K+ ++VVATSD+PAL RV+A +VAT+IAEFFRD+GK V+L+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  259  TRVAMAFREVGLAVGEPPATRGYPPSVYAELPKLLERAGTNQHGTITALYTVLVEGDDFN  318
            TR A A RE++LA GE + +  YPP+V++ LP+LLER+G  + G+ITA+YTVLVEGDD N
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  319  EPVSDTVRGILDGHIVLSRDLASRNHYPAVDVLESVSRLMPDIVDEEHLQAAGEVKKMLA  378
            EP++D VR++LDGHIVLSR LA R HYPA+DVL ++SR+ P +  +EH Q A+ +++ LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  379  DYRESEDLINIGAYKPGSNPAIDRALENINDINTFLRQGIGQKSSFEETVTMLKQI  434
             Y+E E LI IG Y+ G +   D+A++   DI TFLRQ+ ++  + E  +  L QI
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

385) fliI in NC_019954


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  303 bits (1134),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 195/417 (47%), Positives = 293/417 (71%), Gaps = 7/417 (1%)

Query  24   GRISKIVGLTIESEGPPAELGEICIIKSPKNPKSIFSEVVGFRDEIVILMPLGDMEDLGP  83
            GRI  + +  +++  P   +GE+C IK+  +    ++EVVG+ +   +L P+    +L  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLHC  78

Query  84   GWDVEATGKKMTTPVGDELLGRVLDGLGNPIDDKG-PLKAKLHYPVSNNPPNPVERPIIS  142
            G +V A  ++   PVG+ LLGRV+DG+G P+D++  P     +Y     PP ++ R  I+
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPIT  136

Query  143  EPLPVGVRAIDALLTCGIGQRLGIFAGSGVGKSTLLGMIARNTKADVNVIALVGERGREL  202
            +PL  G+RAID++ TCG GQR+GIF+++GVGKSTLL+M+     AD NV+ L+GERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  203  NSFITKDLGEEGVKRSVIVVATSDKPPLVrtraaftataiaEYFRDQGANVLLMMDSITR  262
              FI   L+EE  KR VIVVATSD+P+L R RA F AT+IAE+FRD+G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  263  FAMAQREVGLAAGEPPVTRGYTPSVYATLPKLLERAGTSAKGSITGIYTVLVDGDDLNEP  322
            +A A RE++LAAGE +V+  Y P+V+++LP+LLER+G + KGSIT++YTVLV+GDD+NEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  323  ISDAVRGILDGHIVLSRELANKNHYPAIDVMASISRLMNDIVTPNHRKLAGRVKNILSVY  382
            ++D VR++LDGHIVLSR LA++ HYPAIDV+A++SR+   + + +HR+LA+ ++  L++Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  383  KEAEDLINIGAYVKGNNPQIDESIKYIDKIENFLKQEVEEKINFEQTINALERIFED  439
            +E E LI IG Y +G + + D +I     I  FL+Q  +E    E  I+ L++I+ +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

386) TepRe1_1222 in NC_015519


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  303 bits (1134),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 195/417 (47%), Positives = 293/417 (71%), Gaps = 7/417 (1%)

Query  24   GRISKIVGLTIESEGPPAELGEICIIKSPKNPKSIFSEVVGFRDEIVILMPLGDMEDLGP  83
            GRI  + +  +++  P   +GE+C IK+  +    ++EVVG+ +   +L P+    +L  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLHC  78

Query  84   GWDVEATGKKMTTPVGDELLGRVLDGLGNPIDDKG-PLKAKLHYPVSNNPPNPVERPIIS  142
            G +V A  ++   PVG+ LLGRV+DG+G P+D++  P     +Y     PP ++ R  I+
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPIT  136

Query  143  EPLPVGVRAIDALLTCGIGQRLGIFAGSGVGKSTLLGMIARNTKADVNVIALVGERGREL  202
            +PL  G+RAID++ TCG GQR+GIF+++GVGKSTLL+M+     AD NV+ L+GERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  203  NSFITKDLGEEGVKRSVIVVATSDKPPLVrtraaftataiaEYFRDQGANVLLMMDSITR  262
              FI   L+EE  KR VIVVATSD+P+L R RA F AT+IAE+FRD+G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  263  FAMAQREVGLAAGEPPVTRGYTPSVYATLPKLLERAGTSAKGSITGIYTVLVDGDDLNEP  322
            +A A RE++LAAGE +V+  Y P+V+++LP+LLER+G + KGSIT++YTVLV+GDD+NEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  323  ISDAVRGILDGHIVLSRELANKNHYPAIDVMASISRLMNDIVTPNHRKLAGRVKNILSVY  382
            ++D VR++LDGHIVLSR LA++ HYPAIDV+A++SR+   + + +HR+LA+ ++  L++Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  383  KEAEDLINIGAYVKGNNPQIDESIKYIDKIENFLKQEVEEKINFEQTINALERIFED  439
            +E E LI IG Y +G + + D +I     I  FL+Q  +E    E  I+ L++I+ +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

387) fliI in NC_002570


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  302 bits (1133),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 203/422 (49%), Positives = 301/422 (72%), Gaps = 7/422 (1%)

Query  11   PSLSAY-KWYGKVTRVIGLTIEAKGPQASIGELCYILVGKQGTKVMAEVVGFKEERVLLM  69
            P+  +Y +W G++  V +  ++A  P   +GELC I  G +    +AEVVG++  + LL 
Sbjct  14   PPPDGYCRW-GRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLS  68

Query  70   PLNGTAEIAPGSLVEGTGRPLQVKVGYSLIGHVIDGCGRPLTGEALPNGLtpyptdnppp  129
            P+ +TA +  G  V +  R  QV VG +L+G+VIDG GRPL G  LP+ +     D  PP
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCWKDYDAMPP  127

Query  130  npisrpriKEAMHLGVRAIDGLLTVGKGQRVGIFAGSGVGKSTLLAMlaknaaadlniia  189
             ++ R  I +++  G+RAID++ T G GQRVGIF+++GVGKSTLLAML + + AD N++ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  190  liGERGREVKDFIERDLGEDGLRRSIIVVATSDQPALMRIKGAMTATALAEYFRDQGLHV  249
            LIGERGREV++FI+  L+E+  +R +IVVATSD+PAL R+++   AT++AE+FRD+G +V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  250  NLMMDSVTRFAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNGKGSITGFYTVL  309
             L+ DS+TR+A A REI+LA GE + +  Y P+VF+ LP+LLER+G   KGSIT+FYTVL
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVL  307

Query  310  VDGDDLNEPISDTVRGILDGHFVLDRELANKGHYPAINILKSVSRVMNDIVTDEQKRAAE  369
            V+GDD+NEP++D VR++LDGH+VL R LA++GHYPAI++L ++SRV   + ++E+++ A 
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  370  HVRSLLSVYKESEDLINIGAYKRGSSKQIDEAIERQPEVISFLRQNTDEVAIAEHSIQQL  429
             +R  L++Y+E E LI IG Y+RG   + D AI+  P++ +FLRQ+ DEV  +E  I++L
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

Query  430  IQ  431
             Q
Sbjct  428  HQ  429

388) fliI in NC_007517


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  302 bits (1133),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 195/417 (47%), Positives = 293/417 (71%), Gaps = 6/417 (1%)

Query  24   HGKVTQVVGLVIEGYCPDAAVGTLCHVHPHDGDPIPAEVVGFRDNKTLLMPLGELRGVGL  83
             G++ +V + ++++  P+  +G LC + P  G+ + AEVVG+ ++K+LL P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKP--GEEL-AEVVGINGSKALLSPFTSTAGLHC  78

Query  84   GSLISVKRKKSSLGVGPGLLGRVIDGLGEPIDDKG-PLATREEYPIYANPVNPMKRRPIR  142
            G  +   R++  + VG +LLGRVIDG+G P+D++  P   + +Y   A P  +M R+PI 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPIT  136

Query  143  EPLDLGIRAINGLLTCGKGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGREL  202
            +PL  GIRAI+++ TCG GQRVGI +++GVGKSTLL+M+    +AD NV+ LIGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  203  REFIEKDLQEEGLKKSVVVVATSDQPPLVRMRGAYIATTIAEYFQAQGKKVLLMMDSATR  262
            REFI+  L EE  K+ V+VVATSD+P+L R+R+ ++ATTIAE+F+ +GK+V+L+ DS TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  263  FAMAMREVGLAIGEPPTTKGYTPSVFAALPKLLERTGNFMDGSITGLYTVLVEGDDFNEP  322
            +A A RE++LA GE + +  Y P+VF+ALP+LLERTG    GSIT++YTVLVEGDD NEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  323  VSDAMRSILDGHIVLNRELAARAIYPPIDVLASASRVMMDVTERGQQQFASRFKELLAAH  382
            ++D +RS+LDGHIVL+R LA R+ YP+IDVLA+ SRV   VT + ++Q+A+ ++  LA  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  383  KQAEDLINIGAYKPGSNPTIDYAISKMEGMVGYIRQGIHDGVTMEQSVTALGDIFDE  439
            ++ E LI IG Y+ G +   D AI    ++  ++RQ+ ++    E  +  L +I+ E
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

389) Clocel_1717 in NC_014393


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  302 bits (1131),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 188/377 (50%), Positives = 272/377 (73%), Gaps = 0/377 (0%)

Query  59   EVVGFKSDDIILMPLGELVGIAPGCRVVATGIPLSVNCSYDLLGKIIDGLGRPLDKSSIP  118
            EVVG+++   +L P+    G+  G +V+A      V  +  LLG++IDG+GRPLD   +P
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP  115

Query  119  QGEMYPLDTNPPDPLKRRRIKEILPTGVRAIDGFLTCGEGQRVGIFAGSGVGKSTLLGMI  178
            +      D+ PP ++ R+ I + L TG+RAID+  TCGEGQRVGIF+++GVGKSTLL+M+
Sbjct  116  EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAML  175

Query  179  AREAQADINVIALIGERGREVLDFIEKDLGEEGMKRSIVVCATSDQPALVRLKGAFTATA  238
               ++AD NV+ LIGERGREV +FI+  L+EE  KR ++V ATSD+PAL R+++ F AT+
Sbjct  176  CNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATT  235

Query  239  IAEYFRDQGKKVILMMDSVTRFAMAQREVGLAVGEPPATKGYTPSVFAMLPKLMERSGMS  298
            IAE+FRD+GK+V+L+ DS+TR+A A RE++LA GE + +  Y P+VF+ LP+L+ER+GM+
Sbjct  236  IAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG  295

Query  299  EKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRALAAQNHFPAIDVLSSISRLMS  358
            EKGSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR LA + H+PAIDVL+++SR+ +
Sbjct  296  EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFP  355

Query  359  EIAEEEHKKSASLARDLLATYKNSEDLINIGAYVSGSNKKIDMAIFHNEKINLFLKQQVK  418
             ++ +EH++ A++ R  LA Y++ E LI IG Y  G +   D AI     I  FL+Q   
Sbjct  356  VVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD  415

Query  419  EKSAFEDSIDNLKKMFK  435
            E  + E  I++L +++ 
Sbjct  416  EVCGPELLIEKLHQILT  432

390) bgla_2g02830 in NC_015376


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  302 bits (1131),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 192/395 (49%), Positives = 286/395 (73%), Gaps = 5/395 (1%)

Query  33   RTGKVMEVVGTVIKVSGLDVTLGELCELRSPEGVLLQRAEVVGFTRDVALLSPFARLEHV  92
            R G++ +V +T+++    +V +GELC +++ E +    AEVVG+    ALLSPF+    +
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL----AEVVGINGSKALLSPFTSTAGL  76

Query  93   SRATQVIGLGRPLSIQVGDQLLGRVLDGLGEPIDGGPPLDSDDWRPVIVQPPDPMKRRMV  152
              + QV++L R   + VG+ LLGRV+DG+G P+DG   L    W+     PP +M R+ +
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPI  135

Query  153  DTPMPTGVRVVDAMMTLGEGQRMGIFAPAGVGKSTLMGMFARGAACDINVIALIGERGRE  212
              P+ TG+R +D++ T GEGQR+GIF+++GVGKSTL++M+  ++  D NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  213  VREFIELILGPDGMARSVVVCATSDRSSMERakaahtataiaEYFRDRGLRVLLMMDSLT  272
            VREFI++ L+ +   R V+V ATSDR+++ER +A   AT+IAE+FRD G RV+L+ DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  273  RFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGQTGSITALYTVLAEDETGGD  332
            R+ARA+REI+LAAGE +    +PP+VF+ LPRLLERTGMG+ GSITA+YTVL E++   +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  333  PVAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMSLVVPDTHNRAASRVRELMAK  392
            P+A+EVR++LDGH++LSR +A R +YPAIDVL++LSRV ++V ++ H + A+ +R  +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  393  HREVEVLLQVGEYQPGQNPVADEAIEKADVIREFL  427
             +EVE+L+++GEYQ G +  +D AI+    I  FL
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

391) REMIM1_PE00269 in NC_021909


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  302 bits (1130),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 206/407 (51%), Positives = 296/407 (73%), Gaps = 13/407 (3%)

Query  37   RGRITRAVGTLVHAVLSDARIGELCVLQDPSTGRSLEAEVVGFLPDGVLLTPIGDMVGLS  96
            +GRI    +TL++A L++  +GELC ++    G  L AEVVG+     LL+P+    GL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIK---PGEEL-AEVVGINGSKALLSPFTSTAGLH  77

Query  97   RRAEVVASGRMHEVPVGPDLLGRVIDSFGRPLDGKS----AIKTYETRPLRGRAPNPMTR  152
               +V+A  R H+VPVG  LLGRVID+FGRPLDG+       K Y++ P     P +M R
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP-----PPAMVR  132

Query  153  RIIERPFPLGVRALDGLLTCGEGQRIGIYGEPGCGKSTLLSQIVNGASADVSIIALIger  212
            + I +P+  G+RA+D++ TCGEGQR+GI++ PG GKSTLL+ + N++ AD +++ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  213  grevrefverHLGEAALRRTIVVVETSDRSAMERAQCAHMATALAEYFREQGLRVVLMMD  272
            GREVREF++  L+E + +R ++VV TSDR+A+ER +   +AT++AE+FR++G RVVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  273  SLTRFCRAMREIGLAAGEPPTRRGFPPSVFAMLPGLLERAGMDERGSITAFYTVLVEGDG  332
            SLTR+ RA REI+LAAGE +    +PP+VF+ LP LLER+GM+E+GSITAFYTVLVEGD+
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  333  LGDPIAEESRGILDGHVVLSRTIAARSQFPAIDVLQSRSRVMDAVVSVAHRKAASMFRDL  392
            + +P+A+E R++LDGH+VLSR +A R+++PAIDVL + SRV   V S  HR+ A+++R  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  393  LARYAESEFLLKVGEYKKGNDLLTDRAIASIGDLQGFLRQGEDEASG  439
            LA Y E E+L+++GEY++G D  TD+AI +  D+  FLRQ+ DE  G
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

392) Dred_2405 in NC_009253


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  302 bits (1130),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 189/378 (50%), Positives = 268/378 (71%), Gaps = 7/378 (1%)

Query  45   IGEVCDIVAQGEPEPVRAEVVGFRDQFSLLMPLGELRGIYPGCAVIPSGHNLTIKVGKHL  104
            +GE+C I     P    AEVVG+ +  +LL P+    G+  G  V++  +   + VG  L
Sbjct  42   MGELCCI----KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  105  QGKVLDGLGRPID-KTVDYASGQEFLVDNKPPNPLKRKRIDSVLPTGVRAVDALLTCGKG  163
             G+V+DG+GRP+D + +     +++  D  PP ++ R+ I   L TG+RA+D++ TCG G
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  164  QRIGIFAGSGVGKSTLLGMIARHGSADVNVIALIGERGREVLEFLEEDLGPQGMARSVIV  223
            QR+GIF+++GVGKSTLL+M+     AD NV+ LIGERGREV EF++  L+ +   R VIV
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  224  AATSDQPALVRLKGAFVATAIAEYFRDQGLDVMLMMDSVTRFAMAQREVGLAVGEPPATK  283
             ATSD+PAL R+++ FVAT+IAE+FRD+G  V+L+ DS+TR+A A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  284  GYTPSVFALLPKLLERSGMGQQGSITAFYTVLVDGDDLNEPIADAVRGILDGHIVLTRKL  343
             Y P+VF+ LP+LLER+GMG++GSITAFYTVLV+GDD+NEP+AD VR++LDGHIVL+R+L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  344  ASANHYPAIDVLQSVSRLMPDIASDQHKNQAGNLRDLLATYQESEDLINIGAYVLGSNPK  403
            A   HYPAIDVL ++SR+ P ++S++H++ A+ LR  LA YQE E LI IG Y  G +  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  404  IDHAISKHDEIIGYLRQS  421
             D AI    +I  +LRQS
Sbjct  396  TDKAIDTYPDICTFLRQS  413

393) fliI in NC_006177


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  302 bits (1131),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 201/403 (50%), Positives = 286/403 (71%), Gaps = 4/403 (0%)

Query  20   GRVTGAAGLIIESAGPRAKMNELCWLQGDGRRVPAEVVGFREDRLLLMPLGETDGLRPGW  79
            GR+ + ++ ++++  P   M ELC ++ +     AEVVG+   + LL P+  T GL+ G 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE--LAEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  80   DVIATGGPLQAPVGMGLLGRVIDGLGNPIDDKGPLMGCGFRPILGPAPDPLARQRIHRPL  139
            +V+A     Q PVG +LLGRVIDG+G P+D++     C  +   + +P ++ RQ I +PL
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-WKDYDAMPPPAMVRQPITQPL  139

Query  140  SLGVRALDALITVGMGQRIGIFAGSGVGKSTLLGMVARATAADCNVIALVGERGREVREF  199
              G+RA+D++ T G GQR+GIF+++GVGKSTLL+M+  A  AD NV+ L+GERGREVREF
Sbjct  140  MTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREF  199

Query  200  IEKDLGEEGLRRSVVVVATSEQPSLVRIRAALMATAIAEYFRDAHGLDVILMMDSVTRLA  259
            I+  L+EE  +R V+VVATS++P+L R+RA ++AT+IAE+FRD +G  V+L+ DS+TR A
Sbjct  200  IDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRD-NGKRVVLLADSLTRYA  258

Query  260  HAQREVGLAVGEPPATRGYTPSVFAMLPRVLERSGTGPAGSVTGVYTVLVDGDDMNEPVA  319
            +A RE++LA GE + +  Y P+VF+ LPR+LER+G G  GS+T+ YTVLV+GDDMNEP+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DAVRSILDGHVVLSRKLANAGHYPAIDPLQSVSRVMPDVTTPEHRKQAQRLRALLSAYQE  379
            D VRS+LDGH+VLSR+LA+ GHYPAID L ++SRV P VT+ EHR+ A  LR  L+ YQE
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  380  AEDLIQIGAYQQGTNPLVDEALAKMDQIKRFLIQPADQPSTME  422
             E LI+IG YQ+G +   D A+    +I  FL Q+ D+    E
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

394) fliI in NC_018268


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  302 bits (1130),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 194/400 (49%), Positives = 279/400 (70%), Gaps = 6/400 (1%)

Query  59   MMVGDRCVIQSQGRGVVEAEVVGFEDEKVYLMPLTAIEGLRPGALVVPLSSTSRVPVGNQ  118
            + +G+ C I++   G   AEVVG+++ K  L P+T+  GL+ G  V++L    +VPVG+ 
Sbjct  40   VFMGELCCIKP---GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEA  96

Query  119  LLGRVVDGSGEPLDGKGPLHAEARVSLSGDIINPLNRAPVRQPMDVGIRAINALLTVGQG  178
            LLGRV+DG G PLDG+  L    +    +    ++ R P+ QP+  GIRAI+++ T G+G
Sbjct  97   LLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  179  QRLGLFAGSGVGKSVLLGMMTRFTNADVTVVGLIGERGREVKEFIEDILGEEGLARSVVV  238
            QR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+EE   R V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  239  ASPADDSPLMRLRAAMLTTRIAEFYRDQGKRVLLLMDSLTRYAQAQREIALAVGEPPATK  298
             + +D ++L R+RA  ++T IAEF+RD+GKRV+LL DSLTRYA+A REIALA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  299  GYPPSVFAKLPQLVERTGNGRPGGGSITAFYTVLTEGDDQQDPIADAARAILDGHIVLSR  358
             YPP+VF+ LP+L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR
Sbjct  276  EYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  359  RLAEEGHYPAIDVEASISRVMPQVTDPEHFARAQRFKQVYSRYQQARDLISVGAYVKGSD  418
            RLAE GHYPAIDV A++SRV P VT  EH   A  +++  + YQ+   LI +G Y +G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  419  PETDFAVAHIANMRQFLKQGLSEKTSLNESVEQLLEVVPE  458
             +TD A+   +++  FL+Q+  E  + +  +E+L +++ E
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

395) fliI in NC_011146


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  302 bits (1130),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 190/415 (46%), Positives = 290/415 (70%), Gaps = 6/415 (1%)

Query  20   HGKVTQVVGLVIEGYCPETAVGSVCEVHSEGHAPIPAEVVGFRENKTLLMPLGELRGVGL  79
             G++ +V + ++++  P   +G +C + +  +    AEVVG+  +K+LL P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  80   GSVISVRREKAALGVGPALLGRVIDGLGQPIDDKGPIEVA-DEYPIYALPVNPMKRRPIR  138
            G  +   R +  + VG ALLGRVIDG+G+P+D++   EV   +Y   A+P  +M R+PI 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPIT  136

Query  139  KPLNLGIRAINGLLTCGEGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGREL  198
            +PL  GIRAI+++ TCGEGQRVGI +++GVGKSTLL+M+    +AD NV+ LIGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  199  REFIEKDLQKEGLRKSVVVVATSDQPPLVRMRGAYIATTIAEYFQAQGKKVLLMMDSATR  258
            REFI+  L  E  ++ V+VVATSD+P+L R+R+ ++ATTIAE+F+ +GK+V+L+ DS TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  259  FAMAMREVGLAIGEPPTTKGYTPSVFAALPRLLERTGNFQGGSITGLYTVLVEGDDFNEP  318
            +A A RE++LA GE + +  Y P+VF+ALPRLLERTG  + GSIT++YTVLVEGDD NEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  319  ISDAMRSILDGHIILTRELAARNIYPPIDLMNSASRVMSDVATKEHKALAGRFKELLATY  378
            ++D +RS+LDGHI+L+R LA R  YP+ID++ + SRV + V++ EH+ LA+ ++  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  379  RQAEDMINIGAYKSGSNPKIDYAVAKMEQMIGYLKQDVGDEVNFEESIAALERIF  433
            ++ E +I IG Y+ G +   D A+    ++  +L+Q  ++    E  I  L++I+
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

396) sctN in NC_010530


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  301 bits (1129),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 187/345 (55%), Positives = 257/345 (75%), Gaps = 4/345 (1%)

Query  34   RGRVSKAVGMLINATGIQAHVGELCQLVTPGEPPLLAEVVGFVQQTALLTPLGRTTGVSA  93
            +GR+    + L+NA      +GELC  + PGE   LAEVVG+    ALL+P+  T+G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCC-IKPGEE--LAEVVGINGSKALLSPFTSTAGLHC  78

Query  94   LTEVIPSAHGHQCPAGAALLGRVLDALGEPIDGKGALDGVARVPVDNEPPDPLTRRLIRE  153
              +V++  + HQ P G ALLGRV+D++G P+DG+  L  V +   D  PP ++ R+ I +
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  154  PLATGVRAIDGLLTLGEGQRVGIFAPPGVGKSTLLGMLARGASSDVNVVALVGERGREVR  213
            PL TG+RAID++ T GEGQRVGIF++PGVGKSTLL+ML  ++ +D NV+ L+GERGREVR
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  214  EFIEYNLGSDGMARTVLVVSTSDRSPMERVRCAYTATAIAEHFRDQGRRVLLLVDSLTRL  273
            EFI++ L+ +   R V+VV+TSDR+++ERVR  + AT+IAE FRD+G+RV+LL DSLTR 
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  274  ARAQREIGLASGEPPTRRSYPPSVFSMLPQLLERAGTGVQGSITAAYTVLTEGEDDSDPI  333
            ARA REI+LA+GE +    YPP+VFS LP+LLER+G G +GSITA YTVL EG+D ++P+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  334  AEEVRSILDGHIVLSRKLASAGQYPPVDVLQSVSRVMPQVVAGAH  378
            A+EVRS+LDGHIVLSR+LA  G+YP++DVL ++SRV P V +  H
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEH  362

397) fliI in NC_010337


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  301 bits (1128),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 208/418 (50%), Positives = 296/418 (71%), Gaps = 9/418 (2%)

Query  18   GKVSQVIGLVIQSDGPSANLGEVCLVSTQSGKQRVRSEVVGFREGKTLLMPLGEMGGIGP  77
            G++ +V + ++++  P+  +GE+C    ++G +   +EVVG+  +K+LL P+   +G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELC--CIKPGEEL--AEVVGINGSKALLSPFTSTAGLHC  78

Query  78   GSQVLATGDVLTVAVGEALLGRVldglgnplddggpIATT-GDYPLTASPPNPLKRKRIQ  136
            G QV+A      V+VGEALLGRV+DG+G PLD+         DY   A PP ++ R+ I 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPIT  136

Query  137  QPLPLGVKAIDGLLTCGRGQRLGIFAGSGVGKSTLLGMIARNTTADINVIGLIGERGREV  196
            QPL  G++AID++ TCG GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  197  REFIEKDLGPEGLARSVVVVATSDQPALVRLKGAFVATAIAEFFRDLGKDVMLMMDSVTR  256
            REFI+  L+ E   R V+VVATSD+PAL R+++ FVAT+IAEFFRD GK V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  257  FAMAQREVGLAVGEPPATRGYTPSVFAMLPKLLERSGTSDKGTITGLYTVLVDGDDMNEP  316
            +A A RE++LA GE + +  Y P+VF+ LP+LLER+G ++KG+IT++YTVLV+GDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  317  IADAVRGILDGHIVLSRDLAAQNHYPAIDILSSVSRVMIELVSKEHRDAAAQLRSVLATY  376
            +AD VR++LDGHIVLSR LA + HYPAID+L+++SRV   + S EHR+ AA LR  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  377  REAKDLIDIGAYQKGANPQIDYSLKKI-DACREFLRQDIFEAIPFDETIGRLRDIFAA  433
            +E   LI IG YQ+G + + D ++    D C  FLRQ   E    +  I +L++I++ 
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDIC-TFLRQSKDEVCGPELLIEKLHQILTE  433

398) BTH_II0744 in NC_007650


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  301 bits (1129),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 212/433 (49%), Positives = 314/433 (73%), Gaps = 19/433 (4%)

Query  17   RLAIEPAVGMT--GKVLEVIGTLVRVVGLEATLGELCELRSASGALIQHAEVVGFTRNVA  74
            RL   P+ G    G++ +V +TL+        +GELC ++++     + AEVVG+  + A
Sbjct  10   RLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKA  65

Query  75   LLSPFGTLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDGRGEL------DYDA  128
            LLSPF + + ++ G +V++LRR   V VG+++LGRVID+FG P+DGR EL      DYDA
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDA  124

Query  129  LRPVIAPPPNPMSRRMVDASLATGVRIVDGLITLGEGQRMGIFAPAGVGKSTLLGMFARG  188
            +      PP +M R+ +  +L TG+R +D++ T GEGQR+GIF+++GVGKSTLL+M+  +
Sbjct  125  M------PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNA  178

Query  189  ASCDINVIALIgergrevrefveLIMGEDGMARSVVVCATSDRSSIERakaayaataiaE  248
            +  D NV+ LIGERGREVREF+++ ++E+   R V+V ATSDR+++ER +A + AT+IAE
Sbjct  179  PDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE  238

Query  249  YFRDQGKRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGERG  308
            +FRD+GKRV+L+ DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLERTGMGE+G
Sbjct  239  FFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKG  298

Query  309  SITALYTVLAEDDSGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSLSRIMPQIA  368
            SITA+YTVL E+D  ++P+A+EVR++LDGHI+LSR +A R +YPAIDVL++LSR+ P ++
Sbjct  299  SITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVT  358

Query  369  AREHVGAAGRLRQLLAKHREIETLLQLGEYQAGSDPAADEAVAKIDRIRAFLNQRTDEYS  428
            ++EH   A+ LR+ LA  +E+E L+++GEYQ G D  +D A+     I +FL Q  DE  
Sbjct  359  SHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

Query  429  PPDATLAALHELV  441
             P+  +  LH+++
Sbjct  419  GPELLIEKLHQIL  431

399) ROI_20930 in NC_021040


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  301 bits (1128),  Expect = 6e-83, Method: Compositional matrix adjust.
 Identities = 197/405 (49%), Positives = 287/405 (71%), Gaps = 9/405 (2%)

Query  16   FNRLGKVTKIVGLTIESVGPNAKLNDLCRIIIDREQNISTMAEVVGFRDKHLLLMPFESV  75
            + R G++  + +  +++  P   + +LC I  + E     +AEVVG+ +   LL PF S 
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGINGSKALLSPFTST  73

Query  76   EGIGVGCIVENTGHPLTVKVGEELLGHTLDGIGRPTDVEELS-LSY-DYPVEALPPDPMA  133
             G+  G  V    +   V VGE LLG+ +DG+GRP D  EL+ +   DY  +A+PP +M 
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMV  131

Query  134  RKIIDEVLPLGVKAVDGLITVGKGQRIGIFAGSGVGKSTLLGMFARNTKADINVIALIge  193
            R+ I + L  G++A+D++ T G GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  194  rgrevrefverDLGEEGMKRSVVIVATSDKPALIRNKAAKTATAIAEYFRDQGKDVLLMM  253
            RGREVREF++  L+EE  KR V++VATSD+PAL R +A   AT+IAE+FRD+GK V+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  254  DSLTRFSMAQREIGLASGEPPVTRGYPPSVYSEMPKLLERAGTSDKGSITGLYTVLVDGD  313
            DSLTR++ A REI+LA+GE +V+  YPP+V+S +P+LLER+G ++KGSIT++YTVLV+GD
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  314  DMNEPITDTARSILDGHIMLSRKLGQKNHYPAIDVLQSISRVMSSIATSEHKELAGKLRN  373
            DMNEP++D  RS+LDGHI+LSR+L+++ HYPAIDVL ++SRV + +++ EH++LA+ LR 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  374  VMATYNEAEDLINIGAYKNGTNREIDYAIQKNQAVNEFLMQKTDE  418
             +A Y+E E LI IG Y+ G + + D AI+    +  FL Q  DE
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

400) Calni_1784 in NC_014758


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  301 bits (1128),  Expect = 6e-83, Method: Compositional matrix adjust.
 Identities = 193/423 (46%), Positives = 290/423 (69%), Gaps = 12/423 (2%)

Query  1    MKSLELIKRIKL----SDQLTIYGKVTKIVGLTIEADGPLLGIGTRCLIENGSRNGILAE  56
            MK+ EL++R++L    +D     G++  + +  ++A  P + +G  C I  G     LAE
Sbjct  1    MKN-ELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAE  56

Query  57   IIGFKDDRIVLMPYGESEGIAPGSRVRNVSYGNSVKVTEKLLGRILDGLGNPIDDKGPIT  116
            ++G+++ + +L P+  + G+  G +V  +   + V V E LLGR++DG+G P+D++  + 
Sbjct  57   VVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LP  115

Query  117  DFELWPVYNE-PPKPLEREIIKDVIPTGVKAIDGLITVGNGQRVGIFAGSGVGKSVLLGM  175
            +   W  Y+  PP ++ R+ I + + TG++AID++ T G+GQRVGIF+++GVGKS LL+M
Sbjct  116  EVC-WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAM  174

Query  176  IARNTSAEVNVIALIGERGREVREFIERDLGEEGLKRSVIVVATSDQSPLVRKLGAFVAT  235
            +     A+ NV+ LIGERGREVREFI+  L+EE  KR VIVVATSD+++L R  + FVAT
Sbjct  175  LCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVAT  234

Query  236  TIAEYFRSTGKNVMFMMDSVTRFAMAQREIGLTVGEPPTSKGYTPSVFALLPKLLERAGT  295
            TIAE+FR  GK V+++ DS+TR+A A REI+L+ GE + S  Y P+VF+ LP+LLER+G 
Sbjct  235  TIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-  293

Query  296  KKGEGAVTGLYTVLVEGDDLTDPIADSVRSIIDGHIVLSRLLAARNHFPAIDVLMSASRL  355
                G++T++YTVLVEGDD+ +P+AD VRS++DGHIVLSR LA R H+PAIDVL + SR+
Sbjct  294  MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRV  353

Query  356  MKEIVTDEHFRLAGMMRDLMAAYNEAEDLINIGAYAKGSNKRIDTAIAKIDAINSFLRQG  415
               + ++EH +LA+++R  +A Y+E E LI IG Y +G +   D AI     I +FLRQ+
Sbjct  354  FPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

Query  416  IDE  418
             DE
Sbjct  414  KDE  416

401) hscN in NC_014366


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  301 bits (1127),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 203/403 (51%), Positives = 289/403 (72%), Gaps = 8/403 (1%)

Query  19   GRVVEAWGTLIHVTGVPAKIGDICRLRDPANGNELLAEAVGIKHHITLLNPLGTMEGVSN  78
            GR+ +  +TL++       +G++C ++    G+EL AE VGI+   +LL+P+ +  G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK---PGEEL-AEVVGINGSKALLSPFTSTAGLHC  78

Query  79   TMLVEVIEGASTVPVGRELLGRVLDSQGLPLDGKPPPNCAHRAAIYAAAPDP-MKRLPVD  137
               V  +     VPVG  LLGRV+D+ G PLDG+  P+   +   Y A P P M R P+ 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD--YDAMPPPAMVRQPIT  136

Query  138  KAFSTGVQAIDSMLTLGLGQRAGIFAMAGGGKSTLLGMLARGSESDVNVVVLIGERGREV  197
            +++ TG++AIDS+ T G GQR GIF+ +G GKSTLL+ML  ++++D NV+VLIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  198  REFIDESLGAEGLAKSVVLVSTSDRPALERCRVALVGTAIAEYFRDKGLRVLLMMDSVTR  257
            REFID +L+ E   + V++V+TSDRPALER R  +V+T+IAE+FRD+G RV+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  258  YARALRDIGLALGEPPVRRGFTPSVFSQLPRLFERAGNNEKGYITGIYTVLAEDEHDGED  317
            YARA R+I+LA GE +V   + P+VFS LPRL+ER+G  EKG IT++YTVL E++ D ++
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD-DMNE  315

Query  318  PVTEEVRSLLDGHIVLSRKLAAAAHYPAIDVLASASRVMHNVTTPEHRQKAARVRALMSK  377
            P+++EVRSLLDGHIVLSR+LA  +HYPAIDVLA+ SRV   VT+ EHRQ AA +R  ++ 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  378  YKEVELLLQVGEYKKGTDGQADDAIRAAPMIGGLLKQDSTVVT  420
            Y+EVELL+++GEY++G D ++D AI + P I  +L+Q    V 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

402) rscN in NC_017911


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  301 bits (1127),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 208/420 (50%), Positives = 299/420 (72%), Gaps = 13/420 (3%)

Query  29   RGRIQRVNGMLLQCRLPQARIGDLCQVEKGPGDFMLAEIIGFDQQDAVLSALGNLEGVRV  88
            +GRIQ V++ LL+ +LP   +G+LC +  G     LAE++G++   A+LS++ +  G++ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHC  78

Query  89   GAGVERLGVSHRVQVSEALLGQVLDGFGRPITGQGASAFVEAELPDTSAVLCEAPLPTE-  147
            G  V  L   H+V V+EALLG+V+DGFGRP+ G+        ELP+      +A  P   
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR--------ELPEVCWKDYDAMPPPAM  130

Query  148  -RPRINRALATGVRSIDGLMTLGEGQRVGLFAGAGCGKTTLLAEIARNVECDVIVFGLIG  206
             R  I ++L TG+R+ID++ T GEGQRVG+F+++G GK+TLLA +    + D  V+ LIG
Sbjct  131  VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG  190

Query  207  ERGRELREFLDHELDEQLRSKAVLVCATSDRSSMEraraaftatalaEGFRRKGQRVLLL  266
            ERGRE+REF+D  L E+ R + V+V ATSDR+++ER RA F AT++AE FR +G+RV+LL
Sbjct  191  ERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLL  250

Query  267  IDSLTRFARAQREIGLAAGEPLGRGGLPPSVYSLLPRLVERAGLTRDGVITAIYTVLIEQ  326
             DSLTR+ARA REI+LAAGE    G  PP+V+S LPRL+ER+G+   G ITA+YTVL+E 
Sbjct  251  ADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEG  310

Query  327  DSMNDPVADEVRSLLDGHIVLSRKLAERGHYPAVDVLASLSRILSNVAEPADIQAGTALR  386
            D MN+P+ADEVRSLLDGHIVLSR+LAERGHYPA+DVLA+LSR+++ V+   + Q ++ LR
Sbjct  311  DDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILR  370

Query  387  RLLSAYQQIELMLKLGEYQPGSDALTDLAVNSRQAVDGFLRQDLREPTPMAVTLEQLKEL  446
            R L+ YQ++EL++++GEYQ G D+ TD A+++   +  FLRQ   E     + +E+L ++
Sbjct  371  RRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

403) Ppro_3429 in NC_008609


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  301 bits (1127),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 192/419 (46%), Positives = 294/419 (71%), Gaps = 12/419 (2%)

Query  25   GKVTQVVGLVIEGYCPDTSVGAICEIRPQVGEPIPAEVVGFRNNKTLLMPLGELRGVGLD  84
            G++ +V + ++++  P+  +G +C I+P  GE + AEVVG+  +K+LL P+      GL+
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKP--GEEL-AEVVGINGSKALLSPFTS--TAGLH  77

Query  85   S---LISIRREQASMGVGPLMLGRVIDGLGNPIDDRG-PLHVEEEYPIYATPVNPMTRPP  140
                ++++RR +  + VG  +LGRVIDG+G P+D+R  P     +Y   A P  +M R P
Sbjct  78   CGQQVMALRRRHQ-VPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQP  134

Query  141  IRKPLDLGIRSINGLLTCGQGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGR  200
            I +PL  GIR+I+++ TCG+GQRVGI +++GVGKSTLL+M+    +AD NV+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  201  ELREFIEKDLQEIGLKKSVVVVATSDQPPLVRMRGAYIATTIAEYFQKQGKKVLLMMDSV  260
            E+REFI+  L E   K+ V+VVATSD+P+L R+R+ ++ATTIAE+F+ +GK+V+L+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  261  TRFAMAMREVGLAIGEPPTTKGYTPSVFAALPKLLERAGNFTDGSITGLYTVLVEGDDFN  320
            TR+A A RE++LA GE + +  Y P+VF+ALP+LLER+G    GSIT++YTVLVEGDD N
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  321  EPISDAVRSILDGHIVLTRNLASRNIYPPIDILASASRVMNDVTVTDHQELVGKFKEAMA  380
            EP++D VRS+LDGHIVL+R LA R  YP+ID+LA+ SRV   VT  +H++L + ++  +A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  TYRQSEDLINIGAYKSGSNPGIDYAISKMDGMTAYLKQAVRDPANLQESVESLKALFQD  439
             Y++ E LI IG Y+ G + + D AI    ++ ++L+Q+  +    +  +E L  ++ +
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

404) fliI in NC_018065


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  301 bits (1127),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 194/422 (46%), Positives = 282/422 (67%), Gaps = 9/422 (2%)

Query  3    MAQLVEQIPNLNTFKKYGRVTRVVGLMIESQGPESSIGDVCKIHIQTSKNGPQVMLAEVV  62
            M +L  + P  + + + GR+  V + ++++  P   +G++C I     K G +  LAEVV
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI-----KPGEE--LAEVV  58

Query  63   GFKDEIVILMPYSSLKEISIGCLVEGTGSPLEVKVGPELIGKVLDAMGNPFDGQPLPKGL  122
            G+++   +L P++S   +  G  V +     +V VG  L+G+V+D+ G P+DG+ LP  +
Sbjct  59   GINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-EV  117

Query  123  MTVPTEKEPPNPLSRPPINEQLEVGVKAIDGMLTVGSGQRVGIFAGSGVGKSTLLGMIAR  182
                 +  PP ++ R PI + L  G++AID++ T G GQRVGIF+++GVGKSTLL+M+  
Sbjct  118  CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  183  NTEADINVIALVGERGREVREFIERDLGPEGLQRSVVVAATSDQPALMRIKAAFTATAIA  242
              +AD NV+ L+GERGREVREFI+  L+ E  +R V+V ATSD+PAL R++A F AT+IA
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  243  EYFRDRGKNVMLMMDSVTRVAMAQREIGLAIGEPPATRGYTPSVFAILPTLLERSGTNIN  302
            E+FRD GK V+L+ DS+TR A A REI+LA GE + +  Y P+VF+ LP LLER+G   +
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK  297

Query  303  GTITAFYTVLVDGDDMNEPIADAVRGILDGHIVLDRNLANKGQYPAINILKSVSRLMNHI  362
            G+ITAFYTVLV+GDDMNEP+AD VR++LDGHIVL R LA++G+YPAI++L ++SR+   +
Sbjct  298  GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVV  357

Query  363  AQPEHVRAASRLRELYYSYSKSEDLINIGAYKRGTSKEIDEAIMYEPLITEFLKQGYKDK  422
            +  EH + A+ LR     Y   E LI IG Y+RG   + D AI   P I  FL+Q+ KD 
Sbjct  358  TSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS-KDE  416

Query  423  IS  424
            + 
Sbjct  417  VC  418

405) bglu_2g02440 in NC_012721


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  301 bits (1126),  Expect = 8e-83, Method: Compositional matrix adjust.
 Identities = 191/395 (49%), Positives = 286/395 (73%), Gaps = 5/395 (1%)

Query  31   RTGKVMEVVGTVIKVSGLDVTLGELCELRAPDGTLLQRAEVVGFTRDVALLSPFSRLENV  90
            R G++ +V +T+++    +V +GELC +++ +    + AEVVG+    ALLSPF+    +
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  91   SRATQVIGLGRPLSIQVGDQLLGRVLDGLGEPIDGGPPLDSDDWRPVIVQPPDPMKRRMV  150
              + QV++L R   + VG+ LLGRV+DG+G P+DG   L    W+     PP +M R+ +
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPI  135

Query  151  DTPMPTGVRVVDAMMTLGEGQRMGIFAPAGVGKSTLMGMFARGAACDINVIALIGERGRE  210
              P+ TG+R +D++ T GEGQR+GIF+++GVGKSTL++M+  ++  D NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  211  VREFIELILGPEGMARSVVVCATSDRSSMERakaahtataiaEYFRDRGLRVLLMMDSLT  270
            VREFI++ L+ E   R V+V ATSDR+++ER +A   AT+IAE+FRD G RV+L+ DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  271  RFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGATGSITALYTVLAEDETGGD  330
            R+ARA+REI+LAAGE +    +PP+VF+ LPRLLERTGMG  GSITA+YTVL E++   +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  331  PVAEEVRGILDGHMILSREIAAKNQYPAIDVLGSLSRVMSLVVPDAHARAASRIRELMAK  390
            P+A+EVR++LDGH++LSR +A + +YPAIDVL++LSRV ++V ++ H + A+ +R  +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  391  HREVEVLLQVGEYQPGQNPLADEAIQKADAIRAFL  425
             +EVE+L+++GEYQ G +  +D AI+    I +FL
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

406) BP1026B_II1737 in NC_017832


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  301 bits (1126),  Expect = 9e-83, Method: Compositional matrix adjust.
 Identities = 211/427 (50%), Positives = 309/427 (73%), Gaps = 7/427 (1%)

Query  17   RLAIEPAVGMT--GKVLEVIGTLVRVVGLEATLGELCELRGASGALIQHAEVVGFTRNVA  74
            RL   P+ G    G++ +V +TL+        +GELC ++ +     + AEVVG+  + A
Sbjct  10   RLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKA  65

Query  75   LLSPFGTLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDGRGELDYDALRPVIA  134
            LLSPF + + ++ G +V++LRR   V VG+++LGRVID+FG P+DGR EL     +   A
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDA  124

Query  135  APPNPMSRRMVDASLATGVRIVDGLITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVN  194
             PP +M R+ +  +L TG+R +D++ T GEGQR+GIF+++GVGKSTLL+M+  ++  D N
Sbjct  125  MPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN  184

Query  195  VIALIgergrevrefveLIMGEDGMARSVVVCATSDRSSIERakaayaataiaEYFRDQG  254
            V+ LIGERGREVREF+++ ++E+   R V+V ATSDR+++ER +A + AT+IAE+FRD+G
Sbjct  185  VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNG  244

Query  255  KRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGEHGSITALY  314
            KRV+L+ DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLERTGMGE GSITA+Y
Sbjct  245  KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFY  304

Query  315  TVLAEDDSGSDPIAEEVRGILDGHIVLSREIAARNQYPAIDVLGSLSRIMPQVATREHVG  374
            TVL E+D  ++P+A+EVR++LDGHIVLSR +A R +YPAIDVL++LSR+ P V+++EH  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  375  AAGRLRQLLAKHREIETLLQLGEYQAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATL  434
             A+ LR+ LA  +E+E L+++GEYQ G D  +D A+     I +FL Q  DE   P+  +
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLI  424

Query  435  AALHELV  441
              LH+++
Sbjct  425  EKLHQIL  431

407) Mmc1_0272 in NC_008576


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  301 bits (1126),  Expect = 9e-83, Method: Compositional matrix adjust.
 Identities = 196/420 (47%), Positives = 290/420 (70%), Gaps = 5/420 (1%)

Query  30   GFHRLGWVKKVVGLLIEGNGPAVSIGQMCDVVRENGEVVKAEVVGFRDKSVLLMPLGSIK  89
            G+ R G+++ V + L+++  P+V +G++C  ++   E+  AEVVG+ +   LL P+ S  
Sbjct  18   GYCRWGRIQDVSATLLNAWLPGVFMGELC-CIKPGEEL--AEVVGINGSKALLSPFTSTA  74

Query  90   GIFPGSRIISQGRAEQVPVGPQLLGRVIGPMGEALDGHALPHLDDHVPLHAAPINPMLRR  149
            G+  G ++++  R +QVPVG  LLGRVI+  G +LDG+ LP++      +A P  +M+R+
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-WKDYDAMPPPAMVRQ  133

Query  150  KIEEPLDLGVRAVNSLLTVGRGQRLGIFAGTGVGKSTLLGMMARYTAADINVIALIGERG  209
             I +PL  G+RA++S+ T G GQR+GIF++ GVGKSTLL+M+     AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  210  REVVEFIEDELGPEGMARSIVIVATSDQPPLLRLRAAYMATAIAEFFRAQQKDVLLLMDS  269
            REV EFI+  L+ E   R +++VATSD+P+L R+RA ++AT+IAEFFR + K V+LL DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  270  ITRFAMAQREVGLATGEPPTSRGYPPSTFMLLPRLLERGGRDQGRGSITSIYTVLMEGDD  329
            +TR+A A RE++LA+GE + S  YPP+ F  LPRLLER G ++ +GSIT++YTVL+EGDD
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGSITAFYTVLVEGDD  312

Query  330  IQDPIVDAVRGILDGHIVLSRDLAAANHYPAIDVNGSLSRLMEGLSEKAHKRAAGQLREI  389
            +++P+ D VR++LDGHIVLSR LA   HYPAIDV ++LSR+   ++   H++ A+ LR  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  390  LATYVKAEDMINIGAYVAGSNPRIDRAIRFIEPIRTFLKQSVEEPSTLEESIAQLESLFA  449
            LA Y   E +I IG Y  G +   D+AI     I TFL+QS +E    E  I +L+ +++
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

408) fliI in NC_016943


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  300 bits (1124),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 194/386 (51%), Positives = 270/386 (70%), Gaps = 8/386 (2%)

Query  40   VGDLVEIDPTGKPLLAEVVAV--GRDRLTCMPLGGLSGVHAGAPVRATGRPLQVPVGEAL  97
            +G+L  I P     LAEVV++  ++  L+  P+ + +G+H G  V A  R  QVPVGEAL
Sbjct  42   MGELCCIKPGEE--LAEVVGINGSKALLS--PFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  98   LGRVLDGLGRPVDGGPPLGGLASWVDLETRTPHALSRARVAEPLTFGVRALDTLVPCGKG  157
            LGRV+DG+GRP+DG   L  +  W D ++  P A+ R  +++PL  G+RA+D++  CG G
Sbjct  98   LGRVIDGFGRPLDG-RELPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  158  QRLGIFAGSGVGKSSLLAQITRGTDADVRVIGLIGERGREVREFIEENLGPEGMARTVVV  217
            QR+GIF+++GVGKS+LLA +  + DAD  V+ LIGERGREVREFI+  L+ E   R V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  218  VATSDEPPLVRLKAAFVATRIAEAFRDEGRDVLLLMDSITRTAMAQREVGLSAGEPPATR  277
            VATSD P+L R++A FVAT IAE FRD+G+ V+LL DS+TR A A RE++L+AGE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  278  GYPPSVFAMMPQLLEKAGTGATGSITGLYTVLVEGDDHNEPIADTARSILDGHVVLTRTL  337
             YPP+VF+ +P+LLE++G G  GSIT++YTVLVEGDD NEP+AD  RS+LDGH+VL+R L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  338  ATTGHFPAIDVLESISRVAGAVVPPAQMADAREVRRLMGALRDVRELIEIGAYQAGSDPL  397
            A  GH+PAIDVL ++SRV   V +  +   A  +RR ++  ++V  LI IG YQ G D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  398  VDRARQLAPTIDAFLQQPMGESTPPA  423
             D+A +  P I +FL+Q+ +E   P 
Sbjct  396  TDKAIDTYPDICTFLRQSKDEVCGPE  421

409) sctN in NC_006349


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  300 bits (1124),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 210/427 (50%), Positives = 309/427 (73%), Gaps = 7/427 (1%)

Query  4    RLAIEPAVGMT--GKVLEVIGTLVRVVGLEATLGELCELRGASGALIQHAEVVGFTRNVA  61
            RL   P+ G    G++ +V +TL+        +GELC ++ +     + AEVVG+  + A
Sbjct  10   RLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKA  65

Query  62   LLSPFGTLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDGRGELDYDALRPVIA  121
            LLSPF + + ++ G +V++LRR   V VG+++LGRVID+FG P+DGR EL     +   A
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDA  124

Query  122  APPNPMSRRMVDASLATGVRIVDGLITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVN  181
             PP +M R+ +  +L TG+R +D++ T GEGQR+GIF+++GVGKSTLL+M+  ++  D N
Sbjct  125  MPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN  184

Query  182  VIALIgergrevrefveLIMGEDGMARSVVVCATSDRSSIERakaayaataiaEYFRDQG  241
            V+ LIGERGREVREF+++ ++E+   R V+V ATSDR+++ER +A + AT+IAE+FRD+G
Sbjct  185  VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNG  244

Query  242  KRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGEHGSITALY  301
            KRV+L+ DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLERTGMGE GSITA+Y
Sbjct  245  KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFY  304

Query  302  TVLAEDDSGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSLSRIMPQVATREHVG  361
            TVL E+D  ++P+A+EVR++LDGHI+LSR +A R +YPAIDVL++LSR+ P V+++EH  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  362  AAGRLRQLLAKHREIETLLQLGEYQAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATL  421
             A+ LR+ LA  +E+E L+++GEYQ G D  +D A+     I +FL Q  DE   P+  +
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLI  424

Query  422  AALHELV  428
              LH+++
Sbjct  425  EKLHQIL  431

410) sctN in NC_008835


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  300 bits (1125),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 210/427 (50%), Positives = 309/427 (73%), Gaps = 7/427 (1%)

Query  17   RLAIEPAVGMT--GKVLEVIGTLVRVVGLEATLGELCELRGASGALIQHAEVVGFTRNVA  74
            RL   P+ G    G++ +V +TL+        +GELC ++ +     + AEVVG+  + A
Sbjct  10   RLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKA  65

Query  75   LLSPFGTLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDGRGELDYDALRPVIA  134
            LLSPF + + ++ G +V++LRR   V VG+++LGRVID+FG P+DGR EL     +   A
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDA  124

Query  135  APPNPMSRRMVDASLATGVRIVDGLITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVN  194
             PP +M R+ +  +L TG+R +D++ T GEGQR+GIF+++GVGKSTLL+M+  ++  D N
Sbjct  125  MPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN  184

Query  195  VIALIgergrevrefveLIMGEDGMARSVVVCATSDRSSIERakaayaataiaEYFRDQG  254
            V+ LIGERGREVREF+++ ++E+   R V+V ATSDR+++ER +A + AT+IAE+FRD+G
Sbjct  185  VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNG  244

Query  255  KRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGEHGSITALY  314
            KRV+L+ DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLERTGMGE GSITA+Y
Sbjct  245  KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFY  304

Query  315  TVLAEDDSGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSLSRIMPQVATREHVG  374
            TVL E+D  ++P+A+EVR++LDGHI+LSR +A R +YPAIDVL++LSR+ P V+++EH  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  375  AAGRLRQLLAKHREIETLLQLGEYQAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATL  434
             A+ LR+ LA  +E+E L+++GEYQ G D  +D A+     I +FL Q  DE   P+  +
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLI  424

Query  435  AALHELV  441
              LH+++
Sbjct  425  EKLHQIL  431

411) sctN in NC_009079


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  300 bits (1125),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 210/427 (50%), Positives = 309/427 (73%), Gaps = 7/427 (1%)

Query  17   RLAIEPAVGMT--GKVLEVIGTLVRVVGLEATLGELCELRGASGALIQHAEVVGFTRNVA  74
            RL   P+ G    G++ +V +TL+        +GELC ++ +     + AEVVG+  + A
Sbjct  10   RLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKA  65

Query  75   LLSPFGTLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDGRGELDYDALRPVIA  134
            LLSPF + + ++ G +V++LRR   V VG+++LGRVID+FG P+DGR EL     +   A
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDA  124

Query  135  APPNPMSRRMVDASLATGVRIVDGLITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVN  194
             PP +M R+ +  +L TG+R +D++ T GEGQR+GIF+++GVGKSTLL+M+  ++  D N
Sbjct  125  MPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN  184

Query  195  VIALIgergrevrefveLIMGEDGMARSVVVCATSDRSSIERakaayaataiaEYFRDQG  254
            V+ LIGERGREVREF+++ ++E+   R V+V ATSDR+++ER +A + AT+IAE+FRD+G
Sbjct  185  VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNG  244

Query  255  KRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGEHGSITALY  314
            KRV+L+ DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLERTGMGE GSITA+Y
Sbjct  245  KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFY  304

Query  315  TVLAEDDSGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSLSRIMPQVATREHVG  374
            TVL E+D  ++P+A+EVR++LDGHI+LSR +A R +YPAIDVL++LSR+ P V+++EH  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  375  AAGRLRQLLAKHREIETLLQLGEYQAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATL  434
             A+ LR+ LA  +E+E L+++GEYQ G D  +D A+     I +FL Q  DE   P+  +
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLI  424

Query  435  AALHELV  441
              LH+++
Sbjct  425  EKLHQIL  431

412) BURPS1106A_A2205 in NC_009078


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  300 bits (1125),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 210/427 (50%), Positives = 309/427 (73%), Gaps = 7/427 (1%)

Query  17   RLAIEPAVGMT--GKVLEVIGTLVRVVGLEATLGELCELRGASGALIQHAEVVGFTRNVA  74
            RL   P+ G    G++ +V +TL+        +GELC ++ +     + AEVVG+  + A
Sbjct  10   RLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKA  65

Query  75   LLSPFGTLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDGRGELDYDALRPVIA  134
            LLSPF + + ++ G +V++LRR   V VG+++LGRVID+FG P+DGR EL     +   A
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDA  124

Query  135  APPNPMSRRMVDASLATGVRIVDGLITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVN  194
             PP +M R+ +  +L TG+R +D++ T GEGQR+GIF+++GVGKSTLL+M+  ++  D N
Sbjct  125  MPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN  184

Query  195  VIALIgergrevrefveLIMGEDGMARSVVVCATSDRSSIERakaayaataiaEYFRDQG  254
            V+ LIGERGREVREF+++ ++E+   R V+V ATSDR+++ER +A + AT+IAE+FRD+G
Sbjct  185  VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNG  244

Query  255  KRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGEHGSITALY  314
            KRV+L+ DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLERTGMGE GSITA+Y
Sbjct  245  KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFY  304

Query  315  TVLAEDDSGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSLSRIMPQVATREHVG  374
            TVL E+D  ++P+A+EVR++LDGHI+LSR +A R +YPAIDVL++LSR+ P V+++EH  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  375  AAGRLRQLLAKHREIETLLQLGEYQAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATL  434
             A+ LR+ LA  +E+E L+++GEYQ G D  +D A+     I +FL Q  DE   P+  +
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLI  424

Query  435  AALHELV  441
              LH+++
Sbjct  425  EKLHQIL  431

413) BURPS1710b_A0686 in NC_007435


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  300 bits (1123),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 213/432 (50%), Positives = 311/432 (72%), Gaps = 19/432 (4%)

Query  17   RLAIEPAVGMT--GKVLEVIGTLVRVVGLEATLGELCELRGASGALIQHAEVVGFTRNVA  74
            RL   P+ G    G++ +V +TL+        +GELC ++ +     + AEVVG+  + A
Sbjct  10   RLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKA  65

Query  75   LLSPFGTLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDGRGEL------DYDA  128
            LLSPF + + ++ G +V++LRR   V VG+++LGRVID+FG P+DGR EL      DYDA
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDA  124

Query  129  LRPVLAAPPNPMSRRMVDASLATGVRIVDGLITLGEGQRMGIFAPAGVGKSTLLGMFARG  188
            +      PP +M R+ +  +L TG+R +D++ T GEGQR+GIF+++GVGKSTLL+M+  +
Sbjct  125  M------PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNA  178

Query  189  ASCDVNVIALIgergrevrefveLIMGEDGMARSVVVCATSDRSSIERakaayaataiaE  248
            +  D NV+ LIGERGREVREF+++ ++E+   R V+V ATSDR+++ER +A + AT+IAE
Sbjct  179  PDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE  238

Query  249  YFRDQGKRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGEHG  308
            +FRD+GKRV+L+ DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLERTGMGE G
Sbjct  239  FFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKG  298

Query  309  SITALYTVLAEDDSGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSLSRIMPQVA  368
            SITA+YTVL E+D  ++P+A+EVR++LDGHI+LSR +A R +YPAIDVL++LSR+ P V+
Sbjct  299  SITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVT  358

Query  369  TREHVGAAGRLRQLLAKHREIETLLQLGEYQAGSDPAADEAVAKIDRIRAFLNQRTDEYS  428
            ++EH   A+ LR+ LA  +E+E L+++GEYQ G D  +D A+     I +FL Q  DE  
Sbjct  359  SHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

Query  429  PPDATLAALHEL  440
             P+  +  LH++
Sbjct  419  GPELLIEKLHQI  430

414) BURPS668_A2288 in NC_009075


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  300 bits (1125),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 209/426 (50%), Positives = 309/426 (73%), Gaps = 7/426 (1%)

Query  17   RLAIEPAVGMT--GKVLEVIGTLVRVVGLEATLGELCELRGASGALIQHAEVVGFTRNVA  74
            RL   P+ G    G++ +V +TL+        +GELC ++ +     + AEVVG+  + A
Sbjct  10   RLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKA  65

Query  75   LLSPFGTLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDGRGELDYDALRPVIA  134
            LLSPF + + ++ G +V++LRR   V VG+++LGRVID+FG P+DGR EL     +   A
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDA  124

Query  135  APPNPMSRRMVDASLATGVRIVDGLITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVN  194
             PP +M R+ +  +L TG+R +D++ T GEGQR+GIF+++GVGKSTLL+M+  ++  D N
Sbjct  125  MPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN  184

Query  195  VIALIgergrevrefveLIMGEDGMARSVVVCATSDRSSIERakaayaataiaEYFRDQG  254
            V+ LIGERGREVREF+++ ++E+   R V+V ATSDR+++ER +A + AT+IAE+FRD+G
Sbjct  185  VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNG  244

Query  255  KRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGEQGSITALY  314
            KRV+L+ DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLERTGMGE+GSITA+Y
Sbjct  245  KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFY  304

Query  315  TVLAEDDSGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSLSRIMPQIATREHVG  374
            TVL E+D  ++P+A+EVR++LDGHI+LSR +A R +YPAIDVL++LSR+ P ++++EH  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  375  AAGRLRQLLAKHREIETLLQLGEYQAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATL  434
             A+ LR+ LA  +E+E L+++GEYQ G D  +D A+     I +FL Q  DE   P+  +
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLI  424

Query  435  AALHEL  440
              LH++
Sbjct  425  EKLHQI  430

415) BPC006_II2184 in NC_018529


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  300 bits (1125),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 210/427 (50%), Positives = 309/427 (73%), Gaps = 7/427 (1%)

Query  17   RLAIEPAVGMT--GKVLEVIGTLVRVVGLEATLGELCELRGASGALIQHAEVVGFTRNVA  74
            RL   P+ G    G++ +V +TL+        +GELC ++ +     + AEVVG+  + A
Sbjct  10   RLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKA  65

Query  75   LLSPFGTLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDGRGELDYDALRPVIA  134
            LLSPF + + ++ G +V++LRR   V VG+++LGRVID+FG P+DGR EL     +   A
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDA  124

Query  135  APPNPMSRRMVDASLATGVRIVDGLITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVN  194
             PP +M R+ +  +L TG+R +D++ T GEGQR+GIF+++GVGKSTLL+M+  ++  D N
Sbjct  125  MPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN  184

Query  195  VIALIgergrevrefveLIMGEDGMARSVVVCATSDRSSIERakaayaataiaEYFRDQG  254
            V+ LIGERGREVREF+++ ++E+   R V+V ATSDR+++ER +A + AT+IAE+FRD+G
Sbjct  185  VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNG  244

Query  255  KRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGEHGSITALY  314
            KRV+L+ DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLERTGMGE GSITA+Y
Sbjct  245  KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFY  304

Query  315  TVLAEDDSGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSLSRIMPQVATREHVG  374
            TVL E+D  ++P+A+EVR++LDGHI+LSR +A R +YPAIDVL++LSR+ P V+++EH  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  375  AAGRLRQLLAKHREIETLLQLGEYQAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATL  434
             A+ LR+ LA  +E+E L+++GEYQ G D  +D A+     I +FL Q  DE   P+  +
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLI  424

Query  435  AALHELV  441
              LH+++
Sbjct  425  EKLHQIL  431

416) BPSS1627 in NC_006351


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  300 bits (1123),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 213/432 (50%), Positives = 311/432 (72%), Gaps = 19/432 (4%)

Query  17   RLAIEPAVGMT--GKVLEVIGTLVRVVGLEATLGELCELRGASGALIQHAEVVGFTRNVA  74
            RL   P+ G    G++ +V +TL+        +GELC ++ +     + AEVVG+  + A
Sbjct  10   RLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKA  65

Query  75   LLSPFGTLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDGRGEL------DYDA  128
            LLSPF + + ++ G +V++LRR   V VG+++LGRVID+FG P+DGR EL      DYDA
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDA  124

Query  129  LRPVLAAPPNPMSRRMVDASLATGVRIVDGLITLGEGQRMGIFAPAGVGKSTLLGMFARG  188
            +      PP +M R+ +  +L TG+R +D++ T GEGQR+GIF+++GVGKSTLL+M+  +
Sbjct  125  M------PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNA  178

Query  189  ASCDVNVIALIgergrevrefveLIMGEDGMARSVVVCATSDRSSIERakaayaataiaE  248
            +  D NV+ LIGERGREVREF+++ ++E+   R V+V ATSDR+++ER +A + AT+IAE
Sbjct  179  PDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE  238

Query  249  YFRDQGKRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGEHG  308
            +FRD+GKRV+L+ DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLERTGMGE G
Sbjct  239  FFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKG  298

Query  309  SITALYTVLAEDDSGSDPIAEEVRGILDGHIILSREIAARNQYPAIDVLGSLSRIMPQVA  368
            SITA+YTVL E+D  ++P+A+EVR++LDGHI+LSR +A R +YPAIDVL++LSR+ P V+
Sbjct  299  SITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVT  358

Query  369  TREHVGAAGRLRQLLAKHREIETLLQLGEYQAGSDPAADEAVAKIDRIRAFLNQRTDEYS  428
            ++EH   A+ LR+ LA  +E+E L+++GEYQ G D  +D A+     I +FL Q  DE  
Sbjct  359  SHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

Query  429  PPDATLAALHEL  440
             P+  +  LH++
Sbjct  419  GPELLIEKLHQI  430

417) BDL_4981 in NC_021877


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  300 bits (1125),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 214/433 (50%), Positives = 312/433 (73%), Gaps = 19/433 (4%)

Query  17   RLAIEPAVGMT--GKVLEVIGTLVRVVGLEATLGELCELRGASGALIQHAEVVGFTRNVA  74
            RL   P+ G    G++ +V +TL+        +GELC ++ +     + AEVVG+  + A
Sbjct  10   RLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKA  65

Query  75   LLSPFGTLGEINRGTRVIGLRRPLSVKVGNGILGRVIDSFGEPIDGRGEL------DYDA  128
            LLSPF + + ++ G +V++LRR   V VG+++LGRVID+FG P+DGR EL      DYDA
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDA  124

Query  129  LRPVLAAPPNPMSRRMVDASLATGVRIVDGLITLGEGQRMGIFAPAGVGKSTLLGMFARG  188
            +      PP +M R+ +  +L TG+R +D++ T GEGQR+GIF+++GVGKSTLL+M+  +
Sbjct  125  M------PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNA  178

Query  189  ASCDVNVIALIgergrevrefveLIMGEDGMARSVVVCATSDRSSIERakaayaataiaE  248
            +  D NV+ LIGERGREVREF+++ ++E+   R V+V ATSDR+++ER +A + AT+IAE
Sbjct  179  PDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE  238

Query  249  YFRDQGKRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGEHG  308
            +FRD+GKRV+L+ DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLERTGMGE G
Sbjct  239  FFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKG  298

Query  309  SITALYTVLAEDDSGSDPIAEEVRGILDGHIVLSREIAARNQYPAIDVLGSLSRIMPQVA  368
            SITA+YTVL E+D  ++P+A+EVR++LDGHIVLSR +A R +YPAIDVL++LSR+ P V+
Sbjct  299  SITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVT  358

Query  369  TREHVGAAGRLRQLLAKHREIETLLQLGEYQAGSDPAADEAVAKIDRIRAFLNQRTDEYS  428
            ++EH   A+ LR+ LA  +E+E L+++GEYQ G D  +D A+     I +FL Q  DE  
Sbjct  359  SHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

Query  429  PPDATLAALHELV  441
             P+  +  LH+++
Sbjct  419  GPELLIEKLHQIL  431

418) Thein_1815 in NC_015681


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  300 bits (1124),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 201/429 (47%), Positives = 299/429 (70%), Gaps = 12/429 (2%)

Query  13   VKNVEPVSVC--GQVKRVVGLVVEAQGPNVSVGGLCEIEVSNGQNILAEVVGFKDERVLL  70
            +K   P + C  G+++ V + +++A  P V +G LC I  ++    LAEVVG+++ + LL
Sbjct  11   LKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALL  67

Query  71   IPFGDPRGIEPGSKVY-WRRESGVRVGEALLGRVIDALGKPLDGRKLPPLEDVYPIHAEP  129
             PF    G++ G +V   RR   V VGEALLGRVID++G+PLDGR LP   +V   + ++
Sbjct  68   SPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP---EVCWKDYDA  124

Query  130  LKP--FERARIEEPLDVGVRAINALLTVGKGQRIAIMAGSGVGKSTLLGMMARHTKADVN  187
            + P    R  I +PL  G+RAI+++ T G GQR++I +++GVGKSTLL+M+     AD N
Sbjct  125  MPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN  184

Query  188  VIALIGERGREVREFLERDLGEDGLKRSVVVVATSDQPPPLRLRGAYLAMAVAEFFRDKG  247
            V+ LIGERGREVREF++  L+E+  KR V+VVATSD+P+  R+R+ ++A ++AEFFRD+G
Sbjct  185  VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNG  244

Query  248  ADVLLMMDSLTRFCMAGREVGLAIGEPPTARGYTPSVFAALPRLLERPGPSARGGSITGI  307
              V+L+ DSLTR+  A+RE++LA GE + +  Y P+VF+ALPRLLER G + + GSIT++
Sbjct  245  KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAF  303

Query  308  FTVLVEGDDFNEPVADAVRSIVDGHICLTRELAHQGHYPAIDILQSISRVMKDIVSQEQI  367
            +TVLVEGDD NEP+AD VRS++DGHI L+R LA++GHYPAID+L ++SRV   + S+E+ 
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  368  EAAKELVNILAIYRKAEDLINIGAYVKGSNPQIDRALNKIEVINSFLRQNIDEKADFETS  427
            + A  L   LA+Y+  E LI IG Y +G + + D+A++    I +FLRQ+ DE  + E  
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELL  423

Query  428  VKRLIEVVK  436
            + +L +++ 
Sbjct  424  IEKLHQILT  432


 Score = 28.5 bits (88),  Expect = 0.91, Method: Compositional matrix adjust.
 Identities = 10/54 (19%), Positives = 33/54 (62%), Gaps = 0/54 (0%)

Query  1    MKVPDLSQFLTAVKNVEPVSVCGQVKRVVGLVVEAQGPNVSVGGLCEIEVSNGQ  54
            ++ P    ++T+++ +++V+ CG+ +RV  +   + G +  ++ LC+   ++++
Sbjct  131  VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN  184

419) fliI in NC_015921


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  300 bits (1123),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 178/417 (43%), Positives = 294/417 (71%), Gaps = 9/417 (2%)

Query  22   GRVQKIKGLLVESLGPQCAIGDLCLIDQRNDKKVCAEVLGFNGPYVSLMAYEGFSGIEVG  81
            GR+Q + + L+++  P   +G+LC I   ++    AEV+G+NG+   L ++ + +G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   NKVYSLNKGLEINLSDELLGRVIDSLGRPIDNKGSFLNNSYKELIFEKINP--INRSIFE  139
            ++V +L +  ++ +++ LLGRVID++GRP+D +  + +   K+  ++ + P  + R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKD--YDAMPPPAMVRQPIT  136

Query  140  EQILTGVKVLDGFLPVAKGQRVGIFSGSGVGKSTLLGMIAKNSNADVNVIAFIGERGREL  199
            + ++TG++ +D+    + GQRVGIFS++GVGKSTLL+M+ + ++AD NV+ +IGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  NEFIEYELGEERLKKSVLVVSTSDESPISRYKGAYVATMIAEYFREQGKDVVLLFDSITR  259
             EFI++ L+EE  K+ V+VV+TSD +++ R ++ +VAT IAE+FR++GK VVLL DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  FANAKREMSLSLGEPPVAKGYPPSVFVEIPILLERSGFNGNGGSVTGFYTVLVEGDDFTE  319
            +A A RE++L+ GE +V+  YPP+VF  +P LLER+G  G+ GS+T+FYTVLVEGDD  E
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDDMNE  315

Query  320  PVADNIKAVLDGHIILDRDLFDRGIYPSINVLSSTSRSIHRIMSSEKQKLILKARNLLSI  379
            P+AD+++++LDGHI+L R L +RG YP+I+VL++ SR +  + S E ++L    R  L++
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YKDYEDLIRTGIYLKGSNKDVDFAISKYPKIIDFISQGINETFDFENLEDEIKEILS  436
            Y++ E LIR G Y +G + D D AI  YP I  F+ Q+ +E  + E L + + +IL+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

420) Hprae_0546 in NC_017455


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  299 bits (1122),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 196/412 (48%), Positives = 286/412 (70%), Gaps = 2/412 (0%)

Query  21   NFGHINRVIGLVIESIGPQASIGELCLIKGENGDIKAEVVGFDDNKVLMMPIGEMEGIRP  80
              G+I+ V + ++++  P   +GELC IK   G+  AEVVG++++K L+ P+    G++ 
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIK--PGEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  81   GARVIATDeklkvkvgkellgkIIDGSGNIISGEDPSGLNEVPVNNKPPDPLTRARIKAP  140
            G +V+A   + +V VG  LLG++IDG G  + G + + +     +  PP ++ R  I  P
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  LSLGVRCIDGFLTCGKGQRMGIFAGSGVGKSTLLGMAARNTNADINVIGLVGERGREVRD  200
            L  G+R ID+  TCG GQR+GIF+++GVGKSTLL+M     +AD NV+ L+GERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  FIEKDLGAEGLERSIVVVATSDQPALLRVKAANIATAIAEYFRDQGEDVLLMMDSVTRVA  260
            FI+  L+ E   R ++VVATSD+PAL RV+A  +AT+IAE+FRD+G  V+L+ DS+TR A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  MALREVGLAIGEPPATRGYPPSVFAELPKLLERTGTNDVGSITALYTVLVEGDDFNEPVS  320
             A RE++LA GE + +  YPP+VF+ LP+LLERTG  + GSITA+YTVLVEGDD NEP++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  321  DTVRGILDGHISLSRELAESSHYPAVDVLSSVSRIMEDIVSKEHSQAAAKLQKIIATYNQ  380
            D VR++LDGHI LSR LAE +HYPA+DVL+++SR+   + S EH Q AA L++ +A Y++
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  381  SEDLINIGAYEKGSNPEVDRAIAKIDEINNFLTQGINEEANYESTVQQLIQI  432
             E LI IG Y++G + + D+AI    +I  FL Q+ +E    E  +++L QI
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

421) Bamb_5851 in NC_008392


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  299 bits (1121),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 201/436 (47%), Positives = 304/436 (70%), Gaps = 12/436 (2%)

Query  31   ADAMERELRARAQPAA--C--GKVQEVIGTLVRVSGLDATLGELCELRSPEGALLQRAEV  86
             + M+R LR +  P+   C  G++Q+V +TL+     +  +GELC +++ E    + AEV
Sbjct  3    NELMQR-LRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEV  57

Query  87   VGFSRDVALLSPFGRLGSVSRATRVVGLRRPLSLRIGPRLLGRVIDSLGEPIDGKG-PLE  145
            VG++   ALLSPF   +++  + +V++LRR   + +G  LLGRVID++G P+DG+  P  
Sbjct  58   VGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV  117

Query  146  CDEWQPVIADPPDPMSRPVVDTPMPTGVRVVDGMMTLAEGQRMGIFAPAGVGKSTLMGMF  205
            C  W+   A PP +M R  +  P+ TG+R +D++ T +EGQR+GIF+++GVGKSTL++M+
Sbjct  118  C--WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAML  175

Query  206  ARGARCDVNVIALIGERGREVREFCEHILGPDGMARSVVVCATSDRSSIERakaayaata  265
              ++  D NV+ LIGERGREVREF +  L+ +   R V+V ATSDR+++ER +A + AT+
Sbjct  176  CNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATT  235

Query  266  vaEYFRDRGMRVLLMMDSLTRFARAQREIGLAMGEPPTRRGFPPSIFAELPRLLERAGRS  325
            +AE+FRD G RV+L+ DSLTR+ARA REI+LA GE +    +PP++F+ LPRLLER+G +
Sbjct  236  IAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG  295

Query  326  ALGSITALYTVLAEDETGGDPIAEEVRGILDGHMILSREIAAQNRYPAIDVLGSLSRVMT  385
              GSITA+YTVL E++   +P+A+EVR++LDGH++LSR +A + +YPAIDVL++LSRV  
Sbjct  296  EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFP  355

Query  386  QVVSREHVAAAGHVRRLMAKHKEVELLLQVGEYQSGTDALADEAIAKIDAIRDFLGQPTD  445
             V S+EH   A+ +RR +A  +EVELL+++GEYQ G D+ +D AI     I  FL Q+ D
Sbjct  356  VVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD  415

Query  446  LLVDPDDTIAALGEIV  461
             + +P+  I  L +I+
Sbjct  416  EVCGPELLIEKLHQIL  431

422) BamMC406_5634 in NC_010557


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  299 bits (1122),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 201/436 (47%), Positives = 304/436 (70%), Gaps = 12/436 (2%)

Query  31   ADAMERELRARAQPAA--C--GKVQEVIGTLVRVSGLDATLGELCELRSPEGALLQRAEV  86
             + M+R LR +  P+   C  G++Q+V +TL+     +  +GELC +++ E    + AEV
Sbjct  3    NELMQR-LRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEV  57

Query  87   VGFSRDVALLSPFGRLGSVSRATRVVGLRRPLSLRIGPRLLGRVIDSLGEPIDGKG-PLE  145
            VG++   ALLSPF   +++  + +V++LRR   + +G  LLGRVID++G P+DG+  P  
Sbjct  58   VGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV  117

Query  146  CDEWQPVIADPPDPMSRPVVDTPMPTGVRVVDGMMTLAEGQRMGIFAPAGVGKSTLMGMF  205
            C  W+   A PP +M R  +  P+ TG+R +D++ T +EGQR+GIF+++GVGKSTL++M+
Sbjct  118  C--WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAML  175

Query  206  ARGARCDVNVIALIGERGREVREFCEHILGPDGMARSVVVCATSDRSSIERakaayaata  265
              ++  D NV+ LIGERGREVREF +  L+ +   R V+V ATSDR+++ER +A + AT+
Sbjct  176  CNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATT  235

Query  266  vaEYFRDRGMRVLLMMDSLTRFARAQREIGLAMGEPPTRRGFPPSIFAELPRLLERAGRS  325
            +AE+FRD G RV+L+ DSLTR+ARA REI+LA GE +    +PP++F+ LPRLLER+G +
Sbjct  236  IAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG  295

Query  326  ALGSITALYTVLAEDESGGDPIAEEVRGILDGHMILSREIAAQNRYPAIDVLGSLSRVMT  385
              GSITA+YTVL E++   +P+A+EVR++LDGH++LSR +A + +YPAIDVL++LSRV  
Sbjct  296  EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFP  355

Query  386  QVVSREHVAAAGHVRRLMAKHKEVELLLQVGEYQSGTDALADEAIAKIDAIRDFLGQPTD  445
             V S+EH   A+ +RR +A  +EVELL+++GEYQ G D+ +D AI     I  FL Q+ D
Sbjct  356  VVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD  415

Query  446  LLVDPDDTIAALGEIV  461
             + +P+  I  L +I+
Sbjct  416  EVCGPELLIEKLHQIL  431

423) Clole_2457 in NC_015275


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  299 bits (1121),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 195/420 (47%), Positives = 298/420 (71%), Gaps = 11/420 (2%)

Query  16   WTYKGRVTRVVGMSIETLGPIANIGDICYIQPRGKKELVTAEVVGFKDEYLLLMPLGNLE  75
            W   GR+  V +  +++  P   +G++C I+P    EL  AEVVG+++   LL P+ +  
Sbjct  22   W---GRIQDVSATLLNAWLPGVFMGELCCIKP--GEEL--AEVVGINGSKALLSPFTSTA  74

Query  76   GIGPGCEVLAYGDKLSVKVDESLLGKVVDWRAKPINGDELH--CRYQVPIDNTAPNPLTR  133
            G+  G +V+A   +  V V+E+LLG+V+D  ++P++G EL   C+ +   D  +P ++ R
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD--YDAMPPPAMVR  132

Query  134  NRITIPLQLGVRAIDGMLTVGKGQRIGIFAGSGVGKSTLMGMIARNALSDINIIALIGER  193
            + IT PL  G+RAID++ T G GQR+GIF+++GVGKSTL++M+   + +D N++ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  194  GREVREFIENDLQAEGLKRSIVVVATSDQPALMRLKAAMTATALAEHFRAQGKDVLLMMD  253
            GREVREFI+  L  E  KR ++VVATSD+PAL R++A   AT++AE FR +GK V+L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  254  SLTRFSMAQREIGLAIGEPPVSRGYTPSVFAQMPKLLERAGNSDKGSITGMYTVLVDGDD  313
            SLTR++ A REI+LA GE +VS  Y P+VF+ +P+LLER+G ++KGSIT+ YTVLV+GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  314  FNEPITDTARGILDGHIVLSRKLANKGHYPAIDVLASISRVMSNIVSDQHKTYAREIKKH  373
             NEP++D  R++LDGHIVLSR+LA++GHYPAIDVLA++SRV + + S++H+  A  ++++
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  374  MAVYKEAEDLINVGAYNKGSSEEIDAAIDKMKFINEFLCQSVGEKVEFENTLHHMQEIIS  433
            +A+Y+E E LI +G Y++G   + D AID    I  FL QS +E    E  ++ +++I++
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

424) fliI in NC_015391


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  299 bits (1122),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 188/417 (46%), Positives = 290/417 (70%), Gaps = 4/417 (0%)

Query  19   YLKMGKVSQVTGLIIKVEGLDAFVGEVCEIHIKSSGRIALSEVVGFVDEMVLLMPLDELE  78
            Y + G++ +V++ +++    + F+GE+C   IK++    L+EVVG+ +   LL P+    
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELC--CIKPGE--ELAEVVGINGSKALLSPFTSTA  74

Query  79   GIGPGCLVKPTGKTLKVEISEKLLGNTLDGLGRPMDTSLEVDGVFYDVNRSSPNPFKRKK  138
            G+  G  V +  +  +V ++E LLG  +DG+GRP+D     +    D +  +P +  R+ 
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQP  134

Query  139  IKDVMPTGIKAIDGTLTVGEGQRVGIFAGSGVGKSTLLGMMARYIEADVIVIGLIGERGR  198
            I + + TGI+AID+  T GEGQRVGIF+++GVGKSTLL+M+    +AD  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  199  EVLEFIEKDLGEEGYRKSVVVCATSDMPPLVRLKGASVATTIAEYFRDQGKKVVLMMDSV  258
            EV EFI+  L+EE  ++ V+V ATSD P+L R+++  VATTIAE+FRD+GK+VVL+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  259  TRVAMAQREIGLATGEPPTTKGYTPSVFTTLPKLLERSGMSENGSITAFYTVLVEGDDMN  318
            TR A A REI+LA+GE + +  Y P+VF++LP+LLER+GM+E+GSITAFYTVLVEGDDMN
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  319  EPIADSVRGILDGHIVLSRKIASENHYPAIDIQNSISRLMKDITTDKHSTTAGKLKENMS  378
            EP+AD VR++LDGHIVLSR++A   HYPAID+  ++SR+   +T++ H   A+ L+  ++
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  379  VYSDSKDLIDVGAYRKGSNPSVDRAVQLNTPIKDFLKQRVDERYAFDEVVDQLKALF  435
            +Y +   LI +G Y++G +   D+A++    I  FL+Q  DE  + + ++++L  ++
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

425) hrcN in NC_016830


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  299 bits (1119),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 208/396 (53%), Positives = 286/396 (73%), Gaps = 13/396 (3%)

Query  36   SGILLQCRLPGAQIGDLCRVERDAREPLLAEIVGFDQHDALLSALGGLEGVRVGAAVEPL  95
            S+ LL+ +LPG  +G+LC +  +     LAE+VG++   ALLS++ +  G++ G  V +L
Sbjct  29   SATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMAL  85

Query  96   GMPHRVCVGPQLLGQVLDGFGRPLVDGGAGAFAGAHVPNAS--QVIGEAPAPTARPRIQR  153
               H+V VG  LLG+V+DGFGRPL         G ++P+    +  + +P++  R  I +
Sbjct  86   RRRHQVPVGEALLGRVIDGFGRPL--------DGRELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  154  PLMTGVRAIDGPLTLGEGQRVGLFAGAGCGKTTLLAEIARNVDCDVIVFGLIGERGRELR  213
            PLMTG+RAID+  T GEGQRVG+F+++G GK+TLLA +    D D  V+ LIGERGRE+R
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  214  EFLDHELDDELRARAVLVCATSDRSSMEraraaftatalaEGFRARGLRVLLLIDSLTRF  273
            EF+D  L +E R R V+V ATSDR+++ER RA F AT++AE FR  G RV+LL DSLTR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  274  ARAQREIGLAAGEPLGRGGLPPSVYSLLPRLVERAGLTNEGAITAFYTVLIEQDSMNDPV  333
            ARA REI+LAAGE    G  PP+V+S LPRL+ER+G+ + G+ITAFYTVL+E D MN+P+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  334  ADEVRSLLDGHIVLSRKLAERGHYPAIDVLASLSRTLANVAEAEHLRAGINLRRLLSAYE  393
            ADEVRSLLDGHIVLSR+LAERGHYPAIDVLA+LSR ++ V+  EH + +  LRR L+ Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  394  QIELMLRLGEYQAGADPLTDLAVESRGALDAFLRQD  429
            ++EL++R+GEYQ G D  TD A+++   + +FLRQ 
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

426) RO1_09360 in NC_021012


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  299 bits (1119),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 197/405 (49%), Positives = 285/405 (71%), Gaps = 9/405 (2%)

Query  16   FNRLGKVTKIVGLTIESVGPNAKLNDLCRIIIDREQNISTMAEVVGFRDKHLLLMPFESV  75
            + R G++  + +  +++  P   + +LC I  + E     +AEVVG+ +   LL PF S 
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGINGSKALLSPFTST  73

Query  76   EGIGVGCIVENTGHPLTVKVGEELLGHTLDGIGRPTDVEELLLPY--DYPVEALPPDPMA  133
             G+  G  V    +   V VGE LLG+ +DG+GRP D  EL      DY  +A+PP +M 
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMV  131

Query  134  RKIIDEVLPLGVKAVDGLITVGKGQRIGIFAGSGVGKSTLLGMFARNTKADINVIALIge  193
            R+ I + L  G++A+D++ T G GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  194  rgrevrefverDLGEEGMKRSVVIVATSDKPALIRNKAAKTATAIAEYFRDQGKDVLLMM  253
            RGREVREF++  L+EE  KR V++VATSD+PAL R +A   AT+IAE+FRD+GK V+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  254  DSLTRFSMAQREIGLASGEPPVTRGYPPSVYSEMPKLLERAGTSDKGSITGLYTVLVDGD  313
            DSLTR++ A REI+LA+GE +V+  YPP+V+S +P+LLER+G ++KGSIT++YTVLV+GD
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  314  DMNEPITDTARSILDGHIMLSRKLGQKNHYPAIDVLQSISRVMSSIATSEHKELAGKLRN  373
            DMNEP++D  RS+LDGHI+LSR+L+++ HYPAIDVL ++SRV + +++ EH++LA+ LR 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  374  VMATYNEAEDLINIGAYKNGTNREIDYAIQKIQAVNEFLMQKTDE  418
             +A Y+E E LI IG Y+ G + + D AI+    +  FL Q  DE
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

427) Glov_3301 in NC_010814


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  299 bits (1119),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 188/416 (46%), Positives = 293/416 (71%), Gaps = 8/416 (1%)

Query  17   HGKVTQVVGLVIEGYCPDTSVGAICEIRPKDGVPIPAEVVGFRDNKTLLMPLGDLRGVGL  76
             G++ +V + ++++  P+  +G +C I+P + +   AEVVG+ ++K+LL P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  77   DSLIAVRRDKATLRVGPGLLGRVIDGLGNPIDDKGPLHLDEE-YPIYAA-PVNPMKRPPI  134
            +  +   R +  + VG +LLGRVIDG+G P+D++   +L E     Y A P  +M R PI
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR---ELPEVCWKDYDAMPPPAMVRQPI  135

Query  135  RRPLDLGIRSINGLLTCGQGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGRE  194
             +PL  GIR+I+++ TCG+GQRVGI +++GVGKSTLL+M+    +AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  195  LREFVEKDLQEQGLHKSVVVVATSDQPPLVRMRGAYLATTIAEYFKDQGKKVLMMMDSAT  254
            +REF++  L E+   + V+VVATSD+P+L R+R+ ++ATTIAE+F+D+GK+V+++ DS T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  255  RFAMAMREVGLAIGEPPTTKGYTPSVFAALPKLLERTGNFPEGSITGLYTVLVEGDDFNE  314
            R+A A RE++LA GE + +  Y P+VF+ALP+LLERTG    GSIT++YTVLVEGDD NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  315  PISDAMRSILDGHIVLSRDLAARNIYPPIDIMASASRVMADVADERHRKLAGQFKETLAT  374
            P++D +RS+LDGHIVLSR LA R  YP+ID++A+ SRV + V+ + HR+LA+ ++  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  375  YRQSEDLINIGAYKAGSNPGIDQAIRKIDAMTAYQKQAVADPATLADSVDGLQRIF  430
            Y++ E LI IG Y+ G + + D+AI     + ++ +Q+  +       ++ L++I+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

428) Hipma_1198 in NC_015318


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  298 bits (1115),  Expect = 7e-82, Method: Compositional matrix adjust.
 Identities = 194/399 (49%), Positives = 277/399 (70%), Gaps = 4/399 (1%)

Query  20   YGRIKKVAGITIKSTGPKNVKIGDVCKIETDEGWIDSEVVGFDEDGVVLMPLGVLDGVKS  79
             GRI+ V++  +++  P  V +G++C I  +E    +EVVG++    +L P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLP-GVFMGELCCIKPGEE--LAEVVGINGSKALLSPFTSTAGLHC  78

Query  80   LSLVKSEGRGLSVPVSERLLGRVVNALGRPIDGKGpipveeyypvypkpvppleRQIIKE  139
               V +  R   VPV+E LLGRV++++GRP+DG+    V         P + + RQ I +
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMV-RQPITQ  137

Query  140  PLSLGVKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNSSADVNVIALIGERGREVR  199
            PL  G++AID++ T G GQRVGIF+++GVGKSTLL+M+   + AD NV+ LIGERGREVR
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  200  EFIERDLKEEGLKRSVVVVATSDEASLLRREGAFVATSIAEFFKDRGANVMLMMDSATRF  259
            EFI+  L EE  KR V+VVATSD ++L R  + FVAT+IAEFF+D G  V+L+ DS TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  260  AMAQREIGLAVGEPPTTKGYTPSVFTLLPRLMERAGNFNKGSITAIYTVLVDGDDLMEPI  319
            A A REI+LA GE + +  Y P+VF+ LPRL+ER+G  +KGSITA+YTVLV+GDD+ EP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  320  ADASRSILDGHIVLSRKIAERGRYPAVDVLRSISRLMSSITTDEHKELALKIRKVLSVYA  379
            AD  RS+LDGHIVLSR++AERG+YPA+DVL ++SR+ + +T++EH++LA  +R+ L++Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  380  DAEDLINIGAYVKGSNKDIDEAIKYIDKVEGFLAQKIEE  418
            + E LI IG Y +G + D D AI     +  FL Q  +E
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

429) fliI in NC_015578


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  297 bits (1112),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 182/400 (46%), Positives = 280/400 (70%), Gaps = 7/400 (1%)

Query  22   GHVIKVQGILIESLGPSAVIGEVCRIEVPRGKGVIQAEVVGLSNGIVQLMAYEDIEGIEI  81
            G++  V + L+++  P+  +GE+C I      G   AEVVG++ +   L ++    G++ 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK----PGEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  82   GNRvvasgaalgvavsNKLLGRVLDAMGRPSDGKGEIDSPL-QYPAIASPPPPLSRRRIK  140
            G++V+A      V+V++ LLGRV+D+ GRP DG+   +    +Y A+  PPP++ R+ I 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPIT  136

Query  141  ERIATGVRAIDGMLAAGRGQRLGIFAGSGVGKSTLLGMIARNTNADVNVVALIGERGREV  200
            + + TG+RAID++ + G GQR+GIF+++GVGKSTLL+M+    +AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  201  NDFIENDLGPEGLARSVIIVTPSNSPPLARLRGAYTATAVAEYFRDQGLDVMLLFDSVTR  260
             +FI+  L+ E   R VI+V+ S+ P+L R+R+ + AT++AE+FRD+G  V+LL DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  261  FARAQREIGLAIGEPPATRGYTPSMFDSMPKLLERSGTSDRGSITGFYTILVDGDDMDEP  320
            +ARA REI+LA GE + +  Y P++F ++P+LLER+G +++GSIT+FYT+LV+GDDM+EP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  321  VADTVRGILDGHIILSRDLAQRYHYPAIDVLTSISRLAPAVSGPVTNKAVGYIRRLMADY  380
            +AD VR++LDGHI+LSR LA+R HYPAIDVL+++SR+ P V++    +  + +RR +A Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  381  AAAEDLINVGAYRTGSNPAIDQAIAKREAIENFLVQNVDE  420
               E LI +G Y+ G +   D+AI     I  FL Q+ DE
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

430) RHOM_06955 in NC_015977


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  297 bits (1114),  Expect = 7e-82, Method: Compositional matrix adjust.
 Identities = 193/405 (48%), Positives = 287/405 (71%), Gaps = 9/405 (2%)

Query  17   FNRLGKVVKIVGLTIESVGPDAKLNDLCRIVIDREKDHAVMAEVVGFRDKRLLLMPFENV  76
            + R G++  + +  +++  P+  + +LC I     K    +AEVVG+ + + LL PF + 
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELCCI-----KPGEELAEVVGINGSKALLSPFTST  73

Query  77   EGIGVGCIVENTghplgvlvgdgvlghtldgIGRPTDGGVIEGGC--EYPVEADPPDPMS  134
             G+  G  V    +   V VG+++LG+ +DG+GRP DG  +   C  +Y  +A PP +M 
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMV  131

Query  135  RKIISEVLPLGVKAVDGLITVGKGQRIGIFAGSGVGKSTLLGMFARNTKADINVIALIGE  194
            R+ I++ L  G++A+D++ T G GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  195  RGREVREFIERDLGEEGMKRSVVVVATSDKPALIRNKAAKTATAIAEYFRDQGKDVLLMM  254
            RGREVREFI+  L+EE  KR V+VVATSD+PAL R +A   AT+IAE+FRD+GK V+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  255  DSLTRFSMAQREIGLASGEPPVTRGYPPSVYSEMPKLLERAGTSDKGSITGLYTVLVDGD  314
            DSLTR++ A REI+LA+GE +V+  YPP+V+S +P+LLER+G ++KGSIT++YTVLV+GD
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  315  DFNEPITDTARSILDGHIVLSRKLGHKNHYPAIDILQSISRVMSAIATSEHKELAGRLKN  374
            D NEP++D  RS+LDGHIVLSR+L+++ HYPAID+L ++SRV + +++ EH++LA+ L+ 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  375  VLATYNEAEDLINIGAYKSGSNREIDYAVQKINAVNQFLCQRTDE  419
             LA Y+E E LI IG Y+ G + + D A++    +  FL Q  DE
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

431) Pmob_1376 in NC_010003


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  297 bits (1114),  Expect = 8e-82, Method: Compositional matrix adjust.
 Identities = 182/416 (44%), Positives = 287/416 (69%), Gaps = 13/416 (3%)

Query  27   GKISRIVGVTIESIGPSVALGDLCRIKLKDGSKIFAETVGFSDNKVLLMPLEDVSGIYVG  86
            G+I  + +  +++  P+V +G+LC IK  +    +AE VG++++K LL P+   +G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  87   APVERVDSKINVKISSDLLGHVLDGLGRSMDGSKV-----KSYESKSIYRSAPNPLLRNR  141
              V  +  + +V ++  LLG+V+DG+GR++DG  +     K Y++      +P +++R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM-----PPPAMVRQP  134

Query  142  IKEPLSVGVRAIDAFLTLGKGQRIGIMAGSGVGKSTLLGMIARNTEADINVIGLIGERGR  201
            I +PL  G+RAID+  T G GQR+GI +++GVGKSTLL+M+    +AD NV+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  202  EVKDFIEKDLGEEGLKKSVLIVSTSDSPALLRVKALYTATTIAEYFRDLGYNVLMMVDSI  261
            EV++FI+  L+EE  K+ V++V+TSD PAL RV+AL+ ATTIAE+FRD G  V+++ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  262  TRWAMAQREIGLSIGEPPTTRGYTPSVFANMPKILERAGNSQKGSMTAIYTVLVEADDMN  321
            TR A A REI+L+ GE + +  Y P+VF+ +P++LER+G ++KGS+TA+YTVLVE+DDMN
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  322  DPIGDAVRSIVDGHIVLSRSLADSSHYPPIDILSSVSRLMKEVVDEKHLKAAMFIRDIYA  381
            +P++D VRS++DGHIVLSR LA+ +HYP+ID+L+++SR+   V  + H + A ++R   A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  382  SYMNSKDLIEVGAYKKGSNKKVDIALEEIENINNFLTQRIEEKAPFEQTLKKLVEI  437
             Y +   LI +G Y++G +   D A++   +I  FL Q  +E    E  + KL +I
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

432) fliI in NC_011229


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  296 bits (1110),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 171/414 (42%), Positives = 288/414 (70%), Gaps = 4/414 (0%)

Query  23   GRVKKIKGLLLESLGPKCGIGDLCLIEQSCGKKIYAEVLGFNGSCVSLMAYEGFDGVEVG  82
            GR++ + + LL++  P   +G+LC I  +      AEV+G+NGS   L ++ +  G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPG---EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  83   DKVYSLNKKPQINLSDELLGRVIDSLGRPIDNKGPFFGNNYKELSFSSINPLDRGVFTEQ  142
            ++V +L ++ Q+ +++ LLGRVID++GRP+D +  +     K+    +  ++ R  +T+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  143  IVTGVRVLDGFLPVARGQRVGIFSGAGVGKSTLLGMIAKNSKADVNVIAFIGERGRELNE  202
            ++TG+R +D+    + GQRVGIFS++GVGKSTLL+M+ + + AD NV+ +IGERGRE+ E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  203  FIKYELGNGCFNRSVLIVSTSDESPISRYKGAYTATLVAEYFRDCGMDVMLLFDSITRFA  262
            FI + L++   +R V++V+TSD +++ R ++ + AT +AE+FRD G  V+LL DS+TR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  263  NAKREISLSMGEPPATKGYPPSVFVEIPILLERSGLNAKGSITGFYTVLVEGDDFSEPIS  322
             A REI+L+ GE + +  YPP+VF  +P LLER+G+  KGSIT+FYTVLVEGDD +EP++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  323  DNMKAVLDGHIILDRDLSDKGIYPSVNILNSTSRSLHRIVNFEKQKLISKIRNLLSIYKS  382
            D+++++LDGHI+L R L+++G YP++++L + SR +  + + E ++L + +R  L++Y+ 
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  383  YEDLIKTGIYVKGSNKEVDLAIAKYPKIIDFLSQGMQEECDFENLDNEMREILA  436
             E LI+ G Y +G + + D AI  YP I  FL Q+ +E C+ E L + +++IL+
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

433) HP15_2323 in NC_017506


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  296 bits (1108),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 196/397 (50%), Positives = 277/397 (70%), Gaps = 9/397 (2%)

Query  45   VGDRCVIFGQNTGNVEAEVVGFEDDRVYLMPLTAIEGLKPGARVVPLSAASRVPVGPQLL  104
            +G+ C I   + G+  AEVVG+++ +  L P+T+  GL  G +V++L    +VPVG  LL
Sbjct  42   MGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  105  GRVVDGSGEPLDGKGPLQAEARVALTGDIINPLNRAPVRQSMDVGIRAINALMTVGQGQR  164
            GRV+DG G PLDG+  L    +    +    ++ R P+ Q++  GIRAI+++ T G+GQR
Sbjct  99   GRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  165  LGLFAGSGVGKSMLLGMMTRFTDADITVVGLIGERGREVKEFIEDILGEEGLSRSVVVAA  224
            +G+F+++GVGKS LL+M+    DAD  V+ LIGERGREV+EFI+  L+EE   R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  225  PADDSPLMRLRAAMLTTRIAEYYRDQGKRVLLLMDSLTRYAQAQREIALAVGEPPATKGY  284
             +D ++L R+RA  ++T IAE++RD+GKRV+LL DSLTRYA+A REIALA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  285  PPSVFAKLPQLVERTGNGRPGGGSITAFYTVLTEGDDQQDPIADAARAILDGHIVLSRRL  344
            PP+VF+ LP+L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRL
Sbjct  278  PPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  345  AEEGHYPAIDVEASISRVMPQVTETEHFSRAQRFKQVYSRYQQARDLISVGAYVKGSDPE  404
            AE GHYPAIDV A++SRV P VT  EH   A  +++  + YQ+   LI +G Y +G D +
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  405  TDFAITHIGNMRQFLQQGLNE-SAP--LKESVDQLLA  438
            TD AI    ++  FL+Q+ +E  +P  L E ++Q+L+
Sbjct  396  TDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

434) fliI in NC_008740


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  296 bits (1109),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 189/381 (50%), Positives = 270/381 (71%), Gaps = 6/381 (1%)

Query  61   AEVVGFEEDKVYLMPLTAIEGLKPGARVIPLASASRVPVGPQMLGRVVNGAGDPLDGKGP  120
            AEVVG++  K  L P+T+  GL  G +V++L    +VPVG  +LGRV++G G PLDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  121  LQAEARVQLTGDIINPLNRAPVRQSMDVGIRAINALLTVGQGQRLGLFAGSGVGKSMLLG  180
            L    + +  +    ++ R P+ Q++  GIRAI+++ T G+GQR+G+F+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  181  MMTRFTDADITVVGLIGERGREVKEFIEDILGDEGLARSVVVAAPADDSPLMRLRAAMLT  240
            M+    DAD  V+ LIGERGREV+EFI+  L++E   R V+V A +D ++L R+RA  ++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  241  TRIAEYYRDQGKRVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPQLVERTG  300
            T IAE++RD+GKRV+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LP+L+ERTG
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  301  NGRPGGGSITAFYTVLTEGDDQQDPIADAARAILDGHIVLSRRLAEEGHYPAIDVEASIS  360
             G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAIDV A++S
Sbjct  294  MG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  361  RVMPQVTDSEHFSRAQRFKQVYSRYQQARDLISVGAYVKGSDPETDFAIQHIGNMSQFLQ  420
            RV P VT  EH   A  +++  + YQ+   LI +G Y +G D +TD AI+   ++  FL+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  421  QGLNE-SAP--LTEAIEQLMA  438
            Q+ +E  +P  L E ++Q+++
Sbjct  412  QSKDEVCGPELLIEKLHQILT  432

435) fliI in NC_017067


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  296 bits (1109),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 189/381 (50%), Positives = 270/381 (71%), Gaps = 6/381 (1%)

Query  61   AEVVGFEEDKVYLMPLTAIEGLKPGARVIPLASASRVPVGPQMLGRVVNGAGDPLDGKGP  120
            AEVVG++  K  L P+T+  GL  G +V++L    +VPVG  +LGRV++G G PLDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  121  LQAEARVQLTGDIINPLNRAPVRQSMDVGIRAINALLTVGQGQRLGLFAGSGVGKSMLLG  180
            L    + +  +    ++ R P+ Q++  GIRAI+++ T G+GQR+G+F+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  181  MMTRFTDADITVVGLIGERGREVKEFIEDILGDEGLARSVVVAAPADDSPLMRLRAAMLT  240
            M+    DAD  V+ LIGERGREV+EFI+  L++E   R V+V A +D ++L R+RA  ++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  241  TRIAEYYRDQGKRVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPQLVERTG  300
            T IAE++RD+GKRV+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LP+L+ERTG
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  301  NGRPGGGSITAFYTVLTEGDDQQDPIADAARAILDGHIVLSRRLAEEGHYPAIDVEASIS  360
             G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAIDV A++S
Sbjct  294  MG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  361  RVMPQVTDSEHFSRAQRFKQVYSRYQQARDLISVGAYVKGSDPETDFAIQHIGNMSQFLQ  420
            RV P VT  EH   A  +++  + YQ+   LI +G Y +G D +TD AI+   ++  FL+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  421  QGLNE-SAP--LTEAIEQLMA  438
            Q+ +E  +P  L E ++Q+++
Sbjct  412  QSKDEVCGPELLIEKLHQILT  432

436) Q7A_2368 in NC_017857


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  296 bits (1109),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 262/364 (72%), Gaps = 3/364 (0%)

Query  71   AEVVGFHDETLYLMPTGNIRGLVPNARVRPIRSDSQVPVGNALLGRIVDGAGKPLDGRGP  130
            AEVVG+++    L P  +  GL    +V ++R   QVPVG+ALLGR++DG G+PLDGR  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  131  LNVNDKVPLHGKTVNPLSRAPVRQHLDVGVRAINTLMTVGRGQRMGLFAGSGVGKSVLLG  190
             +V  K   ++    ++ R P+ Q L  G+RAI+++ T G GQR+G+F+++GVGKS LL+
Sbjct  115  PEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  191  MMTRFTEADVIVVGLIGERGREVKEFIEDILGEEGLKRAVVVASPADHSPLMRLHGAMLA  250
            M+    +AD  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D+++L R+++  +A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  251  TSIAEYFRDQGKQVLLLMDSLTRFAQAQREIALAVGEPPATKGYPPSVFSLLPQLVERAG  310
            T+IAE+FRD+GK+V+LL DSLTR+A+A REIALA GE + +  YPP+VFS LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  311  SGEVGGGAITAIYTVLTEGDDQQDPVADAARAILDGHIVLSRQLAEAGHYPAIDVEASIS  370
             GE   G+ITA+YTVL EGDD ++P+AD  R++LDGHIVLSR+LAE GHYPAIDV A++S
Sbjct  294  MGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  371  RVMPQVVDAKQLQLAQQFKRIYSTYRQNQDLITIGAYQAGSDQQIDEAINRFPALSAMLK  430
            RV P V    + QLA  ++R  + Y++ + LI IG YQ G D + D AI+ +P + + L+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  431  QDMH  434
            Q  +
Sbjct  412  QSKD  415

437) Marme_3235 in NC_015276


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  296 bits (1109),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 193/401 (49%), Positives = 276/401 (69%), Gaps = 10/401 (2%)

Query  42   VALGDRCNVQVGASKWVESEVVGFNGKLTYLMPTEAIEGIAPGARVVPLDDDSRMPVGDH  101
            V +G+ C ++ G      +EVVG+NG  + L P  +  G+  G +V++L    ++PVG+ 
Sbjct  40   VFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEA  96

Query  102  LLGRVINGLGRPLDGRG--PITSDESISLQGEIINPLQRKPISDTLDVGIKTINSLLTVG  159
            LLGRVI+G+GRPLDGR    +   +  ++      ++ R+PI++ L  GI++I+S+ T G
Sbjct  97   LLGRVIDGFGRPLDGRELPEVCWKDYDAMPP---PAMVRQPITQPLMTGIRAIDSVATCG  153

Query  160  KGQRLGLFAGSGVGKSMLLGMMTRFTEADITIVGLIGERGREVKEFIEQILGEEGLAKSV  219
             GQR+G+F+++GVGKS LL+M+    +AD  ++ LIGERGREV+EFI+  L+EE   + V
Sbjct  154  EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCV  213

Query  220  VIASPADDSALMRLRAAMLTTRIAEYFRDQGRNVLLLMDSLTRYAQAQREIALSVGEPPA  279
            ++ + +D +AL R+RA  ++T IAE+FRD+G+ V+LL DSLTRYA+A REIAL+ GE + 
Sbjct  214  IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAV  273

Query  280  TKGYPPSVFSKLPQLVERAGNGKEGGGSITAFYTVLTEGDDQQDPIADASRAILDGHIVL  339
            +  YPP+VFS LP+L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVL
Sbjct  274  SGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  340  SRRLAEEGHYPAIDIEASISRAMPHIVSSEHLQGAMRVKQLYSKFQQNRDLISVGAYSKG  399
            SRRLAE GHYPAID+ A++SR  P + S EH Q A  +++  + +Q+   LI +G Y +G
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRG  391

Query  400  SDPDLDQAIMLMPDINDFLRQSLSESFNLEQSLEKLVQALT  440
             D D D+AI   PDI  FLRQS  E    E  +EKL Q LT
Sbjct  392  VDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

438) Tlet_1901 in NC_009828


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  296 bits (1108),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 191/396 (49%), Positives = 274/396 (70%), Gaps = 3/396 (0%)

Query  25   GRVNRIIGLTVESTGPDAFLGELCKLNLDGKKPLCEVVGFRDGKVLLMPLEDLSGAKHGT  84
            GR++ + +  +++  P+ F+GELC   +     L EVVG+ ++K LL P+   +G   G 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELC--CIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQ  80

Query  85   FVYKTNRRLDVGVSEDMKGRIVDGLGRPIDGKPLIAKHRYPLINSAPHPLKRSRITAPLP  144
             V    RR +V V+E + GR++DG+GRP+DG+ L    +      +P ++ R  IT PL 
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLM  140

Query  145  VGVRAIDGFITIGKGQRIGIFAGSGVGKSTLLGMIARNTVADVNVIALIGERGREVREFI  204
             G+RAID+  T G GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGERGREVREFI
Sbjct  141  TGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFI  200

Query  205  EKDLAKGIEK-SIVVVSTSDQPALMRSKALYTATSIAEYFRDLGYDVLLMVDSLTRWAMA  263
            +  L+    K  ++VV+TSD+PAL R +AL+ AT+IAE+FRD G  V+L+ DSLTR A A
Sbjct  201  DFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARA  260

Query  264  QREIGLAIGEPPTARGYPPSVFAGIPGILERAGNSDKGSITAIYTVLVEADDFNEPISDT  323
             REI+LA GE + +  YPP+VF+++P +LER+G ++KGSITA+YTVLVE+DD NEP++D 
Sbjct  261  AREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADE  320

Query  324  VRSVVDGHIMLSRRLSELNHYPAIDVLASVSRLMVDIVGHDHLEASRNLRNLMATYYEAK  383
            VRS++DGHI+LSRRL+E  HYPAIDVLA++SR+   + +H+H + +  LR  +A Y E  
Sbjct  321  VRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVE  380

Query  384  DLIDVGAYKPGSNPQIDRAIKMIDPINSFLKQRIDE  419
             LI +G Y+ G + + D+AI     I +FL+Q  DE
Sbjct  381  LLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

439) fliI in NC_017717


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  296 bits (1108),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 180/417 (44%), Positives = 294/417 (71%), Gaps = 9/417 (2%)

Query  22   GRVQKIKGLLVESLGPQCAVGDLCLIDQRNNKKVCAEVLGFNGPYVSLMTYEGFSGIEVG  81
            GR+Q + + L+++  P   +G+LC I   ++    AEV+G+NG+   L  + + +G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   NKVYSLNKGLEINLSDELLGRVIDSLGRPIDNKGSFLKNRYKELTFEKINP--INRSIFE  139
            ++V +L +  ++ +++ LLGRVID++GRP+D +  +     K+  ++ + P  + R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKD--YDAMPPPAMVRQPIT  136

Query  140  EQILTGVKALDGFLPVAKGQRVGIFSGAGVGKSTLLGMIAKNSNADVNVIAFIGERGREL  199
            + ++TG++A+D+    + GQRVGIFS++GVGKSTLL+M+ + ++AD NV+ +IGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  NEFIEHELGEERLKKSVLVVSTSDESPISRYKGAYVATMIAEYFRDQGKDVALLFDSITR  259
             EFI+  L+EE  K+ V+VV+TSD +++ R ++ +VAT IAE+FRD+GK V LL DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  FANAKREMSLSLGEPPVSKGYPPSVFVEIPILLERSGFNGNGGSVTGFYTVLVEGDDFTE  319
            +A A RE++L+ GE +VS  YPP+VF  +P LLER+G  G+ GS+T+FYTVLVEGDD  E
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDDMNE  315

Query  320  PVADNIKAVLDGHIILDRNLFDRGIYPSINILSSTSRSINRIMSLEKQKLIMKARNLLSI  379
            P+AD+++++LDGHI+L R L +RG YP+I++L++ SR +  + S E ++L    R  L++
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YKDYEDLIRTGIYIKGSNKDVDFAISKYPKIIDFISQGINEIFDFENLEDKIREILS  436
            Y++ E LIR G Y +G + D D AI  YP I  F+ Q+ +E+ + E L +K+++IL+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

440) Q7M_294 in NC_017808


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  296 bits (1109),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 171/414 (42%), Positives = 288/414 (70%), Gaps = 4/414 (0%)

Query  22   GRVKKIKGLLLESLGPKCGIGDLCLIEQSCGKKIYAEVLGFNGSCVSLMAYEGFDGVEVG  81
            GR++ + + LL++  P   +G+LC I  +      AEV+G+NGS   L ++ +  G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPG---EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   DKVYSLNKKPQINLSDELLGRVIDSLGRPIDNKGPFFGNNYKELSFSSINPLDRGVFTEQ  141
            ++V +L ++ Q+ +++ LLGRVID++GRP+D +  +     K+    +  ++ R  +T+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  142  IVTGVRVLDGFLPVARGQRVGIFSGAGVGKSTLLGMIAKNSKADVNVIAFIGERGRELNE  201
            ++TG+R +D+    + GQRVGIFS++GVGKSTLL+M+ + + AD NV+ +IGERGRE+ E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  202  FIKYELGNGCFNRSVLIVSTSDESPISRYKGAYTATLVAEYFRDCGMDVMLLFDSITRFA  261
            FI + L++   +R V++V+TSD +++ R ++ + AT +AE+FRD G  V+LL DS+TR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  262  NAKREISLSMGEPPATKGYPPSVFVEIPILLERSGLNAKGSITGFYTVLVEGDDFSEPIS  321
             A REI+L+ GE + +  YPP+VF  +P LLER+G+  KGSIT+FYTVLVEGDD +EP++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  322  DNMKAVLDGHIILDRDLSDKGIYPSVNILNSTSRSLHRIVNFEKQKLISKIRNLLSIYKS  381
            D+++++LDGHI+L R L+++G YP++++L + SR +  + + E ++L + +R  L++Y+ 
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  382  YEDLIKTGIYVKGSNKEVDLAIAKYPKIIDFLSQGMQEECDFENLDNEMREILA  435
             E LI+ G Y +G + + D AI  YP I  FL Q+ +E C+ E L + +++IL+
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

441) CTC01673 in NC_004557


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  295 bits (1106),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 183/379 (49%), Positives = 269/379 (71%), Gaps = 3/379 (0%)

Query  47   FIGEVCTIYNQQNNPIVCEVVGFVEDNVILMPLGELIGIAPGCRVIPSGNPLSVKCSEEL  106
            F+GE+C I   ++ +   EVVG+   + +L P+    G+  G +V++      V  +E L
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  107  FGKVLDGLGSPLNGEKIKTGVPYPLDREPPDPLKRRRIKDVIPTGVRAIDGYLTCGEGQR  166
            +G+V+DG+G PL+G  +        D  PP ++ R+ I + + TG+RAID+  TCGEGQR
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  167  IGIFAGSGVGKSTSLGMIAKYAEADVNVICLIGERGREVLDFVEKDLGEEGMKKSIVICA  226
            +GIF+++GVGKST L+M+ + ++AD NV+ LIGERGREV +F++  L+EE  K+ +++ A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  227  TSDKPALVRIKGAFTATAIAEYFRDKGKKVILMMDSVTRFAMAQREVGLAIGEPPATKGY  286
            TSD+PAL R+++ F AT+IAE+FRD+GK+V+L+ DS+TR+A A RE++LA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  287  TPSVFAMLPRLMERSGMSDKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRDLAA  346
             P+VF+ LPRL+ER+GM++KGSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR LA 
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  347  KNHYPAIDILSSISRLMNEISVKEHKESASIGRDLIATYKEAEDLINIGAYVKGSNEKID  406
            + HYPAID+L+++SR+   ++  EH++ A+I R  +A Y+E E LI IG Y +G +   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  407  IAIKYIDSINEFLTQKVDE  425
             AI     I  FL Q  DE
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

442) MXAN_2442 in NC_008095


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  295 bits (1106),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 200/418 (48%), Positives = 293/418 (71%), Gaps = 7/418 (1%)

Query  21   RGRVTELTGLIIKASVPNVRVGELVLIKSRNRGAVKAEVVGFQGDEVMLMPLGELHGIGP  80
            +GR+ ++++ +++A +P V +GEL  IK+   G   AEVVG++G   +L P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKP---GEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  81   DSEVIPTGKPLSIKCGEALLGRVLNGIGEPMDGHPLPEEGLIDW-SVDRDCPDPFTRQRI  139
            + +V++  +   +  GEALLGRV++G+G P+DG+ LPE   + W   D   P +  RQ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE---VCWKDYDAMPPPAMVRQPI  135

Query  140  ERPLPLGVRCIDGLLTVGEGQRVGLFAGSGVGKSTLMGQIARNTKADLCVVALIGERGRE  199
             +PL  G+R ID++ T GEGQRVG+F+++GVGKSTL++ +     AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  200  VREFIEDAMGEEGMKRSVLVCATSDQPSLVRLRAAYVATAIAEYFRERGGNVLFMLDTVT  259
            VREFI+ +++EE  KR V+V ATSD+P+L R+RA +VAT+IAE+FR+ G  V+++ D++T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  260  RLARAQREIGLAVGEPPARQGYPPSVFSMLPRILERTGNSEKGKCTAIYTCLVAGGDMEE  319
            R ARA REI+LA GE +    YPP+VFS LPR+LERTG +EKG  TA+YT LV G+DM+E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  320  PIADEVRGILDGHFILNRALGERNQWPAMDVLASLSRVMSGIVSKDHKKAAGRLRELLST  379
            P+ADEVR++LDGH++L+R L+ER + PA+DVLA+LSRV + + S +H++ A+ LR  L+ 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YEKQRDLILLGAYQYGTDPRTDQAIDKYDAIIDFLKQDTHSNSGFEETVEQLIALFDE  437
            Y+    LI +G YQ G D  TD+AID Y  I  FL+Q  +   G E  +E+L  ++ E
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

443) DP2659 in NC_006138


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  295 bits (1106),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 196/418 (47%), Positives = 289/418 (70%), Gaps = 8/418 (1%)

Query  17   WGKVTKIVGLVVEGHCPHASIGSLCEISPVDHGSPIFGEVVGFRDGKVLLMPLGELRGLG  76
            WG++  + + ++++  P   +G LC I P ++    ++EVVG+ ++K LL P+    GL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  77   AGSLIRVIRQSATMRVGPHLLGRVIDGMEVPQDTlpppelseevelY-ALPPNPMLRDNI  135
             G  +  +R+   + VG  LLGRVIDG   P D    PE+      Y A+PP +M+R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD--YDAMPPPAMVRQPI  135

Query  136  CQPIDLGVRAINGLLTCGLGQRMGIMAGSGVGKSVLLGMMAKYAQADINVIALIGERGRE  195
             QP+  G+RAI+++ TCG GQR+GI +++GVGKS LL+M+ + ++AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  196  VREFIERDLGPEGLARSVIVVVTSDQSPLLRMRGAFVATAIAEFFCKQGKNVLLMMDSVT  255
            VREFI+  L+ E   R VIVV TSD+++L R+R+ FVAT+IAEFF  +GK V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  256  RFAMAMREIGLAIGEPPTTKGYTPSVFATLPKLLERAGRFKGQGSITGIYTVLVDGDDMT  315
            R+A A REI+LA GE + +  Y P+VF++LP+LLER+G    +GSIT++YTVLV+GDDM 
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  316  EPVADSVRSILDGHIVLSRAIAAKNHFPAIDILASASRVMRDIVSPEHIELAGKLRTVLA  375
            EP+AD VRS+LDGHIVLSR +A + H+PAID+LA+ SRV   + S EH +LA+ LR  LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  376  DYREAEDLINIGAYVKGTNKNIDLAIEKIEQAKLFLKQGYNQTTDMTETLEQLESLFA  433
             Y+E E LI IG Y +G + + D AI+   +   FL+Q+ ++  +    +E+L+ +++
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

444) fliI in NC_022079


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  295 bits (1106),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 174/414 (43%), Positives = 290/414 (71%), Gaps = 4/414 (0%)

Query  22   GKVRKIKGLLVESLGPKCGIGDLCLIEHRSGKRIYAEVLGLNGPFISLMAYEKFDGIEVG  81
            G+++ + + L+++  P   +G+LC I  ++G  + AEV+G+NG+   L ++    G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   DQVYSLDKKLQINLSDELLGRVIDSLGRPIDSKGQFLSNHYKELSFININPLKRGIFSEQ  141
            +QV +L ++ Q+ +++ LLGRVID++GRP+D++ ++     K+   +   ++ R  +++ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  142  IVTGIKVLDSFLPVAKGQRVGIFSGAGVGKSTLLGMIAKNSKADVNVIAFIGERGRELNE  201
            ++TGI+ +DS    + GQRVGIFS++GVGKSTLL+M+ + + AD NV+ +IGERGRE+ E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  202  FIKYDLEGECFNRSVLIVSTSDEAPISRYKGAYTATLIAEYFRDRGMDVMLLFDSITRFA  261
            FI + L  E  +R V++V+TSD +++ R ++ + AT IAE+FRD G  V+LL DS+TR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  262  NAKREISLSMGEPPATKGYPPSVFVEIPILLERSGLSDKGSITGFYTVLVEGDDFTEPIA  321
             A REI+L+ GE + +  YPP+VF  +P LLER+G+++KGSIT+FYTVLVEGDD  EP+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  322  DIMKATLDGHIILDRDLSERGIYPSVNILSSTSRSFHRIVNFERQKLISQIRNLLSIYKN  381
            D +++ LDGHI+L R L+ERG YP++++L++ SR F  + + E+++L + +R  L++Y++
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  382  YEDLIKTGIYLKGSNKEVDLAILKYPKIIDFLSQGMQEEFDFKDLDSEIREILA  435
             E LI+ G Y +G + + D AI  YP I  FL Q+ +E  +   L   +++IL+
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

445) Dacet_2311 in NC_013943


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  295 bits (1105),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 184/385 (48%), Positives = 270/385 (71%), Gaps = 15/385 (3%)

Query  39   IGTRCSIESMDGRRILAEIVGFKDDRIILMPYGESEGIAPGSHVTNESYGNTVKVSDSLL  98
            +G  C I + +    LAE+VG+++ + +L P+  + G+  G +V      + V V+++LL
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  99   GRVLDGLGNPMDGKGPITDFELVNV----YQS-PPQALEREIIKTPVSTGIKAIDNLITI  153
            GRV+DG+G P+DG+      EL +V    Y++ PP A+ R+ I  P+ TGI+AID++ T 
Sbjct  99   GRVIDGFGRPLDGR------ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATC  152

Query  154  GRGQRVGIFAGSGVGKSVTLGMIARDSDADVNVIALIGERGREVREFIERDLGEEGLKRS  213
            G GQRVGIF+++GVGKS  L+M+   +DAD NV+ LIGERGREVREFI+  L+EE  KR 
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  214  VLVIATSDQSALIRKLGAFVGTAIAEYFRSKGLNVMLMMDSVTRFAMAQREIGLTVGEPP  273
            V+V+ATSD++AL R  + FV+T+IAE+FR +G  V+L+ DS+TR+A A REI+L+ GE +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  274  TTKGYTPSVFGLLPKLLERAGTQKGKGNITGLYTVLVEADDMNDPIGDSVRSIIDGHIVL  333
             +  Y P+VF+ LP+LLER+G    KG+IT++YTVLVE+DDMN+P++D VRS++DGHIVL
Sbjct  273  VSGEYPPGVFSALPRLLERTGMG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  334  SRGLAAKNHYPAIDVLSSASRLMKEIVNDKQYANAGRMRDLLASYNEAEDLINIGAYVKG  393
            SR LA + HYPAIDVL++ SR+   + ++ +   A+ +R  LA Y+E E LI IG Y +G
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRG  391

Query  394  SNPKIDESIAKIGQIEQFLRQGIDD  418
             +   D +I    +I  FLRQ+ D+
Sbjct  392  VDTDTDKAIDTYPDICTFLRQSKDE  416

446) sctN in NC_006351


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1100),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 202/416 (49%), Positives = 297/416 (72%), Gaps = 5/416 (1%)

Query  27   SGVVRTGRVLEVIGTLIKVSGLDVALGELCELRTREGRLLQRAEVVGFTRDVALLSPFSQ  86
             G  R GR+ +V +TL++    +V +GELC ++  E    + AEVVG+    ALLSPF+ 
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTS  72

Query  87   LEQISRTTQVIGLGRPLSIPVGDALLGRVIdglgepldggpplASETLQPLIAAPPEPMS  146
               +    QV++L R   +PVG+ALLGRVIDG+G PLDG    +    +   A PP +M 
Sbjct  73   TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL-PEVCWKDYDAMPPPAMV  131

Query  147  RRMIDAAMPTGVRVVDAMMALGEGQRMGIFAPAGVGKSTLLGMFARGAACDVNVIALIGE  206
            R+ I  ++ TG+R +D++ + GEGQR+GIF+++GVGKSTLL+M+  ++  D NV+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  207  RGREVREFIELILGQAGMARSVVVCATSDRSSMERakaayaataiaEYFRDRGRRVLLMM  266
            RGREVREFI++ L++    R V+V ATSDR+++ER +A + AT+IAE+FRD G+RV+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  267  DSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGRTGSITALYTVLAEDE  326
            DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLER+GMG  GSITA+YTVL E++
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  327  SGSDPVAEEVRGILDGHMILSREVAAKNQYPAIDVLGSLSRVMPLVVDDGHMRAAARVRE  386
              ++P+A+EVR++LDGH++LSR +A + +YPAIDVL++LSRV P+V  + H + AA +R 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  387  LLAKHREVEVLLQIGEYKAGANPLADEAIAKADAIRSFFSQRTDDYAAAEDTVARL  442
             LA  +EVE+L++IGEY+ G +  +D AI     I +F+ Q  D+  ++E  + +L
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

447) fliI in NC_016830


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1103),  Expect = 6e-81, Method: Compositional matrix adjust.
 Identities = 191/381 (51%), Positives = 268/381 (71%), Gaps = 3/381 (0%)

Query  67   AEVMGFSGSKVFLMPVGSVAGIAPGARVVPLADNGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++GSK +L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPTINPLKRDPISVPLDVGIRCINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI+ PL  GIR I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +AD  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEKGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASIS  366
             +EK  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPSVISAEHMRRAQQFKQYWSRYQQSRDLISVGAYVPGGDRETDTAISLYPAMAVYLR  426
            RV P V S EH + A  +++  + YQ+   LI +G Y  G D +TD AI  YP +  +LR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QSLNDNIGMGASEAHLQSIFT  447
            QS ++  G       L+ I+T
Sbjct  412  QSKDEVCGPELLIEKLHQILT  432

448) fliI in NC_001318


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1102),  Expect = 7e-81, Method: Compositional matrix adjust.
 Identities = 178/417 (43%), Positives = 293/417 (71%), Gaps = 9/417 (2%)

Query  22   GRVQKIKGLLVESLGPQCAIGDLCLIDQRNGKKVCAEVLGFNGPYVSLMAYEGFSGIEVG  81
            GR+Q + + L+++  P   +G+LC I  + G  + AEV+G+NG+   L ++ + +G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   NKVYSLNKGLEINLSDELLGRVIDSLGRPIDNKGSFLNNSYKELIFEKINP--INRSIFE  139
            ++V +L +  ++ +++ LLGRVID++GRP+D +  + +   K+  ++ + P  + R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKD--YDAMPPPAMVRQPIT  136

Query  140  DQILTGVKVLDGFLPVAKGQRVGIFSGSGVGKSTLLGMIAKNSNADVNVIAFIGERGREL  199
            + ++TG++ +D+    + GQRVGIFS++GVGKSTLL+M+ + ++AD NV+ +IGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  NEFIEHELGEERLKKSVLVVSTSDESPISRYKGAYVATMIAEYFREQGKDVALLFDSITR  259
             EFI+  L+EE  K+ V+VV+TSD +++ R ++ +VAT IAE+FR++GK V LL DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  FANAKREMSLSLGEPPVAKGYPPSVFVEIPILLERSGFNGNGGSVTGFYTVLVEGDDFTE  319
            +A A RE++L+ GE +V+  YPP+VF  +P LLER+G  G+ GS+T+FYTVLVEGDD  E
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDDMNE  315

Query  320  PVADNIKAVLDGHIILDRDLFDRGIYPSINVLSSTSRSIHRIMSLEKQKLIMKARNLLSI  379
            P+AD+++++LDGHI+L R L +RG YP+I+VL++ SR +  + S E ++L    R  L++
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YKDYEDLIRTGIYLKGSNKDVDFAISKYPKIINFISQGINETFDFENLEDEIKEILS  436
            Y++ E LIR G Y +G + D D AI  YP I  F+ Q+ +E  + E L + + +IL+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

449) L144_01420 in NC_022048


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1102),  Expect = 7e-81, Method: Compositional matrix adjust.
 Identities = 178/417 (43%), Positives = 293/417 (71%), Gaps = 9/417 (2%)

Query  22   GRVQKIKGLLVESLGPQCAIGDLCLIDQRNGKKVCAEVLGFNGPYVSLMAYEGFSGIEVG  81
            GR+Q + + L+++  P   +G+LC I  + G  + AEV+G+NG+   L ++ + +G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   NKVYSLNKGLEINLSDELLGRVIDSLGRPIDNKGSFLNNSYKELIFEKINP--INRSIFE  139
            ++V +L +  ++ +++ LLGRVID++GRP+D +  + +   K+  ++ + P  + R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKD--YDAMPPPAMVRQPIT  136

Query  140  DQILTGVKVLDGFLPVAKGQRVGIFSGSGVGKSTLLGMIAKNSNADVNVIAFIGERGREL  199
            + ++TG++ +D+    + GQRVGIFS++GVGKSTLL+M+ + ++AD NV+ +IGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  NEFIEHELGEERLKKSVLVVSTSDESPISRYKGAYVATMIAEYFREQGKDVALLFDSITR  259
             EFI+  L+EE  K+ V+VV+TSD +++ R ++ +VAT IAE+FR++GK V LL DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  FANAKREMSLSLGEPPVAKGYPPSVFVEIPILLERSGFNGNGGSVTGFYTVLVEGDDFTE  319
            +A A RE++L+ GE +V+  YPP+VF  +P LLER+G  G+ GS+T+FYTVLVEGDD  E
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDDMNE  315

Query  320  PVADNIKAVLDGHIILDRDLFDRGIYPSINVLSSTSRSIHRIMSLEKQKLIMKARNLLSI  379
            P+AD+++++LDGHI+L R L +RG YP+I+VL++ SR +  + S E ++L    R  L++
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YKDYEDLIRTGIYLKGSNKDVDFAISKYPKIINFISQGINETFDFENLEDEIKEILS  436
            Y++ E LIR G Y +G + D D AI  YP I  F+ Q+ +E  + E L + + +IL+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

450) fliI in NC_017403


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1102),  Expect = 7e-81, Method: Compositional matrix adjust.
 Identities = 178/417 (43%), Positives = 293/417 (71%), Gaps = 9/417 (2%)

Query  22   GRVQKIKGLLVESLGPQCAIGDLCLIDQRNGKKVCAEVLGFNGPYVSLMAYEGFSGIEVG  81
            GR+Q + + L+++  P   +G+LC I  + G  + AEV+G+NG+   L ++ + +G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   NKVYSLNKGLEINLSDELLGRVIDSLGRPIDNKGSFLNNSYKELIFEKINP--INRSIFE  139
            ++V +L +  ++ +++ LLGRVID++GRP+D +  + +   K+  ++ + P  + R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKD--YDAMPPPAMVRQPIT  136

Query  140  DQILTGVKVLDGFLPVAKGQRVGIFSGSGVGKSTLLGMIAKNSNADVNVIAFIGERGREL  199
            + ++TG++ +D+    + GQRVGIFS++GVGKSTLL+M+ + ++AD NV+ +IGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  NEFIEHELGEERLKKSVLVVSTSDESPISRYKGAYVATMIAEYFREQGKDVALLFDSITR  259
             EFI+  L+EE  K+ V+VV+TSD +++ R ++ +VAT IAE+FR++GK V LL DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  FANAKREMSLSLGEPPVAKGYPPSVFVEIPILLERSGFNGNGGSVTGFYTVLVEGDDFTE  319
            +A A RE++L+ GE +V+  YPP+VF  +P LLER+G  G+ GS+T+FYTVLVEGDD  E
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDDMNE  315

Query  320  PVADNIKAVLDGHIILDRDLFDRGIYPSINVLSSTSRSIHRIMSLEKQKLIMKARNLLSI  379
            P+AD+++++LDGHI+L R L +RG YP+I+VL++ SR +  + S E ++L    R  L++
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YKDYEDLIRTGIYLKGSNKDVDFAISKYPKIINFISQGINETFDFENLEDEIKEILS  436
            Y++ E LIR G Y +G + D D AI  YP I  F+ Q+ +E  + E L + + +IL+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

451) fliI in NC_017418


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1102),  Expect = 7e-81, Method: Compositional matrix adjust.
 Identities = 178/417 (43%), Positives = 293/417 (71%), Gaps = 9/417 (2%)

Query  22   GRVQKIKGLLVESLGPQCAIGDLCLIDQRNGKKVCAEVLGFNGPYVSLMAYEGFSGIEVG  81
            GR+Q + + L+++  P   +G+LC I  + G  + AEV+G+NG+   L ++ + +G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   NKVYSLNKGLEINLSDELLGRVIDSLGRPIDNKGSFLNNSYKELIFEKINP--INRSIFE  139
            ++V +L +  ++ +++ LLGRVID++GRP+D +  + +   K+  ++ + P  + R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKD--YDAMPPPAMVRQPIT  136

Query  140  DQILTGVKVLDGFLPVAKGQRVGIFSGSGVGKSTLLGMIAKNSNADVNVIAFIGERGREL  199
            + ++TG++ +D+    + GQRVGIFS++GVGKSTLL+M+ + ++AD NV+ +IGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  NEFIEHELGEERLKKSVLVVSTSDESPISRYKGAYVATMIAEYFREQGKDVALLFDSITR  259
             EFI+  L+EE  K+ V+VV+TSD +++ R ++ +VAT IAE+FR++GK V LL DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  FANAKREMSLSLGEPPVAKGYPPSVFVEIPILLERSGFNGNGGSVTGFYTVLVEGDDFTE  319
            +A A RE++L+ GE +V+  YPP+VF  +P LLER+G  G+ GS+T+FYTVLVEGDD  E
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDDMNE  315

Query  320  PVADNIKAVLDGHIILDRDLFDRGIYPSINVLSSTSRSIHRIMSLEKQKLIMKARNLLSI  379
            P+AD+++++LDGHI+L R L +RG YP+I+VL++ SR +  + S E ++L    R  L++
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YKDYEDLIRTGIYLKGSNKDVDFAISKYPKIINFISQGINETFDFENLEDEIKEILS  436
            Y++ E LIR G Y +G + D D AI  YP I  F+ Q+ +E  + E L + + +IL+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

452) fliI in NC_006156


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1101),  Expect = 7e-81, Method: Compositional matrix adjust.
 Identities = 177/417 (43%), Positives = 292/417 (71%), Gaps = 9/417 (2%)

Query  22   GRVQKIKGLLVESLGPQCAFGDLCLIDQRNNKKVFAEVLGFNGPYVSLMAYEGFSGIEVG  81
            GR+Q + + L+++  P    G+LC I   ++   +AEV+G+NG+   L ++ + +G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   NKVYSLNKGLEINLSDELLGRVIDSLGRPIDNKGSFLKNRYKELTFEKINP--INRSIFE  139
            ++V +L +  ++ +++ LLGRVID++GRP+D +  +     K+  ++ + P  + R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKD--YDAMPPPAMVRQPIT  136

Query  140  EQILTGVKVLDGFLPVEKGQRVGIFSGAGVGKSTLLGMIAKNSNADVNVIAFIGERGREL  199
            + ++TG++ +D+      GQRVGIFS++GVGKSTLL+M+ + ++AD NV+ +IGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  NEFIEHELGEERLKKSVLVVSTSDESPISRYKGAYVATMIAEYFRDQGKDVALLFDSITR  259
             EFI+  L+EE  K+ V+VV+TSD +++ R ++ +VAT IAE+FRD+GK V LL DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  FANAKREMSLSLGEPPVSKGYPPSVFVEIPILLERSGFNGNGGSVTGFYTVLVEGDDFTE  319
            +A A RE++L+ GE +VS  YPP+VF  +P LLER+G  G+ GS+T+FYTVLVEGDD  E
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDDMNE  315

Query  320  PVADNIKAVLDGHIILDRDLFDRGIYPSINILSSTSRSINRIMNLEKQKLIMKARNLLSI  379
            P+AD+++++LDGHI+L R L +RG YP+I++L++ SR +  + + E ++L    R  L++
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YKDYEDLIRTGIYIKGSNKDVDFAISKYPKIIDFISQGINEIFDFENLEDEIREILS  436
            Y++ E LIR G Y +G + D D AI  YP I  F+ Q+ +E+ + E L + +++IL+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

453) PSEBR_a1481 in NC_015379


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1101),  Expect = 8e-81, Method: Compositional matrix adjust.
 Identities = 190/381 (50%), Positives = 268/381 (71%), Gaps = 3/381 (0%)

Query  67   AEVMGFSGSKVFLMPVGSVAGIAPGARVVPLADNGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++GSK +L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPTINPLKRDPISVPLDVGIRCINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI+ PL  GIR I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +AD  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEKGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASIS  366
             +EK  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPSVISAEHMKRAQQFKQYWSRYQQSRDLISVGAYVPGGDRETDTAISLYPAMAVYLR  426
            RV P V S EH + A  +++  + YQ+   LI +G Y  G D +TD AI  YP +  +LR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QSLNDNIGMGASEAHLQTIFA  447
            QS ++  G       L+ I++
Sbjct  412  QSKDEVCGPELLIEKLHQILT  432

454) BURPS1710b_A0422 in NC_007435


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1101),  Expect = 8e-81, Method: Compositional matrix adjust.
 Identities = 203/416 (49%), Positives = 297/416 (72%), Gaps = 5/416 (1%)

Query  27   SGVVRTGRVLEVIGTLIKVSGLDVALGELCELRTREGRLLQRAEVVGFTRDVALLSPFSQ  86
             G  R GR+ +V +TL++    +V +GELC ++  E    + AEVVG+    ALLSPF+ 
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTS  72

Query  87   LEQISRTTQVIGLGRPLSIPVGDALLGRVIdglgepldggpplASETLQPLIAAPPEPMS  146
               +    QV++L R   +PVG+ALLGRVIDG+G PLDG    +    +   A PP +M 
Sbjct  73   TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL-PEVCWKDYDAMPPPAMV  131

Query  147  RRMIDAAMPTGVRVVDAMMALGEGQRMGIFAPAGVGKSTLLGMFARGAACDVNVIALIGE  206
            R+ I  ++ TG+R +D++ + GEGQR+GIF+++GVGKSTLL+M+  ++  D NV+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  207  RGREVREFIELILGQAGMARSVVVCATSDRSSMERakaayaataiaEYFRDRGRRVLLMM  266
            RGREVREFI++ L++    R V+V ATSDR+++ER +A + AT+IAE+FRD G+RV+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  267  DSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGRTGSITALYTVLAEDE  326
            DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLER+GMG  GSITA+YTVL E++
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  327  SGSDPVAEEVRGILDGHMILSREVAAKNQYPAIDVLGSLSRVMPLVVDDGHMRAAARVRE  386
              ++P+A+EVR++LDGH++LSR +A + +YPAIDVL++LSRV P+V  + H + AA +R 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  387  LLAKHREVEVLLQIGEYKAGANPLADEAIAKADAIRSFFSQRTDDYAAAEDTIARL  442
             LA  +EVE+L++IGEY+ G +  +D AI     I +F+ Q  D+  ++E  I +L
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

455) BDL_4701 in NC_021877


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1101),  Expect = 8e-81, Method: Compositional matrix adjust.
 Identities = 203/416 (49%), Positives = 297/416 (72%), Gaps = 5/416 (1%)

Query  27   SGVVRTGRVLEVIGTLIKVSGLDVALGELCELRTREGRLLQRAEVVGFTRDVALLSPFSQ  86
             G  R GR+ +V +TL++    +V +GELC ++  E    + AEVVG+    ALLSPF+ 
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTS  72

Query  87   LEQISRTTQVIGLGRPLSIPVGDALLGRVIdglgepldggpplASETLQPLIAAPPEPMS  146
               +    QV++L R   +PVG+ALLGRVIDG+G PLDG    +    +   A PP +M 
Sbjct  73   TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL-PEVCWKDYDAMPPPAMV  131

Query  147  RRMIDAAMPTGVRVVDAMMALGEGQRMGIFAPAGVGKSTLLGMFARGAACDVNVIALIGE  206
            R+ I  ++ TG+R +D++ + GEGQR+GIF+++GVGKSTLL+M+  ++  D NV+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  207  RGREVREFIELILGQAGMARSVVVCATSDRSSMERakaayaataiaEYFRDRGRRVLLMM  266
            RGREVREFI++ L++    R V+V ATSDR+++ER +A + AT+IAE+FRD G+RV+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  267  DSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGRTGSITALYTVLAEDE  326
            DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLER+GMG  GSITA+YTVL E++
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  327  SGSDPVAEEVRGILDGHMILSREVAAKNQYPAIDVLGSLSRVMPLVVDDGHMRAAARVRE  386
              ++P+A+EVR++LDGH++LSR +A + +YPAIDVL++LSRV P+V  + H + AA +R 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  387  LLAKHREVEVLLQIGEYKAGANPLADEAIAKADAIRSFFSQRTDDYAAAEDTIARL  442
             LA  +EVE+L++IGEY+ G +  +D AI     I +F+ Q  D+  ++E  I +L
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

456) LILAB_19900 in NC_015711


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1101),  Expect = 8e-81, Method: Compositional matrix adjust.
 Identities = 199/418 (48%), Positives = 293/418 (71%), Gaps = 7/418 (1%)

Query  21   RGRVTELTGLIIKASVPNVRVGELVLIKSRNRGAVKAEVVGFQGDEVMLMPLGELQGIGP  80
            +GR+ ++++ +++A +P V +GEL  IK+   G   AEVVG++G   +L P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKP---GEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  81   DSEVIPTGRPLSIKCGEALLGRVLNGIGEPMDGQPLPEEGLIEW-SVDRDCPDPFTRQRI  139
            + +V++  R   +  GEALLGRV++G+G P+DG+ LPE   + W   D   P +  RQ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE---VCWKDYDAMPPPAMVRQPI  135

Query  140  ERPLPLGVRCIDGLLTVGEGQRVGLFAGSGVGKSTLMGQIARNTQADLCVVALIGERGRE  199
             +PL  G+R ID++ T GEGQRVG+F+++GVGKSTL++ +    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  200  VREFIEDAMGEEGMKRSVLVCATSDQPSLVRLRAAYVATAIAEYFRERGGNVLFMLDTVT  259
            VREFI+ +++EE  KR V+V ATSD+P+L R+RA +VAT+IAE+FR+ G  V+++ D++T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  260  RLARAQREIGLAVGEPPARQGYPPSVFSMLPRILERTGNSEKGKCTAIYTCLVAGGDMEE  319
            R ARA REI+LA GE +    YPP+VFS LPR+LERTG +EKG  TA+YT LV G+DM+E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  320  PIADEVRGILDGHFILNRALGERNQWPAMDVLASLSRVMSGIVSKDHKKAAGRLRELLST  379
            P+ADEVR++LDGH++L+R L+ER + PA+DVLA+LSRV + + S +H++ A+ LR  L+ 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YEKQRDLILLGAYQYGTDPRTDQAIDKYDAIIDFLKQDTHSNSAFEDTVSQLIALFDE  437
            Y+    LI +G YQ G D  TD+AID Y  I  FL+Q  +   + E  + +L  ++ E
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

457) PBPRA0025 in NC_006370


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1101),  Expect = 8e-81, Method: Compositional matrix adjust.
 Identities = 180/380 (48%), Positives = 270/380 (72%), Gaps = 6/380 (1%)

Query  64   AEVVGFDRNASVLMPIRHTTGLRPGSRVFPLHGDSKINVGYSMLGRVLNGLGEPLDSRGP  123
            AEVVG++ + ++L P+  T+GL+ G +V +L+   ++ VG ++LGRV++G+G PLD+R  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  124  ITADQRINLQGETINPLQRLPISTQLDVGVRVINSMLSVGKGQRMGLFAGSGVGKSVLLG  183
            +    + + ++    ++ R PI+  L  G+R I+S+ + G GQR+G+F+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  184  MMTRNTTAEITVVGLIGERGREVREFIEHSLGPEGMKNAVVIASPADDPPLMRLRASMLC  243
            M+     A+  V+ LIGERGREVREFI+ +L+ E  K  V++ + +D P+L R+RA  + 
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  244  HRIAEFFRDQGHDVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFSMLPQLVERAG  303
              IAEFFRD+G  V+LL DSLTRYA+A REIALA GE + +  YPP+VFS LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  304  NGATEKGSITAFYTVLSEGDDQQDPIADAARAILDGHIVLNRELAEQGHYPAIDIEQSIS  363
             G  EKGSITAFYTVL EGDD ++P+AD  R++LDGHIVL+R LAE+GHYPAID+  ++S
Sbjct  294  MG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  364  RAMPQVVTPEQLQKAQQVKQLYARYRQVQDLISLGGYQQGQDQNLDMAVHYYPEICDFLQ  423
            R  P V + E+ Q A  +++  A Y++V+ LI +G YQ+G D + D A++ YP+IC FL+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  424  QGMNE---RVLLADSQQQLM  440
            Q+ +E     LL +  +Q++
Sbjct  412  QSKDEVCGPELLIEKLHQIL  431

458) fliI in NC_011728


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1101),  Expect = 8e-81, Method: Compositional matrix adjust.
 Identities = 178/417 (43%), Positives = 292/417 (71%), Gaps = 9/417 (2%)

Query  22   GRVQKIKGLLVESLGPQCAIGDLCLIDQRNGKKVCAEVLGFNGPYVSLMAYEGFNGIEVG  81
            GR+Q + + L+++  P   +G+LC I  + G  + AEV+G+NG+   L ++ +  G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   NKVYSLNKGLEINLSDELLGRVIDSLGRPIDNKGSFLNNSYKELIFEKINP--INRSIFE  139
            ++V +L +  ++ +++ LLGRVID++GRP+D +  + +   K+  ++ + P  + R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKD--YDAMPPPAMVRQPIT  136

Query  140  DQILTGVKVLDGFLPVAKGQRVGIFSGSGVGKSTLLGMIAKNSNADVNVIAFIGERGREL  199
            + ++TG++ +D+    + GQRVGIFS++GVGKSTLL+M+ + ++AD NV+ +IGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  NEFIEHELGEERLKKSVLVVSTSDESPISRYKGAYVATMIAEYFREQGKDVALLFDSITR  259
             EFI+  L+EE  K+ V+VV+TSD +++ R ++ +VAT IAE+FR++GK V LL DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  FANAKREMSLSLGEPPVAKGYPPSVFVEIPILLERSGFNGNGGSVTGFYTVLVEGDDFTE  319
            +A A RE++L+ GE +V+  YPP+VF  +P LLER+G  G+ GS+T+FYTVLVEGDD  E
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDDMNE  315

Query  320  PVADNIKAVLDGHIILDRDLFDRGIYPSINVLSSTSRSIHRIMSLEKQKLIMKARNLLSI  379
            P+AD+++++LDGHI+L R L +RG YP+I+VL++ SR +  + S E ++L    R  L++
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YKDYEDLIRTGIYLKGSNKDVDFAISKYPKIINFISQGINETFDFENLEDEIKEILS  436
            Y++ E LIR G Y +G + D D AI  YP I  F+ Q+ +E  + E L + + +IL+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

459) sctN in NC_017832


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1100),  Expect = 9e-81, Method: Compositional matrix adjust.
 Identities = 203/416 (49%), Positives = 297/416 (72%), Gaps = 5/416 (1%)

Query  21   SGVVRTGRVLEVIGTLIKVSGLDVALGELCELRTREGRLLQRAEVVGFTRDVALLSPFSQ  80
             G  R GR+ +V +TL++    +V +GELC ++  E    + AEVVG+    ALLSPF+ 
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTS  72

Query  81   LEQISRTTQVIGLGRPLSIPVGDALLGRVIdglgepldggpplASETLQPLIAAPPEPMS  140
               +    QV++L R   +PVG+ALLGRVIDG+G PLDG    +    +   A PP +M 
Sbjct  73   TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL-PEVCWKDYDAMPPPAMV  131

Query  141  RRMIDAAMPTGVRVVDAMMALGEGQRMGIFAPAGVGKSTLLGMFARGAACDVNVIALIGE  200
            R+ I  ++ TG+R +D++ + GEGQR+GIF+++GVGKSTLL+M+  ++  D NV+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  201  RGREVREFIELILGQAGMARSVVVCATSDRSSMERakaayaataiaEYFRDRGRRVLLMM  260
            RGREVREFI++ L++    R V+V ATSDR+++ER +A + AT+IAE+FRD G+RV+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  261  DSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGRTGSITALYTVLAEDE  320
            DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLER+GMG  GSITA+YTVL E++
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  321  SGSDPVAEEVRGILDGHMILSREVAAKNQYPAIDVLGSLSRVMPLVVDDGHMRAAARVRE  380
              ++P+A+EVR++LDGH++LSR +A + +YPAIDVL++LSRV P+V  + H + AA +R 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  381  LLAKHREVEVLLQIGEYKAGANPLADEAIAKADAIRSFFSQRTDDYAAAEDTIARL  436
             LA  +EVE+L++IGEY+ G +  +D AI     I +F+ Q  D+  ++E  I +L
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

460) BURPS668_A1990 in NC_009075


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  294 bits (1100),  Expect = 9e-81, Method: Compositional matrix adjust.
 Identities = 203/416 (49%), Positives = 297/416 (72%), Gaps = 5/416 (1%)

Query  21   SGVVRTGRVLEVIGTLIKVSGLDVALGELCELRTREGRLLQRAEVVGFTRDVALLSPFSQ  80
             G  R GR+ +V +TL++    +V +GELC ++  E    + AEVVG+    ALLSPF+ 
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTS  72

Query  81   LEQISRTTQVIGLGRPLSIPVGDALLGRVIdglgepldggpplASETLQPLIAAPPEPMS  140
               +    QV++L R   +PVG+ALLGRVIDG+G PLDG    +    +   A PP +M 
Sbjct  73   TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL-PEVCWKDYDAMPPPAMV  131

Query  141  RRMIDAAMPTGVRVVDAMMALGEGQRMGIFAPAGVGKSTLLGMFARGAACDVNVIALIGE  200
            R+ I  ++ TG+R +D++ + GEGQR+GIF+++GVGKSTLL+M+  ++  D NV+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  201  RGREVREFIELILGQAGMARSVVVCATSDRSSMERakaayaataiaEYFRDRGRRVLLMM  260
            RGREVREFI++ L++    R V+V ATSDR+++ER +A + AT+IAE+FRD G+RV+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  261  DSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGRTGSITALYTVLAEDE  320
            DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLER+GMG  GSITA+YTVL E++
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  321  SGSDPVAEEVRGILDGHMILSREVAAKNQYPAIDVLGSLSRVMPLVVDDGHMRAAARVRE  380
              ++P+A+EVR++LDGH++LSR +A + +YPAIDVL++LSRV P+V  + H + AA +R 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  381  LLAKHREVEVLLQIGEYKAGANPLADEAIAKADAIRSFFSQRTDDYAAAEDTIARL  436
             LA  +EVE+L++IGEY+ G +  +D AI     I +F+ Q  D+  ++E  I +L
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

461) BURPS1106A_A1898 in NC_009078


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  293 bits (1098),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 203/416 (49%), Positives = 296/416 (72%), Gaps = 5/416 (1%)

Query  27   SGVVRTGRVLEVIGTLIKVSGLDVALGELCELRTREGRLLQRAEVVGFTRDVALLSPFSQ  86
             G  R GR+ +V +TL++    +V +GELC ++  E    + AEVVG+    ALLSPF+ 
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTS  72

Query  87   LEQISRTTQVIGLGRPLSIPVGDALLGRVIdglgapldggpplaSETLQPLIAAPPEPMS  146
               +    QV++L R   +PVG+ALLGRVIDG+G PLDG         +   A PP +M 
Sbjct  73   TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV-CWKDYDAMPPPAMV  131

Query  147  RRMIDAAMPTGVRVVDAMMALGEGQRMGIFAPAGVGKSTLLGMFARGAACDVNVIALIGE  206
            R+ I  ++ TG+R +D++ + GEGQR+GIF+++GVGKSTLL+M+  ++  D NV+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  207  RGREVREFIELILGQAGMARSVVVCATSDRSSMERakaayaataiaEYFRDRGRRVLLMM  266
            RGREVREFI++ L++    R V+V ATSDR+++ER +A + AT+IAE+FRD G+RV+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  267  DSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGRTGSITALYTVLAEDE  326
            DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLER+GMG  GSITA+YTVL E++
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  327  SGSDPVAEEVRGILDGHMILSREVAAKNQYPAIDVLGSLSRVMPLVVDDGHMRAAARVRE  386
              ++P+A+EVR++LDGH++LSR +A + +YPAIDVL++LSRV P+V  + H + AA +R 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  387  LLAKHREVEVLLQIGEYKAGANPLADEAIAKADAIRSFFSQRTDDYAAAEDTIARL  442
             LA  +EVE+L++IGEY+ G +  +D AI     I +F+ Q  D+  ++E  I +L
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

462) BPC006_II1879 in NC_018529


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  293 bits (1098),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 203/416 (49%), Positives = 296/416 (72%), Gaps = 5/416 (1%)

Query  27   SGVVRTGRVLEVIGTLIKVSGLDVALGELCELRTREGRLLQRAEVVGFTRDVALLSPFSQ  86
             G  R GR+ +V +TL++    +V +GELC ++  E    + AEVVG+    ALLSPF+ 
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTS  72

Query  87   LEQISRTTQVIGLGRPLSIPVGDALLGRVIdglgapldggpplaSETLQPLIAAPPEPMS  146
               +    QV++L R   +PVG+ALLGRVIDG+G PLDG         +   A PP +M 
Sbjct  73   TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV-CWKDYDAMPPPAMV  131

Query  147  RRMIDAAMPTGVRVVDAMMALGEGQRMGIFAPAGVGKSTLLGMFARGAACDVNVIALIGE  206
            R+ I  ++ TG+R +D++ + GEGQR+GIF+++GVGKSTLL+M+  ++  D NV+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  207  RGREVREFIELILGQAGMARSVVVCATSDRSSMERakaayaataiaEYFRDRGRRVLLMM  266
            RGREVREFI++ L++    R V+V ATSDR+++ER +A + AT+IAE+FRD G+RV+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  267  DSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGRTGSITALYTVLAEDE  326
            DSLTR+ARA+REI+LAAGE +    +PP+VF+ LPRLLER+GMG  GSITA+YTVL E++
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  327  SGSDPVAEEVRGILDGHMILSREVAAKNQYPAIDVLGSLSRVMPLVVDDGHMRAAARVRE  386
              ++P+A+EVR++LDGH++LSR +A + +YPAIDVL++LSRV P+V  + H + AA +R 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  387  LLAKHREVEVLLQIGEYKAGANPLADEAIAKADAIRSFFSQRTDDYAAAEDTIARL  442
             LA  +EVE+L++IGEY+ G +  +D AI     I +F+ Q  D+  ++E  I +L
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

463) fliI in NC_012489


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  293 bits (1096),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 201/421 (48%), Positives = 293/421 (70%), Gaps = 9/421 (2%)

Query  18   DALTDRL----GRAERFAPYGRVTRVVGLVVEATGIDVGLGSLCRVTNHARDRSVLAEVV  73
            + L +RL      ++ +   GR+  V + +++A   +V +G LC +         LAEVV
Sbjct  3    NELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVV  58

Query  74   GFNERNVLLMPLGELDGLHAGASVQPLGRSFGVDVGPGLLGRVLNGLGHPIDGKGKLDTI  133
            G+N  + LL P+    GLH G  V +L R   V VG +LLGRV++G+G+P+DG+  L  +
Sbjct  59   GINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEV  117

Query  134  ERVSLSAEPPNPLQRETIDRPMETGVRAIDGLLTIGRGQRVGIFAGSGVGKSTMLGMVAR  193
             +    A PP ++ R+ I +P+ TG+RAID++ T G GQRVGIF+++GVGKST+L+M+  
Sbjct  118  CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  194  SAKADVNVIALLGERGREVREFLENSLGAEGLARSVVIVATGDQaalvrargalvataIA  253
            ++ AD NV+ L+GERGREVREF++ +L+ E   R V++VAT+D++AL R R+ +VAT+IA
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  254  EYFRDQGKEVLLMVDSVTRVAMAWREIGLATGEPPTTKGYPPSVFANLPRLLERAGNGER  313
            E+FRD+GK V+L+ DS+TR A A REI+LA+GE + +  YPP+VF+ LPRLLER+G GE+
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK  297

Query  314  GGITGIYTVLVDGDDFNEPVADAARSILDGHIVLTRRLAAQNHFPAIDVLDSKSRVKDHI  373
            G+IT++YTVLV+GDD NEP+AD  RS+LDGHIVL+RRLA + H+PAIDVL + SRV   +
Sbjct  298  GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVV  357

Query  374  TNEAQRRSGAAMLRLEAAYREKEDLIMVGAYQKGSDPYVDAAIAYRHRVLEFLQQRPDEI  433
            T++ +R+ +A + R  A Y+E E LI +G YQ+G D   D AI     +  FL+Q  DE+
Sbjct  358  TSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEV  417

Query  434  T  434
             
Sbjct  418  C  418

464) Closa_3466 in NC_014376


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  293 bits (1096),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 186/414 (45%), Positives = 285/414 (69%), Gaps = 5/414 (1%)

Query  19   GKIENIVGMSMEASGGKASIGDIAYIYNEDRKEQIPVEVVGFKDDKIQLMAYENMNGIAA  78
            G+I+++ +  ++A      +G++  I    +  +   EVVG+++ K  L ++ +  G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI----KPGEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  79   GSFVRNTKRRLKIPVGDFLRGRIIDAKGEPMDGKGPFDSSRYYYVENPYINPLTRPPITD  138
            G  V   +RR ++PVG+ L GR+ID+ G P+DG+   +  +  Y   P   ++ R PIT+
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP-PPAMVRQPITQ  137

Query  139  RLEFGVKAIDGMNTIGKGQRIGIFAGSGVGKSTLLGMIARNVKADINVVALVGERGREVR  198
             L  G++AID++ T G GQR+GIF+++GVGKSTLL+M+     AD NV+ L+GERGREVR
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  199  EFIEKDLGPEGMERSVLVVATSDQPAMLRMKCPLVATTIAEYFKNQGKDVLLMMDSLTRF  258
            EFI+  L+ E   R V+VVATSD+PA+ R++  +VATTIAE+F+++GK V+L+ DSLTR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  259  AMAQREIGLAIGEPPVARGYTPSIYAEFPKLLERSGNFGEGSITGIYTVLVEGDDTNEPI  318
            A A REI+LA GE +V+  Y P++++ +P+LLER+G    GSIT++YTVLVEGDD NEP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  319  ADTVRGIVDGHIVLSRKLANANHFPAIDVSASISRLMTNIVSEEHRRLASEIRDILSIYE  378
            AD VR+++DGHIVLSR+LA+  H+PAIDV A++SR+   + S+EHR+LA+ +R  L++Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  379  KNEDLISIGAYKSGTNPKLDQAIARIDKVNQFLCQGIQENDSYEDILVKMKAIL  432
              E LI IG Y+ G +   D+AI     +  FL Q+ +E  + E ++ K+  IL
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

465) BH0288 in NC_010673


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  293 bits (1096),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 172/414 (42%), Positives = 291/414 (71%), Gaps = 4/414 (0%)

Query  23   GRVRKIKGLLIESVGPKCGIGDLCFIQQVSGKKIYAEVLGFNGCFVSLMAYEGFDGIEVG  82
            GR++ + + L+++  P   +G+LC I+  +G  + AEV+G+NG    L ++ +  G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK--PGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  83   DKVYSLNKKPQINLSDELLGRVIDSLGRPIDNKGQFLGNHYKELSFSSINPLKRGIFSKQ  142
            ++V +L ++ Q+ +++ LLGRVID++GRP+D + ++     K+    +  ++ R  +++ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  143  IVTGVRVLDGFLPVAKGQRVGIFSGAGVGKSTLLGMIAKNSKADVNVIAFIGERGRELNE  202
            ++TG+R +D+    + GQRVGIFS++GVGKSTLL+M+ + + AD NV+ +IGERGRE+ E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  203  FIEYDLGEECFKKSVLIVSTSDESPISRYKGAYTATLIAEHFRDRGMDVMLLFDSITRFA  262
            FI++ L+EE  K+ V++V+TSD +++ R ++ + AT IAE FRD G  V+LL DS+TR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  263  NAKREISLSMGELPATKGYPPSVFVEIPILLERLGLNGKGSITGFYTVLVESDDFTEPIA  322
             A REI+L+ GE + +  YPP+VF  +P LLER G+  KGSIT+FYTVLVE+DD  EP+A
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  323  DNMKAVLDGHIILDRDLSDRGIYPSVNILSSTSRSLHRIVNFEKQKLISKIRNLLSIYKN  382
            D+++++LDGHI+L R L++RG YP++++L++ SR +  + + E ++L + +R  L++Y++
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  383  YEDLIKTGIYMKGSNKEVDLAIAKYPKIIDFLSQGMQEEFDFENLDNEMREILA  436
             E LI+ G Y +G + + D AI  YP I  FL Q+ +E  + E L + +++IL+
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

466) fliI in NC_011244


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  293 bits (1097),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 171/414 (42%), Positives = 286/414 (70%), Gaps = 4/414 (0%)

Query  23   GRVKKIKGLLLESLGPKCGIGDLCLIEQSCGKKIYAEVLGFNGSCVSLMAYEGFDGIKVG  82
            GR++ + + LL++  P   +G+LC I  +      AEV+G+NGS   L ++ +  G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPG---EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  83   DKVYSLNKKPQINLSDELLGRVIDSLGRPIDNKGPFFGNNYKELSFSSINPLDRGVFTEQ  142
            ++V +L ++ Q+ +++ LLGRVID++GRP+D +  +     K+    +  ++ R  +T+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  143  IVTGVRVLDGFLPVARGQRVGIFSGAGVGKSTLLGMIAKNSKADVNVIAFIGERGRELNE  202
            ++TG+R +D+    + GQRVGIFS++GVGKSTLL+M+ + + AD NV+ +IGERGRE+ E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  203  FIKYELGNGCFNRSVLIVSTSDESPISRYKGAYTATLVAEHFRDCGMDVMLLFDSITRFA  262
            FI + L++   +R V++V+TSD +++ R ++ + AT +AE FRD G  V+LL DS+TR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  263  NAKREISLSMGEPPATKGYPPSVFVEIPILLERSGLNAKGSITGFYTVLVEGDDFSEPIS  322
             A REI+L+ GE + +  YPP+VF  +P LLER+G+  KGSIT+FYTVLVEGDD +EP++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  323  DNMKAVLDGHIILDRDLSDKGIYPSVNILNSTSRSLHRIVNFEKQKLISKIRNLLSIYKS  382
            D+++++LDGHI+L R L+++G YP++++L + SR +  + + E ++L + +R  L++Y+ 
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  383  YEDLIKTGIYVKGSNKEVDLAIAKYPKIIDFLSQGMQEECDFENLDNEMREILA  436
             E LI+ G Y +G + + D AI  YP I  FL Q+ +E C+ E L + +++IL+
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

467) Cbei_4265 in NC_009617


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  292 bits (1095),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 180/381 (48%), Positives = 271/381 (72%), Gaps = 6/381 (1%)

Query  43   FVGELCIIYNEKNVPVNCEVVGFRDEFVILMPLDELIGISPGCRVVPQRKPLSVKCSDKL  102
            F+GELC I    +++   EVVG+ +   +L P+    G+  G +V++ R+   V  ++ L
Sbjct  41   FMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  103  LGHIIDGLGNPLDCDSIS-MDGEEYPLENDAPDPLKRKRIKEIMPTGVRAIDGFLTCGDG  161
            LG++IDG+G PLD   ++ +   +Y  +  +P ++ R+ I + + TG+RAID+  TCG+G
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  162  QRIGIFAGSGVGKSTTLGMIAREAKADVNVISLIGERGREVLEFIEKDLGPEGMKKSVVV  221
            QR+GIF+++GVGKST L+M+   + AD NV+ LIGERGREV EFI+  L+ E  K+ V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  222  CATSDKPALIRIKGALTATAIAEYFRDKGKKVILMMDSVTRFAMAQREVGLAIGEPPATK  281
             ATSD+PAL R+++ + AT+IAE+FRD+GK+V+L+ DS+TR+A A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  282  GYTPSVFAKLPKLMERSGTSADGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRSL  341
             Y P+VF+ LP+L+ER+G +  GSITAFYTVLV+GDD NEP+AD VR++LDGHIVLSR L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  342  AHKNHYPAIDILNSVSRLMNTIAPKEHKEAASMARDLLATYKDSEDLINIGAYVKGSNKK  401
            A++ HYPAID+L ++SR+   +++ EH++ A++ R  LA Y++ E LI IG Y +G +  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  402  IDMAINYNDSLNDFLCQGIDE  422
             D AI+    +  FL Q+ DE
Sbjct  396  TDKAIDTYPDICTFLRQSKDE  416

468) BgCN_0293 in NC_018747


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  292 bits (1093),  Expect = 3e-80, Method: Compositional matrix adjust.
 Identities = 179/417 (43%), Positives = 292/417 (71%), Gaps = 9/417 (2%)

Query  22   GRVQKIKGLLVESLGPQCAVGDLCLIDQRNNKKVCAEVLGFNGPYVSLMTYEGFSGIEVG  81
            GR+Q + + L+++  P   +G+LC I   ++    AEV+G+NG+   L  + + +G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   NKVYSLNKGLEINLSDELLGRVIDSLGRPIDNKGSFLKNRYKELTFEKINP--INRSIFE  139
            ++V +L +  ++ +++ LLGRVID++GRP+D +  +     K+  ++ + P  + R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKD--YDAMPPPAMVRQPIT  136

Query  140  EQILTGVKALDGFLPVAKGQRVGIFSGAGVGKSTLLGMIAKNSNADVNVIAFIGERGREL  199
            + ++TG++A+D+    + GQRVGIFS++GVGKSTLL+M+ + ++AD NV+ +IGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  NEFIEHELGEERLKKSVLVVSTSDESPISRYKGAYVATMIAEYFRDQGKDVALLFDSITR  259
             EFI+  L+EE  K+ V+VV+TSD +++ R ++ +VAT IAE+FRD+GK V LL DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  FANAKREMSLSLGEPPVSKGYPPSVFVEIPILLERSGFNGNGGSVTGFYTVLVEGDDFTE  319
            +A A RE++L+ GE +VS  YPP+VF  +P LLER+G  G+ GS+T+FYTVLVEGDD  E
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDDMNE  315

Query  320  PVADNIKAVLDGHIILDRDLFDRGIYPSINILSSTSRSINRIMSLEKQKLIMKARNLLSI  379
            P+AD+++++LDGHI+L R L +RG YP+I++L++ SR +  + S E ++L    R  L++
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YKDYEDLIRTGIYIKGSNKDVDFAISKYPKIIDFISQGINEIFDFENLEDEIRAILS  436
            Y++ E LIR G Y +G + D D AI  YP I  F+ Q+ +E+ + E L + ++ IL+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

469) BT0288 in NC_008710


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  292 bits (1094),  Expect = 3e-80, Method: Compositional matrix adjust.
 Identities = 175/415 (43%), Positives = 289/415 (70%), Gaps = 6/415 (1%)

Query  23   GKVRKIKGLLVESLGPKCGIGDLCLIEQRSGKKIYAEVLGLNGSFVNLMAYEGFDGIEIG  82
            G+++ + + L+++  P   +G+LC I  ++G  + AEV+G+NGS   L ++ +  G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  83   DQVCSLGKKLQINLSDELLGRVIDSLGRPIDNKG-QFFCNYYKELSFSNINPLSRGVFSE  141
            +QV +L ++ Q+ +++ LLGRVID++GRP+D +     C   K+       ++ R  +++
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMVRQPITQ  137

Query  142  QIVTGVKVLDGFLPVAKGQRVGIFSGAGVGKSTLLGMIAKNSKADVNVIAFIGERGRELN  201
             ++TG++ +D+    + GQRVGIFS++GVGKSTLL+M+ + + AD NV+ +IGERGRE+ 
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  202  EFIKYDLGEECFKRSVLIVSTSDASPIARYKGAYTATLIAEYFRDCGMDVMLLFDSITRF  261
            EFI + L+EE  KR V++V+TSD +++ R ++ + AT IAE+FRD G  V+LL DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  262  ANAKREISLSMGEPPATKGYPPSVFVEIPILLERSGLNSKGSITGFYTVLVEGDDFTEPI  321
            A A REI+L+ GE + +  YPP+VF  +P LLER+G+  KGSIT+FYTVLVEGDD  EP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  322  ADNMKAVLDGHIILDRDLSDRGIYPSVNILSSTSRSLHRIVNFEKQKLISKIRNLLSIYK  381
            AD+++++LDGHI+L R L++RG YP++++L++ SR +  + + E ++L + +R  L++Y+
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  382  SYEDLIKTGIYIKGSNKEVDLAVAKYPKIIDFLSQGIQEEFDFENLDSELREILA  436
              E LI+ G Y +G + + D A+  YP I  FL Q+ +E  + E L   L++IL+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

470) fliI in NC_007492


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  292 bits (1092),  Expect = 4e-80, Method: Compositional matrix adjust.
 Identities = 186/371 (51%), Positives = 267/371 (72%), Gaps = 3/371 (0%)

Query  61   HPSQVEAEVMGFSGSKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRA  120
             P++  AEV+G++GSK +L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRP  108

Query  121  LDGKGGMKAEDWVPMDGPTINPLNRDPISVPLDVGIRSINGLLTVGRGQRLGLFAGTGVG  180
            LDG+  +    W   D+    ++ R+PI+ PL  GIR+I+++ T G GQR+G+F++ GVG
Sbjct  109  LDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  181  KSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRL  240
            KS LL+M+    +AD  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  241  RAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPK  300
            RA    T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  301  LVERAGNAEKGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAID  360
            L+ER+G +EK  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID
Sbjct  288  LLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  361  IEASISRVMPAVVAPEHMQRAQYFKQLWSRYQQSRDLISVGAYVAGGDRETDLAINLQPQ  420
            + A++SRV P V + EH Q A  +++  + YQ+   LI +G Y  G D +TD AI+  P+
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  421  LVRYLRQGLND  431
            +  +LRQ+ ++
Sbjct  406  ICTFLRQSKDE  416

471) fliI in NC_020291


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  291 bits (1091),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 183/403 (46%), Positives = 283/403 (71%), Gaps = 7/403 (1%)

Query  22   YCE-GVVKKVIGLTIEVQGIKAFVGELCIIYNERNFPVNCEVVGFKEEFVILMPLDELIG  80
            YC  G ++ V +  ++      F+GELC I    +++   EVVG++    +L P+    G
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA---EVVGINGSKALLSPFTSTAG  75

Query  81   ISPGCRVVPQRKPLSIKCSDKLLGHIIDGLGKPLDCDSIS-MDGEEYPLENEAPDPLKRK  139
            +  G +V++ R+   +  ++ LLG++IDG+G+PLD   ++ +   +Y  +  +P ++ R+
Sbjct  76   LHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQ  133

Query  140  RIKEIMPTGVRAIDGFLTCGDGQRIGIFAGSGVGKSTTLGMIAREAKADVNVISLIGERG  199
             I + + TG+RAID+  TCG+GQR+GIF+++GVGKST L+M+   + AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  200  REVLEFIEKDLGPEGMKKSVVVCATSDKPALIRIKGALTATAIAEYFRDKGKKVILMMDS  259
            REV EFI+  L+ E  K+ V+V ATSD+PAL R+++ + AT+IAE+FRD+GK+V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  260  VTRFAMAQREVGLAIGEPPATKGYTPSVFAKLPKLMERSGTSADGSITAFYTVLVDGDDF  319
            +TR+A A RE++LA GE + +  Y P+VF+ LP+L+ER+G +  GSITAFYTVLV+GDD 
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  320  NEPIADAVRGILDGHIVLSRDLAHKNHYPAIDILNSVSRLMSQIAPDEHKKSASIARDLL  379
            NEP+AD VR++LDGHIVLSR LA++ HYPAID+L ++SR+ + ++++EH++ A+I R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  380  ATYKDSEDLINIGAYVKGSNRKIDMAINYNEMLNDFLCQGIEE  422
            A Y++ E LI IG Y +G +   D AI+    +  FL Q+ +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

472) fliI in NC_021237


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  291 bits (1090),  Expect = 6e-80, Method: Compositional matrix adjust.
 Identities = 184/365 (51%), Positives = 262/365 (72%), Gaps = 3/365 (0%)

Query  67   AEVMGFSGSKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGA  126
            AEV+G++GSK +L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-E  113

Query  127  MRAEDWVPMDGPTINPLKRDPISQPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI+QPL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +AD  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPAVISPDNMARAQYFKQLWSRYQQARDLISVGAYVAGGDRDTDTAISLHPAMVAYLR  426
            RV P V S ++   A  +++  + YQ+   LI +G Y  G D DTD AI   P + ++LR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QGLND  431
            Q+ ++
Sbjct  412  QSKDE  416

473) fliI in NC_004129


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  291 bits (1090),  Expect = 6e-80, Method: Compositional matrix adjust.
 Identities = 184/365 (51%), Positives = 262/365 (72%), Gaps = 3/365 (0%)

Query  67   AEVMGFSGSKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGA  126
            AEV+G++GSK +L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-E  113

Query  127  MRAEDWVPMDGPTINPLKRDPISQPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI+QPL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +AD  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPAVISPDNMARAQYFKQLWSRYQQARDLISVGAYVAGGDRDTDTAISLHPAMVAYLR  426
            RV P V S ++   A  +++  + YQ+   LI +G Y  G D DTD AI   P + ++LR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QGLND  431
            Q+ ++
Sbjct  412  QSKDE  416

474) fliI in NC_021499


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  291 bits (1090),  Expect = 6e-80, Method: Compositional matrix adjust.
 Identities = 188/381 (50%), Positives = 268/381 (71%), Gaps = 3/381 (0%)

Query  67   AEVMGFAGSKIYLMPVGSLSGIAPGARVVPLPDTGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G+ GSK  L P  S +G+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPTINPLKRHPISEPLDVGIRSINALLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +A+  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEQGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             +E+  GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVSPEQMKLAQRFKQLWSRYQQSRDLISVGAYVAGGDPDTDLAIARQPTMSAFLR  426
            RV P V S E+ +LA  +++  + YQ+   LI +G Y  G D DTD AI   P + +FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QALDESEGLAPSAQRLAASLG  447
            Q+ DE  G     ++L   L 
Sbjct  412  QSKDEVCGPELLIEKLHQILT  432

475) CDBI1_01350 in NC_017179


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  291 bits (1090),  Expect = 6e-80, Method: Compositional matrix adjust.
 Identities = 188/416 (46%), Positives = 288/416 (70%), Gaps = 11/416 (2%)

Query  27   GRVKKIIG--LTVEVEGIKAFVGELCVIYNQVNKPVN--CEVVGFKDKEVILMALGELTL  82
            GR++ + +  L   + G+  F+GELC I     KP +   EVVG+++   +L ++   + 
Sbjct  23   GRIQDVSATLLNAWLPGV--FMGELCCI-----KPGEELAEVVGINGSKALLSPFTSTAG  75

Query  83   IAPGCKVISKGIPLSVMCSDNLLGKVLDGLGNPIDNSDAVLGDRYNLNNEPPDPMKRKKI  142
            +  G +V++      V  ++ LLG+V+DG+G P+D  +     + + +  PP +M R+ I
Sbjct  76   LHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPI  135

Query  143  RNIMETGVRAIDAFTTCGEGQRIGIFAGSGVGKSTTLGMIARNAKADVNVIALIGERGRE  202
             + + TG+RAID+ +TCGEGQR+GIF+++GVGKST L+M+   + AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VLDFIDKDLGEEGMKKSVVVCATSDKAPLVRLKGALTATAIAEYFRDQGKKVILMMDSVT  262
            V +FID  L+EE  K+ V+V ATSD+++L R+++ + AT+IAE+FRD+GK+V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFAMAQREVGIAIGEPPAQKGYTPSVFAILPKLMERTGTSDKGSITAFYTVLVDGDDFNE  322
            R+A A RE+++A GE +    Y P+VF+ LP+L+ERTG ++KGSITAFYTVLV+GDD NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PIADTTRGILDGHIVLSRDLANKNHYPSIDVLNSLSRLMNEIASKEDIKIASFARDMLAE  382
            P+AD  R++LDGHIVLSR LA++ HYP+IDVL +LSR+   ++S E+ ++A++ R  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YREAEDLINIGAYASGTNKKIDEAIYYHEHIINFLKQGINEKSSFNETISSLRRIF  438
            Y+E E LI IG Y  G +   D AI    +I  FL+Q+ +E  + +  I  L++I+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

476) fliI in NC_013315


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  291 bits (1090),  Expect = 6e-80, Method: Compositional matrix adjust.
 Identities = 188/416 (46%), Positives = 288/416 (70%), Gaps = 11/416 (2%)

Query  27   GRVKKIIG--LTVEVEGIKAFVGELCVIYNQVNKPVN--CEVVGFKDKEVILMALGELTL  82
            GR++ + +  L   + G+  F+GELC I     KP +   EVVG+++   +L ++   + 
Sbjct  23   GRIQDVSATLLNAWLPGV--FMGELCCI-----KPGEELAEVVGINGSKALLSPFTSTAG  75

Query  83   IAPGCKVISKGIPLSVMCSDNLLGKVLDGLGNPIDNSDAVLGDRYNLNNEPPDPMKRKKI  142
            +  G +V++      V  ++ LLG+V+DG+G P+D  +     + + +  PP +M R+ I
Sbjct  76   LHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPI  135

Query  143  RNIMETGVRAIDAFTTCGEGQRIGIFAGSGVGKSTTLGMIARNAKADVNVIALIGERGRE  202
             + + TG+RAID+ +TCGEGQR+GIF+++GVGKST L+M+   + AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VLDFIDKDLGEEGMKKSVVVCATSDKAPLVRLKGALTATAIAEYFRDQGKKVILMMDSVT  262
            V +FID  L+EE  K+ V+V ATSD+++L R+++ + AT+IAE+FRD+GK+V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFAMAQREVGIAIGEPPAQKGYTPSVFAILPKLMERTGTSDKGSITAFYTVLVDGDDFNE  322
            R+A A RE+++A GE +    Y P+VF+ LP+L+ERTG ++KGSITAFYTVLV+GDD NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PIADTTRGILDGHIVLSRDLANKNHYPSIDVLNSLSRLMNEIASKEDIKIASFARDMLAE  382
            P+AD  R++LDGHIVLSR LA++ HYP+IDVL +LSR+   ++S E+ ++A++ R  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YREAEDLINIGAYASGTNKKIDEAIYYHEHIINFLKQGINEKSSFNETISSLRRIF  438
            Y+E E LI IG Y  G +   D AI    +I  FL+Q+ +E  + +  I  L++I+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

477) fliI in NC_013316


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  291 bits (1090),  Expect = 6e-80, Method: Compositional matrix adjust.
 Identities = 188/416 (46%), Positives = 288/416 (70%), Gaps = 11/416 (2%)

Query  27   GRVKKIIG--LTVEVEGIKAFVGELCVIYNQVNKPVN--CEVVGFKDKEVILMALGELTL  82
            GR++ + +  L   + G+  F+GELC I     KP +   EVVG+++   +L ++   + 
Sbjct  23   GRIQDVSATLLNAWLPGV--FMGELCCI-----KPGEELAEVVGINGSKALLSPFTSTAG  75

Query  83   IAPGCKVISKGIPLSVMCSDNLLGKVLDGLGNPIDNSDAVLGDRYNLNNEPPDPMKRKKI  142
            +  G +V++      V  ++ LLG+V+DG+G P+D  +     + + +  PP +M R+ I
Sbjct  76   LHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPI  135

Query  143  RNIMETGVRAIDAFTTCGEGQRIGIFAGSGVGKSTTLGMIARNAKADVNVIALIGERGRE  202
             + + TG+RAID+ +TCGEGQR+GIF+++GVGKST L+M+   + AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VLDFIDKDLGEEGMKKSVVVCATSDKAPLVRLKGALTATAIAEYFRDQGKKVILMMDSVT  262
            V +FID  L+EE  K+ V+V ATSD+++L R+++ + AT+IAE+FRD+GK+V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFAMAQREVGIAIGEPPAQKGYTPSVFAILPKLMERTGTSDKGSITAFYTVLVDGDDFNE  322
            R+A A RE+++A GE +    Y P+VF+ LP+L+ERTG ++KGSITAFYTVLV+GDD NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PIADTTRGILDGHIVLSRDLANKNHYPSIDVLNSLSRLMNEIASKEDIKIASFARDMLAE  382
            P+AD  R++LDGHIVLSR LA++ HYP+IDVL +LSR+   ++S E+ ++A++ R  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YREAEDLINIGAYASGTNKKIDEAIYYHEHIINFLKQGINEKSSFNETISSLRRIF  438
            Y+E E LI IG Y  G +   D AI    +I  FL+Q+ +E  + +  I  L++I+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

478) SYN_01473 in NC_007759


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  291 bits (1090),  Expect = 6e-80, Method: Compositional matrix adjust.
 Identities = 180/401 (45%), Positives = 273/401 (69%), Gaps = 7/401 (1%)

Query  33   YGRVSEIVGLVVEGQGPAASIGEMCSLLPHDSKPVFAEVVGFKKGKVILMPLEEVQGLGP  92
             GR+ ++ + ++++  P+  +GE+C + P +    +AEVVG++ +K +L P+    GL  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHC  78

Query  93   GCPIKSLGKKAAVKVGAGLLGRVIDGVGNPIDNRG-PIDTEEEYPLYAEPINPLARGRIS  151
            G  + +L ++  V VG +LLGRVIDG G P+D R  P     +Y   A P  ++ R  I+
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPIT  136

Query  152  DPIDFGVKVLNGLFSCGKGQRMGIFAGSGVGKSVLMGMIARNTSADINVIGLIGERGREV  211
            +P+  G++ ++++ +CG GQR+GIF+++GVGKS L++M+     AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  212  REFLEKNLGKEGLARSVVVVAASDMHPLIRMRAAHVATTVSEYFRDQGRDVLLMVDSLTR  271
            REF++  L+ E   R V+VVA+SD  +L R+RA  VATT++E+FRD+G+ V+L+ DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  272  FAMAQREIGLSVGEPPTTKGYTPSVFSLLPKLLERAGKVEGRGSITGLYTILVEGDDFNE  331
            +A A REI+L+ GE + +  Y P+VFS LP+LLER+G  E +GSIT++YT+LVEGDD NE
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGSITAFYTVLVEGDDMNE  315

Query  332  PISDAARSILDGHLYLSRELAAKNHYPAVDVLNSISRVMIDIVSEKHRNMANRILSIIAA  391
            P++D  RS+LDGH+ LSR LA + HYPA+DVL ++SRV   + S+ HR++A  +   +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  392  HKKAEELINIGAYVHGSNAEIDYAIRMIDKVNDFLRQDIHE  432
             +  E LI IG Y +G +++ D AI     +  FLRQ  +E
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

479) Psta_4343 in NC_013720


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  291 bits (1089),  Expect = 7e-80, Method: Compositional matrix adjust.
 Identities = 183/363 (51%), Positives = 262/363 (73%), Gaps = 1/363 (0%)

Query  54   AEVIGFRDNLTLLFPLGDVIGIRQGNRVTLARSTRSVRVGNQLLGRVIDARGRVIDNKPA  113
            AEV+G+ ++ +LL P+    G++ G++V   R  + V VG+ LLGRVID+ GR +D +  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  114  PVLADRVPLDRKPPAATSRPRIDTTFSTGVRAIDGLLTCGVGQRIGVFAGSGVGKSVTLG  173
            P +  +   D  PP+A  R  I   + TG+RAID++ TCG GQR+G+F+++GVGKS  L+
Sbjct  115  PEVC-WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  174  MMAKYSSADVIVIGLIGERGREVNEFLERDLGPTGLARSVCVVATSDEPAIMRVQAASTA  233
            M+ + + AD  V+ LIGERGREV EF++  L+     R V VVATSD PA+ RV+A   A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  234  TAVAEYFRDQGKNVLLMMDSLTRFALAQREIGLAAGEPPTTRGYPPSVFALLPRLVERAG  293
            T++AE+FRD+GK V+L+ DSLTR+A A REI+LAAGE + +  YPP+VF+ LPRL+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  294  RTPQGSITAIYSVLVEGDDVNEPVSDTVRGLLDGHVILSRKLAAQSHYPAIEVLGSISRL  353
               +GSITA+Y+VLVEGDD+NEP++D VR+LLDGH++LSR+LA ++HYPAI+VL+++SR+
Sbjct  294  MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRV  353

Query  354  FTEITTPQQRSAAAIVRELLSAYREHEDLISIGAYRTGANPTVDTAIAMRGEILQFLKQS  413
            F  +T+ ++R  AAI+R  L+ Y+E E LI IG Y+ G +   D AI    +I  FL+QS
Sbjct  354  FPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

Query  414  IDE  416
             DE
Sbjct  414  KDE  416

480) Acid_0343 in NC_008536


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  291 bits (1088),  Expect = 8e-80, Method: Compositional matrix adjust.
 Identities = 186/401 (47%), Positives = 282/401 (71%), Gaps = 9/401 (2%)

Query  19   RWTGQVTQVVGLLIESRGPSVAIGDFCEVKTASGRRIHTQVIGFRDGRVLSMPLEEIDGL  78
            RW G++ +V + L++++ P+V +G++C +K +      ++V+G+ +++ L  P+    GL
Sbjct  21   RW-GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGL  76

Query  79   QLGDPLAARSEDARVEVGPGLLGRVIDGFGKPMDTGPAINA--RESYSLHGTPTNPLDRQ  136
            + G+ + A     +V VG +LLGRVIDGFG+P+D G  +    +  Y  ++ P  ++ RQ
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRELPEVCWKDY--DAMPPPAMVRQ  133

Query  137  HITQPLVTGIRAIDALLPCGKGQRIGIFGGSGVGKSTLLGSMSRNNSADVTVIAMIGERN  196
             ITQPL+TGIRAID++  CG GQR+GIF+++GVGKSTLL+ +     AD  V+ +IGER 
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  197  REVRGFLENELGPEGRKRSVVVCATSERPAPLRVRACFVSLAIAEYFRDQGANVLLVMDS  256
            REVR F++  L+ E RKR V+V ATS+RPA  RVRA FV+ +IAE+FRD+G  V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  257  VTRLAMAQREIGLAAGEPPSQKGYTPSVFNLLPKVLERAGNFGRGSITGFFTVLVEGDDF  316
            +TR A A REI+LAAGE +    Y P+VF+ LP++LER+G   +GSIT+F+TVLVEGDD 
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  317  NEPICDAVRGILDGHFILSRDLGAQGHYPAIDILHSVSRLTSAIATPAQKEaarkiraal  376
            NEP+ D VR++LDGH++LSR L+ +GHYPAID+L ++SR+ + +++  +++ A  +R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  377  aayrDAEDLIQLGAYVSGSNPDLDASIHLRPELLDFLRQDH  417
            A Y++ E LI++G Y  G + D D +I+  P++  FLRQ  
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

481) fliI in NC_009089


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  291 bits (1088),  Expect = 8e-80, Method: Compositional matrix adjust.
 Identities = 187/416 (45%), Positives = 288/416 (70%), Gaps = 11/416 (2%)

Query  27   GRVKKIIG--LTVEVEGIKAFVGELCVIYNQVNKPVN--CEVVGFKDKEVILMALGELTL  82
            GR++ + +  L   + G+  F+GELC I     KP +   EVVG+++   +L ++   + 
Sbjct  23   GRIQDVSATLLNAWLPGV--FMGELCCI-----KPGEELAEVVGINGSKALLSPFTSTAG  75

Query  83   IAPGCKVISNGIPLSVMCSDNLLGKVLDGLGNPIDNSDAVLGDRYNLNNEPPDPMKRKKI  142
            +  G +V++      V  ++ LLG+V+DG+G P+D  +     + + +  PP +M R+ I
Sbjct  76   LHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPI  135

Query  143  RNIMETGVRAIDAFTTCGEGQRIGIFAGSGVGKSTTLGMIARNAKADVNVIALIGERGRE  202
             + + TG+RAID+ +TCGEGQR+GIF+++GVGKST L+M+   + AD NV+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  203  VLDFIDKDLGEEGMKKSVVVCATSDKAPLVRLKGALTATAIAEYFRDQGKKVILMMDSVT  262
            V +FID  L+EE  K+ V+V ATSD+++L R+++ + AT+IAE+FRD+GK+V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  263  RFAMAQREVGVAIGEPPAQKGYTPSVFAMLPKLMERTGTSDKGSITAFYTVLVDGDDFNE  322
            R+A A RE+++A GE +    Y P+VF+ LP+L+ERTG ++KGSITAFYTVLV+GDD NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  323  PIADTTRGILDGHIVLSRDLANKNHYPSIDVLNSLSRLMNEIASKEDIKIASFARDMLAE  382
            P+AD  R++LDGHIVLSR LA++ HYP+IDVL +LSR+   ++S E+ ++A++ R  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  383  YREAEDLINIGAYASGTNKKIDEAIYYHEHIINFLKQGINEKSSFNETISSLRRVF  438
            Y+E E LI IG Y  G +   D AI    +I  FL+Q+ +E  + +  I  L++++
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

482) Sthe_0547 in NC_013523


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  290 bits (1085),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 199/399 (50%), Positives = 277/399 (70%), Gaps = 8/399 (2%)

Query  45   IGDICHIYPSRSEEGRITAEVVGFRDDRLVLVPLAELrgvrsgsrvvarrTSYSVKVGPE  104
            +G++C I P     G   AEVVG+ + + +L P++   G++ G +V+A R    V VG  
Sbjct  42   MGELCCIKP-----GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEA  96

Query  105  LLGRVIDGLGRPIDGQG-PLLCRDETrlsssppdplsrmpIEHPLPTGIRAIDALITCGR  163
            LLGRVIDG+GRP+DG+  P +C+ +    ++P+       I +PL TGIRAID++ TCG 
Sbjct  97   LLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQP--ITQPLMTGIRAIDSVATCGE  154

Query  164  GQRLGIFAGSGVGKSTLLGMICRNADCDVRVVALIGERGREVQEFIERDLGPEGLARSVV  223
            GQR+GIF+++GVGKSTLL+M+C  +D D  V+ LIGERGREV+EFI+  L+ E   R V+
Sbjct  155  GQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVI  214

Query  224  VVSTSDQPALLRLKAAWTATMIAEYFRDRGLNVALLMDSVTRLAMAQREIGLAVGEPPTT  283
            VV+TSD+PAL R++A   AT IAE+FRD G  V LL DS+TR A A REI+LA GE + +
Sbjct  215  VVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVS  274

Query  284  RGYTPSVFALLPRLLERAGNAERGSITAFYTVLVEGDDLTEPVTDAVRGILDGHIYLSRK  343
              Y P+VF+ LPRLLER+G +E+GSITAFYTVLVEGDD+ EP++D VR++LDGHI LSR+
Sbjct  275  GEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  344  LADSGHFPAIEVLGSVSRLMNAIVDERHRRLAAEVRELMAAYEGARDLIEIGAYAAGSNP  403
            LA+ GH+PAI+VL+++SR+   +  + HR+LAA +R  +A Y+    LI IG Y  G + 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  404  VVDRAIAHMPRIREFLRQAPDEPARMDETLNRLASVLEE  442
              D+AI   P I  FLRQ+ DE    +  +++L  +L E
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

483) SOTOND1_00711 in NC_020967


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  290 bits (1087),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 197/403 (49%), Positives = 289/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAEGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T +EGQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

484) fliI in NC_022119


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  290 bits (1087),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 197/403 (49%), Positives = 289/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAEGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T +EGQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

485) CCALI_01244 in NC_021487


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  290 bits (1087),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 210/441 (48%), Positives = 304/441 (69%), Gaps = 20/441 (4%)

Query  18   LERYRQRIARFDPVRQNGKVIQVIGLVIESNGPPAMVGELCDIYYDRANLYDPARPPIK-  76
            ++R R + +  D   + G++ +V + ++++  P   +GELC I           +P    
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI-----------KPGEEL  54

Query  77   AEVVGFRQGRVLLMPIGPMEGIRPGSEVVATRHPLQVMVgegllgrmldglgRPIDGGAP  136
            AEVVG+  ++ LL P+ +  G++ G +V+A R+  QV VGE+LLGR++DG+GRP+DG   
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR--  112

Query  137  LDLPSIV--PVNANPPNPLTRPRIRDIMQVGVRAIDGCLTLGRGQRVGVFAGSGVGKSTL  194
             +LP +     +A PP ++ R  I + +  G+RAID+  T G GQRVG+F+++GVGKSTL
Sbjct  113  -ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  195  LGMIARNTNADVNVIALVGERGREVRDFIEESLGTEGLQRSVVVVATSDQPALVRIKAAF  254
            L+M+    +AD NV+ L+GERGREVR+FI+ +L+ E  +R V+VVATSD+PAL R++A F
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  255  VATAIAEYFRDQGAHVLLMMDSITRLAMAQREIGLAIGEPPATRGYTPSVFAMLPRLLER  314
            VAT+IAE+FRD+G +V+L+ DS+TR A A REI+LA GE + +  Y P+VF+ LPRLLER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  315  AGTAENGSITGLYTVLVEGDDMNEPVADAVRGILDGHIVLTRELAQRGHYPAIDVLQSVS  374
            +G +E+GSIT++YTVLVEGDDMNEP+AD VR++LDGHIVL+R LA+RGHYPAIDVL ++S
Sbjct  292  TGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  375  RVMPQIVSPEHLRAAERLRDTIATYRNAEDLINIGAYVDGSNPKIDRARARIEQANAFLQ  434
            RV P + S EH + A  LR  +A Y++ E LI IG Y  G +   D+A     +  +FL+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  435  QRFDETST---LSETLQILLS  452
            Q  DE      L E L+ +L+
Sbjct  412  QSKDEVCGPELLIEKLHQILT  432

486) EUBELI_00811 in NC_012778


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  290 bits (1086),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 195/421 (47%), Positives = 294/421 (70%), Gaps = 8/421 (1%)

Query  18   YKKLGKVTKIVGLTIESVGPDAKLNDLCRIYSADNSQELYAEVVGFNDSSVLLMPFDVVD  77
            Y + G++  + +  +++  P+  + +LC       ++EL AEVVG+N+S  LL PF    
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELC---CIKPGEEL-AEVVGINGSKALLSPFTSTA  74

Query  78   GIGPGCVVENMEKPLTVKVGDGILGHTLDGLGNPTDGSELELT--DEYPVEAAPPDPMDR  135
            G+  G  V  + +   V VG+++LG+ +DG+G P DG EL      +Y  +A PP +M R
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVR  132

Query  136  EIISQVLPLGVKAVDGLLTVGKGQRIGIFAGSGVGKSTLLGMFARNTKADINVIALIger  195
            + I+Q L  G++A+D++ T G GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  196  grevrefverDLGPEGMARSVLVVATSDKPALIRNKAAKTATAIAEYFRDQGKDVLLMMD  255
            GREVREF++  L+ E   R V+VVATSD+PAL R +A   AT+IAE+FRD+GK V+L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  256  SLTRFSMAQREIGLASGEPPVTRGYPPSVYSEMPKLLERAGMSDKGSITGLYTVLVDGDD  315
            SLTR++ A REI+LA+GE +V+  YPP+V+S +P+LLER+GM++KGSIT++YTVLV+GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  316  FNEPITDTARSILDGHIVLSRKLGQKNHYPAIDVLQSISRCMSQIVDRQHKQMAGRMKNV  375
             NEP++D  RS+LDGHIVLSR+L+++ HYPAIDVL ++SR  + +  ++H+Q+A+ ++  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  376  MATYNEAEDLINIGAYKSGSNKNIDYAIYKIDTVNKFLMQQTDEKFDYDDEISQLSDIFA  435
            +A Y+E E LI IG Y+ G + + D AI     +  FL Q  DE  + +  I +L +I++
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

Query  436  D  436
            +
Sbjct  433  E  433

487) lfiI in NC_009348


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  290 bits (1087),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 193/430 (45%), Positives = 288/430 (67%), Gaps = 9/430 (2%)

Query  15   SFEDVPGFRRYGRLVRVTGLTLEVVGCQLVMGQRCRVDTATGAPLLAEVVGFNRDISYLM  74
             +    G+ R GR+  V++  L+     + MG+ C +  +     LAEVVG+N   + L 
Sbjct  12   KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLS  68

Query  75   PLQPMSGLYAGARVLPIDGEETIQVGEHLLGRVVDGLLQPLDGRPLRDDGERVALFAIPP  134
            P+ + +GL  G +V+++   + + VGE LLGRV+DG+ +PLDGR L +   +    A+PP
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-WKDYDAMPP  127

Query  135  NPLLRTPVREPLDVGIRAINGLNGLLTVGKGQRLGLFAGSGVGKSMLLGMMTRNTTAQIV  194
             +++R P+ +PL  GIRAI+++    T G GQR+G+F+++GVGKS LL+M+     A+  
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVA---TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN  184

Query  195  VVGLIGERGREVREFIEHSLGPEGLARAVVVAAPADQSPLMRLRAAQLCHRIAEYFREQG  254
            V+ LIGERGREVREFI+ +L+ E   R V+V A +D+++L R+RA  +   IAE+FR++G
Sbjct  185  VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNG  244

Query  255  RDVLLLMDSLTRYAQAQREIVLAIGEPPATRGYPPSVFSMLTQLVERAGNGIHQDGSLSA  314
            + V+LL DSLTRYA+A REI LA GE + +  YPP+VFS L +L+ER+G G  + GS++A
Sbjct  245  KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITA  302

Query  315  FYTVLAEGDDQQDPVVDAARAILDGHIVLTRRLAEEGHYPAIDIGASVSRVMPQVVPAEW  374
            FYTVL EGDD ++P+ D  R++LDGHIVL+RRLAE GHYPAID+ A++SRV P V + E 
Sbjct  303  FYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEH  362

Query  375  QTLAVTLRQLWGRYQQVRELLPLGGYQPGADPQMDEAVQRYPAIAAFLQQGIHEETPFVQ  434
            + LA  LR+  + YQ+V  L+ +G YQ G D + D A++ YP I +FL+Q+ +E      
Sbjct  363  RQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPEL  422

Query  435  VMTGLKQVLG  444
            ++  L Q+L 
Sbjct  423  LIEKLHQILT  432

488) fliI in NC_017238


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  290 bits (1087),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 176/417 (43%), Positives = 293/417 (71%), Gaps = 9/417 (2%)

Query  22   GRVQKIKGLLVESLGPQCAVGDLCLIDQRNNKKVCAEVLGFNGPYVSLMAYEGFSGIEVG  81
            GR+Q + + L+++  P   +G+LC I   ++    AEV+G+NG+   L ++ + +G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  82   NKVYSLNKGLEINLSDELLGRVIDSLGRPIDNKGSFLNNKYKELIFEKINP--ISRSIFE  139
            ++V +L +  ++ +++ LLGRVID++GRP+D +  + +   K+  ++ + P  + R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKD--YDAMPPPAMVRQPIT  136

Query  140  EQILTGVKVLDGFLPVAKGQRVGIFSGAGVGKSTLLGMIAKNSNADVNVIAFIGERGREL  199
            + ++TG++ +D+    + GQRVGIFS++GVGKSTLL+M+ + ++AD NV+ +IGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  NEFIEHELGEERLKKSVLVVSTSDESPISRYKGAYVATMIAEYFRDQGKDVALLFDSITR  259
             EFI+  L+EE  K+ V+VV+TSD +++ R ++ +VAT IAE+FRD+GK V LL DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  FANAKREMSLSLGEPPVAKGYPPSVFVEIPILLERSGFNGNGGSVTGFYTVLVEGDDFAE  319
            +A A RE++L+ GE +V+  YPP+VF  +P LLER+G  G+ GS+T+FYTVLVEGDD  E
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDDMNE  315

Query  320  PVADNIKAVLDGHVILDRDLFDRGIYPSINILSSTSRSIHRIMSLEKQKLIMKARNLLSV  379
            P+AD+++++LDGH++L R L +RG YP+I++L++ SR +  + S E ++L    R  L++
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YKDYEDLIRTGIYLKGSNKDVDFAISKYPKIIDFISQGINETFDFENLEDEIRKILS  436
            Y++ E LIR G Y +G + D D AI  YP I  F+ Q+ +E  + E L + +++IL+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

489) fliI in NC_020829


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  290 bits (1085),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 190/365 (53%), Positives = 263/365 (73%), Gaps = 3/365 (0%)

Query  67   AEVMGFSGSKIYLMPVGSLAGIAPGARVVPLPDSGRLPMGMSMLGRVLDGVGRALDGKGG  126
            AEV+G++GSK  L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MRAEDWVPMEGPIINPLARDPIHEPMDVGIRSINSLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   ++    ++ R+PI +P+  GIR+I+S+ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTKADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAQYC  246
            M+     AD  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPRLVERAG  306
            T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LPRL+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGEKGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             GEK  GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVTSPEHLRDAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIQRFPIMRQFLR  426
            RV P VTS EH + A  +++  + YQ+   LI +G Y  G D +TD AI+ +P +  FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QALDE  431
            Q+ DE
Sbjct  412  QSKDE  416

490) fliI in NC_020209


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  290 bits (1084),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 185/365 (51%), Positives = 263/365 (73%), Gaps = 3/365 (0%)

Query  67   AEVMGFSGSKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRPLDGKGG  126
            AEV+G++GSK +L P  S AG+  G +V++L    ++P+G ++LGRV+DG GRPLDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPTINPLNRNPISQPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI+QPL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEADIIVVGLIGERGREVKEFIEHSLGLEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +AD  V+ LIGERGREV+EFI+ +L+ E  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPSVVTPEHMARAQQFKQLWSRYQQSRDLISVGAYVAGGDRETDLAIALQPQLVTYLR  426
            RV P V + EH   A  +++  + YQ+   LI +G Y  G D +TD AI   P++ T+LR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QGLND  431
            Q+ ++
Sbjct  412  QSKDE  416

491) GU3_14055 in NC_016745


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  290 bits (1085),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 198/416 (48%), Positives = 294/416 (71%), Gaps = 14/416 (3%)

Query  26   GRLLRVTGNLLEVSGCRLVLGQRCCIDTDGGGELEAEVVALDREQALLLPLTSASGLYTG  85
            GR+  V++ LL+     + +G+ CCI    G EL AEVV+++  +ALL P+TS++GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKP--GEEL-AEVVGINGSKALLSPFTSTAGLHCG  79

Query  86   ARVRPLAGEDRLAVSAALLGRIVDGLLRPLDGRPPAQGQPVPW---QCAAPNPLLRRRVS  142
             +V +L   ++++V+ ALLGR++DG+ RPLDGR  ++   V W   +  +P +++R+ ++
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE---VCWKDYDAMPPPAMVRQPIT  136

Query  143  EPLDVGVRAINGLLTPGKGQRLGLFAGPGVGKSVLLGMMARYTRADVVVVGLIGERGREV  202
            +PL  G+RAI+++ T G GQR+G+F++PGVGKS LL+M+     AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  203  REFIDDCLGAQGRARSVVIAAPADQSPLMRVRAAESCHRVAEHFRDQGQDVLLLMDSLTR  262
            REFID  L+ + R R V++ A +D+++L RVRA      +AE FRD+G+ V+LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  263  YVQARREIGLAVGEPPVARGYPPSAFSALTGLVERAGNGEQPAGSLTAFYTVLAEGDDQQ  322
            Y +A REI+LA GE +V+  YPP+ FSAL  L+ER+G GE+  GS+TAFYTVL EGDD +
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMN  314

Query  323  DPVADAARAILDGHVVLSRQLAEQGHYPAIDIGASISRVMSKVAGPDHLARAVQCKRWFG  382
            +P+AD  R++LDGH+VLSR+LAE+GHYPAID+ A++SRV + V++ +H   A   +R+++
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  383  LYQQVRELLPLGGIQSGKSQETDEAIARYPALAAFLQQGELE---PVSLAETLQQL  435
            LYQ+V  L+ +G  Q G   +TD AI  YP + +FL+Q+  E   P  L E L+Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

492) Cwoe_0041 in NC_013739


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  290 bits (1085),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 187/399 (47%), Positives = 276/399 (70%), Gaps = 10/399 (2%)

Query  35   RHGRVSDLIGLVVEATGLQAEVGEICMVNGDRGHPPVPAEVVGFRGARTLLMPLGEMHGi  94
            R GR+ D+ + +++A      +GE+C ++ +       AEVVG+ G+++LL P+    G+
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL----AEVVGINGSKALLSPFTSTAGL  76

Query  95   gpatttratgtpfriRVGQDLLGRVIDGLGKPIDG--MPRATNGHPRSTNASPPDPLDRP  152
              +    A     ++ VG+ LLGRVIDG+G+P+DG  +P       +  +A PP ++ R 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCW---KDYDAMPPPAMVRQ  133

Query  153  RIDQRVDLGVRALDALVPCGRGQRLGIFAGSGVGKSSLLGMIARSTTADVNVIALVGERG  212
             I Q +  G+RA+D++  CG GQR+GIF+++GVGKS+LL+M+  +  AD NV+ L+GERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  213  REVKEFVERDLGDAL-SRSVVVVATSDQPALVRIKAAFTATAIAEHFRDQGNDVMLMMDS  271
            REV+EF++  L++    R V+VVATSD+PAL R++A F AT+IAE FRD+G+ V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  272  VTRFAMAQREVGLAIGEPPATRGYTPSVFAQLPRLLERSGTARTGSITGLYTVLVDGDDM  331
            +TR+A A RE++LA GE + +  Y P+VF+ LPRLLER+G +  GSIT++YTVLV+GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  332  NEPIADAVRSILDGHVVLTRELAHASHYPAIDVLQSVSRLVGEIVSPEVRAAGQAVRQLM  391
            NEP+AD VRS+LDGH+VL+R LA+ +HYPAIDVL ++SR+   + S E R  +  +R+ +
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  392  ASYKEKEDLIAIGAYQGGTDPTVDAAIALRPQLDRFLKQ  430
            A Y+E E LI IG YQ G D   D AI   P++  FL+Q
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

493) fliI in NC_018645


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  290 bits (1084),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 184/398 (47%), Positives = 276/398 (70%), Gaps = 9/398 (2%)

Query  28   GKVSQVIGLIAEGDSLGLGIGALCSIVNSNGLEVKAEVVGFKKEKALFMPYGDIRGISLG  87
            G++ +V + + ++   G+ +G LC I  ++ L   AEVVG++  KAL+ P+    G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  88   SRIIPISASSVVGVSDQLLGRVVDGMGIPIDGKG--EIKYTQEYGLYGKPISPLEREQIK  145
             +++++     V V++ LLGRV+DG G P+DG+   E+   ++Y+  + P +++ R+ I 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV-CWKDYD--AMPPPAMVRQPIT  136

Query  146  EPLDVGVAAINSMITLGKGQRVAIMAGSGVGKSVLMGMMTKHTSADVIVIGLIGERGREV  205
            +PL  G+ AI+S+ T G GQRV+I +++GVGKS L++M+ +   AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  206  KDFIEDTLGQEGIKRAVVVAATSDSPPLVRMRGAYLATTIAEYFRDRGKNVLLMVDSITR  265
            ++FI+ TL++E  KR V+V ATSD P+L R+R+ ++ATTIAE+FRD GK V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  266  YAMSSRDVGLAAGEPPTSKGYTPSFFVQIPILLERAGNIKNGGSITGIYTVLVEGDDLND  325
            YA ++R+++LAAGE + S  Y P+ F  +P LLER+G + + GSIT++YTVLVEGDD+N+
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMNE  315

Query  326  PVGDTVRSIVDGHIVLSRDLANRGHYPAIDVLASVSRVMRDVSRKDHVVVRDKAVNVLSS  385
            P++D VRS++DGHIVLSR LA+RGHYPAIDVLA++SRV   V+  +H  +       L+ 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  386  YRSAEDMITIGAYVDGSDPDIDEAKRLMPGIIQFLRQD  423
            Y+  E +I IG Y  G D D D A    P+I  FLRQ 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

494) sctN in NC_016798


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLESVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

495) CTO_0726 in NC_017437


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLESVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

496) A363_00718 in NC_020966


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLESVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

497) A5291_00717 in NC_020939


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLESVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

498) sctN in NC_007429


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLESVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

499) sctN in NC_012686


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLESVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

500) sctN in NC_012687


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLESVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

501) A7249_00716 in NC_020944


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLESVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

502) fliI in NC_022110


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1083),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIVGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

503) BN356_0371 in NC_019391


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 198/404 (50%), Positives = 289/404 (72%), Gaps = 12/404 (2%)

Query  25   GRITEVVGMLIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPS  84
            GRI +V + L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIPTGMPLYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHRE  142
             +V    M+L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+
Sbjct  80   QQV----MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQ  133

Query  143  KLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGER  202
             +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGER
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGER  192

Query  203  GREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMD  262
            GREVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  263  SVTRFARALREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDD  322
            S+TR+ARA RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  323  MNEPVADEVKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREV  382
            MNEP+ADEV+S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  383  LAKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            LA Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

504) B600_0044 in NC_018621


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 198/404 (50%), Positives = 289/404 (72%), Gaps = 12/404 (2%)

Query  25   GRITEVVGMLIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPS  84
            GRI +V + L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIPTGMPLYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHRE  142
             +V    M+L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+
Sbjct  80   QQV----MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQ  133

Query  143  KLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGER  202
             +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGER
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGER  192

Query  203  GREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMD  262
            GREVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  263  SVTRFARALREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDD  322
            S+TR+ARA RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  323  MNEPVADEVKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREV  382
            MNEP+ADEV+S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  383  LAKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            LA Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

505) G5O_0045 in NC_017287


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 198/404 (50%), Positives = 289/404 (72%), Gaps = 12/404 (2%)

Query  25   GRITEVVGMLIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPS  84
            GRI +V + L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIPTGMPLYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHRE  142
             +V    M+L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+
Sbjct  80   QQV----MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQ  133

Query  143  KLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGER  202
             +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGER
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGER  192

Query  203  GREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMD  262
            GREVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  263  SVTRFARALREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDD  322
            S+TR+ARA RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  323  MNEPVADEVKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREV  382
            MNEP+ADEV+S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  383  LAKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            LA Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

506) AO9_00175 in NC_020248


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 198/404 (50%), Positives = 289/404 (72%), Gaps = 12/404 (2%)

Query  25   GRITEVVGMLIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPS  84
            GRI +V + L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIPTGMPLYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHRE  142
             +V    M+L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+
Sbjct  80   QQV----MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQ  133

Query  143  KLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGER  202
             +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGER
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGER  192

Query  203  GREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMD  262
            GREVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  263  SVTRFARALREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDD  322
            S+TR+ARA RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  323  MNEPVADEVKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREV  382
            MNEP+ADEV+S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  383  LAKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            LA Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

507) B712_0041 in NC_018626


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 198/404 (50%), Positives = 289/404 (72%), Gaps = 12/404 (2%)

Query  25   GRITEVVGMLIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPA  84
            GRI +V + L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIPTGMPLYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHRE  142
             +V    M+L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+
Sbjct  80   QQV----MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQ  133

Query  143  KLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGER  202
             +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGER
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGER  192

Query  203  GREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMD  262
            GREVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  263  SVTRFARALREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDD  322
            S+TR+ARA RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  323  MNEPVADEVKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREV  382
            MNEP+ADEV+S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  383  LAKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            LA Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

508) Cpsi_0431 in NC_014796


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 198/404 (50%), Positives = 289/404 (72%), Gaps = 12/404 (2%)

Query  25   GRITEVVGMLIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPS  84
            GRI +V + L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIPTGMPLYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHRE  142
             +V    M+L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+
Sbjct  80   QQV----MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQ  133

Query  143  KLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGER  202
             +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGER
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGER  192

Query  203  GREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMD  262
            GREVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  263  SVTRFARALREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDD  322
            S+TR+ARA RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  323  MNEPVADEVKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREV  382
            MNEP+ADEV+S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  383  LAKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            LA Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

509) sctN in NC_010287


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR +IVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

510) sctN in NC_017434


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

511) sctN in NC_017436


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

512) SOTOND5_00709 in NC_020943


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

513) SOTOND6_00709 in NC_020968


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

514) yscN in NC_000117


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

515) E11023_03530 in NC_017431


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

516) E150_03560 in NC_017439


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

517) BOUR_00713 in NC_020971


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

518) SOTONE8_00714 in NC_020942


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

519) sctN in NC_017952


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

520) sctN in NC_017951


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

521) sctN in NC_017953


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

522) G11074_03530 in NC_017440


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

523) G11222_03550 in NC_017430


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

524) CTG9301_03540 in NC_017432


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

525) G9768_03530 in NC_017429


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

526) SOTONG1_00709 in NC_020941


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

527) SOTONIA1_00712 in NC_020970


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

528) sctN in NC_020511


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

529) sctN in NC_020512


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

530) CTJTET1_03570 in NC_021892


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

531) SOTONK1_00709 in NC_020965


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

532) L1115_00704 in NC_020929


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR +IVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

533) L1224_00704 in NC_020973


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR +IVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

534) L1440_00707 in NC_020937


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR +IVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

535) L225667R_00706 in NC_020930


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR +IVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

536) CTLFINAL_00205 in NC_021052


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR +IVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

537) CTLINITIAL_00205 in NC_021050


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR +IVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

538) L2B795_00704 in NC_020938


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

539) L2B8200_00703 in NC_020945


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

540) L2BAMS1_00703 in NC_020933


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

541) L2BAMS2_00703 in NC_020934


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

542) L2BAMS3_00703 in NC_020977


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

543) L2BAMS4_00704 in NC_020978


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

544) L2BAMS5_00704 in NC_020936


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

545) L2BCAN1_00705 in NC_020935


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

546) L2BCAN2_00704 in NC_020932


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

547) L2BCV204_00703 in NC_020976


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

548) sctN in NC_010280


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

549) L2BUCH2_00703 in NC_020931


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

550) L3404_00704 in NC_020974


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR +IVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

551) CTRC69_03565 in NC_021895


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

552) CTRC342_03595 in NC_021890


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

553) CTRC852_03610 in NC_021888


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

554) CTRC943_03525 in NC_021896


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

555) CTRC953_03525 in NC_021889


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR +IVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

556) CTRC966_03535 in NC_021898


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

557) CTRC971_03545 in NC_021899


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR +IVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

558) CTRC122_03570 in NC_021891


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

559) CTRC55_03545 in NC_021893


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR +IVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

560) CTRC3_03575 in NC_021897


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR +IVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

561) CTRC46_03545 in NC_021887


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR +IVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

562) sctN in NC_017441


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

563) SOTONE4_00708 in NC_020969


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

564) SOTONF3_00708 in NC_020964


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

565) SOTONIA3_00712 in NC_020940


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

566) L2BLST_00703 in NC_020975


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

567) L11322_00704 in NC_020972


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

568) fliI in NC_022106


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

569) fliI in NC_022107


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

570) fliI in NC_022108


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

571) fliI in NC_022109


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

572) fliI in NC_022117


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

573) fliI in NC_022118


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

574) fliI in NC_022120


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

575) fliI in NC_022121


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1082),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 196/403 (49%), Positives = 288/403 (72%), Gaps = 10/403 (2%)

Query  25   GRIIEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVMATGLPLHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAK  143
             +VMA    L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  
Sbjct  80   QQVMA----LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERG  203
            +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

576) CP0039 in NC_002179


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 287/403 (72%), Gaps = 10/403 (2%)

Query  25   GRITEVVGMLIKAVVPNVRVGEVCLVKRNGMEPLVTEVVGFTQSFAFLSPLGELSGVSPS  84
            GRI +V + L++A +P V +GE+C +K       ++EVVG+  S A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIPTGLPLHIRAgngllgrvlnglgEPIDVETKGPLQNVDQTFPIFRA-PPDPLHRAK  143
             +V    ++L+ R    +   +L  + + ++    G  +  +     + A PP ++ R  
Sbjct  80   QQV----MALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRQILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERG  203
            + Q L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREIDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

577) yscN in NC_000922


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 287/403 (72%), Gaps = 10/403 (2%)

Query  25   GRITEVVGMLIKAVVPNVRVGEVCLVKRNGMEPLVTEVVGFTQSFAFLSPLGELSGVSPS  84
            GRI +V + L++A +P V +GE+C +K       ++EVVG+  S A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIPTGLPLHIRAgngllgrvlnglgEPIDVETKGPLQNVDQTFPIFRA-PPDPLHRAK  143
             +V    ++L+ R    +   +L  + + ++    G  +  +     + A PP ++ R  
Sbjct  80   QQV----MALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRQILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERG  203
            + Q L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREIDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

578) yscN in NC_002491


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 287/403 (72%), Gaps = 10/403 (2%)

Query  25   GRITEVVGMLIKAVVPNVRVGEVCLVKRNGMEPLVTEVVGFTQSFAFLSPLGELSGVSPS  84
            GRI +V + L++A +P V +GE+C +K       ++EVVG+  S A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIPTGLPLHIRAgngllgrvlnglgEPIDVETKGPLQNVDQTFPIFRA-PPDPLHRAK  143
             +V    ++L+ R    +   +L  + + ++    G  +  +     + A PP ++ R  
Sbjct  80   QQV----MALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRQILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERG  203
            + Q L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREIDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

579) CPK_ORF00111 in NC_017285


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 287/403 (72%), Gaps = 10/403 (2%)

Query  25   GRITEVVGMLIKAVVPNVRVGEVCLVKRNGMEPLVTEVVGFTQSFAFLSPLGELSGVSPS  84
            GRI +V + L++A +P V +GE+C +K       ++EVVG+  S A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIPTGLPLHIRAgngllgrvlnglgEPIDVETKGPLQNVDQTFPIFRA-PPDPLHRAK  143
             +V    ++L+ R    +   +L  + + ++    G  +  +     + A PP ++ R  
Sbjct  80   QQV----MALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRQILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERG  203
            + Q L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

580) yopN in NC_005043


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 195/403 (49%), Positives = 287/403 (72%), Gaps = 10/403 (2%)

Query  25   GRITEVVGMLIKAVVPNVRVGEVCLVKRNGMEPLVTEVVGFTQSFAFLSPLGELSGVSPS  84
            GRI +V + L++A +P V +GE+C +K       ++EVVG+  S A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIPTGLPLHIRAgngllgrvlnglgEPIDVETKGPLQNVDQTFPIFRA-PPDPLHRAK  143
             +V    ++L+ R    +   +L  + + ++    G  +  +     + A PP ++ R  
Sbjct  80   QQV----MALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQP  134

Query  144  LRQILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERG  203
            + Q L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERG
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERG  193

Query  204  REVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS  263
            REVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  264  VTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDM  323
            +TR+ARA RE++LAAGE +  + Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  324  NEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVL  383
            NEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  384  AKYKANEMLIRIGEYRRGSDREIDFAIDHIDKLNRFLKQDIHE  426
            A Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

581) Noca_0756 in NC_008699


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  288 bits (1080),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 182/376 (49%), Positives = 267/376 (72%), Gaps = 3/376 (0%)

Query  59   VASGDGMLTCLPLGDTTGLRVGDHVVNHGEGLRIPVGEALRGRVLDGLGRPMDDGPALDD  118
            + ++ ++L+  P+  T+GL+ G++V+      ++PVGEAL GRV+DG+GRP+D G  L +
Sbjct  60   INGSKALLS--PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRELPE  116

Query  119  LPTVVVDNLPPAALSRPRIDQQLGLGVRAMDALISCGRGQRLGIMAGSGVGKSSLLSMIA  178
            +     D +PP+A+ R  I Q L  G+RA+D++ +CG GQR+GI +++GVGKS+LL+M+ 
Sbjct  117  VCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC  176

Query  179  RGTDAEISVIALIGERGREVREFLENDLGPAGLRRSIVVVATSDEPPVVRLRAAFVATRI  238
             + DA+ +V+ LIGERGREVREF++  L+    +R ++VVATSD P++ R+RA FVAT I
Sbjct  177  NAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTI  236

Query  239  AEWFRDSGRHVVLMMDSLTRVALAQREIGLSAGEPPATRGFPPSVFALLPRLLERAGTSP  298
            AE FRD+G++VVL+ DSLTR A A REI+L+AGE + +  +PP+VF+ LPRLLER+G + 
Sbjct  237  AEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE  296

Query  299  EGSITGLYTVLVEGDDLQDPIGDSARSILDGHVVLSRDLATSGHFPSIDVLESISRVASA  358
             GSIT++YTVLVEGDD+++P++D  RS+LDGH+VLSR LA  GH+P+IDVL ++SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  359  IIEPSGRADGIRLRRLLAAYRSVRELVEIGAYVAGSdadaddalalMPRINDFLRQDMSD  418
            +     R  +  LRR LA Y+ V  L+ IG Y  G D+D+D A+   P I  FLRQ   +
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

Query  419  VTPTADTWSALHELVT  434
            V         LH+++T
Sbjct  417  VCGPELLIEKLHQILT  432

582) Ser39006_2915 in NC_022268


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  288 bits (1080),  Expect = 4e-79, Method: Compositional matrix adjust.
 Identities = 204/405 (51%), Positives = 292/405 (73%), Gaps = 11/405 (2%)

Query  36   GRIVGISGILLESSLPRARIGDLCLVKRNDATQILAEIVGFSAENTFLSALGALDGIAQG  95
            GRI ++S+ LL++ LP   +G+LC +K  +    LAE+VG+++ +++LS++ +  G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  96   AVVTPLYQPHCVHISDALFGSVLDGFGRPLEEGGASAFVEPGDISVHPTPVLGDAPPPTE  155
              V +L + H V +++AL+G V+DGFGRPL+        E  ++       +  +PP+  
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR------ELPEVCWKDYDAM--PPPAMV  131

Query  156  RPRISQPLPTGIRAIDGLLTIGRGQRVGIFAGAGCGKTTLLAELARNTPCDAIVFGLIGE  215
            R  I+QPL TGIRAID++ T G GQRVGIF+++G GK+TLLA L      D+ V+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  216  RGRELREFLDHELDEELRRRTVLICATSDRSSMeraraaftataiaeafRSEGKQVLLIL  275
            RGRE+REF+D  L EE R+R V++ ATSDR+++ER RA F AT+IAE FR +GK+V+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  276  DSLTRFARAQREIGLALGEPQGRGGLPPSVYTLLPRLVERAGQTRQGAITALYSVLIEQD  335
            DSLTR+ARA REI+LA GE    G  PP+V++ LPRL+ER+G   +G+ITA+Y+VL+E D
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  336  SMNDPVADEVRSLIDGHIVLSRHLAERNHYPAIDVLMSLSRIMSNIVEKTHTRDASTVRR  395
             MN+P+ADEVRSL+DGHIVLSR+LAER HYPAIDVL +LSR+ + +    H + A+ +RR
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  396  LMAAYKQVEMLIRLGEYQPGHDTFTDAAVNANDEINHFLQQSMRE  440
             +A Y++VE+LIR+GEYQ G DT TD A+++  +I  FL+QS  E
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

583) sctN in NC_003361


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  288 bits (1079),  Expect = 4e-79, Method: Compositional matrix adjust.
 Identities = 199/404 (50%), Positives = 289/404 (72%), Gaps = 12/404 (2%)

Query  25   GRITEVVGMLIKAVVPNVRVGEVCLVKRQGMEPLVTEVVGFTQSFAFLSPLGELSGVSPS  84
            GRI +V + L++A +P V +GE+C +K  G E  ++EVVG+  S A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIPTGLPLYIRAgngllgrvlnglgEPIDTELKGP-LVDV-NETYPVFRAPPDPLHRE  142
             +V    ++L  R    +   +L  + + ++  L G  L +V    Y     PP ++ R+
Sbjct  80   QQV----MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQ  133

Query  143  KLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGER  202
             +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGER
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGER  192

Query  203  GREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMD  262
            GREVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  263  SVTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDD  322
            S+TR+ARA RE++LAAGE +  + Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  323  MNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREV  382
            MNEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  383  LAKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            LA Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

584) fliI in NC_016894


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  288 bits (1079),  Expect = 4e-79, Method: Compositional matrix adjust.
 Identities = 178/409 (44%), Positives = 280/409 (69%), Gaps = 7/409 (1%)

Query  13   AETYQYFGKIEKVVGMMIESVGPECSIGDLCKIFDQNADRFILAEVVGFRGNKVLLMPYE  72
            ++ Y   G+I+ V + ++++  P   +G+LC I     +   LAEVVG+ G+K LL P+ 
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI-KPGEE---LAEVVGINGSKALLSPFT  71

Query  73   EPEGISFGNIVEPTGSSLRIGVSQDMIGRVVNAMGEPIDGGG-PIANTMPYEIQSAGANP  131
               G+  G+ V +     ++ V++ ++GRV+++ G P+DG   P      Y+  ++ A  
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA--  129

Query  132  FSRPCIDDILEFGVKAIDGLLTIGKGQRMGIFAGSGVGKSTLMGMIARNVKTQVNVIALV  191
              R  I + L  G++AID++ T G GQR+GIF+++GVGKSTL++M+     ++ NV+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  192  GERGREVRQFLENDLGPEGLERSVIVVATSDQPPMQRMKCALTATTIAEYFKDQGNDVLL  251
            GERGREVR+F++  L+ E   R VIVVATSD+P+++R++  + ATTIAE+F+D+G+ V+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  252  MMDSLTRFAMAQREIGLATGEPPVARGYTPSIYAMMPKLLERSGNFETGSITGIYTVLVE  311
            + DSLTR+A A REI+LA+GE +V+  Y P++++ +P+LLER+G  E GSIT++YTVLVE
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  312  GDDMNEPVADTVRGIIDGHIVLSRKIAARNHYPAIDVLNSVSRLMSNIVSKEQMEAASSM  371
            GDDMNEP+AD VR+++DGHIVLSR++A R HYPAIDVL ++SR+ + + S E+ + A+ +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  372  RNMMSVYDTNYDLISIGAYKSGSNPSLDIAIKKIGGINKYLQQKVDEKC  420
            R  +++Y+    LI IG Y+ G +   D AI    +I  +L+Q  DE C
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

585) fliI in NC_007005


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  288 bits (1078),  Expect = 5e-79, Method: Compositional matrix adjust.
 Identities = 191/381 (51%), Positives = 264/381 (70%), Gaps = 9/381 (2%)

Query  48   MGSRCVVINDDSHHPVEVEAEVMGFSGGKVFLMPVGSVAGIAPGARVVPLADTGRLPMGM  107
            MG  C +       P E  AEV+G++G+K +L P  S AG+  G +V++L    ++P+G 
Sbjct  42   MGELCCI------KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGE  95

Query  108  SMLGRVLDGAGRPLDGRSPIKAEDWVPMDGPTINPLKRDPISQPLDVGIRCINGLLTVGR  167
            ++LGRV+DG GRPLDGR  +    W   D+    ++ R+PI+QPL  GIR I+++ T G 
Sbjct  96   ALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGE  154

Query  168  GQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVV  227
            GQR+G+F++ GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+EE  KR V+
Sbjct  155  GQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVI  214

Query  228  VASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPAT  287
            V + +D ++L R+RA    T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +
Sbjct  215  VVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVS  274

Query  288  KGYPPSVFARLPKLVERAGNAEKGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLS  347
              YPP+VF+ LP+L+ER+G +EK  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLS
Sbjct  275  GEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLS  332

Query  348  RRLAEEGHYPAIDIEASISRVMPAVVSPEHMARAQHFKQLWSRYQQTRDLISVGAYVAGG  407
            RRLAE GHYPAID+ A++SRV P V S EH   A  +++  + YQ+   LI +G Y  G 
Sbjct  333  RRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGV  392

Query  408  DRETDMAIALHPVLVRYQRQA  428
            D +TD AI   P +  + RQ+
Sbjct  393  DTDTDKAIDTYPDICTFLRQS  413

586) fliI in NC_013939


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  288 bits (1078),  Expect = 5e-79, Method: Compositional matrix adjust.
 Identities = 177/367 (49%), Positives = 259/367 (71%), Gaps = 2/367 (0%)

Query  54   LAEIVGFKDDRVILMPYAESEGIAPGSIVRNVAYGNVVKVSEELLGRVLDGLGRPIDSNR  113
            LAE+VG+++ + +L P++ + G+  G  V  +   + V V+E LLGRV+DG+GRP+D+ R
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-R  112

Query  114  VITNYELKSVYTEPPSPLEREIIKDAIHTGVKAIDALITIGKGQRVGIFAGSGVGKSVLL  173
             + +   K   + PP+++ R+ I +++ TG++AID++ T G GQRVGIF+++GVGKS LL
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  174  GMIARNSSADVNVIALIGERGREVREFIERDLGEEGLKKSVVVVATSDQSPLVRKMGAFV  233
            +M+   + AD NV+ LIGERGREVREFI+  L+EE  K+ V+VVATSD+++L R  + FV
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  234  ATTIAEYFRSLGKDVMFMMDSVTRFAMAQREIGLTVGEPPTTKGYTPSVFALLPKLLERA  293
            ATTIAE+FR  GK V+++ DS+TR+A A REI+L+ GE + +  Y P+VF+ LP+LLER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  294  GTKKGEGTITGLYTVLVEGDDLNDPIADSVRSIIDGHIVLDRNLAAKNHFPAIDVMMSAS  353
            G     G+IT++YTVLVEGDD+N+P+AD VRS++DGHIVL R LA + H+PAIDV+ + S
Sbjct  293  G-MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  354  RLMKEIVDERHFEAAGRLRDLIATYREAEDLINIGAYVKGSNKKIDEAILKIDLINNFLK  413
            R+   +  + H + A+ LR  +A Y+E E LI IG Y +G +   D AI     I  FL+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  414  QKIDETS  420
            Q  DE  
Sbjct  412  QSKDEVC  418

587) Dvul_2988 in NC_008741


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  288 bits (1077),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 203/392 (52%), Positives = 287/392 (74%), Gaps = 7/392 (1%)

Query  32   TIIRAVVPGVKVGELCLLRNPWDDWNLRAEVVGFVKHVALLTPLGNLQGISPATEVIPTG  91
            T++ A +PGV +GELC ++      +  AEVVG+    ALL+P+ +  G+  + +V++  
Sbjct  31   TLLNAWLPGVFMGELCCIKPG----EELAEVVGINGSKALLSPFTSTAGLHCGQQVMALR  86

Query  92   EILSIPVgedllgrvldglgdpidggpplKPRTRYPVYAD-PPNPMTRRIIDRPISLGLR  150
                +PVGE LLGRV+DG+G P+DG     P      Y   PP +M R+ I +P+  G+R
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIR  144

Query  151  VLDGVLTCGEGQRMGIFAAAGGGKSTLLSSIIKGCSADVCVLALIGERGREVREFIEHDL  210
             +D+V TCGEGQR+GIF+A+G GKSTLL+ + ++  AD  VL LIGERGREVREFI+  L
Sbjct  145  AIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTL  204

Query  211  GPEGRKKAVLVVSTSDRSSMERLKAAYTATAIAEYFRDQRRSVLLMMDSVTRFGRAQREI  270
            + E RK+ V+VV+TSDR+++ER++A + AT+IAE+FRD+ + V+L+ DS+TR++RA REI
Sbjct  205  SEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREI  264

Query  271  GLAAGEPPTRRGFPPSVFSTLPRLMERAGNSDRGSITALYTVLVEGDDMTEPIADETRSI  330
            +LAAGE +    +PP+VFS+LPRL+ER+G +++GSITA+YTVLVEGDDM EP+ADE RS+
Sbjct  265  ALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSL  324

Query  331  LDGHIVLSRKLAAANHYPAIDVQASVSRVMNAIVGKEHKGAAQKLRKILAKYAEVELLVQ  390
            LDGHIVLSR+LA   HYPAIDV A++SRV   + + EH+  A  LR+ LA Y EVELL++
Sbjct  325  LDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIR  384

Query  391  IGEYKKGSDKEADDALARVGAVNAFLRQGLDE  422
            IGEY++G D ++D A+     + +FLRQ+ DE
Sbjct  385  IGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

588) DVUA0119 in NC_005863


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  288 bits (1077),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 203/392 (52%), Positives = 287/392 (74%), Gaps = 7/392 (1%)

Query  32   TIIRAVVPGVKVGELCLLRNPWDDWNLRAEVVGFVKHVALLTPLGNLQGISPATEVIPTG  91
            T++ A +PGV +GELC ++      +  AEVVG+    ALL+P+ +  G+  + +V++  
Sbjct  31   TLLNAWLPGVFMGELCCIKPG----EELAEVVGINGSKALLSPFTSTAGLHCGQQVMALR  86

Query  92   EILSIPVgedllgrvldglgdpidggpplKPRTRYPVYAD-PPNPMTRRIIDRPISLGLR  150
                +PVGE LLGRV+DG+G P+DG     P      Y   PP +M R+ I +P+  G+R
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIR  144

Query  151  VLDGVLTCGEGQRMGIFAAAGGGKSTLLSSIIKGCSADVCVLALIGERGREVREFIEHDL  210
             +D+V TCGEGQR+GIF+A+G GKSTLL+ + ++  AD  VL LIGERGREVREFI+  L
Sbjct  145  AIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTL  204

Query  211  GPEGRKKAVLVVSTSDRSSMERLKAAYTATAIAEYFRDQRRSVLLMMDSVTRFGRAQREI  270
            + E RK+ V+VV+TSDR+++ER++A + AT+IAE+FRD+ + V+L+ DS+TR++RA REI
Sbjct  205  SEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREI  264

Query  271  GLAAGEPPTRRGFPPSVFSTLPRLMERAGNSDRGSITALYTVLVEGDDMTEPIADETRSI  330
            +LAAGE +    +PP+VFS+LPRL+ER+G +++GSITA+YTVLVEGDDM EP+ADE RS+
Sbjct  265  ALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSL  324

Query  331  LDGHIVLSRKLAAANHYPAIDVQASVSRVMNAIVGKEHKGAAQKLRKILAKYAEVELLVQ  390
            LDGHIVLSR+LA   HYPAIDV A++SRV   + + EH+  A  LR+ LA Y EVELL++
Sbjct  325  LDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIR  384

Query  391  IGEYKKGSDKEADDALARVGAVNAFLRQGLDE  422
            IGEY++G D ++D A+     + +FLRQ+ DE
Sbjct  385  IGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

589) Deval_3220 in NC_017311


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  288 bits (1077),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 203/392 (52%), Positives = 287/392 (74%), Gaps = 7/392 (1%)

Query  32   TIIRAVVPGVKVGELCLLRNPWDDWNLRAEVVGFVKHVALLTPLGNLQGISPATEVIPTG  91
            T++ A +PGV +GELC ++      +  AEVVG+    ALL+P+ +  G+  + +V++  
Sbjct  31   TLLNAWLPGVFMGELCCIKPG----EELAEVVGINGSKALLSPFTSTAGLHCGQQVMALR  86

Query  92   EILSIPVgedllgrvldglgdpidggpplKPRTRYPVYAD-PPNPMTRRIIDRPISLGLR  150
                +PVGE LLGRV+DG+G P+DG     P      Y   PP +M R+ I +P+  G+R
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIR  144

Query  151  VLDGVLTCGEGQRMGIFAAAGGGKSTLLSSIIKGCSADVCVLALIGERGREVREFIEHDL  210
             +D+V TCGEGQR+GIF+A+G GKSTLL+ + ++  AD  VL LIGERGREVREFI+  L
Sbjct  145  AIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTL  204

Query  211  GPEGRKKAVLVVSTSDRSSMERLKAAYTATAIAEYFRDQRRSVLLMMDSVTRFGRAQREI  270
            + E RK+ V+VV+TSDR+++ER++A + AT+IAE+FRD+ + V+L+ DS+TR++RA REI
Sbjct  205  SEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREI  264

Query  271  GLAAGEPPTRRGFPPSVFSTLPRLMERAGNSDRGSITALYTVLVEGDDMTEPIADETRSI  330
            +LAAGE +    +PP+VFS+LPRL+ER+G +++GSITA+YTVLVEGDDM EP+ADE RS+
Sbjct  265  ALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSL  324

Query  331  LDGHIVLSRKLAAANHYPAIDVQASVSRVMNAIVGKEHKGAAQKLRKILAKYAEVELLVQ  390
            LDGHIVLSR+LA   HYPAIDV A++SRV   + + EH+  A  LR+ LA Y EVELL++
Sbjct  325  LDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIR  384

Query  391  IGEYKKGSDKEADDALARVGAVNAFLRQGLDE  422
            IGEY++G D ++D A+     + +FLRQ+ DE
Sbjct  385  IGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

590) fliI in NC_019670


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  288 bits (1077),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 189/384 (50%), Positives = 268/384 (70%), Gaps = 9/384 (2%)

Query  48   MGSRCMVINGDSYHPVQVEAEVMGFSGSKVFLMPVGSVAGIAPGARVVPLADNGRLPMGM  107
            MG  C +  G+        AEV+G++GSK +L P  S AG+  G +V++L    ++P+G 
Sbjct  42   MGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGE  95

Query  108  SMLGRVLDGAGRALDGKGGMKAEDWVPMDGPTINPLKREPISEPLDVGIRCINGMLTVGR  167
            ++LGRV+DG GR+LDG+  +    W   D+    ++ R+PI++PL  GIR I+++ T G 
Sbjct  96   ALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGE  154

Query  168  GQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVV  227
            GQR+G+F++ GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+EE  KR V+
Sbjct  155  GQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVI  214

Query  228  VASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPAT  287
            V + +D ++L R+RA    T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +
Sbjct  215  VVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVS  274

Query  288  KGYPPSVFAKLPKLVERAGNAEKGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLS  347
              YPP+VF+ LP+L+ER+G +EK  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLS
Sbjct  275  GEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLS  332

Query  348  RRLAEEGHYPAIDIEASISRVMPAVVSPEHMVRAQYFKQLWSRYQQSRDLISVGAYVAGG  407
            RRLAE GHYPAID+ A++SRV P V S EH   A  +++  + YQ+   LI +G Y  G 
Sbjct  333  RRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGV  392

Query  408  DRETDLAISLQPQLVKYLRQGLND  431
            D +TD AI   P++  +LRQ+ ++
Sbjct  393  DTDTDKAIDTYPDICTFLRQSKDE  416

591) hrcN in NC_004547


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  288 bits (1077),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 206/422 (49%), Positives = 302/422 (72%), Gaps = 15/422 (3%)

Query  19   QRQHLAGYAPVE---KKGRVMAVSGILLECSLPQARIGDLCWVARQDDSQMMAEIVGFSP  75
            QR +L  Y+P +   + GR+  VS+ LL+  LP   +G+LC +   ++   +AE+VG++ 
Sbjct  7    QRLRLK-YPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGING  62

Query  76   DNTFLSALGALDGIAQGATVTPLYQPHRIQVSERLLGSVLDGFGRALEDGGESAFVEPGQ  135
             +++LS++ +  G+  G  V +L + H++ V+E LLG V+DGFGR+L++       E  +
Sbjct  63   SKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR------ELPE  116

Query  136  VTGRTQPVLGDAPPPTSRPRISQPLPTGLRAVDGLLTIGQGQRVGIFAGAGCGKTTLLAE  195
            V  +    +  +PP+  R  I+QPL TG+RA+D++ T G+GQRVGIF+++G GK+TLLA 
Sbjct  117  VCWKDYDAM--PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAM  174

Query  196  LARNTPCDTIVFGLIGERGRELREFLDHELDDELRSRTVLVCSTSDRSSMeraraaftat  255
            L      D+ V+ LIGERGRE+REF+D  L +E R R V+V +TSDR+++ER RA F AT
Sbjct  175  LCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVAT  234

Query  256  aiaeayraeGRQVLLILDSLTRFARAQREIGLALGEPQGRGGLPPSVYTLLPRLVERAGQ  315
            +IAE +R +G++V+L+ DSLTR+ARA REI+LA GE    G  PP+V++ LPRL+ER+G 
Sbjct  235  TIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM  294

Query  316  TEDGAITALYSVLIEQDSMNDPVADEVRSLIDGHIVLARRLAEQGHYPAIDVLASLSRTM  375
             E G+ITA+Y+VL+E D MN+P+ADEVRSL+DGHIVL+RRLAE+GHYPAIDVLA+LSR  
Sbjct  295  GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVF  354

Query  376  SNVVDTDHTRNAGGVRRLMAAYKQVEMLIRLGEYQPGHDELTDSAVNAHSEITQFLRQSM  435
            + V   +H + A+ +RR +A Y++VE+LIR+GEYQ G D  TD A+++ ++I  FLRQS 
Sbjct  355  PVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

Query  436  RE  437
             E
Sbjct  415  DE  416

592) fliI in NC_021745


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  287 bits (1074),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 199/408 (49%), Positives = 305/408 (75%), Gaps = 9/408 (2%)

Query  22   RFGKVVEVTGTLLRVGGVDVRLGELCTLTEADGTVMQEGEVVGFSEHFALVAPFSGVTGL  81
            R G++ +V++TLL     +V +GELC +  ++    + +EVVG++   AL++PF++ +GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  82   SRSTRVVPSGRALSVGIgpgllgrvldglgrpADGGPPLDVV--EYVPVFANAPDPMTRR  139
              + +V++  R   V +G +LLGRV+DG+GRP DG    +V   +Y ++   +P +M R+
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQ  133

Query  140  LVEHPLATGVRVIDGLATLAEGQRMGIFAPAGVGKSTLMGMFARGTECDVNVIVLIGERG  199
             + +PL TG+R ID++AT +EGQR+GIF+++GVGKSTL++M+  + + D NV+VLIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  200  REVREFIEQILGEEGMRRSVVVCATSDRSAVERAKAAYVGTAVAEYFRDQGLRVLLMMDS  259
            REVREFI+  L+EE  +R V+V ATSDR+A+ER +A +V+T++AE+FRD+G RV+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  260  LTRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMSAAGSITALYTVLAEDESG  319
            LTR+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GM+  GSITA+YTVL E++  
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  320  NDPVAEEVRGILDGHLILSRDIAARNRYPAIDILNSLSRVMTQVMPRDHCDAAGRMRQLL  379
            N+P+A+EVR++LDGH++LSR +A R +YPAID+L +LSRV   V +++H + A+ +R+ L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  380  AKYNEVETLLQMGEYKEGSDPVADAAVQWNDWMESFLRQRTDEWCSPD  427
            A Y+EVE L+++GEY+ G D  +D A++    + +FLRQ  DE C+P+
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

593) hrcN in NC_003296


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  287 bits (1074),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 199/408 (49%), Positives = 305/408 (75%), Gaps = 9/408 (2%)

Query  22   RFGKVVEVTGTLLRVGGVDVRLGELCTLTEADGTVMQEGEVVGFSEHFALVAPFSGVTGL  81
            R G++ +V++TLL     +V +GELC +  ++    + +EVVG++   AL++PF++ +GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  82   SRSTRVVPSGRALSVGIgpgllgrvldglgrpADGGPPLDVV--EYVPVFANAPDPMTRR  139
              + +V++  R   V +G +LLGRV+DG+GRP DG    +V   +Y ++   +P +M R+
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQ  133

Query  140  LVEHPLATGVRVIDGLATLAEGQRMGIFAPAGVGKSTLMGMFARGTECDVNVIVLIGERG  199
             + +PL TG+R ID++AT +EGQR+GIF+++GVGKSTL++M+  + + D NV+VLIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  200  REVREFIEQILGEEGMRRSVVVCATSDRSAVERAKAAYVGTAVAEYFRDQGLRVLLMMDS  259
            REVREFI+  L+EE  +R V+V ATSDR+A+ER +A +V+T++AE+FRD+G RV+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  260  LTRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMSAAGSITALYTVLAEDESG  319
            LTR+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GM+  GSITA+YTVL E++  
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  320  NDPVAEEVRGILDGHLILSRDIAARNRYPAIDILNSLSRVMTQVMPRDHCDAAGRMRQLL  379
            N+P+A+EVR++LDGH++LSR +A R +YPAID+L +LSRV   V +++H + A+ +R+ L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  380  AKYNEVETLLQMGEYKEGSDPVADAAVQWNDWMESFLRQRTDEWCSPD  427
            A Y+EVE L+++GEY+ G D  +D A++    + +FLRQ  DE C+P+
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

594) Sde_2185 in NC_007912


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  287 bits (1073),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 178/381 (47%), Positives = 264/381 (70%), Gaps = 6/381 (1%)

Query  67   AEVVGFNGDKTYLMPVQKVEGLQPGARVVPLDAHQHMAIGEHLRGRIINGIGQPLDGKGP  126
            AEVVG+NG K+ L P     GL+ G +V++L  ++++++GE L GR+I+G+G+PLDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  LPGKSNVDMAPSAINPLSRHPIDAPLDVGVRAINGLLTVGRGQRIGLFAGSGVGKSVLLG  186
            LP     D  + +  ++ R+PI  PL  G+RAI+++ T G GQR+G+F+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTTADIVVVGLIGERGREVKEFIDQILGDAGMSRAVVIASPADDAPLMRLRAAELC  246
            M+     AD  V+ LIGERGREV+EFID  L++    R V++ + +D ++L R+RA  + 
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRVAEFFRDQGLNCLLLMDSLTRYAQAQREISLAIGEPPATKGYPPSVFSKIPELVERAG  306
            T +AEFFRD+G   +LL DSLTRYA+A REI+LA GE + +  YPP+VFS +P L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NADKGGGSITAFYTVLTEGDDLQDPIADSARAILDGHIVLSRDLAEEGIYPAIDISASVS  366
             ++K  GSITAFYTVL EGDD+++P+AD  R++LDGHIVLSR LAE G YPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPSIVTPDHLQKAQKFKALLSRYRANKDLISIGAYTPGTDPNIDGAIERYPHLNKYIC  426
            RV P + + +H Q A  ++  L+ Y+    LI IG Y  G D + D AI+ YP++  ++ 
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QGMKEASG---LVPSMEQLFN  444
            Q+  E  G   L+  ++Q++ 
Sbjct  412  QSKDEVCGPELLIEKLHQILT  432

595) fliI in NC_017911


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  287 bits (1076),  Expect = 7e-79, Method: Compositional matrix adjust.
 Identities = 185/365 (51%), Positives = 263/365 (73%), Gaps = 3/365 (0%)

Query  67   AEVMGFSGSKIFLMPVGSLAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++GSK +L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPTINPLKRNPISVPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI+ PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEADIIVVGLIGERGREVKEFIEHSLGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +AD  V+ LIGERGREV+EFI+ +L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPAVVTPEHMARAQQFKQLWSRYQQSRDLISVGAYVAGGDRDTDLAIALQPQLVTYLR  426
            RV P V + EH   A  +++  + YQ+   LI +G Y  G D DTD AI   P++ T+LR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QGLND  431
            Q+ ++
Sbjct  412  QSKDE  416

596) fliI in NC_004578


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  287 bits (1076),  Expect = 8e-79, Method: Compositional matrix adjust.
 Identities = 188/368 (52%), Positives = 260/368 (71%), Gaps = 3/368 (0%)

Query  61   HPVEVEAEVMGFSGGKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRP  120
             P E  AEV+G++G+K +L P  S AG+  G +V++L    ++P+G ++LGRV+DG GRP
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRP  108

Query  121  LDGRSPIKAEDWVPMDGPTINPLKRDPISQPLDVGIRCINGLLTVGRGQRLGLFAGTGVG  180
            LDGR  +    W   D+    ++ R+PI+QPL  GIR I+++ T G GQR+G+F++ GVG
Sbjct  109  LDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  181  KSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRL  240
            KS LL+M+    +AD  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  241  RAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFARLPK  300
            RA    T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  301  LVERAGNAEKGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAID  360
            L+ER+G +EK  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID
Sbjct  288  LLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  361  IEASISRVMPAVVSPEHMARAQHFKQLWSRYQQTRDLISVGAYVAGGDRETDMAIALHPV  420
            + A++SRV P V S EH   A  +++  + YQ+   LI +G Y  G D +TD AI   P 
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  421  LVRYQRQA  428
            +  + RQ+
Sbjct  406  ICTFLRQS  413

597) fliI in NC_012660


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  287 bits (1076),  Expect = 8e-79, Method: Compositional matrix adjust.
 Identities = 184/365 (51%), Positives = 263/365 (73%), Gaps = 3/365 (0%)

Query  67   AEVMGFSGNKIFLMPVGSLAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++G+K +L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPTINPLNRNPISVPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI+ PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEADIIVVGLIGERGREVKEFIEHSLGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +AD  V+ LIGERGREV+EFI+ +L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPAVVTPEHMARAQHFKQLWSRYQQSRDLISVGAYVAGGDRDTDLAIALQPQLVTYLR  426
            RV P V + EH   A  +++  + YQ+   LI +G Y  G D DTD AI   P++ T+LR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QGLND  431
            Q+ ++
Sbjct  412  QSKDE  416

598) fliI in NC_018177


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  287 bits (1076),  Expect = 8e-79, Method: Compositional matrix adjust.
 Identities = 184/371 (50%), Positives = 267/371 (72%), Gaps = 3/371 (0%)

Query  61   HPSQVEAEVMGFSGGKLFLMPVGSLAGIAPGARVVPLADTGRLPMGTSMLGRVIDGAGRA  120
             P++  AEV+G++G+K +L P  S AG+  G +V++L    ++P+G ++LGRVIDG GR+
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRP  108

Query  121  LDGKGGMKAEDWVPMDGPVINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVG  180
            LDG+  +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVG
Sbjct  109  LDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  181  KSVLLGMMTRFTEADIIVVGLIGERGREVKEFIENILGEESIKRSVVVASPADDAPLMRL  240
            KS LL+M+    +AD  V+ LIGERGREV+EFI+  L+EE+ KR V+V + +D ++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  241  RAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPS  300
            RA    T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  301  LVERAGNAEAGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHIVLSRRLAEEGHYPAID  360
            L+ER+G +E   GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID
Sbjct  288  LLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  361  IEASISRVMPQVVSAEHVRNSQRFKQLWSRYQQSRDLISVGAYVPGGDAETDLAIARQAE  420
            + A++SRV P V S EH + +  +++  + YQ+   LI +G Y  G D++TD AI   ++
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  421  MVGYLRQGLNE  431
            +  +LRQ+ +E
Sbjct  406  ICTFLRQSKDE  416

599) CAB036 in NC_004552


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  287 bits (1076),  Expect = 8e-79, Method: Compositional matrix adjust.
 Identities = 197/404 (49%), Positives = 289/404 (72%), Gaps = 12/404 (2%)

Query  25   GRITEVVGMLIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPS  84
            GRI +V + L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIPTGLPLYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHRE  142
             +V    ++L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+
Sbjct  80   QQV----MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQ  133

Query  143  KLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGER  202
             +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGER
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGER  192

Query  203  GREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMD  262
            GREVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  263  SVTRFARALREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDD  322
            S+TR+ARA RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  323  MNEPVADEVKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREV  382
            MNEP+ADEV+S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  383  LAKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  426
            LA Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

600) DaAHT2_1185 in NC_014216


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  287 bits (1075),  Expect = 9e-79, Method: Compositional matrix adjust.
 Identities = 183/400 (46%), Positives = 278/400 (70%), Gaps = 6/400 (1%)

Query  22   GRVSQVIGMVIESEGPGIPVGSICEIDVFRGQAKVPAEVVGFREGKVLLMPLGEMRGVEP  81
            GR+ +V + ++++  PG+ +G +C I      +   AEVVG+  +K LL P+    G++ 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK----PGEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  82   GGAIRLVEGAARVPVSQDLLGRIIDGLGQPMDGNGPLPGESFYPLYAEPLNPMTRERITD  141
            G  +  +    +VPV++ LLGR+IDG+G+P+DG   LP        A P  +M R+ IT+
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQ  137

Query  142  PVDVGVRAINGLLTLGKGQRIGIMAGSGVGKSTLMGMIARHTAADISVIALIGERGRELK  201
            P+  G+RAI+++ T G GQR+GI +++GVGKSTL++M+     AD +V+ LIGERGRE++
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  202  DFIERDLGPEGLARSVVVVATSDQPPLVRMRGAYLAMAVAEYFRDLGRDVVLMMDSVTRY  261
            +FI+  L+ E   R V+VVATSD+P+L R+R+ ++A ++AE+FRD G+ VVL+ DS+TRY
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  262  AMSGREVGLAIGEPPTSRGYTPSVFGQLPKLLERAGTCQGKGSITGIFTVLVEGDDMNEP  321
            A ++RE++LA GE + S  Y P+VF+ LP+LLER+G    KGSIT+++TVLVEGDDMNEP
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDDMNEP  316

Query  322  IADAVRSIVDGHIVLSRDLASQGHYPAIEVMGSVSRCMSDVVPEEQVRAAHRFLEVLALY  381
            +AD VRS++DGHIVLSR LA +GHYPAI+V++++SR  + V ++E+ + A  +   LALY
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  RRSEDLINIGAYAKGSNPKIDGAIAMIDKLNGYLRQAVND  421
            +  E LI IG Y +G +   D AI     +  +LRQ+ ++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

601) hrcN in NC_014310


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1072),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 204/408 (50%), Positives = 303/408 (75%), Gaps = 9/408 (2%)

Query  22   RFGKVVEVTGTLLRVGGVDVRLGELCTLTEPDGTVMQEGEVVGFSEHFALVAPFGGVTGL  81
            R G++ +V++TLL     +V +GELC +   +    + +EVVG++   AL++PF + +GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  82   SRSTRVVPSGRALSVGIgpgllgrvldglgrpADGGPPLEVV--DYVPVFANAPDPMTRR  139
              + +V++  R   V +G +LLGRV+DG+GRP DG    EV   DY ++   +P +M R+
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQ  133

Query  140  LVEQPLATGVRVIDGLATLAEGQRMGIFAPAGVGKSTLMGMFARGTDCDVNVIVLIGERG  199
             + QPL TG+R ID++AT +EGQR+GIF+++GVGKSTL++M+  + D D NV+VLIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  200  REVREFIEQILGEEGMRRSVVVCATSDRSAVERAKAAYVGTAVAEYFRDQGLRVLLMMDS  259
            REVREFI+  L+EE  +R V+V ATSDR+A+ER +A +V+T++AE+FRD+G RV+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  260  LTRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMSAAGSITALYTVLAEDESG  319
            LTR+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GM+  GSITA+YTVL E++  
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  320  NDPVAEEVRGILDGHLILSRDIAARNRYPAIDILNSLSRVMTQVMPREHCDAAGRMRQLL  379
            N+P+A+EVR++LDGH++LSR +A R +YPAID+L +LSRV   V ++EH + A+ +R+ L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  380  AKYNEVETLLQMGEYKEGSDPVADAAVQWNDWMESFLRQRTDEWCSPD  427
            A Y+EVE L+++GEY+ G D  +D A++    + +FLRQ  DE C+P+
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

602) Krad_1653 in NC_009664


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1072),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 170/330 (52%), Positives = 236/330 (72%), Gaps = 1/330 (0%)

Query  104  DVPVGPALLGRVVDALGNPLDGGPPLHTAPRGPLHATPPPAMTRGRVDAPLSLGVRALDT  163
            +VPVG ALLGRV+D++G PLDG   L    +   +A PPPAM R  +  PL  G+RA+D+
Sbjct  90   QVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDS  148

Query  164  LVPAGRGQRFGIFAGSGVGKSSLLSMIARGTSADVSVLALVGERGREVREFLEDDLGPEG  223
            +   G GQR GIF+++GVGKS+LL+M+  +  AD +VL L+GERGREVREF++  L+ E 
Sbjct  149  VATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEET  208

Query  224  LARSVVVIATSDEAPVLRLRASLTATTVAESFRDMGADCVLMMDSLTRVAMAQREIGLSV  283
              R V+V+ATSD +++ R+RA + ATT+AE FRD G   VL+ DSLTR A A REI+L+ 
Sbjct  209  RKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAA  268

Query  284  GEPPATRGYPPSVFALMPRLLERAGPGVTGSITGIYTVLVDGDDHNEPIADNARSILDGH  343
            GE + +  YPP+VF+ +PRLLER+G G  GSIT++YTVLV+GDD NEP+AD+ RS+LDGH
Sbjct  269  GETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGH  328

Query  344  VVLDRRLATAGHFPTIDVLESVSRVAGRVTTPEQKSAATALRRVMAAHRDAKELIDVGAY  403
            +VL RRLA  GH+P+IDVL ++SRV   VT+ E++  A+ LRR +A  ++   LI +G Y
Sbjct  329  IVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEY  388

Query  404  QPGANPEVDAAVAQLPAINAFLRQDIHDIT  433
            Q G + + D A+   P I +FLRQ  +++ 
Sbjct  389  QRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

603) rhcN in NC_018294


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1070),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 202/403 (51%), Positives = 295/403 (74%), Gaps = 5/403 (1%)

Query  36   RGRITRAVGTLIHAVLPEARIGELCLLQDTRTGLSLEAEVIGLLDNGVLLTPIGGLAGLS  95
            +GRI    +TL++A LP   +GELC     + G  L AEV+G+ ++  LL+P+ + AGL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELC---CIKPGEEL-AEVVGINGSKALLSPFTSTAGLH  77

Query  96   SRAEVVSTGRMREVPIGPDLLGRVIDSRCRPLDGKGEVKTTEVRPLHGRAPNPMTRRMVE  155
               +V++  R ++VP+G  LLGRVID+  RPLDG+ E+     +  ++ +P +M R+ + 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPIT  136

Query  156  RPFPLGVRALDGLLTCGEGQRIGIYGEPGGGKSTLISQIVKGAAADVVIVALIgergrev  215
            +P+  G+RA+D++ TCGEGQR+GI++ PG GKSTL++ + +++ AD  ++ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  216  refverHLGEEGLRRAIVVVETSDRSATERAQCAPMATALAEYFREQGLRVALLLDSLTR  275
            REF++  L+EE  +R ++VV TSDR+A ER +   +AT++AE+FR++G RV LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  276  FCRAMREIGLAAGEPPTRRGFPPSVFAALPGLLERAGMGERGSITAFYTVLVEGDGTGDP  335
            + RA REI+LAAGE +    +PP+VF+ALP LLER+GMGE+GSITAFYTVLVEGD+  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  336  IAEESRGIVDGHIVLSRALAARSHFPAIDVLQSRSRVMDAVVSETHRKAASFFRDLLARY  395
            +A+E R+++DGHIVLSR LA R+H+PAIDVL + SRV   V S+ HR+ A+++R  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  396  AECEFLINVGEYKQGGDPLTDRAVASIGELKEFLRQSEDEVSD  438
             E E+LI +GEY++G D  TD+A+ +  ++  FLRQS DEV +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

604) BC1001_6046 in NC_015137


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1071),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 200/407 (50%), Positives = 299/407 (74%), Gaps = 5/407 (1%)

Query  52   ARSGKVLEVIGTLVKVAGLDVTLGELCELRAANGKLLQHAEVIGFTRDVALLSPFSRLAD  111
             R G++ +V +TL++    +V +GELC +++++    + AEV+G+    ALLSPF+  A+
Sbjct  20   CRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAG  75

Query  112  ISRSTRVVGLGRSLTVPVGDSLLGRVIDSLGEPIDGLGPLGATEQRPVFANPPSPMTRRM  171
            +  + +V++L R   VPVG++LLGRVID++G P+DG   L     +   A PP++M R+ 
Sbjct  76   LHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQP  134

Query  172  IDTPLATGVRVVDGMMTLAEGQRMGIFAPAGVGKSTLLGMFARGAQCDVTVIALIgergr  231
            I  PL TG+R +D++ T +EGQR+GIF+++GVGKSTLL+M+  +++ D  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  232  evrefveLILGAEGMARSVVVCATSDRSSIERAKAAYVATAIAEHFRDRGQRVLLMMDSL  291
            EVREF+++ L+ E   R V+V ATSDR+++ER +A +VAT+IAE FRD G+RV+L+ DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  292  TRFARAQREIGLAAGEPPARRGFPPSIFAELPRLLERAGMGEHGSITAMYTVLAEDESGN  351
            TR+ARA REI+LAAGE +    +PP++F+ LPRLLER+GMGE GSITA YTVL E++  N
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  352  DPIAEEVRGIVDGHMILSREIAAKNQYPAIDVLASLSRVMPQVMTPDYVraaarlrella  411
            +P+A+EVR+++DGH++LSR +A + +YPAIDVLA+LSRV P V + +  + AA LR  LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  412  KHREVEMLLQIGEYQPGGNPLADEAIRKIDAIRAFFNQATHELAAPQ  458
              +EVE+L++IGEYQ G +  +D AI     I +F+ Q+ +E+ +P+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

605) Q7C_2350 in NC_017856


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1071),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 179/365 (50%), Positives = 264/365 (73%), Gaps = 3/365 (0%)

Query  70   AEVVGFHDDVLYLMPTGDIRGLVPNAKVRPIQNDSLIPVGEALLGRVVDGAGKPLDGKGA  129
            AEVVG+++    L P     GL    +V +++    +PVGEALLGRV+DG G+PLDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  130  IKVKDRVPLHGQPVNPLSRAPVRQHLDVGVRAINALLSVGRGQRMGLFAGSGVGKSVLLG  189
              V  +   ++ P  ++ R P+ Q L  G+RAI+++ + G GQR+G+F+++GVGKS LL+
Sbjct  115  PEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  190  MMTRFTEADVIVVGLIGERGREVKEFIEDILGEQGLKRAVVVASPADHSPLMRLHGAMLA  249
            M+    +AD  V+ LIGERGREV+EFI+  L+E+  KR V+V + +D+++L R+++  +A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  250  TSIAEYFRDQGKQVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFSLLPQLVERAG  309
            T+IAE+FRD+GK+V+LL DSLTRYA+A REIALA GE + +  YPP+VFS LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  310  NAGEGQGGITAIYTVLVEGDDQQDPVADSARAILDGHIVLSRQLAESGVYPAIDVEASIS  369
             +   +G+ITA+YTVLVEGDD ++P+AD  R++LDGHIVLSR+LAE G YPAIDV A++S
Sbjct  294  MG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  370  RVMPQVTSREQLQQAQLFKQIYATYRQNQDLINIGAYSAGSDPQIDHAIEMYPKLRKLLK  429
            RV P VTS+E+ Q A ++++  A Y++ + LI IG Y  G D + D AI+ YP +  +L+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  430  QDMHQ  434
            Q  ++
Sbjct  412  QSKDE  416

606) fliI in NC_005773


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1070),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 190/381 (50%), Positives = 263/381 (70%), Gaps = 9/381 (2%)

Query  48   MGSRCVVINDDSHHPVEVEAEVMGFSGGKVFLMPVGSVAGIAPGARVVPLADTGRLPMGM  107
            MG  C +       P E  AEV+G++G+K +L P  S AG+  G +V++L    ++P+G 
Sbjct  42   MGELCCI------KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGE  95

Query  108  SMLGRVLDGAGRPLDGRSPIKAEDWVPMDGPTINPLKRDPISQPLDVGIRCINGLLTVGR  167
            ++LGRV+DG GRPLDGR  +    W   D+    ++ R+PI+QPL  GIR I+++ T G 
Sbjct  96   ALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGE  154

Query  168  GQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVV  227
            GQR+G+F++ GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+EE  KR V+
Sbjct  155  GQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVI  214

Query  228  VASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPAT  287
            V + +D ++L R+RA    T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +
Sbjct  215  VVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVS  274

Query  288  KGYPPSVFARLPKLVERAGNAEAGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLS  347
              YPP+VF+ LP+L+ER+G +E   GSITAFYTVL EGDD ++P+AD  R++LDGHIVLS
Sbjct  275  GEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLS  332

Query  348  RRLAEEGHYPAIDIEASISRVMPAVVSPEHMARAQHFKQLWSRYQQTRDLISVGAYVAGG  407
            RRLAE GHYPAID+ A++SRV P V S EH   A  +++  + YQ+   LI +G Y  G 
Sbjct  333  RRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGV  392

Query  408  DRETDMAIALHPVLVRYQRQG  428
            D +TD AI   P +  + RQ+
Sbjct  393  DTDTDKAIDTYPDICTFLRQS  413

607) BUPH_00148 in NC_018672


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1071),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 200/412 (49%), Positives = 301/412 (74%), Gaps = 5/412 (1%)

Query  30   STASIARSGKVLEVIGTLVKVAGLDVTLGELCELRAANGKLLQHAEVIGFTRDVALLSPF  89
            +  +  R G++ +V +TL++    +V +GELC +++++    + AEV+G+    ALLSPF
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPF  70

Query  90   SRLADISRSTRVVGLGRSLTVPVGDSLLGRVIDSLGEPIDGLGPLGATEQRPVFANPPSP  149
            +  A++  + +V++L R   VPVG++LLGRVID++G P+DG   L     +   A PP++
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPA  129

Query  150  MSRRMIDTPLATGVRVVDGMMTLAEGQRMGIFAPAGVGKSTLLGMFARGAQCDVTVIALI  209
            M R+ I  PL TG+R +D++ T +EGQR+GIF+++GVGKSTLL+M+  +++ D  V+ LI
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  210  gergrevrefveLILGAEGMARSVVVCATSDRSSIERAKAAYVATAIAEHFRDRGQRVLL  269
            GERGREVREF+++ L+ E   R V+V ATSDR+++ER +A +VAT+IAE FRD G+RV+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  270  MMDSLTRFARAQREIGLAAGEPPARRGFPPSIFAELPRLLERAGMGEHGSITAMYTVLAE  329
            + DSLTR+ARA REI+LAAGE +    +PP++F+ LPRLLER+GMGE GSITA YTVL E
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  330  DESGNDPIAEEVRGIVDGHMILSREIAAKNQYPAIDVLASLSRVMPQVMTPDYVraaarl  389
            ++  N+P+A+EVR+++DGH++LSR +A + +YPAIDVLA+LSRV P V + +  + AA L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  390  rellaKHREVEMLLQIGEYQPGGNPLADEAIRKIDAIRAFFNQATHELAAPQ  441
            R  LA  +EVE+L++IGEYQ G +  +D AI     I +F+ Q+ +E+ +P+
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

608) fliI in NC_009434


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1071),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 188/389 (49%), Positives = 272/389 (70%), Gaps = 3/389 (0%)

Query  66   SYHPTEVEAEVMGFSSGKLYLMPVGSLAGIAPGARVVPLVNTGRLPMGMSMLGRVLDGAG  125
               P E  AEV+G++++K  L P  S AG+  G +V++L    ++P+G ++LGRV+DG G
Sbjct  47   CIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFG  106

Query  126  RALDGKGGMRAEDWVPMDGPVINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTG  185
            R+LDG+  +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ G
Sbjct  107  RPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIENILGEESIKRSVVVASPADDAPLM  245
            VGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+EE+ KR V+V + +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RLRAAQYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKL  305
            R+RA    T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PSLVERAGNAERGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHIVLSRRLAEEGHYPA  365
            P L+ER+G +E+  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRVMPQVVSAEHVRASQRFKQLWSRYQQSRDLISVGAYVPGGDPETDMAIARQ  425
            ID+ A++SRV P V S EH + +  +++  + YQ+   LI +G Y  G D +TD AI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  AEMVSYLRQGLDESEGLSQSAAQLAAVFT  454
            +++ ++LRQ+ DE  G      +L  ++T
Sbjct  404  PDICTFLRQSKDEVCGPELLIEKLHQILT  432

609) fliI in NC_017093


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1069),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 170/327 (52%), Positives = 242/327 (75%), Gaps = 0/327 (0%)

Query  91   RVAVGPDLRGRILDGLGRPMDGGPPLRGTMVEIDTAPPAAMDRQLVDKPMSLGVRVLDTL  150
            +V+VG  L GR++DG+GRP+DG         + D+ PP+AM RQ + +P+  G+R +D++
Sbjct  90   QVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSV  149

Query  151  VPCGRGQRIGIFAGSGVGKSTLMSMITRGTSAELNVVALVGERGREVREFIEHDLGEEGL  210
              CG GQR+GIF+++GVGKSTL++M+  +  A+ NV+ L+GERGREVREFI+  L+EE  
Sbjct  150  ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETR  209

Query  211  ARSVVVIATSDTPPLVRLRAGSVATRIAEYYRDEGADVLLMMDSVTRAAMAQREVGLSVG  270
             R V+V+ATSD P+L R+RA  VAT IAE++RD+G  V+L+ DS+TR A A RE++L+ G
Sbjct  210  KRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAG  269

Query  271  EPPATRGYPPSVFAMLAALLERAGPGARGSITGLYTVLVEGDDHNEPIADAARSILDGHI  330
            E + +  YPP+VF+ L+ LLER+G G +GSIT++YTVLVEGDD NEP+AD  RS+LDGHI
Sbjct  270  ETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  331  VLDRKLATAGHFPAIQALDSISRVANKITSREQRADATELRRLMAAHREVRELVEIGAYV  390
            VL R+LA  GH+PAI+ L ++SRV   +TS+E+R  A+ LRR +A  +EV  L+ IG Y 
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  391  QGTNPDADRANAAWPQISAFLRQDLDE  417
            +G + D+D+A  + P+I +FLRQ  DE
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKDE  416

610) BC1003_3632 in NC_014540


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1070),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 201/410 (50%), Positives = 301/410 (74%), Gaps = 7/410 (1%)

Query  44   SIARTGKVLEVIGTLVKVAGLDVTLGELCELRAANGALLQHAEVIGFTRDVALLSPFSRL  103
            +  R G++ +V +TL++    +V +GELC +++++    + AEV+G+    ALLSPF+  
Sbjct  18   GYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTST  73

Query  104  ADISRSTRVVGLGRSLTVPVGDTLLGRVIDSLGEPIDGLGPLEATEQRPVFAN-PPSPMS  162
            A++  + +V++L R   VPVG++LLGRVID++G P+DG    E    +  +   PP++M 
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMV  131

Query  163  RRMIDTPLATGVRVVDGMMTLAEGQRMGIFAPAGVGKSTLLGMFARGAQCDVAVIALIge  222
            R+ I  PL TG+R +D++ T +EGQR+GIF+++GVGKSTLL+M+  +++ D  V+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  223  rgrevrefveLILGPEGMARSVVVCATSDRSSIERAKAAYVATAIAEHFRDRGQRVLLMM  282
            RGREVREF+++ L+ E   R V+V ATSDR+++ER +A +VAT+IAE FRD G+RV+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  283  DSLTRFARAQREIGLAAGEPPARRGFPPSIFAELPRLLERAGMGEHGSITALYTVLAEDE  342
            DSLTR+ARA REI+LAAGE +    +PP++F+ LPRLLER+GMGE GSITA+YTVL E++
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  343  SGNDPIAEEVRGIVDGHMILSREIAAKNQYPAIDVLASLSRVMPQVMTPEYVraaarlre  402
              N+P+A+EVR+++DGH++LSR +A + +YPAIDVLA+LSRV P V + E  + AA LR 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  403  llaKHREVELLLQIGEYQPGGNPLADEAIRKIDAIRAFFNQATHELAAPQ  452
             LA  +EVELL++IGEYQ G +  +D AI     I +F+ Q+ +E+ +P+
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

611) fliI in NC_015740


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1069),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 185/373 (50%), Positives = 266/373 (72%), Gaps = 3/373 (0%)

Query  59   SYHPTEVEAEVMGFSSGKLYLMPVGSLAGIAPGARVVPLVNTGRLPMGMSMLGRVLDGAG  118
               P E  AEV+G++++K  L P  S AG+  G +V++L    ++P+G ++LGRV+DG G
Sbjct  47   CIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFG  106

Query  119  RALDGKGGMRAEDWVPMDGPVINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTG  178
            R+LDG+  +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ G
Sbjct  107  RPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  179  VGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIENILGEESIKRSVVVASPADDAPLM  238
            VGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+EE+ KR V+V + +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  239  RLRAAQYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKL  298
            R+RA    T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  299  PSLVERAGNAEQGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHIVLSRRLAEEGHYPA  358
            P L+ER+G +E+  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  359  IDIEASISRVMPQVVSAEHVRASQRFKQLWSRYQQSRDLISVGAYVPGGDPETDMAIARQ  418
            ID+ A++SRV P V S EH + +  +++  + YQ+   LI +G Y  G D +TD AI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  419  AEMVSYLRQGLDE  431
            +++ ++LRQ+ DE
Sbjct  404  PDICTFLRQSKDE  416

612) fliI in NC_018028


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1069),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 185/373 (50%), Positives = 266/373 (72%), Gaps = 3/373 (0%)

Query  59   SYHPTEVEAEVMGFSSGKLYLMPVGSLAGIAPGARVVPLVNTGRLPMGMSMLGRVLDGAG  118
               P E  AEV+G++++K  L P  S AG+  G +V++L    ++P+G ++LGRV+DG G
Sbjct  47   CIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFG  106

Query  119  RALDGKGGMRAEDWVPMDGPVINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTG  178
            R+LDG+  +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ G
Sbjct  107  RPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  179  VGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIENILGEESIKRSVVVASPADEAPLM  238
            VGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+EE+ KR V+V + +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  239  RLRAAQYCTRIAEYFRDQGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKL  298
            R+RA    T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  299  PSLVERAGNAEQGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHIVLSRRLAEEGHYPA  358
            P L+ER+G +E+  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  359  IDIEASISRVMPQVVSAEHVRASQRFKQLWSRYQQSRDLISVGAYVPGGDPETDMAIARQ  418
            ID+ A++SRV P V S EH + +  +++  + YQ+   LI +G Y  G D +TD AI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  419  AEMVSYLRQGLDE  431
            +++ ++LRQ+ DE
Sbjct  404  PDICTFLRQSKDE  416

613) fliI in NC_017532


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1069),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 185/373 (50%), Positives = 266/373 (72%), Gaps = 3/373 (0%)

Query  59   SYHPTEVEAEVMGFSSGKLYLMPVGSLAGIAPGARVVPLVNTGRLPMGMSMLGRVLDGAG  118
               P E  AEV+G++++K  L P  S AG+  G +V++L    ++P+G ++LGRV+DG G
Sbjct  47   CIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFG  106

Query  119  RALDGKGGMRAEDWVPMDGPVINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTG  178
            R+LDG+  +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ G
Sbjct  107  RPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  179  VGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIENILGEESIKRSVVVASPADDAPLM  238
            VGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+EE+ KR V+V + +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  239  RLRAAQYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKL  298
            R+RA    T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  299  PSLVERAGNAEQGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHIVLSRRLAEEGHYPA  358
            P L+ER+G +E+  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  359  IDIEASISRVMPQVVSAEHVRASQRFKQLWSRYQQSRDLISVGAYVPGGDPETDMAIARQ  418
            ID+ A++SRV P V S EH + +  +++  + YQ+   LI +G Y  G D +TD AI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  419  AEMVSYLRQGLDE  431
            +++ ++LRQ+ DE
Sbjct  404  PDICTFLRQSKDE  416

614) fliI1 in NC_007899


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1069),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 197/404 (49%), Positives = 289/404 (72%), Gaps = 12/404 (2%)

Query  25   GRITEVVGMLIKAVVPDVRVGEVCLVKRQGMEPLVTEVVGFTQHFAFLSPLGELTGVSPS  84
            GRI +V + L++A +P+V +GE+C +K  G E  ++EVVG+    A+LSP+   +G+  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  85   SEVIPTGLPLYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHRE  142
             +V    ++L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+
Sbjct  80   QQV----MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQ  133

Query  143  KLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGER  202
             +   L TG+R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGER
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGER  192

Query  203  GREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMD  262
            GREVREFI+  L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  263  SVTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDD  322
            S+TR+ARA RE++LAAGE +  + Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  323  MNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREV  382
            MNEP+ADEV+S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  383  LAKYKANEMLIRIGEYRRGSDRGVDFAIDHIDKLNRFLKQDIHE  426
            LA Y+  E+LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

615) Dret_0572 in NC_013223


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  286 bits (1069),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 193/403 (48%), Positives = 275/403 (69%), Gaps = 10/403 (2%)

Query  19   WGKVTNIVGVLVQGYCPNVSVGSLCEIVPEGGESPVQAEVVGFRDAMALLMPLGELRGLA  78
            WG++ ++ + L+++  P V +G LC I P        AEVVG+ ++ ALL P+    GL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLH  77

Query  79   PGNLIKVLDSSATLPVGEDMLGRVLDAMGYPIDGKGPLSLPR-SRMIY-AQPPGPMERAQ  136
             G+ +  L     +PVGE +LGRV+D+ G P+DG+    LP   +  Y A PP +M R  
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE---LPEVCWKDYDAMPPPAMVRQP  134

Query  137  ISVPLDVGVSSINGLLTCGLGQRLAIMAGSGVGKSTLMGMIARDSKASINVIALIGERGR  196
            I+ PL  G+ +I+++ TCG GQR++I +++GVGKSTL++M+   + A  NV+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  197  EVREFIENDLGPEGLKRSVVIVATSDQSPVLRMRGafaatavaehfaDQGEDVMLIMDSV  256
            EVREFI+  L+ E  KR V++VATSD++++ R+R+ F AT++AE F D+G  V+L+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  257  TRYAMANREIGLAVGEPPTTKGYPPSVFAKLPKFLERAGNFKKGGSITGLYTVLVEGDDM  316
            TRYA A REI+LA GE + +  YPP+VF+ LP++LER+G   K GSIT++YTVLVEGDDM
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDDM  313

Query  317  NEPVADTVRSILDGHIVLDRRLANKNHYPPIDVLQSASRLMRQVVDEEHLQYSAQIQNVL  376
            NEP+AD VRS+LDGHIVL RRLA++ HYP+IDVL + SR+   V  +EH Q +A ++  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  377  ATYRESEDLVTIGAYTPGTNRALDDALNRIESVNEFLTQDKDE  419
            A Y+E E L+ IG Y  G +   D A++    +  FL Q KDE
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

616) Gobs_0975 in NC_013757


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  285 bits (1068),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 187/384 (49%), Positives = 267/384 (70%), Gaps = 9/384 (2%)

Query  38   VGDLVEINPSPSGGLLAEVVAV--SRERLTCMPLGELSGVHAGARVRATGMPLQVPVGEA  95
            +G+L  I+P   G  LAEVV++  S+  L+  P+   +G+H G +V A     QVPVGEA
Sbjct  42   MGELCCIKP---GEELAEVVGINGSKALLS--PFTSTAGLHCGQQVMALRRRHQVPVGEA  96

Query  96   LLGRVLDGLGRPVDGGPPLDQSLEFVDLASETPHALARTRVEEPLASGVRVLDTMVPLGK  155
            LLGRV+DG+GRP+DG    +      D  +  P A+ R  + +PL +G+R +D++   G 
Sbjct  97   LLGRVIDGFGRPLDGRELPEVCWK--DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGE  154

Query  156  GQRLGIFAGSGVGKSTLLAQITRGTDADVRVIGLIGERGREVREFLEENLGAEGMARTVV  215
            GQR+GIF+++GVGKSTLLA +  + DAD  V+ LIGERGREVREF++  L+ E   R V+
Sbjct  155  GQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVI  214

Query  216  VVATSDEPPLVRLKAAFVATRIAEGFRDQGRDVLLMMDSITRTAMAQREVGLSAGEPPAT  275
            VVATSD P+L R++A FVAT IAE FRD+G+ V+L+ DS+TR A A RE++L+AGE + +
Sbjct  215  VVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVS  274

Query  276  RGYPPSVFAMMPKLLEKAGTAAVGSITGLYTVLVDGDDHNEPIADTARSILDGHVVLTRK  335
              YPP+VF+ +P+LLE++G +  GSIT++YTVLV+GDD NEP+AD  RS+LDGH+VL+R+
Sbjct  275  GEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  336  LATAGHFPAIDVLESISRVATAVVPPAQMADAREVRRLMGALRDVKELIEIGAYQAGTDP  395
            LA  GH+PAIDVL ++SRV   V +  +   A  +RR ++  ++V  LI IG YQ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  396  LVDRARQLAPAIESFLQQPTGELT  419
              D+A +  P I +FL+Q+ +E+ 
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVC  418

617) hrcN in NC_011983


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  285 bits (1068),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 197/419 (48%), Positives = 291/419 (70%), Gaps = 12/419 (2%)

Query  21   SGRVTSVSGLLVRANVPAVRIGELCELREPGTDEVGFADVVGIEGETALLSLHGTTRGIS  80
             GR+  VS+ L+ A +P+V +GELC ++ PG +   +A+VVGI+G  ALLS   +T G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIK-PGEE---LAEVVGINGSKALLSPFTSTAGLH  77

Query  81   VRTEVIPTGREPVIAVGDFLLGAVIDAHGNIIRKAEGVTGR--AGETSQplyasppapla  138
               +V++  R   ++VG+ LLG VID+ G        + GR  +    +   A PP+++ 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGR------PLDGRELPEVCWKDYDAMPPPAMV  131

Query  139  rrpvarhlpVGIPAIDGLLTCGEGQRVGIFGPPGAGKSTLVSDIVKNVDADVVVCALVGE  198
            R+P+++ L  GI AID++ TCGEGQRVGIF++PG GKSTL++ + +  DAD  V  L+GE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  199  RGREIGEFVELVMPAGARSNAVLVTATSERPALERFKAVLTATAIAEHFRDRGKRVVLVV  258
            RGRE+ EF+++ ++  +R   V+V ATS+RPALER +A++ AT+IAE FRD GKRVVL+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  259  DSVTRLARALREIGLAAGEPPVRRGFPPSVFALLPQIFERAGNSAEGTMTAFYTVLVEGE  318
            DS+TR ARA REI+LAAGE +V   +PP+VF+ LP+++ER+G +  G++TAFYTVLVEG+
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  319  ERTDPIAEETRALLDGHIVLSDRIAQAGQFPAIDILASRSRTMNAVVTETHRRASDRLRS  378
            +  +P+A+E R+LLDGHIVLS R+A+ G++PAID+LA+ SR    V ++ HR+ +  LR 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  379  MLALYKEVELLIRVGEYQDGRDAAIDEAVRKRTLIGNFLFSGHAKAPSFEETVARLQEL  437
             LALY+EVELLIR+GEYQ G D+  D A+     I  FL  +     + E  + +L+++
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

618) fliI1 in NC_007645


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  285 bits (1068),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 189/402 (48%), Positives = 274/402 (69%), Gaps = 8/402 (1%)

Query  14   PDAFLGEVCEVFSPGQLTSIAAEVVGFRHGRVLLMPLGRVTGIHVGSEVVATGLPASVTV  73
            P+ F+GE+C + +  +L    AEVVG+  ++ LL P+   +G+H G +V+A      V V
Sbjct  38   PGVFMGELCCIKPGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPV  93

Query  74   NDGMLGKVVNAFGTPLDGGVLSSPGKSYPLYRE-PINPMERAPCDEPLNLGVRVIDAFCA  132
             +++LG+V+++FG PLDG  L  P      Y   P  +M R P  +PL  G+R ID+  +
Sbjct  94   GEALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT  151

Query  133  MAKGQRVGIFAGSGVGKSTLLGMIAKQCDAEVNVIALIGERGREVSEFIQDNLGSDGLKK  192
             + GQRVGIF+++GVGKSTLL+M+ +  DA+ NV+ LIGERGREV EFI+  L+ +  K+
Sbjct  152  CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKR  211

Query  193  SVVVAATADEPALVRVHAAFVATAIAEYFKDKGKHVMLYMDSITRLATAQREIGLAIGEP  252
             V+V AT+D PAL RV+A FVAT+IAE+F+D+GK+V+L  DS+TR A A REI+LA GE 
Sbjct  212  CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGET  271

Query  253  PTSRGYTPSTFSLLPRLTERAGIFKSGGSISALYTVLVEGDDFNEPVSDTVRSILDGHIM  312
            + S  Y P+ FS LPRL ER+G+    GSI+A+YTVLVEGDD NEP++D VRS+LDGHI+
Sbjct  272  AVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  313  LKRQLAHQGIFPAIDIRESMSRLFPRVTGKEQQMAVRELIRLESLYQESKELIELGAYKQ  372
            L R+LA++G +PAID+  ++SR+FP VT+ E++     L R  +LYQE   LI +G Y++
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  373  GGDPEIDQAIRVHKALNKFISQSEGESGSNRDIVTALKQVLS  414
            G D + D+AI     +  F+ QS +E  +   ++  L Q+L+
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

619) sctN in NC_014718


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  285 bits (1068),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 198/402 (50%), Positives = 293/402 (73%), Gaps = 7/402 (1%)

Query  42   RNGKVLEVIGTLVKVGGLDVTLGELCELRAADGSLLQHAEVIGFTRDVALLSPFSRLESI  101
            R G++ +V +TL++    +V +GELC +++++    + AEV+G+    ALLSPF+   ++
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  102  SRSTRVIGLGRPLSVPVGEGLLGRVIDSLGQPIDGFGPIDANEERPIFADSPDP-MSRRM  160
              + +V++L R   VPVGE+LLGRVID++G+P+DG    +    +  +   P P M R+ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMVRQP  134

Query  161  IEYPLATGVRVVDSMMTLAEGQRMGIFAPAGVGKSTLLGMFARGAQCDVTVIALIgergr  220
            I  PL TG+R +DS+ T +EGQR+GIF+++GVGKSTLL+M+  +++ D  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  221  evrefveLILGKEGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGQRVLLMMDSL  280
            EVREF+++ L+ E   R V+V ATSDR+++ER +A +VAT+IAE+FRD G+RV+L+ DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  281  TRFARAQREIGLAAGEPPARRGFPPSIFAELPRLLERAGMGATGSITALYTVLAEDESGS  340
            TR+ARA REI+LAAGE +    +PP++F+ LPRLLER+GMG  GSITA+YTVL E++  +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  341  DPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMSQVMPREYVDAAARVRELLA  400
            +P+A+EVR++LDGH++LSR +A R +YPAIDVL++LSRV + V ++E  + AA +R  LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  401  KHREVEMLLQIGEYQPGGNPLADEAIAKIDAIRDFLGQRTDE  442
              +EVE+L++IGEYQ G +  +D AI     I  FL Q  DE
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

620) Thimo_0273 in NC_019940


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  285 bits (1067),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 189/395 (48%), Positives = 278/395 (71%), Gaps = 5/395 (1%)

Query  55   VGGRCTIEAMDGSEVDAEVVGFAGERLYLMLAGEDRGLTVNARVTPARHGGGVPVGPEML  114
            +G  C I +  G E+ AEVVG+ G +  L       GL    +V + R+   VPVG  +L
Sbjct  42   MGELCCIKP--GEEL-AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  115  GRVLDGAGRPWDGRGPLRAQSRAPLHGRTINPMARAPIDEPLDVGVRAINALLTVGRGQR  174
            GRV+DG GRP DGR  L    +   ++    +M R PI +PL  G+RAI+++ T G GQR
Sbjct  99   GRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  175  MGLFAGSGVGKSALLGMMTRNTNADVTVVGLIGERGREVREFVQNTLGDEGrrravvvav  234
            +G+F+++GVGKS+LL+M+    +AD  V+ LIGERGREVREF++ TL++E R+R V+V  
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  235  padrppLMRLHGAMLATSIAEYFRDQGQRVLLLMDSLTRYAQAQREIALAIGEPPATKGY  294
             +DRP+L R+++  +AT+IAE+FRD+G+RV+LL DSLTRYA+A REIALA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  295  PPSVFAKLPHLAERAGAGDGKGSITAFYTVLVEGDDQLDPIADSARAILDGHVVLSRALA  354
            PP+VF+ LP+L ER+G G+ KGSITAFYTVLVEGDD  +P+AD  R++LDGH+VLSR LA
Sbjct  278  PPGVFSALPRLLERTGMGE-KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  355  DAGHYPAIDIEASVSRLMHEIAAAPHQEAARGLKRLVSLYNRNQDLITLGAYRRGQNAEL  414
            + GHYPAID+ A++SR+   +++  H++ A  L+R ++LY+  + LI +G Y+RG +++ 
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  415  DEAVERRPAISAFLRQGMRERVDLQSSIAQLIELM  449
            D A++  P I +FLRQ+  E  + +  I +L +++
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

621) fliI in NC_021286


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  285 bits (1065),  Expect = 6e-78, Method: Compositional matrix adjust.
 Identities = 183/385 (48%), Positives = 270/385 (71%), Gaps = 9/385 (2%)

Query  56   SGDIEAEVVGFEGNISYLMPTEDAHGVIPGARVRPLNRKNQLPLGMELLGRVIDARGEPL  115
            +G+  AEVVG++G+ + L P   + G+  G +V +L R++Q+P+G  LLGRVID+ G PL
Sbjct  50   PGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPL  109

Query  116  DDKGPIFSDG--KTYRSKPMNPLNRRQVKQPLDVGVTAINACLTVGQGQRMGLFAGSGVG  173
            D++   +++   K Y + P  ++ R+ + QPL  G+ AI++  T G+GQR+G+F+++GVG
Sbjct  110  DGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  174  KSVLLGMMTRGTTADVIVVGLIGERGREVKEFIEEILGEEGREKAVVIAAPADQSPLIRL  233
            KS LL+M+  +  AD  V+ LIGERGREV+EFI+  L+EE R + V++ A +D+++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  234  RGCETASQVAEYFRDQGLNVLLLMDSLTRYAMAQREIALAVGEPPATKGYPPSVFAKLPA  293
            R+   A+ +AE+FRD+G  V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  294  LVERAGNGGDGQGSVTAFYTVLTEGDDLQDPIADSARAILDGHIVLNRELADSGHYPAID  353
            L+ER+G G   +GS+TAFYTVL EGDD+++P+AD  R++LDGHIVL+R LA+ GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  354  IEASISRVMPQVVSEEHMQQAIKVRQWYSSYRRNRDLISIGAYTRGSDPAIDQAIAMQPR  413
            + A++SRV P V S+EH Q A  +R++ + Y+    LI IG Y RG D   D+AI   P 
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  414  VSMFLQQKMREVVNYDESLLLLNQL  438
            +  FL+Q   EV   +   LL+++L
Sbjct  406  ICTFLRQSKDEVCGPE---LLIEKL  427

622) fliI in NC_006512


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  285 bits (1065),  Expect = 6e-78, Method: Compositional matrix adjust.
 Identities = 183/385 (48%), Positives = 270/385 (71%), Gaps = 9/385 (2%)

Query  56   SGDIEAEVVGFEGNISYLMPTEDAHGVIPGARVRPLNRKNQLPLGMELLGRVIDARGEPL  115
            +G+  AEVVG++G+ + L P   + G+  G +V +L R++Q+P+G  LLGRVID+ G PL
Sbjct  50   PGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPL  109

Query  116  DDKGPIFSDG--KTYRSKPMNPLNRRQVKQPLDVGVTAINACLTVGQGQRMGLFAGSGVG  173
            D++   +++   K Y + P  ++ R+ + QPL  G+ AI++  T G+GQR+G+F+++GVG
Sbjct  110  DGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  174  KSVLLGMMTRGTTADVIVVGLIGERGREVKEFIEEILGEEGREKAVVIAAPADQSPLIRL  233
            KS LL+M+  +  AD  V+ LIGERGREV+EFI+  L+EE R + V++ A +D+++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  234  RGCETASQVAEYFRDQGLNVLLLMDSLTRYAMAQREIALAVGEPPATKGYPPSVFAKLPA  293
            R+   A+ +AE+FRD+G  V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  294  LVERAGNGGDGQGSVTAFYTVLTEGDDLQDPIADSARAILDGHIVLNRELADSGHYPAID  353
            L+ER+G G   +GS+TAFYTVL EGDD+++P+AD  R++LDGHIVL+R LA+ GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  354  IEASISRVMPQVVSEEHMQQAIKVRQWYSSYRRNRDLISIGAYTRGSDPAIDQAIAMQPR  413
            + A++SRV P V S+EH Q A  +R++ + Y+    LI IG Y RG D   D+AI   P 
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  414  VSMFLQQKMREVVNYDESLLLLNQL  438
            +  FL+Q   EV   +   LL+++L
Sbjct  406  ICTFLRQSKDEVCGPE---LLIEKL  427

623) fliI in NC_009439


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  284 bits (1062),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 187/382 (49%), Positives = 269/382 (71%), Gaps = 3/382 (0%)

Query  67   AEVMGFSGGKIYLMPVGSLAGIAPGARVVPLPDAGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++G+K  L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPVDGPAINPLNRDPISQPLDVGIRTINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+ +  ++ R+PI+QPL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIDEILGAEGLKRSVVVASPADDAPLMRLRAAQYC  246
            M+    +A+  V+ LIGERGREV+EFID  L+ E  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPRLVERAG  306
            T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LPRL+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGEAGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIESSIS  366
             GE   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ +++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVPPEQLKQAQRFKQLWSRYQQSRDLISVGAYVPGGDADTDLAIARQPQMAQYLR  426
            RV P V + E+ + A  +++  + YQ+   LI +G Y  G D+DTD AI   P++  +LR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QGLGESVDMAQSREQLAAVLGA  448
            Q+ +E  +     E+L  +L  
Sbjct  412  QSKDEVCGPELLIEKLHQILTE  433

624) Psest_1722 in NC_019936


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  284 bits (1064),  Expect = 7e-78, Method: Compositional matrix adjust.
 Identities = 183/373 (50%), Positives = 265/373 (72%), Gaps = 3/373 (0%)

Query  59   SYHPTEVEAEVMGFSSGKLYLMPVGSLAGIAPGARVVPLVNTGRLPMGTSMLGRVLDGAG  118
               P E  AEV+G++++K  L P  S AG+  G +V++L    ++P+G ++LGRV+DG G
Sbjct  47   CIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFG  106

Query  119  RALDGKGGMKAEDWVPMDGPVINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTG  178
            R+LDG+  +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ G
Sbjct  107  RPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  179  VGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIENILGEESIKRSVVVASPADEAPLM  238
            VGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+EE+ KR V+V + +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  239  RLRAAQYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKL  298
            R+RA    T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  299  PSLVERAGNAEQGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHIVLSRRLAEEGHYPA  358
            P L+ER+G +E+  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  359  IDIEASISRVMPQVVSADHVRASQRFKQLWSRYQQSRDLISVGAYVPGGDPETDMAIARQ  418
            ID+ A++SRV P V S +H + +  +++  + YQ+   LI +G Y  G D +TD AI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  419  AEMVRYLRQGLGE  431
            +++  +LRQ+ +E
Sbjct  404  PDICTFLRQSKDE  416

625) L083_7699 in NC_021191


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  284 bits (1063),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 169/344 (50%), Positives = 249/344 (73%), Gaps = 0/344 (0%)

Query  91   RVAVGQDLRGRILDGLGRPMDGGPPLRGEMVGIEAAPPSAMERQLVDAPMPLGVRVLDTL  150
            +V+VG+ L GR++DG+GRP+DG         + +A PP+AM RQ +  P+  G+R +D++
Sbjct  90   QVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSV  149

Query  151  VPCGRGQRIGIFAGSGVGKSTLMSMITRGTTAELNVVALVGERGREVREFIEHDLGPEGL  210
              CG GQR+GIF+++GVGKSTL++M+  +  A+ NV+ L+GERGREVREFI+  L+ E  
Sbjct  150  ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETR  209

Query  211  ARSVVVIATSDTPPLVRLRAPLVATRIAEYFRDEGGDVLMLMDSVTRAAMAQREVGLSVG  270
             R V+V+ATSD P+L R+RA +VAT IAE+FRD+G  V++L DS+TR A A RE++L+ G
Sbjct  210  KRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAG  269

Query  271  EPPATRGYPPSVFAMLASLLERAGPGARGSITGLYTVLVEGDDHNEPIADAARSILDGHI  330
            E + +  YPP+VF+ L+ LLER+G G +GSIT++YTVLVEGDD NEP+AD  RS+LDGHI
Sbjct  270  ETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  331  VLDRKLATAGHFPSIQALDSISRVANKITTPEQKSDATELRRMMAAHRDVRELVEIGAYV  390
            VL R+LA  GH+P+I+ L ++SRV   +T+ E++  A+ LRR +A  ++V  L+ IG Y 
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  391  PGTNPDADRATAIWPQITAFLRQGLDEKVTAEQAWAQLRQLIAA  434
             G + D+D+A    P+I +FLRQ+ DE   +E    +L+Q+++ 
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

626) CK3_10900 in NC_021035


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  284 bits (1063),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 177/363 (49%), Positives = 261/363 (72%), Gaps = 1/363 (0%)

Query  55   AEVVGFKNGKIQLMTYENISGITAGSFVRNTGCRLQIPVGDFLKGRIINALGHPIDEKGE  114
            AEVVG++ +K  L  + + +G+  G  V     R Q+PVG+ L GR+I+++G+P+D + E
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-E  113

Query  115  FPPGKLYTVDSAYINPLNRPPIREHLEFGIKAIDGLNTIGKGQRMGIFAGSGVGKSTLMG  174
            +P       D+    ++ R PI + L  GI+AID++ T G GQR+GIF+++GVGKSTL++
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  175  MIARNVKTDINVIALVGERGREVLEFVKKDLGEEGMKRSVLIVATSDQPAMLRMKCPLVA  234
            M+     +D NV+ L+GERGREV EF+   L+EE  KR V++VATSD+PA+ R++  +VA
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  235  TTIAEYFRDQGADVLLMMDSLTRYAMAQREIGLAIGEPPIARGYTPSIYAEFPRLLERSG  294
            TTIAE+FRD+G  V+L+ DSLTRYA A REI+LA GE +++  Y P++++ +PRLLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  295  NFAKGSITGIYTVLVEGDDTNEPVADTVRGILDGHIVLSRQLANANHFPAIDISASISRL  354
               KGSIT++YTVLVEGDD NEP+AD VR++LDGHIVLSR+LA+  H+PAID+ A++SR+
Sbjct  294  MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRV  353

Query  355  MNDIAGEEHRKAASRFRNMLSLYQKNADLISIGAYKKGANSALDEAVDRIGDMNKFLEQE  414
               ++++EHR+ A+ +R  L+LYQ    LI IG Y++G ++  D A+D   D+  FL Q 
Sbjct  354  FPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

Query  415  TNE  417
             +E
Sbjct  414  KDE  416

627) Marme_1076 in NC_015276


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  284 bits (1063),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 204/420 (49%), Positives = 297/420 (71%), Gaps = 17/420 (4%)

Query  45   GRVTKINGILVESRIADARIGDLCTIQGRGNHRVLAEIIGFSSDIVLLSALGALEGISVG  104
            GR+  +++ L+++++++  +G+LC I+   +   LAE++G+++   LLS++ +  G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  105  ASIMPHYQAHCIDSDESLLGSVLDGFGRLLQGKRDAFTLEESEHTSKVIRDAIAPTQ--R  162
              +M+  + H +  +E+LLG V+DGFGR L+G+      E +E   K   DA++P    R
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR------ELPEVCWKDY-DAMPPPAMVR  132

Query  163  PRISAPMPTGVRAIDGLLTIGEGQRIGVFAGAGCGKTTLLAELARNMPCDVIVFGLIGER  222
              I+ P+ TG+RAID++ T GEGQR+G+F+++G GK+TLLA L      D  V+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  223  GRELREFLDHELDEELRSRSVLVCSTSDrtsmeraraastataiaeGFRAQGKRVLLLID  282
            GRE+REF+D  L EE R R V+V +TSDR ++ER RA   AT+IAE FR +GKRV+LL D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  283  SLTRFARAQREIGLAAGEPPGRGGFPPSVYTMLPRLVERAGNMEGAGSITALYTVLIEGD  342
            SLTR+ARA REI+LAAGE +  G +PP+V++ LPRL+ER+G M   GSITA+YTVL+EGD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGD  311

Query  343  VIAGDPVADEVRSLLDGHIILSRKLAEKNHYPAIDVLGSISRTMPNVTDPNHIQSAAVLR  402
             +  +P+ADEVRSLLDGHI+LSR+LAE+ HYPAIDVL+++SR  P VT  +H Q AA+LR
Sbjct  312  DM-NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILR  370

Query  403  NLMSAYKEVEMLIRLGEYEQGNDPLTDTAVALNGTILEFLQQS---MRSPSSIQDTLHAL  459
              ++ Y+EVE+LIR+GEY++G D  TD A+     I  FL+QS   + +P  + + LH +
Sbjct  371  RRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

628) Turpa_4026 in NC_018020


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  284 bits (1064),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 193/447 (44%), Positives = 289/447 (65%), Gaps = 19/447 (4%)

Query  12   LLDKYRDIIRKTDTIRSLGSVLEIQGNVVFSKGPEVRLGELCHIEVNSTIERFSPTGKRA  71
            L+++ R      D     G + ++ + ++ +  P V +GELC I             K +
Sbjct  5    LMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI-------------KPG  51

Query  72   EENYILAEVVGFRESTVVLAPLEKIVGVSAGNRVVSTGNMPSVSLTSAVLGRVIDGMGRP  131
            EE   LAEVVG+  S  +L+P+    G+  G++V++      V++  A+LGRVIDG GRP
Sbjct  52   EE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRP  108

Query  132  IDNRGMLVEGETRGLYGD-PPQPLSRPLIRTPMYTGVKAIDAFLTLGQGQRVGIFAGSGV  190
            +D R +      +  Y+  PP ++ R  I  P+ TG++AID+  T G+GQRVGIF+++GV
Sbjct  109  LDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGV  166

Query  191  GKSTLLGMIAKYSTADVNVIALIGERGREVAEFIQEQLGESGRKKSVVIASIASESPMNR  250
            GKSTLL+M+ + + AD NV+ LIGERGREV EFI+  L+E  RK+ V++ + +  ++++R
Sbjct  167  GKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALER  226

Query  251  VRAGYLATTIAEYFRDQGKNVLLMMDSITRLAHAQREIGLSRGEPPTTRGYPPSVFSLIP  310
            VRA ++ATTIAE+FRD+GK V+L+ DS+TR A+A REI+L+ GE + +  YPP+VFS +P
Sbjct  227  VRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALP  286

Query  311  GLMERAGTSDKGSITGIYSVLVEGDDMNEPIADTARGVLDGHITLSRRLNTQNQYPAIDI  370
             L+ER+G ++KGSIT++Y+VLVEGDDMNEP+AD  R++LDGHI LSRRL  + +YPAID+
Sbjct  287  RLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDV  346

Query  371  ADSISRTMVNVVDKEHLKNAQDFREIYTAYKENEETINLGAYARGADPVIDNAILLREPM  430
              ++SR    V   EH + A  +R   + Y+E E  I +G Y RG D   D+AI     +
Sbjct  347  LATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDI  406

Query  431  RRFLRQTPEEQIPFEETRRQLREILGQ  457
              FLRQ+ +E    E    +L++IL +
Sbjct  407  CTFLRQSKDEVCGPELLIEKLHQILTE  433

629) rhcN in NC_012586


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  284 bits (1062),  Expect = 9e-78, Method: Compositional matrix adjust.
 Identities = 212/435 (49%), Positives = 307/435 (71%), Gaps = 9/435 (2%)

Query  10   GDLVRRLRERALGSETRPLHGRVRRITGIIVHATAPMVRIGELCHLRDPVSGATvpaevv  69
             +L++RLR +   ++     GR++ +++ +++A  P V +GELC ++     +   AEVV
Sbjct  3    NELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIK----PGEELAEVV  58

Query  70   gfeeeeavLTPIGDLDGMSTRAEVIATGRTLQIPVCDDLLGRVVNPLGEILDVSDERAIP  129
            G++   A+L+P+    G+    +V+A  R  Q+PV + LLGRV++ +G  LD    R +P
Sbjct  59   GINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD---GRELP  115

Query  130  VVTDTYYPTHRPPPHALRRDLITEPLQLGIRAIDGLLTVARGQRVGIFGEPGVGKSSLLS  189
             V    Y +   PP A+ R+ IT+PL  GIRAID++ T + GQRVGIF+ PGVGKS+LL+
Sbjct  116  EVCWKDYDAM--PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  190  AIVRGTKADVIVIGLIGERGREVREFIEGQLGEEGrrrsvvvvATSDRPAIERVKaayaa  249
             +  +  AD  V+ LIGERGREVREFI+  L+EE R+R V+VVATSDRPA+ERV+A + A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  250  taiaEYFRDQRRDVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSLFAALPRLLERAG  309
            T+IAE+FRD+ + V+LL DS+TR+ARA REI+LAAGE +    YPP++F+ALPRLLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  310  PGQGGSITALYTVLTEGDGTLDPVAEETKAILDGHIMLSSALAERNFFPAIDILKSRSRL  369
             G+ GSITA+YTVL EGD+  +P+A+E +++LDGHI+LS  LAER  +PAID+L + SR+
Sbjct  294  MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRV  353

Query  370  METVAGRTHRDHAARIRTLLARYEEIELLLRVGEYERGADALSDEAIDKRDAIEAFLQQS  429
               V+++ HR+ AA +R  LA Y+E+ELL+R+GEY+RG D+ +D AID    I +FL+QS
Sbjct  354  FPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

Query  430  GDEFSPLEATVEHLR  444
             DE    E  +E L+
Sbjct  414  KDEVCGPELLIEKLH  428

630) HrcN in NC_007005


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1061),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 216/430 (51%), Positives = 303/430 (71%), Gaps = 20/430 (4%)

Query  17   SEYCAVRVIGRVSAVRGILLECKIPSAKVGDLCEVSKADGSLLLAEIVGFTQECTLLSAL  76
              YC     GR+  V + LL+  +P+  +G+LC +  ++    LAE+VG+    +LLS++
Sbjct  17   DGYCR---WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPF  70

Query  77   GPPDGIQVGAPIRPLGVAHRIGVDDSLLGCVLDGFGRPLMGDCLGAFAGPEDRRTTLPVI  136
             +  G++ G  + +L   H++ V+++LLG V+DGFGRPL G  L     PE  +      
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL-----PEVCWKDY---  122

Query  137  ADALPPTQ--RPRITRALPTGIRAIDSAILLGEGQRVGLFAGAGCGKTTLMAELARNMDC  194
             DA+PP    R  IT++L TGIRAIDS    GEGQRVG+F+++G GK+TL+A L    D 
Sbjct  123  -DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA  181

Query  195  DVIVFGLIGERGRELREFLDHELDETLRRRSVLVCATSDRSSMeraraaftataiaeafr  254
            D  V+ LIGERGRE+REF+D  L E  R+R V+V ATSDR+++ER RA F AT+IAE FR
Sbjct  182  DSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFR  241

Query  255  arGQKVLLLLDSLTRFARAQREIGIASGEPLGRGGLPPSVYTLLPRLVERAGMSENGSIT  314
              G++V+LL DSLTR+ARA REI++A+GE    G  PP+V++ LPRL+ER+GM+E+GSIT
Sbjct  242  DNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSIT  301

Query  315  ALYTVLIEQDSMNDPVADEVRSLLDGHIVLSRKLAERGHYPAIDVSASISRILSNVTGRE  374
            A+YTVL+E D MN+P+ADEVRSLLDGHIVLSR+LAERGHYPAIDV A++SR+++ VT++E
Sbjct  302  AFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHE  361

Query  375  HQRANNRLRQLLAAYKQVEMLLRLGEYQAGADPVTDCAVQLNEAINAFLRQ---DLREPV  431
            H++    LR+ LA Y++VE+L+R+GEYQ G D  TD A++    I +FLRQ   ++  P 
Sbjct  362  HRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

Query  432  PLQETLDRLL  441
             L E L+++L
Sbjct  422  LLIEKLHQIL  431

631) fliI in NC_010501


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1061),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 191/384 (50%), Positives = 269/384 (71%), Gaps = 9/384 (2%)

Query  67   AEVMGFAGSKIFLMPVGSIAGIAPGARVVPLDDSGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G+ GSK +L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPIINPLNRDPISQPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI+QPL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +A+  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATRGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             GE   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVDANHLRQAQKFKQLWSRLSQSRD---LISVGAYVAGGDPETDLAIALQPKLVD  423
            RV P V   +H RQ   +  L+ RL+  ++   LI +G Y  G D +TD AI   P +  
Sbjct  352  RVFPVVTSHEH-RQLAAI--LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  424  FLRQGLDENVGMDQSRQQLGAIFT  447
            FLRQ+ DE  G +   ++L  I+T
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

632) hrcN in NC_017575


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1060),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 200/412 (49%), Positives = 296/412 (72%), Gaps = 17/412 (4%)

Query  22   RFGKVVEVTGTLLRVGGVDVRLGELCTLTEADGTVMQEGEVVGFSEHFALVAPFSGVTGL  81
            R G++ +V++TLL     +V +GELC +  ++    + +EVVG++   AL++PF++ +GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGL  76

Query  82   SRSTRVVPSGRALSVGIgpgllgrvldglgrpADG-GPPLDVVEHVPV----FANAPDP-  135
              + +V++  R   V +G +LLGRV        DG G PLD  E   V    +   P P 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRV-------IDGFGRPLDGRELPEVCWKDYDAMPPPA  129

Query  136  MTRRLVEHPLATGVRVIDGLATLAEGQRMGIFAPAGVGKSTLMGMFARGTECDVNVIVLI  195
            M R+ + +PL TG+R ID++AT +EGQR+GIF+++GVGKSTL++M+  + + D NV+VLI
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  196  GERGREVREFIEQILGEEGMRRSVVVCATSDRSAVERAKAAHVGTAVAEYFRDQGLRVLL  255
            GERGREVREFI+  L+EE  +R V+V ATSDR+A+ER +A  V+T++AE+FRD+G RV+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  256  MMDSLTRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMSSAGSITALYTVLAE  315
            + DSLTR+ARA REI+LAAGE +    +PP+VF+ LPRLLER+GM+  GSITA+YTVL E
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  316  DESGNDPVAEEVRGILDGHLILSRDIAARNRYPAIDILNSLSRVMTQVMPREHCDAAGRM  375
            ++  N+P+A+EVR++LDGH++LSR +A R +YPAID+L +LSRV   V ++EH + A+ +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  376  RQLLAKYNEVETLLQMGEYKEGSDPVADAAVQWNDWMEGFLRQRTDEWCSPD  427
            R+ LA Y+EVE L+++GEY+ G D  +D A++    +  FLRQ  DE C+P+
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

633) Nther_1394 in NC_010718


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1061),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 199/415 (48%), Positives = 300/415 (73%), Gaps = 4/415 (0%)

Query  25   GEVTRVVGLTVEARGPGAKIGDLCLIRSDDQEIECEVVGFNDGKILLMPLGNLNNVAPGN  84
            G +  V +  ++A+ PG  +G+LC I+++++  E  VVG+N++K LL P+ +   +  G+
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEELAE--VVGINGSKALLSPFTSTAGLHCGQ  80

Query  85   KVITSRENLSvpvgpglvgrvldglgrpMDGKGPLTNTKCRYPMENTPPAPLDRSRIQKP  144
            +V++ R    VPVG +L+GRV+DG+GRP+DG+  L +  C+   +  PP+++ R  I +P
Sbjct  81   QVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEV-CWKDYDAMPPPAMVRQPITQP  138

Query  145  IQTGIKAIDGVLTIGKGQRMGIFSGSGVGKSTLLGMIARNTSASVNVIGLIGERGREVRE  204
            + TGI+AID+V T G GQR+GIFS++GVGKSTLL+M+     A  NV+ LIGERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  205  FIEKDLGEEGLQRSVIVVATSDQPALLRIKGAMTATAIAEYFRDCGNDVMLMMDSVTRFA  264
            FI+  L+EE  +R VIVVATSD+PAL R+++   AT+IAE+FRD G+ V+L+ DS+TR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  265  TAKREVGLATGEPPATRGFPPSVFAMLPQLLERSGTSDKGSVTGLYTVLVDGDDMDEPVS  324
             A RE++LA+GE + +  +PP+VF+ LP+LLER+G ++KGS+T++YTVLV+GDDM+EP++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  325  DTVRGVLDGHIVLSRKLAMQNHYPAIDILQSISRVMVDITDTQHQkaaakissalaaYEE  384
            D VR++LDGHIVLSR+LA + HYPAID+L ++SRV   +T  +H++ AA +   LA Y+E
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  385  ARDLIEIGAYKKGSNPKVDWAMELIDDLNEFLRQEITEKTTLDETINKLKKFLDD  439
               LI IG Y++G +   D A++   D+  FLRQ   E    +  I+KL ++L +
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

634) fliI in NC_011296


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1060),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 179/379 (48%), Positives = 260/379 (69%), Gaps = 6/379 (1%)

Query  44   IGDICEIITDENSVEAEVVGFKNGTILLSPLGEVYGIKAGATIAVKGKQSYIPLNNDILG  103
            +G++C I  +E+   AEVVG++ +  LLSP+    G+  G  +    ++  +P+ + +LG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  104  RIIDGTGNPIDGGVSLKGKPFPIYKEVINP-LEREIIKEPLDLGIRAINALITCGKGQKI  162
            R+IDG G P+DG   L       Y  +  P + R+ I +PL  GIRAI+++ TCG GQ++
Sbjct  100  RVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  163  GIMAGSGVGKSVLLGMIARYTSADINVIALIGERGREVREFIENDLADGLKK-SVVVVST  221
            GI +++GVGKS LL+M+     AD NV+ LIGERGREVREFI+  L++  +K  V+VV+T
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  222  SDAPALARIRGAFLATAIAEYFREQGKHVLLLMDSLTRFAMAQREIGLAAGEPPTMKGYP  281
            SD PAL R+R+ F+AT+IAE+FR++GK+V+LL DSLTR+A A REI+LAAGE +    YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  282  PSVFNLMPKLLERVGVIKNGGSITGIYTVLVEGDDLTDPVADASRAILDGHIVLSRELAN  341
            P+VF+ +P+LLER G + + GSIT++YTVLVEGDD+ +P+AD  R++LDGHIVLSR LA+
Sbjct  279  PGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  342  RNHYPAIDPLKSISRLMKDIVDDKHLKYAGRLLDIIATYARYEDIINIGAYKEGTNAQVD  401
            R HYPAID L ++SR+   +  + H + A+ L   +A Y   E +I IG Y+ G +++ D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  402  FAIKMMDKINSFLKQDISE  420
             AI     I +FL+Q   E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

635) Swol_0852 in NC_008346


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1061),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 188/403 (47%), Positives = 281/403 (70%), Gaps = 11/403 (2%)

Query  22   CQLKGRISQAIGLTIEATGPRVRMGELCFLQTNYSDRQLVPAEVVGFKDKKILLMPLGNL  81
            C+  GRI +  +  ++A  P V MGELC ++   ++ +L  AEVVG+++ K LL P+ + 
Sbjct  20   CRW-GRIQDVSATLLNAWLPGVFMGELCCIK---PGEEL--AEVVGINGSKALLSPFTST  73

Query  82   EGIGPGSELLASGTTLRVQVGMELVGRVLNGLGEPIDDRG-RIKSETTYPVTNQPPSPLK  140
             G+  G +++A     +V VG  L+GRV++G+G P+D+R         Y     PP+++ 
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMV  131

Query  141  RKRITEVLQVGVKAIDGLVSIGKGQRMGILAGSGVGKSTLIGMIARNTEADINVIALIGE  200
            R+ IT+ L  G++AID++ + G GQR+GI++++GVGKSTL++M+    +AD NV+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  201  RGREVREFLERDLGEEGLGKSVVVVATSDQPALVRLKGAFVATSIAEYFRDQGKDVLFLM  260
            RGREVREF++  L+EE   + V+VVATSD+PAL R+++ FVAT+IAE+FRD+GK V++L 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  261  DSVTRFALAQREVGLAIGEPPATRGYTPSVFAMLPKLLERAGTSEKGTITGLYSVLVEGD  320
            DS+TR+A A RE++LA GE + +  Y P+VF+ LP+LLER+G +EKG+IT++Y+VLVEGD
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  321  DLNEPITDAVRGILDGHIALSRSLAAMNLYPAIDVGQSISRVMIDIASPKHIKNANRFRS  380
            D+NEP++D VR++LDGHI LSR LA    YPAIDV  ++SRV   ++S  H + A  +R 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  381  ILATYEEARDLIDIGAYKKGSNPRIDESI-ALIDKCQNFIRQD  422
             LA Y+E   LI IG Y++G +   D +I +  D C  F+RQ 
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC-TFLRQS  413

636) fliI in NC_021878


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1060),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 185/418 (45%), Positives = 291/418 (70%), Gaps = 11/418 (2%)

Query  20   FGRITNISAITLTAIGLEVAVGDIVRIESEQRLYSVLGMVTTINDSSFIIVPFSFIEGFK  79
             GRI ++SA  L A    V +G++  I + + L  V+G    IN+S  ++ PF+   G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVG----INGSKALLSPFTSTAGLH  77

Query  80   INDKVFLQRDGLTVKCGNGLLGRVVNALGEPIDNKGKIRDLDENSAINKISMSP--LERG  137
              ++V   R    V  G++LLGRV++++G P+D     R+L E    +  +M+P  + R 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG----RELPEVCWKDYDAMPPPAMVRQ  133

Query  138  IIDQKFSTGVKAIDSMLTCGKGQKVGIFAGSGVGKSTLMGMIVKGCEAQVKVVALVGERG  197
             I Q + TG++AIDS+ TCG GQ+VGIF+++GVGKSTL++M+ ++ +A+ +V+ L+GERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  198  REIPEFIHYNLNDDL-ENTVIVAATSDESALMRKYGAFTAMSIAEYFRDKGLDVLLMMDS  256
            RE+ EFI++ L+++     VIV ATSD +AL R  + F A +IAE+FRD+G  V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  257  VTRFAMAQREIGLSTGEPPVSRGYPPSVFALLPQLMERAGNNQKGSITAFFTVLVDGDDM  316
            +TR+A A REI+L++GE +VS  YPP+VF+ LP+L+ER+G  +KGSITAF+TVLV+GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  317  NDPIADQSRSILDGHIVLTRELTEQGFYPPINLLKSASRVMDKVVTKEHYNDFLKLKRVL  376
            N+P+AD+ RS+LDGHIVL+R L+E+G YP+I++L + SRV   V + EH +    L+R L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  377  SLIKENEVLVRVGAYKKGMDPELDNAMARKERIREFLTQSTQENVSFDEIITNFRKVL  434
            +L +E E+L+R+G Y++G+D + D+A+     I  FL QS +E  + + +I +++++L
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

637) ABED_1749 in NC_017187


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1060),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 185/418 (45%), Positives = 291/418 (70%), Gaps = 11/418 (2%)

Query  20   FGRITNISAITLTAIGLEVAVGDIVRIESEQRLYSVLGMVTTINDSSFIIVPFSFIEGFK  79
             GRI ++SA  L A    V +G++  I + + L  V+G    IN+S  ++ PF+   G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVG----INGSKALLSPFTSTAGLH  77

Query  80   INDKVFLQRDGLTVKCGNGLLGRVVNALGEPIDNKGKIRDLDENSAINKISMSP--LERG  137
              ++V   R    V  G++LLGRV++++G P+D     R+L E    +  +M+P  + R 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG----RELPEVCWKDYDAMPPPAMVRQ  133

Query  138  IIDQKFSTGVKAIDSMLTCGKGQKVGIFAGSGVGKSTLMGMIVKGCEAQVKVVALVGERG  197
             I Q + TG++AIDS+ TCG GQ+VGIF+++GVGKSTL++M+ ++ +A+ +V+ L+GERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  198  REIPEFIHYNLNDDL-ENTVIVAATSDESALMRKYGAFTAMSIAEYFRDKGLDVLLMMDS  256
            RE+ EFI++ L+++     VIV ATSD +AL R  + F A +IAE+FRD+G  V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  257  VTRFAMAQREIGLSTGEPPVSRGYPPSVFALLPQLMERAGNNQKGSITAFFTVLVDGDDM  316
            +TR+A A REI+L++GE +VS  YPP+VF+ LP+L+ER+G  +KGSITAF+TVLV+GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  317  NDPIADQSRSILDGHIVLTRELTEQGFYPPINLLKSASRVMDKVVTKEHYNDFLKLKRVL  376
            N+P+AD+ RS+LDGHIVL+R L+E+G YP+I++L + SRV   V + EH +    L+R L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  377  SLIKENEVLVRVGAYKKGMDPELDNAMARKERIREFLTQSTQENVSFDEIITNFRKVL  434
            +L +E E+L+R+G Y++G+D + D+A+     I  FL QS +E  + + +I +++++L
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

638) fliI in NC_009850


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1060),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 185/418 (45%), Positives = 291/418 (70%), Gaps = 11/418 (2%)

Query  20   FGRITNISAITLTAIGLEVAVGDIVRIESEQRLYSVLGMVTTINDSSFIIVPFSFIEGFK  79
             GRI ++SA  L A    V +G++  I + + L  V+G    IN+S  ++ PF+   G+ 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVG----INGSKALLSPFTSTAGLH  77

Query  80   INDKVFLQRDGLTVKCGNGLLGRVVNALGEPIDNKGKIRDLDENSAINKISMSP--LERG  137
              ++V   R    V  G++LLGRV++++G P+D     R+L E    +  +M+P  + R 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG----RELPEVCWKDYDAMPPPAMVRQ  133

Query  138  IIDQKFSTGVKAIDSMLTCGKGQKVGIFAGSGVGKSTLMGMIVKGCEAQVKVVALVGERG  197
             I Q + TG++AIDS+ TCG GQ+VGIF+++GVGKSTL++M+ ++ +A+ +V+ L+GERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  198  REIPEFIHYNLNDDL-ENTVIVAATSDESALMRKYGAFTAMSIAEYFRDKGLDVLLMMDS  256
            RE+ EFI++ L+++     VIV ATSD +AL R  + F A +IAE+FRD+G  V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  257  VTRFAMAQREIGLSTGEPPVSRGYPPSVFALLPQLMERAGNNQKGSITAFFTVLVDGDDM  316
            +TR+A A REI+L++GE +VS  YPP+VF+ LP+L+ER+G  +KGSITAF+TVLV+GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  317  NDPIADQSRSILDGHIVLTRELTEQGFYPPINLLKSASRVMDKVVTKEHYNDFLKLKRVL  376
            N+P+AD+ RS+LDGHIVL+R L+E+G YP+I++L + SRV   V + EH +    L+R L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  377  SLIKENEVLVRVGAYKKGMDPELDNAMARKERIREFLTQSTQENVSFDEIITNFRKVL  434
            +L +E E+L+R+G Y++G+D + D+A+     I  FL QS +E  + + +I +++++L
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

639) fliI in NC_011753


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1060),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 176/398 (45%), Positives = 274/398 (69%), Gaps = 9/398 (2%)

Query  43   IGSLCLVETMSGQMEAEVVGFSGDNLFLMPSEQITGILPGARVTPMTSESGIPVGMELLG  102
            +G LC +   +G+  AEVVG++G + +L P    +G+  G +V ++     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTEQRASFNAEPINPLARKPISEPLDVGLKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +  ++A P  ++ R+PI++PL  G++AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRSVVVA  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+E+ RKR V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  APADSSPLMRLKGCQTALAVAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A ++AE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGNDEQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  E+GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAYKPGTDP  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDSAFTLKPRLDEYLQQKMKETVPYDMCVNMLKHVLG  438
              D A+   P +  +L+Q   E    ++ ++ L ++L 
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

640) fliI in NC_016041


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1058),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 185/367 (51%), Positives = 261/367 (72%), Gaps = 5/367 (1%)

Query  59   AEVVGFSGDVTYLMPTESVKGIVPGSRVQPLSHDNGLAVGDELLGRVIDANGEPLDGKG-  117
            AEVVG++G  + L P  S  G+  G +V +L + + ++VG+ LLGRVID+ G PLDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  118  PIKCKQTASLTPPPINPLTRKPVNQPLDVGVRAINTVLTVGKGQRMGLFAGSGVGKSVLM  177
            P  C +     PPP  ++ R+P+ QPL  G+RAI++V T G GQR+G+F+++GVGKS L+
Sbjct  115  PEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  178  GMMTRGTTADVVVVGLIGERGREVKEFIQDILTaeerekavvvaapaDTSPLMRLKGCEA  237
            +M+  +  AD  V+ LIGERGREV+EFI+  L+ E R + V+V A +D ++L R+++   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  238  AVTIAEYFRDQGKDVLLLVDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERA  297
            A TIAE+FRD+GK V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  298  GNGTELQGSITAFYTVLTEGDDLQDPIADSARAILDGHIVLSRRLAESGHYPAIDIESSI  357
            G G   +GSITAFYTVL EGDD+++P+AD  R++LDGHIVLSRRLAE GHYPAID+ +++
Sbjct  293  GMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  358  SRVMPQVVNEEHVLQARNIKQVYSTYQQNKDLISIGAYARGTDNRIDLSIAAEPAINAFL  417
            SRV P V ++EH   A  +++  + YQ+   LI IG Y RG D   D +I + P I +FL
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  418  QQTMGQV  424
            +Q+ ++V
Sbjct  411  RQSKDEV  417

641) fliI in NC_009656


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1059),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 186/365 (51%), Positives = 260/365 (72%), Gaps = 3/365 (0%)

Query  67   AEVMGFSGSKVYLMPVGSLAGIAPGARVVPLPDTGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++GSK  L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MRAEDWVPMDGPTINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTRADIIVVGLIGERGREVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYC  246
            M+     AD  V+ LIGERGREV+EFID  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVEPGHLRDAQRFKQLWSRYQQSRDLISVGAYVAGGDAETDLAIARFPAMRQFLR  426
            RV P V    H + A  +++  + YQ+   LI +G Y  G D++TD AI  +P +  FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QALDE  431
            Q+ DE
Sbjct  412  QSKDE  416

642) Acav_0530 in NC_015138


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1058),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 198/403 (50%), Positives = 301/403 (75%), Gaps = 7/403 (1%)

Query  26   RSGKVAEVIGTLMRVNGLDAKLGELCHVLDERGELLQAAEVVGFANGQSILSPFGSILGV  85
            R G++ +V +TL+     +  +GELC +    GE L  AEVVG+  ++++LSPF S  G+
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL--AEVVGINGSKALLSPFTSTAGL  76

Query  86   RGGSPVVGLGEVLSVPVGPRLLGRVIDSLGQPIDGKG-PLDCSETRPVFALPPTPMEREM  144
            + G  V++L     VPVG  LLGRVID++G+P+DG+  P  C       A+PP +M R+ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQP  134

Query  145  IEHPLPTGVKAIDGLITLGEGQRMGIFAPAGVGKSTLMGMLARGTQCDVSVIALigergr  204
            I +PL TG++AID++ T GEGQR+GIF+++GVGKSTL++ML  + + D +V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  205  evrefvefiLGEEGMARSVVVCATSDRSSSERakaahvatavaEYYRDQGLKVLLMMDSL  264
            EVREF++F L+EE   R V+V ATSDR++ ER +A  VAT++AE++RD+G +V+L+ DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  265  TRFARAQREIGLAAGEPPARRGFPPSVFAEIPRLLERAGMGARGSITALYTVLYEDESGN  324
            TR+ARA REI+LAAGE +    +PP+VF+ +PRLLER+GMG +GSITA+YTVL E++  N
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  325  DPISEEVRGILDGHMILSRKIAARNQYPAIDVLGSLSRVMSQIVPREHQQAGGRFRQLMA  384
            +P+++EVR++LDGH++LSR++A R +YPAIDVL++LSRV + + ++EH+Q ++ +R+ +A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  385  KYEEIEPLVQMGEYKPGNDPLADEAMEKHEEIRAFLNQSTSDL  427
             Y+E+E L+++GEY+ G D  +D A++   +I +FL QS  ++
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEV  417

643) PCC21_022860 in NC_018525


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1059),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 207/422 (50%), Positives = 299/422 (71%), Gaps = 15/422 (3%)

Query  18   QRQHLAAYAPVE---KKGRVMAVSGILLECSLPQARIGDLCWVARQDDSQMMAEVVGFSP  74
            QR +L  Y+P +   + GR+  VS+ LL+  LP   +G+LC +   ++   +AEVVG++ 
Sbjct  7    QRLRLK-YPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGING  62

Query  75   DNTFLSALGALDGIAQGAAVTPLYQPHCIQVSERLLGSVLDGFGRSLEDGGESAFVEPGH  134
             +++LS++ +  G+  G  V +L + H + V+E LLG V+DGFGR+L++     + E   
Sbjct  63   SKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG---RELPEVCW  119

Query  135  ASGRTQPVLGDAPPPTSRPRISQPLPTGLRAVDGLLTIGQGQRVGIFAGAGCGKTTLLAE  194
                + P     PP+  R  I+QPL TG+RA+D++ T G+GQRVGIF+++G GK+TLLA 
Sbjct  120  KDYDAMP-----PPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAM  174

Query  195  LARNTPCDAIVFGLIGERGRELREFLDHELDDELRSRTVLVCSTSDRSSMeraraaftat  254
            L      D+ V+ LIGERGRE+REF+D  L +E R R V+V +TSDR+++ER RA F AT
Sbjct  175  LCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVAT  234

Query  255  aiaeayraeGRQVLLIIDSLTRFARAQREIGLALGEPQGRGGLPPSVYTLLPRLVERAGQ  314
            +IAE +R +G++V+L+ DSLTR+ARA REI+LA GE    G  PP+V++ LPRL+ER+G 
Sbjct  235  TIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM  294

Query  315  TEDGAITALYSVLIEQDSMNDPVADEVRSLIDGHIVLARRLAEQGHYPAIDVLASLSRTM  374
             E G+ITA+Y+VL+E D MN+P+ADEVRSL+DGHIVL+RRLAE+GHYPAIDVLA+LSR  
Sbjct  295  GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVF  354

Query  375  SNVVDTDHTRSAGGVRRLMAAYKQVEMLIRLGEYQPGHDVLTDSAVNAQAEITQFLRQSM  434
            + V   +H + A+ +RR +A Y++VE+LIR+GEYQ G D  TD A+++ ++I  FLRQS 
Sbjct  355  PVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

Query  435  RE  436
             E
Sbjct  415  DE  416

644) fliI in NC_014366


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1058),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 186/383 (49%), Positives = 270/383 (71%), Gaps = 10/383 (2%)

Query  58   VGGHCIIRNQDIGDVEAEVVGFSGDKLFLMPVEASLGLKPGDRVIPFREVSRVPVGMQLL  117
            +G  C I+    G+  AEVVG++G K +L P  ++ GL  G++V+++R   +VPVG  LL
Sbjct  42   MGELCCIKP---GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  118  GRVLDGRGKPLDGKGALDMHNAESLQREAINP--LQRTPISMPLDVGVRAINGLLAVGRG  175
            GRV+DG G+PLDG+   ++ +    + +A+ P  + R PI+ PL  G+RAI+++ + G G
Sbjct  99   GRVIDGFGRPLDGR---ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  176  QRMGLFAGSGVGKSVLLGMMTKFTTADITVVGLIGERGREVKEFIEQILGEEGLKRSVVV  235
            QR+G+F+++GVGKS LL+M+ +   AD  V+ LIGERGREV+EFI+  L+EE  KR V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  236  ASPADESPLMRLRAAVLCTAIAEHFRDQGKNVLLLMDSLTRYAQAQREIALSVGEPPATK  295
             + +D ++L R+RA  + T+IAE FRD+GK V+LL DSLTRYA+A REIAL+ GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  296  GYPPSVFAKLPALVERAGNGREGGGSITAFYTVLTEGDDVQDPVADSARAILDGHIVLSR  355
             YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD+++P+AD  R++LDGHIVLSR
Sbjct  276  EYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  356  ALAEEGQYPAIDIEASISRAMPQIVSAEHLKKAQGFKRLYARYQQSRDLISVGAYVKGSD  415
             LAE G+YPAID+ A++SR  P + S EH + A  ++R  A YQ+   LI +G Y +G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  416  RETDLAISKIAHLKGYLSQGLNE  438
             +TD AI   +++  +L Q+ +E
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDE  416

645) PC1_2208 in NC_012917


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1059),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 204/422 (49%), Positives = 299/422 (71%), Gaps = 15/422 (3%)

Query  18   QRQHLAGFAPVE---KKGRVMAVSGILLECSLPQARIGDLCWVARQDDSQMMAEVVGFSP  74
            QR +L  ++P +   + GR+  VS+ LL+  LP   +G+LC +   ++   +AEVVG++ 
Sbjct  7    QRLRLK-YPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGING  62

Query  75   DNTFLSALGALDGIAQGATVTPLYQPHCIQVSERLLGSVLDGFGRALEDDGESAFVEPGH  134
             +++LS++ +  G+  G  V +L + H + V+E LLG V+DGFGR+L++   +     + 
Sbjct  63   SKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY  122

Query  135  ATGRTQPVLGDAPPPTSRPRISQPLPTGLRAVDGLLTIGQGQRVGIFAGAGCGKTTLLAE  194
             +         +PP+  R  I+QPL TG+RA+D++ T G+GQRVGIF+++G GK+TLLA 
Sbjct  123  DA--------MPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAM  174

Query  195  LARNTPCDAIVFGLIGERGRELREFLDHELDDELRSRTVLVCSTSDRSSMeraraaftat  254
            L      D+ V+ LIGERGRE+REF+D  L +E R R V+V +TSDR+++ER RA F AT
Sbjct  175  LCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVAT  234

Query  255  aiaeayraeGRQVLLIIDSLTRFARAQREIGLALGEPQGRGGLPPSVYTLLPRLVERAGQ  314
            +IAE +R +G++V+L+ DSLTR+ARA REI+LA GE    G  PP+V++ LPRL+ER+G 
Sbjct  235  TIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM  294

Query  315  TEDGAITALYSVLIEQDSMNDPVADEVRSLIDGHIVLARRLAEQGHYPAIDVLASLSRTM  374
             E G+ITA+Y+VL+E D MN+P+ADEVRSL+DGHIVL+RRLAE+GHYPAIDVLA+LSR  
Sbjct  295  GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVF  354

Query  375  SNVVDTDHTRNAGGVRRLMAAYKQVEMLIRLGEYQPGHDVLTDSAVNAHAEITQFLRQSM  434
            + V   +H + A+ +RR +A Y++VE+LIR+GEYQ G D  TD A+++ ++I  FLRQS 
Sbjct  355  PVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

Query  435  RE  436
             E
Sbjct  415  DE  416

646) MDS_1852 in NC_015410


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1059),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 186/382 (49%), Positives = 270/382 (71%), Gaps = 3/382 (0%)

Query  67   AEVMGFSAGKIYLMPVGSLAGIAPGARVVPLPDAGRLPMGMTMLGRVLDGAGRALDGKGG  126
            AEV+G++++K  L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPSINPLNRDPISQPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+ +  ++ R+PI+QPL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYC  246
            M+    +A+  V+ LIGERGREV+EFID  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAVDIESSIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPA+D+ +++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVPPEQLKQAQRFKQLWSRYQQSRDLISVGAYVPGGDADTDLAIARQPIMAQYLR  426
            RV P V + E+ + A  +++  + YQ+   LI +G Y  G D+DTD AI   P +  +LR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QGLDESVGMPQSREQLAAVLGQ  448
            Q+ DE  G     E+L  +L +
Sbjct  412  QSKDEVCGPELLIEKLHQILTE  433

647) fliI in NC_007677


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1059),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 202/420 (49%), Positives = 283/420 (68%), Gaps = 7/420 (1%)

Query  20   RYGRVTSVVGLLVEASELDAAVGEMCRIHVAEGGETRTVRAEVVGVKESTTVLMPMEQTH  79
            R GR+  V + L++A   +  +GE+C I  +E        AEVVG++ S ++L P   T 
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE------LAEVVGINGSKALLSPFTSTA  74

Query  80   GLQAGCLIRPADEGMSVPVGPDLLGRVIDAGGRPIDGKGPLGTDAREPIHRDPPSPLDRP  139
            GL+ G  + +      VPVG  LLGRVID+ GRP+DG+  L    +   +  PP+++ R 
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQ  133

Query  140  LIDTPLSTGIRSIDAFLKMGKGQRTGIFAGSGVGKSTLLGMIARRAEADVNVIALIGERG  199
             I  PL TGIR+ID+    G GQR GIF+++GVGKSTLL+M+   ++AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  200  REVREFIVDNLGEEGLRRSVLVAVTGDEaamsrvkaasaamaiaEHFRDRGQDVLLMMDS  259
            REVREFI   L+EE  +R V+V  T+D +A+ RV+A   A +IAE FRD G+ V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  260  ITRVAQAQREIGLAVGEPPTRRGYPPSVFALLPRLLERAGPAEAGTITGIFTVLVEGDDM  319
            +TR A+A REI+LA GE +    YPP+VF+ LPRLLER+G +E G+IT+++TVLVEGDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  320  SEPISDAARGILDGHIVLSRELAEAGHYPAVDVLQSVSRVMPRVasleaeaaaqearell  379
            +EP++D  R++LDGHIVLSR LAE GHYPA+DVL ++SRV P V+S E    A   R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  380  saYEEVEDLISVGAYEEGSDPETDRAVEAYPALADFLQQpvdapppdpapSTQLRQLLDD  439
            + Y+EVE LI +G Y+ G D +TD+A+++YP +  FL+Q+ D          +L+Q+L +
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

648) fliI in NC_014032


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  283 bits (1060),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 202/420 (49%), Positives = 283/420 (68%), Gaps = 7/420 (1%)

Query  26   RYGRVTSVVGLLVEASELDAAVGEMCRIHVAEGGETRTVRAEVVGVKESTTVLMPMEQTH  85
            R GR+  V + L++A   +  +GE+C I  +E        AEVVG++ S ++L P   T 
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE------LAEVVGINGSKALLSPFTSTA  74

Query  86   GLQAGCLIRPADEGMSVPVGPDLLGRVIDAGGRPIDGKGPLGTDAREPIHRDPPSPLDRP  145
            GL+ G  + +      VPVG  LLGRVID+ GRP+DG+  L    +   +  PP+++ R 
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQ  133

Query  146  LIDTPLSTGIRSIDAFLKMGKGQRTGIFAGSGVGKSTLLGMIARRAEADVNVIALIGERG  205
             I  PL TGIR+ID+    G GQR GIF+++GVGKSTLL+M+   ++AD NV+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  206  REVREFIVDNLGEEGLRRSVLVAVTGDEaamsrvkaasaamaiaEHFRDRGQDVLLMMDS  265
            REVREFI   L+EE  +R V+V  T+D +A+ RV+A   A +IAE FRD G+ V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  266  ITRVAQAQREIGLAVGEPPTRRGYPPSVFALLPRLLERAGPAEAGTITGIFTVLVEGDDM  325
            +TR A+A REI+LA GE +    YPP+VF+ LPRLLER+G +E G+IT+++TVLVEGDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  326  SEPISDAARGILDGHIVLSRELAEAGHYPAVDVLQSVSRVMPRVasleaeaaaqearell  385
            +EP++D  R++LDGHIVLSR LAE GHYPA+DVL ++SRV P V+S E    A   R  L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  386  saYEEVEDLISVGAYEEGSDPETDRAVEAYPALADFLQQpvdapppdpapSTQLRQLLDD  445
            + Y+EVE LI +G Y+ G D +TD+A+++YP +  FL+Q+ D          +L+Q+L +
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

649) fliI in NC_016620


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  282 bits (1057),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 171/363 (48%), Positives = 257/363 (71%), Gaps = 5/363 (1%)

Query  62   LGEVVAINGHKCMAMPYDEISGINSETKVYLKDLTTTIKLSKNMLGRVIDFQGNPIDGKG  121
            L+EVV+ING K +  P+   +G++   +V        + ++  +LGRVID  G P+DG+ 
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE  113

Query  122  PITDIEESRSIYGTALNP-LERPPIKEPLDVGVHAVNCFMTAGKGQRMAIMAGSGVGKSV  180
             + ++   +  Y++   P + R PI +PL  G++A++   T G GQR++I +++GVGKS 
Sbjct  114  -LPEV--CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  181  TLGMIAQNSSADVNVIALIGERGREVLEFIESDLGPEGIKRSVVIVATSDTSPLIRMKAA  240
             L+M+ + + AD NV+ LIGERGREV EFI+  L+ E  KR V++VATSD ++L R++A 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  241  YVATTISEFFRDDNKDVLLMMDSITRFAMANREISLSAGEPPGQKGYTPSVFAQLPKLME  300
            +VATTI+EFFRD+ K V+L+ DS+TR+A A REI+L+AGE +    Y P+VF+ LP+L+E
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  301  RAGTKSNSGTITGIYTVLVEGGDMDEPIADAVRAIADGHIVLSRELASRNQFPAIDVLQS  360
            R+G  ++ G+IT++YTVLVEG+DM+EP+AD VR++ DGHIVLSR LA R ++PAIDVL +
Sbjct  291  RTG-MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  361  LSRVMNKVTTNEHKIVASHLRDLLSAYKENEDLINVGAYARGSNPKVDKALVIYDDLMAL  420
            LSRV   VT++EH+ +A+ LR  L+ Y+E E LI +G Y RG +   DKA+  Y D+ ++
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  421  LKQ  423
            L+Q
Sbjct  410  LRQ  412

650) hrcN in NC_010996


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  282 bits (1055),  Expect = 3e-77, Method: Compositional matrix adjust.
 Identities = 196/421 (47%), Positives = 291/421 (70%), Gaps = 12/421 (2%)

Query  20   QSGRVTSVSGLLVRALIPSVRIGELCELHEPGRGRIGLADVVGIDGETALLSLHGETRGI  79
            + GR+  VS+ L+ A +P+V +GELC +  PG     LA+VVGI+G  ALLS    T G+
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIK-PGEE---LAEVVGINGSKALLSPFTSTAGL  76

Query  80   SQRTEIVPTGREPAISVGNFLLGAIVDAHGNVLRPSANPAGEDARFLQPLYGQPVNPLSR  139
                ++++  R   ++VG+ LLG ++D+ G  L     P      + +++   P  ++ R
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY-DAM---PPPAMVR  132

Query  140  RPIRQPFTSGIAALDGLLTCGQGQRIGIFGAPGAGKSTLVSQIVANNKADVIVCALVGER  199
            +PI QP+ +GI A+D++ TCG+GQR+GIF+APG GKSTL++ +     AD  V  L+GER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  200  GREVGEFVAGNMPEGVPSNVTLVVATSDRPALERFKAVMTATAIAEYFREQGKHVLLVID  259
            GREV EF+   ++E       +VVATSDRPALER +A+  AT+IAE+FR++GK+V+L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  260  SVTRMARALREVGLAAGEPPVRRGFPPSVFAVLPQIFERAGNSANGMMTAFYTVLVEGEE  319
            S+TR ARA RE++LAAGE +V   +PP+VF+ LP+++ER+G + +G +TAFYTVLVEG++
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  320  QDDPIAEETRSLLDGHIVLSDKIAKAGNFPAIDVLASRSRTMSAVVSESHRQaadrlral  379
             ++P+A+E RSLLDGHIVLS ++A  G++PAIDVLA+ SR  + V S+ HRQ A  LR  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  380  lalYDEVELLIRVGEYRQGRDAAVDEAVAKHGLIQRFLFDGQGKPQPFGA--IVEALEEL  437
            LALY+EVELLIR+GEY++G D+  D A+     I  FL   Q+K +  G+  ++E L+++
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL--RQSKDEVCGPELLIEKLHQI  430

Query  438  V  438
            +
Sbjct  431  L  431

651) DND132_1089 in NC_016803


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  282 bits (1056),  Expect = 3e-77, Method: Compositional matrix adjust.
 Identities = 182/400 (46%), Positives = 274/400 (69%), Gaps = 9/400 (2%)

Query  16   CQTFGKVTKVVGLIAEGHGIKAPLGSVCYLLPSGHEPIPAEVVGFRDGACLFMPYSDMRG  75
            C+  G++  V + + ++      +G +C + P+ +    AEVVG+ ++  L+ P++   G
Sbjct  20   CR-WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAG  75

Query  76   IGPGSLIQNAATPPHVPVGPALLGRAVDAFGAPLDGKG--PIHAQTFAPLHREPPNPLER  133
            +  G  +       +VPVG ALLGR +D+FG PLDG+    +  + + ++   PP ++ R
Sbjct  76   LHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVR  132

Query  134  PRINQPLDVGIRSVNALLTLGKGQRVGIMAGSGVGKSTTLGMMARYTKADVNVIALVGER  193
              I QPL  GIR+++++ T G GQRVGI +++GVGKST L+M+     AD NV+ L+GER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  194  GREVVEFMERDLGPEGMARSVLVVATSDKSPLIRMRaayaatavaEYFRDQGKDVLLMMD  253
            GREV EF++  L+ E   R V+VVATSD+++L R+RA + AT++AE+FRD+GK V+L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  254  SVTRFAMAGREVGLAAGEPPTRGGYTPSVFAHLPQLLERAGKNRKGSITGVYTVLVDGDD  313
            S+TR+A A+RE++LAAGE +  G Y P+VF+ LP+LLER+G   KGSIT+ YTVLV+GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  314  FTEPIADSTRSILDGHIVLTRELADLGHYPAIDVLRSISRLRSDITTKEAQADGRALLRH  373
              EP+AD  RS+LDGHIVL+R LA+ GHYPAIDVL ++SR+ + +T+ E +  +  L R+
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  374  MATFKRVEDMVNIGAYQKGANPEVDKAINMVGPINRFLRQ  413
            +A ++ VE ++ IG YQ+G + + DKAI+    I  FLRQ
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

652) Aave_0463 in NC_008752


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  282 bits (1054),  Expect = 4e-77, Method: Compositional matrix adjust.
 Identities = 198/403 (50%), Positives = 300/403 (75%), Gaps = 7/403 (1%)

Query  26   RSGKVAEVIGTLMRVNGLDAKLGELCHVLDERGELLQAAEVVGFANGQSILSPFGSILGV  85
            R G++ +V +TL+     +  +GELC +    GE L  AEVVG+  ++++LSPF S  G+
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL--AEVVGINGSKALLSPFTSTAGL  76

Query  86   RGGSPVVGLGEVLSVPVGPRLLGRVIDSLGQPIDGKG-PLDCSETRPVFALPPTPMEREM  144
            + G  V++L     VPVG  LLGRVID++G+P+DG+  P  C       A+PP +M R+ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQP  134

Query  145  IEHPLPTGVKAIDGLITLGEGQRMGIFAPAGVGKSTLMGMLARGTQCDVSVIALigergr  204
            I +PL TG++AID++ T GEGQR+GIF+++GVGKSTL++ML  + + D +V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  205  evrefvefiLGEEGMARSVVVCATSDRSSSERakaahvatavaEYYRDQGLKVLLMMDSL  264
            EVREF++F L+EE   R V+V ATSDR++ ER +A  VAT++AE++RD+G +V+L+ DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  265  TRFARAQREIGLAAGEPPARRGFPPSVFAEIPRLLERAGMGARGSITALYTVLYEDESGN  324
            TR+ARA REI+LAAGE +    +PP+VF+ +PRLLER+GMG +GSITA+YTVL E++  N
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  325  DPISEEVRGILDGHMILSRKIAARNQYPAIDVLGSLSRVMSQIVPREHQQAGGRFRQLMA  384
            +P+++EVR++LDGH++LSR++A R +YPAIDVL++LSRV + + ++EH+Q ++ +R+ +A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  385  KYEEIEPLVQMGEYRPGNDPLADEAMEKHAAIRDFLNQSTSDL  427
             Y+E+E L+++GEY+ G D  +D A++  + I  FL QS  ++
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEV  417

653) CTL2C_679 in NC_015744


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  282 bits (1054),  Expect = 4e-77, Method: Compositional matrix adjust.
 Identities = 191/394 (49%), Positives = 282/394 (72%), Gaps = 10/394 (2%)

Query  2    LIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPSSEVMATGLP  61
            L++A +P+V +GE+C +K  G E  ++EVVG+  +  +LSP+   +G+  + +VMA    
Sbjct  32   LLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCGQQVMA----  84

Query  62   LHIRAgegllgrvlnglgNPIDTETKGPLENVDAIYPIFKA-PPDPLHRAKLRTILSTGV  120
            L+ R    +   +L  + + ++    G  E  +     + A PP ++ R  +   L TG+
Sbjct  85   LRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPITQPLMTGI  143

Query  121  RCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGREVREFIEN  180
            R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERGREVREFI+ 
Sbjct  144  RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERGREVREFIDF  202

Query  181  DLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALR  240
             L+EE  KR +IVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS+TR+ARA R
Sbjct  203  TLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAR  262

Query  241  EVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMNEPVADEVK  300
            E++LAAGE +  + Y P+VFS+LP+LLER+G ++KG+ITAFYTVLV GDDMNEP+ADEV+
Sbjct  263  EIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVR  322

Query  301  SILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLAKYKANEML  360
            S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  LA Y+  E+L
Sbjct  323  SLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELL  382

Query  361  IRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  394
            IRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  383  IRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

654) fliI in NC_020802


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  282 bits (1055),  Expect = 4e-77, Method: Compositional matrix adjust.
 Identities = 183/380 (49%), Positives = 275/380 (73%), Gaps = 5/380 (1%)

Query  43   VGSLCKVESQDGFIDAEVVGFSGERLFLMPSERLTGVLPGAKVIPQTHQQGIPVGMELLG  102
            +G LC + + + +  AEVVG++G + +L P    +G+  G +V++  +++ +PVG  LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVLdgigkpidgkgdiVTAQTSNYTHASINPLSRKAITEPLDVGIKAINALLTVGQGQRM  162
            RV+DG+G+P+DG+         +Y   +  ++ R++IT+PL  GI+AI+++ T G+GQR+
Sbjct  100  RVIDGFGRPLDGRELPEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  163  GLFAGSGVGKSVLLGMMTRGTNADVVVVGLIGERGREVKEFIEDILGEEGRKRAVVIAAP  222
            G+F+++GVGKS LL+M+  + +AD  V+ LIGERGREV+EFI+  L+EE RKR V++ A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  223  ADASPLMRLKGCETSLTIAEYFRDQGLNVLLLMDSLTRFAQAQREIALAIGEPPATKGYP  282
            +D ++L R+++   + TIAE+FRD+G  V+LL DSLTR+A+A REIALA GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  283  PSVFAKLPALVERAGNGNENQGSISAFFTVLTEGDDLQDPIADASRAILDGHIVLSRELA  342
            P+VF+ LP L+ER+G G  ++GSI+AF+TVL EGDD+++P+AD  R++LDGHIVLSR LA
Sbjct  279  PGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  343  DSGHFPAIDVGKSISRVMPMVTSEEHQTLARVLKQAYNLYQENKELITIGAYAKGSDPRI  402
            + GH+PAIDV  ++SRV P+VTS+EH+ LA +L++   LYQE   LI IG Y +G D   
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  403  DKAIIIRPKLDHFLQQGMKE  422
            DKAI   P +  FL+Q+  E
Sbjct  397  DKAIDTYPDICTFLRQSKDE  416

655) Rta_29820 in NC_015677


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1052),  Expect = 5e-77, Method: Compositional matrix adjust.
 Identities = 200/413 (49%), Positives = 300/413 (73%), Gaps = 9/413 (2%)

Query  15   LKYESV--LARTGKVFEVVGTLIRAVGLDVRIGELCELEDMRGRKIQRAEVVGFGKGGAV  72
            LKY +     R G++ +V +TL+ A   +V +GELC +    G  +  AEVVG+  + A+
Sbjct  11   LKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL--AEVVGINGSKAL  66

Query  73   LSPFGGLTGVSDSTRVVGTGKPLTVKVGPGLLGRVIGGLGDPIDGKGPIAGSEERMVFAD  132
            LSPF + +G+  + +V++  +   V VG +LLGRVI+G+G P+DG+        +  +  
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKDYDA  124

Query  133  -PPDPMSRAMIEHPLPTGVRIIDGLMTFGEGQRMGIFAPAGAGKSTLMGMLARGAQCDVS  191
             PP +M R  I +PL TG+R ID++ T GEGQR+GIF+++G GKSTL++ML  +++ D +
Sbjct  125  MPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN  184

Query  192  VIALigergrevrefvefiLGEEGMARSVVVCATSDRSSIERakaayvatavaEYFRDHG  251
            V+ LIGERGREVREF++F L+EE   R V+V ATSDR+++ER +A +VAT++AE+FRD+G
Sbjct  185  VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNG  244

Query  252  QKVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGATGSITALY  311
            ++V+L+ DSLTR+ARA REI+LAAGE +    +PP+VF+ LPRLLERTGMG  GSITA+Y
Sbjct  245  KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFY  304

Query  312  TVLVEDESGGDPIAEEVRGILDGHMILSRRIAAKNQYPAIDVLGSLSRVMTQVVPKEHAA  371
            TVLVE++   +P+A+EVR++LDGH++LSRR+A + +YPAIDVL++LSRV   V + EH  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  372  MASTLRSLMAKYDEVEMLLQVGEYKAGNDPLADAAVERIDHIRAFLSQATTDL  424
            +A+ LR  +A Y+EVE+L+++GEY+ G D  +D A++   +I +FL Q+  ++
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEV  417

656) B595_0044 in NC_018619


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1052),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 194/395 (50%), Positives = 283/395 (72%), Gaps = 12/395 (3%)

Query  2    LIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPSSEVIPTGMP  61
            L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  + +V    M+
Sbjct  32   LLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV----MA  84

Query  62   LYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHREKLRTILSTG  119
            L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+ +   L TG
Sbjct  85   LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPITQPLMTG  142

Query  120  VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIE  179
            +R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERGREVREFI+
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERGREVREFID  201

Query  180  GDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARAL  239
              L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADEV  299
            RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDMNEP+ADEV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  KSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEM  359
            +S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  LA Y+  E+
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  394
            LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

657) B598_0043 in NC_018620


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1052),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 194/395 (50%), Positives = 283/395 (72%), Gaps = 12/395 (3%)

Query  2    LIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPSSEVIPTGMP  61
            L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  + +V    M+
Sbjct  32   LLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV----MA  84

Query  62   LYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHREKLRTILSTG  119
            L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+ +   L TG
Sbjct  85   LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPITQPLMTG  142

Query  120  VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIE  179
            +R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERGREVREFI+
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERGREVREFID  201

Query  180  GDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARAL  239
              L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADEV  299
            RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDMNEP+ADEV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  KSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEM  359
            +S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  LA Y+  E+
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  394
            LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

658) B599_0043 in NC_018627


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1052),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 194/395 (50%), Positives = 283/395 (72%), Gaps = 12/395 (3%)

Query  2    LIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPSSEVIPTGMP  61
            L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  + +V    M+
Sbjct  32   LLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV----MA  84

Query  62   LYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHREKLRTILSTG  119
            L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+ +   L TG
Sbjct  85   LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPITQPLMTG  142

Query  120  VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIE  179
            +R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERGREVREFI+
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERGREVREFID  201

Query  180  GDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARAL  239
              L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADEV  299
            RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDMNEP+ADEV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  KSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEM  359
            +S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  LA Y+  E+
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  394
            LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

659) B603_0043 in NC_018624


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1052),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 194/395 (50%), Positives = 283/395 (72%), Gaps = 12/395 (3%)

Query  2    LIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPSSEVIPTGMP  61
            L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  + +V    M+
Sbjct  32   LLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV----MA  84

Query  62   LYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHREKLRTILSTG  119
            L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+ +   L TG
Sbjct  85   LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPITQPLMTG  142

Query  120  VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIE  179
            +R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERGREVREFI+
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERGREVREFID  201

Query  180  GDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARAL  239
              L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADEV  299
            RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDMNEP+ADEV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  KSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEM  359
            +S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  LA Y+  E+
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  394
            LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

660) B601_0041 in NC_018622


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1052),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 194/395 (50%), Positives = 283/395 (72%), Gaps = 12/395 (3%)

Query  2    LIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPSSEVIPTGMP  61
            L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  + +V    M+
Sbjct  32   LLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV----MA  84

Query  62   LYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHREKLRTILSTG  119
            L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+ +   L TG
Sbjct  85   LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPITQPLMTG  142

Query  120  VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIE  179
            +R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERGREVREFI+
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERGREVREFID  201

Query  180  GDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARAL  239
              L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADEV  299
            RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDMNEP+ADEV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  KSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEM  359
            +S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  LA Y+  E+
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  394
            LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

661) CPS0A_0042 in NC_017289


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1052),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 194/395 (50%), Positives = 283/395 (72%), Gaps = 12/395 (3%)

Query  2    LIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPSSEVIPTGMP  61
            L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  + +V    M+
Sbjct  32   LLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV----MA  84

Query  62   LYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHREKLRTILSTG  119
            L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+ +   L TG
Sbjct  85   LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPITQPLMTG  142

Query  120  VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIE  179
            +R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERGREVREFI+
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERGREVREFID  201

Query  180  GDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARAL  239
              L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADEV  299
            RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDMNEP+ADEV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  KSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEM  359
            +S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  LA Y+  E+
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  394
            LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

662) CPS0B_0042 in NC_017292


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1052),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 194/395 (50%), Positives = 283/395 (72%), Gaps = 12/395 (3%)

Query  2    LIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPSSEVIPTGMP  61
            L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  + +V    M+
Sbjct  32   LLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV----MA  84

Query  62   LYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHREKLRTILSTG  119
            L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+ +   L TG
Sbjct  85   LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPITQPLMTG  142

Query  120  VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIE  179
            +R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERGREVREFI+
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERGREVREFID  201

Query  180  GDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARAL  239
              L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADEV  299
            RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDMNEP+ADEV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  KSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEM  359
            +S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  LA Y+  E+
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  394
            LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

663) CPS0D_0040 in NC_017290


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1052),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 194/395 (50%), Positives = 283/395 (72%), Gaps = 12/395 (3%)

Query  2    LIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPSSEVIPTGMP  61
            L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  + +V    M+
Sbjct  32   LLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV----MA  84

Query  62   LYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHREKLRTILSTG  119
            L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+ +   L TG
Sbjct  85   LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPITQPLMTG  142

Query  120  VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIE  179
            +R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERGREVREFI+
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERGREVREFID  201

Query  180  GDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARAL  239
              L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADEV  299
            RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDMNEP+ADEV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  KSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEM  359
            +S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  LA Y+  E+
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  394
            LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

664) CPSIT_0040 in NC_015470


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1052),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 194/395 (50%), Positives = 283/395 (72%), Gaps = 12/395 (3%)

Query  2    LIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPSSEVIPTGMP  61
            L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  + +V    M+
Sbjct  32   LLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV----MA  84

Query  62   LYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHREKLRTILSTG  119
            L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+ +   L TG
Sbjct  85   LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPITQPLMTG  142

Query  120  VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIE  179
            +R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERGREVREFI+
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERGREVREFID  201

Query  180  GDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARAL  239
              L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADEV  299
            RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDMNEP+ADEV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  KSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEM  359
            +S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  LA Y+  E+
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  394
            LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

665) CPS0C_0041 in NC_017291


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1052),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 194/395 (50%), Positives = 283/395 (72%), Gaps = 12/395 (3%)

Query  2    LIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPSSEVIPTGMP  61
            L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  + +V    M+
Sbjct  32   LLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV----MA  84

Query  62   LYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHREKLRTILSTG  119
            L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+ +   L TG
Sbjct  85   LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPITQPLMTG  142

Query  120  VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIE  179
            +R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERGREVREFI+
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERGREVREFID  201

Query  180  GDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARAL  239
              L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADEV  299
            RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDMNEP+ADEV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  KSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEM  359
            +S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  LA Y+  E+
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  394
            LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

666) B711_0045 in NC_018625


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1052),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 194/395 (50%), Positives = 283/395 (72%), Gaps = 12/395 (3%)

Query  2    LIKAVVPNVRVGEVCLVKRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPSSEVIPTGMP  61
            L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  + +V    M+
Sbjct  32   LLNAWLPGVFMGELCCIKP-GEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV----MA  84

Query  62   LYIRAgngllgrvlnglgEPIDSEIKGP-LVDV-NETYPVFRAPPDPLHREKLRTILSTG  119
            L  R    +   +L  + + ++  + G  L +V    Y     PP ++ R+ +   L TG
Sbjct  85   LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPITQPLMTG  142

Query  120  VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIE  179
            +R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERGREVREFI+
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERGREVREFID  201

Query  180  GDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARAL  239
              L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADEV  299
            RE++LAAGE +  G Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDMNEP+ADEV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  KSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEM  359
            +S+LDGH+VLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  LA Y+  E+
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  394
            LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

667) fliI in NC_020912


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 185/362 (52%), Positives = 258/362 (72%), Gaps = 3/362 (0%)

Query  67   AEVMGFSGSKVYLMPVGSLAGIAPGARVVPLPDTGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++GSK  L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MRAEDWVPMDGPTINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTRADIIVVGLIGERGREVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYC  246
            M+     AD  V+ LIGERGREV+EFID  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVEAEHLRDAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIARFPVMRQFLR  426
            RV P V   EH + A  +++  + YQ+   LI +G Y  G D +TD AI  +P +  FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QG  428
            Q+
Sbjct  412  QS  413

668) fliI in NC_018080


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 185/362 (52%), Positives = 258/362 (72%), Gaps = 3/362 (0%)

Query  67   AEVMGFSGSKVYLMPVGSLAGIAPGARVVPLPDTGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++GSK  L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MRAEDWVPMDGPTINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTRADIIVVGLIGERGREVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYC  246
            M+     AD  V+ LIGERGREV+EFID  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVEAEHLRDAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIARFPVMRQFLR  426
            RV P V   EH + A  +++  + YQ+   LI +G Y  G D +TD AI  +P +  FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QG  428
            Q+
Sbjct  412  QS  413

669) fliI in NC_011770


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 185/362 (52%), Positives = 258/362 (72%), Gaps = 3/362 (0%)

Query  67   AEVMGFSGSKVYLMPVGSLAGIAPGARVVPLPDTGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++GSK  L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MRAEDWVPMDGPTINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTRADIIVVGLIGERGREVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYC  246
            M+     AD  V+ LIGERGREV+EFID  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVEAEHLRDAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIARFPVMRQFLR  426
            RV P V   EH + A  +++  + YQ+   LI +G Y  G D +TD AI  +P +  FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QG  428
            Q+
Sbjct  412  QS  413

670) fliI in NC_017548


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 185/362 (52%), Positives = 258/362 (72%), Gaps = 3/362 (0%)

Query  67   AEVMGFSGSKVYLMPVGSLAGIAPGARVVPLPDTGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++GSK  L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MRAEDWVPMDGPTINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTRADIIVVGLIGERGREVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYC  246
            M+     AD  V+ LIGERGREV+EFID  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVEAEHLRDAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIARFPVMRQFLR  426
            RV P V   EH + A  +++  + YQ+   LI +G Y  G D +TD AI  +P +  FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QG  428
            Q+
Sbjct  412  QS  413

671) fliI in NC_017549


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 185/362 (52%), Positives = 258/362 (72%), Gaps = 3/362 (0%)

Query  67   AEVMGFSGSKVYLMPVGSLAGIAPGARVVPLPDTGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++GSK  L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MRAEDWVPMDGPTINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTRADIIVVGLIGERGREVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYC  246
            M+     AD  V+ LIGERGREV+EFID  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVEAEHLRDAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIARFPVMRQFLR  426
            RV P V   EH + A  +++  + YQ+   LI +G Y  G D +TD AI  +P +  FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QG  428
            Q+
Sbjct  412  QS  413

672) fliI in NC_002516


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 185/362 (52%), Positives = 258/362 (72%), Gaps = 3/362 (0%)

Query  67   AEVMGFSGSKVYLMPVGSLAGIAPGARVVPLPDTGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++GSK  L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MRAEDWVPMDGPTINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTRADIIVVGLIGERGREVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYC  246
            M+     AD  V+ LIGERGREV+EFID  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVEAEHLRDAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIARFPVMRQFLR  426
            RV P V   EH + A  +++  + YQ+   LI +G Y  G D +TD AI  +P +  FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QG  428
            Q+
Sbjct  412  QS  413

673) fliI in NC_021577


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 185/362 (52%), Positives = 258/362 (72%), Gaps = 3/362 (0%)

Query  67   AEVMGFSGSKVYLMPVGSLAGIAPGARVVPLPDTGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++GSK  L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MRAEDWVPMDGPTINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTRADIIVVGLIGERGREVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYC  246
            M+     AD  V+ LIGERGREV+EFID  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVEAEHLRDAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIARFPVMRQFLR  426
            RV P V   EH + A  +++  + YQ+   LI +G Y  G D +TD AI  +P +  FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QG  428
            Q+
Sbjct  412  QS  413

674) fliI in NC_008463


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 185/362 (52%), Positives = 258/362 (72%), Gaps = 3/362 (0%)

Query  67   AEVMGFSGSKVYLMPVGSLAGIAPGARVVPLPDTGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++GSK  L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MRAEDWVPMDGPTINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTRADIIVVGLIGERGREVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYC  246
            M+     AD  V+ LIGERGREV+EFID  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVEAEHLRDAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIARFPVMRQFLR  426
            RV P V   EH + A  +++  + YQ+   LI +G Y  G D +TD AI  +P +  FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QG  428
            Q+
Sbjct  412  QS  413

675) ACPL_7909 in NC_017803


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 164/327 (51%), Positives = 238/327 (73%), Gaps = 0/327 (0%)

Query  91   RIPVGPDLRGRILDGLGRPMDGGPPLRGELVGIEQAPPSAMERQLVDRPMSLGVRVLDTL  150
            ++PVG  L GR++DG+GRP+DG         + +  PP+AM RQ + +P+  G+R +D++
Sbjct  90   QVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSV  149

Query  151  VPCGRGQRIGIFAGSGVGKSTLMSMITRGTSAELNVVALVGERGREVREFIEHDLGPEGL  210
              CG GQR+GIF+++GVGKSTL++M+  +  A+ NV+ L+GERGREVREFI+  L+ E  
Sbjct  150  ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETR  209

Query  211  ARSVVVIATSDTPPLVRLRAGSVATRIAEYYRDEGADVLLMMDSVTRAAMAQREVGLSVG  270
             R V+V+ATSD P+L R+RA  VAT IAE++RD+G  V+L+ DS+TR A A RE++L+ G
Sbjct  210  KRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAG  269

Query  271  EPPATRGYPPSVFAMLASLLERAGPGARGSITGLYTVLVEGDDHNEPIADAARSILDGHI  330
            E + +  YPP+VF+ L+ LLER+G G +GSIT++YTVLVEGDD NEP+AD  RS+LDGHI
Sbjct  270  ETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  331  VLDRKLATAGHFPSIQALDSISRVANKITTREQRADATELRRLMAAHRDVRELVEIGAYV  390
            VL R+LA  GH+P+I+ L ++SRV   +T++E+R  A+ LRR +A  ++V  L+ IG Y 
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  391  PGTNPEADRANAAWPRISAFLRQDIDE  417
             G + ++D+A  + P I +FLRQ  DE
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKDE  416

676) fliI in NC_008027


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 188/371 (51%), Positives = 262/371 (71%), Gaps = 9/371 (2%)

Query  67   AEVMGFSGDKVFLMPVGSIAGLAPGARVVPLDDSGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++G K +L P  S AGL  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPVINPLNRDPISQPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI+QPL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTCFTEAEIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +A+  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATRGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             GE   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVDPDHLRQAQKFKQLWSRLSQSRD---LISVGAYVAGGDVETDLAIALQPKLVD  423
            RV P V   +H RQ   +  L+ RL+  ++   LI +G Y  G D +TD AI   P +  
Sbjct  352  RVFPVVTSHEH-RQLAAI--LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  424  FLRQGLDENVG  434
            FLRQ+ DE  G
Sbjct  409  FLRQSKDEVCG  419

677) Psefu_1925 in NC_015556


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 183/362 (51%), Positives = 260/362 (72%), Gaps = 3/362 (0%)

Query  67   AEVMGFSSGKIYLMPVGSLAGIAPGARVVPLPDTGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++++K  L P  S AG+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPTINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIDEILGEEGIKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +A+  V+ LIGERGREV+EFID  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPRLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LPRL+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NAEAGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             +E   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVSPEHMRNAQRFKQLWSRYQQSRDLISVGAYVPGGDADTDLAIVRQPVMVRYLR  426
            RV P V S EH + A  +++  + YQ+   LI +G Y  G D+DTD AI   P +  +LR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QA  428
            Q+
Sbjct  412  QS  413

678) RHE_PD00057 in NC_004041


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 196/421 (47%), Positives = 292/421 (70%), Gaps = 12/421 (2%)

Query  20   QSGRVTSVSGLLVRALIPSVRIGELCELHEPGRGRIGLADVVGIDGETALLSLHGETRGI  79
            + GR+  VS+ L+ A +P+V +GELC +  PG     LA+VVGI+G  ALLS    T G+
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIK-PGEE---LAEVVGINGSKALLSPFTSTAGL  76

Query  80   SQRTEIVPTGREPAISVGNFLLGAVVDAHGNVLRPSANPAGDDARFLQPLYGQPVNPLSR  139
                ++++  R   ++VG+ LLG V+D+ G  L     P      + +++   P  ++ R
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY-DAM---PPPAMVR  132

Query  140  RPIRQPFTSGIAALDGLLTCGQGQRIGIFGAPGAGKSTLVSQIVANNKADVIVCALVGER  199
            +PI QP+ +GI A+D++ TCG+GQR+GIF+APG GKSTL++ +     AD  V  L+GER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  200  GREVGEFVADNMPEGVASNVALVLATSDRPALERFKAVMTATAIAEYFREQGKHVLLVID  259
            GREV EF+   ++E       +V+ATSDRPALER +A+  AT+IAE+FR++GK+V+L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  260  SVTRMARALREVGLAAGEPPVRRGFPPSVFAVLPQIFERAGNSANGTMTAFYTVLVEGEE  319
            S+TR ARA RE++LAAGE +V   +PP+VF+ LP+++ER+G + +G++TAFYTVLVEG++
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  320  QDDPIAEETRSLLDGHIVLSDKIARAGNFPAIDVLASRSRTMSAVVSESHRQaadrlral  379
             ++P+A+E RSLLDGHIVLS ++A  G++PAIDVLA+ SR  + V S+ HRQ A  LR  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  380  lalYDEVELLIRVGEYRQGRDAAVDEAVAKHGLIQRFLFDGQGKPQPFGA--IVEALEEL  437
            LALY+EVELLIR+GEY++G D+  D A+     I  FL   Q+K +  G+  ++E L+++
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL--RQSKDEVCGPELLIEKLHQI  430

Query  438  V  438
            +
Sbjct  431  L  431

679) TOPB45_0063 in NC_015682


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 182/396 (46%), Positives = 275/396 (70%), Gaps = 7/396 (1%)

Query  42   VGDLCKIEGQSTNLIAEVIGFKDNKLLLTALGDIKGIEVGAKVFPIGSSYA-PVGEDFLG  100
            +G+LC I  ++ + +AEV+G++++K LL+++    G++ G +V ++      PVGE +LG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  101  RIVNALGEPLDNKRKPKISDFYPLYGE-PLKPLERAPIKEILDVGIKAINALLTIGRGQR  159
            R+++++G PLD +  P +      Y+  P  ++ R PI + L  GI+AI+++ T G GQR
Sbjct  100  RVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  160  VAIMAGSGVGKSTLLGMIARYTSADVNVIALIGERGREVREFIERDLKEDGLKKSVVVVA  219
            V+I +++GVGKSTLL+M+     AD NV+ LIGERGREVREFI+  L E+  K+ V+VVA
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  220  TSDEAPSIRIRAAYYATSLAEYFRDKGYKVLLLMDSLTRFCMAGREIGLASGEPPTARGY  279
            TSD ++  R+RA + AT++AE+FRD+G +V+LL DSLTR+  A+REI+LA+GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  280  TPSVFAILPKLLERAGPKIGAGDITGIYNVLVEGDDFNDPIADSVRSIVDGHIVLSRDLA  339
             P+VF+ LP+LLER+G     G IT++Y VLVEGDD N+P+AD VRS++DGHIVLSR LA
Sbjct  278  PPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  340  HEGHYPPIDILASISRVMRDIVPKEHLDLAYQTIAILATYKKAEDLINIGAYVKGSNPDI  399
            + GHYP+ID+LA++SRV   + + EH +LA      LA Y+  E LI IG Y +G + D 
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  400  DRAISLIGDLKNFLKQPVEEKYSLEDSVNLLKEIIN  435
            D+AI    D+  FL+Q+ +E  + E  ++ L +I+ 
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

680) Spica_1667 in NC_015732


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 8e-77, Method: Compositional matrix adjust.
 Identities = 188/399 (48%), Positives = 285/399 (72%), Gaps = 5/399 (1%)

Query  25   GHITKVQGLLIESRGPQAIIGEVCRIYAPKGRGVIRAEVVGLRGETVQLMAYDETTGIEV  84
            G+I  V + L++++ P  ++GE+C I      G   AEVVG+ G    L ++  T+G++ 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI----KPGEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  85   GNRVVSTGELLSIPVSTKLLGRVLDALGKPTDGKGDIEapqyypaqadppnpLQRKRITE  144
            G++V++      +PV+  LLGRV+D++G+P DG+ ++        +A PP ++ R+ IT+
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  145  RIVTGVRAIDGLLPIGKGQRMGIFAGSGVGKSTLLGMIARNTSADVNVVALIGERGREVN  204
             ++TG+RAID++   G GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGERGREV 
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  205  DFIANDLGPEGLarsvivvspssapplsrlrGAYVATAVAEYFRDQGLDVMLLFDSVTRF  264
            +FI   L+ E   R VIVV+ S  P+L R+R+ +VAT++AE+FRD+G  V+LL DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  265  ARAQREIGLAIGEPPATRGYPPSVFDSMPKLLERCGTSDKGTITGFYTILVDGDDMDEPI  324
            ARA REI+LA GE + +  YPP+VF ++P+LLER G ++KG+IT+FYT+LV+GDDM+EP+
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPL  317

Query  325  ADTVRGILDGHMVLSRRLAERYHYPAIDILSSVSRLAPVVAGPVTKKAGGYIRRLMAVYA  384
            AD VR++LDGH+VLSRRLAER HYPAID+L+++SR+ PVV++   ++ ++ +RR +A+Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  385  EAEDLIDVGAYKPGSNPAIDEAIAKKSAIDNFLIQAVEE  423
            E E LI +G Y+ G +   D AI   + I  FL Q+ +E
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

681) yscN in NC_017030


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 8e-77, Method: Compositional matrix adjust.
 Identities = 190/418 (46%), Positives = 286/418 (69%), Gaps = 7/418 (1%)

Query  21   RGRVTELTGLVIKASVPNVRIGELVLVKNRQRGLMKSEVVGFVGDEVMLMPLGELYGIGP  80
            +GR+ ++++ +++A +P V +GEL  +K    G   +EVVG+ G   +L P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKP---GEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  81   DSECIPTGRPLTIKCGDGLLGRVLNGIGEPMDGMPLEGENLVDWPV-DRDCPDPFTRQRI  139
            + + ++  R   +  G++LLGRV++G+G P+DG  L     V W   D   P +  RQ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE---VCWKDYDAMPPPAMVRQPI  135

Query  140  ERPLPLGVRCIDGLLTVGEGQRVGLFAGSGVGKSTLMGQIARNTQADLSVVALIGERGRE  199
             +PL  G+R ID++ T GEGQRVG+F+++GVGKSTL++ +    +AD +V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  200  VREFIEDAMGEEGMKRAVLVCATSDQPALVRLRAAYVATAIAEYFRERGGNVLFMLDTVT  259
            VREFI+ +++EE  KR V+V ATSD+PAL R+RA +VAT+IAE+FR+ G  V+++ D++T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  260  RLARSQRDIGLAIGEPPARQGYPPSVFSMLPRILERTGNSAKGKCTAIYTCLVAGGDMED  319
            R AR+ R+I+LA GE +    YPP+VFS LPR+LERTG + KG  TA+YT LV G+DM++
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  320  PIADEVRGILDGHFILNRELGARNQWPAMDVLQSLSRVMSGIVSKEHKKAAGKLRETLAT  379
            P+ADEVR++LDGH++L+R L+ R + PA+DVL +LSRV + + S EH++ A+ LR  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YEKQRDLILLGAYQAGADPRTDYAIEKYDAIIDFLKQDTHSNSPYEETVEQLINLFAE  437
            Y+    LI +G YQ G D  TD AI+ Y  I  FL+Q  +     E  +E+L ++++E
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

682) fliI in NC_014355


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  281 bits (1051),  Expect = 8e-77, Method: Compositional matrix adjust.
 Identities = 181/415 (44%), Positives = 274/415 (67%), Gaps = 14/415 (3%)

Query  17   GRVAQAVGIVIEASGPFTSVGEVCEITREGGHGAVMAEVVGFREDRVLLMPLGEMQGIGP  76
            GR+ +  + +++A  P   +GE+C I      G  +AEVVG+   + LL P+    G+  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK----PGEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  77   GSRVVMKGHVASVPVGPQMLGRI---FdglghpldglpplRTDVQVPLYAP-PLNPLHRA  132
            G +V+   +   VPVG  +LGR+   F+   +  +     + D     Y + P  ++ R 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD-----YDAMPPPAMVRQ  133

Query  133  RITQPVDLGIRAINALLTCGQGQKIGVFAGSGVGKSVLLGMISRYTQADVRVIALVGERG  192
             ITQP+  GIRAI+++ TCG+GQ++G+F+++GVGKS LL+M+    +AD  V+ L+GERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  193  REVKEFLERDLTPEARARSIVVVATSDQPPLVRIRGALVATAIAEYFRDCGKHVLLMMDS  252
            REV+EF++  L+ E+R R ++VVATSD+P+L R+R+ +VAT+IAE+FRD GK+V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  253  LSRLAYSQREVGLAIGEPPTTKGYTPSVFAVLPKLLERVGPAQSGGSITGLYTVLVDGDD  312
            L+R A + RE++LA GE + +  Y P+VF+ LP+LLER G ++  GSIT++YTVLV+GDD
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDD  312

Query  313  LNDPVADAVRSILDGHIVLSRELAARNHFPAIDILQSTSRVMRDIVTPAHYAAGRLVLER  372
            +N+P+AD VRS+LDGHIVLSR LA R H+PAID+L + SRV   + +  H   + ++  R
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  373  TALYRRSEDLITLGAYKPGTSKDLDKAVSAHEGITAFLRQETKQSVGLSQSIDAL  427
             ALY+  E LI +G Y+ G   D DKA+ +  +I +FLRQ   +  G    I+ L
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

683) AciPR4_1815 in NC_014963


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  280 bits (1047),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 196/401 (49%), Positives = 284/401 (71%), Gaps = 5/401 (1%)

Query  17   RWYGRVVEATAQTISSDGPSCSVGEACEIVDSKGGYHAAEVIGFRGSHLISMPLSSSRGI  76
            RW GR+ + +A  +++  P+  +GE C I   K G + AEV+G+ GS  +  P++S+ G+
Sbjct  21   RW-GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGL  76

Query  77   RFGDRVMTTGEVPSLGVGEDCLGRVLDARGRPIDERQAPRVETFRPLDGDLPMAMHRVPI  136
            + G++VM+      + VGE  LGRV+D+ GRP+D R+ P V   +  D+  P AM R PI
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV-CWKDYDAMPPPAMVRQPI  135

Query  137  QTPLATGVRVLDAMMTVGRGQRVGIFGGSGVGKSTLIGMMTRNTSADLTIVGLVGERGRE  196
              PL TG+R +D++ T G GQRVGIF+++GVGKSTL++M+     AD  ++ L+GERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  197  VREFLEDSLGEKGRRRSVTVVSTSDESPlmrmraalaattlaESYAAKGKHVLLVLDSLT  256
            VREF++ +L+E  R+R V VV+TSD ++L R+RA + ATT+AE +  +GK+V+L+ DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  257  RYAMAAREVGLAAGEPAATKGYTPSVFAKMARLVERAGNFGTGSMTAFYTVLMEGDDQQD  316
            RYA AARE++LAAGE A +  Y P+VF+ ++RL+ER+G    GS+TAFYTVL+EGDD ++
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  317  PLVDAARSLLDGHIVLSREMASAGIYPPVHVLDSLSRLMPAVISAEHRQDAAKIRRTMAT  376
            PL D  RSLLDGHIVLSR +A  G YP+++VL +LSR+ P V S EHRQ AA +RR +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  377  YARSEDMVRLGMYKSGMDAELDHAIRMHPRIQTFFQQTSEE  417
            Y   E ++R+G Y+ G+D++ D AI   P I TF++Q+ +E
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

684) ECBG_01249 in NC_020995


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  280 bits (1049),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 191/404 (48%), Positives = 283/404 (71%), Gaps = 7/404 (1%)

Query  20   FTTYGKVSEVVGLLIKVEGLAVFIGEICEVALQNKTHTALAEVVGFVKKTVLLMPLDQLE  79
            +   G++ +V + L++    +VF+GE+C +    K    LAEVVG+     LL P+    
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEELAEVVGINGSKALLSPFTSTA  74

Query  80   GIGPGCLVRPTGKSLTVKIddtllghtldglgRPLD-MALELESAPEYPVSQDSPDPFRR  138
            G+  G  V +  +   V ++++LLG+ +DG+GRPLD   L      +Y     +P +  R
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVR  132

Query  139  QKIAEIMPTGVRAIDGLLTVGLGQRIGIFAGSGVGKSTLLGMLARYCEADVIVIGLIGER  198
            Q I++ + TG+RAID++ T G GQR+GIF+++GVGKSTLL+ML    +AD  V+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  199  GREVKEFIENDLGPEGYRKSVVVCATSDMPPLVRLKGAHVATAIAEYYRDQGKKVVLMMD  258
            GREV+EFI+  L+ E  ++ V+V ATSD P+L R+++  VAT+IAE++RD+GK+VVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  259  SVTRFAMAQREIGLSTGEPPTTKGYTPSVFTALPKLLERSGMSDKGSITAFYTVLVEGDD  318
            S+TR+A A REI+L++GE + +  Y P+VF+ALP+LLER+GM++KGSITAFYTVLVEGDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  319  MNEPIADAVRGILDGHILLSRKIAAQNHYPAIDIQNSLSRLMKTLVSEEQHKHAGELKEN  378
            MNEP+AD VR++LDGHI+LSR++A + HYPAID+  +LSR+   + S+E+++ A+ L+  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  379  MAVYAEAKDLIDIGAYKSGSNALTDQAIALHHPILRFLQQKVDE  422
            +A+Y E   LI IG Y+ G ++ TD+AI     I  FL+Q  DE
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

685) Dalk_0670 in NC_011768


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  280 bits (1048),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 177/400 (45%), Positives = 275/400 (69%), Gaps = 7/400 (1%)

Query  20   GKVDQVVGLIVEGYGPQMSVGAVCDLVTTQGRRIPAEVVGFKEKRMLLMPYGEMQGIQLG  79
            G++++V + ++++  P + +G +C +   +     AEVVG++  + LL P+    G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  80   CRIVPRQQQPLAPVGDAYLGRVIDGLGQPMDDKG-PIAATDMYPLYADVVNALHRRSVNQ  138
             ++++ +++   PVG+A LGRVIDG+G+P+D++  P      Y   A    A+ R+++ Q
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPITQ  137

Query  139  VSDVGVRVINSFITVGQGQRVAIMAGSGVGKSVLMGMISRHMASDVCIVALIGERGREVK  198
                G+R I+S  T G+GQRV+I +++GVGKS L++M+     +D  ++ LIGERGREV+
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  199  DFVDEILGPDGMGRSIVVAATSDTSPLVRMRGAYLATTLAEYFRDQGKNVILMMDSVTRF  258
            +F+D  L+ +   R ++V ATSD ++L R+R+ ++ATT+AE+FRD+GK V+L+ DS+TR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  259  AMSSRDVGLAAGEPPTVKGYTPSFFVKLPKLLERAGSVQGKGSITGIYTVLVEGDDMNDP  318
            A ++R+++LAAGE +    Y P+ F  LP+LLER+G +  KGSIT++YTVLVEGDDMN+P
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMNEP  316

Query  319  VGDAVRSIVDGHIVLSRKLANQGHYPAVDVLASVSRVMRATVSGEHTRMAQRFREVLAAY  378
            ++D VRS++DGHIVLSR+LA++GHYPA+DVLA++SRV     S EH ++A  +R  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  379  QNVEDLISIGAYVDGSDPDVDYAKSMIGKMKQFLRQDMME  418
            Q+VE LI IG Y  G D D D A      +  FLRQ   E
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

686) VCLMA_A1863 in NC_017270


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  280 bits (1047),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 178/398 (45%), Positives = 273/398 (69%), Gaps = 9/398 (2%)

Query  43   VGSLCKVETMNGEMEAEVVGFSGDNLFLMPSEQIIGVLPGAKVTPITTESGLPVGMELLG  102
            +G LC +    GE  AEVVG++G + +L P     G+  G +V ++     +PVG  LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTDQRASLNAMPINPLARKPINEPLDVGIKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +   +AMP  ++ R+PI +PL  GI+AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGVDGRQRSVVVA  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+ + R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  APADSSPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTDEHLLMSKAVRQILSVCRKNQDLVSIGAYKPGTDK  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDAAFTLKPKLDQYLQQAMKETVPYDMCVNMLRHVLS  438
              D A+   P +  +L+Q+  E    ++ ++ L+++L+
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

687) B602_0041 in NC_018623


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  280 bits (1049),  Expect = 9e-77, Method: Compositional matrix adjust.
 Identities = 193/395 (49%), Positives = 283/395 (72%), Gaps = 12/395 (3%)

Query  2    LIKAVVPNVRVGEVCLVKRHGMEPLVTEVVGFTQNFAFLSPLGELTGVSPSSEVIPTGLP  61
            L++A +P V +GE+C +K  G E  ++EVVG+  + A+LSP+   +G+  + +V    ++
Sbjct  32   LLNAWLPGVFMGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV----MA  84

Query  62   LHIRAgngllgrvlnglgEPIDSETKGP-LVDV-NETYPIFRAPPDPLHREKLRTILSTG  119
            L+ R    +   +L  + + ++    G  L +V    Y     PP ++ R+ +   L TG
Sbjct  85   LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPITQPLMTG  142

Query  120  VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIE  179
            +R ID++ T + GQR+GIF+++GVGKS+LL+M+  NA +AD NV+ LIGERGREVREFI+
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-NAPDADSNVLVLIGERGREVREFID  201

Query  180  GDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARAL  239
              L+EE  KR VIVV+TSD+++  R+ A +V+T+IAE+FRD+GK VVL+ DS+TR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  240  REVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADEV  299
            RE++LAAGE +  + Y P+VFS+LPRLLER+G ++KG+ITAFYTVLV GDDMNEP+ADEV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  300  KSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEM  359
            +S+LDGHIVLS  LA+  HYPAIDVLA++SR++  + ++E+R++ +  R  LA Y+  E+
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  360  LIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHE  394
            LIRIGEY+RG D + D AID    +  FL+Q  +E
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

688) MYSTI_02833 in NC_020126


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  280 bits (1049),  Expect = 9e-77, Method: Compositional matrix adjust.
 Identities = 200/418 (48%), Positives = 291/418 (70%), Gaps = 7/418 (1%)

Query  21   RGRVTELTGLIIKASVPNVRVGELVLIKSRSRGSVKAEVVGFQGDEVMLMPLGELYGIGP  80
            +GR+ ++++ +++A +P V +GEL  IK+   G   AEVVG++G   +L P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKP---GEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  81   DSEVIPTGKPLSIKCGEALLGRVLNGIGEPMDGSALPDEGLIDWSV-DRDCPDPFTRQRI  139
            + +V++  +   +  GEALLGRV++G+G P+DG  LP+   + W   D   P +  RQ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE---VCWKDYDAMPPPAMVRQPI  135

Query  140  ERPLPLGVRCIDGLLTVGEGQRVGLFAGSGVGKSTLMGQIARNTQADLCVVALIGERGRE  199
             +PL  G+R ID++ T GEGQRVG+F+++GVGKSTL++ +    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  200  VREFIEDAMGEEGMKRSVLVCATSDQPSLVRLRAAYVATAIAEYFRERGGNVLFMLDTVT  259
            VREFI+ +++EE  KR V+V ATSD+P+L R+RA +VAT+IAE+FR+ G  V+++ D++T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  260  RLARAQREIGLAVGEPPARQGYPPSVFSMLPRILERTGNSAKGKCTAIYTCLVAGGDMEE  319
            R ARA REI+LA GE +    YPP+VFS LPR+LERTG + KG  TA+YT LV G+DM+E
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  320  PIADEVRGILDGHFILNRALGERNQWPAMDVLASLSRVMSGIVSKEHKKAAGKLRETLAT  379
            P+ADEVR++LDGH++L+R L+ER + PA+DVLA+LSRV + + S EH++ A+ LR  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  YEKQRDLILLGAYQYGTDPRTdyaidkydaiidFLKQDTHSNSGFEETVEQLVALFEE  437
            Y+    LI +G YQ G D  TD AID Y  I  FL+Q  +   G E  +E+L  ++ E
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

689) Metme_2953 in NC_015572


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  279 bits (1045),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 191/398 (48%), Positives = 272/398 (69%), Gaps = 6/398 (1%)

Query  51   IGSLCQVITKSGKSIGAEVVGFSGGRLFLMPTGDTQGLDPGCRVVPQGKNSLASVGFGLL  110
            +G LC +  K+G  + AEVVG++G++ +L P   T GL+ G +V++  +    +VG +LL
Sbjct  42   MGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  111  GRVIDGAGKPLDSKGPLETDAKISLAGTTINPLARKPIREALDVGVRAINSVLSVGRGQR  170
            GRVIDG G+PLD++  L         +    ++ R+PI ++L  G+RAI+SV + G GQR
Sbjct  99   GRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  171  MGLFAGTGVGKSVLLGMMTKFTTADVVVVGLIGERGREVNEFVLKILGEEGLRRAVVVAS  230
            +G+F++ GVGKS LL+M+ +   AD  V+ LIGERGREV EF+   L+EE  +R V+V +
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  231  PADDSPLMRVHGALRATCIAEYFRDQGLDVLLLMDSLTRYAQAYREIALAIDEPPATKGY  290
             +D ++L RV++ + AT IAE+FRD+G  V+LL DSLTRYA+A REIALA +E + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  291  PPSVFAKLPQLVERAGNGDVGGGSITAFYTVLAEGDDTNDPIADAARGVLDGHVVLSRAL  350
            PP+VF+ LP+L+ER+G G+   GSITAFYTVL EGDD N+P+AD  R++LDGH+VLSR L
Sbjct  278  PPGVFSALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  351  GESGHYPAIDIEASISRVMPDIVEAEHLQMARELRRLYSTYQQNRDLISVGAYRSGSDPR  410
            +E GHYPAID+ A++SRV P +   EH Q+A  LRR  + YQ+   LI +G Y+ G D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  411  IDKAIAKNPAILEFLQQNMDEAVDMSRSLTELTQLLAE  448
             DKAI   P I  FL+Q+ DE  +    +  L Q+L+E
Sbjct  396  TDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

690) Dde_0350 in NC_007519


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  279 bits (1043),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 180/381 (48%), Positives = 263/381 (70%), Gaps = 7/381 (1%)

Query  39   LGAVCHIIPEDGSAPLPAEVVGFRDGNILFMPYGDMRGVQSGSLIRNTSMPPLFPVGESM  98
            +G +C I P +  A    EVVG+ +++ L+ P+    G++ G  +         PVGE++
Sbjct  42   MGELCCIKPGEELA----EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  99   LGRAFDAFGAPMDGSTMPPVAGHNPIY-AQPPNPLSRPRIDDPLDVGVRCINSLITLGKG  157
            LGR +D+FG P+DG  +P V   +  Y A PP ++ R  I +PL  G+R I+S+ T G G
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKD--YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  158  QRVGIMAGSGVGKSTLMGMMARYTSADVNVIALIGERGREVVEFMEKDLGPEGMARSVLI  217
            QRVGI +++GVGKSTL++M+     AD NV+ LIGERGREV EF++  L+ E   R V++
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  218  IATSDQSPLVRMRaayaatavaEFFRDQGKDVLLMMDSVTRFAMAAREVGLAVGEPPTTK  277
            +ATSD+++L R+RA + AT++AEFFRD+GK V+L+ DS+TR+A AARE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  278  GYTPTVFAQLPKLLERAGRNRHGTITGIYTVLVDGDDFNEPIADAVRSILDGHIVLTRDL  337
             Y P VF+ LP+LLER+G    G+IT++YTVLV+GDD NEP+AD VRS+LDGHIVL+R L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  338  ADMGHYPAIDVLRSISRLRTDICPQEVIAAGRTLTRHLATFRKVEDMINIGAYAQGSNPD  397
            A+ GHYPAIDVL ++SR+   + ++E    +  L R+LA ++ VE +I IG Y +G + D
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  398  IDQAIGMVPRINQFLQQQVQD  418
             D+AI+  P I  FL+Q  ++
Sbjct  396  TDKAIDTYPDICTFLRQSKDE  416

691) H650_14860 in NC_021500


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  279 bits (1043),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 188/420 (45%), Positives = 291/420 (70%), Gaps = 9/420 (2%)

Query  30   GSVTGISGIVLQCYLPGARLGDLCLLPRTSGAPIMAEVIGFDSQEVSLAALDTLEGIKPG  89
            G + ++S+ +L+  LPG  +G+LC       +  +AEV+G+++    L+++ +  G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELC---CIKPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  90   SEVHPLGLPHSIQVSPALKGCVFDGFGRALGGQGQAAFVDTLTARSVPVMHNATPATDRL  149
             +V +L   H + V+ AL G V+DGFGR+L+G+     +  +  +    M  + PA  R 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE----LPEVCWKDYDAM--PPPAMVRQ  133

Query  150  CIETPLYTGLSSIDGLLTLGAGQRAGIFAGAGCGKTTLLAELARNIPCDTIVFCLTGERG  209
             I  PL TG+ +ID++ T G GQR GIF+++G GK+TLLA L      D+ V+ L GERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  210  RELREFMDRELDEALRQRTVLVCATSDRSSMERVRAAFTATAIAEGFRQQGESTLLIVDS  269
            RE+REF+D  L E  R+R V+V ATSDR+++ERVRA F AT+IAE FR++G   +L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  270  LTRLARAQREIGLANGEPPGRNGFPPSVYNLLSRLVERSGRTRQGTITALYSVLVEQDSM  329
            LTR ARA REI+LA GE +    +PP+V++ L+RL+ER+G   +G+ITA+Y+VLVE D M
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  330  HDPIADEVRSLVDGHIILSRKLADQGHYPAIDVAASLSRVMNNITGTEQQTIATHIRQLM  389
            ++P+ADEVRSL+DGHI+LSR+LA++GHYPAIDV A+LSRV   +T+ E++ +A+ +R+ +
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  390  TAYADIEMLIRLGEYQTGSDPFTDYAVAVKPALDNVLKQSLRALRAPEITLNQLREIVAN  449
            + Y ++E+LIR+GEYQ G D  TD A+   P +   L+QS   + +PE+ +++L++I+++
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

692) fliI in NC_016944


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  278 bits (1042),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 177/398 (45%), Positives = 273/398 (69%), Gaps = 9/398 (2%)

Query  43   VGSLCKVETMNGEMEAEVVGFSGDNLFLMPSEQIIGVLPGAKVTPITTESGLPVGMELLG  102
            +G LC +    GE  AEVVG++G + +L P     G+  G +V ++     +PVG  LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTDQRASLNAIPINPLARKPINEPLDVGIKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +   +A+P  ++ R+PI +PL  GI+AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGVDGRQRSVVVA  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+ + R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  APADSSPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTDEHLLMSKAVRQILSVCRKNQDLVSIGAYKPGTDK  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDAAFTLKPKLDQYLQQAMKETVPYDMCVNMLRHVLS  438
              D A+   P +  +L+Q+  E    ++ ++ L+++L+
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

693) fliI in NC_012578


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  278 bits (1042),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 177/398 (45%), Positives = 273/398 (69%), Gaps = 9/398 (2%)

Query  43   VGSLCKVETMNGEMEAEVVGFSGDNLFLMPSEQIIGVLPGAKVTPITTESGLPVGMELLG  102
            +G LC +    GE  AEVVG++G + +L P     G+  G +V ++     +PVG  LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTDQRASLNAIPINPLARKPINEPLDVGIKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +   +A+P  ++ R+PI +PL  GI+AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGVDGRQRSVVVA  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+ + R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  APADSSPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTDEHLLMSKAVRQILSVCRKNQDLVSIGAYKPGTDK  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDAAFTLKPKLDQYLQQAMKETVPYDMCVNMLRHVLS  438
              D A+   P +  +L+Q+  E    ++ ++ L+++L+
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

694) fliI in NC_012668


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  278 bits (1042),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 177/398 (45%), Positives = 273/398 (69%), Gaps = 9/398 (2%)

Query  43   VGSLCKVETMNGEMEAEVVGFSGDNLFLMPSEQIIGVLPGAKVTPITTESGLPVGMELLG  102
            +G LC +    GE  AEVVG++G + +L P     G+  G +V ++     +PVG  LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTDQRASLNAIPINPLARKPINEPLDVGIKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +   +A+P  ++ R+PI +PL  GI+AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGVDGRQRSVVVA  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+ + R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  APADSSPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTDEHLLMSKAVRQILSVCRKNQDLVSIGAYKPGTDK  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDAAFTLKPKLDQYLQQAMKETVPYDMCVNMLRHVLS  438
              D A+   P +  +L+Q+  E    ++ ++ L+++L+
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

695) fliI in NC_016445


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  278 bits (1042),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 177/398 (45%), Positives = 273/398 (69%), Gaps = 9/398 (2%)

Query  43   VGSLCKVETMNGEMEAEVVGFSGDNLFLMPSEQIIGVLPGAKVTPITTESGLPVGMELLG  102
            +G LC +    GE  AEVVG++G + +L P     G+  G +V ++     +PVG  LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTDQRASLNAIPINPLARKPINEPLDVGIKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +   +A+P  ++ R+PI +PL  GI+AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGVDGRQRSVVVA  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+ + R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  APADSSPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTDEHLLMSKAVRQILSVCRKNQDLVSIGAYKPGTDK  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDAAFTLKPKLDQYLQQAMKETVPYDMCVNMLRHVLS  438
              D A+   P +  +L+Q+  E    ++ ++ L+++L+
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

696) fliI in NC_002505


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  278 bits (1042),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 177/398 (45%), Positives = 273/398 (69%), Gaps = 9/398 (2%)

Query  43   VGSLCKVETMNGEMEAEVVGFSGDNLFLMPSEQIIGVLPGAKVTPITTESGLPVGMELLG  102
            +G LC +    GE  AEVVG++G + +L P     G+  G +V ++     +PVG  LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTDQRASLNAIPINPLARKPINEPLDVGIKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +   +A+P  ++ R+PI +PL  GI+AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGVDGRQRSVVVA  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+ + R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  APADSSPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTDEHLLMSKAVRQILSVCRKNQDLVSIGAYKPGTDK  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDAAFTLKPKLDQYLQQAMKETVPYDMCVNMLRHVLS  438
              D A+   P +  +L+Q+  E    ++ ++ L+++L+
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

697) fliI in NC_021505


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  278 bits (1041),  Expect = 5e-76, Method: Compositional matrix adjust.
 Identities = 187/384 (49%), Positives = 267/384 (70%), Gaps = 9/384 (2%)

Query  67   AEVMGFAGPKVFLMPVGSIVGIAPGARVVPLDDGGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G+ G+K +L P  S  G+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPVINPLNRDPISKPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +A+  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATRGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGEAGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             GE   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVDADHLRQAQKFKQLWSRLSQSRD---LISVGAYVAGGDPETDLAIALQSKLVE  423
            RV P V   +H RQ   +  L+ RL+  ++   LI +G Y  G D +TD AI   + +  
Sbjct  352  RVFPVVTSHEH-RQLAAI--LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  424  FLRQGLQENVGMAQSREQLGAIFT  447
            FLRQ+ +E  G     E+L  I+T
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

698) fliI in NC_008702


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  278 bits (1041),  Expect = 5e-76, Method: Compositional matrix adjust.
 Identities = 190/402 (48%), Positives = 267/402 (67%), Gaps = 23/402 (5%)

Query  64   AEVVGFNGEKLYMMPTDDVFGLAPGAQVLPMENSVPRLVPGKRLGPRRRASDRAKHLPVG  123
            AEVVG+NG K  + P     GL  G QV+++               RRR      ++PVG
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMAL---------------RRR-----HQVPVG  94

Query  124  DAMLGRVVDGAGRPLDGLGPLNTVETRSLQGRPVNPLNRAPIAQPLDVGIRAINSLLTVG  183
            +A+LGRV+DG GRPLDG   L  V  +  ++ P  ++ R PI+QPL  GIRAI+S+ T G
Sbjct  95   EALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCG  153

Query  184  RGQRLGLFAGSGVGKSVLIGMMARFTSADIIVVGLIGERGREVKEFIEHNLGAEGRKRSV  243
             GQR+G+F+++GVGKS L++M+     AD  V+ LIGERGREV+EFI+  L+ E RKR V
Sbjct  154  EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCV  213

Query  244  VVAAPADNSPLMRLQGAAYATTIAEYFRDQGKQVLLIMDSLTRYAMAQREIALAIGEPPV  303
            +V A +D ++L R+++   ATTIAE+FRD+GK+V+L+ DSLTRYA A REIALA GE +V
Sbjct  214  IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAV  273

Query  304  TRGYPPSVFARLPALVERAGNGPDGGGSITAFYTVLAEGDDQQDPIADSARAILDGHFVL  363
            +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VL
Sbjct  274  SGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  364  SRNLADQGHYPAIDIEQSISRAMHTLVDNAHFDLVRRFKQLFSRYQRSRDLIAVGAYQPG  423
            SR LA++GHYPAID+  ++SR    +  + H +L   +++ ++ YQ    LI +G YQ G
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRG  391

Query  424  AEPLLDMAVALYPRLEAFLQQRVDEREPYDGAVMKLAQLFTG  465
             +   D A+  YP + +FL+Q  DE    +  + KL Q++T 
Sbjct  392  VDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

699) Mmwyl1_3445 in NC_009654


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  278 bits (1039),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 187/384 (49%), Positives = 272/384 (71%), Gaps = 14/384 (3%)

Query  42   VALGDRCSVQVRKDRWVESEVVGFTGDLTYLMPTEAIEGISPGARVRPLLGDSKMPVGDE  101
            V +G+ C ++   +    +EVVG+ G  + L P  +  G+  G +V +L    ++PVG+ 
Sbjct  40   VFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEA  96

Query  102  LLGRVVNGLGKPLDGKG--PIKTKDSVTLHGNVINPLQRKPISEPLDVGIKAINSLLTVG  159
            LLGRV++G+G+PLDG+    +  KD  ++      ++ R+PI++PL  GI+AI+S+ T G
Sbjct  97   LLGRVIDGFGRPLDGRELPEVCWKDYDAMPPP---AMVRQPITQPLMTGIRAIDSVATCG  153

Query  160  KGQRLGLFAGSGVGKSMLLGMMTKFTEADITVVGLIGERGREVKEFIDQILGEEGLSRSV  219
             GQR+G+F+++GVGKS LL+M+ +  +AD  V+ LIGERGREV+EFID  L+EE   R V
Sbjct  154  EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCV  213

Query  220  VVASPADDSalmrlraamlaTRIAEYYRDQGKNVLLLMDSLTRYAQAQREIALSVGEPPA  279
            +V + +D +AL R+RA  +AT IAE++RD+GK V+LL DSLTRYA+A REIAL+ GE + 
Sbjct  214  IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAV  273

Query  280  TKGYPPSVFSKLPQLVERAGNGCEGSGSVTAFYTVLTEGDDQQDPIADASRAILDGHIVL  339
            +  YPP+VFS LP+L+ER+G G    GS+TAFYTVL EGDD ++P+AD  R++LDGHIVL
Sbjct  274  SGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  340  SRRLAEEGHYPAIDIEASISRAMPHIVSEDH--LYGAMRVKQLYSKFQQNQDLISVGAYA  397
            SRRLAE GHYPAID+ A++SR  P + S++H  L + +R ++L + +Q+ + LI +G Y 
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILR-RRL-ALYQEVELLIRIGEYQ  389

Query  398  RGSDPDLDQAIIQMPEIRNFLQQS  421
            RG D D D+AI   P+I  FL+QS
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQS  413

700) fliI in NC_012108


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  278 bits (1039),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 191/420 (46%), Positives = 280/420 (67%), Gaps = 15/420 (3%)

Query  28   GRITKVVGLIAEGDGMGLGIGSLCAIRNDYNREIKAEVIGFRDDKVLLMPYGDLRGISPG  87
            GRI  V + + ++   G+ +G LC I+ +   E  AEV+G+ + K LL P+    G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPG---EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  88   SRIIPLEDTPAVAVGDAFLGRVIDGMGAPLDGKGKIPFTHK-YPLYGNPINPMERKTIKE  146
             ++++L     V+VG+A+LGRVIDG G PLDG+       K Y   + P  +M R+ I +
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPITQ  137

Query  147  PLDVGICAINTMIPLGRGQRVAIMAGSGVGKSVLMGMMTKHTTADVIILGLIGERGREVK  206
            PL  GI AI+++   G GQRV+I +++GVGKS L++M+ +   AD  +L LIGERGREV+
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  207  DFVSDTLGKEGMERSVVVAATSDSPPLVRMRGAYLATTLAEYFRDQGKNVLLIMDSITRY  266
            +F+  TL+ E   R V+V ATSD P+L R+R+ ++ATT+AE+FRD+GK V+L+ DS+TRY
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  267  AMSSRDVGLAAGEPPTSRGYTPSFFVQIPVLLERAGYIEGGGSITGIYTVLVEGDDMNDP  326
            A ++R+++LAAGE + S  Y P+ F  +P LLER+G +   GSIT++YTVLVEGDDMN+P
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMNEP  316

Query  327  VGDTVRSIVDGHIVLSRDLANKGHYPAIDVLASVSRVMRDVSQPEHME----LRKRAVDV  382
            ++D VRS++DGHIVLSR LA++GHYPAIDVLA++SRV   V+  EH +    LR+R    
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR----  372

Query  383  IAAHRGAEDMISIGAYVDGSDARIDEAKRLMPKIDGFLRQDMHRRVSIEMGLGELRRIFA  442
            +A  +  E +I IG Y  G D+  D A    P I  FLRQ  +   + E+ +  L++I++
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

701) Dester_1234 in NC_015185


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  278 bits (1039),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 174/393 (45%), Positives = 275/393 (70%), Gaps = 3/393 (0%)

Query  15   GKVSGVRGPIVEAKLPKVHIGDFCTIDNTIE-AEVVGFKEGKTLLMAYSDTTGISLGSII  73
            G++ +V + +++A LP V +G++C I    E AEVVG++ +K+LL +++ T+G+  G  +
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQV  82

Query  74   ESKISGLKIGVSDSLLGLVLDPFGNPMNAESFVPIDFVPLKAEPINPMKRKRIKEPLDLG  133
             +     ++ V+++LLG V+D FG P+++  +  +      A P  +M R+ I +PL  G
Sbjct  83   MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTG  142

Query  134  VRAINALLTVGKGQRIGIFAGAGVGKSTLMGMISRFTEADVNVVALIGERGREVREFIED  193
            +RAI+++ T G GQR+GIF+++GVGKSTL++M+    +AD NV+ LIGERGREVREFI+ 
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDF  202

Query  194  NLGEEGLKKSVIVVATSDHPPLAKIRAAFTACAIAEYFSYKGKNVLLFVDSLTRLAMAQR  253
             L+EE  K+ VIVVATSD+P+L ++RA F A +IAE+F  +GK V+L+ DSLTR A A R
Sbjct  203  TLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAR  262

Query  254  EIGLAVGEPPTSKGYTPSVFSTMAKLIERAGNFTDGGSITGIYTVLVEGDDISLDPVADA  313
            EI+LA GE + S  Y P+VFS++++L+ER+G   + GSIT++YTVLVEGDD++ +P+AD 
Sbjct  263  EIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN-EPLADE  320

Query  314  AVGFLDGHIILSRELANRRVFPSIDIIKSISRLTPQLVNEEVLKYQSIVLDVESTYQNNS  373
              ++LDGHI+LSR LA+R  +P+ID++ ++SR+ P + ++E  +  +I+    + YQ+  
Sbjct  321  VRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVE  380

Query  374  DVINLGLYKKGTSPKIDLAIKVYPAIENFIKQS  406
             +I +G Y++G     D AI  YP I  F++QS
Sbjct  381  LLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

702) YSA_08093 in NC_017986


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  278 bits (1039),  Expect = 7e-76, Method: Compositional matrix adjust.
 Identities = 187/384 (49%), Positives = 267/384 (70%), Gaps = 9/384 (2%)

Query  67   AEVMGFAGPKVFLMPVGSIVGIAPGARVVPLDDGGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G+ G+K +L P  S  G+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPVINPLNRDPISKPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +A+  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATRGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             GE   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVDADHLRQAQKFKQLWSRLSQSRD---LISVGAYVAGGDPETDLAIALQSKLVE  423
            RV P V   +H RQ   +  L+ RL+  ++   LI +G Y  G D +TD AI   + +  
Sbjct  352  RVFPVVTSHEH-RQLAAI--LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  424  FLRQGLGENVGMAQSREQLGAIFT  447
            FLRQ+ +E  G     E+L  I+T
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

703) D781_3942 in NC_020064


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1037),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 215/421 (52%), Positives = 300/421 (72%), Gaps = 16/421 (3%)

Query  29   GRVTGISGILLECSLPRARIGDLCRITRGEQESVLAEVVGFNPQHTLLSALGPLDGIARG  88
            GR+ ++S+ LL+  LP   +G+LC I  GE+   LAEVVG+N   +LLS++ +  G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  89   ARVTPLWLPHSISVSEALLGSVLDGFGRPLDEQSVGAFALPG---SGVDTVPVVSDAPPP  145
             +V +L+  H ++V+EALLG V+DGFGRPLD +      LP     + D++P     PP+
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-----ELPEVCWKDYDAMP-----PPA  129

Query  146  TARPRIAQALPTGVRAIDGLLTLGVGQRVGVFAGAGCGKTTLLAELARNTPCDAIVFGLI  205
              R  I+Q+L TG+RAID++ T G GQRVG+F+++G GK+TLLA L      D+ V+ LI
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  206  GERGRELREFLDHELDEALRSRTVLVCATSDRSSMeraraaftataiaeafraQGKSVLL  265
            GERGRE+REF+D  L E  R R V+V ATSDR+++ER RA F AT+IAE FR +GK V+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  266  ILDSLTRFARAQREIglalgeppgrgglppSVYTLLPGLLERAGQTMTGSITALYSVLIE  325
            + DSLTR+ARA REI+LA GE +  G  PP+V++ LP LLER+G    GSITA+Y+VL+E
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  326  ADSMNDPVADEVRSLIDGHIVLTRRLAERGHYPAIDVLASLSRTMSNVAEREQLTDATRL  385
            +D MN+P+ADEVRSL+DGHIVL+RRLAERGHYPAIDVLA+LSR  + V+ +E+   A+ L
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  386  RRLMSAWQQVEMLIRLGEYEPGHDAMTDAAVEAQGAINGFLRQETRAPCAWEETLQQLTE  445
            RR ++  Q+VE+LIR+GEY+ G D+ TD A+++   I  FLRQ     C+ E  +++L +
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

Query  446  V  446
            +
Sbjct  430  I  430

704) fliI in NC_017530


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1035),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 187/384 (49%), Positives = 267/384 (70%), Gaps = 9/384 (2%)

Query  67   AEVMGFSGPKVFLMPVGSIVGIAPGARVVPLDDGGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++G+K +L P  S  G+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPVINPLNRDPISKPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +A+  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATRGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             GE   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVDADHLRQAQKFKQLWSRLSQSRD---LISVGAYVAGGDPETDLAIALQSKLVE  423
            RV P V   +H RQ   +  L+ RL+  ++   LI +G Y  G D +TD AI   + +  
Sbjct  352  RVFPVVTSHEH-RQLAAI--LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  424  FLRQGLRENVGMAQSREQLGAIFT  447
            FLRQ+  E  G     E+L  I+T
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

705) fliI in NC_010322


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1035),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 187/384 (49%), Positives = 267/384 (70%), Gaps = 9/384 (2%)

Query  67   AEVMGFSGPKVFLMPVGSIVGIAPGARVVPLDDGGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G++G+K +L P  S  G+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPVINPLNRDPISKPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +A+  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATRGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             GE   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVDADHLRQAQKFKQLWSRLSQSRD---LISVGAYVAGGDPETDLAIALQSKLVE  423
            RV P V   +H RQ   +  L+ RL+  ++   LI +G Y  G D +TD AI   + +  
Sbjct  352  RVFPVVTSHEH-RQLAAI--LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  424  FLRQGLRENVGMAQSREQLGAIFT  447
            FLRQ+  E  G     E+L  I+T
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

706) fliI in NC_021491


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1036),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 187/384 (49%), Positives = 267/384 (70%), Gaps = 9/384 (2%)

Query  67   AEVMGFAGPKVFLMPVGSIVGIAPGARVVPLDDGGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G+ G+K +L P  S  G+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPVINPLNRDPISKPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +A+  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATRGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             GE   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVDADHLRQAQKFKQLWSRLSQSRD---LISVGAYVAGGDPETDLAIALQSRLVD  423
            RV P V   +H RQ   +  L+ RL+  ++   LI +G Y  G D +TD AI   + +  
Sbjct  352  RVFPVVTSHEH-RQLAAI--LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  424  FLRQGLQENVGMAQSREQLGAIFT  447
            FLRQ+ +E  G     E+L  I+T
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

707) fliI in NC_012997


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1037),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 178/366 (49%), Positives = 261/366 (72%), Gaps = 5/366 (1%)

Query  64   AEVVGFDEDKTFLMPVQKVDGLQPGARVVPVDAHKNLSMGEHLRGRILNGVGQPLDGLG-  122
            AEVVG++  K++L P     GL+ G +V+++  + ++++GE L GR+++G G+PLDG   
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  123  PVSCRAKVDLEPSTINPLHRHPIDETLDVGIRAINSLLTVGKGQRIGLFAGSGVGKSVLL  182
            P  C+   D  P+   ++ R+PI + L  GIRAI+S+ T G GQR+G+F+++GVGKS LL
Sbjct  115  PEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  183  GMMTRFTTADVVVVGLIGERGREVKEFVDHILGPQGLKKSvvvaapaddapLMRLRASQL  242
            +M+     AD  V+ LIGERGREV+EF+D  L+ +  K+ V+V A +D ++L R+RA  +
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  243  ATRIAEYFRDQGKNVLLLMDSLTRFAQAQREISLAIGEPPATKGYPPSVFAKIPDLVERA  302
            AT IAE+FRD+GK V+LL DSLTR+A+A REI+LA GE + +  YPP+VF+ +P L+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  303  GNGDKGGGSITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRQLAEQGIYPAIDIEASI  362
            G G+K  GSITAFYTVL EGDD+++P+AD  R++LDGHIVLSR+LAE+G YPAID+ A++
Sbjct  293  GMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  363  SRVMPNIVDANHLAAAQRFKQLLARYRENKDLIAIGAYARGSDPQIDAAIERFPHLQQFI  422
            SRV P +   +H   A  +++ LA Y+E   LI IG Y RG D + D AI+ +P++  F+
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  423  GQKIGE  428
             Q  +E
Sbjct  411  RQSKDE  416

708) fliI in NC_020409


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1035),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 178/398 (45%), Positives = 272/398 (69%), Gaps = 5/398 (1%)

Query  16   CQTFGKVTKVVGLIAEGHGIKAPLGSVCYLLPDHGPSIPAEVVGFRDGACLFMPYSDMRG  75
            C+  G++  V + + ++      +G +C + P++     AEVVG+ ++  L+ P++   G
Sbjct  20   CR-WGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAG  75

Query  76   ISPGSLIQNAATPPHMPVGYSMLGRALDAFGAPLDGKQTLTPERFVPLHREPPNPLERPR  135
            +  G  +       ++PVG ++LGR +D+FG PLDG++ L        +  PP ++ R  
Sbjct  76   LHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQP  134

Query  136  IDEPLDVGIRSVNSLLTLGKGQRVGIMAGSGVGKSTTLGMMARYTKADINVIALVGERGR  195
            I +PL  GIR+++S+ T G GQRVGI +++GVGKST L+M+     AD NV+ L+GERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  196  EVVEFMERDLGPEGMARSVLIVATSDKSPLIRMRaayaatavaEFFRDEGKDVLLMMDSV  255
            EV EF++  L+ E   R V++VATSD+++L R+RA + AT++AEFFRD+GK V+L+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  256  TRFAMAGREVGLAAGEPPTRGGYTPSVFAHLPQLLERAGKNRLGSITGIYTVLVDGDDFT  315
            TR+A A+RE++LAAGE +  G Y P+VF+ LP+LLER+G    GSIT++YTVLV+GDD  
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  316  EPIADSTRSILDGHIVLTRDLADLGHYPAIDVLRSVSRIRSDITTSQAQADGRALLRHMA  375
            EP+AD  RS+LDGHIVL+R LA+ GHYPAIDVL ++SR+ + +T+ + +  +  L R++A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  376  TFKKVEDMVNIGAYQKGANSEVDKAISMVGPINQFLRQ  413
             ++ VE ++ IG YQ+G +++ DKAI     I  FLRQ
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

709) spa47 in NC_007607


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1036),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 176/398 (45%), Positives = 276/398 (70%), Gaps = 10/398 (2%)

Query  14   NKISGPILETSLSDVSIGEICNIQAGIESNEIVARAQVVGFHDEKTILSLIGNSRGLSRQ  73
            + +S+ +L++ L++V +GE+C I++G E       A+VVG+++ K++LS + ++ GL   
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   TLIKPTAQFLHTQVGRGLLGAVVNPLGEVTDKFAVTDNSEILYRPVDNAPPLYSERAAIE  133
              + +  +  +  VG +LLG V++ +G     +   + +E+  +  D  PP    R +I 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGR---PLDGRELPEVCWKDYDAMPPPAMVRQPIT  136

Query  134  KPFLTGVKVIDSLLTCGEGQRMGIFASAGCGKTFLMNMLIEHSGADIYVIGLIGERGREV  193
            +P++TG++ IDS+ TCGEGQR+GIF+++G GK+ L+ ML + ++AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TETVDYLKNSEKKSRCVLVYATSDYSSVDRCNAAYIATAIAEFFRTEGHKVALFIDSLTR  253
             E +D+  + E + RCV+V ATSD ++++R  A ++AT+IAEFFR +G +V L+ DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALAAGESPARRGYPVSVFDSLPRLLERPGKLKAGGSITAFYTVLLEDDDFAD  313
            YARA R++ALAAGE++    YP +VF +LPRLLER G +   GSITAFYTVL+E+DD  +
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMNE  315

Query  314  PLAEEVRSILDGHIYLSRNLAQKGQFPAIDSLKSISRVFTQVVDEKHRIMAAAFRELLSE  373
            PLA+EVRS+LDGHI LSR LA++G++PAID L ++SRVF  V  + HR +AA +R  L+ 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  374  IEELRTIIDFGEYKPGENASQDKIYNKISVVESFLKQD  411
             +E+  +I +GEY+ G ++  DK  +  + + +FL+Q 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

710) spa47 in NC_017319


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1036),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 177/396 (45%), Positives = 275/396 (70%), Gaps = 10/396 (2%)

Query  16   ISGPILETSLSDVSIGEICNIQAGIESNEIVARAQVVGFHDEKTILSLIGNSRGLSRQTL  75
            +S+ +L++ L++V +GE+C I++G E       A+VVG+++ K++LS + ++ GL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  76   IKPTAQFLHTQVGRGLLGAVVNPLGEVTDKFAVTDNSEILYRPVDNAPPLYSERAAIEKP  135
            + +  +  +  VG +LLG V++ +G     +   + +E+  +  D  PP    R +I +P
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGR---PLDGRELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  136  FLTGIKVIDSLLTCGEGQRMGIFASAGCGKTFLMNMLIEHSGADIYVIGLIGERGREVTE  195
            ++TGI+ IDS+ TCGEGQR+GIF+++G GK+ L+ ML + ++AD  V+ LIGERGREV E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  196  TVDYLKNSEKKSRCVLVYATSDYSSVDRCNAAYIATAIAEFFRTEGHKVALFIDSLTRYA  255
             +D+  + E + RCV+V ATSD ++++R  A ++AT+IAEFFR +G +V L+ DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  256  RALRDVALAAGESPARRGYPVSVFDSLPRLLERPGKLKAGGSITAFYTVLLEDDDFADPL  315
            RA R++ALAAGE++    YP +VF +LPRLLER G +   GSITAFYTVL+E+DD  +PL
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMNEPL  317

Query  316  AEEVRSILDGHIYLSRNLAQKGQFPAIDSLKSISRVFTQVVDEKHRIMAAAFRELLSEIE  375
            A+EVRS+LDGHI LSR LA++G++PAID L ++SRVF  V  + HR +AA +R  L+  +
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  376  ELRTIIDFGEYKPGENASQDKIYNKISVVESFLKQD  411
            E+  +I +GEY+ G ++  DK  +  + + +FL+Q 
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

711) spa47 in NC_004851


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1036),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 177/396 (45%), Positives = 275/396 (70%), Gaps = 10/396 (2%)

Query  16   ISGPILETSLSDVSIGEICNIQAGIESNEIVARAQVVGFHDEKTILSLIGNSRGLSRQTL  75
            +S+ +L++ L++V +GE+C I++G E       A+VVG+++ K++LS + ++ GL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  76   IKPTAQFLHTQVGRGLLGAVVNPLGEVTDKFAVTDNSEILYRPVDNAPPLYSERAAIEKP  135
            + +  +  +  VG +LLG V++ +G     +   + +E+  +  D  PP    R +I +P
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGR---PLDGRELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  136  FLTGIKVIDSLLTCGEGQRMGIFASAGCGKTFLMNMLIEHSGADIYVIGLIGERGREVTE  195
            ++TGI+ IDS+ TCGEGQR+GIF+++G GK+ L+ ML + ++AD  V+ LIGERGREV E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  196  TVDYLKNSEKKSRCVLVYATSDYSSVDRCNAAYIATAIAEFFRTEGHKVALFIDSLTRYA  255
             +D+  + E + RCV+V ATSD ++++R  A ++AT+IAEFFR +G +V L+ DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  256  RALRDVALAAGESPARRGYPVSVFDSLPRLLERPGKLKAGGSITAFYTVLLEDDDFADPL  315
            RA R++ALAAGE++    YP +VF +LPRLLER G +   GSITAFYTVL+E+DD  +PL
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMNEPL  317

Query  316  AEEVRSILDGHIYLSRNLAQKGQFPAIDSLKSISRVFTQVVDEKHRIMAAAFRELLSEIE  375
            A+EVRS+LDGHI LSR LA++G++PAID L ++SRVF  V  + HR +AA +R  L+  +
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  376  ELRTIIDFGEYKPGENASQDKIYNKISVVESFLKQD  411
            E+  +I +GEY+ G ++  DK  +  + + +FL+Q 
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

712) fliI in NC_012582


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1035),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 177/398 (45%), Positives = 273/398 (69%), Gaps = 9/398 (2%)

Query  43   VGSLCKVETMNGEMEAEVVGFSGDNLFLMPSEQIIGVLPGAKVTPITTESGLPVGMELLG  102
            +G LC +    GE  AEVVG++G + +L P     G+  G +V ++     +PVG  LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTDQRASLNAIPINPLARKPINEPLDVGIKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +   +A+P  ++ R+PI +PL  GI+AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGVDGRQRSVVVA  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+ + R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  APADSSPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTDEHLLMSKAVRQILSVCRKNQDLVSIGAYKLGTDK  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDAAFTLKPKLDQYLQQAMKETVPYDMCVNMLRHVLS  438
              D A+   P +  +L+Q+  E    ++ ++ L+++L+
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

713) fliI in NC_009457


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1035),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 177/398 (45%), Positives = 273/398 (69%), Gaps = 9/398 (2%)

Query  43   VGSLCKVETMNGEMEAEVVGFSGDNLFLMPSEQIIGVLPGAKVTPITTESGLPVGMELLG  102
            +G LC +    GE  AEVVG++G + +L P     G+  G +V ++     +PVG  LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTDQRASLNAIPINPLARKPINEPLDVGIKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +   +A+P  ++ R+PI +PL  GI+AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGVDGRQRSVVVA  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+ + R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  APADSSPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTDEHLLMSKAVRQILSVCRKNQDLVSIGAYKLGTDK  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDAAFTLKPKLDQYLQQAMKETVPYDMCVNMLRHVLS  438
              D A+   P +  +L+Q+  E    ++ ++ L+++L+
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

714) fliI in NC_006370


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1035),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 186/429 (44%), Positives = 286/429 (67%), Gaps = 19/429 (4%)

Query  1    MSSPLANRLS-QYQTKGIACRPIASGRLVRVVGLTLEAIGCRAP---VGSLCIVETLNGD  56
            M + L +RL  +Y   +  CR    GR+  V +  L+A   + P   +G LC +    G+
Sbjct  1    MKNELMQRLRLKYPPPDGYCR---WGRIQDVSATLLNA---WLPGVFMGELCCIKP--GE  52

Query  57   LEAEVVGFSGEILFLMPSEQLLGVMPGAKVTPVLHDNGLPVGPELLGRVIDGVGNPLDG-  115
              AEVVG++G   +L P     G+  G +V ++ + + +PVG  LLGRVIDG G PLDG 
Sbjct  53   ELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR  112

Query  116  -LGDIFTEKRASFTSPAINPLLRKPIKEPLDVGIKAINGLLSVGKGQRIGLFAGSGVGKS  174
             L ++    +  + + +  +++R+PI +PL  GI+AI+++ + G GQR+G+F+++GVGKS
Sbjct  113  ELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  175  VTLGMMTRGTTAQVVVVGLIGERGREVKEFIDEILGEEGRKRAVVIAAPADTSPLMRLKG  234
              L+M+  +  A+  V+ LIGERGREV+EFID  L+EE RKR V++ A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  235  CQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPALV  294
               A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  295  ERAGNGSGDQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAIDVE  354
            ER+  G G++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR +A+ GHYPAIDV 
Sbjct  290  ERT--GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  RSVSRVMPAIVDDEHMLMSKAVRQILSICRKNQDLVSIGAYKPGTDPTIDQAFSFKPKLD  414
             ++SRV P +  +EH  ++  +R+ L++ +  + L+ IG Y+ G D   D+A+   P + 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  AYLQQEMKE  423
            ++L+Q   E
Sbjct  408  TFLRQSKDE  416

715) fliI in NC_018220


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1038),  Expect = 7e-76, Method: Compositional matrix adjust.
 Identities = 187/384 (49%), Positives = 267/384 (70%), Gaps = 9/384 (2%)

Query  67   AEVMGFAGPKVFLMPVGSIVGIAPGARVVPLDDGGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G+ G+K +L P  S  G+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPVINPLNRDPISKPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +A+  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATRGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             GE   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVDADHLRQAQKFKQLWSRLSQSRD---LISVGAYVAGGDPETDLAIALQSKLVE  423
            RV P V   +H RQ   +  L+ RL+  ++   LI +G Y  G D +TD AI   + +  
Sbjct  352  RVFPVVTSHEH-RQLAAI--LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  424  FLRQGLGENVGMAQSREQLGAIFT  447
            FLRQ+ +E  G     E+L  I+T
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

716) fliI in NC_009512


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1038),  Expect = 7e-76, Method: Compositional matrix adjust.
 Identities = 187/384 (49%), Positives = 267/384 (70%), Gaps = 9/384 (2%)

Query  67   AEVMGFAGPKVFLMPVGSIVGIAPGARVVPLDDGGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G+ G+K +L P  S  G+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPVINPLNRDPISKPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +A+  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATRGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             GE   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVDADHLRQAQKFKQLWSRLSQSRD---LISVGAYVAGGDPETDLAIALQSKLVE  423
            RV P V   +H RQ   +  L+ RL+  ++   LI +G Y  G D +TD AI   + +  
Sbjct  352  RVFPVVTSHEH-RQLAAI--LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  424  FLRQGLGENVGMAQSREQLGAIFT  447
            FLRQ+ +E  G     E+L  I+T
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

717) TOL_2514 in NC_020888


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1038),  Expect = 7e-76, Method: Compositional matrix adjust.
 Identities = 191/397 (49%), Positives = 274/397 (70%), Gaps = 6/397 (1%)

Query  41   VGDRCRVERQQGGDIEAEVVGFDDQRVFLMPIEQVDGLRPGSKVWPLNGAADVPVGFSLL  100
            +G+ C +   + G+  AEVVG+++ + +L P+    GL+ G +V +L    +VPVG +LL
Sbjct  42   MGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  101  GRVLDGAGRPLDSKGPLVDIEHGHLQGRPINPLHRAPIREPLDVGIRAINSLLTVGRGQR  160
            GRV+DG GRPLD++  L ++   + ++ P  ++ R PI +PL  GIRAI+S+ T G GQR
Sbjct  99   GRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  161  IGLFAGSGVGKSVLLGMMTRFTTADVIVVGLIGERGREVKEFIDEILGPEGLTRAVVVAS  220
            +G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFID  L+ E   R V+V +
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  221  PADDSPLMRLRAAAYCTSIAEFFRDQGQNVLLLMDSLTRYAQAQREIALAVGEPPATKGY  280
             +D ++L R+RA    T+IAEFFRD+G+ V+LL DSLTRYA+A REIALA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  281  PPSVFNKLPKLVERTGNGQEGGGSITAFYTVLSEGDDMQDPIADASRAILDGHIVLSRRL  340
            PP+VF+ LP+L+ERTG G+   GSITAFYTVL EGDDM++P+AD  R++LDGHIVLSRRL
Sbjct  278  PPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  341  AEEGHYPAIDVEASVSRVMPQIVDDSWLQKAQLCKRLMSHHRQNQDLISVGAYQPGSDQV  400
            AE GHYPAIDV A++SRV P +  +   Q A + +R ++  ++ + LI +G YQ G D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  401  LDVAIERLPRIKAMLRQGLKEGSSIKESMAALNELFP  437
             D AI+  P I + LRQ+  E  +    +  L++++ 
Sbjct  396  TDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

718) fliI in NC_019905


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1038),  Expect = 8e-76, Method: Compositional matrix adjust.
 Identities = 186/384 (49%), Positives = 266/384 (70%), Gaps = 9/384 (2%)

Query  67   AEVMGFAGPKVFLMPVGSIVGIAPGARVVPLDDSGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G+ G+K +L P  S  G+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPVINPLNRDPISKPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +A+  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATRGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGEPGGGSITAFYTVLSEGDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             GE   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVDADHLRQAQKFKQLWSRLSQSRD---LISVGAYVAGGDPETDLAIALQSKLVE  423
            RV P V   +H RQ   +  L+ RL+  ++   LI +G Y  G D +TD AI   + +  
Sbjct  352  RVFPVVTSHEH-RQLAAI--LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  424  FLRQGLRESVGMAQSREQLGAIFA  447
            FLRQ+  E  G     E+L  I++
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

719) Daes_2015 in NC_014844


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1038),  Expect = 8e-76, Method: Compositional matrix adjust.
 Identities = 178/398 (45%), Positives = 273/398 (69%), Gaps = 8/398 (2%)

Query  39   LGSVCYLIPEESPPIAAEVVGFRDGACLFMPYSDMRGIGPGNLIQNAATPPHMPVAKAML  98
            +G +C + P E     AEVVG+ ++  L+ P++   G+  G+ +       ++PV+ A+L
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  99   GRALDCFGTPMDGKG--PITPDAFVPLHREPPNPLERPRINEPLDVGIRSVNALLTLGKG  156
            GR +D FG P+DG+    +    + ++   PP ++ R  I +PL  GIR+++++ T G G
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  157  QRVGIMAGSGVGKSTTLGMMARYTKADINVIALVGERGREVVEFMERDLGPEGMARSVLV  216
            QRVGI +++GVGKST L+M+     AD NV+ L+GERGREV EF++  L+ E   R V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  217  VATSDKSPLIRMRaayaatavaEYFRDQGKDVLLMMDSVTRFAMAGREVGLAAGEPPTRG  276
            VATSD+++L R+RA + AT++AE+FRD+GK V+L+ DS+TR+A A+RE++LAAGE +  G
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  277  GYTPSVFAHLPQLLERAGKSAKGSITGIYTVLVDGDDFTEPIADSTRSILDGHIVLTREL  336
             Y P+VF+ LP+LLER+G + KGSIT++YTVLV+GDD  EP+AD  RS+LDGHIVL+R L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  337  ADLGHYPAIDVLRSVSRLRGDITTNQAQADGQALLRHMATFKRVEDMVNIGAYQKGANVE  396
            A+ GHYPAIDVL ++SR+   +T+++ +  +  L R++A ++ VE ++ IG YQ+G + +
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  397  VDKAIAMVAPINGFLRQLVTEREPLDSAFAKLHGLVAG  434
             DKAI   + I  FLRQ   E    +  + KLH +++ 
Sbjct  396  TDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

720) spa47 in NC_007385


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  277 bits (1038),  Expect = 8e-76, Method: Compositional matrix adjust.
 Identities = 177/396 (45%), Positives = 276/396 (70%), Gaps = 10/396 (2%)

Query  16   ISGPILETSLSDVSIGEICNIQAGIESNEIVARAQVVGFHDEKTILSLIGNSRGLSRQTL  75
            +S+ +L++ L++V +GE+C I++G E       A+VVG+++ K++LS + ++ GL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  76   IKPTAQFLHTQVGRGLLGAVVNPLGEVTDKFAVTDNSEILYRPVDNAPPLYSERAAIEKP  135
            + +  +  +  VG +LLG V++ +G     +   + +E+  +  D  PP    R +I +P
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGR---PLDGRELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  136  FLTGIKVIDSLLTCGEGQRMGIFASAGCGKTFLMNMLIEHSGADIYVIGLIGERGREVTE  195
            ++TGI+ IDS+ TCGEGQR+GIF+++G GK+ L+ ML + ++AD  V+ LIGERGREV E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  196  TVDYLKNSEKKNRCVLVYATSDYSSVDRCNAAYIATAIAEFFRTEGHKVALFIDSLTRYA  255
             +D+  + E ++RCV+V ATSD ++++R  A ++AT+IAEFFR +G +V L+ DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  256  RALRDVALAAGESPARRGYPVSVFDSLPRLLERPGKLKAGGSITAFYTVLLEDDDFADPL  315
            RA R++ALAAGE++    YP +VF +LPRLLER G +   GSITAFYTVL+E+DD  +PL
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMNEPL  317

Query  316  AEEVRSILDGHIYLSRNLAQKGQFPAIDSLKSISRVFTQVVDEKHRIMAAAFRELLSEIE  375
            A+EVRS+LDGHI LSR LA++G++PAID L ++SRVF  V  + HR +AA +R  L+  +
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  376  ELRTIIDFGEYKPGENASQDKIYNKISVVESFLKQD  411
            E+  +I +GEY+ G ++  DK  +  + + +FL+Q 
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

721) Desgi_2227 in NC_021184


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1032),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 198/397 (50%), Positives = 286/397 (73%), Gaps = 11/397 (2%)

Query  44   IGQVCDIYIPGERNPVMAEVVGFQEDSSILMPLGELRGIYPGCTVVPRSEAliigvgegl  103
            +G++C I  PGE    +AEVVG++   ++L P+    G+  G  V++      + VGE+L
Sbjct  42   MGELCCI-KPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  104  lgrvldglgrPIDGKDLTL--RGTYSVNNPPPDPLQRKRINKIFTTGVRAIDALMTCGQG  161
            LGRV+DG+GRP+DG++L    +  Y  +  PP ++ R+ I + + TG+RAID++ TCG+G
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  162  QRIGIFAGSGVGKSTILGMMARFCNADLNVIALIGERGREVREFIENDLGPDGMKRSIVV  221
            QR+GIF+++GVGKST+L+M+    +AD NV+ LIGERGREVREFI+  L+ +  KR ++V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  222  TATSDQPALVRLKGAFVASAIAEYFRDQGKNVLLFMDSITRFAMAQREVGLAVGEPPATK  281
             ATSD+PAL R+++ FVA++IAE+FRD+GK V+L+ DS+TR+A A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  282  GYTPSVFSLLPKLLERSGSSKNGTITAFYTVLVEADDMNEPIADAVRGILDGHIVLSREL  341
             Y P+VFS LP+LLER+G + +G+ITAFYTVLVE+DDMNEP+AD VR++LDGHIVLSR L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  342  AARGHYPAIDVLNSVSRLATNLVDKNhalaaarlrhllaTYTQSEDLINIGAYVKGTSPE  401
            A RGHYPAIDVL ++SR+   +   +H   AA LR+ LA Y + E LI IG Y +G   +
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  402  IDNAINKYDKILKFLLQNKDEESSFD---QTLQELLK  435
             D+AI+ Y  I  FL Q+KDE  + +   + L+++L 
Sbjct  396  TDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

722) Achl_2988 in NC_011886


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1034),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 169/349 (49%), Positives = 248/349 (72%), Gaps = 1/349 (0%)

Query  72   PLGRLTGVAAGDPARSKGKPLMVPTGTGLFGRVLDGLGRPIDGKGPLVTGRHVPADNESP  131
            P+   +G+  G+   +  +   VP G +L+GRV+DG+GRP+DG+  L        D  +P
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPP  127

Query  132  SAMHRARVEAPLHTGVRVLDTMATLGRGQRMGLFAGSGVGKSSLLSMVARGTDAEVSVIA  191
            +AM R  +  PL TG+R +D++AT G GQR+G+F+++GVGKS+LL+M+  + DA+ +V+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  192  LVGERGREVREFLEDDLGAEGLARSVVVVATSDEPALMRLRCAVTATRIAESFREAGRDV  251
            L+GERGREVREF++  L+ E   R V+VVATSD PAL R+R    AT IAE FR+ G+ V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  252  VLMMDSLTRVAMAQREIGLSAGEPPATRGYPPSTFSLLARLLERAGTAETGSVTGIYTVL  311
            VL+ DSLTR A A REI+L+AGE + +  YPP+ FS L+RLLER+G +E GS+T++YTVL
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVL  307

Query  312  VDGDDHNEPIADAARSILDGHVVLDRKLAVAGHFPSVDVLGSVSRVASKVNAPGNTAVAA  371
            V+GDD NEP+AD  RS+LDGH+VL R+LA  GH+P++DVL+++SRV + V +  +  +AA
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  372  VLRKTLAARRNAQDLIDVGAYHRGTNPLVDAALDNEAAINSFLQQRMDD  420
            +LR+ LA  ++ + LI +G Y+RG +   D A+D  + I +FL+Q  D+
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

723) Fraau_2081 in NC_017033


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1034),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 191/397 (49%), Positives = 269/397 (68%), Gaps = 6/397 (1%)

Query  57   IGARCMVDGSEGSVETEVVGFNNGRLFLMPTDTMHGVLPNARVRPFTTRAGSPVGDRLIG  116
            +G  C +  +E    +EVVG+N ++ +L P  +  G+    +V ++  R   PVG+ L+G
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  117  RVIDANGDPLDDQGPLLTTERASSRRAPINPMQRQPITAPLDVGVRSINALLSVGRGQRM  176
            RVID+ G PLD++  L    +      P  +M RQPIT PL  G+R+I+++ + G GQR+
Sbjct  100  RVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  177  GLFAGSGVGKSTLLGMMTRYTSADIVVVGLIGERGREVKEFVDYTLGTEGRERAVIVaap  236
            G+F+++GVGKSTLL+M+     AD  V+ LIGERGREV+EF+D+TL+ E R R VIV A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  237  adappLNRLRGARLATTIAEHFRDKGKHVLLLMDSLTRYAQAQREIALAIGEPPATRGYP  296
            +D P+L+R+R+  +ATTIAE FRD+GK+V+LL DSLTRYA+A REIALA GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  297  PSVFAMLPALVERAGNGLEGQGSITAFYTVLTEGDDYRGDPVADAARAILDGHIVLSRDL  356
            P+VF+ LP L+ER+G G   +GSITAFYTVL EGDD   +P+AD  R++LDGHIVLSR L
Sbjct  279  PGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDD-MNEPLADEVRSLLDGHIVLSRRL  335

Query  357  AEAGHYPAIDIEASISRVMPQIVDAGQMALARRFRQIYASYQQQRDLIAVGAYQKGSDPR  416
            AE GHYPAID+ A++SRV P +    +  LA  +R+  A YQ+   LI +G YQ+G D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  417  TDEAIALWPRLVTFLQQDTEQPVHLDEARNSLQTLLA  453
            TD AI   P + TFL+Q  ++    +   + L+ +L+
Sbjct  396  TDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

724) fliI in NC_002947


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1034),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 187/384 (49%), Positives = 266/384 (70%), Gaps = 9/384 (2%)

Query  67   AEVMGFAGPKVFLMPVGSIVGIAPGARVVPLDDGGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G+ G+K +L P  S  G+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPVINPLNRDPISKPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +A+  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATRGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             GE   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVDADHLRQAQKFKQLWSRLSQSRD---LISVGAYVAGGDPETDLAIALQSKLVE  423
            RV P V   +H RQ   +  L+ RL+  ++   LI +G Y  G D +TD AI   + +  
Sbjct  352  RVFPVVTSHEH-RQLAAI--LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  424  FLRQGLRENVGMAQSREQLGAIFT  447
            FLRQ+  E  G     E+L  I+T
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

725) PPS_3768 in NC_015733


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1034),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 186/384 (49%), Positives = 266/384 (70%), Gaps = 9/384 (2%)

Query  67   AEVMGFAGPKVFLMPVGSIVGIAPGARVVPLDDGGRLPMGMSMLGRVLDGAGRALDGKGG  126
            AEV+G+ G+K +L P  S  G+  G +V++L    ++P+G ++LGRV+DG GR+LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  MKAEDWVPMDGPVINPLNRDPISKPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLG  186
            +    W   D+    ++ R+PI++PL  GIR+I+++ T G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTRFTEAEIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC  246
            M+    +A+  V+ LIGERGREV+EFI+  L+EE  KR V+V + +D ++L R+RA    
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATRGYPPSVFAKLPKLVERAG  306
            T IAE+FRD+GK V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHFVLSRRLAEEGHYPAIDIEASIS  366
             GE   GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVMPQVVDADHLRQAQKFKQLWSRLSQSRD---LISVGAYVAGGDPETDLAIALQSKLVE  423
            RV P V   +H RQ   +  L+ RL+  ++   LI +G Y  G D +TD AI   + +  
Sbjct  352  RVFPVVTSHEH-RQLAAI--LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  424  FLRQGLRENVGMAQSRDQLGAIFT  447
            FLRQ+  E  G     ++L  I+T
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

726) Desal_1150 in NC_012881


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1033),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 169/359 (48%), Positives = 248/359 (70%), Gaps = 5/359 (1%)

Query  59   VVGFRDGACLFMPYGEMHGISPGSLIENSKTPPKVPVGMNLLGRAVDAFGEPIDGKG--P  116
            VVG+ ++  L+ P+    G+  G  +   +   +VPVG  LLGR +D+FG P+DG+    
Sbjct  57   VVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE  116

Query  117  IIPDAYNPLHRDPPNPLERPRINEPLDVGVKAINGLLTLGKGQRMGIMAGSGVGKSTLLS  176
            +    Y+++   PP ++ R  I +PL  G++AI+++ T G GQR+GI +++GVGKSTLL+
Sbjct  117  VCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  177  MMARYTVADINVIALIGERGREVVEFIERDLGPEGLARSVLVIATSDKSPLIRLRAAYTA  236
            M+     AD NV+ LIGERGREV EFI+  L+ E   R V+V+ATSD+++L R+RA + A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  237  TAIAEYFRDLNKDVLLMMDSVTRFAMAGREVGLAAGEPPTRGGYTPSVFAQLPKLLERAG  296
            T+IAE+FRD  K V+L+ DS+TR+A A+RE++LAAGE +  G Y P+VF+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  297  KNPNGSITGVYTVLVDGDDFTEPIADAVRSILDGHIVLTRDLADQGHYPCIDVLKSVSRV  356
               +GSIT+ YTVLV+GDD  EP+AD VRS+LDGHIVL+R LA++GHYP IDVL ++SRV
Sbjct  294  MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRV  353

Query  357  RGDIVQNDIVAAGRKVLGQLATFRKVEDMVNIGAYQKGANPEIDTAIKMVPAINGFLQQ  415
               +  ++    +  +  +LA ++ VE ++ IG YQ+G + + D AI   P I  FL+Q
Sbjct  354  FPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

727) Btus_1497 in NC_014098


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1032),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 200/434 (47%), Positives = 294/434 (68%), Gaps = 19/434 (4%)

Query  7    TNAYCETLRRSPLWRVSGRVAQAVGMTVESNGPVARVGDLCSIETDAGPRFAEVVGFRNR  66
             ++YC        W   GR+ +  +  +++  P   +G+LC I   +G  +AEVVG+   
Sbjct  16   PDGYCR-------W---GRIQDVSATLLNAWLPGVFMGELCCI--KPGEELAEVVGINGS  63

Query  67   RLILMPFSDLDRIHNGAVVKVVSEGLRVPTGPGILGRVVDGLGRPIDG--LGPVA-GEFQ  123
            + +L PF+    +H G  V  +    +VP G ++LGRV+DG+GRP+DG  L  V   ++ 
Sbjct  64   KALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY-  122

Query  124  DPIEQpppppMARTPVNQPLSVGVRAIDGLLTVGQGQRIGIFAGSGVGKSTLLGMIARYT  183
               +  PPP+M R P+ QPL  G+RAID++ T G+GQR+GIF+++GVGKSTLL+M+    
Sbjct  123  ---DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAP  179

Query  184  EADVTVIGLIGERGREVQDFIARELDEEGRKRAVVVAATSDQPPLMRIKGALTATAMAER  243
            +AD  V+ LIGERGREV++FI   L EE RKR V+V ATSD+P+L R+++ + AT++AE 
Sbjct  180  DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEF  239

Query  244  FRRQGRRVLLLMDSVTRFAMACREVGLAAGEPPTARGYTPSVFAALPKLLERTGTARTGS  303
            FR +G+RV+LL DS+TR+A A RE++LAAGE + +  Y P+VF+ALP+LLERTG +  GS
Sbjct  240  FRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGS  299

Query  304  ITAFYTVLVEGDDFNEPIADAVRGILDGHIVLSRKIAQQGLYPAIDVTASTSRLMNQVAE  363
            ITAFYTVLVEGDD NEP+AD VR++LDGHIVLSR++A++G YPAIDV A+ SR+   V+ 
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  364  TAHVraaarfkallaayeeaedlIQIGAYREGTRLEVDTALRLRPRMWAYLAQNRDVRSD  423
              H + AA ++  LA Y+E E LI+IG Y+ G   + D A+   P + ++L Q++D   +
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  424  MGEAVRQLMEMFNE  437
                + +L +++ E
Sbjct  420  PELLIEKLHQILTE  433

728) fliI in NC_014330


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1032),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 183/412 (45%), Positives = 277/412 (68%), Gaps = 20/412 (4%)

Query  37   FC--GKVKEVIGSLVVS--EGPFAKLGDICRIYKNDDTYIDAEVIGFRNQDVLLSTYGSV  92
            +C  G++++V ++L+ +   G F  +G++C I   ++    AEV+G+     LLS + S 
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVF--MGELCCIKPGEEL---AEVVGINGSKALLSPFTST  73

Query  93   NGITFGNMVYSFDKPLSIICSEKILGTVLNGMGKPLSGGG-----HKFYETPIPINHTSV  147
             G+  G+ V ++ +   +  +E +LG V++G G+PL G        K Y++  P      
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP------  127

Query  148  NPLNRPRIKKNIQTGVRAIDGLLTVGKGQRMAIMSGTGVGKSTLLSMIARNTNADVNVIA  207
             ++ R  I + + TG+RAID++ T G GQR++I S+ GVGKSTLL+M+    +AD NV+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  208  LIGERRREVLDFIERDLGEEGLKRSVVVVATSDDAPLLRVRAAYTATTIAEYFRDQGKDV  267
            LIGER REV +FI+  L+EE  KR V+VVATSD ++L RVRA + ATTIAE+FRD+GK V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  268  MFMVDSVTRFALAQREIGLSRGEPPTTRGYTPSVFSELAQLLERTGTSSKGTITAFYNVL  327
            +++ DS+TR+A A REI+L+ GE + +  Y P+VFS L++LLERTG + KG+ITAFY VL
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVL  307

Query  328  VEGDDLDEPITDAVRGILDGHIVLSRDLANRGHFPAIDINKSISRIMNEVVSNMHKKAAR  387
            VEGDD++EP++D VR++LDGHIVLSR LA+RGH+PAID+  ++SR+   V S+ H++ A 
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  388  EFLKMSADYNEVKELIMIGGYAKGSMPEVDRAIEYKPLMDRYLQQDMYELSS  439
             + +  A Y+EV  LI IG Y +G   + D+AI+  P +  +L+Q   E+ +
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

729) fliI in NC_018607


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1033),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 183/412 (45%), Positives = 277/412 (68%), Gaps = 20/412 (4%)

Query  37   FC--GKVKEVIGSLVVS--EGPFAKLGDICRIYKNDDTYIDAEVIGFRNQDVLLSTYGSV  92
            +C  G++++V ++L+ +   G F  +G++C I   ++    AEV+G+     LLS + S 
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVF--MGELCCIKPGEEL---AEVVGINGSKALLSPFTST  73

Query  93   NGITFGNMVYSFDKPLSIICSEKILGTVLNGMGKPLSGGG-----HKFYETPIPINHTSV  147
             G+  G+ V ++ +   +  +E +LG V++G G+PL G        K Y++  P      
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP------  127

Query  148  NPLNRPRIKKNIQTGVRAIDGLLTVGKGQRMAIMSGTGVGKSTLLSMIARNTNADVNVIA  207
             ++ R  I + + TG+RAID++ T G GQR++I S+ GVGKSTLL+M+    +AD NV+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  208  LIGERRREVLDFIERDLGEEGLKRSVVVVATSDDAPLLRVRAAYTATTIAEYFRDQGKDV  267
            LIGER REV +FI+  L+EE  KR V+VVATSD ++L RVRA + ATTIAE+FRD+GK V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  268  MFMVDSVTRFALAQREIGLSRGEPPTTRGYTPSVFSELAQLLERTGTSSKGTITAFYNVL  327
            +++ DS+TR+A A REI+L+ GE + +  Y P+VFS L++LLERTG + KG+ITAFY VL
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVL  307

Query  328  VEGDDLDEPITDAVRGILDGHIVLSRDLANRGHFPAIDINKSISRIMNEVVSNMHKKAAR  387
            VEGDD++EP++D VR++LDGHIVLSR LA+RGH+PAID+  ++SR+   V S+ H++ A 
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  388  EFLKMSADYNEVKELIMIGGYAKGSMPEVDRAIEYKPLMDRYLQQDMYELSS  439
             + +  A Y+EV  LI IG Y +G   + D+AI+  P +  +L+Q   E+ +
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

730) BPP43_04730 in NC_019908


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1032),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 183/412 (45%), Positives = 277/412 (68%), Gaps = 20/412 (4%)

Query  37   FC--GKVKEVIGSLVVS--EGPFAKLGDICRIYKNDDTYIDAEVIGFRNQDVLLSTYGSV  92
            +C  G++++V ++L+ +   G F  +G++C I   ++    AEV+G+     LLS + S 
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVF--MGELCCIKPGEEL---AEVVGINGSKALLSPFTST  73

Query  93   NGITFGNMVYSFDKPLSIICSEKILGTVLNGMGKPLSGGG-----HKFYETPIPINHTSV  147
             G+  G+ V ++ +   +  +E +LG V++G G+PL G        K Y++  P      
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP------  127

Query  148  NPLNRPRIKKNIQTGVRAIDGLLTVGKGQRMAIMSGTGVGKSTLLSMIARNTNADVNVIA  207
             ++ R  I + + TG+RAID++ T G GQR++I S+ GVGKSTLL+M+    +AD NV+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  208  LIGERRREVLDFIERDLGEEGLKRSVVVVATSDDAPLLRVRAAYTATTIAEYFRDQGKDV  267
            LIGER REV +FI+  L+EE  KR V+VVATSD ++L RVRA + ATTIAE+FRD+GK V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  268  MFMVDSVTRFALAQREIGLSRGEPPTTRGYTPSVFSELAQLLERTGTSSKGTITAFYNVL  327
            +++ DS+TR+A A REI+L+ GE + +  Y P+VFS L++LLERTG + KG+ITAFY VL
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVL  307

Query  328  VEGDDLDEPITDAVRGILDGHIVLSRDLANRGHFPAIDINKSISRIMNEVVSNMHKKAAR  387
            VEGDD++EP++D VR++LDGHIVLSR LA+RGH+PAID+  ++SR+   V S+ H++ A 
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  388  EFLKMSADYNEVKELIMIGGYAKGSMPEVDRAIEYKPLMDRYLQQDMYELSS  439
             + +  A Y+EV  LI IG Y +G   + D+AI+  P +  +L+Q   E+ +
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

731) SbBS512_A0183 in NC_010660


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1034),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 176/396 (45%), Positives = 274/396 (70%), Gaps = 10/396 (2%)

Query  16   ISGPILETSLSDVSIGEICNIQAGIESNEIIARAQVVGFHDEKTILSLIGNSRGLSRQTL  75
            +S+ +L++ L++V +GE+C I++G E       A+VVG+++ K++LS + ++ GL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  76   IKPTAQFLHTQVGRGLLGAVVNPLGEVTDKFAVTDNSEILYRPVDNAPPLYSERAAIEKP  135
            + +  +  +  VG +LLG V++ +G     +   + +E+  +  D  PP    R +I +P
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGR---PLDGRELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  136  FLTGVKVIDSLLTCGEGQRMGIFASAGCGKTFLMNMLIEHSSADIYVIGLIGERGREVTE  195
            ++TG++ IDS+ TCGEGQR+GIF+++G GK+ L+ ML + + AD  V+ LIGERGREV E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  196  TVDYLKNSEKKSRCVLVYATSDYSSVDRCNAAYIATAIAEFFRTEGHKVALFIDSLTRYA  255
             +D+  + E + RCV+V ATSD ++++R  A ++AT+IAEFFR +G +V L+ DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  256  RALRDVALAAGESPARRGYPVSVFDSLPRLLERPGKLKAGGSITAFYTVLLEDDDFADPL  315
            RA R++ALAAGE++    YP +VF +LPRLLER G +   GSITAFYTVL+E+DD  +PL
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMNEPL  317

Query  316  AEEVRSILDGHIYLSRNLAQKGQFPAIDSLKSISRVFTQVVDEKHRIMAAAFRELLSEIE  375
            A+EVRS+LDGHI LSR LA++G++PAID L ++SRVF  V  + HR +AA +R  L+  +
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  376  ELRTIIDFGEYKPGENASQDKIYNKISVVESFLKQD  411
            E+  +I +GEY+ G ++  DK  +  + + +FL+Q 
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

732) fliI in NC_016048


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1034),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 183/421 (44%), Positives = 285/421 (68%), Gaps = 5/421 (1%)

Query  12   ADTFSLTGRIENIVGMSIEASGGNAAVGDICRIYNGDTGDQVTAEVVGFKNDRILLMPYS  71
            +D +   GRI+++ +  ++A      +G++C I     G+++ AEVVG++  + LL P++
Sbjct  16   PDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEEL-AEVVGINGSKALLSPFT  71

Query  72   DMSGISAGNFVRNTGKQLTLPMGTFLRGRIINALGHPIDGGPPFENGCAHCVEGKYINPL  131
              +G+  G+ V    ++  +P+G  L GR+I+++G+P+DG   + + C    ++    ++
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAM  130

Query  132  SRPPITERMEFGIKAIDGLLTIGKGQRIGIFAGSGVGKSTLMGMIAKNVKADINVIALVG  191
             R PIT+ +  GI+AID++ T G GQR+GIF+++GVGKSTL++M+ +   AD NV+ L+G
Sbjct  131  VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG  190

Query  192  ERGREVLDFVRKDLGEEGMARSVLVVATSDQPAMLRKKCPSVATGVAEYFRDQGYDVLLM  251
            ERGREV +F+   L+EE   R V+VVATSD+PA+ R +   VAT +AE+FRD+G  V+L+
Sbjct  191  ERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLL  250

Query  252  MDSLTRFAMAQREIGLAVGEPPVARGYTPSIYAELPKLLERSGNFEKGSITGVYTVLVEG  311
             DSLTR+A A REI+LA GE +V+  Y P++++ LP+LLER+G  EKGSIT+ YTVLVEG
Sbjct  251  ADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEG  310

Query  312  DDTNEPISDTVRGILDGHIVLSRRLAAANHYPAIDVGASISRLMTDIVPMESRRAAGRIR  371
            DD NEP++D VR++LDGHIVLSRRLA   HYPAIDV A++SR+   + + E R+ A+ +R
Sbjct  311  DDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILR  370

Query  372  DIMSVYEKSSDLVSIGAYKAGTNPKLDYALSKIDAIDDFLKQGVDESFSYEDTARQMEQI  431
              +++Y+    L+ IG Y+ G +   D A+     I  FL+Q+ DE  + E    +++QI
Sbjct  371  RRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

Query  432  L  432
            L
Sbjct  431  L  431

733) fliI in NC_008599


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1031),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 173/367 (48%), Positives = 261/367 (72%), Gaps = 3/367 (0%)

Query  54   NELGMVTGLNQTGASVSPFGFVEGFKIGDRVYASDQGMSIPVGESLLGRVVDPFMNPKDS  113
            +EL+ V G+N + A +SPF    G+  G++V A  +   +PVGE+LLGRV+D F  P D+
Sbjct  52   EELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG  111

Query  114  KGAIEATTYVPIMQMPIPAMKRGLINEPFSVGVKTIDGLLTCGKGQKLGIFAGSGVGKST  173
            +  +          MP PAM R  I +P+  G+++ID++ TCG GQ++GIF+++GVGKST
Sbjct  112  R-ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  174  LMGMIVKNSVAPIKVVALIGERGREVPEFIEKNLNGDLSN-TVIIVATSDDSPLMRKYGA  232
            L++M+ + + A  +V+ LIGERGREV EFI+  L+ +  +  VI+VATSD ++L R  + 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  233  FCAMSVAEYFKSSGRDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLTILPQLME  292
            F A ++AE+F+ +G+ V+++ DS+TR+A A REI+LA GE + S  YPP+V++ LP+L+E
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  293  RAGKEEGKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNS  352
            R+G  E KGSITAF+TVLVEGDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++L +
Sbjct  291  RTGMGE-KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  353  ASRVMGDVTSKEHRANASKFKRLFSMLKENEVLIRIGAYQKGIDKELDSAISKKGFMEEF  412
             SRV   VTS EHR  A+ ++R +++ +E E+LIRIG YQ+G+D + D AI     +  F
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  413  MKQNPTE  419
            ++Q+  E
Sbjct  410  LRQSKDE  416

734) Slip_0956 in NC_014220


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1031),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 191/398 (48%), Positives = 284/398 (72%), Gaps = 8/398 (2%)

Query  26   GRISQVVGLTIESDGPRARMGELCLVRSPGRSDKPLRCEVVGFKGNKTLLMPLGELDGIG  85
            GRI +V +  +++  P   MGELC +++          EVVG++G+K+LL P+    G+ 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEELA-----EVVGINGSKALLSPFTSTAGLH  77

Query  86   PGSEIVATGQTFKvrvgrslvgrvlnglgEPIDGGG-PVETETTYPVMNHPPDPLKRRRI  144
             G +++A  +  +V VG +L+GRV++G+G P+DG   P      Y  M  PP ++ R+ I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM--PPPAMVRQPI  135

Query  145  TEVLPVGVRAIDALVTVGKGQRMGILAGSGVGKSTLLGMIARNTEADVSVIALIGERGRE  204
            T+ L  G+RAID++ T G GQR+GI++++GVGKSTLL+M+    +AD +V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  205  VRDFLERDLGEEGLKRSVVVVATSDQPALIRLRGAFVATSIAEFFRDQGLDVLLLMDSLT  264
            VR+F++  L+EE  KR V+VVATSD+PAL R+R+ FVAT+IAEFFRD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  265  RFALAQREIGLAIGEPPATRGFTPSVFALLPKLLERAGASDKGTITGLYAVLVEGDDMNE  324
            R+A A REI+LA GE + +  + P+VF+ LP+LLER+G ++KG+IT++Y+VLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  325  PITDAVRGIVDGHIALTRELASLNHFPAIDVLGSISRVMPEIVSSSHLESAGRFRSLLAV  384
            P++D VR+++DGHI L+R LA   H+PAIDVL+++SRV P + S  H + A+ +R  LA+
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  385  YREAKDLVDIGAYRRGANPRIDEALELIDGCNAFLQQG  422
            Y+E   L+ IG Y+RG +   D A++   +  +FL+Q+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

735) AciX9_4144 in NC_015057


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  276 bits (1031),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 193/416 (47%), Positives = 292/416 (71%), Gaps = 8/416 (1%)

Query  19   RWSGRVLQVIGNLVESEGPSCSVGDECEIITREGRSFSGEVVGFRGSTMLTMTLQLPQGI  78
            RW GR+ +V + L+++  P+  +G+ C I  + G  ++ EVVG+ GS  L   +    G+
Sbjct  21   RW-GRIQDVSATLLNAWLPGVFMGELCCI--KPGEELA-EVVGINGSKALLSPFTSTAGL  76

Query  79   RYGDRIIATGSRPSIRVGPELLGRVIDGTGEPLDSLG-PYGSRRSMPVDAAAPLPLDRLP  137
            + G++++A   R  + VG  LLGRVIDG G PLD+   P   ++    DA +P ++ R P
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQP  134

Query  138  IRNTLGCGVRAIDAFITCGRGQRLGIFGGSGVGKSTLLGMMARGTEADLTVMALIGERGR  197
            I + L  G+RAID+  TCG GQR+GIF+++GVGKSTLL+M+  + +AD  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  198  EVQEFLE-VIGEEGRKKSILVVSTSDQSPLLKMRaalaataiaeyfaaEGKNVLLVVDSL  256
            EV+EF++  ++EE RK+ ++VV+TSD+++L ++RA + AT+IAE+F  +GK V+L+ DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  257  TRFAMAQREIGLAAGEPPTSKGYTPSVINTLARLVERAGNFNKGSITAFYTVLMEGDDQQ  316
            TR+A A REI+LAAGE + S  Y P+V+++L+RL+ER+G  +KGSITAFYTVL+EGDD +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  317  DPVVDTVRSLLDGHVILDRNLALQNHYPPISVLDSLSRLMSSIAAPEHLGKARALRILLA  376
            +P+ D VRSLLDGH++L R LA + HYP+I VL +LSR+ + +++ EH   A  LR  LA
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  377  SYKRSEDLIRIGAYQKGFDTVLDRAVEVLPELNRFLQQTSEETPRFAAVAKRLNEM  432
             Y+  E LIRIG YQ+G DT  D+A++  P++  FL+Q+ +E      +  +L+++
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

736) Plim_3098 in NC_014148


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  275 bits (1030),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 189/379 (50%), Positives = 272/379 (72%), Gaps = 4/379 (1%)

Query  37   LGSRCAIDRDHGFPIEADVVGFRGDETLLMPLGELTGVRRGARVRLVESVPCVNVGAGLL  96
            +G  C I  ++ +   A+VVG+ G  +LL P+   +G++ G +V  +     V VG +LL
Sbjct  42   MGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  97   GRIIGSRGEFLDEGSKPLLAHRADLHGKPPGPLERPRIAKIWQTGVRAIDSLLTLGEGQR  156
            GR+I++ G  LD    P +  + D ++ PP ++ R  I++   TG+RAIDS+ T GEGQR
Sbjct  99   GRVIDGFGRPLDGRELPEVC-WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  157  MGIFAGSGVGKSTLLGQIARHSSADINVVALIGERGREVREFLDRDLGPEGLKRSVVIVA  216
            +GIF+++GVGKSTLL+ +   + AD NV+ LIGERGREVREF+D  L+ E  KR V++VA
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  217  TGDEPAILRLRAAWMATAIAEHFRDLGQHVVLMMDSVTRFALAQREIGLAAGEPPATRGY  276
            T+D PA+ R+RA  +AT+IAE FRD G++VVL+ DS+TR+A A REI+LAAGE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  277  PPSVFALLPRLLERSGCSPAGSITGLYTVLVDGDDTNEPISDTVRGILDGHIVLSRKLAQ  336
            PP+VF+ LPRLLER+G +  GSIT++YTVLV+GDD NEP++D VR++LDGHIVLSR+LA+
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  337  QGQFPAIDVLQSISRSMNDITTTEHRQWALTVRQLLSSYQQNEDLISIGAYQNGSNALID  396
            +G++PAIDVL ++SR    +T+ EHRQ A  +R+ L+ YQ+ E LI IG YQ G ++  D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  397  SAIQARPQILGYLGQKPQE  415
             AI++ P+I  +L Q  +E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

737) fliI in NC_020055


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  275 bits (1030),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 174/364 (48%), Positives = 252/364 (70%), Gaps = 3/364 (0%)

Query  57   AEVVGFKDGACLFMPYGELHGISPGSLIKNSSAPPEVPVGMNLLGRAVDAFGQPIDGKGP  116
            AEVVG++++  L+ P+    G+  G  +       +VPVG  LLGR +D+FG+P+DG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  117  IIPE-SFNPLHRDPPNPLERPRINEPLDVGVKAINSLLTLGKGQRMGIMAGSGVGKSTLL  175
             +PE   +  +  PP ++ R  I +PL  G++AI+S+ T G GQR+GI +++GVGKSTLL
Sbjct  114  -LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  176  SMMARYTLADINVIALIGERGREVVEFIERDLGPEGLARSILVIATSDKSPLIRMRAAYT  235
            +M+     AD NV+ LIGERGREV EFI+  L+ E   R ++V+ATSD+++L R+RA + 
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  236  ATAIAEYFRDLNKDVLLMMDSVTRFAMAGREVGLAAGEPPTRGGYTPSVFAQLPKLLERA  295
            AT+IAE+FRD  K V+L+ DS+TR+A A+RE++LAAGE +  G Y P+VF+ LP+LLER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  296  GKNRNGSITGIYTVLVDGDDFTEPIADATRSILDGHIVLTRDLADQGHYPCIDVLKSVSR  355
            G   +GSIT++YTVLV+GDD  EP+AD  RS+LDGHIVL+R LA++GHYP IDVL ++SR
Sbjct  293  GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  356  VRGDIVQNEIVAAGRKVLGQLATFRKVEDMVNIGAYQSGANPDIDTAIKMQPAINGFLQQ  415
            V   +  +E    +  +  +LA ++ VE ++ IG YQ G + D D AI   P I  FL+Q
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  416  LVEE  419
              +E
Sbjct  413  SKDE  416

738) Mar181_0808 in NC_015559


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  275 bits (1030),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 183/384 (48%), Positives = 273/384 (72%), Gaps = 14/384 (3%)

Query  42   VALGDRCAVQVGKERWVESEVVGFTGDLTYLMPTEAIEGISPGARVRPLLDESKMPVGDE  101
            V +G+ C ++ G E    +EVVG+ G  + L P  +  G+  G +V +L    ++PVG+ 
Sbjct  40   VFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEA  96

Query  102  LLGRVVNGLGKPLDGKG--PINTQDSVGLHGGIINPLQRKPITETLDVGIKAINSLLTVG  159
            LLGRV++G+G+PLDG+    +  +D  ++      ++ R+PIT+ L  GI+AI+S+ T G
Sbjct  97   LLGRVIDGFGRPLDGRELPEVCWKDYDAMPP---PAMVRQPITQPLMTGIRAIDSVATCG  153

Query  160  KGQRLGLFAGSGVGKSILLGMMTRFTEADITIVGLIGERGREVKEFIEQILGEEGLARSV  219
             GQR+G+F+++GVGKS LL+M+    +AD  ++ LIGERGREV+EFI+  L+EE   R V
Sbjct  154  EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCV  213

Query  220  VVASPADDSalmrlraamlaTRIAEYYRDQGKNVLLLMDSLTRYAQAQREIALSVGEPPA  279
            +V + +D +AL R+RA  +AT IAE++RD+GK V+LL DSLTRYA+A REIAL+ GE + 
Sbjct  214  IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAV  273

Query  280  TKGYPPSVFSKLPQLVERAGNGHEGSGSVTAFYTVLTEGDDQQDPIADASRAILDGHIVL  339
            +  YPP+VFS LP+L+ER+G G+   GS+TAFYTVL EGDD ++P+AD  R++LDGHIVL
Sbjct  274  SGEYPPGVFSALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  340  SRRLAEEGHYPAIDIEASISRAMPQIVSEDH--LYGAMRVKQLYSKFQQNQDIISVGAYA  397
            SRRLAE GHYPAID+ A++SR  P + S++H  L + +R ++L + +Q+ + +I +G Y 
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILR-RRL-ALYQEVELLIRIGEYQ  389

Query  398  QGSDPDLDQAIVQMPEIRSFLQQA  421
            +G D D D+AI   P+I +FL+Q+
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQS  413

739) fliI in NC_022223


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  275 bits (1030),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 175/397 (45%), Positives = 273/397 (69%), Gaps = 9/397 (2%)

Query  43   IGSLCKVETMSGEMEAEVVGFSGDNLYLMPSEQITGVLPGAKVTPMTGDAGLPVGMELLG  102
            +G LC +   +GE  AEVVG++G +  L P    +G+  G +V ++     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTEKRASFNADPINPLARKPITEPLDVGLKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +  ++A P  ++ R+PIT+PL  G++AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGVDGRQRSVVVA  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+ + R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  APADSSPLMRLKGCQTALAIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A +IAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTDEHLLMSKAVRQILSICRKNQDLVSIGAYKPGTDP  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDSAFTLKPRLDEYLQQGMKDSVPYDMCVNMLKHVL  437
              D A+   P +  +L+Q+  +    ++ ++ L ++L
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

740) VAA_04454 in NC_015633


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  275 bits (1030),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 175/397 (45%), Positives = 273/397 (69%), Gaps = 9/397 (2%)

Query  43   IGSLCKVETMSGEMEAEVVGFSGDNLYLMPSEQITGVLPGAKVTPMTGDAGLPVGMELLG  102
            +G LC +   +GE  AEVVG++G +  L P    +G+  G +V ++     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTEKRASFNADPINPLARKPITEPLDVGLKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +  ++A P  ++ R+PIT+PL  G++AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGVDGRQRSVVVA  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+ + R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  APADSSPLMRLKGCQTALAIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A +IAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTDEHLLMSKAVRQILSICRKNQDLVSIGAYKPGTDP  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDSAFTLKPRLDEYLQQGMKDSVPYDMCVNMLKHVL  437
              D A+   P +  +L+Q+  +    ++ ++ L ++L
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

741) fliI in NC_007406


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  275 bits (1029),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 181/381 (48%), Positives = 269/381 (71%), Gaps = 3/381 (0%)

Query  55   AEVVGFNGDNAVVMPFASLDGVRRGCRALVANASDSVRPAAAWLGRVLNALGEPIDGKGP  114
            AEVVG+NG +A++ PF+S  G++ G + +     + V  + A LGRV++++G P+DG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  115  LPQGPTPVPYRNSPPSAHSRQRVGQPLDLKVRALNTFLTCCRGQRLGIFAGSGVGKSVLL  174
            LP+      Y   PP+A  RQ + QPL   +RA+++  TC  GQR+GIF+++GVGKS LL
Sbjct  114  LPEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  175  SMLARNADADVSVIGLIGERGREVQEFLQDDLGDEGLARSVVVVATSDEPALMRRQAAYL  234
            +ML   +DAD +V+ LIGERGREV+EF++  L++E   R V+VVATSD PAL R +A ++
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  235  TLAIAEFFRDEGRDVMCMMDSVTRFAMAQREIGLSTGEPPTTKGYTPTVFTELPRLLERA  294
            + +IAEFFRD+G+ V+ + DS+TR+A A REI+L++GE + +  Y P VF+ LPRLLER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  295  GPGADKGTITGIFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINILKSVS  354
            G G +KG+IT+++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG+YPAI++L ++S
Sbjct  293  GMG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  355  RTMPRSADPAFLPDITCARRMMATYSDMEELIRLGAYRAGSNAEVDEAIRLNPVLEDFLR  414
            R  P  +        +  RR +A Y ++E LIR+G Y+ G +++ D AI   P +  FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  415  QAKDEVTSIEDGYRRLQQIVN  435
            Q+KDEV + E    +L+QI+ 
Sbjct  412  QSKDEVCGPELLIEKLHQILT  432

742) hrcN in NC_004578


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  275 bits (1027),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 202/397 (51%), Positives = 284/397 (72%), Gaps = 20/397 (5%)

Query  35   LLECKIPAAKVGDLCEVSKADGSFLLAEIVGFTQECTLLSALGAPDGIQVGAPIRPLGIA  94
            LL+  +P+  +G+LC +  ++    LAE+VG+    +LLS++ +  G++ G  + +L   
Sbjct  32   LLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRR  88

Query  95   HRIGVDDTLLGCVLDGFGRPLLGD-----CLGAFAGPDDRRDTLPVIADALPPTQRPRIT  149
            H++ V+++LLG V+DGFGRPL G      C   +       D++P      P+  R  IT
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY-------DAMPP-----PAMVRQPIT  136

Query  150  RSLPTGIRAIDSAILLGEGQRVGLFAGAGCGKTTLMAELARNMDCDVIVFGLIGERGREL  209
            ++L TGIRAIDS    GEGQRVG+F+++G GK+TL+A L    D D  V+ LIGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  210  REFLDHELDETLRARSVLVCATSDRSSMeraraaftataiaeafrarGQKVLLLLDSLTR  269
            REF+D  L E  R R V+V ATSDR+++ER RA F AT+IAE FR  G++V+LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  270  FARAQREIGIASGEPLGRGGLPPSVYTLLPRLVERAGMSENGSITALYTVLIEQDSMNDP  329
            +ARA REI++A+GE    G  PP+V++ LPRL+ER+GM+E+GSITA+YTVL+E D MN+P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  330  VADEVRSLLDGHIVLSRKLAERGHYPAIDVSASISRILSNVTGRDHQRANNRLRQLLAAY  389
            +ADEVRSLLDGHIVLSR+LAERGHYPAIDV A++SR+++ VT+++H++    LR+ LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  390  KQVEMLLRLGEYQAGADPVTDCAVQLNDAINAFLRQD  426
            ++VE+L+R+GEYQ G D  TD A++    I +FLRQ 
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

743) fliI in NC_017243


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  275 bits (1028),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 185/409 (46%), Positives = 275/409 (68%), Gaps = 18/409 (4%)

Query  33   YGKVKEVIGSLVIS--EGPFCKLGDMCRIYMNDDTYLDAEAIGFRNQDVLLATFGPVNGI  90
             G++++V ++L+ +   G F  +G++C I   ++    AE +G+     LL+ F +  G+
Sbjct  22   WGRIQDVSATLLNAWLPGVF--MGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  91   TFGNMVYSFERPLSVMCCDEILGTVLDARGKPLAGGG-----HNFYETPIPVSHNAVNPM  145
              G+ V ++ R   V   + +LG V+D+ G+PL G        + Y++  P       +M
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP------PAM  130

Query  146  NRPRIKKHIQTGVRAIDGLLTVGQGQRMAIMSGTGVGKSTLLSMIARNTNADVNVIALIG  205
             R  I + + TG+RAID++ T G+GQR++I S+ GVGKSTLL+M+    +AD NV+ LIG
Sbjct  131  VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG  190

Query  206  ERRREVRDFIERDLGEEGLKRSVLVVATSDDAPLLRVRAAYTATTIAEYFRDKGKNVMFM  265
            ER REVR+FI+  L+EE  KR V+VVATSD ++L RVRA + ATTIAE+FRD+GK V+++
Sbjct  191  ERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLL  250

Query  266  VDSVTRFALAQREIGLSRGEPPTTRGYTPSVFSELAKLLERTGTSNKGSITAFYNVLVEG  325
             DS+TR+A A REI+L+ GE + +  Y P+VFS L++LLERTG ++KGSITAFY VLVEG
Sbjct  251  ADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEG  310

Query  326  DDLDEPITDAVRGILDGHIVLSRDLANRGHFPAIDVNKSISRIMNEVVSNMHKRAAREFL  385
            DD++EP++D VR++LDGHIVLSR LA+RGH+PAIDV  ++SR+   V S+ H++ A  + 
Sbjct  311  DDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILR  370

Query  386  KMSADYNEAKELIMIGGYAKGSMPEVDRAIDYKPMMDRYLQQDVYEVSS  434
            +  A Y+E   LI IG Y +G   + D+AID  P +  +L+Q   EV +
Sbjct  371  RRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

744) fliI in NC_009485


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  275 bits (1027),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 188/420 (45%), Positives = 286/420 (69%), Gaps = 11/420 (2%)

Query  17   YGRVVGVKGLMVEIAGPIHAMSVGARIVIETGNNVIPAEVIGFSGKNAVVMPFAGLEGVR  76
             GR+ +V + +++  + + ++ +G    I  G+++  AEV+G++G +A++ PF++  G++
Sbjct  22   WGRIQDVSATLLN--AWLPGVFMGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLH  77

Query  77   RGCRAVIANAANQVRPSPAWLGRVINAMGEPIDGKGPLPQGAAPVPYRNNPPPAHSRKRV  136
             G + +     +QV  + A LGRVI++ G P+DG+  LP+      Y   PPPA  R+ +
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWK-DYDAMPPPAMVRQPI  135

Query  137  GSPLDLGVRALNTFLTCCRGQRLGIFAGSGVGKSVLLSMLARNVDAAVSVIGLIGERGRE  196
              PL  G+RA+++  TC  GQR+GIF+++GVGKS LL+ML    DA  +V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  197  VQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYLTLAISEYFRDEGKDVLCLMDSVT  256
            V+EF++  L+EE   R V+VVATSD PAL R +A +++ +I+E+FRD+GK V+ L DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  257  RFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAGPGSGEGTITGIFTVLVDGDDHN  316
            R+A A REI+L+AGE + +  Y P VF+ LP+LLER+G G   G+IT+++TVLV+GDD N
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG-EKGSITAFYTVLVEGDDMN  314

Query  317  EPVADAVRGILDGHVVMQRSIAERGRYPAINILKSVSRTMP--KSADPVFLPTIMRARQV  374
            EP+AD VR++LDGH+V+ R +AERG+YPAI++L ++SR  P   S +   L++I+R R  
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR--  372

Query  375  MATYADMEELIRLGAYRAGSSPEVDEAIRLHEPLEAFLRQRKDEVCGLAQGYRELEQILG  434
            +A Y ++E LIR+G Y+ G   + D AI     + +FLRQ KDEVCG       L+QIL 
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

745) fliI in NC_017094


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  275 bits (1028),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 174/396 (44%), Positives = 276/396 (70%), Gaps = 6/396 (1%)

Query  53   IGELCEIRGDRPIPAEVIGFREGRSLLMPLGDLRGVRPGTRVIRKESRPVVRVSDRFLGR  112
            +GELC I+ +  + AEV+G+  +++LL P+    G++ G +V+    R  V V++ +LGR
Sbjct  42   MGELCCIKPGEEL-AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGR  100

Query  113  VLDPMGRAIDGGADPSGERSMALYGE-PINPMGRRRISHVLDLGIRSVNSFLTIGQGQKI  171
            V+D  GR++DG   P   +    Y+  P  +M R+ I++ L  GIR+++S  T G+GQ++
Sbjct  101  VIDGFGRPLDGRELPEVCWKD--YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  172  GVFAGAGVGKSMLLGMLSKDAKVDVTVIALIGERGREVREFIERDLGEDGLAKAVLVAST  231
            G+F+++GVGKS LL+ML + +  D  V+ LIGERGREVREFI+  L+E+   + V+V +T
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  232  GDQSPLLRIRGALMAMSIAEYFRDQGKSVLFVMDSLTRFAMALREVGLAAGEPPTTRGYT  291
            +D+++L R+R+ ++A +IAE+FRD+GK V+++ DSLTR+A A RE++LAAGE + +  Y 
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  292  PSVFAQLPRFLERSGCVDGDGSITGIYTVLVEGGDMPSDPLSEALAAILDGHVILSREMA  351
            P+VF+ LPR+LER+G ++  GSIT++YTVLVEG+DM ++PL++ + ++LDGH++LSR +A
Sbjct  279  PGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDM-NEPLADEVRSLLDGHIVLSRRLA  336

Query  352  SEGIYPAIDLLESRSRVMNDIVDEEHRAMVREFLRLYALYRKSEDLIRIGAYVPGSDADL  411
              G YPAID+L + SRV   +  +EHR +   + R  ALY+  E LIRIG Y  G D+D 
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  412  DRAVYLYPRMRDFLEQDRNERYSFEESLETLRSLLA  447
            D+A+  YP +  FL Q ++E  + E  +E L+ +L+
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

746) fliI in NC_009348


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  275 bits (1027),  Expect = 6e-75, Method: Compositional matrix adjust.
 Identities = 191/382 (50%), Positives = 271/382 (71%), Gaps = 7/382 (1%)

Query  44   IGALCRIDTQDGELEAEVVGFSGDRLFLMPSEQLKGVIPGARVVPMTEEHGIPVGMNLLG  103
            +G LC I   + EL AEVVG++G + +L P     G+  G +V+++   H +PVG  LLG
Sbjct  42   MGELCCIKPGE-EL-AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  104  RVIDGIGQPLDGLG-PILSSQTVQFAQHRINPLSRRPIHQPMDVGVRAINAVLTVGQGQR  162
            RVIDG+G+PLDG   P +  +  ++      ++ R+PI QP+  G+RAI++V T G+GQR
Sbjct  100  RVIDGFGRPLDGRELPEVCWK--DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  163  MGLFAGSGVGKSVLLGMMTRGSVADVVVVGLIGERGREVKEFIEDILGEEGrarsvvvaa  222
            +G+F+++GVGKS LL+M+  ++ AD  V+ LIGERGREV+EFI+  L+EE R R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  223  padaspLMRLKGCETALAIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGY  282
             +D ++L R+++   A +IAE+FRD+G  V+LL DSLTRYA+A REIALA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  283  PPSVFAKLPALVERAGNGSDGQGSITAFFTVLTEGDDLQDPIADAARAILDGHIVLSREL  342
            PP+VF+ LP L+ER+G G   +GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR L
Sbjct  278  PPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  343  ADAGHYPAIDIEKSISRVMPMVTSPEHMDLARTLKQFYSLYQQNRDLITIGAYSQGSDPR  402
            A+ GHYPAID+  ++SRV P+VTS EH +LA  L++  +LYQ+   LI IG Y +G D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  403  IDRAIVHKPYLDQFLQQGMREV  424
             D+AI   P +  FL+Q+  EV
Sbjct  396  TDKAIDTYPDICTFLRQSKDEV  417

747) hrcN in NC_005773


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  274 bits (1024),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 201/397 (51%), Positives = 284/397 (72%), Gaps = 20/397 (5%)

Query  35   LLECKIPAAKVGDLCEVSKADGSFLLAEIVGFTQECTLLSALGAPDGIQVGAPIRPLGIA  94
            LL+  +P+  +G+LC +  ++    LAE+VG+    +LLS++ +  G++ G  + +L   
Sbjct  32   LLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRR  88

Query  95   HRIGVDDSLLGCVLDGFGRPLLGD-----CLGAFAGPDDRRETLPVIADALPPTQRPRIT  149
            H++ V+++LLG V+DGFGRPL G      C   +       +++P      P+  R  IT
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY-------DAMPP-----PAMVRQPIT  136

Query  150  NALPTGVRAIDSAILLGEGQRVGLFAGAGCGKTTLMAELARNMGCDVIVFGLIGERGREL  209
            ++L TG+RAIDS    GEGQRVG+F+++G GK+TL+A L    + D  V+ LIGERGRE+
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  210  REFLDHELDETLRARSVLVCATSDRSSMeraraaftataiaeafrarGQKVLLLLDSLTR  269
            REF+D  L E  R R V+V ATSDR+++ER RA F AT+IAE FR  G++V+LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  270  FARAQREIGIASGEPLGRGGLPPSVYTLLPRLVERAGMSENGSITALYTVLIEQDSMNDP  329
            +ARA REI++A+GE    G  PP+V++ LPRL+ER+GM+E+GSITA+YTVL+E D MN+P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  330  VADEVRSLLDGHIVLSRKLAERGHYPAIDVSASISRILSNVTGREHQRANNRLRQLLAAY  389
            +ADEVRSLLDGHIVLSR+LAERGHYPAIDV A++SR+++ VT++EH++    LR+ LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  390  KQVEMLLRLGEYQAGADPVTDCAVQLNDDINEFLRQD  426
            ++VE+L+R+GEYQ G D  TD A++   DI  FLRQ 
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

748) Taci_1334 in NC_013522


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  274 bits (1024),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 192/415 (47%), Positives = 291/415 (71%), Gaps = 9/415 (2%)

Query  24   GRVVQVVGLVIESQGPDVQVGDLCEISFRNRRNPLKAEVVGFRSDRVLLMPLGDLNDIGP  83
            GR+ +V + ++++  P+V +G+LC I    +     AEVVG+ + + LL P+    ++  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI----KPGEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  84   GCDVAALGPTLGVHVGEDLLGRILDGLGNPID--DLGPVGASEFYPLYAPPPHPLKRQMI  141
            G +V AL     V VGE LLGR++DG+G P+D  +L  V   ++ ++   PP ++ RQ I
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPI  135

Query  142  DRPLSVGVRVIDGLLTLGQGQRVGIFAGSGVGKSVLLGMMARNTEADVNVIALvgergre  201
             +PL  G+R ID++ T G+GQRVGIF+++GVGKS LL+M+    +AD NV+ L+GERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  202  vrefverDLGPEGLKRSVVVVATSDQPPLVRLKASLTATAVAEYFRDQGANVLLMMDSVT  261
            VREF++  L+ E  KR V+VVATSD+P+L R++A + AT++AE+FRD+G  V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  262  RVAMAQRDVGLAIGEPPATKGYTPSVFAFLPRLLERSGAGDRGSITAIYTVLVEGDDMNE  321
            R A A R+++LA GE + +  Y P+VF+ LPRLLER+G G++GSITA+YTVLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  322  PVADTVRGILDGHIVLSRSLAAKNHYPSVEVGRSVSRVMPHIVSREHLESAGRVRELLAV  381
            P+AD VR++LDGHIVLSR LA + HYP+++V  ++SRV P + S+EH + A+ +R  LA+
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  382  YEEAQDLVNIGAYKAGSNPRIDWALANLEDVRNFLRQGMHERSSFDETVSRLLEL  436
            Y+E + L+ IG Y+ G +   D A+    D+  FLRQ+ +E  + +  + +L ++
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

749) Desaf_1835 in NC_016629


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  274 bits (1024),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 182/403 (46%), Positives = 276/403 (69%), Gaps = 10/403 (2%)

Query  19   FGKITKVVGLVAEGRGIKAPVGAVCHLVPHEPGGESLAAEIVGFRDGACLFMPYGDMRGV  78
             G+I  V + + +++     +G +C + P    GE LA E+VG+ ++  L+ P+    G+
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKP----GEELA-EVVGINGSKALLSPFTSTAGL  76

Query  79   RPGSLIQNSSNPPHFPVGFGFLGRALDAFGAPLDGRDAPAP--EAYYPLHTEPPNPLTRP  136
            + G  +       + PVG ++LGR +D+FG PLDGR+ P      Y   ++ PP ++ R 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY---DAMPPPAMVRQ  133

Query  137  RINEPLDVGVRAVNALLTLGKGQRVGIMAGSGVGKSTVMGMMARYTKADVNVIALVGERG  196
             I +PL  G+RA++++ T G GQRVGI +++GVGKST+++M+     AD NV+ L+GERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  197  REVVEFMERDLGPEGMKRSVLVVATSDTSPLVrmraayaatamaEFFRDQGKDVLLMMDS  256
            REV EF++  L+ E  KR V+VVATSD ++L R+RA + AT++AEFFRD+GK V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  257  VTRFCMAGREVGLAAGEPPTRGGFTPSVFAHLPKLLERAGKSAKGSITGIYTVLVDGDDF  316
            +TR+  A+RE++LAAGE +  G + P+VF+ LP+LLER+G + KGSIT++YTVLV+GDD 
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  317  TEPVADATRSILDGHIVLTRELADAGHYPSIDVLKSVSRLRSDITSPEAQVAGRTLIRHM  376
             EP+AD  RS+LDGHIVL+R LA+ GHYP+IDVL ++SR+ + +TS E +  +  L R++
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  377  ATFKRVEDMVNIGAYAQGSNPEIDKALKMIGPINDFLRQGVDE  419
            A ++ VE ++ IG Y +G + + DKA+     I  FLRQ+ DE
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

750) Bmur_0360 in NC_014150


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  274 bits (1024),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 183/408 (45%), Positives = 274/408 (68%), Gaps = 16/408 (3%)

Query  33   YGKVKEVIGSLVIS--EGPFCKLGDMCRIYMNDDTYLDAEAIGFRNQDVLLATYGPVNGI  90
             G++++V ++L+ +   G F  +G++C I   ++    AE +G+     LL+ + +  G+
Sbjct  22   WGRIQDVSATLLNAWLPGVF--MGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  91   TFGNMVYSFERPLSVMCCDEILGTVLDARGKPLAGGGHNFYETPVAVSHN----AVNPMN  146
              G+ V ++ R   V   + +LG V+D+ G+PL G      E P     +    +  +M 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-----ELPEVCWKDYDAMPPPAMV  131

Query  147  RPRIKKHIQTGVRAIDGLLTVGQGQRMAIMSGTGVGKSTLLSMIARNTNADVNVIALIGE  206
            R  I + + TG+RAID++ T G+GQR++I S+ GVGKSTLL+M+    +AD NV+ LIGE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  207  RRREVRDFIERDLGEEGLKRSVLVVATSDDAPLLRVRAAYTATTIAEYFRDKGKNVMFMV  266
            R REVR+FI+  L+EE  KR V+VVATSD ++L RVRA + ATTIAE+FRD+GK V+++ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  267  DSVTRFALAQREIGLSRGEPPTTRGYTPSVFSELAKLLERTGTSNKGTITAFYNVLVEGD  326
            DS+TR+A A REI+L+ GE + +  Y P+VFS L++LLERTG ++KG+ITAFY VLVEGD
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  327  DLDEPITDTVRGILDGHIVLSRDLANRGHFPAIDVNKSISRIMNEVVSNMHKKAAREFLK  386
            D++EP++D VR++LDGHIVLSR LA+RGH+PAIDV  ++SR+   V S+ H++ A  + +
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  387  MSADYNEAKELIMIGGYAKGSMPEVDRAIDYKPMMDRYLQQDVYEVSS  434
              A Y+E   LI IG Y +G   + D+AID  P +  +L+Q   EV +
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

751) fliI in NC_015722


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  274 bits (1024),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 165/383 (44%), Positives = 265/383 (70%), Gaps = 7/383 (1%)

Query  42   YIGSRCQIEARDDHHILAEVIGFEENTTLLMPFDNINGIGVGAVIRVIANDQLIYPTKQW  101
            ++G  C I + ++   LAEV+G++ + +LL PF +  G+  G  +  +   + +      
Sbjct  41   FMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  102  VGRVLNAFGEPIDGKGPLPLGNKAYSLHSTPPAPQARKRVGEKLNVGIRAINTFLSCCKG  161
            +GRV+++FG P+DG+    +  K Y  ++ PP++  R+ + + L  GIRAI++  +C  G
Sbjct  98   LGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  162  QRMGIFSGSGVGKSMMMAMMTKFASADIKIIGLIGERGREVQEFIEDYLGEEGLRKAVVV  221
            QR+GIFS++GVGKS ++AM+ + + AD +++ LIGERGREV+EFI+  L+EE  ++ V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  222  VATSDESALKRRRAAYLTLTLSEYFRDSNLEVLCMLDNITRFAMAQREIGLAVGEPPTTK  281
            VATSD +AL R RA +++ T++E+FRD+   V+ + D++TR+A A REI+LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  282  GYPPSVFSGLPSLLERAGPGTHDQASITAFFSVLVEGDDTNEPIADAVRGILDGHIVLDR  341
             YPP+VFS+LP LLER+G G  +++SITAF++VLVEGDD NEP+AD VR++LDGHIVL R
Sbjct  276  EYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  342  DIAGRGIFPAIDVAKSISRTMPRCNNDKENELIQKAKKLIATYNDMADMVRIGAYKKGTD  401
             +A RG +PAIDV  ++SR  P   ++ + +L    ++ +A Y+++  ++RIG Y++G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  402  KEVDEAIQYYDKICSFISQKYNE  424
             + D AI+ Y  IC+F+ Q  +E
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDE  416

752) Ssed_0074 in NC_009831


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  274 bits (1024),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 187/429 (44%), Positives = 293/429 (69%), Gaps = 15/429 (3%)

Query  20   RVPVAQVYGRLTRVNGL---LLEAVGCQLGMGDRCHIECRDGRLIEAEVVGFNRETLCLM  76
            + P ++ Y R  R++++   LL+A    + MG+ C I   +  L  AEVVG+N     L 
Sbjct  12   KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL--AEVVGINGSKALLS  68

Query  77   PIEHTSGLMPGSRVMPLAEQVKIPVGTSLLGRVLDGLGQPLDALGPLKNLQSVPLSNNTT  136
            P+  T+GL  G +VM+L  + ++PVG +LLGRV+DG+G+PLD+    ++L  V   +  +
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG----RELPEVCWKDYDA  124

Query  137  NP---LLRKPIREPLDVGIRAINALLPIGRGQRLGLFAGSGVGKSVLLGMMTRFTEADVV  193
             P   ++R+PI +PL  GIRAI+++   G GQR+G+F+++GVGKS LL+M+    +AD  
Sbjct  125  MPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN  184

Query  194  VVGLIGERGREVREFIEESLGEEGRERAVVIAAPADTTPLMRMRAMRLCHHVAAAFRDQG  253
            V+ LIGERGREVREFI+ +L+EE R R V++ A +D  +L R+RA+ +   +A  FRD+G
Sbjct  185  VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNG  244

Query  254  KQVLLLVDSLTRYAQAQREIALSLGEPPATKGYPPSAFAQLPSLVELAGNGQDPVGTLTA  313
            K+V+LL DSLTRYA+A REIAL+ GE + +  YPP+ F+ LP L+E +G G+   G++TA
Sbjct  245  KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITA  302

Query  314  FYTVLTEGDDQQDPIADAARAILDGHLVLSRKLAEQGHFPAIDISASVSRLATQVADQTQ  373
            FYTVL EGDD ++P+AD  R++LDGH+VLSR+LAE+GH+PAID+ A++SR+   V+ + +
Sbjct  303  FYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEH  362

Query  374  LSQGHHFRHLNSRYNEVRELLPLGGYQAGHDPQMDLAVRSYPMMAQFLQQNTEEKFDRQQ  433
               +  +R+  + Y+EV  L+ +G YQ G D + D A+ +YP +  FL+Q+ +E  + + 
Sbjct  363  RQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPEL  422

Query  434  SLEQLSDLV  442
             +E+L +++
Sbjct  423  LIEKLHQIL  431

753) S70_09815 in NC_017731


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  274 bits (1026),  Expect = 6e-75, Method: Compositional matrix adjust.
 Identities = 183/410 (45%), Positives = 285/410 (70%), Gaps = 13/410 (3%)

Query  17   LMEAPLQGVFIGEICVVERSITSKERIAKAQVVGFKEGLTVLSLIGRAQGLTRDMVIRPT  76
            L++A L GVF+GE+C     I + E +A  +VVG++ + ++LS +  + GL  +  + + 
Sbjct  32   LLNAWLPGVFMGELC----CIKPGEELA--EVVGINGSKALLSPFTSTAGLHCGQQVMAL  85

Query  77   GLPFVFEMHEQLAGKIFDAAGEQVGVLGHTAETAFCPDSRLMRIDSPPASVTSRRPIDEP  136
                   + E L G+++D+ G  ++  G+       P+      D+ P++   R+PI +P
Sbjct  86   RRRHQVPVGEALLGRVIDGFGRPLD--GREL-----PEVCWKDYDAMPPPAMVRQPITQP  138

Query  137  LITGIRAIDGLLTCGLGQRIGIFAAAGSGKTSLMNMIINHAKADIHVVALIGERGREVIE  196
            L+TGIRAID++ TCG GQR+GIF+A+G GK++L+ M+ N + AD +V+ LIGERGREV E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  197  FIEELQASPHAAQTVLIYATSDSPPIERCNAALLATTIAEYFRDRNRHVLLFVDSMTRYA  256
            FI+   +     + V++ ATSD P++ER  A ++ATTIAE+FRD  ++V+L+ DS+TRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  257  RALRDVALAAGELPARRGYPASVFEQLPMLLERPGRMQQGSITAFYTVLLESEEESDPIG  316
            RA R++ALAAGE +    YP++VF  LP LLER G  ++GSITAFYTVL+E+++ ++P++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  317  DEIRSILDGHIYLSHKLAGKGHYPAIDILHSISRVFQKVTTDTHRQAATKVRDRLSRLEQ  376
            DE+RS+LDGHI LS++LA +GHYPAID+L ++SRVF  VT++ HRQ A+ +R RL+  ++
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  377  IQLYLELGEYQRGESEDNDNALDKKEDIEQFLQQKMDEAEHFEIVLNRLD  426
            ++L + +GEYQRG   D D+A+D   DI  FL+Q  DE    E+++++L+
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

754) Mahau_0855 in NC_015520


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  274 bits (1025),  Expect = 7e-75, Method: Compositional matrix adjust.
 Identities = 187/359 (53%), Positives = 267/359 (75%), Gaps = 6/359 (1%)

Query  36   PGVEIGRLCKILSQDGSISAIAEVVGFREERMLLMPLGNVKGIGPGSTVIAMNTSLTVPA  95
            PGV +G LC I + +     +AEVVG+   + LL P+ +  G+  G  V+A+     VP 
Sbjct  38   PGVFMGELCCIKPGE----ELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPV  93

Query  96   gpgllgrvldglgrpMDSAGPLAADMYYDVEKDPPDPLTRQRICEPIVLGIKAIDGLLTC  155
            G +LLGRV+DG+GRP+D+   L+     D +  PP ++ RQ I +P++ GI+AID++ TC
Sbjct  94   GEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATC  152

Query  156  GYGQRMGVFAGSGVGKSTLMGMMARYASADVNVIALIGERGREVKEFIEKDLGEGL-ARS  214
            G GQR+G+F+++GVGKSTL++M+   + AD NV+ LIGERGREV+EFI+  L+E    R 
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  215  VLVVATSDQPPLIRTKAAFVATAIAEYFRDQGCNVLLMMDSLTRFAMAQREVGLAIGEPP  274
            V+VVATSD+P+L R +A FVAT+IAE+FRD+G  V+L+ DSLTR+A A RE++LA GE +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  275  VSRGYTPSVFATMPRLLERAGTSDKGSITGIYTVLVDGDDFNEPVTDNARSILDGHIVLS  334
            VS  Y P+VF+++PRLLER+G ++KGSIT++YTVLV+GDD NEP++D+ RS+LDGHIVLS
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLS  332

Query  335  RELANRNHYPPIDILASVSRVMPDVVTDRHMMLASQIKKIMAVYKGAEDLINIGAYVRG  393
            R LA+R HYP+ID+LA++SRV P V ++ H  LA+ +++ +A+Y+  E LI IG Y RG
Sbjct  333  RRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRG  391

755) Sulba_2308 in NC_018002


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  274 bits (1026),  Expect = 7e-75, Method: Compositional matrix adjust.
 Identities = 182/436 (42%), Positives = 290/436 (67%), Gaps = 13/436 (2%)

Query  3    LSRLKTKLQAKSLSPMFGTITKISSTTIEACGLRPSI--GDIVNLVSLDSPKSELGMVTE  60
            + RL+ K  +       G I  +S+T ++A    P++  G++  +     P  EL+ V  
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNA--WLPGVFMGELCCI----KPGEELAEVVG  59

Query  61   VDRNAFFISPFGFIEGFKIGDKVFISEQGMMIPVGEELLGRVVDPFIRPKDGKGTIGASS  120
            ++ +  ++SPF    G+  G++V    +   +PVGE LLGRV+D F RP DG+       
Sbjct  60   INGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCW  119

Query  121  QA-PIMKAPLDAMKRGLITEPFRVGVKTIDGLLTCGKGQKMGIFAGSGVGKSTLMGMIVR  179
            +    M +P  AM R  IT+P+  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  
Sbjct  120  KDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  180  GSEAPIKVVALIGERGREVPEFIEKNLGGNL-ENTVIIVATSDDSPLMRKYGAFSAMSVA  238
            +++A  +V+ LIGERGREV EFI+  L+ +     VI+VATSD ++L R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  239  EYFKNQGRDVLFMMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEG  298
            E+F+++G+ V+++ DS+TR+A A REI+LA GE + S  YPP+V+S LP+L+ER+G  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  299  KGSITAFFTVLVEGDDLSDPIADQSRSILDGHIVLSRELTDYGIYPPINIQNSASRVMGD  358
            KGSITAF+TVLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV   
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  359  VIDGDHKKAAMRFKRLNSILKENEVLIRIGAYEKGNDKELDLAIAKKEKMNGFLQQTPEE  418
            V   +H++ A  ++R  ++ +E E+LIRIG Y++G D + D AI     +  FL+Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

Query  419  VVAFDVTINELKQIIA  434
            V + ++ I+ L QI++
Sbjct  417  VCGPELLIEKLHQILT  432

756) fliI in NC_008570


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  274 bits (1025),  Expect = 8e-75, Method: Compositional matrix adjust.
 Identities = 189/382 (50%), Positives = 269/382 (71%), Gaps = 7/382 (1%)

Query  44   IGALCRIDTQDGSLEAEVVGFSGDRLFLMPSEQLKGVIPGARVVPITEEHGIPVGMNLLG  103
            +G LC I   +    AEVVG++G + +L P     G+  G +V+++   H +PVG  LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  104  RVIDGIGQPLDGLG-PILSSQTVQFAQHRINPLSRRPIHQPMDVGVRAINAVLTVGQGQR  162
            RVIDG+G+PLDG   P +  +  ++      ++ R+PI QP+  G+RAI++V T G+GQR
Sbjct  100  RVIDGFGRPLDGRELPEVCWK--DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  163  MGLFAGSGVGKSVLLGMMTRGSVADVVVVGLIGERGREVKEFIEEILGEEGrarsvvvaa  222
            +G+F+++GVGKS LL+M+  ++ AD  V+ LIGERGREV+EFI+  L+EE R R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  223  padaspLMRLKGCETALAIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGY  282
             +D ++L R+++   A +IAE+FRD+G  V+LL DSLTRYA+A REIALA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  283  PPSVFAKLPALVERAGNGSDGQGSITAFFTVLTEGDDLQDPIADAARAILDGHIVLSREL  342
            PP+VF+ LP L+ER+G G   +GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR L
Sbjct  278  PPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  343  ADAGHYPAIDIEKSISRVMPMVTSPEHMELARTLKQFYSLYQQNRDLITIGAYSQGSDPR  402
            A+ GHYPAID+  ++SRV P+VTS EH +LA  L++  +LYQ+   LI IG Y +G D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  403  IDRAIIQKPYLDQFLQQGMREV  424
             D+AI   P +  FL+Q+  EV
Sbjct  396  TDKAIDTYPDICTFLRQSKDEV  417

757) fliI in NC_021290


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  274 bits (1025),  Expect = 8e-75, Method: Compositional matrix adjust.
 Identities = 189/382 (50%), Positives = 269/382 (71%), Gaps = 7/382 (1%)

Query  44   IGALCRIDTQDGSLEAEVVGFSGDRLFLMPSEQLKGVIPGARVVPITEEHGIPVGMNLLG  103
            +G LC I   +    AEVVG++G + +L P     G+  G +V+++   H +PVG  LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  104  RVIDGIGQPLDGLG-PILSSQTVQFAQHRINPLSRRPIHQPMDVGVRAINAVLTVGQGQR  162
            RVIDG+G+PLDG   P +  +  ++      ++ R+PI QP+  G+RAI++V T G+GQR
Sbjct  100  RVIDGFGRPLDGRELPEVCWK--DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  163  MGLFAGSGVGKSVLLGMMTRGSVADVVVVGLIGERGREVKEFIEEILGEEGrarsvvvaa  222
            +G+F+++GVGKS LL+M+  ++ AD  V+ LIGERGREV+EFI+  L+EE R R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  223  padaspLMRLKGCETALAIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGY  282
             +D ++L R+++   A +IAE+FRD+G  V+LL DSLTRYA+A REIALA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  283  PPSVFAKLPALVERAGNGSDGQGSITAFFTVLTEGDDLQDPIADAARAILDGHIVLSREL  342
            PP+VF+ LP L+ER+G G   +GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR L
Sbjct  278  PPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  343  ADAGHYPAIDIEKSISRVMPMVTSPEHMELARTLKQFYSLYQQNRDLITIGAYSQGSDPR  402
            A+ GHYPAID+  ++SRV P+VTS EH +LA  L++  +LYQ+   LI IG Y +G D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  403  IDRAIIQKPYLDQFLQQGMREV  424
             D+AI   P +  FL+Q+  EV
Sbjct  396  TDKAIDTYPDICTFLRQSKDEV  417

758) fliI in NC_018604


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  274 bits (1026),  Expect = 8e-75, Method: Compositional matrix adjust.
 Identities = 182/412 (45%), Positives = 276/412 (67%), Gaps = 20/412 (4%)

Query  37   FC--GKVKEVIGSLVVS--EGPFAKLGDICRIYKNDDTYIDAEVIGFRNQDVLLSTYGSV  92
            +C  G++++V ++L+ +   G F  +G++C I   ++    AEV+G+     LLS + S 
Sbjct  19   YCRWGRIQDVSATLLNAWLPGVF--MGELCCIKPGEEL---AEVVGINGSKALLSPFTST  73

Query  93   NGITFGNMVYSFDKPLSIICSEKILGTVLNGMGKPLSGGG-----HKFYETPIPINHTSV  147
             G+  G+ V ++ +   +  +E +LG V++G G+PL G        K Y++  P      
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP------  127

Query  148  NPLNRPRIKKNIQTGVRAIDGLLTVGKGQRMAIMSGTGVGKSTLLSMIARNTNADVNVIA  207
             ++ R  I + + TG+RAID++ T G GQR++I S+ GVGKSTLL+M+    +AD NV+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  208  LIGERRREVLDFIERDLGEEGLKRSVVVVATSDDAPLLRVRAAYTATTIAEYFRDQGKDV  267
            LIGER REV +FI+  L+EE  KR V+VVATSD ++L RVRA + ATTIAE+FRD+GK V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  268  MFMVDSVTRFALAQREIGLSRGEPPTTRGYTPSVFSELAQLLERTGTSSKGTITAFYNVL  327
            +++ DS+TR+A A REI+L+ GE + +  Y P+VFS L++LLERTG + KG+ITAFY VL
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVL  307

Query  328  VEGDDLDEPITDAARGILDGHIVLSRDLANRGHFPAIDINKSISRIMNEVVSNMHKKAAR  387
            VEGDD++EP++D  R++LDGHIVLSR LA+RGH+PAID+  ++SR+   V S+ H++ A 
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  388  EFLKMSADYNEVKELIMIGGYAKGSMPEVDRAIEYKPLMDRYLQQDMYELSS  439
             + +  A Y+EV  LI IG Y +G   + D+AI+  P +  +L+Q   E+ +
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

759) STAUR_3041 in NC_014623


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  274 bits (1024),  Expect = 9e-75, Method: Compositional matrix adjust.
 Identities = 180/380 (48%), Positives = 271/380 (72%), Gaps = 6/380 (1%)

Query  21   RGRVTELTGLVIKASVPNVRVGEVVYIKSRVRGQVKAEVVGFQGDEVMLMPLGELYGIGP  80
            +GR+ ++++ +++A +P V +GE+  IK+   G+  AEVVG++G   +L P+    G+  
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKP---GEELAEVVGINGSKALLSPFTSTAGLHC  78

Query  81   DSEVIPSGKPLTIKCGEGLLGRVLGGTGEPIDGKPLPDDLIDWSV-DRDCPDPFTRMRIE  139
            + +V++  +   +  GE+LLGRV++G G P+DG+ LP+  + W   D   P +  R  I 
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE--VCWKDYDAMPPPAMVRQPIT  136

Query  140  HPLPLGVRCIDGLLTVGEGQRVGLFAGSGVGKSTLMGQIARNTKAELNVIALIGERGREV  199
            +PL  G+R ID++ T GEGQRVG+F+++GVGKSTL++ +     A+ NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  REFIEDALGEEGLRRSVLVCATSDQPSLVRLKAAYVATAIAEYFRERGGNVMFMLDTVTR  259
            REFI+ +L+EE  +R V+V ATSD+P+L R++A +VAT+IAE+FR+ G  V+++ D++TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  LARAQREIGLAVGEPPARQGYPPSVFSMLPRILERTGNSAKGKCTAIYTCLVAGGDMEEP  319
             ARA REI+LA GE +    YPP+VFS LPR+LERTG + KG  TA+YT LV G+DM+EP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  320  IADEVRGILDGHFILNRALGERNQWPAMDVLASLSRVMSGIVSKDHKKAAGKLRETLSTY  379
            +ADEVR++LDGH++L+R L+ER + PA+DVLA+LSRV + + S +H++ A+ LR  L+ Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  380  EKQRDLILLGAYQYGTDPRT  399
            +    LI +G YQ G D  T
Sbjct  377  QEVELLIRIGEYQRGVDTDT  396

760) Jden_2024 in NC_013174


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  273 bits (1022),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 170/343 (50%), Positives = 243/343 (71%), Gaps = 1/343 (0%)

Query  71   PLTAIPALRAGAQVRHTGGGIRVPVGSGLLGRVIDPLGEPIDGLGPLTHVDFVDVDAAAP  130
            P+T+ ++L+ G QV       +VPVG +LLGRVID +G P+DG   L +V   D DA +P
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPP  127

Query  131  HPLARQRVSEPLALGVRVMDTLTSVGRGQRMGLFAGSGVGKSTLLSMIARGTDAQVSVIA  190
             ++ RQ +++PL  G+R +D++++ G GQR+G+F+++GVGKSTLL+M+  + DA+ +V+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  191  LIGERGREVREFLEDDLGPEGLARSIVVIATSDQPALMRQRAAFTATRIAQWLAQMGNDV  250
            LIGERGREVREF++  L+ E   R ++V+ATSD+PAL R RA F AT IA+ + + G+ V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  251  VLMMDSLTRVAMAQREIGLSVGEPPATRGYPPSTFSVLANLLERAGSAEQGTVTGLYTVL  310
            VL+ DSLTR A A REI+L+ GE + +  YPP+ FS L+ LLER+G +E+G++T++YTVL
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVL  307

Query  311  VDGDDHNEPIADAARSILDGHVVLDRKLAVRGHYPAIDALASISRVASKVNDPANQAHAD  370
            V+GDD NEP+AD  RS+LDGH+VL R+LA RGHYPAID LA++SRV + V    ++  A 
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  371  TLRRFMAAKAGVQDLIDIGAYAAGSNPTVDAALAQAQDITSFL  413
             LRR +A    V+ LI IG Y  G +   D A+    DI +FL
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

761) TK90_1161 in NC_013889


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  273 bits (1022),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 189/431 (44%), Positives = 286/431 (67%), Gaps = 15/431 (3%)

Query  16   LTTGLLDRLQQSRGRLERVQPPQSEGRLSRLTGLTFEAEGLRLP---MGGRALIHGENGA  72
            +   L++RL     RL +  PP++  R +R+ +++      +LP   MG   L     G 
Sbjct  1    MKNELMQRL-----RL-KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMG--ELCCIKPGE  52

Query  73   AVPAEVVGFQNDRTFLMPEELASGLTPGARIEPLDIQREIPVGDALLGRVIDANGQPLDG  132
             + AEVVG++  +++L P   ++GL  G ++ +L  ++++PVG+ALLGRVID+ G+PLDG
Sbjct  53   EL-AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG  111

Query  133  KGPLRARDHSPLSGRPINPLQRAPVREPLDVGIRSINGLLSVGRGQRLGLFAGSGVGKSV  192
            +  L         + P  ++ R P+ +PL  GIR+I+++ + G GQR+G+F+++GVGKS 
Sbjct  112  RE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  193  LLGMMTRNTSADVIVVGLIGERGREVNEFIHEILDEESRQRTVVVAVPADQSPLLRQHGA  252
            LL+M+     AD  V+ LIGERGREV EFI+  L EE+R+R V+V   +D+++L R ++ 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  253  WVATTVAESFRDRGLNVLLLMDSLTRFAQGAREIAMAIGEPPASKGYAASVFARLPQLVE  312
             VATT+AE FRD G  V+LL DSLTR+A++AREIA+A GE + S  Y+++VF+ LP+L+E
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  313  RAGNGDVGGGSITAFYTVLAEGDDQNDPIVDAARAILDGHVVLSREIAETGRYPAIDVSA  372
            R+G G+   GSITAFYTVL EGDD N+P+ D  R++LDGH+VLSR +AE G+YPAIDV A
Sbjct  291  RTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLA  348

Query  373  SVSRVMSALITPEHEQAARRFRDLASTYMRNRDLIAVGAYRRGADTHLDEAVAMHERLEA  432
            ++SRV + + + EH Q A  +R   + Y     LI +G Y+RG DT+ D A+     + +
Sbjct  349  TLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  433  YLGQGRDEAVG  443
            +L Q++DE  G
Sbjct  409  FLRQSKDEVCG  419

762) fliI in NC_016745


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  273 bits (1021),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 190/381 (50%), Positives = 265/381 (70%), Gaps = 5/381 (1%)

Query  42   VGSQCKVQTQFGDMDAEVVGFADDKLYLMPSESLKGVIPGARVTPAGEGTGVPVGMALLG  101
            +G  C ++   G+  AEVVG+ + K  L P  S  G+  G +V +      VPVG ALLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  102  RVIDGIGQPLDGLGPIHTATTADFVSRPINPMARKPIEAPMDVGVRAINSVLTVGQGQRM  161
            RVIDG+G+PLDG   +      D+ + P  +M R+PI  P+  G+RAI+SV T G+GQR+
Sbjct  100  RVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  162  GLFAGSGVGKSVLLGMMTRGARADVVVVGLIGERGREVKEFIDVILGDEGraravvvaap  221
            G+F+++GVGKS LL+M+  ++ AD  V+ LIGERGREV+EFID  L++E R R V+V A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  222  adaSPLMRLKGCETALTLAEYYRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPASKGYP  281
            +D ++L R+++   A T+AE++RD+G  V+LL DSLTRYA+A REIALA GE + S  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  282  PSVFAKLPALVERAGNGGEGQGSITAFFTVLTEGDDLQDPIADAARAILDGHIVLSRQLA  341
            P+VF+ LP L+ER+G G   +GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR+LA
Sbjct  279  PGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  342  DSGHYPAIDIEKSISRVMTAVTTPEHQQQARVLKQAYALYQQNHDLINLGAYKSGADPRL  401
            + GHYPAID+  ++SRV   VT+ EH+Q A +L++  ALYQ+ + LI +G Y+ G D   
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  402  DMAITIRPRLDRFLTQTMTEV  422
            D AI   P +  FL Q+  EV
Sbjct  397  DKAIDTYPDICTFLRQSKDEV  417

763) C770_GR4pB208 in NC_019847


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  272 bits (1019),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 187/399 (47%), Positives = 274/399 (69%), Gaps = 10/399 (2%)

Query  20   QSGRVTNVSGLIVRAAIPAARIGELCELREPGKGRIGLADVVGIDGETAFLSLHGETRGI  79
            + GR+ +VS+ ++ A +P+  +GELC ++ PG     LA+VVGI+G  A+LS    T G+
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIK-PGEE---LAEVVGINGSKALLSPFTSTAGL  76

Query  80   SVRTEVVPTGCEPFIAAGDFLLGAIIDAHGDVVRKSPNSSADKSRASLPLY-GRPADPLS  138
                +V++      ++ G+ LLG +ID+ G      P  + + +      Y + P+ ++ 
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFG-----RPLDGRELPEVCWKDYDAMPPPAMV  131

Query  139  RRPVNRLFKSGIAAIDGFLTCGEGQRIGIFGPPGAGKSTLVSEIIANSEADVVVCALVGE  198
            R+P+ + + +GI AID+  TCGEGQR+GIF++PG GKSTL++ +   ++AD  V  L+GE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  199  RGREVGEFIADVMPEGAPSNVVLVIATSDRPALERFKAVLTATAVAEHFRDRGKRVLLVV  258
            RGREV EFI   ++E +    V+V+ATSDRPALER +A++ AT++AE FRD GKRV+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  259  DSVTRMARALREVGLAAGEPPVRRGFPPSVFSALPTIFERSGNNAAGTMTAFYTVLVEGE  318
            DS+TR ARA RE++LAAGE +V   +PP+VFSALP ++ER+G    G++TAFYTVLVEG+
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  319  EQEDPIAEETHSLLDGHIVLSDKMARAGRFPAIDVLASRSRTMNAVVSNAHRRAAEKVRS  378
            + ++P+A+E +SLLDGHIVLS ++A  G++PAIDVLA+ SR    V S+ HR+ A  +R 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  379  LLALYEEVELLIRVGEYCEGRDAAVDEAVSKRDRINQFL  417
             LALY+EVELLIR+GEY  G D+  D A+     I  FL
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

764) hrcN in NC_017390


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  272 bits (1019),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 210/413 (51%), Positives = 293/413 (71%), Gaps = 13/413 (3%)

Query  23   RYSPV---SRYGRVTGISGILIECILPGARIGDLCRIQRSDGGSVLSEIVGFSPEKILLS  79
            +Y+P     R GR+ ++S+ L++  LPG  +G+LC I+ ++    L+E+VG++  K LLS
Sbjct  12   KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLS  68

Query  80   ALGALDGISQGATIVPLYLPHSICVSEQLLGSVLDGFGRALEPGGRSAFAEPGSQVRAVP  139
            ++ +  G+  G  +++L   H + V+E LLG V+DGFGR+L+  GR        +  A+P
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCWKDYDAMP  126

Query  140  VLNDAPPPTERPRIATPLPTGLRAIDGLLTIGNGQRVGIFAGAGCGKTTLLAELARNTPC  199
                 PP+  R  I+ PL TG+RAID++ T G+GQRVGIF+++G GK+TLLA L      
Sbjct  127  -----PPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA  181

Query  200  DAIVFGLIGERGRELREFLDHELDEELRSRTVLLCATSDRSSMeraraaftataiaeafr  259
            D+ V+ LIGERGRE+REF+D  L EE R R V++ ATSDR+++ER RA F AT+IAE FR
Sbjct  182  DSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFR  241

Query  260  aeGKSVLLIVDSLTRFARAQREIglalgeppgrgglppSVYTLLPRLVERAGQTQQGAIT  319
             +GK V+L+ DSLTR+ARA REI+LA GE +  G  PP+V++ LPRL+ER+G  ++G+IT
Sbjct  242  DNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSIT  301

Query  320  ALYSVLIEQDSMNDPVADEVRSLIDGHIVLSRRLAERNHYPAIDVLASLSRTMSNVVEPH  379
            A+Y+VL+E D MN+P+ADEVRSL+DGHIVLSRRLAER HYPAIDVLA+LSR  + V   +
Sbjct  302  AFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHE  361

Query  380  HMMHAGRLRSLMAAYQQVEMLIRLGEYQPGNDSLTDAAVNANDIINQFLRQSM  432
            H   A+ LR  +A YQ+VE+LIR+GEYQ G D+ TD A+++   I  FLRQS 
Sbjct  362  HRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

765) hrcN in NC_012214


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  272 bits (1019),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 210/413 (51%), Positives = 293/413 (71%), Gaps = 13/413 (3%)

Query  23   RYSPV---SRYGRVTGISGILIECILPGARIGDLCRIQRSDGGSVLSEIVGFSPEKILLS  79
            +Y+P     R GR+ ++S+ L++  LPG  +G+LC I+ ++    L+E+VG++  K LLS
Sbjct  12   KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLS  68

Query  80   ALGALDGISQGATIVPLYLPHSICVSEQLLGSVLDGFGRALEPGGRSAFAEPGSQVRAVP  139
            ++ +  G+  G  +++L   H + V+E LLG V+DGFGR+L+  GR        +  A+P
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCWKDYDAMP  126

Query  140  VLNDAPPPTERPRIATPLPTGLRAIDGLLTIGNGQRVGIFAGAGCGKTTLLAELARNTPC  199
                 PP+  R  I+ PL TG+RAID++ T G+GQRVGIF+++G GK+TLLA L      
Sbjct  127  -----PPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA  181

Query  200  DAIVFGLIGERGRELREFLDHELDEELRSRTVLLCATSDRSSMeraraaftataiaeafr  259
            D+ V+ LIGERGRE+REF+D  L EE R R V++ ATSDR+++ER RA F AT+IAE FR
Sbjct  182  DSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFR  241

Query  260  aeGKSVLLIVDSLTRFARAQREIglalgeppgrgglppSVYTLLPRLVERAGQTQQGAIT  319
             +GK V+L+ DSLTR+ARA REI+LA GE +  G  PP+V++ LPRL+ER+G  ++G+IT
Sbjct  242  DNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSIT  301

Query  320  ALYSVLIEQDSMNDPVADEVRSLIDGHIVLSRRLAERNHYPAIDVLASLSRTMSNVVEPH  379
            A+Y+VL+E D MN+P+ADEVRSL+DGHIVLSRRLAER HYPAIDVLA+LSR  + V   +
Sbjct  302  AFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHE  361

Query  380  HMMHAGRLRSLMAAYQQVEMLIRLGEYQPGNDSLTDAAVNANDIINQFLRQSM  432
            H   A+ LR  +A YQ+VE+LIR+GEYQ G D+ TD A+++   I  FLRQS 
Sbjct  362  HRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

766) fliI in NC_009445


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  272 bits (1017),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 181/383 (48%), Positives = 264/383 (69%), Gaps = 7/383 (1%)

Query  55   AEVIGFSGKNAVVMPFAGLEGVRRGCRAVIANSANQVRPSPAWLGRVVNAMGEPIDGKGP  114
            AEV+G++G +A++ PF++  G++ G + +     +QV  + A LGRV+++ G P+DG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  115  LPSGAAPVPYRNNPPPAHSRKRVGAPLDLGVRALNTFLTCCRGQRLGIFAGSGVGKSVLL  174
            LP       Y   PPPA  R+ +  PL  G+RA+++  TC  GQR+GIF+++GVGKS LL
Sbjct  114  LPEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  175  SMLARNVDAAVSVIGLIGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYL  234
            +ML    DA  +V+ LIGERGREV+EF++  L+EE   R V+VVATSD PAL R +A ++
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  235  TLAISEYFRDEGKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERA  294
            + +I+E+FRD+GK V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  295  GPGSGEGTITGIFTVLVDGDDHNEPVADAVRGILDGHVVMQRSIAERGRYPAINILKSVS  354
            G G   G+IT+++TVLV+GDD NEP+AD VR++LDGH+V+ R +AERG+YPAI++L ++S
Sbjct  293  GMG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  355  RTMP--KSADPVFLPTIMRARQVMATYADMEELIRLGAYRAGSSPEVDEAIRLHEPLETF  412
            R  P   S +   L++I+R R  +A Y ++E LIR+G Y+ G   + D AI     + TF
Sbjct  352  RVFPVVTSHEHRQLAAILRRR--LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  413  LRQRKDEVCTLSQGYRELEQILG  435
            LRQ KDEVC        L+QIL 
Sbjct  410  LRQSKDEVCGPELLIEKLHQILT  432

767) fliI in NC_012225


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  272 bits (1018),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 274/409 (67%), Gaps = 18/409 (4%)

Query  33   YGKVKEVIGSLVIS--EGPFCKLGDMCRIYMNDNSYLDAEAIGFRNQDVLLATYGPVNGI  90
             G++++V ++L+ +   G F  +G++C I   ++    AE +G+     LL+ + +  G+
Sbjct  22   WGRIQDVSATLLNAWLPGVF--MGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  91   TFGNMVYSFERPLSVMCCDEILGTVLDARGKPLAGGG-----HNFYETPIPVSHSAVNPM  145
              G+ V ++ R   V   + +LG V+D+ G+PL G        + Y++  P       +M
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP------PAM  130

Query  146  NRPRINKHIQTGVRAIDGLLTVGQGQRMAIMSGTGVGKSTLLSMIARNTNADVNVIALIG  205
             R  I + + TG+RAID++ T G+GQR++I S+ GVGKSTLL+M+    +AD NV+ LIG
Sbjct  131  VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG  190

Query  206  ERRREVRDFIERDLGEEGLKRSILVVATSDDAPLLRVRAAYTATTIAEYFRDKGKNVMFM  265
            ER REVR+FI+  L+EE  KR ++VVATSD ++L RVRA + ATTIAE+FRD+GK V+++
Sbjct  191  ERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLL  250

Query  266  VDSVTRFALAQREIGLSRGEPPTTRGYTPSVFSELAKLLERTGTSSKGSITAFYNVLVEG  325
             DS+TR+A A REI+L+ GE + +  Y P+VFS L++LLERTG + KGSITAFY VLVEG
Sbjct  251  ADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEG  310

Query  326  DDLDEPITDAVRGILDGHIVLSRDLANRGHFPAIDVNKSISRIMNEVVSNMHKRAAREFL  385
            DD++EP++D VR++LDGHIVLSR LA+RGH+PAIDV  ++SR+   V S+ H++ A  + 
Sbjct  311  DDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILR  370

Query  386  KMSADYNEAKELIMIGGYAKGSMPEVDRAIDYKPMMDRYLQQDVYEVSS  434
            +  A Y+E   LI IG Y +G   + D+AID  P +  +L+Q   EV +
Sbjct  371  RRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

768) PSPPH_2530 in NC_005773


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  272 bits (1016),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 216/418 (52%), Positives = 298/418 (72%), Gaps = 7/418 (1%)

Query  25   RGTLRSIRGVLLRASVAGVGIGELCVLRDPGNGRELSAEVIGFDEDDAILSPIGSMEGLS  84
            +G ++ + + LL A ++GV +GELC ++ PG+  EL AEV+G++   A+LSP+ S  GL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIK-PGE--EL-AEVVGINGSKALLSPFTSTAGLH  77

Query  85   TRTQIIATGQALGVQVGDALLGRVISPMGEFLDGPAPTATLGMQHYPLHAEPPAPFSRQR  144
               Q++A  +   V VG+ALLGRVI   G  LDG    + +  ++Y  +A PP++  RQ 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDY--DAMPPPAMVRQP  134

Query  145  IVKPLSLGIRAIDSLLTLGQGQRMGIFGEPGVGKSSLLASIVRNSDADVIVIgligergr  204
            I +PL  GIRAIDS+ T G+GQR+GIF+ PGVGKS+LLA +   +DAD  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  205  evrellegqlDatarartvavvatSDRPAAERVRAAYVATTLAEYHRDQGRNVLLLMDSL  264
            EVRE+++  L   +R R V VVATSDRPA ERVRA +VATT+AE+ RD+G+ V+LL DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  265  TRFARAQREIGLAVGEPPPRRGYPPSFFSALPRLLERAGPGPQGSITALYTVLTEGDAAM  324
            TR+ARA REI+LA GE +    YPP+ FSALPRLLER+G G +GSITA+YTVL EGD   
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  325  DPVAEETRSILDGHIVLSAELAQRDHFPAIDVLRSRSRLMDHIATAEHRHLASRLRELIA  384
            +P+A+E RS+LDGHIVLS  LA+R+H+PAIDVL + SR+   +++ EHR+LA+ LR  +A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  385  RRQEIELLIQVGEYAAGSDPIADEAIARHSPIEAFLRQPPSEHDSLAQTLARLRKVLA  442
              QE+ELLI++GEY  G D  +D AI   + I +FLRQ+  E  +    + +L+++L+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

769) B565_1102 in NC_015424


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  272 bits (1016),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 189/382 (50%), Positives = 268/382 (71%), Gaps = 7/382 (1%)

Query  44   IGALCRIDTLDGTLEAEVVGFSGDRLYLMPSEQLKGVIPGARVVPITEEHGIPVGMNLLG  103
            +G LC I   +    AEVVG++G +  L P     G+  G +V+++   H +PVG  LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  104  RVIDGIGQPLDGLG-PILSSQTVQFAQHRINPLSRRPIHQPMDVGVRAINAVLTVGQGQR  162
            RVIDG+G+PLDG   P +  +  ++      ++ R+PI QP+  G+RAI++V T G+GQR
Sbjct  100  RVIDGFGRPLDGRELPEVCWK--DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  163  MGLFAGSGVGKSVLLGMMTRGSVADVVVVGLIGERGREVKEFIEDILGEEGrarsvvvaa  222
            +G+F+++GVGKS LL+M+  ++ AD  V+ LIGERGREV+EFI+  L+EE R R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  223  padaspLMRLKGCETALAIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGY  282
             +D ++L R+++   A +IAE+FRD+G  V+LL DSLTRYA+A REIALA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  283  PPSVFAKLPALVERAGNGSDGQGSITAFFTVLTEGDDLQDPIADAARAILDGHIVLSREL  342
            PP+VF+ LP L+ER+G G   +GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR L
Sbjct  278  PPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  343  ADAGHYPAIDIEKSISRVMPMVTSPEHMDLARTLKQFYSLYQQNRDLITIGAYSQGSDPR  402
            A+ GHYPAID+  ++SRV P+VTS EH +LA  L++  +LYQ+   LI IG Y +G D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  403  IDRAIIQKPYLDQFLQQGMREV  424
             D+AI   P +  FL+Q+  EV
Sbjct  396  TDKAIDTYPDICTFLRQSKDEV  417

770) fliI in NC_004917


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  272 bits (1017),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 165/370 (45%), Positives = 263/370 (72%), Gaps = 3/370 (0%)

Query  72   MQTHNLGMVMAIEGEHFFISPFSFIEGHKCGDKVEILNHGLHIPVGENMLGRVINPLGEP  131
               ++L+ V++I+G   ++SPF+   G  CG++V  L +  ++PVGE +LGRVI+ +G P
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRP  108

Query  132  IDDKGALHTSHTTLLMRPPISALKRGLINEVFEVGVKSIDGILTCGKGQKMGIFAGSGVG  191
            +D++   +         PP +A+ R  I + +  G+++ID++ TCG GQ++GIF+++GVG
Sbjct  109  LDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  192  KSTLMGMIVRGSNAPIKVIALIGERGREVPEFIHKNLNNDLTN-TILVVATSDDSPLMRK  250
            KSTL++M+  +++A  +V+ LIGERGREV EFI+  L+++  +  ++VVATSD ++L R 
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  251  YGAFSAMAIAEYFKSLGNDVLFIMDSITRFAMAQREIGLALGEPPTSKGYPPSVLTLLPQ  310
             + F A +IAE+F+  G+ V+++ DS+TR+A A REI+LA GE + S  YPP+V++ LP+
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  311  LMERAGKEDGVGSITAFFTVLVEGDDLSDPVADQSRSILDGHIVLNRDLTDMGIYPPINI  370
            L+ER+G  +  GSITAF+TVLVEGDD+++P+AD+ RS+LDGHIVL+R L++ G YP+I++
Sbjct  288  LLERTGMGEK-GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDV  346

Query  371  LNSASRVINDIISPEHLQVIRKFRRLYSLLKENEVLIRIGAYQRGADKELDEAITKRSLM  430
            L + SRV+  + S EH Q+   +RR  +L +E E+LIRIG YQRG D + D AI   + +
Sbjct  347  LATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDI  406

Query  431  ESFLKQEMNE  440
             +FL+Q  +E
Sbjct  407  CTFLRQSKDE  416

771) hrcN in NC_017445


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  272 bits (1016),  Expect = 5e-74, Method: Compositional matrix adjust.
 Identities = 209/416 (51%), Positives = 293/416 (71%), Gaps = 19/416 (4%)

Query  23   RYAPV---SRYGRVTGISGILIECILPGARIGDLCRIQRSDGGSVLSEIVGFSPEKILLS  79
            +Y+P     R GR+ ++S+ L++  LPG  +G+LC I+ ++    L+E+VG++  K LLS
Sbjct  12   KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLS  68

Query  80   ALGALDGISQGATIVPLYLPHSICVSEQLLGSVLDGFGRALEPGGHSAFAEPGSQVRAV-  138
            ++ +  G+  G  +++L   H + V+E LLG V+DGFGR+L+          G ++  V 
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD----------GRELPEVC  118

Query  139  -PVLNDAPPPT-ERPRIATPLPTGLRAIDGLLTIGNGQRVGIFAGAGCGKTTLLAELARN  196
                +  PPP+  R  I+ PL TG+RAID++ T G+GQRVGIF+++G GK+TLLA L   
Sbjct  119  WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNA  178

Query  197  TPCDAIVFGLIGERGRELREFLDHELDEELRSRTVLLCATSDRSSMeraraaftataiae  256
               D+ V+ LIGERGRE+REF+D  L EE R R V++ ATSDR+++ER RA F AT+IAE
Sbjct  179  PDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE  238

Query  257  afraeGKSVLLIVDSLTRFARAQREIglalgeppgrgglppSVYTLLPRLVERAGQTQQG  316
             FR +GK V+L+ DSLTR+ARA REI+LA GE +  G  PP+V++ LPRL+ER+G  ++G
Sbjct  239  FFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKG  298

Query  317  AITALYSVLIEQDSMNDPVADEVRSLIDGHIVLSRRLAERNHYPAIDVLASLSRTMSNVV  376
            +ITA+Y+VL+E D MN+P+ADEVRSL+DGHIVLSRRLAER HYPAIDVLA+LSR  + V 
Sbjct  299  SITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVT  358

Query  377  EPHHMMHAGRLRSLMAAYQQVEMLIRLGEYQPGNDSLTDAAVNANDIINQFLRQSM  432
              +H   A+ LR  +A YQ+VE+LIR+GEYQ G D+ TD A+++   I  FLRQS 
Sbjct  359  SHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

772) fliI in NC_018692


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1015),  Expect = 5e-74, Method: Compositional matrix adjust.
 Identities = 183/370 (50%), Positives = 266/370 (72%), Gaps = 3/370 (0%)

Query  55   GEIEAEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLD  114
            GE  AEVVG+ +  + L P  +  G+  G +VM+L R+  +PVG +LLGRV+DG G+PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  115  GLGEINAEARAPTTRPPMNPLIRRPINTPMDVGVRAINALNTVGVGQRMGLFAGSGVGKS  174
            G  E+    +      P  +++R+PI  P+  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  G-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  175  VLLGMMTRGCEADvvvvglvgergrevKEFIHEILTEEERQRAVVVAAPADTSPLMRLKG  234
             LL+M+  + +AD  V+ L+GERGREV+EFI+  L+EE R+R V+V A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  235  CETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
               A TIAE+FRD+G +V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  295  ERAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRALADSGHYPAIDIE  354
            ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR LA+ GHYPAID+ 
Sbjct  290  ERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  ASISRVMPMVVSDEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAIN  414
            A++SRV P+V S+EH+ +A  +R+  + Y++ + LI IG Y +G D   D AI + P I 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  AFLQQGMKQV  424
            +FL+Q+  +V
Sbjct  408  TFLRQSKDEV  417

773) Dvul_2671 in NC_008751


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1015),  Expect = 5e-74, Method: Compositional matrix adjust.
 Identities = 182/381 (48%), Positives = 263/381 (70%), Gaps = 7/381 (1%)

Query  41   LGAVCHMLPDDGGESVAAEVVGFRDGRLLFMPYGELRGVRPGSLIRNSSLPPVFPVGEGL  100
            +G +C + P++      AEVVG+ +++ L+ P+    G++ G  +         PVGE+L
Sbjct  42   MGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  101  LGRAFDAFGAPLDGGTPVMPEA-WAPLYASPPNPLTRPRIDTPLDVGVRCINSLLTLGRG  159
            LGR +D+FG PLDG    +PE  W    A PP ++ R  I  PL  G+R I+S+ T G G
Sbjct  98   LGRVIDGFGRPLDG--RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  160  QRVGIMAGSGVGKSTLMGMMARYTEAQVNVIGLIGERGREVVEFMEKDLGPEGMARSVLV  219
            QRVGI +++GVGKSTL++M+    +A+ NV+ LIGERGREV EF++  L+ E   R V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  220  VATSDQSPLVRMRaayaatavaEFFRDQGKDVLLMMDSVTRFAMAAREVGLAVGEPPTTK  279
            VATSD+++L R+RA + AT++AEFFRD+GK V+L+ DS+TR+A AARE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  280  GYTPTVFAQLPRLLERAGRSPEGTITGIYTVLVDGDDFNEPIADAVRSILDGHIVLTREL  339
             Y P VF+ LPRLLER+G +  G+IT++YTVLV+GDD NEP+AD VRS+LDGHIVL+R L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  340  ADQGHFPAIDVLKSISRLRTDICPDDIVNAGRILTRHMATFRRVEDMINIGAYATGSNPD  399
            A++GH+PAIDVL ++SR+   + +++  + + IL R++A ++ VE +I IG Y  G + D
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  400  IDKAIAMVGPINDFLRQHITD  420
             DKAI     I  FLRQ   +
Sbjct  396  TDKAIDTYPDICTFLRQSKDE  416

774) fliI in NC_002937


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1015),  Expect = 5e-74, Method: Compositional matrix adjust.
 Identities = 182/381 (48%), Positives = 263/381 (70%), Gaps = 7/381 (1%)

Query  41   LGAVCHMLPDDGGESVAAEVVGFRDGRLLFMPYGELRGVRPGSLIRNSSLPPVFPVGEGL  100
            +G +C + P++      AEVVG+ +++ L+ P+    G++ G  +         PVGE+L
Sbjct  42   MGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  101  LGRAFDAFGAPLDGGTPVMPEA-WAPLYASPPNPLTRPRIDTPLDVGVRCINSLLTLGRG  159
            LGR +D+FG PLDG    +PE  W    A PP ++ R  I  PL  G+R I+S+ T G G
Sbjct  98   LGRVIDGFGRPLDG--RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  160  QRVGIMAGSGVGKSTLMGMMARYTEAQVNVIGLIGERGREVVEFMEKDLGPEGMARSVLV  219
            QRVGI +++GVGKSTL++M+    +A+ NV+ LIGERGREV EF++  L+ E   R V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  220  VATSDQSPLVRMRaayaatavaEFFRDQGKDVLLMMDSVTRFAMAAREVGLAVGEPPTTK  279
            VATSD+++L R+RA + AT++AEFFRD+GK V+L+ DS+TR+A AARE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  280  GYTPTVFAQLPRLLERAGRSPEGTITGIYTVLVDGDDFNEPIADAVRSILDGHIVLTREL  339
             Y P VF+ LPRLLER+G +  G+IT++YTVLV+GDD NEP+AD VRS+LDGHIVL+R L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  340  ADQGHFPAIDVLKSISRLRTDICPDDIVNAGRILTRHMATFRRVEDMINIGAYATGSNPD  399
            A++GH+PAIDVL ++SR+   + +++  + + IL R++A ++ VE +I IG Y  G + D
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  400  IDKAIAMVGPINDFLRQHITD  420
             DKAI     I  FLRQ   +
Sbjct  396  TDKAIDTYPDICTFLRQSKDE  416

775) Deval_0281 in NC_017310


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1015),  Expect = 5e-74, Method: Compositional matrix adjust.
 Identities = 182/381 (48%), Positives = 263/381 (70%), Gaps = 7/381 (1%)

Query  41   LGAVCHMLPDDGGESVAAEVVGFRDGRLLFMPYGELRGVRPGSLIRNSSLPPVFPVGEGL  100
            +G +C + P++      AEVVG+ +++ L+ P+    G++ G  +         PVGE+L
Sbjct  42   MGELCCIKPGEE----LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  101  LGRAFDAFGAPLDGGTPVMPEA-WAPLYASPPNPLTRPRIDTPLDVGVRCINSLLTLGRG  159
            LGR +D+FG PLDG    +PE  W    A PP ++ R  I  PL  G+R I+S+ T G G
Sbjct  98   LGRVIDGFGRPLDG--RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  160  QRVGIMAGSGVGKSTLMGMMARYTEAQVNVIGLIGERGREVVEFMEKDLGPEGMARSVLV  219
            QRVGI +++GVGKSTL++M+    +A+ NV+ LIGERGREV EF++  L+ E   R V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  220  VATSDQSPLVRMRaayaatavaEFFRDQGKDVLLMMDSVTRFAMAAREVGLAVGEPPTTK  279
            VATSD+++L R+RA + AT++AEFFRD+GK V+L+ DS+TR+A AARE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  280  GYTPTVFAQLPRLLERAGRSPEGTITGIYTVLVDGDDFNEPIADAVRSILDGHIVLTREL  339
             Y P VF+ LPRLLER+G +  G+IT++YTVLV+GDD NEP+AD VRS+LDGHIVL+R L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  340  ADQGHFPAIDVLKSISRLRTDICPDDIVNAGRILTRHMATFRRVEDMINIGAYATGSNPD  399
            A++GH+PAIDVL ++SR+   + +++  + + IL R++A ++ VE +I IG Y  G + D
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  400  IDKAIAMVGPINDFLRQHITD  420
             DKAI     I  FLRQ   +
Sbjct  396  TDKAIDTYPDICTFLRQSKDE  416

776) Glaag_1284 in NC_015497


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1014),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 188/383 (50%), Positives = 269/383 (71%), Gaps = 9/383 (2%)

Query  44   VGSQCLIQTVDGEIEAEVVGFAEHITYLMPTQAVKGIVPGSRVQPLNREQGLPVGMSLLG  103
            +G  C I+   GE  AEVVG+    + L P  +  G+  G +V +L R + +PVG +LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  104  RVVDGNGQPLDG--LGAIKAEKRVPLTRPPMNPLSRKPIREPLDVGVRAINSMITVGSGQ  161
            RV+DG G+PLDG  L  +      ++  P+M    R+PI +PL  G+RAI+S+ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPPAM---VRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  162  RMGLFAGSGVGKSVLLGMMTRGTSADvvvvglvgergrevKEFIQDILGDEERQKAVVVA  221
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L++E R++ V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  222  APADTSPLMRLKGCETAVTIAEYFRDKGMNVLLLVDSLTRYAMAQREIALAVGEPPATKG  281
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTRYA A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  282  YPPSVFARLPALVERAGNGGENQGSITAFYTVLTEGDDLQDPIADSARAILDGHIVLSRQ  341
            YPP+VF+ LP L+ER+G G  ++GSITAFYTVL EGDD+++P+AD  R++LDGHIVLSR+
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  342  LADSGHYPAIDIEASISRVMPMVVSPEHVQVARRIRQVYSTYQQNRDLISIGAYTRGNDP  401
            LA+ GHYPAID+ A++SRV P+V S EH Q+A  +R+  + YQ+   LI IG Y RG D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  402  RIDLSIKAEPAINAFLQQGMQQI  424
              D +I + P I +FL+Q+ +++
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEV  417

777) fliI in NC_008228


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1014),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 188/383 (50%), Positives = 269/383 (71%), Gaps = 9/383 (2%)

Query  44   VGSQCLIQTVDGEIEAEVVGFAEHITYLMPTQAVKGIVPGSRVQPLNREQGLPVGMSLLG  103
            +G  C I+   GE  AEVVG+    + L P  +  G+  G +V +L R + +PVG +LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  104  RVVDGNGQPLDG--LGAIKAEKRVPLTRPPMNPLSRKPIREPLDVGVRAINSMITVGSGQ  161
            RV+DG G+PLDG  L  +      ++  P+M    R+PI +PL  G+RAI+S+ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPPAM---VRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  162  RMGLFAGSGVGKSVLLGMMTRGTSADvvvvglvgergrevKEFIQDILGDEERQKSVVVA  221
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L++E R++ V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  222  APADTSPLMRLKGCETAVTIAEYFRDKGMNVLLLVDSLTRYAMAQREIALAVGEPPATKG  281
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTRYA A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  282  YPPSVFARLPALVERAGNGGEHQGSITAFYTVLTEGDDLQDPIADSARAILDGHIVLSRQ  341
            YPP+VF+ LP L+ER+G G  ++GSITAFYTVL EGDD+++P+AD  R++LDGHIVLSR+
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  342  LADSGHYPAIDIEASISRVMPMVVSPEHVQVARRIRQVYSTYQQNRDLISIGAYTRGNDP  401
            LA+ GHYPAID+ A++SRV P+V S EH Q+A  +R+  + YQ+   LI IG Y RG D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  402  RIDLSIKAEPAINAFLQQGMQQI  424
              D +I + P I +FL+Q+ +++
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEV  417

778) S58_17270 in NC_020453


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1014),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 180/383 (47%), Positives = 267/383 (70%), Gaps = 7/383 (1%)

Query  54   AEVIGFSGKNAVVMPFAGLEGVRRGCRAVIANAANQVRPSQAWLGRVINAMGEPIDGKGP  113
            AEV+G++G +A++ PF++  G++ G + +     +QV  ++A LGRVI++ G P+DG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  114  LPQGASPVPYRNNPPPAHSRRRVGSPLDLGVRALNTFLTCCRGQRLGIFAGSGVGKSVLL  173
            LP+      Y   PPPA  R+ +  PL  G+RA+++  TC  GQR+GIF+++GVGKS LL
Sbjct  114  LPEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  174  SMLARNVDAAVSVIGLIGERGREVQEFLQDDLGDEGLARSVVVVATSDEPALMRRQAAYL  233
            +ML    DA  +V+ LIGERGREV+EF++  L++E   R V+VVATSD PAL R +A ++
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  234  TLAISEYFRDEGKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERA  293
            + +I+E+FRD+GK V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  294  GPGSGDGTITGIFTVLVDGDDHNEPVADAVRGILDGHVVMQRSIAERGRYPAINVLKSVS  353
            G G   G+IT+++TVLV+GDD NEP+AD VR++LDGH+V+ R +AERG+YPAI+VL ++S
Sbjct  293  GMG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  354  RTMP--KSADPVFLPTIMRARQVMATYADMEELIRLGAYRAGSSPEVDEAIRLHEPLEAF  411
            R  P   S +   L++I+R R  +A Y ++E LIR+G Y+ G   + D AI     + +F
Sbjct  352  RVFPVVTSHEHRQLAAILRRR--LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  412  LRQRKDEVSSLHDGYRELEQILG  434
            LRQ KDEV + +     L+QIL 
Sbjct  410  LRQSKDEVCGPELLIEKLHQILT  432

779) Vapar_2274 in NC_012791


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1013),  Expect = 7e-74, Method: Compositional matrix adjust.
 Identities = 194/389 (50%), Positives = 277/389 (72%), Gaps = 11/389 (2%)

Query  65   LAEVVGLKPGRVTLMPYGPVEGIAAGCEVHALGADSQIGVGPAMLGRVIDGFGEPLDGLP  124
            LAEVVG++ ++  L P+ +  G+  G +V AL    Q+ VG A+LGRVIDGFG PLDG  
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE  113

Query  125  KPVAIQRRPLKAAPINPMQRPPIRRILETGVRAIDGLLTLGQGQRIGIFAGSGVGKSTLL  184
             P  + ++   A P  +M R PI + L TG+RAID++ T G+GQR+GIF+++GVGKSTLL
Sbjct  114  LP-EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  185  GLLARHVKAQGGADGSGGINVIALIGERGREVREFIEKQLGPEGLARSVVVVATSDQPal  244
            ++L     A++        NV+ LIGERGREVREFI+  L+ E   R V+VVATSD+PAL
Sbjct  173  AMLCNAPDADS--------NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  245  arlraayaalSIAEYFRDEGRNVLLTMDSITRFAMARREVGLSAGEPPTARGYTPSVFAE  304
             R+RA + A +IAE+FRD+G+ V+L  DS+TR+A A RE++L+AGE + +  Y P+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  305  LPELCERCGMAPGGGSITALLTVLVEGDDLNEPVSDALRAILDGHIVLSRQLAHRGHYPA  364
            LP L ER GM+   GSITA+ TVLVEGDD+NEP++D +R++LDGHIVLSR+LA+RGHYPA
Sbjct  285  LPRLLERTGMG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  365  IDVLKSVSRLMPELADEAQRSLAVAAMQHLAVLERNRQMIDIGAYEKGANAELDRAIDTE  424
            IDVL ++SR+ P ++ + +R LA    ++LA+ +    +I IG Y++G +++ D+AIDT 
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  425  PGLQAWLRQSVGGV-GRMEAIHDLRAILA  452
            P++ + LRQS + V G    I+ L+ IL+
Sbjct  404  PDICTFLRQSKDEVCGPELLIEKLHQILT  432

780) fliI in NC_010995


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1013),  Expect = 7e-74, Method: Compositional matrix adjust.
 Identities = 170/362 (47%), Positives = 264/362 (73%), Gaps = 3/362 (0%)

Query  77   AEVVGFAGDKVFLMPVKRVEGLQPGARVIPVAGQMGMRIGPQLLGRVINGIGQPLDAKGP  136
            AEVVG+ G K +L P     GL+ G +V+++  +  + +G  LLGRVI+G+G+PLD++  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  137  LAGDEYLDFNPRDINPLQRHPISETLDVGVRAINALITVGRGQRLGLFAGSGVGKSVLMG  196
            L+     D+++    ++ R+PI++ L  G+RAI+++ T G GQR+G+F+++GVGKS L++
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  197  MMTKFTTADIVVVGLIGERGREVKEFIDHILGEEGLRRavvvaspaddapLMrlraslla  256
            M+ +   AD  V+ LIGERGREV+EFID  L+EE  +R V+V + +D ++L R+RA ++A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  257  srIAEYYRDQGQNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKIPQLVERAG  316
            + IAE++RD+G+ V+LL DSLTR+A+A REIALA GE + +  YPP+VF+ +P+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  317  NAAEGEGSITAFYTVLTEGDDLQDPIADSARAILDGHVVLSRRLAEEGVYPAIDVESSIS  376
             +    GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSRRLAE G YPAIDV +++S
Sbjct  294  MGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  377  RAMQNIVDDEHLKMMQRFKQLLARYQQNRDLIAIGAYTQGADPETDAAIERFPHLRAFIQ  436
            R    +  +EH ++   +++ LA YQ+   LI IG Y +G D +TD AI+ +P++ +F++
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  437  QG  438
            Q+
Sbjct  412  QS  413

781) fliI in NC_011312


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1012),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 170/371 (46%), Positives = 258/371 (70%), Gaps = 7/371 (1%)

Query  54   GEIEAEVVGFSGDNLFLMPNEQISGVLPGAKVTPIADVSGIPVGMELLGRVIDGVGKPID  113
            GE  AEVVG++G + +L P    +G+  G +V ++     +PVG  LLGRVIDG G+P+D
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  114  G--LGDIYTEQTASFTSTPINPLSRKPIREPLDVGLKAINGLLTVGKGQRIGLFAGSGVG  171
            G  L ++   +   + + P  ++ R+PI +PL  G++AI+++ T G GQR+G+F+++GVG
Sbjct  111  GRELPEVCWKD---YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  172  KSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEDILGTEGRQRSVVVAAPADSSPLMRL  231
            KS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+ E R+R V+V A +D ++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  232  KGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPA  291
            ++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  292  LVERAGNGNEDQGSITAFFTVLTEGDDLQDPIADAARAILDGHIVLSREMADAGHYPAID  351
            L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR +A+ GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  352  VERSVSRVMPQITDEEHMLMSKAVRQVLATCRKNQDLVSIGAYKPGTNPAIDQAFTLKPR  411
            V  ++SRV P +T +EH  ++  +R+ LA  +  + L+ IG Y+ G +   D+A+   P 
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  412  LDEYLQQRMKE  422
            +  +L+Q   E
Sbjct  406  ICTFLRQSKDE  416

782) EUS_27210 in NC_021011


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1012),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 183/406 (46%), Positives = 277/406 (69%), Gaps = 9/406 (2%)

Query  12   TTDTYKYLGKIEKIVGMTIEASGPLCSIGDVCRIYTKDMKSHIPAEVVGFNEHKVLLMPY  71
              D Y   G+I+ + +  ++A  P   +G++C I      ++  AEVVG+N  K LL P+
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEELAEVVGINGSKALLSPF  70

Query  72   TDLEGIGPGSIVDNTGDKLNVRVGDKLIGRIIDALGNPLDDGE--PIEYTDTVPIAGIPV  129
            T   G+  G  V     + +V VG+ L+GR+ID++G PLD+ E   +   D     ++P 
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD---YDAMPP  127

Query  130  NPLTRPKIHEPIELGVKAIDGLLTMGKGQRMGIFAGSGVGKSTLMGMIARKVKADLNVIA  189
             ++ R  I +P+  G++AID++ T G GQR+GIF+++GVGKSTL++M+     AD NV+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  190  LVGERGREVREFIENDLGEEGMARSVVVVATSDQPAMMRNKCPMTATAIAEYFCSQGKDV  249
            L+GERGREVREFI+  L+EE   R V+VVATSD+PA+ R +    AT+IAE+F  +GK V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  250  LLMMDNLTRFAMAQREIGLSTGEPPVARGYTPSIYAAMPKLLERAGNFEKGSITGIYAVL  309
            +L+ D+LTR+A A REI+L++GE +V+  Y P++++A+P+LLER+G  EKGSIT++Y+VL
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVL  307

Query  310  VEGDDTNEPISDTVRGIIDGHIVLSRKIAAQNHYPAIDILPSISRLMSAIADPEHNKAAG  369
            VEGDD NEP++D VR+++DGHIVLSR++A + HYPAID+L+++SR+ + ++  EH + A+
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  370  KlrnllalynnnadlISIGAYKKGTNPALDEAIKKIDKINDFLMQG  415
             LR  LALY++   LI IG Y++G +   D AI     I  FL Q+
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

783) ES1_25190 in NC_021043


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1012),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 183/406 (46%), Positives = 277/406 (69%), Gaps = 9/406 (2%)

Query  12   TTDTYKYLGKIEKIVGMTIEASGPLCSIGDVCRIYTKDMKSHIPAEVVGFNEHKVLLMPY  71
              D Y   G+I+ + +  ++A  P   +G++C I      ++  AEVVG+N  K LL P+
Sbjct  15   PPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEELAEVVGINGSKALLSPF  70

Query  72   TDLEGIGPGSIVDNTGDKLNVRVGDKLIGRIIDALGNPLDDGE--PIEYTDTVPIAGIPV  129
            T   G+  G  V     + +V VG+ L+GR+ID++G PLD+ E   +   D     ++P 
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD---YDAMPP  127

Query  130  NPLTRPKIHEPIELGVKAIDGLLTMGKGQRMGIFAGSGVGKSTLMGMIARKVKADLNVIA  189
             ++ R  I +P+  G++AID++ T G GQR+GIF+++GVGKSTL++M+     AD NV+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  190  LVGERGREVREFIENDLGEEGMARSVVVVATSDQPAMMRNKCPMTATAIAEYFCSQGKDV  249
            L+GERGREVREFI+  L+EE   R V+VVATSD+PA+ R +    AT+IAE+F  +GK V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  250  LLMMDNLTRFAMAQREIGLSTGEPPVARGYTPSIYAAMPKLLERAGNFEKGSITGIYAVL  309
            +L+ D+LTR+A A REI+L++GE +V+  Y P++++A+P+LLER+G  EKGSIT++Y+VL
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVL  307

Query  310  VEGDDTNEPISDTVRGIIDGHIVLSRKIAAQNHYPAIDILPSISRLMSAIADPEHNKAAG  369
            VEGDD NEP++D VR+++DGHIVLSR++A + HYPAID+L+++SR+ + ++  EH + A+
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  370  KlrnllalynnnadlISIGAYKKGTNPALDEAIKKIDKINDFLMQG  415
             LR  LALY++   LI IG Y++G +   D AI     I  FL Q+
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

784) VPBB_A1400 in NC_019971


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1012),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 166/365 (46%), Positives = 257/365 (71%), Gaps = 3/365 (0%)

Query  66   AQVVGFDHTVAYLMPIRRLGGLFAGAKVIPLDGDSTVQLSSQWMGRVVNGLGEPLDDGMP  125
            A+VVG++ + A L P+   +GL  G +V++L     V ++   +GRV++G+G PLD G  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRE  113

Query  126  LKGGDRVSLEPKPINPLKRRPVDTPLNVGVRAINGLLTVGKGQRIGLMAGSGVGKSVLMG  185
            L    +   ++ P  ++ R+P+  PL  G+RAI+++ T G GQR+G+ +++GVGKS L++
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  186  MITKNTEADVIVVGLIGERGREVREFIERNLTPEAREKAIIIAAPADESPLMRLRATLLC  245
            M+ +  +AD  V+ LIGERGREVREFI+  L+ E+R + +I+ A +D ++L R+RA ++ 
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  246  HRVAEYFRDQGKDVLLLMDSLTRYAMAQREIALSLGEPPASRGYPPSVFSVLPQLLERAG  305
              +AE+FRD+GK V+LL DSLTRYA A REIAL+ GE + S  YPP+VFS LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  306  NSENPHGSLTAIYTVLAEGDDQQDPVVDSARAILDGHVVLSRQLAEQGHYPAIDINASIS  365
             +E+  GS+TA+YTVL EGDD ++P+ D  R++LDGH+VLSR+LAE+GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  366  RCMSTCTQPAHSTIANNFRQMYSNYLQVKELLPLGGYQPGQDPELDQSVSMYPHLRSYLQ  425
            R  +  T   H  +A  +R+  + Y +V  L+ +G YQ G D + D+++  YP++ ++L+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  426  QSANE  430
            QS +E
Sbjct  412  QSKDE  416

785) fliI in NC_021822


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1012),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 166/365 (46%), Positives = 257/365 (71%), Gaps = 3/365 (0%)

Query  66   AQVVGFDHTVAYLMPIRRLGGLFAGAKVIPLDGDSTVQLSSQWMGRVVNGLGEPLDDGMP  125
            A+VVG++ + A L P+   +GL  G +V++L     V ++   +GRV++G+G PLD G  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRE  113

Query  126  LKGGDRVSLEPKPINPLKRRPVDTPLNVGVRAINGLLTVGKGQRIGLMAGSGVGKSVLMG  185
            L    +   ++ P  ++ R+P+  PL  G+RAI+++ T G GQR+G+ +++GVGKS L++
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  186  MITKNTEADVIVVGLIGERGREVREFIERNLTPEAREKAIIIAAPADESPLMRLRATLLC  245
            M+ +  +AD  V+ LIGERGREVREFI+  L+ E+R + +I+ A +D ++L R+RA ++ 
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  246  HRVAEYFRDQGKDVLLLMDSLTRYAMAQREIALSLGEPPASRGYPPSVFSVLPQLLERAG  305
              +AE+FRD+GK V+LL DSLTRYA A REIAL+ GE + S  YPP+VFS LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  306  NSENPHGSLTAIYTVLAEGDDQQDPVVDSARAILDGHVVLSRQLAEQGHYPAIDINASIS  365
             +E+  GS+TA+YTVL EGDD ++P+ D  R++LDGH+VLSR+LAE+GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  366  RCMSTCTQPAHSTIANNFRQMYSNYLQVKELLPLGGYQPGQDPELDQSVSMYPHLRSYLQ  425
            R  +  T   H  +A  +R+  + Y +V  L+ +G YQ G D + D+++  YP++ ++L+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  426  QSANE  430
            QS +E
Sbjct  412  QSKDE  416

786) VPA1533 in NC_004605


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1012),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 166/365 (46%), Positives = 257/365 (71%), Gaps = 3/365 (0%)

Query  66   AQVVGFDHTVAYLMPIRRLGGLFAGAKVIPLDGDSTVQLSSQWMGRVVNGLGEPLDDGMP  125
            A+VVG++ + A L P+   +GL  G +V++L     V ++   +GRV++G+G PLD G  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRE  113

Query  126  LKGGDRVSLEPKPINPLKRRPVDTPLNVGVRAINGLLTVGKGQRIGLMAGSGVGKSVLMG  185
            L    +   ++ P  ++ R+P+  PL  G+RAI+++ T G GQR+G+ +++GVGKS L++
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  186  MITKNTEADVIVVGLIGERGREVREFIERNLTPEAREKAIIIAAPADESPLMRLRATLLC  245
            M+ +  +AD  V+ LIGERGREVREFI+  L+ E+R + +I+ A +D ++L R+RA ++ 
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  246  HRVAEYFRDQGKDVLLLMDSLTRYAMAQREIALSLGEPPASRGYPPSVFSVLPQLLERAG  305
              +AE+FRD+GK V+LL DSLTRYA A REIAL+ GE + S  YPP+VFS LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  306  NSENPHGSLTAIYTVLAEGDDQQDPVVDSARAILDGHVVLSRQLAEQGHYPAIDINASIS  365
             +E+  GS+TA+YTVL EGDD ++P+ D  R++LDGH+VLSR+LAE+GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  366  RCMSTCTQPAHSTIANNFRQMYSNYLQVKELLPLGGYQPGQDPELDQSVSMYPHLRSYLQ  425
            R  +  T   H  +A  +R+  + Y +V  L+ +G YQ G D + D+++  YP++ ++L+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  426  QSANE  430
            QS +E
Sbjct  412  QSKDE  416

787) fliI in NC_012440


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  271 bits (1012),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 176/411 (43%), Positives = 280/411 (69%), Gaps = 5/411 (1%)

Query  2    RLKERLRSIPRYKVKGKITGVVGPVIEAVLPKVSIGDACILENGLE-AEVVGFKDGKTLL  60
            RL+ +  +   Y   G+I +V + +++A LP V +G+ C +  G E AEVVG++++K+LL
Sbjct  8    RLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALL  67

Query  61   MAFDDTIGIRVGSWVEARQEPVSIEVGEELLGTVLDPFGKPLN-KDRINPSHHYYLKNAT  119
             +F  T G++ G  V A +    + VGE LLG V+D FG+PL+ ++  +     Y     
Sbjct  68   SPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY-DAMP  126

Query  120  INPLDRERIKEPLDVGVRSINALLTIGKGQRIGIFSGAGVGKSTLLGMISRFTEADVNVI  179
              ++ R+ I +PL  G+R+I+++ T G GQR+GIFS++GVGKSTLL+M+    +AD NV+
Sbjct  127  PPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  180  ALIGERGREVREFIEDNLGEEGLKKSVVIVATSDQTPLAKIRAAYSAIAVAKFFSNSGKN  239
             LIGERGREVREFI+  L+EE  K+ V++VATSD+ +L ++RA + A ++A FF ++GK 
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  240  VLFLLDSLTRLAMAQREIGLAVGEPPTTKGYTPSVFALLPKFIEQAGNFYNRGSITGIYT  299
            V++L DSLTR A A REI+LA GE + +  Y P+VF+ LP+++E++G   ++GSIT++YT
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYT  305

Query  300  VLVEGDDITMDPVADAAMGFLDGHIVLSRELANKRVFPAIDVLKSVSRLMPQIVSDDILK  359
            VLVEGDD+  +P+AD   ++LDGHIVLSR LA++  +PAIDVL ++SR+ P + S++  +
Sbjct  306  VLVEGDDMN-EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  360  YQGIFTEIESIYREAEDMINLGLYKKGTTPKVDLAIQMHSRMEGFIKQDMH  410
              +I+    ++Y+E E +I +G Y++G     D AI+  + +  F++Q  +
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD  415

788) USDA257_p02820 in NC_018179


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1009),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 191/378 (51%), Positives = 278/378 (74%), Gaps = 5/378 (1%)

Query  36   RGRITRAVGTLIHAVLPEARIGELCLLQDTRTGLSLEAEVIGLLDNGVLLTPIGGLAGLS  95
            +GRI    +TL++A LP   +GELC     + G  L AEV+G+ ++  LL+P+ + AGL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELC---CIKPGEEL-AEVVGINGSKALLSPFTSTAGLH  77

Query  96   SRAEVVSTGRMREVPIGPDLLGRVIDSRCRPLDGKGEVKTTEVRPLHGRAPNPMTRRMVE  155
               +V++  R ++VP+G  LLGRVID+  RPLDG+ E+     +  ++ +P +M R+ + 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPIT  136

Query  156  RPFPLGVRALDGLLTCGEGQRIGIYGEPGGGKSTLISQIVKGAAADVVIVALIgergrev  215
            +P+  G+RA+D++ TCGEGQR+GI++ PG GKSTL++ + +++ AD  ++ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  216  refverHLGEEGLRRAIVVVETSDRSATERAQCAPMATALAEYFREQGLRVALLLDSLTR  275
            REF++  L+EE  +R ++VV TSDR+A ER +   +AT++AE+FR++G RV LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  276  FCRAMREIGLAAGEPPTRRGFPPSVFAALPGLLERAGMGERGSITAFYTVLVEGDGTGDP  335
            + RA REI+LAAGE +    +PP+VF+ALP LLER+GMGE+GSITAFYTVLVEGD+  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  336  IAEESRGIVDGHIVLSRALAARSHFPAIDVLQSRSRVMDAVVSETHRKAASFFRDLLARY  395
            +A+E R+++DGHIVLSR LA R+H+PAIDVL + SRV   V S+ HR+ A+++R  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  396  AECEFLINVGEYKQGGDP  413
             E E+LI +GEY++G D 
Sbjct  377  QEVELLIRIGEYQRGVDT  394

789) Pmen_0041 in NC_009439


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1009),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 208/420 (50%), Positives = 296/420 (71%), Gaps = 14/420 (3%)

Query  29   GRVSAVSGILLECQVPAAKVGELCEVSKADGSNMLAEIVGFTPDCTLLSALGTPDGIQVG  88
            GR+  VS+ LL+  +P+  +GELC +  ++    LAE+VG+    +LLS++ +  G++ G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  89   ATIRPLGIAHRIGVDDSLLGSVLDGFGRPLLGQAQGAFAGPHDARQTLPVIADALPPTQ-  147
              + +L   H++ V+++LLG V+DGFGRPL G+       P+  ++      DA+PP   
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL-----PEVCWKDY----DAMPPPAM  130

Query  148  -RPRITTALPTGIRSIDSAMLLGEGQRVGLFAGAGCGKTTLMAELARNMACDVIVFGLIG  206
             R  IT +L TGIR+IDS    GEGQRVG+F+++G GK+TL+A L      D  V+ LIG
Sbjct  131  VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG  190

Query  207  ERGRELREFLDHELDDTLRKRSVLVCATSDRSSMeraraaftataiaeayrarGLKVLLL  266
            ERGRE+REF+D  L +  RKR V+V ATSDR+++ER RA F AT+IAE +R  G +V+LL
Sbjct  191  ERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLL  250

Query  267  IDSLTRFARAQREIGIAAGEPLGRGGLPPSVYTLLPQLVERAGMSESGSITALYTVLIEQ  326
             DSLTR+ARA REI++AAGE    G  PP+V++ LP+L+ER+GM+E GSITA+YTVL+E 
Sbjct  251  ADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEG  310

Query  327  DSMNDPVADEVRSLLDGHIVMSRKLAEKGHYPAIDVPASISRVLSNVAPREHQrannrlr  386
            D MN+P+ADEVRSLLDGHIV+SR+LAE+GHYPAIDV A++SRV++ V+++EH++    LR
Sbjct  311  DDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILR  370

Query  387  rlmaayrQVEMLLRLGEYQPGTDPVTDCAVQLHEPINAFLRQDLREPSPLPVTLEALMQL  446
            R +A Y++VE+L+R+GEYQ G D  TD A++    I +FLRQ   E     + +E L Q+
Sbjct  371  RRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

790) Bphyt_5207 in NC_010676


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1011),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 180/373 (49%), Positives = 266/373 (72%), Gaps = 8/373 (2%)

Query  53   RAEPQIGEVVGFSQEGALVVPLDGLAGLSDITQVEGCGLSWGRLDAL--DMLGRVVDGLG  110
            ++  +++EVVG++   AL+ P+ + AGL    QV +  L + +  ++   +LGRV+DG+G
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMA--LRRRHQVPVGEALLGRVIDGFG  106

Query  111  RPLDGRVAPKAVSAQHSMNILSHINPLDRPVISTPFPTGVRVIDGLLSCGVGQRVGIFAA  170
            RPLDGR  P     +   + ++   ++ R  I+ P+ TG+R ID++ +CG GQRVGIF+A
Sbjct  107  RPLDGRELPEVCWKDY--DAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSA  163

Query  171  AGGGKSTLMGMIANGASVDAIVVALIGERGREVGEFIHDHLGA-RRASSIVIASTSERPA  229
            +G GKSTL++M+ N++  D+ V+ LIGERGREV EFI+  L+   R   +++ +TS+RPA
Sbjct  164  PGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPA  223

Query  230  AERIKAAELACRVASDLRAEGKHVLLLFDSLTRYARALREVGLAVGEPPVRRGYPPRVFA  289
             ER++A  +A  +A  +R +GK+V+LL DSLTRYARA RE++LA GE +V   YPP VF+
Sbjct  224  LERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFS  283

Query  290  ELPRLIETAGLTRQGAVTAFFTVLAEDEEMSDPVAEEARSLLDGHIQLSGRLGGAGHYPA  349
             LPRL+E +G+  +G++TAF+TVL E+++M++P+A+E RSLLDGHI LS RL+  GHYPA
Sbjct  284  ALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  350  IDVLKSKSRVMTRVTSRAHRDDAGRVRGWMSRYQEVELLLQIGEYRRGNDSASDLAIDRH  409
            IDVL + SRV   VTS+ HR+ A+ +R +++ YQEVELL++IGEY+RG D+ +D AID  
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  410  EMIERFLRQRHDE  422
              I  FLRQ  DE
Sbjct  404  PDICTFLRQSKDE  416

791) Oter_0419 in NC_010571


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1009),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 204/417 (49%), Positives = 293/417 (71%), Gaps = 5/417 (1%)

Query  25   RLGAVTGVAGLIIESDGPNVGLGELCLVRSPRSEFTVRAEVVGFREHRVLLMPLGDATGL  84
            R G + +V++ ++++  P V +GELC ++ P  E+   AEVVG+   + LL P+  ++GL
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  85   HVGCEVAACDRPPLPKPGPEMLGRVLDALGRPYDGLGMLPVDRSVGRDATPPHPLRRQRI  144
            H G +V A  R      G  +LGRV+D++GRP DG  +  V +  + DA PP ++ RQ I
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK-DYDAMPPPAMVRQPI  135

Query  145  HHSFQTGVRALDAFTPFGRGQRLGLFAGSGVGKSTLMGMIARGSEADVVVVALVGERGRE  204
             +++ TG+RA+D+ +  G GQR+G+F+++GVGKSTL++M+  +++AD  V+ L+GERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  205  VREFIEKDLGPEGLKRAIVVVATSDTpaplrlraaftataiaeawraeGKNVLFMMDSVT  264
            VREFI+  L+ E  KR ++VVATSD PA  R+RA F AT+IAE  R +GK V+++ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  265  RFAMAQREIGLAVGEPAATRGYTPSVFALLPRLLERTGAGELGAITALYTVLVEGDDMNE  324
            R+A A REI+LA GE A +  Y P+VF+ LPRLLERTG GE G+ITA+YTVLVEGDDMNE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  325  PVADAVRGILDGHVVLSRALAHFNHYPAIDVLESVSRLIRDVCTPDEVALAAKAREHLAL  384
            P+AD VR++LDGH+VLSR LA+  HYPAIDVL ++SR++  V + ++  LAA  R +LAL
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  385  YRKNEDLISIGAYQKGANAALDRAIALHEPLRGFLRQPIEEHTPREQSFQLLKKILT  441
            Y+  E LI IG YQ+G ++  D+AI     +  FLRQ+ +E    E  ++ L +ILT
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

792) yscN in NC_018000


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1010),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 211/438 (49%), Positives = 312/438 (72%), Gaps = 9/438 (2%)

Query  9    SGDLIRRLRERALGSETRPVHGRVRRITGIIVHATAPMVRIGELCHLRDPVSGATVPAEV  68
              +L++RLR +   ++     GR++ +++ +++A  P V +GELC ++   +G  + AEV
Sbjct  2    KNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIK---PGEEL-AEV  57

Query  69   VGFEDEEAVLTPIGDLDGMSTRAEVIATGKTLQIPVCDDLLGRVLNPLGEFLDFSGDRTL  128
            VG+++  A+L+P+    G+    +V+A  +  Q+PV + LLGRV++ +G  LD   +R L
Sbjct  58   VGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD---GREL  114

Query  129  PLVTDTYYPTHRPPPPALHRDLITEPLQLGIRAIDGLLTVARGQRVGIFGEPGVGKSSLL  188
            P V    Y +   PPPA+ R+ IT+PL  GIRAID++ T + GQRVGIF+ PGVGKS+LL
Sbjct  115  PEVCWKDYDAM--PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  189  SAIVRGTKADviiigligergrevreFIEGQLGEEGrrrsvvvvATSDRPAIERVKaaya  248
            + +  +  AD  ++ LIGERGREVREFI+  L+EE R+R V+VVATSDRPA+ERV+A + 
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  249  ataiaEYFRDQRRDVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSLFAALPRLLERA  308
            AT+IAE+FRD+ + V+LL DS+TR+ARA REI+LAAGE +    YPP++F+ALPRLLER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  309  GPGQGGSITALYTVLTEGDGTLDPVAEETKAILDGHIMLSSDLAERNFFPAIDILKSRSR  368
            G G+ GSITA+YTVL EGD+  +P+A+E +++LDGHI+LS  LAER  +PAID+L + SR
Sbjct  293  GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  369  LMETIASRTHRDDAARIRTLLARFEEIELLLRVGEYERGADALSDEAIDKRDAIDAFLRQ  428
            +   ++S+ HR+ AA +R  LA ++E+ELL+R+GEY+RG D+ +D AID    I +FLRQ
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  429  ESDAFSPLEATVEQLKRL  446
              D     E  +E+L ++
Sbjct  413  SKDEVCGPELLIEKLHQI  430

793) fliI in NC_013971


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1010),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 189/409 (47%), Positives = 268/409 (66%), Gaps = 15/409 (3%)

Query  27   RYGRLIRATGLVLEATGLQLPLGATCVIERQDNLGIGEVESEVVGFNGQKLLLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I   ++L+      EVVG+NG K LL P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA------EVVGINGSKALLSPFTSTA  74

Query  87   GIVPGARVYARVSGDSQHSAKQLMLGPELLGRVLDGSGRPLDGLPAPETGYRAPLITPPF  146
            G+  G +V A       +   Q+ +G  LLGRV+DG GRPLDG   PE   +     PP 
Sbjct  75   GLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP-  127

Query  147  NPLQRTPITEVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVG  206
             ++ R PIT+ L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  207  LIGERGREVKDFIENILGSEGRARAVVIAAPADVSPLLRMQGASYATRIAEDFRDRGQHV  266
            LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  267  LLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIDGGGSITAFYT  326
            +L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYT
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYT  305

Query  327  VLTEGDDQQDPIADSARAILDGHIVLSRRLAESGHYPAIDIEASISRVMAHLIDETHYAR  386
            VL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SRV + +  + H   
Sbjct  306  VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL  365

Query  387  VRQFKQLLSSYQRNRDLVSVGAYAAGTDPTLDKAIKLYPELEAFLQQGM  435
               +++ L+ YQ    L+ +G Y  G D   DKAI  YP++ +FL+Q+ 
Sbjct  366  AAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

794) fliI1 in NC_013961


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1010),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 189/409 (47%), Positives = 268/409 (66%), Gaps = 15/409 (3%)

Query  27   RYGRLIRATGLVLEATGLQLPLGATCVIERQDNLGIGEVESEVVGFNGQKLLLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I   ++L+      EVVG+NG K LL P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA------EVVGINGSKALLSPFTSTA  74

Query  87   GIVPGARVYARVSGDSQHSAKQLMLGPELLGRVLDGSGRPLDGLPAPETGYRAPLITPPF  146
            G+  G +V A       +   Q+ +G  LLGRV+DG GRPLDG   PE   +     PP 
Sbjct  75   GLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP-  127

Query  147  NPLQRTPITEVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVG  206
             ++ R PIT+ L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  207  LIGERGREVKDFIENILGSEGRARAVVIAAPADVSPLLRMQGASYATRIAEDFRDRGQHV  266
            LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  267  LLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIDGGGSITAFYT  326
            +L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYT
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYT  305

Query  327  VLTEGDDQQDPIADSARAILDGHIVLSRRLAESGHYPAIDIEASISRVMAHLIDETHYAR  386
            VL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SRV + +  + H   
Sbjct  306  VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL  365

Query  387  VRQFKQLLSSYQRNRDLVSVGAYAAGTDPTLDKAIKLYPELEAFLQQGM  435
               +++ L+ YQ    L+ +G Y  G D   DKAI  YP++ +FL+Q+ 
Sbjct  366  AAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

795) fliI in NC_017538


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1010),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 178/382 (47%), Positives = 267/382 (70%), Gaps = 7/382 (1%)

Query  56   EVIGFTGSNAVVMPFAGLEGVRRGCRAIIVNAASQVRPCAAWLGRVVNAMGEPIDGKGPL  115
            EV+G+ GS+A++ PF++  G++ G + + +    QV    A LGRV+++ G P+DG+  L
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-L  114

Query  116  PQGSVPVSFRNLPPPAHARKRVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLS  175
            P+      +  +PPPA  R+ + +PL  G+RA+++  TC  GQR+GIF+++GVGKS LL+
Sbjct  115  PEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  176  MLARNVDADISVIGLVGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYLT  235
            ML    DAD +V+ L+GERGREV+EF++  L+EE   R V+VVATSD PAL R +A +++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  236  LAIAEYFRDQDQSVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAG  295
             +IAE+FRD+++ V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  296  PGLGEGTITGIFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINILKSVSR  355
             G   G+IT+++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG+YPAI++L ++SR
Sbjct  294  MG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  356  TMPKSADPEF--LPVIMRGRQVMATYADMEELIRLGAYRAGSSPEVDEAIRLHEPLEDFL  413
              P  +  E   L+ I+R R  +A Y ++E LIR+G Y+ G   + D AI     +  FL
Sbjct  353  VFPVVTSHEHRQLAAILRRR--LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  414  RQAKDEATGLASGYQQLQQILS  435
            RQ+KDE  G     ++L+QIL+
Sbjct  411  RQSKDEVCGPELLIEKLHQILT  432

796) fliI in NC_011386


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1010),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 178/382 (47%), Positives = 267/382 (70%), Gaps = 7/382 (1%)

Query  56   EVIGFTGSNAVVMPFAGLEGVRRGCRAIIVNAASQVRPCAAWLGRVVNAMGEPIDGKGPL  115
            EV+G+ GS+A++ PF++  G++ G + + +    QV    A LGRV+++ G P+DG+  L
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-L  114

Query  116  PQGSVPVSFRNLPPPAHARKRVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLS  175
            P+      +  +PPPA  R+ + +PL  G+RA+++  TC  GQR+GIF+++GVGKS LL+
Sbjct  115  PEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  176  MLARNVDADISVIGLVGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYLT  235
            ML    DAD +V+ L+GERGREV+EF++  L+EE   R V+VVATSD PAL R +A +++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  236  LAIAEYFRDQDQSVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAG  295
             +IAE+FRD+++ V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  296  PGLGEGTITGIFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINILKSVSR  355
             G   G+IT+++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG+YPAI++L ++SR
Sbjct  294  MG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  356  TMPKSADPEF--LPVIMRGRQVMATYADMEELIRLGAYRAGSSPEVDEAIRLHEPLEDFL  413
              P  +  E   L+ I+R R  +A Y ++E LIR+G Y+ G   + D AI     +  FL
Sbjct  353  VFPVVTSHEHRQLAAILRRR--LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  414  RQAKDEATGLASGYQQLQQILS  435
            RQ+KDE  G     ++L+QIL+
Sbjct  411  RQSKDEVCGPELLIEKLHQILT  432

797) fliI in NC_015684


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1010),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 178/382 (47%), Positives = 267/382 (70%), Gaps = 7/382 (1%)

Query  56   EVIGFTGSNAVVMPFAGLEGVRRGCRAIIVNAASQVRPCAAWLGRVVNAMGEPIDGKGPL  115
            EV+G+ GS+A++ PF++  G++ G + + +    QV    A LGRV+++ G P+DG+  L
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-L  114

Query  116  PQGSVPVSFRNLPPPAHARKRVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLS  175
            P+      +  +PPPA  R+ + +PL  G+RA+++  TC  GQR+GIF+++GVGKS LL+
Sbjct  115  PEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  176  MLARNVDADISVIGLVGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYLT  235
            ML    DAD +V+ L+GERGREV+EF++  L+EE   R V+VVATSD PAL R +A +++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  236  LAIAEYFRDQDQSVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAG  295
             +IAE+FRD+++ V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  296  PGLGEGTITGIFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINILKSVSR  355
             G   G+IT+++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG+YPAI++L ++SR
Sbjct  294  MG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  356  TMPKSADPEF--LPVIMRGRQVMATYADMEELIRLGAYRAGSSPEVDEAIRLHEPLEDFL  413
              P  +  E   L+ I+R R  +A Y ++E LIR+G Y+ G   + D AI     +  FL
Sbjct  353  VFPVVTSHEHRQLAAILRRR--LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  414  RQAKDEATGLASGYQQLQQILS  435
            RQ+KDE  G     ++L+QIL+
Sbjct  411  RQSKDEVCGPELLIEKLHQILT  432

798) Alvin_2939 in NC_013851


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1010),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 177/404 (44%), Positives = 274/404 (68%), Gaps = 3/404 (0%)

Query  35   PAPQPEGRLSRMVGMTLEAEGIRLPVGGRAAIHTANGTRLGAEVVGFQGERTFLMPEGKL  94
            P+P+   R +R+ +++      +LP    + +   +     AEVVG++G +++L P    
Sbjct  14   PPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTST  73

Query  95   EGLAPGARIEPLEQARRIPVGPALLGRVVDALGKPLDGGGPIRTAEMAPIEGRPINPLGR  154
             GL  G ++ +L + +++PVG ALLGRV+D++G+PLDG   +        ++ P  ++ R
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVR  132

Query  155  VPVTEPLDVGIRALNGLLSVGRGQRIGLFAGSGVGKSVLLGMMTRHTAADVIVVGLIGER  214
             P+T+PL  GIRA++++ + G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  215  GREVNEFIYDILDEESRKRTVVVAVPADQSPLLRQHGAWVSTTIAESFRDRGLNVLLLMD  274
            GREV EFI   L EE+RKR V+V   +D+++L R ++  V+TTIAE FRD G  V+LL D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  275  SLTRFAQGAREIAMAIGEPPATKGYSASVFARLPQLVERAGNGDKGGGSITAFYTVLAEG  334
            SLTR+A++AREIA+A GE + +  Y+++VF+ LP+L+ER+G G+K  GSITAFYTVL EG
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEG  310

Query  335  DDQNDPIVDSARAILDGHVVLSREIAETGRYPAIDVGASVSRVMSAVVTPEHQKAAYRFR  394
            DD N+P+ D  R++LDGH+VLSR +AE G+YPAIDV A++SRV + V + EH++ A  +R
Sbjct  311  DDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILR  370

Query  395  NLMSTYARNRDLIAVGAYRKGSDPQLDEAVAMNPRLEAYLGQNR  438
              ++ Y     LI +G Y++G D + D A+   P + ++L Q++
Sbjct  371  RRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

799) Dd1591_1889 in NC_012912


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1009),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 200/404 (50%), Positives = 286/404 (71%), Gaps = 11/404 (2%)

Query  50   PNARIGDLCLVERNDSSQVLAEIVGFSPSNTFLSALGALDGIAQGAVVTPLYQPHCVQVS  109
            P   +G+LC +   +    LAE+VG++ S+++LS++ +  G+  G  V +L + H V V+
Sbjct  38   PGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVG  94

Query  110  DALFGSVLDGFGRPLEEGGHSAFVEPGDLNANPMPVIGDAPPPTERPRIADPLPTGMRAI  169
            +AL+G V+DGFGRPL+      + E    + ++MP     PP+  R  I++PL TG+RAI
Sbjct  95   EALLGRVIDGFGRPLDG---RELPEVCWKDYDAMP-----PPAMVRQPITQPLMTGIRAI  146

Query  170  DGLLTIGCGQRVGVFAGAGCGKTTLLAELARNTPCDAIVFGLIGERGRELREFLDHELDE  229
            D++ T G GQRVG+F+++G GK+TLLA L      D+ V+ LIGERGRE+REF+D  L E
Sbjct  147  DSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSE  206

Query  230  QLRSRTVLVCSTSDRSSMeraraaftataiaeafraaGKQVLLIIDSLTRFARAQREIGL  289
            + R R V+V +TSDR+++ER RA F AT+IAE FR  GK+V+L+ DSLTR+ARA REI+L
Sbjct  207  ETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIAL  266

Query  290  ALGEPQGRGGLPPSVYTLLPRLVERAGQTRQGAITALYSVLIEQDSMNDPVADEVRSLID  349
            A GE    G  PP+V++ LPRL+ER+G   +G+ITA+Y+VL+E D MN+P+ADEVRSL+D
Sbjct  267  AAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLD  326

Query  350  GHIVLSRRLAERNHYPAIDVLMSLSRTMSNVVEREHTRNANAVRRLMAAYKQVEMLIRLG  409
            GHIVLSRRLAER HYPAIDVL +LSR  + V  +EH + A  +RR +A Y++VE+LIR+G
Sbjct  327  GHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIG  386

Query  410  EYQPGHDALTDAAVSANDDINRFLQQAMREPQSFEFIQSQLAEV  453
            EYQ G D+ TD A+ +  DI  FL+Q+  E  + E++  +L ++
Sbjct  387  EYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

800) Lcho_1019 in NC_010524


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1009),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 182/399 (46%), Positives = 265/399 (67%), Gaps = 26/399 (6%)

Query  48   VGSLCEVQMAGQPPVPAEVVGFAGDRAYLMPTGEVQGLVSGATVVPLETPVQAPVLGRTA  107
            +G LC ++ + +    AEVVG+ G +A L P     GL  G  V++L             
Sbjct  42   MGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALR------------  86

Query  108  HPWRRNEDRSRHLPVGDGLLGRVVDANGEPMDRLGPLQDVHPQPLARRPINAMDRDPVRT  167
                    R +++PVG++LLGRV+D+ G P+D    L +V  +     P  AM R+P+  
Sbjct  87   --------RRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  168  PLDTGVRSINALLTVGRGQRLGLFAGTGVGKSVLLGMMARYTEADVIVVGLIGERGREVK  227
            PL TG+R+I+++ T G GQR+G+F++ GVGKS LL+M+    +AD  V+ LIGERGREV+
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  228  EFIEDILGEEGRARSVVVAAPADSPPLTRMQGATYATAIAEYFRDQGRHVLLLMDSLTRF  287
            EFI+  L+EE R R V+V A +D P+L R+++   AT+IAE+FRD+G++V+LL DSLTR+
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  288  AMAQREIALAIGEPPATKGYPPSCFAKLPQLVERSGNGQKGQGSITAFYTVLSEGDDQQD  347
            A A REIALA GE + +  YPP+ F+ LP+L+ER+G G+K  GSITAFYTVL EGDD ++
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNE  315

Query  348  PIADAARGILDGHIVLSRELAESGHYPAIDIEKSISRVMTSVAAREHIEAARRMRQLLSR  407
            P+AD  R++LDGHIVLSR LAE GHYPAID+  ++SRV   V+++EH + A  +R+ L+ 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  408  VNKARDLIQLGAYAPGHDAELDAAVRAQPAIVALLQQDT  446
             +    LI++G Y  G D++ D A+ + P I ++L+Q  
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

801) fliI in NC_012115


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1008),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 167/376 (45%), Positives = 261/376 (70%), Gaps = 8/376 (2%)

Query  46   CSGNHEILGMVTALDENSFVVTPFSFLEGFKIGDKIYIDENGMQIPVGEGLLGRVVDPFM  105
            C    E L+ V +++ +  +++PF+   G+  G+++       Q+PVGE+LLGRV+D F 
Sbjct  47   CIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFG  106

Query  106  NPIDDKG--DIFFETKYPIMTKPISPMKRGVINEVFETKVKAIDGLLTCGKGQKLGIFAG  163
             P+D++   ++     Y  M  P  +M R  I + + T ++AID++ TCG GQ++GIF++
Sbjct  107  RPLDGRELPEVCW-KDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSA  163

Query  164  SGVGKSTLMSMIVKGASADIKVIALIGERGREIPEFIEHQLGGDLTN-TVIIVATSDDSA  222
            +GVGKSTL++M+ +++ AD +V+ LIGERGRE+ EFI+  L+ +  +  VI+VATSD +A
Sbjct  164  PGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPA  223

Query  223  LMRKYGAFSAMAVAEYFKDKNKDVLFLMDSITRFAMAQREIGLAMGEPPTSKGYPPSAIM  282
            L R  + F A ++AE+F+D+ K V++L DS+TR+A A REI+LA GE + S  YPP+ + 
Sbjct  224  LERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFS  283

Query  283  LLPQLMERAGKEKDKGSITAFFTVLVEGDDTSADPIADQARSILDGHFILSRELTDSGIY  342
             LP+L+ER+G   +KGSITAF+TVLVEGDD + +P+AD+ RS+LDGH++LSR L++ G Y
Sbjct  284  ALPRLLERTGMG-EKGSITAFYTVLVEGDDMN-EPLADEVRSLLDGHIVLSRRLAERGHY  341

Query  343  PPINILNSASRVMNNVVTKEHLQKAQKFKKLYSLLKENEVLIRIGAYQKGVDPELDEAIN  402
            P+I++L + SRV   V + EH Q A  +++  +L +E E+LIRIG YQ+GVD + D AI+
Sbjct  342  PAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAID  401

Query  403  KKEAMENFLKQSPNEL  418
                +  FL+QS +E+
Sbjct  402  TYPDICTFLRQSKDEV  417

802) fliI in NC_004459


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1009),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 179/398 (45%), Positives = 272/398 (69%), Gaps = 9/398 (2%)

Query  44   IGSLCLVETMTGQMEAEVVGFSGDNLFLMPSEQIGGILPGAKVTPLTSESGLPVGMELLG  103
            +G LC +    G+  AEVVG++G + +L P    +G+  G +V +L     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  104  RVIDGVGNPLDG--LGPIYTEHRASFNAEPINPLARKPITEPLDVGLKAINGLLTVGKGQ  161
            RVIDG G PLDG  L  +    +  ++A P  ++ R+PIT+PL  G++AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  162  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRsvvva  221
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+E+ RKR V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  222  apadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  281
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  282  YPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  341
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  342  MADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAYKPGTDP  401
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  402  AIDSAFTLKPKLDEYLQQRMKETVPYAMCVNMLKNVLG  439
              D A+   P +  +L+Q   E     + ++ L ++L 
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

803) VVMO6_00821 in NC_014965


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1009),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 179/398 (45%), Positives = 272/398 (69%), Gaps = 9/398 (2%)

Query  44   IGSLCLVETMTGQMEAEVVGFSGDNLFLMPSEQIGGILPGAKVTPLTSESGLPVGMELLG  103
            +G LC +    G+  AEVVG++G + +L P    +G+  G +V +L     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  104  RVIDGVGNPLDG--LGPIYTEHRASFNAEPINPLARKPITEPLDVGLKAINGLLTVGKGQ  161
            RVIDG G PLDG  L  +    +  ++A P  ++ R+PIT+PL  G++AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  162  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRsvvva  221
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+E+ RKR V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  222  apadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  281
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  282  YPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  341
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  342  MADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAYKPGTDP  401
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  402  AIDSAFTLKPKLDEYLQQRMKETVPYAMCVNMLKNVLG  439
              D A+   P +  +L+Q   E     + ++ L ++L 
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

804) fliI in NC_005139


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1008),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 179/398 (45%), Positives = 272/398 (69%), Gaps = 9/398 (2%)

Query  44   IGSLCLVETMTGQMEAEVVGFSGDNLFLMPSEQIGGILPGAKVTPLTSESGLPVGMELLG  103
            +G LC +    G+  AEVVG++G + +L P    +G+  G +V +L     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  104  RVIDGVGNPLDG--LGPIYTEHRASFNAEPINPLARKPITEPLDVGLKAINGLLTVGKGQ  161
            RVIDG G PLDG  L  +    +  ++A P  ++ R+PIT+PL  G++AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  162  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGRKRsvvva  221
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+E+ RKR V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  222  apadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  281
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  282  YPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  341
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  342  MADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAYKPGTDP  401
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  402  SIDSAFTLKPKLDEYLQQRMKETVPYAMCVNMLKNVLG  439
              D A+   P +  +L+Q   E     + ++ L ++L 
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

805) invC in NC_012214


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  270 bits (1008),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 281/409 (69%), Gaps = 14/409 (3%)

Query  8    RLAHPLRIQGNVIEAYLPGTKIGEICQIQKSLVESEVLGLAQITGFNNEHTFLSLLTDSQ  67
            R ++   + + +++A LPG  +GE+C I+ +        LA++ G+N   ++LS +T + 
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE------ELAEVVGINGSKALLSPFTSTA  74

Query  68   GFSRENVLLPTGKPLRVEVHEGIKGAIIDATG-TIKGHLVDMPVTPYTNVKSIMACGSAR  126
            G+   + +++  +  +V V E++ G +ID+ G  + G+  ++P     +  ++     + 
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR--ELPEVCWKDYDAM-----PP  127

Query  127  DFSLRKPITEPLLTGIRAIDGLLTCGQGQRIGIFATAGCGKTSLMNMLIEHSEADIYVIG  186
               +R+PIT+PL+TGIRAID++ TCG+GQR+GIF+++G GK++L+ ML + ++AD  V+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  187  LIGERGREVTEFVESMKKSSRRSRIVIVYATSDRSSVERSNAAQIASSIAEYFSELGNNV  246
            LIGERGREV EF++       R R VIV ATSDR+++ER  A  +A++IAE+F + G+ V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  247  LLFVDSITRYARALRDVALSMGEMPVRRGYPASVFEALPKLLERPGRFLTGSITAFYTVL  306
            +L+ DS+TRYARA R++AL+ GE +V   YP++VF ALP+LLER G    GSITAFYTVL
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVL  307

Query  307  IENEEDPDVIGDEVRSILDGHIYLSRKLAAKGHYPAINVLNSISRVFSQVTERNQQQMAN  366
            +E ++  + ++DEVRS+LDGHI LSR+LA +GHYPAI+VL ++SRVF+ VT ++++Q+A 
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  367  CFRDLLQRQRDMQLFIDLGEYHRGENENNDIAFDKNEQMEEFLKQDMTE  415
             +R  L   ++++L+I +GEY+RG + + D A+D   ++  FL+Q   E
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

806) fliI in NC_018632


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1007),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 182/370 (50%), Positives = 266/370 (72%), Gaps = 3/370 (0%)

Query  55   GEIEAEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLD  114
            GE  AEVVG+ +  + L P  +  G+  G +VM+L R+  +PVG +LLGRV+DG G+PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  115  GLGEINAEARAPTTRPPMNPLIRRPINTPMDVGVRAINALNTVGVGQRMGLFAGSGVGKS  174
            G  E+    +      P  +++R+PI  P+  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  G-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  175  VLLGMMTRGCEADvvvvglvgergrevKEFIHEILTEEERQRAVVVAAPADTSPLMRLKG  234
             LL+M+  + +AD  V+ L+GERGREV+EFI+  L+EE R+R V+V A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  235  CETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
               A TIAE+FRD+G +V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  295  ERAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIE  354
            ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR LA+ GHYPAID+ 
Sbjct  290  ERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  ASISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAIN  414
            A++SRV P+V S+EH+ +A  +R+  + Y++ + LI IG Y +G D   D AI + P I 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  ALLQQGMKQV  424
            ++L+Q+  +V
Sbjct  408  TFLRQSKDEV  417

807) fliI in NC_018679


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1006),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 182/370 (50%), Positives = 266/370 (72%), Gaps = 3/370 (0%)

Query  55   GEIEAEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLD  114
            GE  AEVVG+ +  + L P  +  G+  G +VM+L R+  +PVG +LLGRV+DG G+PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  115  GLGEINAEARAPTTRPPMNPLIRRPINTPMDVGVRAINALNTVGVGQRMGLFAGSGVGKS  174
            G  E+    +      P  +++R+PI  P+  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  G-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  175  VLLGMMTRGCEADvvvvglvgergrevKEFIHEILTEEERQRAVVVAAPADTSPLMRLKG  234
             LL+M+  + +AD  V+ L+GERGREV+EFI+  L+EE R+R V+V A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  235  CETAITIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
               A TIAE+FRD+G +V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  295  ERAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIE  354
            ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR LA+ GHYPAID+ 
Sbjct  290  ERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  ASISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAIN  414
            A++SRV P+V S+EH+ +A  +R+  + Y++ + LI IG Y +G D   D AI + P I 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  ALLQQGMKQV  424
            ++L+Q+  +V
Sbjct  408  TFLRQSKDEV  417

808) fliI in NC_018678


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1007),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 182/370 (50%), Positives = 266/370 (72%), Gaps = 3/370 (0%)

Query  55   GEIEAEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLD  114
            GE  AEVVG+ +  + L P  +  G+  G +VM+L R+  +PVG +LLGRV+DG G+PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  115  GLGEINADARAPTTRPPMNPLIRRPINTPMDVGVRAINALNTVGVGQRMGLFAGSGVGKS  174
            G  E+    +      P  +++R+PI  P+  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  G-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  175  VLLGMMTRGCEADvvvvglvgergrevKEFIHEILTEEERQRAVVVAAPADTSPLMRLKG  234
             LL+M+  + +AD  V+ L+GERGREV+EFI+  L+EE R+R V+V A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  235  CETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
               A TIAE+FRD+G +V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  295  ERAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIE  354
            ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR LA+ GHYPAID+ 
Sbjct  290  ERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  ASISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAIN  414
            A++SRV P+V S+EH+ +A  +R+  + Y++ + LI IG Y +G D   D AI + P I 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  ALLQQGMKQV  424
            ++L+Q+  +V
Sbjct  408  TFLRQSKDEV  417

809) fliI in NC_017445


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1007),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 188/409 (46%), Positives = 268/409 (66%), Gaps = 15/409 (3%)

Query  27   RYGRLIRATGLVLEATGLQLPLGATCVIERQDNMGIGEVESEVVGFNGQKLLLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I   ++++      EVVG+NG K LL P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA------EVVGINGSKALLSPFTSTA  74

Query  87   GIVPGARVYARVSGDSQHSAKQLMLGPELLGRVLDGSGRPLDGLPAPETGYRAPLITPPF  146
            G+  G +V A       +   Q+ +G  LLGRV+DG GRPLDG   PE   +     PP 
Sbjct  75   GLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP-  127

Query  147  NPLQRTPITEVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVG  206
             ++ R PIT+ L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  207  LIGERGREVKDFIENILGSEGRARAVVIAAPADVSPLLRMQGASYATRIAEDFRDRGQHV  266
            LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  267  LLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIDGGGSITAFYT  326
            +L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYT
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYT  305

Query  327  VLTEGDDQQDPIADSARAILDGHIVLSRRLAESGHYPAIDIEASISRVMAHLIDDTHYAR  386
            VL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SRV + +  + H   
Sbjct  306  VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL  365

Query  387  VRQFKQLLSSYQRNRDLVSVGAYAAGTDPTLDKAIKLYPELEAFLQQGM  435
               +++ L+ YQ    L+ +G Y  G D   DKAI  YP++ +FL+Q+ 
Sbjct  366  AAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

810) fliI in NC_017390


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1007),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 188/409 (46%), Positives = 268/409 (66%), Gaps = 15/409 (3%)

Query  27   RYGRLIRATGLVLEATGLQLPLGATCVIERQDNMGIGEVESEVVGFNGQKLLLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I   ++++      EVVG+NG K LL P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA------EVVGINGSKALLSPFTSTA  74

Query  87   GIVPGARVYARLSGDSQHSAKQLMLGPELLGRVLDGSGRPLDGLPAPETGYRAPLITPPF  146
            G+  G +V A       +   Q+ +G  LLGRV+DG GRPLDG   PE   +     PP 
Sbjct  75   GLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP-  127

Query  147  NPLQRTPITEVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVG  206
             ++ R PIT+ L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  207  LIGERGREVKDFIENILGSEGRARAVVIAAPADVSPLLRMQGASYATRIAEDFRDRGQHV  266
            LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  267  LLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIDGGGSITAFYT  326
            +L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYT
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYT  305

Query  327  VLTEGDDQQDPIADSARAILDGHIVLSRRLAESGHYPAIDIEASISRVMAHLIDDTHYAR  386
            VL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SRV + +  + H   
Sbjct  306  VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL  365

Query  387  VRQFKQLLSSYQRNRDLVSVGAYAAGTDPTLDKAIKLYPELEAFLQQGM  435
               +++ L+ YQ    L+ +G Y  G D   DKAI  YP++ +FL+Q+ 
Sbjct  366  AAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

811) fliI in NC_012214


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1007),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 188/409 (46%), Positives = 268/409 (66%), Gaps = 15/409 (3%)

Query  27   RYGRLIRATGLVLEATGLQLPLGATCVIERQDNMGIGEVESEVVGFNGQKLLLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I   ++++      EVVG+NG K LL P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA------EVVGINGSKALLSPFTSTA  74

Query  87   GIVPGARVYARLSGDSQHSAKQLMLGPELLGRVLDGSGRPLDGLPAPETGYRAPLITPPF  146
            G+  G +V A       +   Q+ +G  LLGRV+DG GRPLDG   PE   +     PP 
Sbjct  75   GLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP-  127

Query  147  NPLQRTPITEVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVG  206
             ++ R PIT+ L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  207  LIGERGREVKDFIENILGSEGRARAVVIAAPADVSPLLRMQGASYATRIAEDFRDRGQHV  266
            LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  267  LLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIDGGGSITAFYT  326
            +L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYT
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYT  305

Query  327  VLTEGDDQQDPIADSARAILDGHIVLSRRLAESGHYPAIDIEASISRVMAHLIDDTHYAR  386
            VL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SRV + +  + H   
Sbjct  306  VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL  365

Query  387  VRQFKQLLSSYQRNRDLVSVGAYAAGTDPTLDKAIKLYPELEAFLQQGM  435
               +++ L+ YQ    L+ +G Y  G D   DKAI  YP++ +FL+Q+ 
Sbjct  366  AAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

812) Dd586_1886 in NC_013592


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1006),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 200/395 (51%), Positives = 278/395 (71%), Gaps = 12/395 (3%)

Query  46   ESSLPNARIGDLCLIERHDHSPVLAEIVGFSPKNTFLSALGALDGIAQGAVVTPLYQPHC  105
            ++ LP   +G+LC I   ++   LAE+VG++  +++LS++ +  G+  G  V +L + H 
Sbjct  34   NAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQ  90

Query  106  VQVSEALFGSVLDGFGRPLEHGSHSAFVEPGSLSASPPMPVIGDAPPPTERPRIASPLPT  165
            V V+EAL+G V+DGFGRPL+ G +   +         +MP     PP+  R  I+ PL T
Sbjct  91   VPVGEALLGRVIDGFGRPLD-GRE---LPEVCWKDYDAMP-----PPAMVRQPITQPLMT  141

Query  166  GLRAIDGLLTIGCGQRVGIFAGAGCGKTTLLAELARNTPCDAIVFGLIGERGRELREFLD  225
            G+RAID++ T G GQRVGIF+++G GK+TLLA L      D+ V+ LIGERGRE+REF+D
Sbjct  142  GIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFID  201

Query  226  HELDAQLRSRTVLVCSTSDRSSMeraraaftataiaeafratGKQVLLIIDSLTRFARAQ  285
              L  + R R V+V +TSDR+++ER RA F AT+IAE FR  GK+V+L+ DSLTR+ARA 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  286  REIGLALGEPQGRGGLPPSVYTLLPRLVERAGQTRQGAITALYSVLIEQDSMNDPVADEV  345
            REI+LA GE    G  PP+V++ LPRL+ER+G   +G+ITA+Y+VL+E D MN+P+ADEV
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEV  321

Query  346  RSLIDGHIVLSRRLAERNHYPAIDVLMSLSRTMSNVVDTEHTRNANAVRRLMAAYKQVEM  405
            RSL+DGHIVLSRRLAER HYPAIDVL +LSR  + V   EH + A  +RR +A Y++VE+
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  406  LIRLGEYQPGHDALTDAAVNANDDINRFLQQAMRE  440
            LIR+GEYQ G D+ TD A+++  DI  FL+Q+  E
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

813) hrcN in NC_010694


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1005),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 206/411 (51%), Positives = 286/411 (70%), Gaps = 13/411 (3%)

Query  22   EGYAPVSRYGRVTGISGILIECTLPGARIGDLCRIQRSDGGSVLSEIVGFSPEKILLSAL  81
            +GY    R GR+ ++S+ L++  LPG  +G+LC I+ ++    L+E+VG++  K LLS++
Sbjct  17   DGY---CRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPF  70

Query  82   GALDGISQGAIIIPLYLPHSICVSERLLGSVLDGFGRALEPGGHSAFAKPGTKVRAVPVL  141
             +  G+  G  +++L   H + V+E LLG V+DGFGR+L+    +     +    +    
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP----  126

Query  142  NDAPPPTERPRIDTPLPTGLRAIDGLLTIGNGQRVGIFAGAGCGKTTLLAELARNTPCDA  201
               PP+  R  I  PL TG+RAID++ T G+GQRVGIF+++G GK+TLLA L      D+
Sbjct  127  ---PPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  202  IVFGLIGERGRELREFLDHELDEELRSRTVLLCATSDRSSMeraraaftataiaeafrae  261
             V+ LIGERGRE+REF+D  L EE R R V++ ATSDR+++ER RA F AT+IAE FR +
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  262  GKSVLLIVDSLTRFARAQREIglalgeppgrgglppSVYTLLPRLVERAGQTRQGAITAL  321
            GK V+L+ DSLTR+ARA REI+LA GE +  G  PP+V++ LPRL+ER+G   +G+ITA+
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  322  YSVLIEQDSMNDPVADEVRSLIDGHIVLSRRLAERNHYPAIDILASLSRTMSNVVEPTHM  381
            Y+VL+E D MN+P+ADEVRSL+DGHIVLSRRLAER HYPAID+LA+LSR  + V    H 
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  382  QQAGRLRSLMAAYQQVEMLIRLGEYQPGNDGLTDAAVNANDIINRFLRQSM  432
            Q A+ LR  +A YQ+VE+LIR+GEYQ G D  TD A+++   I  FLRQS 
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

814) fliI in NC_019393


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1006),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 182/370 (50%), Positives = 266/370 (72%), Gaps = 3/370 (0%)

Query  55   GEIEAEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLD  114
            GE  AEVVG+ +  + L P  +  G+  G +VM+L R+  +PVG +LLGRV+DG G+PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  115  GLGEIDAEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKS  174
            G  E+    +      P  +++R+PI  P+  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  G-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  175  VLLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKG  234
             LL+M+  + +AD  V+ L+GERGREV+EFI+  L+EE R+R V+V A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  235  CETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
               A TIAE+FRD+G +V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  295  ERAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIE  354
            ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR LA+ GHYPAID+ 
Sbjct  290  ERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  ASISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAIN  414
            A++SRV P+V S+EH+ +A  +R+  + Y++ + LI IG Y +G D   D AI + P I 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  ALLQQGMKQV  424
            ++L+Q+  +V
Sbjct  408  TFLRQSKDEV  417

815) fliI in NC_011138


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1006),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 182/370 (50%), Positives = 266/370 (72%), Gaps = 3/370 (0%)

Query  55   GEIEAEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLD  114
            GE  AEVVG+ +  + L P  +  G+  G +VM+L R+  +PVG +LLGRV+DG G+PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  115  GLGEIDAEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKS  174
            G  E+    +      P  +++R+PI  P+  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  G-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  175  VLLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKG  234
             LL+M+  + +AD  V+ L+GERGREV+EFI+  L+EE R+R V+V A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  235  CETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
               A TIAE+FRD+G +V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  295  ERAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIE  354
            ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR LA+ GHYPAID+ 
Sbjct  290  ERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  ASISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAIN  414
            A++SRV P+V S+EH+ +A  +R+  + Y++ + LI IG Y +G D   D AI + P I 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  ALLQQGMKQV  424
            ++L+Q+  +V
Sbjct  408  TFLRQSKDEV  417

816) fliI in NC_021710


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1005),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 182/370 (50%), Positives = 266/370 (72%), Gaps = 3/370 (0%)

Query  55   GEIEAEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLD  114
            GE  AEVVG+ +  + L P  +  G+  G +VM+L R+  +PVG +LLGRV+DG G+PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  115  GLGEIDAEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKS  174
            G  E+    +      P  +++R+PI  P+  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  G-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  175  VLLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKG  234
             LL+M+  + +AD  V+ L+GERGREV+EFI+  L+EE R+R V+V A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  235  CETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
               A TIAE+FRD+G +V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  295  ERAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIE  354
            ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR LA+ GHYPAID+ 
Sbjct  290  ERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  ASISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAIN  414
            A++SRV P+V S+EH+ +A  +R+  + Y++ + LI IG Y +G D   D AI + P I 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  ALLQQGMKQV  424
            ++L+Q+  +V
Sbjct  408  TFLRQSKDEV  417

817) fliI in NC_021717


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1005),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 182/370 (50%), Positives = 266/370 (72%), Gaps = 3/370 (0%)

Query  55   GEIEAEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLD  114
            GE  AEVVG+ +  + L P  +  G+  G +VM+L R+  +PVG +LLGRV+DG G+PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  115  GLGEIDAEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKS  174
            G  E+    +      P  +++R+PI  P+  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  G-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  175  VLLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKG  234
             LL+M+  + +AD  V+ L+GERGREV+EFI+  L+EE R+R V+V A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  235  CETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
               A TIAE+FRD+G +V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  295  ERAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIE  354
            ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR LA+ GHYPAID+ 
Sbjct  290  ERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  ASISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAIN  414
            A++SRV P+V S+EH+ +A  +R+  + Y++ + LI IG Y +G D   D AI + P I 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  ALLQQGMKQV  424
            ++L+Q+  +V
Sbjct  408  TFLRQSKDEV  417

818) fliI in NC_021712


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1005),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 182/370 (50%), Positives = 266/370 (72%), Gaps = 3/370 (0%)

Query  55   GEIEAEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLD  114
            GE  AEVVG+ +  + L P  +  G+  G +VM+L R+  +PVG +LLGRV+DG G+PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  115  GLGEIDAEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKS  174
            G  E+    +      P  +++R+PI  P+  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  G-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  175  VLLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKG  234
             LL+M+  + +AD  V+ L+GERGREV+EFI+  L+EE R+R V+V A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  235  CETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
               A TIAE+FRD+G +V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  295  ERAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIE  354
            ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR LA+ GHYPAID+ 
Sbjct  290  ERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  ASISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAIN  414
            A++SRV P+V S+EH+ +A  +R+  + Y++ + LI IG Y +G D   D AI + P I 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  ALLQQGMKQV  424
            ++L+Q+  +V
Sbjct  408  TFLRQSKDEV  417

819) fliI in NC_021714


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1006),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 182/370 (50%), Positives = 266/370 (72%), Gaps = 3/370 (0%)

Query  55   GEIEAEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLD  114
            GE  AEVVG+ +  + L P  +  G+  G +VM+L R+  +PVG +LLGRV+DG G+PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  115  GLGEIDAEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKS  174
            G  E+    +      P  +++R+PI  P+  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  G-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  175  VLLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKG  234
             LL+M+  + +AD  V+ L+GERGREV+EFI+  L+EE R+R V+V A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  235  CETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
               A TIAE+FRD+G +V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  295  ERAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIE  354
            ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR LA+ GHYPAID+ 
Sbjct  290  ERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  ASISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAIN  414
            A++SRV P+V S+EH+ +A  +R+  + Y++ + LI IG Y +G D   D AI + P I 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  ALLQQGMKQV  424
            ++L+Q+  +V
Sbjct  408  TFLRQSKDEV  417

820) fliI in NC_021713


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1006),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 182/370 (50%), Positives = 266/370 (72%), Gaps = 3/370 (0%)

Query  55   GEIEAEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLD  114
            GE  AEVVG+ +  + L P  +  G+  G +VM+L R+  +PVG +LLGRV+DG G+PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  115  GLGEIDAEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKS  174
            G  E+    +      P  +++R+PI  P+  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  G-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  175  VLLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKG  234
             LL+M+  + +AD  V+ L+GERGREV+EFI+  L+EE R+R V+V A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  235  CETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
               A TIAE+FRD+G +V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  295  ERAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIE  354
            ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR LA+ GHYPAID+ 
Sbjct  290  ERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  ASISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAIN  414
            A++SRV P+V S+EH+ +A  +R+  + Y++ + LI IG Y +G D   D AI + P I 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  ALLQQGMKQV  424
            ++L+Q+  +V
Sbjct  408  TFLRQSKDEV  417

821) fliI in NC_007481


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1006),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 181/369 (50%), Positives = 265/369 (72%), Gaps = 5/369 (1%)

Query  62   AEIVGFNDQTLYLMPNDHISGVLPGARVIPQLNDTGLPVGMSLLGRVVDGLGRPLDGLGK  121
            AE+VG+N+    L P    +G+  G +V++      +PVG +LLGRV+DG+GRPLDG  +
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG--R  112

Query  122  INAEHYLK-FAQKPINPLSRRPISQPMDVGVRAINSVITVGQGQRMGLFAGSGVGKSVLL  180
              +E   K +   P  ++ R+PI+QP+  G+RAI+SV T G+GQR+G+F+++GVGKS LL
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  181  GMMTRGSEADvivvglvgergrevkeFIEEILGVEGRKRSVVVAAPADSSPLMRLKGCES  240
            +M+  +++AD  V+ L+GERGREV+EFI+  L+ E RKR V+V A +D ++L R+++   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  241  AVTIAEYFRDQGLNVLLLLDSVTRYAMAQREIALAVGEPPATKGYPPSVFAKLPALVERA  300
            A TIAE+FRD+G  V+LL DS+TRYA A REIALA GE + +  YPP+VF+ LP L+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  301  GNGGEGQGSITAFFTVLSEGDDMQDPIADAARAILDGHIVLSRELADSGHYPAIDIEKSI  360
            G G   +GSITAF+TVL EGDDM++P+AD  R++LDGHIVLSR LA+ GHYPAID+  ++
Sbjct  293  GMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  361  SRVMPQVVSETHMQQARVLKQVYSMYQQNKDMITLGAYQKGTDQMLDQAINMMPRVNAFL  420
            SRV P V S+ H Q A +L++  ++YQ+   +I +G YQ+G D   D+AI+  P + +FL
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  421  QQGMRDVIS  429
            +Q+  +V +
Sbjct  411  RQSKDEVCG  419

822) hrcN in NC_014500


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1006),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 197/404 (49%), Positives = 287/404 (72%), Gaps = 11/404 (2%)

Query  51   PNARIGDLCLVARDDSSQVLAEIVGFSPENTFLSALGALDGIAQGAVVTPLYQPHCVQVS  110
            P   +G+LC +    +++ LAE+VG++  +++LS++ +  G+  G  V +L + H V V+
Sbjct  38   PGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVG  94

Query  111  DALFGSVLDGFGRPLEDGGHSAFVEPGSLNATPIPVIGDAPPPTERPRIADPLPTGMRAI  170
            +AL+G V+DGFGRPL++     + E    +  ++P     PP+  R  I++PL TG+RAI
Sbjct  95   EALLGRVIDGFGRPLDG---RELPEVCWKDYDAMP-----PPAMVRQPITQPLMTGIRAI  146

Query  171  DGLLTIGCGQRVGVFAGAGCGKTTLLAELARNTPCDAIVFGLIGERGRELREFLDHELDE  230
            D++ T G GQRVG+F+++G GK+TLLA L      D+ V+ LIGERGRE+REF+D  L E
Sbjct  147  DSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSE  206

Query  231  QLRSRTVLVCSTSDRSSMeraraaftataiaeafraaGKQVLLIIDSLTRFARAQREIGL  290
            + R R V+V +TSDR+++ER RA F AT+IAE FR  GK+V+L+ DSLTR+ARA REI+L
Sbjct  207  ETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIAL  266

Query  291  ALGEPQGRGGLPPSVYTLLPRLVERAGQTRQGAITALYSVLIEQDSMNDPVADEVRSLID  350
            A GE    G  PP+V++ LPRL+ER+G   +G+ITA+Y+VL+E D MN+P+ADEVRSL+D
Sbjct  267  AAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLD  326

Query  351  GHIVLSRRLAERNHYPAIDVLMSLSRTMSNVVERDHTRHANAVRRLMAAYKQVEMLIRLG  410
            GHIVLSRRLAER HYPAIDVL +LSR  + V  ++H + A  +RR +A Y++VE+LIR+G
Sbjct  327  GHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIG  386

Query  411  EYQPGHDAFTDAAVSANDDINRFLQQAMREPQGFDHIQSQLEEV  454
            EYQ G D+ TD A+ +  DI  FL+Q+  E  G + +  +L+++
Sbjct  387  EYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

823) spaI in NC_017390


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1006),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 172/398 (44%), Positives = 276/398 (70%), Gaps = 14/398 (3%)

Query  1    MIEAYLPGTKIGEICQIQKSLVESEVLGLAQITGFNNEHTFLSLLTDSQGFSRENVLLPT  60
            +++A LPG  +GE+C I+ +        LA++ G+N   ++LS +T + G+   + +++ 
Sbjct  32   LLNAWLPGVFMGELCCIKPGE------ELAEVVGINGSKALLSPFTSTAGLHCGQQVMAL  85

Query  61   GKPLRVEVHEGIKGAIIDATG-TIKGHLVDMPVTPYTNVKSIMACGSARDFSLRKPITEP  119
             +  +V V E++ G +ID+ G  + G+  ++P     +  ++     +    +R+PIT+P
Sbjct  86   RRRHQVPVGEALLGRVIDGFGRPLDGR--ELPEVCWKDYDAM-----PPPAMVRQPITQP  138

Query  120  LLTGIRAIDGLLTCGQGQRIGIFATAGCGKTSLMNMLIEHSEADIYVIGLIGERGREVTE  179
            L+TGIRAID++ TCG+GQR+GIF+++G GK++L+ ML + ++AD  V+ LIGERGREV E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  180  FVESMKKSSRRSRIVIVYATSDRSSVERSNAAQIASSIAEYFSELGNNVLLFVDSITRYA  239
            F++       R R VIV ATSDR+++ER  A  +A++IAE+F + G+ V+L+ DS+TRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  240  RALRDVALSMGEMPVRRGYPASVFEALPKLLERPGRFLTGSITAFYTVLIENEEDPDVIG  299
            RA R++AL+ GE +V   YP++VF ALP+LLER G    GSITAFYTVL+E ++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  300  DEVRSILDGHIYLSRKLAAKGHYPAINVLNSISRVFSQVTERNQQQMANCFRDLLQRQRD  359
            DEVRS+LDGHI LSR+LA +GHYPAI+VL ++SRVF+ VT ++++Q+A  +R  L   ++
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  360  MQLFIDLGEYHRGENENNDIAFDKNEQMEEFLKQDMTE  397
            ++L+I +GEY+RG + + D A+D   ++  FL+Q   E
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

824) Nwat_2202 in NC_014315


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1004),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 188/398 (48%), Positives = 277/398 (70%), Gaps = 6/398 (1%)

Query  57   VGGRCHILRQERLPVEAEVVGFAGERLFLMPIGDPRGLVPNAPVIPLRHGGRMAVGEAll  116
            +G  C I   E L   AEVVG+ G + +L P+    GL     V++LR+  +++VGEALL
Sbjct  42   MGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  117  grvldgggrplddlgplrATHRVSLEGQPINPLARQPIREPMDVGVAAINALLTIGRGQR  176
            GRV+DG GRPLD+        +   ++ P  ++ RQPI +P+  G+ AI+++ T G GQR
Sbjct  99   GRVIDGFGRPLDGRELPEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  177  MGLFAGSGVGKSVLLGMMTRYAKADVIVVGLIGERGREVQEFIENILGKEGLARSVVVAT  236
            +G+F+++GVGKS LL+M+   + AD  V+ LIGERGREV+EFI+  L+ E   R V+V +
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  237  PADHSPLMRIHGAMLATSIAEYFRDQGKQVLLLMDSLTRFGHAQRELALAIGEPPATRGY  296
             +D+++L R+++  +AT+IAE+FRD+GK+V+LL DSLTR+++A RE+ALA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  297  PPSVFAKIPQLLERAGNGRSGSGSITAFYTVLTEGDDPNDPVADSARAILDGHIVLSRRL  356
            PP+VF+ +P+LLER+G G    GSITAFYTVL EGDD N+P+AD  R++LDGHIVLSRRL
Sbjct  278  PPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  357  AEAGHYPAIDIEASISRVMSQITVPEHQQAAQQFKQIYSLYSQNQDLISVGAYSRGSDSR  416
            AE GHYPAID+ A++SRV + +T  EH+Q A  +++  +LY + + LI +G Y RG D+ 
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  417  LDEAVDKQPQFRSFLQQDMSRSFSVEESLERLQQALKA  454
             D A+D  P++ +FL+Q      + E  +E+L+Q L  
Sbjct  396  TDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

825) Despr_2224 in NC_014972


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  269 bits (1004),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 187/400 (47%), Positives = 281/400 (71%), Gaps = 10/400 (2%)

Query  37   IGSLCELFPLQDGEVIPAEIVGYSNNRALLMPLGELRGLGPGSRIRVKKEQATISvgdgl  96
            +G LC    ++ GE + AE+VG + ++ALL P+    GL  G ++   + +  ++VG++L
Sbjct  42   MGELC---CIKPGEEL-AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  97   lgrvldgMAQPLD--QGPPLYLPHEKALYSLPPGPMQRDAITQPLDLGIRAINGLLTCGI  154
            LGRV+DG ++PLD  + P +     K   ++PP +M R++ITQPL  GIRAI+++ TCG 
Sbjct  98   LGRVIDGFGRPLDGRELPEVCW---KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGE  154

Query  155  GQRMGIMAGSGVGKSVLLGMMAKYAKADINVIALIGERGREVKEFIERDLGKESLAHSVI  214
            GQR+GI +++GVGKS LL+M+ + + AD NV+ LIGERGREV+EFI+  L+ E+  + VI
Sbjct  155  GQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVI  214

Query  215  VAVTSDQSPLLRMRGAFVATAIAEYFCQRGKNVLLMMDSVTRFAMAMREIGLSIGEPPTT  274
            V  TSD+++L R+R+ FVAT+IAE+F + GK V+L+ DS+TR+A A REI+L+ GE + +
Sbjct  215  VVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVS  274

Query  275  KGYTPSVFATLPKLLERAGNFQHQGSITGLYTVLVDGDDLTEPVADSVRSILDGHIVLSR  334
              Y P+VF++LP+LLER+G   ++GSIT++YTVLV+GDD+ EP+AD VRS+LDGHIVLSR
Sbjct  275  GEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  335  SIAAKNHYPAIDVMMSTSRVMRDITTSRHRELAGKARSVMAIYRESEDLINIGAYATGSN  394
             +A + HYPAIDV+ + SRV   +T+  HR+LA+  R  +A+Y+E E LI IG Y  G +
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  395  KKIDYAISRMDAINAFLTQGFEESSTLEETIAAMGELVSD  434
               D AI     I +FL Q+ +E    E  I  + +++++
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

826) fliI in NC_021716


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  268 bits (1003),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 182/370 (50%), Positives = 266/370 (72%), Gaps = 3/370 (0%)

Query  55   GEIEAEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLD  114
            GE  AEVVG+ +  + L P  +  G+  G +VM+L R+  +PVG +LLGRV+DG G+PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  115  GLGEIDAEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKS  174
            G  E+    +      P  +++R+PI  P+  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  G-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  175  VLLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKG  234
             LL+M+  + +AD  V+ L+GERGREV+EFI+  L+EE R+R V+V A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  235  CETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
               A TIAE+FRD+G +V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  295  ERAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIE  354
            ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR LA+ GHYPAID+ 
Sbjct  290  ERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  ASISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAIN  414
            A++SRV P+V S+EH+ +A  +R+  + Y++ + LI IG Y +G D   D AI + P I 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  ALLQQGMKQV  424
            ++L+Q+  +V
Sbjct  408  TFLRQSKDEV  417

827) DvMF_2290 in NC_011769


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  268 bits (1003),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 177/378 (47%), Positives = 265/378 (71%), Gaps = 6/378 (1%)

Query  89   AEVVGFRDGNLLFMPYGDLRGIRPGSLIRNTSLPPVFPVGDALLGRAFDAFGAPLDSGAH  148
            AEVVG+ +++ L+ P+    G++ G  +         PVG+ALLGR +D+FG PLD  ++
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GR  112

Query  149  VVTTGVAPLYAS-PPNPLARPRISDPLDVGVRVINSLLTLGKGQRVGIMAGSGVGKSTLM  207
             +       Y + PP ++ R  I++PL  G+R I+S+ T G GQRVGI +++GVGKSTL+
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  208  GMMARYTVADVNVIGLIGERGREVVEFMEKDLGPEGMARSVLIVATSDQSPLVRMRaaya  267
            +M+     AD NV+ LIGERGREV EF++  L+ E   R V++VATSD+++L R+RA + 
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  268  atavaEFFRDQGKDVLLMMDSVTRFAMAAREVGLAVGEPPTTKGYTPTVFAQLPKLLERA  327
            AT++AEFFRD+GK V+L+ DS+TR+A AARE++LA GE + +  Y P VF+ LP+LLER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  328  GRSEKGTITGIYTVLVDGDDFNEPIADAVRSILDGHIVLTRDLADMGHFPAIDVLRSISR  387
            G +EKG+IT++YTVLV+GDD NEP+AD VRS+LDGHIVL+R LA+ GH+PAIDVL ++SR
Sbjct  293  GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  388  LRSDICAKNVVDAGRVITRHLATFRKAEDMINIGAYAQGSNPDIDKAIAMNGPINAFLRQ  447
            + + + + +  + + ++ R+LA ++  E +I IG Y +G + D DKAI     I +FLRQ
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  448  ---DVTDAAPLADSFAQL  462
               +V ++  L + + Q+
Sbjct  413  SKDEVCGPELLIEKLHQI  430

828) fliI in NC_021821


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  268 bits (1003),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 166/365 (46%), Positives = 257/365 (71%), Gaps = 3/365 (0%)

Query  66   AQVVGFDHTVAYLMPIRRLGGLFAGAKVIPLDGDSTVQLSSQWMGRVVNGLGEPLDDGMP  125
            A+VVG++ + A L P+   +GL  G +V++L     V ++   +GRV++G+G PLD G  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRE  113

Query  126  LKGGDRVSLEPKPINPLKRRPVDTPLNVGVRAINGLLTVGKGQRIGLMAGSGVGKSVLMG  185
            L    +   ++ P  ++ R+P+  PL  G+RAI+++ T G GQR+G+ +++GVGKS L++
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  186  MITKNTEADVIVVGLIGERGREVREFIERNLTPEAREKAIIIAAPADESPLMRLRATLLC  245
            M+ +  +AD  V+ LIGERGREVREFI+  L+ E+R + +I+ A +D ++L R+RA ++ 
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  246  HRVAEYFRDQGKDVLLLMDSLTRYAMAQREIALSLGEPPASRGYPPSVFSVLPQLLERAG  305
              +AE+FRD+GK V+LL DSLTRYA A REIAL+ GE + S  YPP+VFS LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  306  NSENPHGSLTAIYTVLAEGDDQQDPVVDSARAILDGHVVLSRQLAEQGHYPAIDINASIS  365
             +E+  GS+TA+YTVL EGDD ++P+ D  R++LDGH+VLSR+LAE+GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  366  RCMSTCTQPAHFTIANNFRQMYSNYLQVKELLPLGGYQPGQDPELDQSVSMYPHLRSYLQ  425
            R  +  T   H  +A  +R+  + Y +V  L+ +G YQ G D + D+++  YP++ ++L+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  426  QSANE  430
            QS +E
Sbjct  412  QSKDE  416

829) ECH74115_4146 in NC_011353


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  268 bits (1001),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 180/402 (45%), Positives = 280/402 (70%), Gaps = 12/402 (2%)

Query  14   HSINGSLIEAELDDVSVGEVCEIYASRQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  73
            + ++++L++A L +V +GE+C I    ++ E +A  +VVG+  +K+LL+ + S+ GL   
Sbjct  26   QDVSATLLNAWLPGVFMGELCCI----KPGEELA--EVVGINGSKALLSPFTSTAGLHCG  79

Query  74   AVLKPTGEQLTIQISDAFLGSVLNASGQIME-RFVPDTPGDRGNLRLIDELPPSYQERRV  132
              + +   +  + +++A+LG V+++ G+ ++ R +P+        +  D +PP+   R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-----WKDYDAMPPPAMVRQP  134

Query  133  INTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGR  192
            I  PL T IR ID+V TCG GQRVGIF+++G GK+ L+ ML N  +AD  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  193  EVTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSM  252
            EV E  +         +CV+V ATSD ++++R  A ++ATT+AE+FRD GKRVVL+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  253  TRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITEFYTVLLEGEDES  312
            TRYARA R++ LAAGE +    YP++VF +LPRLLER G   KGSIT FYTVL+EG+D +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  313  DPLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKNLT  372
            +PL+DE+RS+LDGHI LSR+LA +GHYPAIDVL ++SRVF  VT + HR+ AA +R+ L+
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  373  TLEDLQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNE  414
              ++++++I +GEY+ G +++ D A+++ P +   L+QS +E
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

830) Anamo_0264 in NC_018024


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  268 bits (1001),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 190/394 (49%), Positives = 285/394 (73%), Gaps = 7/394 (1%)

Query  27   GLIAKAIGIVIESKGPDVRVGDLCEIRYRDKSMSLPAEVVGFSENRVLLMPLGELTDIGP  86
            G I    + ++++  P+V +G+LC I+  +  +   AEVVG++ ++ LL P+   +++  
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL---AEVVGINGSKALLSPFTSTAGLHC  78

Query  87   GCDVVAVGQKlgvrvgpgllgrvlnglgEPIDDKG-PIIAGEVYPLYAKPPHPLLRKPVA  145
            G +V+A+ ++  V VG +LLGRV++G+G P+D++  P +    Y   A PP +++R+P++
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPIT  136

Query  146  TPLPVGVKAIDALLTLGRGQRVGIFSGSGVGKSTLMGMMVRNTEAEISVIGLIGERGREV  205
             PL  G++AID++ T G GQRVGIFS++GVGKSTL++M+    +A+ +V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  206  GEFLERDLGSSGLKRSVVVVATSDQPPLIRLKAALTATAIAEYFRDRGKDVLLLMDSVTR  265
             EF++  L+    KR V+VVATSD+P+L R++A + AT+IAE+FRD GK V+LL DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  266  VAMAQRDVGLAIGEPPATRGYTPSVFAFLPKLLERAGAGERGSITGVYNVLVEGDDMNEP  325
             A A R+++LA GE + +  Y P+VF+ LP+LLER+G GE+GSIT+ Y VLVEGDDMNEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  326  VADTVRGILDGHIVLSRKLASKGHYPAIDVLRSVSRVMPNITSQEHLEAARRVRELLAIY  385
            +AD VR++LDGHIVLSR+LA +GHYPAIDVL ++SRV P +TS+EH + A  +R  LA+Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  386  EDAEDLVNIGAYKEGSNINIDWALRYLDDVLDFL  419
            ++ E L+ IG Y+ G + + D A+    D+  FL
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

831) Hneap_0436 in NC_013422


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  268 bits (1001),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 172/365 (48%), Positives = 261/365 (72%), Gaps = 3/365 (0%)

Query  82   AEVVGFAERNTYLMPLEALRGIAPGCRVQNQGASIRMPLGPELLGRVLDARGQPLDDGPA  141
            AEVVG+   ++ L P+ +  G+  G +V       ++P+G  LLGRV+D+ G+PLD G  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRE  113

Query  142  IFGDIPVDLQGRSNNPLKRRPIREPLDVGVRAINALLTVGRGQRMGIFAGSGVGKSVLLG  201
            +      D ++ +  ++ R+PI +PL  G+RAI+++ T G GQR+GIF+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  202  MMTRYTTAEIIVVGLIGERGREVREFVAEILDDEARSRAIVIAAPADASPLMRLHGASLA  261
            M+     A+  V+ LIGERGREVREF+   L +E+R R +++ A +D ++L R+++  +A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  262  TAIAEYFREQGHDVLLLMDSLTRYAQAQREIGLAIGEPPATKGYPPSVFARLPALVERAG  321
            T+IAE+FR++G  V+LL DSLTRYA+A REI+LA GE + +  YPP+VF+ LP L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  322  NGESARGSMTAFYTVLVEGDDQNDPIADAARAILDGHIVLSRAIAERGRYPAIDIEASIS  381
             GE  +GS+TAFYTVLVEGDD N+P+AD  R++LDGHIVLSR +AERG+YPAID+ A++S
Sbjct  294  MGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  382  RLMPALVSPEHLDLMQRFKQLMSTYNQSRDLLAVGAYRRGHDVRLDRAIDAQPDLEAFIS  441
            R+ P + S EH +L   +++ ++ Y++   L+ +G Y+RG D   D+AID+ PD+ +F+ 
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  442  QSIHE  446
            QS +E
Sbjct  412  QSKDE  416

832) Dsui_1753 in NC_016616


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  268 bits (1001),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 182/401 (46%), Positives = 263/401 (66%), Gaps = 23/401 (5%)

Query  68   AEVVGFNGEKLFLMPSDDVYGLSPGAAVVALETpsppplvgkpppFRRRSVDKAKLVPVG  127
            AEVVG+NG K +L P     GL  G  V+AL               RRR       VPVG
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMAL---------------RRR-----HQVPVG  94

Query  128  MGLLGRVVDGAGRPLDGLGPLHAEALRPLHSRPVNPMSRAPISRTLDVGVRAINGLLTVG  187
             +LLGRV+DG GRPLDG   L     +  ++ P  +M R PI++ L  G+RAI+++ T G
Sbjct  95   EALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCG  153

Query  188  QGQRMGLFAGSGVGKSVLLGMMARYTEAEIIVVGLIGERGREVKEFIEQILGEEGRRRSA  247
            +GQR+G+F+++GVGKS LL+M+    +A+  V+ LIGERGREV+EFI+  L+EE R+R  
Sbjct  154  EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCV  213

Query  248  VIAAPADTSPLMRLQGAAYATSVAEYFRDQGKQVLLIMDSLTRYAMAQREIALAIGEPPV  307
            ++ A +D ++L R+++   AT++AE+FRD+GK+V+L+ DSLTRYA A REIALA GE +V
Sbjct  214  IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAV  273

Query  308  TRGYPPSVFARLPQLVERAGNGPDGGGSITAFYTVLAEGDDQQDPIADSARAILDGHIVL  367
            +  YPP+VF+ LP+L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVL
Sbjct  274  SGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  368  NRQLADAGHYPAIDIEQSISRAMVNLITPAQFDLVRRFKQLYSRYQRSRDLIAVGAYVAG  427
            +R+LA+ GHYPAID+  ++SR    + +  + +L   +++  + YQ    LI +G Y  G
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRG  391

Query  428  SDPMVDQAIQLMPLLEKFLQQDLSDRSSIEATLAMLQQIFP  468
             D   D+AI+  P +  FL+Q   +  + E  +  L+QI+ 
Sbjct  392  VDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

833) swp_5095 in NC_011566


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  268 bits (1001),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 185/419 (45%), Positives = 290/419 (70%), Gaps = 12/419 (2%)

Query  20   GRLTRVNGLLLEAVGCQLGTGDRCYIECRDQHRVEAEVVGFYRDTLCLMPIEPTDGLMPG  79
            GR+  V++ LL+A    +  G+ C I   ++    AEVVG+      L P+ +T GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  80   ARVMPIEGRYQIPSGQGLLGRVLNGLGQPLDDLGCIKHMPHVPL-QFKTTNP--LLRKPI  136
             +VM++  R Q+P G++LLGRV++G+G+PLD+    +++P+V   ++ +  P  ++R+PI
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG----RELPEVCWKDYDAMPPPAMVRQPI  135

Query  137  KEPLDVGIRAINALLPVGRGQRLGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGRE  196
             +PL  GIRAI+++   G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  197  VREFIDESLGEEGRKRavvvaaPADTTPLMRMRAMRLCHQIAAAYRDQGKQVLLLVDSLT  256
            VREFID +L+EE RKR V+V A +D  +L R+RA+ +   IA  +RD+GK+V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  257  RYAQAQREIALSLGEPPATKGYPPSAFAQLPSLVEMAGNSQHPTGTLTAFYTVLTEGDDQ  316
            RYA+A REIAL+ GE + +  YPP+ F+ LP L+E +G ++   G++TAFYTVL EGDD 
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDM  313

Query  317  QDPIADSARAILDGHIVLSRKLAEQGHFPAIDIAASVSRLATQVANEETLRQGQWFRHIN  376
            ++P+AD  R++LDGHIVLSR+LAE+GH+PAID+ A++SR+   V+++E  + +  +R+  
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  377  SRYNEIRDLLPLGGYQAGHDPEMDLSVSAYPHMATFLKQPITVAADHAHSIDALTQLVN  435
            + Y+E+  L+ +G YQ G D + D ++ +YP++ TFL+Q+     +    I+ L Q++ 
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

834) Tlie_0077 in NC_016148


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (997),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 196/401 (49%), Positives = 286/401 (72%), Gaps = 8/401 (1%)

Query  26   GKVTNVTGIIVESIGPDVQLGDVCEIRFRKPNQQPLKCEVVGFREERILLMPLGDLGKIG  85
            G++ +V++ ++++  P+V +G++C I   KP ++    EVVG+   + LL P+   + + 
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELA--EVVGINGSKALLSPFTSTAGLH  77

Query  86   PGCSVSATgrpmgvpvgggllgrvlnglgEPLDDKG-PINCTEYYPLQNDPPHPLKRKPV  144
             G  V A  R   VPVG +LLGRV++G+G PLD++  P  C   Y  +  PP ++ R+P+
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPI  135

Query  145  KDVLSVGIRAIDGLLTMGRGQRIGIFSGSGVGKSTILGMMARYTEADVNVIVLVGERGRE  204
             + L  GIRAID++ T G GQR+GIFS++GVGKST+L+M+    +AD NV+VL+GERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  205  VQEFLNRDLKEEGMRRSVVVVATSDQPPLVRLKAALTGTAIAEYFRDRGKSVLLMMDSIT  264
            V+EF++  L EE  +R V+VVATSD+P+L R++A + +T+IAE+FRD GK V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  265  RVAMAQRDVGLAVGEPPVTRGYTPSVFTFLPRLLERAGCSASGSITGIYTVLVEGDDFNE  324
            R A A R+++LA GE +V+  Y P+VF+ LPRLLER+G +  GSIT++YTVLVEGDD NE
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  325  PIADAVRGILDGHIVLSRDLAVKNHYPAIDVLHSISRLMKDITSTEQQEAARSLRENLSL  384
            P+AD VR++LDGHIVLSR LA + HYPAIDVL ++SR+   +TS E+++ A  LR  L+L
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  385  YQEAEELINLGAYKKGSNPRLDFAVENKDKFDKFLRQGIDE  425
            YQE E LI +G Y++G +   D A++    +  FLRQ+ DE
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

835) Galf_1066 in NC_014394


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (997),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 186/402 (47%), Positives = 262/402 (66%), Gaps = 26/402 (6%)

Query  82   VGSTCQIRLPNTTVEAEVVGFSGEKLFLMPENDVYGLVPGARVMPITPLHTLSLAGKRKP  141
            +G  C I+ P   + AEVVG++G K +L P     GL  G +VM+               
Sbjct  42   MGELCCIK-PGEEL-AEVVGINGSKALLSPFTSTAGLHCGQQVMA---------------  84

Query  142  LRRRMSDHAKHLPVGNMLLGRVLDGAGKPLDQLGPLLETASAPLQSRPFNPLERASIDTP  201
            LRRR      ++PVG+ LLGRV+DG G+PLD    L E      ++ P  ++ R +I  P
Sbjct  85   LRRR-----HQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  202  LDVGVRAINALLSVGRGQRMGLFAGSGVGKSVLLGMMARYTSADVTVVGLIGERGREVKE  261
            L  G+RAI+++ + G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  262  FINDILGPEGMARSVVVATPADTSPLMRLQGTAYATTIAEYFRDQGKNVLLIMDSLTRFA  321
            FI+  L+ E   R V+V + +D ++L R+++   ATTIAE+FRD+GK V+L+ DSLTR+A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  322  MAQREIALAVGEPPATKGYPPSVFAKLPQLVERAGNGLEGGGSITAFYTVLTEGDDQQDP  381
             A REIALA GE + +  YPP+VF+ LP+L+ER+G G    GSITAFYTVL EGDD ++P
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEP  316

Query  382  IADSARAILDGHIVLSRRLVEQGHYPAIDIEASISRVMSRLATPEHAALVQRFKQLYAHY  441
            +AD  R++LDGHIVLSRRL E+GHYPAID+ A++SRV + +++ EH  L   +++  A Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  442  QRNRDLISVGAYINGSDPLLDEAIKLYPKMEQFLKQGMHQ-C  482
            Q    LI +G Y  G D   D AI  YP +  FL+Q+ ++ C
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

836) EC042_3069 in NC_017626


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (998),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 182/402 (46%), Positives = 280/402 (70%), Gaps = 12/402 (2%)

Query  23   HSINGSLIEAELDDVSVGEVCEIYASWQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  82
            + ++++L++A L +V +GE+C I    ++ E +A  +VVG+  +K+LL+ + S+ GL   
Sbjct  26   QDVSATLLNAWLPGVFMGELCCI----KPGEELA--EVVGINGSKALLSPFTSTAGLHCG  79

Query  83   AVLKPTGEQLTIQINDAFLGSVLNASGQIME-RFVPDTPGERGNLRLIDELPPSYKERRV  141
              + +   +  + + +A+LG V+++ G+ ++ R +P+        +  D +PP+   R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-----WKDYDAMPPPAMVRQP  134

Query  142  INTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGR  201
            I  PL T IR ID+V TCG GQRVGIF+++G GK+ L+ ML N  +AD  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  202  EVTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSM  261
            EV E  +         +CV+V ATSD ++++R  A ++ATT+AE+FRD GKRVVL+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  262  TRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITAFYTVLLEGEDES  321
            TRYARA R++ LAAGE +    YP++VF +LPRLLER G   KGSITAFYTVL+EG+D +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  322  DPLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKILT  381
            +PL+DE+RS+LDGHI LSR+LA +GHYPAIDVL ++SRVF  VT + HR+ AA +R+ L+
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  382  TLEELQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNE  423
              +E++++I +GEY+ G +++ D A+++ P +   L+QS +E
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

837) eivC in NC_017646


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (997),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 181/402 (46%), Positives = 281/402 (70%), Gaps = 12/402 (2%)

Query  23   HSINGSLIEAELDDVSVGEVCEIYASWQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  82
            + ++++L++A L +V +GE+C I    ++ E +A  +VVG+  +K+LL+ + S+ GL   
Sbjct  26   QDVSATLLNAWLPGVFMGELCCI----KPGEELA--EVVGINGSKALLSPFTSTAGLHCG  79

Query  83   AVLKPTGEQLTIQISDAFLGSVLNASGQIME-RFVPDTPGERGNLRLIDELPPSYQERRV  141
              + +   +  + +++A+LG V+++ G+ ++ R +P+        +  D +PP+   R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-----WKDYDAMPPPAMVRQP  134

Query  142  INTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGR  201
            I  PL T IR ID+V TCG GQRVGIF+++G GK+ L+ ML N  +AD  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  202  EVTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSM  261
            EV E  +         +CV+V ATSD ++++R  A ++ATT+AE+FRD GKRVVL+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  262  TRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITAFYTVLLEGEDES  321
            TRYARA R++ LAAGE +    YP++VF +LPRLLER G   KGSITAFYTVL+EG+D +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  322  DPLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKILT  381
            +PL+DE+RS+LDGHI LSR+LA +GHYPAIDVL ++SRVF  VT + HR+ AA +R+ L+
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  382  TLEDLQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNE  423
              ++++++I +GEY+ G +++ D A+++ P +   L+QS +E
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

838) ECUMN_3201 in NC_011751


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (997),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 181/402 (46%), Positives = 281/402 (70%), Gaps = 12/402 (2%)

Query  23   HSINGSLIEAELDDVSVGEVCEIYASWQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  82
            + ++++L++A L +V +GE+C I    ++ E +A  +VVG+  +K+LL+ + S+ GL   
Sbjct  26   QDVSATLLNAWLPGVFMGELCCI----KPGEELA--EVVGINGSKALLSPFTSTAGLHCG  79

Query  83   AVLKPTGEQLTIQISDAFLGSVLNASGQIME-RFVPDTPGERGNLRLIDELPPSYQERRV  141
              + +   +  + +++A+LG V+++ G+ ++ R +P+        +  D +PP+   R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-----WKDYDAMPPPAMVRQP  134

Query  142  INTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGR  201
            I  PL T IR ID+V TCG GQRVGIF+++G GK+ L+ ML N  +AD  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  202  EVTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSM  261
            EV E  +         +CV+V ATSD ++++R  A ++ATT+AE+FRD GKRVVL+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  262  TRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITAFYTVLLEGEDES  321
            TRYARA R++ LAAGE +    YP++VF +LPRLLER G   KGSITAFYTVL+EG+D +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  322  DPLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKILT  381
            +PL+DE+RS+LDGHI LSR+LA +GHYPAIDVL ++SRVF  VT + HR+ AA +R+ L+
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  382  TLEDLQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNE  423
              ++++++I +GEY+ G +++ D A+++ P +   L+QS +E
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

839) vfu_A01193 in NC_016602


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (999),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 177/398 (45%), Positives = 274/398 (69%), Gaps = 9/398 (2%)

Query  43   IGSLCKVQTMSGEMEAEVVGFSGDSLFLMPSEQITGVLPGAKVTPLTEEAGLSVGMELLG  102
            +G LC ++  +GE  AEVVG++G   +L P    +G+  G +V +L     ++VG  LLG
Sbjct  42   MGELCCIK--PGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTDQRASFNAQPINPLARKPISEPLDVGIKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +  ++A P  ++ R+PI++PL  GI+AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGVDGRQRsvvva  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+ + R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  apadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGAYKPGTDQ  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDSAFTLKPKLDNYLQQGMKDSVPYEMCVSMLKNVLS  438
              D A+   P +  +L+Q+  +    E+ +  L ++L+
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

840) LFML04_0230 in NC_018649


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (997),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 176/405 (44%), Positives = 281/405 (70%), Gaps = 6/405 (1%)

Query  30   EPFSREGAVVEGIGLMIEARGIELGIGEICSIGSDPPVAAEVVGFREGRSLLMPLGELRG  89
            + + R G + +  + +++A+   + +GE+C I ++  +A EVVG+  +++LL P+    G
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA-EVVGINGSKALLSPFTSTAG  75

Query  90   IRPGLSVACREKRPQAWVSEQFLGRVLDPMGHALDGGADPEGAVPVPLYGE-PVNPLVRR  148
            ++ G  V    +R Q  V+E +LGRV+D  G++LDG   PE  V    Y+  P  ++VR+
Sbjct  76   LHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE--VCWKDYDAMPPPAMVRQ  133

Query  149  RVDSVLDTRVRALNALLTLGQGQKVGLFAGAGVGKSTLLGMMAREADVDVSVVALIGERG  208
             +   L T +RA++++ T G+GQ+VG+F+++GVGKSTLL+M+   +D D +V+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  209  REVREFLERDLGEEGLSRSVVVVSTGDQPSLLRVRGALFAMSVAEYFRKQNRSVLFVMDS  268
            REVREF++  L+EE   R V+VV+T+D+P+L RVR+ + A ++AE+FR + + V+++ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  269  LTRFAMALREIGLATGEPPTARGYTPSVFAQLPRFVERAGGIEGEGSITGLYTVLVEGAD  328
            LTR+A A REI+LA+GE + +  Y P+VF+ LPR++ER+ G+   GSIT++YTVLVEG D
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT-GMGEKGSITAFYTVLVEGDD  312

Query  329  MTSDPLSDALAAILDGHILLSRDLAAEGIYPSVDLLHSRSRVMPVIADPHHRALAATFLR  388
            M ++PL+D + ++LDGHI+LSR LA  G YP++D+L + SRV PV++  +HR LAA + R
Sbjct  313  M-NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  389  YESLYRKSEDLIRVGAYVPGMDPELDQAVSLHPRMMEFLSQPAGE  433
              +LY+  E LIR+G Y  G+D + D+A+   P +  FL Q+ +E
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

841) fliI in NC_007925


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (999),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 167/381 (44%), Positives = 261/381 (69%), Gaps = 3/381 (0%)

Query  56   EVIGFNGNNAVVMPFAGLEGVRRGCRAVIANAAAQVRPSPSWLGRVLNAMGEPIDGKGPL  115
            EV+G+NG++A++ PF++  G++ G + +      QV  + + LGRV+++ G P+DG+   
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE--  113

Query  116  TQGTSPMTFRNAPPPAHSRKRVGAPLDLGVRALNTFLTCCRGQRLGIFAGSGVGKSVLLS  175
                    +   PPPA  R+ +  PL  G+RA+++  TC  GQR+GIF+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  176  MLARNVDADVSVIGLVGERGREVQEFLQDDLGDEGMARSVVVVATSDEPALMRRQAAYLT  235
            ML    DAD +V+ L+GERGREV+EF++  L++E   R V+VVATSD PAL R +A +++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  236  LAISEYFRDDGKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAG  295
             +I+E+FRD+GK V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  296  PGLNEGTITGIFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINILKSVSR  355
             G + G+IT+++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG+YPAI++L ++SR
Sbjct  294  MG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  356  TMPKSADPAYLPIIRRARQIMGTYADMEELIRLGAYRAGSSPEVDEAIRLHQPLEDFLRQ  415
              P  +      +    R+ ++ Y ++E LIR+G Y+ G   + D AI     +  FLRQ
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  416  GKEEATALQAGYAQLEQIVSN  436
            +K+E  + +    +L+QI+++
Sbjct  413  SKDEVCGPELLIEKLHQILTE  433

842) lgiI in NC_011751


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (997),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 175/411 (43%), Positives = 272/411 (67%), Gaps = 5/411 (1%)

Query  24   GRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAG  83
            GR+  +++ LL++    +  G+LC I ++++    A+ VG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  84   ARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDllpplppSVNPLTRRSVDEP  143
             +V +  + H++ +GE+ LGRV++G+G PLDG+  L         + +  ++ R+++ +P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  144  LDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKE  203
            L  G++AI+++ T G GQRVG+ +++GVGKS LL+M+     AD  V+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  204  FIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYA  263
            FID +L+ +   + ++VVA +D ++L R++A  +  +IA  FRD G +V+LL DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  264  MAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPI  323
             A REIAL+ GE + +  YPP+ F+ +P+L+E +G +E  GS+TA+YTVL EGDD ++P+
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDDMNEPL  317

Query  324  VDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLDHQQSARALKQNYAAYM  383
             D  R++LDGHIVL+R+LAE GHYPAID+  ++SR    VTS +H+Q A  L++  A Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  384  EIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQDMREPAALELVQSRLQ  434
            E+  LI +G Y  G D+  DKA+  +P I  FLRQ   E  + EL+  +L+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

843) Z4194 in NC_002655


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (1000),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 180/402 (45%), Positives = 280/402 (70%), Gaps = 12/402 (2%)

Query  23   HSINGSLIEAELDDVSVGEVCEIYASRQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  82
            + ++++L++A L +V +GE+C I    ++ E +A  +VVG+  +K+LL+ + S+ GL   
Sbjct  26   QDVSATLLNAWLPGVFMGELCCI----KPGEELA--EVVGINGSKALLSPFTSTAGLHCG  79

Query  83   AVLKPTGEQLTIQISDAFLGSVLNASGQIME-RFVPDTPGDRGNLRLIDELPPSYQERRV  141
              + +   +  + +++A+LG V+++ G+ ++ R +P+        +  D +PP+   R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-----WKDYDAMPPPAMVRQP  134

Query  142  INTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGR  201
            I  PL T IR ID+V TCG GQRVGIF+++G GK+ L+ ML N  +AD  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  202  EVTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSM  261
            EV E  +         +CV+V ATSD ++++R  A ++ATT+AE+FRD GKRVVL+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  262  TRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITEFYTVLLEGEDES  321
            TRYARA R++ LAAGE +    YP++VF +LPRLLER G   KGSIT FYTVL+EG+D +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  322  DPLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKNLT  381
            +PL+DE+RS+LDGHI LSR+LA +GHYPAIDVL ++SRVF  VT + HR+ AA +R+ L+
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  382  TLEDLQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNE  423
              ++++++I +GEY+ G +++ D A+++ P +   L+QS +E
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

844) ECs3730 in NC_002695


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (1000),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 180/402 (45%), Positives = 280/402 (70%), Gaps = 12/402 (2%)

Query  23   HSINGSLIEAELDDVSVGEVCEIYASRQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  82
            + ++++L++A L +V +GE+C I    ++ E +A  +VVG+  +K+LL+ + S+ GL   
Sbjct  26   QDVSATLLNAWLPGVFMGELCCI----KPGEELA--EVVGINGSKALLSPFTSTAGLHCG  79

Query  83   AVLKPTGEQLTIQISDAFLGSVLNASGQIME-RFVPDTPGDRGNLRLIDELPPSYQERRV  141
              + +   +  + +++A+LG V+++ G+ ++ R +P+        +  D +PP+   R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-----WKDYDAMPPPAMVRQP  134

Query  142  INTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGR  201
            I  PL T IR ID+V TCG GQRVGIF+++G GK+ L+ ML N  +AD  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  202  EVTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSM  261
            EV E  +         +CV+V ATSD ++++R  A ++ATT+AE+FRD GKRVVL+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  262  TRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITEFYTVLLEGEDES  321
            TRYARA R++ LAAGE +    YP++VF +LPRLLER G   KGSIT FYTVL+EG+D +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  322  DPLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKNLT  381
            +PL+DE+RS+LDGHI LSR+LA +GHYPAIDVL ++SRVF  VT + HR+ AA +R+ L+
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  382  TLEDLQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNE  423
              ++++++I +GEY+ G +++ D A+++ P +   L+QS +E
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

845) eivC in NC_013008


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (1000),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 180/402 (45%), Positives = 280/402 (70%), Gaps = 12/402 (2%)

Query  23   HSINGSLIEAELDDVSVGEVCEIYASRQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  82
            + ++++L++A L +V +GE+C I    ++ E +A  +VVG+  +K+LL+ + S+ GL   
Sbjct  26   QDVSATLLNAWLPGVFMGELCCI----KPGEELA--EVVGINGSKALLSPFTSTAGLHCG  79

Query  83   AVLKPTGEQLTIQISDAFLGSVLNASGQIME-RFVPDTPGDRGNLRLIDELPPSYQERRV  141
              + +   +  + +++A+LG V+++ G+ ++ R +P+        +  D +PP+   R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-----WKDYDAMPPPAMVRQP  134

Query  142  INTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGR  201
            I  PL T IR ID+V TCG GQRVGIF+++G GK+ L+ ML N  +AD  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  202  EVTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSM  261
            EV E  +         +CV+V ATSD ++++R  A ++ATT+AE+FRD GKRVVL+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  262  TRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITEFYTVLLEGEDES  321
            TRYARA R++ LAAGE +    YP++VF +LPRLLER G   KGSIT FYTVL+EG+D +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  322  DPLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKNLT  381
            +PL+DE+RS+LDGHI LSR+LA +GHYPAIDVL ++SRVF  VT + HR+ AA +R+ L+
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  382  TLEDLQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNE  423
              ++++++I +GEY+ G +++ D A+++ P +   L+QS +E
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

846) CDCO157_3483 in NC_017906


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (1000),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 180/402 (45%), Positives = 280/402 (70%), Gaps = 12/402 (2%)

Query  23   HSINGSLIEAELDDVSVGEVCEIYASRQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  82
            + ++++L++A L +V +GE+C I    ++ E +A  +VVG+  +K+LL+ + S+ GL   
Sbjct  26   QDVSATLLNAWLPGVFMGELCCI----KPGEELA--EVVGINGSKALLSPFTSTAGLHCG  79

Query  83   AVLKPTGEQLTIQISDAFLGSVLNASGQIME-RFVPDTPGDRGNLRLIDELPPSYQERRV  141
              + +   +  + +++A+LG V+++ G+ ++ R +P+        +  D +PP+   R+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-----WKDYDAMPPPAMVRQP  134

Query  142  INTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGR  201
            I  PL T IR ID+V TCG GQRVGIF+++G GK+ L+ ML N  +AD  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  202  EVTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSM  261
            EV E  +         +CV+V ATSD ++++R  A ++ATT+AE+FRD GKRVVL+ DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  262  TRYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITEFYTVLLEGEDES  321
            TRYARA R++ LAAGE +    YP++VF +LPRLLER G   KGSIT FYTVL+EG+D +
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  322  DPLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKNLT  381
            +PL+DE+RS+LDGHI LSR+LA +GHYPAIDVL ++SRVF  VT + HR+ AA +R+ L+
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  382  TLEDLQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNE  423
              ++++++I +GEY+ G +++ D A+++ P +   L+QS +E
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

847) fliI in NC_018870


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (1000),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 181/418 (44%), Positives = 282/418 (68%), Gaps = 6/418 (1%)

Query  9    CR-GRIEQIVGLTIEGRGPRGNIGELCFIAAPEGRIKAEIVGFRGEHTILMPLGEMGRVG  67
            CR GRI+++ +  ++++ P   +GELC I + E    AE+VG+ G  ++L P+   + + 
Sbjct  20   CRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE--LAEVVGINGSKALLSPFTSTAGLH  77

Query  68   PGCEIVASGDLFKIGVGPGLKgrvldglgrpldglppvvAERWIPVTAVARNPLERERIR  127
             G +++A     ++ VG +L    + +      +   +    W    A++  ++ R+ I 
Sbjct  78   CGQQVMALRRRHQVPVGEAL-LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPIT  136

Query  128  EALPLGIKAIDGLLTCGKGQRLGIFAGSGVGKSVLLGMIARNTEADVNVIALIGERGREV  187
            ++L  GI+AID++ TCG GQR+GIF+++GVGKS LL+M+    +AD NV+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  188  RDFIERDLGSEGLQRSVVVAATSDQPALVRIKGALVATAIAEYFRDEGQDVLLMMDSVTR  247
            R+FI+  L+ E  +R V+V ATSD+PAL R+++ +VAT+IAE+FRD+G+ V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  248  FAMAQREVGLAVGEPPATRGYTPSVFALLPKLLERAGTSRKGTITGLYSVLVDGDDLNEP  307
            +A A RE++LA GE + +  Y P+VF+ LP+LLER+G + KG+IT++Y+VLV+GDD+NEP
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  308  IADAVRGTLDGHIVLSRELAAQNHYPAIDVLNSVSRVMIDIVSPQHLSSAAAMRNILATY  367
            +AD VR+ LDGHIVLSR LA + HYPAIDVL ++SRV   + S +H   AA +R  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  368  REARDIIEIGAYKSGTNPKIDEAIRMW-DRCLSFLRQGVQERYDYQDVVAQLTELFPE  424
            +E   +I IG Y+ G +   D AI    D C +FLRQ+ +E  + + ++ +L +++ E
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDIC-TFLRQSKDEVCGPELLIEKLHQILTE  433

848) Dbac_3032 in NC_013173


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (1000),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 188/438 (43%), Positives = 289/438 (66%), Gaps = 11/438 (2%)

Query  1    MTADLDGTLHLLAGLQPAQAY---GKVTKVVGLVAEGRGIKAPLGSVCQLLPDDTGKQVI  57
            M  +L   L+L     P+++Y   G++  V + + +++     +G +C + P++      
Sbjct  1    MKNELMQRLRL--KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----  53

Query  58   NAEVVGFRDDVMLLMPYGEMRGIRPGSLIRNTSTPPVFPVGNRYLGQAVDAFGQSLDPEK  117
             AEVVG+ +   LL P+    G++ G  +         PVG+  LG+ +D+FG++LD  +
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GR  112

Query  118  SIFPARYNPLHADPPNPLTRPRITEPLDVGVRAVNGLLTLGKGQRVGIMAGSGVGKSTLM  177
             +     +  +A PP ++ R  IT+PL  G+RA++++ T G GQRVGI +++GVGKSTL+
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  178  GMFARYTSAEVNVIGLIGERGREVVDFIEKDLGPEGLAKSVLIVATSDQGPLVrmraaya  237
            +M+     A+ NV+ LIGERGREV +FI+  L+ E   + V++VATSD+ +L R+RA + 
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  238  atamaEFFRDEGKDVLLMMDSVTRFAMAAREVGLAAGEPPTTRGYTPTVFSHLPRLLERA  297
            AT++AEFFRD+GK V+L+ DS+TR+A AARE++LAAGE + +  Y P VFS LPRLLER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  298  GRSSKGSITGIYTVLVEGDDFNEPVADAVRSILDGHIVLTRDLADQGHYPSIDVLKSVSR  357
            G + KGSIT++YTVLVEGDD NEP+AD VRS+LDGHIVL+R LA++GHYP+IDVL ++SR
Sbjct  293  GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  358  LAPDVTPAPVIAAGRDLIRMMATFQRVEDMVNIGAYAAGSNPEIDQALNMVHPIRAFLQQ  417
            + P VT+      +  L R +A +Q VE ++ IG Y  G + + D+A++    I +FL+Q
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  418  SVEERSTLDQAFEDLKKL  435
            S +E    +  +E L ++
Sbjct  413  SKDEVCGPELLIEKLHQI  430

849) fliI in NC_010694


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (999),  Expect = 9e-73, Method: Compositional matrix adjust.
 Identities = 190/409 (47%), Positives = 267/409 (66%), Gaps = 15/409 (3%)

Query  26   RYGRLVRATGLVLEATGLQLPLGATCVIERHDNQGIGEVDSEVVGFNGQKLLLMPLEEVE  85
            R GR+   ++ +L+A    + +G  C I        GE  +EVVG+NG K LL P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKP------GEELAEVVGINGSKALLSPFTSTA  74

Query  86   GIVPGARVYARVSGDSQHSGKQLMLGPELLGRVLDGSGRPLDGLPAPETGYRAPLITPPF  145
            G+  G +V A       +   Q+ +G  LLGRV+DG GRPLDG   PE   +     PP 
Sbjct  75   GLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP-  127

Query  146  NPLQRTPITDVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVG  205
             ++ R PIT+ L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  206  LIGERGREVKDFIENILGSEGRARSVVIAAPADVSPLLRMQGASYATRIAEDFRDRGQHV  265
            LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  266  LLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIDGGGSITAFYT  325
            +L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYT
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYT  305

Query  326  VLTEGDDQQDPIADSARAILDGHIVLSRRLAESGHYPAIDIEASISRVMAHLIDDTHYAR  385
            VL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SRV + +  + H   
Sbjct  306  VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL  365

Query  386  VRQFKQLLSSYQRNRDLVSVGAYAAGTDPTLDKAIKLYPELEAFLQQGM  434
               +++ L+ YQ    L+ +G Y  G D   DKAI  YP++ +FL+Q+ 
Sbjct  366  AAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

850) Csal_1958 in NC_007963


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  267 bits (1000),  Expect = 9e-73, Method: Compositional matrix adjust.
 Identities = 178/389 (46%), Positives = 265/389 (69%), Gaps = 10/389 (2%)

Query  78   AEVVGFAGDRLFLMPLGDTHGLVPGARVLTLGNNRQDAASARRFPLGDALLGRVLDGNGR  137
            AEVVG+ G + +L P+  T GL  G +V++L   R++       P+G+ALLGRV+DG GR
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMAL-RRRHQV------PVGEALLGRVIDGFGR  107

Query  138  PLDGKGALDHASHAPLSTAPINPLDRAPIDNVIDVGIRAINGLLSVGRGQRMGLFAGSGV  197
            PLDG+  L +       + P  ++ R PI + +  GIRAI+++ + G GQR+G+F+++GV
Sbjct  108  PLDGR-ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGV  166

Query  198  GKSVLLGMMSRYTQADVIVVGLIGERGREVKDFIENILGPEGRERavvvaapadvSPLQR  257
            GKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E R R V+V A +D ++L+R
Sbjct  167  GKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALER  226

Query  258  LQGASYATRIAEGFRDEGRNVLLIMDSLTRYAMAMREIALAVGEPPATKGYPPSVFARLP  317
            +++   AT IAE FRD+G+ V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP
Sbjct  227  VRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALP  286

Query  318  GLVERAGNGRPGGGSITAFYTVLTEGDDQQDPIADAARAILDGHVVLSRQLAESGHYPAI  377
             L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR+LAE GHYPAI
Sbjct  287  RLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI  344

Query  378  DIEASISRAMTAIVEGDHQRRAQRFKQLFSRYQRNRDLISVGAYAAGHDPQLDRAVALYP  437
            D+ A++SR    +   +H++ A  +++ ++ YQ    LI +G Y  G D + D+A+  YP
Sbjct  345  DVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  438  RLEAFLQQGIDERADVDSTLDALASLFPE  466
             + +FL+Q+ DE  + +  ++ L  ++ E
Sbjct  405  DICTFLRQSKDEVCGPELLIEKLHQILTE  433

851) Noc_2356 in NC_007484


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (995),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 186/394 (48%), Positives = 276/394 (71%), Gaps = 6/394 (1%)

Query  57   VGGRCHILRQERLPVEAEVVGFAGERLFLMPIGDPRGLVPNAPVIPLRHGGRMAVGEAll  116
            +G  C I   E L   AEVVG+ G + +L P+    GL     V++LR+  +++VGEALL
Sbjct  42   MGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  117  grvldgggrplddlgplrATHRVSLEGQPINPLARQPIREPMDVGVAAINALLTIGRGQR  176
            GRV+DG GRPLD+        +   ++ P  ++ RQPI +P+  G+ AI+++ T G GQR
Sbjct  99   GRVIDGFGRPLDGRELPEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  177  MGLFAGSGVGKSVLLGMMTRYAKADVIVVGLIGERGREVQEFIENILGKEGLARSVVVAT  236
            +G+F+++GVGKS LL+M+   + AD  V+ LIGERGREV+EFI+  L+ E   R V+V +
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  237  PADHSPLMRIHGAMLATSIAEYFRDQGKQVLLLMDSLTRFGHAQRELALAIGEPPATRGY  296
             +D+++L R+++  +AT+IAE+FRD+GK+V+LL DSLTR+++A RE+ALA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  297  PPSVFAKIPQLLERAGNGRSGSGSITAFYTVLTEGDDPNDPVADSARAILDGHIVLSRRL  356
            PP+VF+ +P+LLER+G G    GSITAFYTVL EGDD N+P+AD  R++LDGHIVLSRRL
Sbjct  278  PPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  357  AEAGHYPAIDIEASISRVMSQITVPEHQQAAQQFKQIYSLYSQNQDLISVGAYSRGSDSR  416
            AE GHYPAID+ A++SRV + +T  EH+Q A  +++  +LY + + LI +G Y RG D+ 
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  417  LDEAVDRQPQFRSFLQQDMSQSFSVKESLERLQQ  450
             D A+D  P++ +FL+Q   +  +    +E+L+Q
Sbjct  396  TDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

852) fliI in NC_006677


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (995),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 177/383 (47%), Positives = 263/383 (69%), Gaps = 6/383 (1%)

Query  58   SEVVGFQGDVARLMSFGPLDGIGPGCEARIPLNRHDGGLGVNESWLGRVLDPLGQPIDGK  117
            +EVVG++G  A L +F +  G+   C  ++   R+   + V E+ LGRV+D +G+P+DG+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLH--CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR  112

Query  118  GPLFPSFERQPVQCPPPNAASRARLGERIDLGVRALDTFTTCRRGQRLGLFAGSGVGKST  177
               +P   ++  +  PP A  R  + + +  G+RA+D+ +TC  GQR+G+F+++GVGKST
Sbjct  113  E--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  178  LLSMLARGADCDVAVISLVGERGREVREFIEDDLGPEGLARSVLVIATSDSPPLMRREAA  237
            LL+ML  ++D D  V+ L+GERGREVREFI+  L+ E   R V+V+ATSD P+L R  A 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  238  LSAMAIAEYFRNQGKSVLLLMDSVTRFCMALREIGLSAGEPPATRGYPPSVFAELPRLLE  297
            + A +IAE+FR++GK V+LL DS+TR+  A REI+L+AGE + +  YPP+VF+ LPRLLE
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  298  RAGPGYADQGMITALFTVLVEGDDQNEPVADAVRGILDGHIILDRKIGEQGRYPAIDVLR  357
            R+G G  ++G ITA++TVLVEGDD NEP+AD VR++LDGHI+L R+++E+G+YPAIDVL 
Sbjct  291  RTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLA  348

Query  358  SLSRAVPGCNSPEENALTQRARAAMATYQRMADMIRLGAYKPGTDREVDEAIALMPKLNE  417
            +LSR  P   S E+  L+   R  +A YQ +  +IR+G Y+ G D + D AI   P +  
Sbjct  349  TLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  418  FLSQGRNERTTRAEAFEQLAQIM  440
            FL Q+++E       +E+L QI+
Sbjct  409  FLRQSKDEVCGPELLIEKLHQIL  431

853) fliI in NC_016112


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (995),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 171/365 (47%), Positives = 253/365 (70%), Gaps = 3/365 (0%)

Query  67   AEVVGFSGDRLFLMPTGDPYGLEPDCRVIPMSKEYLARVGFSLLGRVLDGAGNALDGKGP  126
            AEVVG++G + +L P     GL+ + +V+++ +     VG +LLGRV+DG G +LDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  127  LKTDAQVSLTGVPVNPLSRKPIREVLDVGVRAINALLCVGRGQRMGLFAGTGVGKSVLLG  186
            L         ++P  ++ R+PI + L  G+RAI+++   G GQR+G+F++ GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MMTKFTNADVVVVGLIGERGREVNEFVQKILGTEGLSRSVVVATPADYPPLMRANGALLA  246
            M+ +  +AD  V+ LIGERGREV EF++  L+ E   R V+V + +D P+L R  + ++A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TSIAEYFRDQGLDVLLLMDSLTRYAQAHREIALAIDEPPATKGYPPSVFAKLPRLVERAG  306
            T+IAE+FRD+G  V+LL DSLTRYA+A REIALA +E + +  YPP+VF+ LPRL+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  307  NGDEGGGSITAFYTVLTEGDDPNDPVADSARGVLDGHIVLTRELAESGHFPAIDIEASVS  366
             G+   GSITAFYTVL EGDD N+P+AD  R++LDGHIVL+R LAE GH+PAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  367  RVLPDIVDDDHLRMVRKLRGLYSLYQQNRDLISVGAYKPGSNPNIDLAIEKIAAIRNFLQ  426
            RV+P +  ++H ++   LR   +LYQ+   LI +G Y+ G + + D AI+  + I  FL+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  427  QDMNE  431
            Q  +E
Sbjct  412  QSKDE  416

854) vfu_A01408 in NC_016602


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (995),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 168/365 (47%), Positives = 262/365 (72%), Gaps = 3/365 (0%)

Query  66   AQVVGFDHNVAYLMPIRRLGGLFAGAKVVPLEGDSTVQLSSQWLGRVVNGLGEALDDGAP  125
            A+VVG++ + A L P+   +GL  G +V++L     V ++   LGRV++G+G +LD G  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRE  113

Query  126  LRGGDRVSLEPKPINPLKRRPVDTPLDVGVRTINGLLTVGKGQRIGLMAGSGVGKSVLMG  185
            L    +   ++ P  ++ R+P+  PL  G+R+I+++ T G GQR+G+ +++GVGKS L++
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  186  MITQNTEADVIVVGLIGERGREVREFIERNLTEQARRKaiiiaaPADESPLMRLRATLLC  245
            M+ +  +AD  V+ LIGERGREVREFI+  L+E++R++ +I+ A +D ++L R+RA ++ 
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  246  HRVAEYFRDQGKDVLLLMDSLTRYAMAQREIALSLGEPPASRGYPPSVFSVLPQLLERAG  305
              +AE+FRD+GK V+LL DSLTRYA A REIAL+ GE + S  YPP+VFS LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  306  NSDNPDGSLSAIYTVLAEGDDQQDPVVDSARAILDGHVVLSRQLAEQGHYPAIDVNASIS  365
             +++  GS++A+YTVL EGDD ++P+ D  R++LDGH+VLSR+LAE+GHYPAIDV A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  366  RCMSAVTPEAHVTVANQFRQLYANYLQVKELLPLGGYQPGQDAELDRAVAMYPHLKAFLQ  425
            R  + VT++ H  +A  +R+  A Y +V  L+ +G YQ G D++ D+A+  YP++ +FL+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  426  QSAKE  430
            QS  E
Sbjct  412  QSKDE  416

855) ABLL_2370 in NC_017192


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (994),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 168/366 (46%), Positives = 259/366 (71%), Gaps = 7/366 (1%)

Query  55   LGMVASINDISFTIVPFSFIDGFRIHDKVFLQKDGLSVKCGYGLLGRVINALGDPIDSKG  114
            L+ V +IN+    + PF+   G++  ++V   +    V  G +LLGRVI+++G P+D++ 
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-  112

Query  115  KIVNLEENAS--INKISMPALERGIIDKKFSTGVKAIDSMLTCGKGQKVGIFAGSGVGKS  172
               +L E      + ++ PA+ R  I + + TG++AIDS+ TCG GQ+VGIF+++GVGKS
Sbjct  113  ---ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  173  TLMGMIVKGCEAQIKVVALIGERGREIPEFIHYNL-DNNLDNTVIIAATSDESALMRKYG  231
            TL++M+ ++ +A+ +V+ LIGERGRE+ EFI++ L ++     VI+ ATSD +AL R  +
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  232  AFTAMSIAEFFRDKGHDVLLMMDSVTRFAMAQREIGLSTGEPPVSRGYPPSVFALLPQLM  291
             F A +IAEFFRD+G  V+L+ DS+TR+A A REI+L++GE +VS  YPP+VF+ LP+L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  292  ERAGNNQKGSITAFFTVLVDGDDMNDPIADQSRSILDGHIVLTRELTEQGFYPPINLLKS  351
            ER+G  +KGSITAF+TVLV+GDDMN+P+AD+ RS+LDGHIVL+R L+E+G YP+I++L +
Sbjct  290  ERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  352  ASRVMDKVVTKEHYNDFLKLKRVLSLIKENEVLVRVGAYKPGMDPELDNAMAKKEKIREF  411
             SRV   V + EH +    L+R L+L +E E+L+R+G Y+ G+D + D+A+     I  F
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  412  LTQDTQ  417
            L Q  +
Sbjct  410  LRQSKD  415

856) fliI in NC_021745


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (994),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 183/403 (46%), Positives = 264/403 (66%), Gaps = 24/403 (5%)

Query  79   LAEVVGFAEERAFLMPQTDLVGVVPGARVFPLEPQHLPLDTADPTIAHSKFLPVGPRLLG  138
            LAEVVG+   +A+L P T   G+  G +V +L  +H               +PVG  LLG
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQ--------------VPVGEALLG  99

Query  139  RVVDANGEPLDGKGLLGASEELAWGSLAPAPLNPLKRKPIERVLDVGVRAINGLLTVGQG  198
            RV+D+ G PLDG+ L     E+ W    + P  ++ R+PI + L  G+RAI+++ T G+G
Sbjct  100  RVIDGFGRPLDGREL----PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  199  QRLGLFAGSGVGKSVLLGMMARYTQADVVVVGLIGERGREVKEFIDEILGDEGLARSAVV  258
            QR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFID  L++E   R  +V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  259  AAPADNSPLMRLQGAAYAHTIAEYFRDRGCNVLLIVDSLTRYAMAQREIALAIGEPPATK  318
             A +D ++L R+++   A TIAE+FRD G  V+L+ DSLTRYA A REIALA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  319  GYPPSAFAKLPALVERAGNGMVDAAGRGGSITAFYTVLAEGDDQQDPIADAARAILDGHF  378
             YPP+ F+ LP L+ER+G       G  GSITAFYTVL EGDD ++P+AD  R++LDGH+
Sbjct  276  EYPPGVFSALPRLLERTG------MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  379  VLSRKLAEQGHYPAIDIEQSISRVMSAIVPREQLDAARRFKQLYARYQRNRDLIAVGAYA  438
            VLSR+LAE+GHYPAID+  ++SRV + + ++E+ + A  +++  A YQ    LI +G Y 
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  439  RGSDPVTDQAIARYPSMEGFLQQGMFENESRERTLEKMNAVLS  481
            RG D  TD+AI  YP +  FL+Q+  E  + E  +EK++ +L+
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

857) fliI in NC_007958


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (996),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 174/380 (46%), Positives = 260/380 (69%), Gaps = 3/380 (0%)

Query  56   EVIGFTGNNAMVMPFAGLEGVRRGCRAVIANSAAQVRPSPAWLGRVINALGEPIDGKGPL  115
            EV+G+ G++A++ PF++  G++ G + +      QV  + A LGRVI+++G P+DG+  L
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-L  114

Query  116  PQGASPMPFRNSPPPAHSRKRVGAPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLS  175
            P+      +   PPPA  R+ +  PL  G+RA+++  TC  GQR+GIF+++GVGKS LL+
Sbjct  115  PE-VCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  176  MLARNVDAAVSVIGLIGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYLT  235
            ML    DA  +V+ LIGERGREV+EF++  L+EE   R V+VVATSD PAL R +A +++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  236  LSIAEYFRDEGKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAG  295
             +IAE+FRD+GK V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  296  PGLREGTISGIFTVLVDGDDHNEPVADAVRGILDGHIVMQRSIAERGRYPAINVLKSVSR  355
             G + G+I++++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG+YPAI+VL ++SR
Sbjct  294  MGEK-GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  356  TMPRSADPAYLPVIKRARQVMATYADMEELIRLGAYRPGSSVEVDEAVRLHEPLEEFLRQ  415
              P  +      +    R+ +A Y ++E LIR+G Y+ G   + D A+     +  FLRQ
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  416  AKDEATSLSSGYAQLEQILK  435
            +KDE  +      +L+QIL 
Sbjct  413  SKDEVCGPELLIEKLHQILT  432

858) fliI in NC_020555


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (996),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 165/367 (45%), Positives = 257/367 (71%), Gaps = 3/367 (0%)

Query  90   QSLGMVIAIEGEKFFISPFSFVEGHKCGDKVEILNHGLNIPVGEAMLGRVVNPLGEPIDD  149
            + L+ V++I+G K ++SPF+   G  CG++V  L +  ++PVGEA+LGRV++ +G P+D+
Sbjct  52   EELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG  111

Query  150  KGSLHTQATTPLMRSPLSALKRGLIDEVFEVGVKSIDSILTCGKGQKMGIFAGSGVGKST  209
            +  L           P +A+ R  I + +  G+++IDS+ TCG GQ++GIF+++GVGKST
Sbjct  112  R-ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  210  LMGMIVRGAKAPIKVIALIGERGREVPEFI-YKNLNNDLTNTILVVATSDDSPLMRKYGA  268
            L++M+  ++ A  +V+ LIGERGREV EFI +   ++     ++VVATSD ++L R  + 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  269  FSAMAIAEYFKSLGNDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLTLLPQLME  328
            F A +IAE+F+  G+ V+++ DS+TR+A A REI+LA GE + S  YPP+V++ LP+L+E
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  329  RAGKEDSVGSITAFFTVLVEGDDLSDPIADQSRSILDGHIVLNRDLTDMGIYPPINILNS  388
            R+G  +  GSITAF+TVLVEGDD+++P+AD+ RS+LDGHIVL+R L++ G YP+I++L +
Sbjct  291  RTGMGEK-GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  389  ASRIINDIISPEHLGYVRKFRRLYSLIKENEVLIRIGAYQRGADIELDEAINKRTAMEAF  448
             SR++  + S EH      +RR  +L +E E+LIRIG YQRG D + D AI+    + +F
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  449  LKQEIDE  455
            L+Q  DE
Sbjct  410  LRQSKDE  416

859) fliI in NC_017761


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (996),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 165/367 (45%), Positives = 257/367 (71%), Gaps = 3/367 (0%)

Query  90   QSLGMVIAIEGEKFFISPFSFVEGHKCGDKVEILNHGLNIPVGEAMLGRVVNPLGEPIDD  149
            + L+ V++I+G K ++SPF+   G  CG++V  L +  ++PVGEA+LGRV++ +G P+D+
Sbjct  52   EELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG  111

Query  150  KGSLHTQATTPLMRSPLSALKRGLIDEVFEVGVKSIDSILTCGKGQKMGIFAGSGVGKST  209
            +  L           P +A+ R  I + +  G+++IDS+ TCG GQ++GIF+++GVGKST
Sbjct  112  R-ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  210  LMGMIVRGAKAPIKVIALIGERGREVPEFI-YKNLNNDLTNTILVVATSDDSPLMRKYGA  268
            L++M+  ++ A  +V+ LIGERGREV EFI +   ++     ++VVATSD ++L R  + 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  269  FSAMAIAEYFKSLGNDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLTLLPQLME  328
            F A +IAE+F+  G+ V+++ DS+TR+A A REI+LA GE + S  YPP+V++ LP+L+E
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  329  RAGKEDSVGSITAFFTVLVEGDDLSDPIADQSRSILDGHIVLNRDLTDMGIYPPINILNS  388
            R+G  +  GSITAF+TVLVEGDD+++P+AD+ RS+LDGHIVL+R L++ G YP+I++L +
Sbjct  291  RTGMGEK-GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  389  ASRIINDIISPEHLGYVRKFRRLYSLIKENEVLIRIGAYQRGADIELDEAINKRTAMEAF  448
             SR++  + S EH      +RR  +L +E E+LIRIG YQRG D + D AI+    + +F
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  449  LKQEIDE  455
            L+Q  DE
Sbjct  410  LRQSKDE  416

860) Thena_0176 in NC_015499


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (995),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 169/380 (45%), Positives = 265/380 (70%), Gaps = 6/380 (1%)

Query  15   NYLPWNGTIDKISGYVIESIGPKVSIGEIVYIDSGKSQIPCLVIGFSSNKVYLTPFDAIE  74
             Y  W G I+ +S+ ++++  P V +GE+  I +G       V+G++++K  L+PF +  
Sbjct  18   GYCRW-GRIQDVSATLLNAWLPGVFMGELCCIKPGEELAE--VVGINGSKALLSPFTSTA  74

Query  75   GIEPGSIVKKTGKQLGLWVGKHLLGQVLDGLGRPLSDEYIQRDDMSQYRSIENKSPHPLK  134
            G++ G  V    ++  + VG  LLG+V+DG+GRPL +  +      +Y   +  +P ++ 
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY---DAMPPPAMV  131

Query  135  RGRIREPISTGIRAIDGLLTLGKGQRVGIFAGSGIGKTTLLGMISRFCNAQVNIIALVGE  194
            R  I +P+ TGIRAID++ T G GQRVGIF+++G+GK+TLL+M+    +A+ N++ L+GE
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  195  RGREVREFLEESLGEDGLAKSVVIVSTSDNPPSQRVLSAFTATVIAEYFRDLGMDVLMVM  254
            RGREVREF++ +L+E+   + V++V+TSD P+ +RV + F AT IAE+FRD G  V+++ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  255  DSLTRVCMAQRELGLSIGEPPTTRGYPPSVFTMMARLLERAGTSDKGSITGIYTVLVEGD  314
            DSLTR   A RE++L+ GE + +  YPP+VF+ ++RLLER+G ++KGSIT++YTVLVEGD
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  315  DLAEPIADHARSILDGHIVLSRDLAERGYYPPIDISQSVSRLMNSITDKDHLNLSYRIKE  374
            D+ EP+AD+ RS+LDGHIVLSR LAERG YP+ID+  ++SR+   +T  +H +L+  ++ 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  375  LIASYKEAYDLINIGAYQKG  394
             +A Y+E   LI IG YQ+G
Sbjct  372  RLALYQEVELLIRIGEYQRG  391

861) fliI in NC_017663


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (994),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 172/391 (44%), Positives = 261/391 (67%), Gaps = 5/391 (1%)

Query  3    GQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGESWLG  62
            G+LC I ++++    A+ VG+N   + L PF    GL  G +V +  + H++ +GE+ LG
Sbjct  43   GELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  63   RVVNGLGEPLDGKGRLNGNDllpplppSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRV  122
            RV++G+G PLDG+  L         + +  ++ R+++ +PL  G++AI+++ T G GQRV
Sbjct  100  RVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  123  GLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAP  182
            G+ +++GVGKS LL+M+     AD  V+ LIGERGREV+EFID +L+ +   + ++VVA 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  183  ADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYP  242
            +D ++L R++A  +  +IA  FRD G +V+LL DSLTRYA A REIAL+ GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  243  PSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLTRKLAE  302
            P+ F+ +P+L+E +G +E  GS+TA+YTVL EGDD ++P+ D  R++LDGHIVL+R+LAE
Sbjct  279  PGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  303  AGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYMEIKPLIPLGGYVAGADASVD  362
             GHYPAID+  ++SR    VTS EH+Q A  L++  A Y E+  LI +G Y  G D+  D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  363  KAVKMFPAIERFLRQEMREPASLELVQSRLQ  393
            KA+  +P I  FLRQ   E  + EL+  +L+
Sbjct  398  KAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

862) EcolC_3379 in NC_010468


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (996),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 176/411 (43%), Positives = 272/411 (67%), Gaps = 5/411 (1%)

Query  24   GRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAG  83
            GR+  +++ LL++    +  G+LC I ++++    A+ VG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  84   ARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDllpplppSVNPLTRRSVDEP  143
             +V +  + H++ +GE+ LGRV++G+G PLDG+  L         + +  ++ R+++ +P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  144  LDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKE  203
            L  G++AI+++ T G GQRVG+ +++GVGKS LL+M+     AD  V+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  204  FIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYA  263
            FID +L+ +   + ++VVA +D ++L R++A  +  +IA  FRD G +V+LL DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  264  MAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPI  323
             A REIAL+ GE + +  YPP+ F+ +P+L+E +G +E  GS+TA+YTVL EGDD ++P+
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDDMNEPL  317

Query  324  VDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYM  383
             D  R++LDGHIVL+R+LAE GHYPAID+  ++SR    VTS EH+Q A  L++  A Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  384  EIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQ  434
            E+  LI +G Y  G D+  DKA+  +P I  FLRQ   E  + EL+  +L+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

863) KO11_01265 in NC_017660


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (996),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 176/411 (43%), Positives = 272/411 (67%), Gaps = 5/411 (1%)

Query  24   GRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAG  83
            GR+  +++ LL++    +  G+LC I ++++    A+ VG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  84   ARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDllpplppSVNPLTRRSVDEP  143
             +V +  + H++ +GE+ LGRV++G+G PLDG+  L         + +  ++ R+++ +P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  144  LDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKE  203
            L  G++AI+++ T G GQRVG+ +++GVGKS LL+M+     AD  V+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  204  FIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYA  263
            FID +L+ +   + ++VVA +D ++L R++A  +  +IA  FRD G +V+LL DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  264  MAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPI  323
             A REIAL+ GE + +  YPP+ F+ +P+L+E +G +E  GS+TA+YTVL EGDD ++P+
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDDMNEPL  317

Query  324  VDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYM  383
             D  R++LDGHIVL+R+LAE GHYPAID+  ++SR    VTS EH+Q A  L++  A Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  384  EIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQ  434
            E+  LI +G Y  G D+  DKA+  +P I  FLRQ   E  + EL+  +L+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

864) EKO11_3659 in NC_016902


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (996),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 176/411 (43%), Positives = 272/411 (67%), Gaps = 5/411 (1%)

Query  24   GRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAG  83
            GR+  +++ LL++    +  G+LC I ++++    A+ VG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  84   ARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDllpplppSVNPLTRRSVDEP  143
             +V +  + H++ +GE+ LGRV++G+G PLDG+  L         + +  ++ R+++ +P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  144  LDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKE  203
            L  G++AI+++ T G GQRVG+ +++GVGKS LL+M+     AD  V+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  204  FIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYA  263
            FID +L+ +   + ++VVA +D ++L R++A  +  +IA  FRD G +V+LL DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  264  MAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPI  323
             A REIAL+ GE + +  YPP+ F+ +P+L+E +G +E  GS+TA+YTVL EGDD ++P+
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDDMNEPL  317

Query  324  VDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYM  383
             D  R++LDGHIVL+R+LAE GHYPAID+  ++SR    VTS EH+Q A  L++  A Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  384  EIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQ  434
            E+  LI +G Y  G D+  DKA+  +P I  FLRQ   E  + EL+  +L+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

865) fliI in NC_022364


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (996),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 176/411 (43%), Positives = 272/411 (67%), Gaps = 5/411 (1%)

Query  24   GRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAG  83
            GR+  +++ LL++    +  G+LC I ++++    A+ VG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  84   ARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDllpplppSVNPLTRRSVDEP  143
             +V +  + H++ +GE+ LGRV++G+G PLDG+  L         + +  ++ R+++ +P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  144  LDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKE  203
            L  G++AI+++ T G GQRVG+ +++GVGKS LL+M+     AD  V+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  204  FIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYA  263
            FID +L+ +   + ++VVA +D ++L R++A  +  +IA  FRD G +V+LL DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  264  MAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPI  323
             A REIAL+ GE + +  YPP+ F+ +P+L+E +G +E  GS+TA+YTVL EGDD ++P+
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDDMNEPL  317

Query  324  VDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYM  383
             D  R++LDGHIVL+R+LAE GHYPAID+  ++SR    VTS EH+Q A  L++  A Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  384  EIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQ  434
            E+  LI +G Y  G D+  DKA+  +P I  FLRQ   E  + EL+  +L+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

866) lfiI in NC_013361


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (994),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 176/411 (43%), Positives = 272/411 (67%), Gaps = 5/411 (1%)

Query  24   GRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAG  83
            GR+  +++ LL++    +  G+LC I ++++    A+ VG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  84   ARVFPEEKAHDILIGESCLGRVVNGLGEPLDGKGRLNGNDllpplppSVNPLTRRSVDEP  143
             +V +  + H++ +GE+ LGRV++G+G PLDG+  L         + +  ++ R+++ +P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  144  LDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKE  203
            L  G++AI+++ T G GQRVG+ +++GVGKS LL+M+     AD  V+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  204  FIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYA  263
            FID +L+ +   + ++VVA +D ++L R++A  +  +IA  FRD G +V+LL DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  264  MAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPI  323
             A REIAL+ GE + +  YPP+ F+ +P+L+E +G +E  GS+TA+YTVL EGDD ++P+
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDDMNEPL  317

Query  324  VDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYM  383
             D  R++LDGHIVL+R+LAE GHYPAID+  ++SR    VTS EH+Q A  L++  A Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  384  EIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQ  434
            E+  LI +G Y  G D+  DKA+  +P I  FLRQ   E  + EL+  +L+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

867) lfiI in NC_010498


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (995),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 175/411 (43%), Positives = 272/411 (67%), Gaps = 5/411 (1%)

Query  24   GRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAG  83
            GR+  +++ LL++    +  G+LC I ++++    A+ VG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  84   ARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDllpplppSVNPLTRRSVDEP  143
             +V +  + H++ +GE+ LGRV++G+G PLDG+  L         + +  ++ R+++ +P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  144  LDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKE  203
            L  G++AI+++ T G GQRVG+ +++GVGKS LL+M+     AD  V+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  204  FIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSVAAWFRDRGHHVLLLVDSLTRYA  263
            FID +L+ +   + ++VVA +D ++L R++A  +  ++A  FRD G +V+LL DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  264  MAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPI  323
             A REIAL+ GE + +  YPP+ F+ +P+L+E +G +E  GS+TA+YTVL EGDD ++P+
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDDMNEPL  317

Query  324  VDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYM  383
             D  R++LDGHIVL+R+LAE GHYPAID+  ++SR    VTS EH+Q A  L++  A Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  384  EIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQ  434
            E+  LI +G Y  G D+  DKA+  +P I  FLRQ   E  + EL+  +L+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

868) lfiI in NC_017635


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (996),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 176/411 (43%), Positives = 272/411 (67%), Gaps = 5/411 (1%)

Query  24   GRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAG  83
            GR+  +++ LL++    +  G+LC I ++++    A+ VG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  84   ARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDllpplppSVNPLTRRSVDEP  143
             +V +  + H++ +GE+ LGRV++G+G PLDG+  L         + +  ++ R+++ +P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  144  LDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKE  203
            L  G++AI+++ T G GQRVG+ +++GVGKS LL+M+     AD  V+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  204  FIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYA  263
            FID +L+ +   + ++VVA +D ++L R++A  +  +IA  FRD G +V+LL DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  264  MAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPI  323
             A REIAL+ GE + +  YPP+ F+ +P+L+E +G +E  GS+TA+YTVL EGDD ++P+
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDDMNEPL  317

Query  324  VDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYM  383
             D  R++LDGHIVL+R+LAE GHYPAID+  ++SR    VTS EH+Q A  L++  A Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  384  EIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQ  434
            E+  LI +G Y  G D+  DKA+  +P I  FLRQ   E  + EL+  +L+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

869) WFL_01270 in NC_017664


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (996),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 176/411 (43%), Positives = 272/411 (67%), Gaps = 5/411 (1%)

Query  24   GRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAG  83
            GR+  +++ LL++    +  G+LC I ++++    A+ VG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  84   ARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDllpplppSVNPLTRRSVDEP  143
             +V +  + H++ +GE+ LGRV++G+G PLDG+  L         + +  ++ R+++ +P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  144  LDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKE  203
            L  G++AI+++ T G GQRVG+ +++GVGKS LL+M+     AD  V+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  204  FIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYA  263
            FID +L+ +   + ++VVA +D ++L R++A  +  +IA  FRD G +V+LL DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  264  MAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPI  323
             A REIAL+ GE + +  YPP+ F+ +P+L+E +G +E  GS+TA+YTVL EGDD ++P+
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDDMNEPL  317

Query  324  VDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYM  383
             D  R++LDGHIVL+R+LAE GHYPAID+  ++SR    VTS EH+Q A  L++  A Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  384  EIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQ  434
            E+  LI +G Y  G D+  DKA+  +P I  FLRQ   E  + EL+  +L+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

870) Sdel_2155 in NC_013512


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (993),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 181/436 (42%), Positives = 289/436 (67%), Gaps = 13/436 (2%)

Query  3    LQRLRHKLQEKSLSPMFGTITKISSTTIEACGLRPSI--GDIVNIVSLDSDKNELGMVTE  60
            +QRLR K          G I  +S+T ++A    P++  G++  I       +EL+ V  
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNA--WLPGVFMGELCCI----KPGEELAEVVG  59

Query  61   VDRNAFFISPFGFIEGFKIGDKVFISEQGMMIPVGEELLGRVVDPFIRPKDGKG-AIGAR  119
            ++ +  ++SPF    G+  G++V    +   +PVGE LLGRV+D F RP DG+  +   +
Sbjct  60   INGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCW  119

Query  120  SSASIMKAPLDPMKRGLINEPFCVGVKTIDGLLTCGKGQKMGIFAGSGVDKSTLMGMIVR  179
                 M +P  +M R  I +P+  G+++ID++ TCG GQ++GIF+++GV+KSTL++M+  
Sbjct  120  KDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  180  GSEAPIKVVALIGERGREVPEFIEKNLGGNLEN-TVIIVATSDDSPLMRKYGAFSAMSVA  238
            +++A  +V+ LIGERGREV EFI+  L+ +  +  VI+VATSD ++L R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  239  EYFKNQGRDVLFMMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLALLPQLMERAGKEEG  298
            E+F+++G+ V+++ DS+TR+A A REI+LA GE + S  YPP+V++ LP+L+ER+G  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  299  KGSITAFFTVLVEGDDLSDPIADQSRSILDGHIVLSRELTDYGIYPPINIQNSASRVMGD  358
            KGSITAF+TVLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV   
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  359  VIETEHKKAAMRFKRLNSILKENEVLIRIGAYEKGNDKELDLAISKKEKMNSFLQQAPEE  418
            V   EH++ A  ++R  ++ +E E+LIRIG Y++G D + D AI     + +FL+Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

Query  419  VVPFETTVSELKQIIA  434
            V   E  +  L QI++
Sbjct  417  VCGPELLIEKLHQILT  432

871) Bxe_A3118 in NC_007951


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (993),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 178/369 (49%), Positives = 260/369 (71%), Gaps = 6/369 (1%)

Query  60   GEVVGFTHDGALVMPLAGLNGLSDITEVQGCGSAWGTFDAAGLLGRVVDGLGNPLDGGPV  119
            +EVVG+    AL+ P+++  GL    +V +         + +LLGRV+DG+G PLDG   
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG---  111

Query  120  PRPLASAAAQAGEGTLNP-LERPVIATPFATGVRAIDGLLTCGVGQRTGIFAPAGGGKST  178
             R L+    +  ++   P + R  I+ P+ TG+RAID++ TCG GQR GIF+++G GKST
Sbjct  112  -RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  179  IMGMIANGASTDAIVVALIGERGREVAEFIHDHL-ERRRASTIVIAATSDRPAAERIKAA  237
            +++M+ N++ +D+ V+ LIGERGREV EFI+  L E  R   +++ ATSDRPA ER++A 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  238  ELASQVAVGLRASGRNVLLLFDSLTRYARALRELGLAVGEPPLRGGFPPSVFAQLPRLIE  297
             +A+ +A  +R +G+ V+LL DSLTRYARA RE++LA GE ++ G +PP+VF+ LPRL+E
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  298  AAGVTAQGSITAFYTVLADEADLSDPVAEEARSLLDGHIQLSSKLGAAGHYPAIDILRSR  357
             +G+  +GSITAFYTVL +  D+++P+A+E RSLLDGHI LS +L+  GHYPAID+L + 
Sbjct  291  RTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  358  SRLMTRVAAAVHQADANRVRDWLARYEDVELLLQIGEYQRGNDADTDQAIDRRAAIVSFL  417
            SR+   V++  H+  A  +R +LA Y++VELL++IGEYQRG D+DTD+AID  + I +FL
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  418  RQRYDTRCG  426
            RQ  D  CG
Sbjct  411  RQSKDEVCG  419

872) fliI in NC_013508


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (993),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 179/366 (49%), Positives = 253/366 (70%), Gaps = 7/366 (1%)

Query  67   AEVVGFNGRQLFLMPLEEVEGIVPGARVWAPAAALNSGKQLPLGPALLGRVLDGSARPLD  126
            AEVVG+NG + +L P+    G+  G +V     AL    Q+P+G ALLGRV+DG +RPLD
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV----MALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  127  GLQPPDESDHGGLSSQPFNPLQRTPITQVLDVGVRAINALLTVGRGQRMGLFAGSGVGKS  186
            G + P+     +  + P  ++ R PITQ L  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  GRELPEVC-WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  187  VLLGMMARYTQADVIVVGLIGERGREVKDFIENILGEEGRQRSVVIAAPADVSPLLRMQG  246
             LL+M+    +AD  V+ LIGERGREV++FI+  L+EE R+R V++ A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  247  AAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALV  306
               AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  307  ERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRRLAEAGHYPAIDIE  366
            ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ 
Sbjct  290  ERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  367  ASISRAMTSLIDEAHYARVRSFKQLLSSYQRNRDLISVGAYARGSDPLLDQAIALYPQLE  426
            A++SR    +  + H      +++ L+ YQ    LI +G Y RG D   D+AI  YP++ 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  427  AFLQQG  432
            +FL+Q+
Sbjct  408  TFLRQS  413

873) fliI in NC_017309


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (993),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 179/366 (49%), Positives = 253/366 (70%), Gaps = 7/366 (1%)

Query  67   AEVVGFNGRQLFLMPLEEVEGIVPGARVWAPAAALNSGKQLPLGPALLGRVLDGSARPLD  126
            AEVVG+NG + +L P+    G+  G +V     AL    Q+P+G ALLGRV+DG +RPLD
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV----MALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  127  GLQPPDESDHGGLSSQPFNPLQRTPITQVLDVGVRAINALLTVGRGQRMGLFAGSGVGKS  186
            G + P+     +  + P  ++ R PITQ L  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  GRELPEVC-WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  187  VLLGMMARYTQADVIVVGLIGERGREVKDFIENILGEEGRQRSVVIAAPADVSPLLRMQG  246
             LL+M+    +AD  V+ LIGERGREV++FI+  L+EE R+R V++ A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  247  AAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALV  306
               AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  307  ERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRRLAEAGHYPAIDIE  366
            ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ 
Sbjct  290  ERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  367  ASISRAMTSLIDEAHYARVRSFKQLLSSYQRNRDLISVGAYARGSDPLLDQAIALYPQLE  426
            A++SR    +  + H      +++ L+ YQ    LI +G Y RG D   D+AI  YP++ 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  427  AFLQQG  432
            +FL+Q+
Sbjct  408  TFLRQS  413

874) fliI in NC_004463


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (993),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 170/364 (47%), Positives = 254/364 (70%), Gaps = 3/364 (0%)

Query  56   EVIGFSGNNAVVMPFAGLDGVRRGCKAVIANAANQVRPSTAWLGRVVNALGEPIDGKGPL  115
            EV+G++G++A++ PF++  G++ G + +     +QV  + A LGRV++++G P+DG+  L
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-L  114

Query  116  PQGSSPMPFRNTPPPAHSRKRVGSPLDLGVRAMNTFLTCCRGQRMGIFAGSGVGKSVLLS  175
            P+      +   PPPA  R+ +  PL  G+RA+++  TC  GQR+GIF+++GVGKS LL+
Sbjct  115  PEVCW-KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  176  MLARNVDAAVSVIGLIGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYLT  235
            ML    DA  +V+ LIGERGREV+EF++  L+EE   R V+VVATSD PAL R +A +++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  236  LAVAEYFRDEDKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAG  295
             ++AE+FRD++K V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  296  PGLGEGAITAIFTVLVDGDDHNEPIADAVRGILDGHIVMQRSIAERGRYPAINILKSVSR  355
             G   G+ITA++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG+YPAI++L ++SR
Sbjct  294  MG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  356  TMPKSADPEFWPTIQKARQVMATYADMEELIRLGAYRAGSSPEVDEAIRLHEPLEGFLRQ  415
              P  +  E +      R+ +A Y ++E LIR+G Y+ G   + D AI     +  FLRQ
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  416  RKDE  419
             KDE
Sbjct  413  SKDE  416

875) Rpdx1_3888 in NC_014834


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (993),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 172/381 (46%), Positives = 260/381 (69%), Gaps = 3/381 (0%)

Query  56   EVIGFTGNNAIVMPFAGLEGVRRGCRAIIANAAAQVRPSPHWLGRVVNALGEPIDGKGPL  115
            EV+G+ G++A++ PF++  G++ G + +      QV  +   LGRV++++G P+DG+   
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE--  113

Query  116  VQGPSPMPFRNQPPPAHSRKRVGAPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLS  175
            +       +   PPPA  R+ +  PL  G+RA+++  TC  GQR+GIF+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  176  MLARNVDAAVSVIGLIGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYLT  235
            ML    DA  +V+ LIGERGREV+EF++  L+EE   R V+VVATSD PAL R +A +++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  236  LAIAEYFRDNDKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAG  295
             +IAE+FRDN+K V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  296  PGLGEGTITGIFTVLVDGDDHNEPVADAVRGILDGHIVMQRAIAERGRYPAINVLKSVSR  355
             G   G+IT+++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG+YPAI+VL ++SR
Sbjct  294  MG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  356  TMPKSADPVYLPLIKRARQIMATYADMEELIRLGAYRPGSSAEVDEAVRLHEPLEDFLRQ  415
              P  +      L    R+ +A Y ++E LIR+G Y+ G  ++ D A+     +  FLRQ
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  416  GKDEATSLQSGYAQLEQILSN  436
            +KDE  + +    +L+QIL++
Sbjct  413  SKDEVCGPELLIEKLHQILTE  433

876) VEA_001189 in NC_013457


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (993),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 166/365 (46%), Positives = 259/365 (71%), Gaps = 3/365 (0%)

Query  66   AQVVGFEHTIAYLMPIRRLGGLFAGAKVIPLDGDSTVQLSAQWLGRVLNGLGEPLDDGAP  125
            A+VVG++ + A L P+   +GL  G +V++L     V ++   LGRV++G+G PLD G  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRE  113

Query  126  LKGGDRVSLEPKPINPLKRRPVDTPLNVGVRAINGLLTVGKGQRIGLMAGSGVGKSVLMG  185
            L    +   ++ P  ++ R+P+  PL  G+RAI+++ T G GQR+G+ +++GVGKS L++
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  186  MITKNTEADVIVVGLIGERGREVREFIERNLTPEARKKaiiiaaPADESPLMRLRATLLC  245
            M+ +  +AD  V+ LIGERGREVREFI+  L+ E+RK+ +I+ A +D ++L R+RA ++ 
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  246  HRVSEYFRDQGKDVLLLMDSLTRYAMAQREIALSLGEPPASRGYPPSVFSVLPQLLERAG  305
              ++E+FRD+GK V+LL DSLTRYA A REIAL+ GE + S  YPP+VFS LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  306  NSENQHGSLTAIYTVLAEGDDQQDPVVDSARAILDGHVVLSRQLAEQGHYPAIDINASIS  365
             +E+  GS+TA+YTVL EGDD ++P+ D  R++LDGH+VLSR+LAE+GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  366  RCMSTCTQEAHSTIANNFRQMYSNYLQVKELLPLGGYQPGQDPELDQSVAMYPNLRAYLQ  425
            R  +  T + H  +A  +R+  + Y +V  L+ +G YQ G D + D+++  YP++ ++L+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  426  QAANE  430
            Q+ +E
Sbjct  412  QSKDE  416

877) fliI in NC_005296


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (993),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 171/381 (45%), Positives = 261/381 (69%), Gaps = 3/381 (0%)

Query  56   EVIGFTGNNAIVMPFAGLEGVRRGCRAIIANSAAQVRPSPHWLGRVVNALGEPIDGKGPL  115
            EV+G+ G++A++ PF++  G++ G + +      QV  +   LGRV++++G P+DG+   
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE--  113

Query  116  VQGPSPMQFRNQPPPAHSRKRVGMPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLS  175
            +      ++   PPPA  R+ +  PL  G+RA+++  TC  GQR+GIF+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  176  MLARNVDAAVSVIGLIGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYLT  235
            ML    DA  +V+ LIGERGREV+EF++  L+EE   R V+VVATSD PAL R +A +++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  236  LAIAEYFRDNDKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAG  295
             +IAE+FRDN+K V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  296  PGLGEGTITGIFTVLVDGDDHNEPVADAVRGILDGHIVMQRSIAERGRYPAINVLKSVSR  355
             G   G+IT+++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG+YPAI+VL ++SR
Sbjct  294  MG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  356  TMPKSADPVYLPMIKRARQIMATYADMEELIRLGAYRPGSSAEVDEAVRLHEPLEDFLRQ  415
              P  +      +    R+ +A Y ++E LIR+G Y+ G  ++ D A+     +  FLRQ
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  416  GKDEATSLQSGYVQLEQILSN  436
            +KDE  + +    +L+QIL++
Sbjct  413  SKDEVCGPELLIEKLHQILTE  433

878) fliI in NC_011004


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  266 bits (993),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 171/381 (45%), Positives = 261/381 (69%), Gaps = 3/381 (0%)

Query  56   EVIGFTGNNAIVMPFAGLEGVRRGCRAIIANSAAQVRPSPHWLGRVVNALGEPIDGKGPL  115
            EV+G+ G++A++ PF++  G++ G + +      QV  +   LGRV++++G P+DG+   
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE--  113

Query  116  VQGPSPMQFRNQPPPAHSRKRVGMPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLS  175
            +      ++   PPPA  R+ +  PL  G+RA+++  TC  GQR+GIF+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  176  MLARNVDAAVSVIGLIGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYLT  235
            ML    DA  +V+ LIGERGREV+EF++  L+EE   R V+VVATSD PAL R +A +++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  236  LAIAEYFRDNDKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAG  295
             +IAE+FRDN+K V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  296  PGLGEGTITGIFTVLVDGDDHNEPVADAVRGILDGHIVMQRSIAERGRYPAINVLKSVSR  355
             G   G+IT+++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG+YPAI+VL ++SR
Sbjct  294  MG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  356  TMPKSADPVYLPMIKRARQIMATYADMEELIRLGAYRPGSSAEVDEAVRLHEPLEDFLRQ  415
              P  +      +    R+ +A Y ++E LIR+G Y+ G  ++ D A+     +  FLRQ
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  416  GKDEATSLQSGYVQLEQILSN  436
            +KDE  + +    +L+QIL++
Sbjct  413  SKDEVCGPELLIEKLHQILTE  433

879) Amir_2344 in NC_013093


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (992),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 192/393 (49%), Positives = 279/393 (71%), Gaps = 3/393 (0%)

Query  41   IGDLVRIGSGGQEVLAEVVALGAGKITClplgalggiglgaEVVSTNRPLQIAVGEQLRG  100
            +G+L  I +G +  LAEVV++ ++K    P+ + +G+  G +V++  R  Q++VGE L G
Sbjct  42   MGELCCIKPGEE--LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  101  RVLDGLGRPMDGGPPLVGLESVTVDMTPPSALQRQLIDKPLQLGVRALDTMVPCGQGQRI  160
            RV+DG+GRP+DG   L  +     D  PP+A+ RQ I +PL  G+RA+D++  CG+GQR+
Sbjct  100  RVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  161  GIFAGSGVGKSSLLSMITRGTEAEITVVALIGERGREVREFIENDLGPEGLARSVVVVAT  220
            GIF+++GVGKS+LL+M+  + +A+  V+ LIGERGREVREFI+  L+ E   R V+VVAT
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  221  SDQPPMVRLRAGFVATRIAEWYRDRGANALLMMDSLTRIAMAQREVGLSAGEPPATRGFP  280
            SD+P++ R+RA FVAT IAE +RD G   +L+ DSLTR A A RE++L+AGE + +  +P
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  281  PSVFALMPTLLERAGPAERGSITGLYTVLVEGDDHNEPIADTARSILDGHVVLDRRLATS  340
            P+VF+ +P LLER+G +E+GSIT++YTVLVEGDD NEP+AD  RS+LDGH+VL RRLA  
Sbjct  279  PGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAER  338

Query  341  GHFPSIDVLESVSRVTGAVTTPeqradaaqlrrllaarrdvrelvEIGAYVGGTNLDADR  400
            GH+P+IDVL ++SRV   VT+ E+R  AA LRR LA  ++V  L+ IG Y  G + D+D+
Sbjct  339  GHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDK  398

Query  401  AMALEPRINGLLTQDIHARTSAESSWEELRELL  433
            A+   P I  +L Q  +   ++E   E L+++L
Sbjct  399  AIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

880) fliI in NC_009715


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (992),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 175/374 (47%), Positives = 262/374 (71%), Gaps = 7/374 (1%)

Query  52   KSKNGLGMVTQIKSGGAFISPFGFVEGFRIGDFVYASDQGMNIPVGRNLLGRVVDPFMKP  111
            K+ + L+ V  I+++ A++SPF    G++ G+ V A  +  ++PVG  LLGRV+D F +P
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRP  108

Query  112  VDGKGAIETS--EYMPIMKAPIDAMKRGLINEPFSVGIKTIDGLLTCGKGQKLGIFAGSG  169
            +DG+   E    +Y ++   P  AM R  I +P+  GI++ID++ TCG GQ++GIF+++G
Sbjct  109  LDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  170  VGKSTLMGMIVKNTLAPIKVVALIGERGREVPEFIEKNLGGNL-DGTVIVVATSDDSSLM  228
            VGKSTL++M+ +   A  +V+ LIGERGREV EFI+  L+ +     VIVVATSD ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  229  RKYGAFCAMSVAEYFKNQGNDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSSLTLL  288
            R  + F A ++AE+F+++G+ V+++ DS+TR+A A REI+LA GE + S  YPP+ ++ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  289  PQLMERAGKEEGKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPI  348
            P+L+ER+G  E KGSITAF+TVLVEGDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I
Sbjct  286  PRLLERTGMGE-KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI  344

Query  349  NIQNSASRVMGDVISNEHRQNAMKFKRLYSLLKENEVLLRIGAYQRGSDKELDLAISKKE  408
            ++  + SRV   V S+EHRQ A  ++R  +L +E E+L+RIG YQRG D + D AI    
Sbjct  345  DVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  409  YMENFLKQDAQEVY  422
             +  FL+Q  +EV 
Sbjct  405  DICTFLRQSKDEVC  418

881) fliI in NC_008347


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (992),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 192/424 (46%), Positives = 275/424 (65%), Gaps = 15/424 (3%)

Query  19   GRVTALNGLLVEAEGPKAGLSLGAHAKIETGNGIAECEVVGFRGETALMMPFGPLEGIRP  78
            GR+  +++ L++A  P  G+ +G    I  G+ +AE  VVG+ G  AL+ PF +  G++ 
Sbjct  23   GRIQDVSATLLNAWLP--GVFMGELCCIKPGEELAE--VVGINGSKALLSPFTSTAGLHC  78

Query  79   GARALLQPEAARVRPSRAWLGRVLDGFGRPLDDGVPLTEGG-TPYPLKGNPPSAHARARL  137
            G + +      +V  + A LGRV+DGFGRPLD G  L E     Y   + PP+A  R  +
Sbjct  79   GQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRELPEVCWKDY--DAMPPPAMVRQPI  135

Query  138  GERMDMGVRVLNSFVPMRRGQRLGIFAGSGVGKSVLMSMLARACDADVIVIGLIGERGRE  197
             + +  G+R ++S      GQR+GIF+++GVGKS L++ML  A DAD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  198  AREFVDDVLGPEGRKRSVVITETSDAPALARRQAAHLTLTAAEYFRDQGLDVLCLMDSVT  257
             REF+D  L+ E RKR V++  TSD PAL R +A  ++ T AE+FRD+G  V+ L DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  258  RFALAQREIGLAAGEPPTTRGYTPSVFAELPRLLERAGPGPQRKDGKKSGSITGLFTVLV  317
            R+A A REI+LAAGE + +  Y P+VF+ LPRLLER+G G         GSIT+++TVLV
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG-------EKGSITAFYTVLV  308

Query  318  DGDDHNEPIADAVRGILDGHVVMSRAIAERGRYPAIDVLKSVSRTAPEVYDAAERPLVAE  377
            +GDD NEP+AD VR++LDGH+V+SR +AERG+YPAIDVL ++SR  P V    +R L A 
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  378  ARKHLSAYADMEELIRLGAYTQGSNPAVDRAIELNEPLEAFLGQSKDDAADIPSTFTMLS  437
             R++L+ Y ++E LIR+G Y +G +   D+AI+    + +FL QSKD+  +    +  L 
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

Query  438  EILG  441
            +IL 
Sbjct  429  QILT  432

882) fliI in NC_021150


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (992),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 197/444 (45%), Positives = 290/444 (66%), Gaps = 20/444 (4%)

Query  17   LQR-RLDELPP--YRRSGRIVRATGMVLEAVGLDIPLGGVCRIELAAQPGGEARQAEAEV  73
            +QR RL   PP  Y R GRI   ++ +L+A   ++ +G +C I    +PG E     AEV
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL----AEV  57

Query  74   VGFAGERLFLMPLEEIAGLRPGARVFPLGEGGDALGARRFPLGERLLGRVVDSSGQpldg  133
            VG+ G + +L P+   AGL+ G +V +L         ++ P+GE LLGRV+D+ G+PLDG
Sbjct  58   VGINGSKALLSPFTSTAGLHCGQQVMALRR------RHQVPVGEALLGRVIDGFGRPLDG  111

Query  134  lgpldgVHHASLHTPPLNPLHRAPIDRQIDVGIRAINGLLSVGRGQRMGLFAGSGVGKSV  193
                + V     ++ P  ++ R PI + +  GIRAI+++ + G GQR+G+F+++GVGKS 
Sbjct  112  RELPE-VCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  194  LLGMMARYTRADVIVVGLIGERGREVQDFIDNILGAEGLRRSVVVAAPADNSPLQRLQGA  253
            LL+M+     AD  V+ LIGERGREV++FID  L+ E  +R V+V A +D ++L+R+++ 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  254  AYATRLAEDFRDAGRDVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPRLVE  313
              AT +AE FRD G+ V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LPRL+E
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  314  RTGNGPRGGGSITAFYTVLSEGDDQQDPIADSARAILDGHIVLSRALAESGHYPAIDIEA  373
            RTG G +  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR LAE GHYPAID+ A
Sbjct  291  RTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLA  348

Query  374  SISRAMTAIVDDAQQRKAQQFKQSLSRYQRNRDLISVGAYAPGHDPQLDRAVNLYPQLER  433
            ++SR    +  + +++ A  +++ L+ YQ    LI +G Y  G D + D+A++ YP++  
Sbjct  349  TLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  434  FLQQRIDERAGIEETLKALNAVIP  457
            FL+Q  DE  G E  +  L+ ++ 
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

883) fliI in NC_021149


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (992),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 197/444 (45%), Positives = 290/444 (66%), Gaps = 20/444 (4%)

Query  17   LQR-RLDELPP--YRRSGRIVRATGMVLEAVGLDIPLGGVCRIELAAQPGGEARQAEAEV  73
            +QR RL   PP  Y R GRI   ++ +L+A   ++ +G +C I    +PG E     AEV
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL----AEV  57

Query  74   VGFAGERLFLMPLEEIAGLRPGARVFPLGEGGDALGARRFPLGERLLGRVVDSSGQpldg  133
            VG+ G + +L P+   AGL+ G +V +L         ++ P+GE LLGRV+D+ G+PLDG
Sbjct  58   VGINGSKALLSPFTSTAGLHCGQQVMALRR------RHQVPVGEALLGRVIDGFGRPLDG  111

Query  134  lgpldgVHHASLHTPPLNPLHRAPIDRQIDVGIRAINGLLSVGRGQRMGLFAGSGVGKSV  193
                + V     ++ P  ++ R PI + +  GIRAI+++ + G GQR+G+F+++GVGKS 
Sbjct  112  RELPE-VCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  194  LLGMMARYTRADVIVVGLIGERGREVQDFIDNILGAEGLRRSVVVAAPADNSPLQRLQGA  253
            LL+M+     AD  V+ LIGERGREV++FID  L+ E  +R V+V A +D ++L+R+++ 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  254  AYATRLAEDFRDAGRDVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPRLVE  313
              AT +AE FRD G+ V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LPRL+E
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  314  RTGNGPRGGGSITAFYTVLSEGDDQQDPIADSARAILDGHIVLSRALAESGHYPAIDIEA  373
            RTG G +  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR LAE GHYPAID+ A
Sbjct  291  RTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLA  348

Query  374  SISRAMTAIVDDAQQRKAQQFKQSLSRYQRNRDLISVGAYAPGHDPQLDRAVNLYPQLER  433
            ++SR    +  + +++ A  +++ L+ YQ    LI +G Y  G D + D+A++ YP++  
Sbjct  349  TLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  434  FLQQRIDERAGIEETLKALNAVIP  457
            FL+Q  DE  G E  +  L+ ++ 
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

884) fliI in NC_012560


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (992),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 197/444 (45%), Positives = 290/444 (66%), Gaps = 20/444 (4%)

Query  17   LQR-RLDELPP--YRRSGRIVRATGMVLEAVGLDIPLGGVCRIELAAQPGGEARQAEAEV  73
            +QR RL   PP  Y R GRI   ++ +L+A   ++ +G +C I    +PG E     AEV
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCI----KPGEEL----AEV  57

Query  74   VGFAGERLFLMPLEEIAGLRPGARVFPLGEGGDALGARRFPLGERLLGRVVDSSGQpldg  133
            VG+ G + +L P+   AGL+ G +V +L         ++ P+GE LLGRV+D+ G+PLDG
Sbjct  58   VGINGSKALLSPFTSTAGLHCGQQVMALRR------RHQVPVGEALLGRVIDGFGRPLDG  111

Query  134  lgpldgVHHASLHTPPLNPLHRAPIDRQIDVGIRAINGLLSVGRGQRMGLFAGSGVGKSV  193
                + V     ++ P  ++ R PI + +  GIRAI+++ + G GQR+G+F+++GVGKS 
Sbjct  112  RELPE-VCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  194  LLGMMARYTRADVIVVGLIGERGREVQDFIDNILGAEGLRRSVVVAAPADNSPLQRLQGA  253
            LL+M+     AD  V+ LIGERGREV++FID  L+ E  +R V+V A +D ++L+R+++ 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  254  AYATRLAEDFRDAGRDVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPRLVE  313
              AT +AE FRD G+ V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LPRL+E
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  314  RTGNGPRGGGSITAFYTVLSEGDDQQDPIADSARAILDGHIVLSRALAESGHYPAIDIEA  373
            RTG G +  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR LAE GHYPAID+ A
Sbjct  291  RTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLA  348

Query  374  SISRAMTAIVDDAQQRKAQQFKQSLSRYQRNRDLISVGAYAPGHDPQLDRAVNLYPQLER  433
            ++SR    +  + +++ A  +++ L+ YQ    LI +G Y  G D + D+A++ YP++  
Sbjct  349  TLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  434  FLQQRIDERAGIEETLKALNAVIP  457
            FL+Q  DE  G E  +  L+ ++ 
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

885) lfiI in NC_017626


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (992),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 172/395 (44%), Positives = 263/395 (67%), Gaps = 5/395 (1%)

Query  40   SLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGE  99
            ++  G+LC I ++++    A+ VG+N   + L PF    GL  G +V +  + H++ +GE
Sbjct  39   GVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGE  95

Query  100  SWLGRVVNGLGEPLDGKGRLNGNDllpplppSVNPLTRRSVDEPLDVGVKAINGLLTIGK  159
            + LGRV++G+G PLDG+  L         + +  ++ R+++ +PL  G++AI+++ T G 
Sbjct  96   ALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGE  154

Query  160  GQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIV  219
            GQRVG+ +++GVGKS LL+M+     AD  V+ LIGERGREV+EFID +L+ +   + ++
Sbjct  155  GQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVI  214

Query  220  VVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPAT  279
            VVA +D ++L R++A  +  +IA  FRD G +V+LL DSLTRYA A REIAL+ GE + +
Sbjct  215  VVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVS  274

Query  280  KGYPPSAFGMIPKLVESAGNSESSGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLTR  339
              YPP+ F+ +P+L+E +G +E  GS+TA+YTVL EGDD ++P+ D  R++LDGHIVL+R
Sbjct  275  GEYPPGVFSALPRLLERTGMGE-KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  340  KLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYMEIKPLIPLGGYVAGAD  399
            +LAE GHYPAID+  ++SR    VTS EH+Q A  L++  A Y E+  LI +G Y  G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  400  ASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQ  434
            +  DKA+  +P I  FLRQ   E  + EL+  +L+
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

886) fliI in NC_017644


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (992),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 175/411 (43%), Positives = 271/411 (66%), Gaps = 5/411 (1%)

Query  24   GRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAG  83
            GR+  +++ LL++    +  G+LC I ++++    A+ VG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  84   ARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDllpplppSVNPLTRRSVDEP  143
             +V +  + H++ +GE+ LGRV++G+G PLDG+  L         + +  ++ R+++ +P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  144  LDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKE  203
            L  G++AI+++ T G GQRVG+ +++GVGKS LL+M+     AD  V+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  204  FIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYA  263
            FID +L+ +   + ++VVA +D ++L R++A  +  +IA  FRD G +V+LL DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  264  MAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESSGSMTAIYTVLAEGDDQQDPI  323
             A REIAL+ GE + +  YPP+ F+ +P+L+E +G +E  GS+TA+YTVL EGDD ++P+
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGSITAFYTVLVEGDDMNEPL  317

Query  324  VDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTRLEHQQSARALKQNYAAYM  383
             D  R++LDGHIVL+R+LAE GHYPAID+  ++SR    VT  EH+Q A  L++  A Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  384  EIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQ  434
            E+  LI +G Y  G D+  DKA+  +P I  FLRQ   E  + EL+  +L+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

887) fliI in NC_007778


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (991),  Expect = 4e-72, Method: Compositional matrix adjust.
 Identities = 172/380 (46%), Positives = 261/380 (69%), Gaps = 3/380 (0%)

Query  56   EVIGFTGNNAMVMPFAGLEGVRRGCRAVIANSAAQVRPSQAWLGRVINALGEPIDGKGPL  115
            EV+G+ G++A++ PF++  G++ G + +      QV  ++A LGRVI+++G P+DG+  L
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-L  114

Query  116  PQGPSPMRFRNTPPPAHSRKRVGAPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLS  175
            P+      +   PPPA  R+ +  PL  G+RA+++  TC  GQR+GIF+++GVGKS LL+
Sbjct  115  PEVCW-KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  176  MLARNVDAAVSVIGLIGERGREVQEFLQDDLGEEGMARSVVVVATSDEPALMRRQAAYLT  235
            ML    DA  +V+ LIGERGREV+EF++  L+EE   R V+VVATSD PAL R +A +++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  236  LSIAEYFRDEDKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAG  295
             +IAE+FRD++K V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  296  PGLGEGTISGIFTVLVDGDDHNEPVADAVRGILDGHIVMQRSIAERGRFPAINVLKSVSR  355
             G   G+I++++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG++PAI+VL ++SR
Sbjct  294  MG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  356  TMPRSADPAYLPVIKRARQVMATYADMEELIRLGAYRPGSSAEVDEAVRLHEPLEEFLRQ  415
              P  +      +    R+ +A Y ++E LIR+G Y+ G  ++ D A+     +  FLRQ
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  416  GKDEATSLSAGYLQLEQILK  435
            +KDE  +      +L+QIL 
Sbjct  413  SKDEVCGPELLIEKLHQILT  432

888) spaI in NC_015761


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (991),  Expect = 4e-72, Method: Compositional matrix adjust.
 Identities = 174/385 (46%), Positives = 272/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLTRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTSEVAPISEERVIDVAPPSYASRVGVH  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATGKGSITAFYTVLLESEDEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G   KGSITAFYTVL+E++D  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDILKSVSRVFGQVTTATHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAID+L ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

889) A464_2918 in NC_021870


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (991),  Expect = 4e-72, Method: Compositional matrix adjust.
 Identities = 174/385 (46%), Positives = 272/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLTRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTSEVAPISEERVIDVAPPSYASRVGVH  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATGKGSITAFYTVLLESEDEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G   KGSITAFYTVL+E++D  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDILKSVSRVFGQVTTATHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAID+L ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

890) N646_3251 in NC_022359


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (991),  Expect = 4e-72, Method: Compositional matrix adjust.
 Identities = 166/365 (46%), Positives = 258/365 (71%), Gaps = 3/365 (0%)

Query  66   AQVVGFEHTIAYLMPIRRLGGLFAGAKVIPLDGDSTVQLSSQWLGRVLNGLGEPLDDGAP  125
            A+VVG++ + A L P+   +GL  G +V++L     V ++   LGRV++G+G PLD G  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRE  113

Query  126  LKGGDRVSLEPKPINPLKRRPVDTPLNVGVRAINGLLTVGKGQRIGLMAGSGVGKSVLMG  185
            L    +   ++ P  ++ R+P+  PL  G+RAI+++ T G GQR+G+ +++GVGKS L++
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  186  MITKNTEADVIVVGLIGERGREVREFIERNLTPEARKKaiiiaaPADESPLMRLRATLLC  245
            M+ +  +AD  V+ LIGERGREVREFI+  L+ E+RK+ +I+ A +D ++L R+RA ++ 
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  246  HRVSEYFRDQGKDVLLLMDSLTRYAMAQREIALSLGEPPASRGYPPSVFSVLPQLLERAG  305
              ++E+FRD+GK V+LL DSLTRYA A REIAL+ GE + S  YPP+VFS LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  306  NSENQHGSLTAIYTVLAEGDDQQDPVVDSARAILDGHVVLSRQLAEQGHYPAIDINASIS  365
             +E+  GS+TA+YTVL EGDD ++P+ D  R++LDGH+VLSR+LAE+GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  366  RCMNTCTQDAHSTIANNFRQMYSNYLQVKELLPLGGYQPGQDPELDQSVAMYPNLRAYLQ  425
            R     T + H  +A  +R+  + Y +V  L+ +G YQ G D + D+++  YP++ ++L+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  426  QAANE  430
            Q+ +E
Sbjct  412  QSKDE  416

891) Tmz1t_2903 in NC_011662


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (991),  Expect = 4e-72, Method: Compositional matrix adjust.
 Identities = 176/399 (45%), Positives = 272/399 (69%), Gaps = 10/399 (2%)

Query  69   FNGDKLYMMPTDD---VFGLAPGARVLPMEVGVPRLVPGKRIGPRRRAADRAKHLPVGDA  125
            F G+   + P ++   V G+  +  +L+   + + L  G+++ + RR      ++PVG+A
Sbjct  41   FMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRR----HQVPVGEA  96

Query  126  LLGRVVDGAGRPLDGQGPLHTQETRSLQGRAINPLARAPIAQPLDVGVRAINALLTVGRG  185
            LLGRV+DG GRPLDG+  L     +  ++ +  ++ R PI+QPL  G+RAI+++ T G G
Sbjct  97   LLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  186  QRLGLFAGSGVGKSVLIGMMARYTEAEVIVVGLIGERGREVKEFIDHSLGPEGLARSVVV  245
            QR+G+F+++GVGKS L++M+    +A+  V+ LIGERGREV+EFID +L+ E   R V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  246  AAPADTSPLMRMQGAAYATTVAEYFRDQGKQVLLIMDSLTRYAMAQREIALAIGEPPVTR  305
             A +D ++L R+++   ATT+AE+FRD+GK+V+L+ DSLTRYA A REIALA GE +V+ 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  306  GYPPSVFARLPALVERAGNGPEGGGSITAFYTVLAEGDDQQDPIADAARAILDGHFVLSR  365
             YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR
Sbjct  276  EYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  366  NLADQGHYPAIDIEQSISRAMHNLVGDDHFNVVRQFKQFFSRYQRSRDLIAVGAYQPGGD  425
             LA++GHYPAID+  ++SR    + +++H ++   +++ ++ YQ    LI +G YQ G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  426  PLLDMAVKLYPRLEAFLQQGIQEHETYEGALQKLAQVFG  464
               D A+  YP + +FL+Q+ +E    E  ++KL Q++ 
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

892) Daro_0770 in NC_007298


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (990),  Expect = 5e-72, Method: Compositional matrix adjust.
 Identities = 187/397 (48%), Positives = 256/397 (65%), Gaps = 26/397 (6%)

Query  57   LGSTCKIYPSSGIPIEAEVVGFAGEKLYLMPSDDVYGLAPGSKVVAVESPNMLPKLGGPP  116
            +G  C I P+  +   AEVVG+ G K  L P     GL  G +V+A+             
Sbjct  42   MGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMAL-------------  85

Query  117  PFRRRAIDRAKQGPVGEELLGRVLDGVGRPLDNKGPLIAAETRPLQSRPINPMSRAAIHQ  176
              RRR      Q PVGE LLGRV+DG GRPLD +  L     +  ++ P  +M R +I Q
Sbjct  86   --RRR-----HQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQ  137

Query  177  PLDVGIRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTEAEVIVVGLIGERGREVK  236
            PL  GIRAI+++ T G GQR+G+F+++GVGKS LL+M+    +A+  V+ LIGERGREV+
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  237  EFIEQILGEEGMRRSVVVAAPADTGPLMRLQGAAYATTIAEYFRDQGKHVLLIMDSLTRY  296
            EFI+  L+EE  +R V+V A +D  +L R+++   ATTIAE+FRD+GK+V+L+ DSLTRY
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  297  AMAQREIALAIGEPPATRGYPPSVFARLPQLVERAGNGQEGGGSITAFYTVLAEGDDQQD  356
            A A REIALA GE + +  YPP+VF+ LP+L+ER+G G+   GSITAFYTVL EGDD ++
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNE  315

Query  357  PIADSARAILDGHIVLSRTLADAGHYPAIDIEQSISRAMVNLIDAPHLDQIRKFKVLFAR  416
            P+AD  R++LDGHIVLSR LA+ GHYPAID+  ++SR    +    H +    ++  +A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  417  YQRSRDLISVGAYAPGSDPVLDQAISLYPRMESFLQQ  453
            YQ    LI +G Y  G D   D+AI  YP + +FL+Q
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

893) fliI in NC_006368


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (990),  Expect = 5e-72, Method: Compositional matrix adjust.
 Identities = 174/385 (46%), Positives = 265/385 (69%), Gaps = 8/385 (2%)

Query  46   VGARCLVKINDEHSVQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVGHQLL  105
            +G  C +K  +E    AEVVG++     L ++    G+  G ++++  R  QV+VG+ LL
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  106  GRILNGSGMFIDDGPPSEMV-ETYPLIGQVINPLKRAPIEVPLDVGIRAINGLLTVGRGQ  164
            GR+++G G  +D+   +E+    Y  +     ++ R PI  PL  GIRAI+++ T G GQ
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAMPP--PAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLQGLKRAVVVA  224
            R+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+ +  KR V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEAPATKG  284
            A +D ++L R+++  VAT+IAE+FRD+GK+V+LL DSLTR+A+A REIAL+ GE++ +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRA  344
            YPP+VF+ LP+L+ER+G G    GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR 
Sbjct  277  YPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYAKGSDP  404
            LAE+G+YPAID+ A++SRV   V S++H +   ++++ L++Y+    LI +G Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  LVDKAILAVNKLKDYLAQGMDEQVG  429
              DKAI +   +  +L Q+ DE  G
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCG  419

894) fliI in NC_020796


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (989),  Expect = 6e-72, Method: Compositional matrix adjust.
 Identities = 179/366 (49%), Positives = 252/366 (69%), Gaps = 7/366 (1%)

Query  67   AEVVGFNGRQLFLMPLEEVEGIVPGARVWAPAAALNSGKQLPLGPALLGRVLDGSARPLD  126
            AEVVG+NG + +L P+    G+  G +V     AL    Q+P+G ALLGRV+DG +RPLD
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV----MALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  127  GLPPPDESDHGGLSSQPFNPLQRTPITQVLDVGVRAINALLTVGRGQRMGLFAGSGVGKS  186
            G   P+     +  + P  ++ R PITQ L  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  GRELPEVC-WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  187  VLLGMMARYTQADVIVVGLIGERGREVKDFIENILGEEGRQRSVVIAAPADVSPLLRMQG  246
             LL+M+    +AD  V+ LIGERGREV++FI+  L+EE R+R V++ A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  247  AAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALV  306
               AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  307  ERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRRLAEAGHYPAIDIE  366
            ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ 
Sbjct  290  ERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  367  ASISRAMTSLIDEAHYARVRSFKQLLSSYQRNRDLISVGAYARGSDPLLDQAIALYPQLE  426
            A++SR    +  + H      +++ L+ YQ    LI +G Y RG D   D+AI  YP++ 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  427  AFLQQG  432
            +FL+Q+
Sbjct  408  TFLRQS  413

895) fliI in NC_020127


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (989),  Expect = 6e-72, Method: Compositional matrix adjust.
 Identities = 173/383 (46%), Positives = 265/383 (70%), Gaps = 9/383 (2%)

Query  41   LGAVCHMLSGNDEHGEAIAAEVVGFREGNLLFMPYGEMRGIQPGSLIRNTSLPPVFPVGK  100
            +G +C + +G++       AEVVG+  ++ L+ P+    G++ G  +         PVG 
Sbjct  42   MGELCCIKPGEE------LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGE  95

Query  101  EILGHAFNAFGEPLSGGNPIIPEKLIPLYSN-PPSPLERPRIKDPLDVGVRAINSMITLG  159
             +LG+ +++FG PL G +  +PE     Y   PP+++ R  I +PL  G+RAI+S+ T G
Sbjct  96   ALLGRVIDGFGRPLDGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCG  153

Query  160  KGQRVGIMAGSGVGKSTLMGMMARYTSADVNVIGLIGERGREVVEFMEKELGPEGMTRSV  219
             GQRVGI +++GVGKSTL++M+     AD NV+ LIGERGREV EF++  L+ E   R V
Sbjct  154  EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCV  213

Query  220  LIIATSDQSPLVRMRaayaatavaEYFRDQGKDVLLMMDSVTRFAMAAREIGLAVGEPPT  279
            +++ATSD+++L R+RA + AT++AE+FRD+GK V+L+ DS+TR+A AAREI+LA GE + 
Sbjct  214  IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAV  273

Query  280  TKGYTPTVFAQLPKLLERTGRSNTGTITGIYTVLVDGDDFNEPIADAVRSILDGHIVLTR  339
            +  Y P VF+ LP+LLERTG ++ G+IT++YTVLV+GDD NEP+AD VRS+LDGHIVL+R
Sbjct  274  SGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  340  DLADQDHFPAIDVLRSISRLRSDICTPEQVQDGRIVGRYMATFRKAEDMINIGAYIQGSN  399
             LA+++H+PAIDVL ++SR+ + + + E+ Q + I+ R +A ++  E +I IG Y +G +
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  400  EEIDKAITMHGPIESFLKQNISD  422
             + DKAI     I +FL+Q+  +
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDE  416

896) fliI in NC_008011


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  265 bits (989),  Expect = 6e-72, Method: Compositional matrix adjust.
 Identities = 173/383 (46%), Positives = 265/383 (70%), Gaps = 9/383 (2%)

Query  41   LGAVCHMLSGNDEHGEAIAAEVVGFREGNLLFMPYGEMRGIQPGSLIRNTSLPPVFPVGK  100
            +G +C + +G++       AEVVG+  ++ L+ P+    G++ G  +         PVG 
Sbjct  42   MGELCCIKPGEE------LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGE  95

Query  101  EILGHAFNAFGEPLSGGNPIIPEKLIPLYSN-PPSPLERPRIKDPLDVGVRAINSMITLG  159
             +LG+ +++FG PL G +  +PE     Y   PP+++ R  I +PL  G+RAI+S+ T G
Sbjct  96   ALLGRVIDGFGRPLDGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCG  153

Query  160  KGQRVGIMAGSGVGKSTLMGMMARYTSADVNVIGLIGERGREVVEFMEKELGPEGMTRSV  219
             GQRVGI +++GVGKSTL++M+     AD NV+ LIGERGREV EF++  L+ E   R V
Sbjct  154  EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCV  213

Query  220  LIIATSDQSPLVRMRaayaatavaEYFRDQGKDVLLMMDSVTRFAMAAREIGLAVGEPPT  279
            +++ATSD+++L R+RA + AT++AE+FRD+GK V+L+ DS+TR+A AAREI+LA GE + 
Sbjct  214  IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAV  273

Query  280  TKGYTPTVFAQLPKLLERTGRSNTGTITGIYTVLVDGDDFNEPIADAVRSILDGHIVLTR  339
            +  Y P VF+ LP+LLERTG ++ G+IT++YTVLV+GDD NEP+AD VRS+LDGHIVL+R
Sbjct  274  SGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  340  DLADQDHFPAIDVLRSISRLRSDICTPEQVQDGRIVGRYMATFRKAEDMINIGAYIQGSN  399
             LA+++H+PAIDVL ++SR+ + + + E+ Q + I+ R +A ++  E +I IG Y +G +
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  400  EEIDKAITMHGPIESFLKQNISD  422
             + DKAI     I +FL+Q+  +
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDE  416

897) Daud_1762 in NC_010424


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (986),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 196/390 (51%), Positives = 274/390 (71%), Gaps = 11/390 (2%)

Query  45   FIGEICEVYVPGEIQPVRGEVVGFRGGTSLLMPLGELRGIRPGCRVEPLGRALTVRVGEH  104
            F+GE+C +    E+    +EVVG+ G+ +LL P+    G++ G +V +L R   V VGE 
Sbjct  41   FMGELCCIKPGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEA  96

Query  105  LLGQVVNGLGYPLANGGDTRNGTRPDGAEEYPVHNAPPDPLSRRRIDRPLETGVRAIDGF  164
            LLG+V++G+G PL +G +  +  +     +Y  +  PP ++ R+ I +PL TG+RAID+ 
Sbjct  97   LLGRVIDGFGRPL-DGRELPEVCW----KDY--DAMPPPAMVRQPITQPLMTGIRAIDSV  149

Query  165  LTCGRGQRlgvfsgsgvgksvllgMLCRHCSADVNVVALVGERGREVKDFIERDLGPESL  224
             TCG GQR+G+FS++GVGKS LL+MLC    AD NV+ L+GERGREV++FI+  L+ E+ 
Sbjct  150  ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETR  209

Query  225  ARSVVVVATSDQPALIRLRAAMVATAIAEYFRDRGKDVLFLMDSVTRFALAQREVGLAVG  284
             R V+VVATSD+PAL R+RA  VAT+IAE+FRD GK V++L DS+TR+A A RE++LA G
Sbjct  210  KRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAG  269

Query  285  EPPTTRGYTPSVFALLPKLLERAGTSPAGSITGFYTVLVEGDDLQEPVADAVRSILDGHI  344
            E + +  Y P+VF+ LP+LLER+G +  GSIT+FYTVLVEGDD++EP+AD VRS+LDGHI
Sbjct  270  ETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  345  VLDRELAAKNHYPAIDVLQSVSRLMPDITAPEHQrcaaklrrllaaFKQAEDLVNIGAYV  404
            VL R LA + HYPAIDVL ++SR+ P +T+ EH++ AA LRR LA +++ E L+ IG Y 
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  405  SGSNPLVDEALAKHEAIMEFLRQDHTEFGG  434
             G +   D A+     I  FLRQ   E  G
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

898) C427_3666 in NC_020514


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (986),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 188/383 (50%), Positives = 269/383 (71%), Gaps = 9/383 (2%)

Query  44   VGSQCLIQTMEGEIEAEVVGFAENITYLMPTEAVKGIVPGSRVQPLNREQGLAVGMELLG  103
            +G  C I+   GE  AEVVG+  + + L P  +  G+  G +V +L R + ++VG  LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  104  RVVDGNGQPLDG--LGPIKAEKRVPLSKPPMNPLLRKPIKQPLDVGVRAINSIVTVGLGQ  161
            RV+DG G+PLDG  L  +      +++ P+M   +R+PI QPL  G+RAI+S+ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPPAM---VRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  162  RMGLFAGSGVGKSVLMGMMTRGTAADvvvvglvgergrevKEFIQDILGEEERAKSVVVA  221
            R+G+F+++GVGKS L++M+  +  AD  V+ L+GERGREV+EFI+  L+EE R + V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  222  APADTSPLMRLKGCETAVTIAEYFRDKGLNVLLLIDSLTRYAMAQREIALAVGEPPATKG  281
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTRYA A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  282  YPPSVFARLPALVERAGNGSENQGSITAFYTVLTEGDDLQDPIADAARAILDGHIVLSRS  341
            YPP+VF+ LP L+ER+G G  ++GSITAFYTVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  342  LADSGHYPAIDIEASISRVMPMVVSEEHVQGARRIRQVYSNYQRNRDLISIGAYSKGTDP  401
            LA+ GHYPAID+ A++SRV P+V S+EH Q A  +R+  + YQ    LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  402  RIDLAINAEPAINAFLQQGVQQI  424
              D AI++ P I +FL+Q+ +++
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEV  417

899) fliI in NC_014246


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (985),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 170/363 (47%), Positives = 259/363 (72%), Gaps = 1/363 (0%)

Query  58   AEVVALDAGIASCMPLDNLDGLRVGSPVRGTGLPATVPVGPALLGRVIDAAGRPLDGKGP  117
            AEVV+++++ A   P+ +  GL+ G  V +      VPVG ALLGRVID+ GRPLDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  118  IYAADRVPIHGAAPNALERARIDMPVAMGVRVLDTLVTLGRGQRIGLFAGSGVGKSTLMS  177
            +    +   ++ +P A+ R  I  P+  G+R +D++ T G GQR+G+F+++GVGKSTL++
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  178  MIARGTNAEVCVIALVGERGREVREFleddlgeeglSRSVVVVATSDESPMLRKRAAFTA  237
            M+  + +A+  V+ L+GERGREVREF++  L+EE   R V+VVATSD +++ R RA F A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  238  TRVAEYYRDAGRHVLLMMDSLTRTCMAQREIGLSVGEPPATRGYPPSTFSMMAQLLERAG  297
            T +AE++RD G++V+L+ DSLTR   A REI+L+ GE + +  YPP+ FS +++LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  298  SGAIGSVTGIYTVLVDGDDHNEPIADQARSILDGHVVLDRKLAVAGHYPAIDALGSISRV  357
             G  GS+T++YTVLV+GDD NEP+AD+ RS+LDGH+VL R+LA  GHYPAID L+++SRV
Sbjct  294  MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRV  353

Query  358  ASKVTTREQREAATALRQIMGAKRSVQDLLDVGAYQAGTNPEVDTAVKYDAEIEAFLTQK  417
             + VT++E+R+ A+ LR+ ++  + V+ L+ +G YQ G + + D A+   ++I +FL Q 
Sbjct  354  FPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

Query  418  TDE  420
             DE
Sbjct  414  KDE  416

900) fliI in NC_006369


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (985),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 174/382 (46%), Positives = 262/382 (69%), Gaps = 8/382 (2%)

Query  46   IGARCLVKINDEHSVQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVNVGHQLL  105
            +G  C +K  +E    AEVVG++     L ++    G+  G ++++  R  QV VG+ LL
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  106  GRILNGSGMFIDDGPPGEMV-ETYPLIGQVINPLKRAPIEVPLDVGIRAINGLLTVGRGQ  164
            GR+++G G  +D+    E+    Y  +     ++ R PI  PL  GIRAI+++ T G GQ
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAMPP--PAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLKRAVVVA  224
            R+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+ E  KR V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEAPATKG  284
            A +D ++L R+++  VAT+IAE+FRD+GK+V+LL DSLTR+A+A REIAL+ GE++ +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPKLVERAGNGTAGGGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRA  344
            YPP+VF+ LP+L+ER+G G    GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR 
Sbjct  277  YPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYAKGSDP  404
            LAE+G+YPAID+ A++SRV   V S++H +   ++++ L++Y+    LI +G Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  LVDKAILAVNKLKDYLAQGMDE  426
              DKAI +   +  +L Q+ DE
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

901) fliI2 in NC_016830


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (985),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 191/422 (46%), Positives = 273/422 (65%), Gaps = 25/422 (5%)

Query  26   ANYLRSGRITRATGMVLEAVGLRLP---LGGACRIELAAPPHLRAQPVYAEAEVVGFAGD  82
              Y R GRI   ++ +L+A   +LP   +G  C I          +P    AEVVG+ G 
Sbjct  17   DGYCRWGRIQDVSATLLNA---WLPGVFMGELCCI----------KPGEELAEVVGINGS  63

Query  83   ILYLMPLEDVHGLQAGARVFADDCLDGTAGARYFPLGMSLLGRVLDSSGQPLDGRGPLLG  142
               L P+    GL+ G +V A   L         P+G +LLGRV+D+ G+PLDGR  L  
Sbjct  64   KALLSPFTSTAGLHCGQQVMA---LRRRHQV---PVGEALLGRVIDGFGRPLDGRE-LPE  116

Query  143  AHHASLHTQPLNPLKRAPIDRQIDVGIRAINALLCVGRGQRLGLFAGSGVGKSVLLGMMA  202
                  ++ P  ++ R PI + +  GIRAI+++   G GQR+G+F+++GVGKS LL+M+ 
Sbjct  117  VCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC  176

Query  203  RYTQADVIVVGLIGERGREVQDFIDNILGEEGLRRSVVVAAPADTSPLQRLQGAVYATRL  262
               +AD  V+ LIGERGREV++FID  L+EE  +R V+V A +D ++L+R+++   AT +
Sbjct  177  NAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTI  236

Query  263  AEDFRDQGKDVLLIMDSLTRYAMAQREIALAVGEPPATKGYPPSVFAKLPKLVERTGNGP  322
            AE FRD+GK V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP+L+ERTG G 
Sbjct  237  AEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG-  295

Query  323  PGGGSITAFYTVLSEGDDQQDPIADAARAILDGHIVLSRHLAESGHYPAIDIEASISRAM  382
               GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR+LAE GHYPAID+ A++SR  
Sbjct  296  -EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVF  354

Query  383  TAIVSESQQRKAQQLKQTLSRYQRNRDLISVGAYAPGHDAQLDRAVGMYPHIERFLQQRI  442
              + S+ +++ A  L++ L+ YQ    LI +G Y  G D++ D+A++ YP+I  FL+Q  
Sbjct  355  PVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

Query  443  HE  444
            +E
Sbjct  415  DE  416

902) fliI in NC_017575


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (986),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 182/403 (46%), Positives = 262/403 (66%), Gaps = 24/403 (5%)

Query  79   LAEVVGFAEERAFLMPQTDLVGVVPGARVFPLEPQHLPLDAADPTIAHSKFLPVGPRLLG  138
            LAEVVG+   +A+L P T   G+  G +V +L  +H               +PVG  LLG
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQ--------------VPVGEALLG  99

Query  139  RVVDANGEPLDGKGPLGTHEELAWGSLSPAPLNPLKRKPIEHVLDVGVRAINGLLTVGQG  198
            RV+D+ G PLDG+       E+ W    + P  ++ R+PI + L  G+RAI+++ T G+G
Sbjct  100  RVIDGFGRPLDGRE----LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  199  QRLGLFAGSGVGKSVLLGMMARYTQADVVVVGLIGERGREVKEFIDEILGDEGLARSAVV  258
            QR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFID  L++E   R  +V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  259  AAPADNSPLMRLQGAAYAHTIAEYFRDRGCNVLLIVDSLTRYAMAQREIALAIGEPPATK  318
             A +D ++L R+++   A TIAE+FRD G  V+L+ DSLTRYA A REIALA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  319  GYPPSAFAKLPALVERAGNGMVDATGRGGSITAFYTVLAEGDDQQDPIADAARAILDGHF  378
             YPP+ F+ LP L+ER+G       G  GSITAFYTVL EGDD ++P+AD  R++LDGH+
Sbjct  276  EYPPGVFSALPRLLERTG------MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  379  VLSRKLAEQGHYPAIDIEQSISRVMSAIVQREQLDAARRFKQLYARYQRNRDLIAVGAYA  438
            VLSR+LAE+GHYPAID+  ++SRV + +  +E+ + A  +++  A YQ    LI +G Y 
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  439  RGSDPMTDQAIARYPDMEGFLQQGMFENESRARTLEKMNAVLS  481
            RG D  TD+AI  YPD+  FL+Q+  E  +    +EK++ +L+
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

903) SARI_00079 in NC_010067


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (985),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 174/385 (46%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLTRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTTEVAPISEERVIDVAPPPYASRVGVH  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PPP   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATGDGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTATHAKQASSVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

904) Rpic12D_3651 in NC_012857


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (985),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 181/403 (45%), Positives = 266/403 (67%), Gaps = 24/403 (5%)

Query  77   LAEVVGFAEERAFLMPQTDLVGVVPGARVFPLEAQHLPADAADPTISHSKFLPVGPRLLG  136
            LAEVVG+   +A+L P T   G+  G +V +L  +H               +PVG  LLG
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQ--------------VPVGEALLG  99

Query  137  RVVDANGEPLDGKGPLGNPDELAWGTLAPAPLNPLKRKPIENVMDVGVRAINGLLTVGQG  196
            RV+D+ G PLDG+    +  E+ W    + P  ++ R+PI + +  G+RAI+++ T G+G
Sbjct  100  RVIDGFGRPLDGR----ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  197  QRLGLFAGSGVGKSVLLGMMARYTQADVVVVGLIGERGREVKEFIDEILGDEGLARSAVV  256
            QR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFID  L++E   R  +V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  257  AAPADTSPLMRLQGAAYAHTIAEYFRDRGCNVLLIVDSLTRYAMAQREIALAIGEPPATK  316
             A +D ++L R+++   A TIAE+FRD G  V+L+ DSLTRYA A REIALA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  317  GYPPSAFAKLPALVERAGNGMVDADGRGGSITAFYTVLAEGDDQQDPIADAARAILDGHF  376
             YPP+ F+ LP L+ER+G       G  GSITAFYTVL EGDD ++P+AD  R++LDGH+
Sbjct  276  EYPPGVFSALPRLLERTGM------GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  377  VLSRKLAEQGHYPAIDIEQSISRVMSAIVPREQLDTARRFKQLYARYQRNRDLIAVGAYA  436
            VLSR+LAE+GHYPAID+  ++SRV + + ++E+ + A  +++  A YQ    LI +G Y 
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  437  RGSDPVTDQAIARYPDMEAFLQQGMFENESREHTLQKMQGVLA  479
            RG D  TD+AI  YPD+ +FL+Q+  E  + E  ++K++ +L+
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

905) Rpic_4728 in NC_010678


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (985),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 181/403 (45%), Positives = 266/403 (67%), Gaps = 24/403 (5%)

Query  77   LAEVVGFAEERAFLMPQTDLVGVVPGARVFPLEAQHLPADAADPTISHSKFLPVGPRLLG  136
            LAEVVG+   +A+L P T   G+  G +V +L  +H               +PVG  LLG
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQ--------------VPVGEALLG  99

Query  137  RVVDANGEPLDGKGPLGNPDELAWGTLAPAPLNPLKRKPIENVMDVGVRAINGLLTVGQG  196
            RV+D+ G PLDG+    +  E+ W    + P  ++ R+PI + +  G+RAI+++ T G+G
Sbjct  100  RVIDGFGRPLDGR----ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  197  QRLGLFAGSGVGKSVLLGMMARYTQADVVVVGLIGERGREVKEFIDEILGDEGLARSAVV  256
            QR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFID  L++E   R  +V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  257  AAPADTSPLMRLQGAAYAHTIAEYFRDRGCNVLLIVDSLTRYAMAQREIALAIGEPPATK  316
             A +D ++L R+++   A TIAE+FRD G  V+L+ DSLTRYA A REIALA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  317  GYPPSAFAKLPALVERAGNGMVDADGRGGSITAFYTVLAEGDDQQDPIADAARAILDGHF  376
             YPP+ F+ LP L+ER+G       G  GSITAFYTVL EGDD ++P+AD  R++LDGH+
Sbjct  276  EYPPGVFSALPRLLERTGM------GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  377  VLSRKLAEQGHYPAIDIEQSISRVMSAIVPREQLDTARRFKQLYARYQRNRDLIAVGAYA  436
            VLSR+LAE+GHYPAID+  ++SRV + + ++E+ + A  +++  A YQ    LI +G Y 
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  437  RGSDPVTDQAIARYPDMEAFLQQGMFENESREHTLQKMQGVLA  479
            RG D  TD+AI  YPD+ +FL+Q+  E  + E  ++K++ +L+
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

906) SSPA2566 in NC_011147


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (985),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 272/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFAPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++  + E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

907) spaI in NC_006511


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (985),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 272/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFAPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++  + E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

908) Atc_1487 in NC_015850


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (987),  Expect = 7e-72, Method: Compositional matrix adjust.
 Identities = 179/365 (50%), Positives = 256/365 (71%), Gaps = 3/365 (0%)

Query  31   AEVVGFHGERLQLMAAGDTHGVALGARVQLLPGEAQGSASPALLGRVIDGLGQPLDGGDA  90
            AEVVG++G +  L +   T G+  G +V  L    Q + + ALLGRVIDG+G+PLDG + 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  91   VPNRTPIPLMGTPLNPMNRMPIRHPLDVGVRSINALFTVGRGARMGLFAGSGVGKSVLLG  150
            +P+       + P  +M R PI +PL  G+R+I+++ T G G R+G+F+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  151  MMARNTEADVIVVGLIGERGREVKEFIEDILGEAGLRRavvvaapadapaLTRIRGAHLA  210
            M+    +AD  V+ LIGERGREV+EFI+  L+E   +R V+V A +D PAL R+R+  +A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  211  TALAEYFRDRGQHVLLLMDSLTRYAMAQREIALAVGEPPAVRGYPPSVFARLPALVERAG  270
            T++AE+FRD G++V+LL DSLTRYA A REIALA GE +    YPP+VF+ LP L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  271  NGGRDGGSITAFYTVLMEGDDQQDPIADSARAILDGHLVLSRSLAEQGHYPAIDLEASIS  330
             G +  GSITAFYTVL+EGDD ++P+AD  R++LDGH+VLSR LAE+GHYPAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  331  RVMPNIVPAAQLQALHRLKRLYGRYREQRDLIAVGAYSAGLDPVLDQAVQAYPAIEAFLQ  390
            RV P + +  + Q    L+R  + Y+E   LI +G Y  G+D   D+A+++YP I +FL+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  391  QDQRE  395
            Q + E
Sbjct  412  QSKDE  416

909) lfiI in NC_013364


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (988),  Expect = 7e-72, Method: Compositional matrix adjust.
 Identities = 175/411 (43%), Positives = 271/411 (66%), Gaps = 5/411 (1%)

Query  24   GRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAG  83
            GR+  +++ LL++    +  G+LC I ++++    A+ VG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  84   ARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDllpplppSVNPLTRRSVDEP  143
             +V +  + H++ +GE+ LGRV++G+G PLDG+  L         + +  ++ R+++ +P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  144  LDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKE  203
            L  G++AI+++ T G GQRVG+ +++GVGKS LL+M+     AD  V+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  204  FIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDFLTRYA  263
            FID +L+ +   + ++VVA +D ++L R++A  +  +IA  FRD G +V+LL D LTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  264  MAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPI  323
             A REIAL+ GE + +  YPP+ F+ +P+L+E +G +E  GS+TA+YTVL EGDD ++P+
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDDMNEPL  317

Query  324  VDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYM  383
             D  R++LDGHIVL+R+LAE GHYPAID+  ++SR    VTS EH+Q A  L++  A Y 
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  384  EIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQ  434
            E+  LI +G Y  G D+  DKA+  +P I  FLRQ   E  + EL+  +L+
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

910) NT01EI_2424 in NC_012779


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (988),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 178/366 (49%), Positives = 252/366 (69%), Gaps = 7/366 (1%)

Query  67   AEVVGFNGRQLFLMPLEEVEGIVPGARVWAPAAALNSGKQLPLGPALLGRVLDGSARPLD  126
            AEVVG+NG + +L P+    G+  G +V     AL    Q+P+G ALLGRV+DG +RPLD
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV----MALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  127  GLPPPDESDHGGLSSQPFNPLQRTPITQVLDVGVRAINALLTVGRGQRMGLFAGSGVGKS  186
            G   P+     +  + P  ++ R PITQ L  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  GRELPEVC-WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  187  VLLGMMARYTQADVIVVGLIGERGREVKDFIENILGDEGRQRSVVIAAPADVSPLLRMQG  246
             LL+M+    +AD  V+ LIGERGREV++FI+  L++E R+R V++ A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  247  AAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALV  306
               AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  307  ERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRRLAEAGHYPAIDIE  366
            ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ 
Sbjct  290  ERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  367  ASISRAMTSLIDEAHYARVRSFKQLLSSYQRNRDLISVGAYARGSDPLLDQAIALYPQLE  426
            A++SR    +  + H      +++ L+ YQ    LI +G Y RG D   D+AI  YP++ 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  427  AFLQQG  432
            +FL+Q+
Sbjct  408  TFLRQS  413

911) CAP2UW1_3803 in NC_013194


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (988),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 184/398 (47%), Positives = 260/398 (66%), Gaps = 26/398 (6%)

Query  53   LGSSCRITPLGGSPIEAEVVGFNGERLFLMPSEDVYGLSPGARVVALETRHPPPQIGRLP  112
            +G  C I P  G  + AEVVG+NG + +L P     GL  G +V+AL  RH         
Sbjct  42   MGELCCIKP--GEEL-AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQ--------  90

Query  113  PARRRSIDRAKLVPVGESLLGRVLDGAGRPLDKLGPLHARSLRPLQSRPVNPMSRAPIDK  172
                        VPVGE+LLGRV+DG GRPLD    L     +  ++ P  +M R PI +
Sbjct  91   ------------VPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  173  ALDVGVRAINGLLCVGQGQRMGLFAGSGVGKSVLLGMMARYTEAEIIVVGLIGERGREVK  232
            +L  G+RAI+++   G+GQR+G+F+++GVGKS LL+M+    +A+  V+ LIGERGREV+
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  233  EFIEQILGEEGLRRSVVIAAPADVSPLMRLQGAAYATCIAEYFRDRGRHVLLIMDSLTRY  292
            EFI+  L+EE  +R V++ A +D ++L R+++   AT IAE+FRD G++V+L+ DSLTRY
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  293  AMAQREIALAIGEPPVTRGYPPSVFARLPQLVERAGNGADGGGSITGFYTVLAEGDDQQD  352
            A A REIALA GE +V+  YPP+VF+ LP+L+ER+G G    GSIT+FYTVL EGDD ++
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNE  315

Query  353  PIADAARAILDGHIVLSRTLADAGHYPAIDIEQSISRAMVNLVSPGHLEQIRNFKRLFSR  412
            P+AD  R++LDGHIVLSR LA+ GHYPAID+  ++SR    + S  H +    ++R ++ 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  413  YQRSRDLISVGAYAAGSDPQLDQAIAIYPRFESFLQQS  450
            YQ    LI +G Y  G D + D+AI  YP + +FL+QS
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

912) Tgr7_1966 in NC_011901


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (988),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 165/360 (46%), Positives = 252/360 (70%), Gaps = 5/360 (1%)

Query  86   RVFLMPVGDISGLTPNARVIPTQHAREARVGEALLGRVLDGAGRPLDGLPPPD-CEASVS  144
            + +L P    +GL    +V++ ++ ++  VGEALLGRV+DG GRPLDG   P+ C     
Sbjct  64   KALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC--WKD  121

Query  145  LNGRPLNPLARRPIHEPLDVGVRAINGLLTVGRGQRMGLFAGSGVGKSVLLGMMTRYTNA  204
             ++ P  ++ R+PI +PL  G+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +A
Sbjct  122  YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA  181

Query  205  DVTVVGLIGERGREVNEFVQNILGPEGMaravvvavpaDHPPLMRLHGAMLATSIAEYFR  264
            D  V+ LIGERGREV EF++  L+ E   R V+V   +D+P+L R+++  +AT+IAE+FR
Sbjct  182  DSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFR  241

Query  265  DQGLNVLLLMDSLTRFAQAQREISLAIGEPPATKGYTPSVFARLPHLVERAGNSDRGEGT  324
            D+G  V+LL DSLTR+A+A REI+LA GE + +  Y P+VF+ LP+L+ER+G +++  G+
Sbjct  242  DNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GS  299

Query  325  MTAFYTVLTEGDDQNDPIADAARAILDGHVVLSRRIAEAGRYPAIDIEASVSRLMNEIAD  384
            +TAFYTVL EGDD N+P+AD  R++LDGH+VLSRR+AE G+YPAID+ A++SR+   ++ 
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  385  PGQIQAARLFKQIYATYQQNRDLISVGAYQKGADPRVDAAIQYYPHLEQYLSQDMREAVD  444
              + Q A ++++  A YQ+   LI +G YQ+G D   D AI+ YP++  +L Q   E  +
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

913) ysaN in NC_008800


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  264 bits (987),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 181/405 (45%), Positives = 278/405 (69%), Gaps = 19/405 (4%)

Query  13   IHGCLLEAPLHGVFIGEICLIERDLCQPEVIAKAQVVGFKEGQTILSLIGRAQGLTREVV  72
            + + LL+A L GVF+GE+C      C       A+VVG++ ++++LS +  + GL     
Sbjct  28   VSATLLNAWLPGVFMGELC------CIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  73   IRPTGQPFVFEMGEHLAGKIYNAAGEEVGVLSNATASSEPLFTTLCRVD--NPPVSVNLR  130
            + +  +     +GE L G++ ++       ++ +  + E  +  +C+ D    P +  +R
Sbjct  82   VMALRRRHQVPVGEALLGRVIDG-------FGRPLDGRE--LPEVCWKDYDAMPPPAMVR  132

Query  131  RPVTTPLVTGVRAIDGLLTCGQGQRMGIFAAAGSGKTSLMSMIMNHAVADICVIALIGER  190
            +P+T PL+TG+RAID++ TCG+GQR+GIF+A+G GK++L++M+ N + AD  V+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  191  GREVTEFIH-ELQTSPRAAQTILVYATSDSPAVERCNAALLATAMAEYFRDQGKDVLLFV  249
            GREV EFI+  L    R  + ++V ATSD PA+ER  A ++AT++AE+FRD+GK V+L+ 
Sbjct  193  GREVREFIDFTLSEETR-KRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  250  DSMTRYARALRDVALAAGELPARRGYPASVFEQLPLLLERPGALQHGSITAFYTVLLESE  309
            DS+TRYARA R++ALAAGE +    YP++VF  LP LLER G  + GSITAFYTVL+E++
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  310  EESDPIGDEIRSIIDGHIYLSAQLAGRGHYPAIDILHSISRVFSKVTTPQHRQDAAKTRD  369
            + ++P++DE+RS++DGHI LS +LA RGHYPAID+L ++SRVF+ VT+ +HRQ AA  R 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  370  MLGRLAQIQLYLDLGEYQRGENTDNDHALDNRDVIEGFLQQAMEE  414
             L+   +++L + +GEYQRG +TD D A+D    I  FL+Q+ +E
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

914) fliI in NC_017249


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (984),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 173/381 (46%), Positives = 262/381 (69%), Gaps = 3/381 (0%)

Query  56   EVIGFSDNNAVVMPFAGLDGVRRGCKAVIANAANQVRPSSAWLGRVVNALGEPIDGKGPL  115
            EV+G+++++A++ PF++  G++ G + +     +QV  + A LGRV++++G P+DG+  L
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-L  114

Query  116  PQGPAPMPYRNSPPPAHSRKRVGAPLDLGVRAMNTFLTCCRGQRMGIFAGSGVGKSVLLS  175
            P+      Y   PPPA  R+ +  PL  G+RA+++  TC  GQR+GIF+++GVGKS LL+
Sbjct  115  PEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  176  MLARNVDAAVSVIGLIGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYLT  235
            ML    DA  +V+ LIGERGREV+EF++  L+EE   R V+VVATSD PAL R +A +++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  236  LAVAEYFRDEDKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAG  295
             ++AE+FRD++K V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  296  PGLGEGAITAIFTVLVDGDDHNEPIADAVRGILDGHIVMQRSIAERGRYPAINILKSVSR  355
             G   G+ITA++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG+YPAI++L ++SR
Sbjct  294  MG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  356  TMPKSADPQFWPTIQRARQVMATYADMEELIRLGAYRAGSSPEVDEAIRLHEPLEAFLRQ  415
              P  +  + +      R+ +A Y ++E LIR+G Y+ G   + D AI     + +FLRQ
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  416  RKDENASLADGYRQLAQILGD  436
             KDE  +      +L QIL +
Sbjct  413  SKDEVCGPELLIEKLHQILTE  433

915) fliI in NC_018139


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (984),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 174/382 (46%), Positives = 262/382 (69%), Gaps = 8/382 (2%)

Query  46   IGARCLVKINDEHSVQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVNVGHQLL  105
            +G  C +K  +E    AEVVG++     L ++    G+  G ++++  R  QV VG+ LL
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  106  GRILNGSGMFIDDGPPGEMV-ETYPLIGQVINPLKRAPIEVPLDVGIRAINGLLTVGRGQ  164
            GR+++G G  +D+    E+    Y  +     ++ R PI  PL  GIRAI+++ T G GQ
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAMPP--PAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLKRAVVVA  224
            R+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+ E  KR V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEAPATKG  284
            A +D ++L R+++  VAT+IAE+FRD+GK+V+LL DSLTR+A+A REIAL+ GE++ +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRA  344
            YPP+VF+ LP+L+ER+G G    GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR 
Sbjct  277  YPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYAKGSDP  404
            LAE+G+YPAID+ A++SRV   V S++H +   ++++ L++Y+    LI +G Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  LVDKAILAVNKLKDYLAQGMDE  426
              DKAI +   +  +L Q+ DE
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

916) invC in NC_017445


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (984),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 279/409 (69%), Gaps = 14/409 (3%)

Query  8    RLAHPLRIQGNVIEAYLPGTKIGEICEIQKSLVESEVLGLAQITGFNNEHTFLSLLTDSR  67
            R ++   + + +++A LPG  +GE+C I+ +        LA++ G+N   ++LS +T + 
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE------ELAEVVGINGSKALLSPFTSTA  74

Query  68   GFSRENVLLPTGKPLRFEVHEGIKGAIIDATG-TIKGYLVDMPVTPFTNVKSIMACGTAR  126
            G+   + +++  +  +  V E++ G +ID+ G  + G   ++P     +  ++ + +   
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG--RELPEVCWKDYDAMPPPAM--  130

Query  127  DFSLRKPITEPLLTGIRAIDGLLTCGQGQRIGIFATAGCGKTSLMNMLIEHSEADIYVIG  186
               +R+PIT+PL+TGIRAID++ TCG+GQR+GIF+++G GK++L+ ML + ++AD  V+ 
Sbjct  131  ---VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  187  LIGERGREVTEFVESMKKSARRSRVVLVYATSDRSSVERSNAAQIASSIAEYFSDMGYNV  246
            LIGERGREV EF++       R R V+V ATSDR+++ER  A  +A++IAE+F D G  V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  247  LLFVDSITRYARALRDVALSMGEMPVRRGYPASVFEALPKLLERPGRFLTGSITAFYTVL  306
            +L+ DS+TRYARA R++AL+ GE +V   YP++VF ALP+LLER G    GSITAFYTVL
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVL  307

Query  307  IENEEDPDVIGDEVRSILDGHIYLSRKLAAKGHYPAINVLNSISRVFSQVTDRNQQQMAN  366
            +E ++  + ++DEVRS+LDGHI LSR+LA +GHYPAI+VL ++SRVF+ VT ++++Q+A 
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  367  CFRDLLQRQRDMQLFIDLGEYHRGENENNDIAFDKNEQMEEFLKQDMTE  415
             +R  L   ++++L+I +GEY+RG + + D A+D   ++  FL+Q   E
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

917) fliI in NC_005126


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (984),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 183/389 (48%), Positives = 257/389 (67%), Gaps = 13/389 (3%)

Query  67   SEVVGFNGEKLLLMPLEDLEGIVPGARVYA--RPYSEDCGGGRQLPLGPELLGRVLDGAG  124
            +EVVG+NG K LL P+    G+  G +V A  R         +Q+P+G  LLGRV+DG G
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRR--------HQVPVGEALLGRVIDGFG  106

Query  125  RPLDGFPSPDTSYRAPLTTPPINPLQRTPISDVLDVGVRAINALLTVGRGQRMGLFAGSG  184
            RPLDG   P+   +   + PP  ++ R PI++ L  G+RAI+++ T G GQR+G+F+++G
Sbjct  107  RPLDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  185  VGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAAGLARSVVVAAPADISPLL  244
            VGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+     R V+V A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  245  RMQGASYATRIAEDFRDRGKHVLLIMDSLTRYSMAQREIALAIGEPPATKGYPPSVFAKL  304
            R+++   AT IAE FRD GK+V+L+ DSLTRY+ A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  305  PALVERAGNGVNGGGSITAFYTVLTEGDDQQDPIADAARAILDGHIVLSRSLAESGHYPA  364
            P L+ER+G G +  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR LAE GHYPA
Sbjct  286  PRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  365  IDIEASISRAMTALIDKQHYRRVQQFKQRLASYQRNRDLINVGAYAAGSDPLLDKAIELY  424
            ID+ A++SR    +   +H +    +++RLA YQ    LI +G Y  G D   DKAI+ Y
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  425  PYMAQFLQQDIEERSEYDAACIQLQQLLP  453
            P +  FL+Q  +E    +    +L+Q+L 
Sbjct  404  PDICTFLRQSKDEVCGPELLIEKLHQILT  432

918) fliI in NC_014125


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (982),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/382 (46%), Positives = 263/382 (69%), Gaps = 8/382 (2%)

Query  46   VGARCLVKINDEHSVQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVGHQLL  105
            +G  C +K  +E    AEVVG++     L ++    G+  G ++++  R  QV+VG+ LL
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  106  GRILNGSGMFIDDGPPGEMV-ETYPLIGQVINPLKRAPIEVPLDVGIRAINGLLTVGRGQ  164
            GR+++G G  +D+    E+    Y  +     ++ R PI  PL  GIRAI+++ T G GQ
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAMPP--PAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLRRAVVVA  224
            R+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+ E  +R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEAPATKG  284
            A +D ++L R+++  VAT+IAE+FRD+GK+V+LL DSLTR+A+A REIAL+ GE++ +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRA  344
            YPP+VF+ LP+L+ER+G G    GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR 
Sbjct  277  YPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYAKGSDP  404
            LAE+G+YPAID+ A++SRV   V S++H +   ++++ L++Y+    LI +G Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  LVDKAILAVNKLKDYLAQGMDE  426
              DKAI +   +  +L Q+ DE
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

919) lp12_1695 in NC_016811


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/382 (46%), Positives = 263/382 (69%), Gaps = 8/382 (2%)

Query  47   VGARCLVKINDEHSVQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVGHQLL  106
            +G  C +K  +E    AEVVG++     L ++    G+  G ++++  R  QV+VG+ LL
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  107  GRILNGSGMFIDDGPPGEMV-ETYPLIGQVINPLKRAPIEVPLDVGIRAINGLLTVGRGQ  165
            GR+++G G  +D+    E+    Y  +     ++ R PI  PL  GIRAI+++ T G GQ
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAMPP--PAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  166  RIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLRRAVVVA  225
            R+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+ E  +R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  226  APADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEAPATKG  285
            A +D ++L R+++  VAT+IAE+FRD+GK+V+LL DSLTR+A+A REIAL+ GE++ +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  286  YPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRA  345
            YPP+VF+ LP+L+ER+G G    GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR 
Sbjct  277  YPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  346  LAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYAKGSDP  405
            LAE+G+YPAID+ A++SRV   V S++H +   ++++ L++Y+    LI +G Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  406  LVDKAILAVNKLKDYLAQGMDE  427
              DKAI +   +  +L Q+ DE
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

920) fliI in NC_009494


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (982),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/382 (46%), Positives = 263/382 (69%), Gaps = 8/382 (2%)

Query  46   VGARCLVKINDEHSVQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVGHQLL  105
            +G  C +K  +E    AEVVG++     L ++    G+  G ++++  R  QV+VG+ LL
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  106  GRILNGSGMFIDDGPPGEMV-ETYPLIGQVINPLKRAPIEVPLDVGIRAINGLLTVGRGQ  164
            GR+++G G  +D+    E+    Y  +     ++ R PI  PL  GIRAI+++ T G GQ
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAMPP--PAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLRRAVVVA  224
            R+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+ E  +R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEAPATKG  284
            A +D ++L R+++  VAT+IAE+FRD+GK+V+LL DSLTR+A+A REIAL+ GE++ +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRA  344
            YPP+VF+ LP+L+ER+G G    GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR 
Sbjct  277  YPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYAKGSDP  404
            LAE+G+YPAID+ A++SRV   V S++H +   ++++ L++Y+    LI +G Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  LVDKAILAVNKLKDYLAQGMDE  426
              DKAI +   +  +L Q+ DE
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

921) LPE509_01433 in NC_020521


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (982),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/382 (46%), Positives = 263/382 (69%), Gaps = 8/382 (2%)

Query  46   VGARCLVKINDEHSVQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVGHQLL  105
            +G  C +K  +E    AEVVG++     L ++    G+  G ++++  R  QV+VG+ LL
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  106  GRILNGSGMFIDDGPPGEMV-ETYPLIGQVINPLKRAPIEVPLDVGIRAINGLLTVGRGQ  164
            GR+++G G  +D+    E+    Y  +     ++ R PI  PL  GIRAI+++ T G GQ
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAMPP--PAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLRRAVVVA  224
            R+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+ E  +R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEAPATKG  284
            A +D ++L R+++  VAT+IAE+FRD+GK+V+LL DSLTR+A+A REIAL+ GE++ +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRA  344
            YPP+VF+ LP+L+ER+G G    GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR 
Sbjct  277  YPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYAKGSDP  404
            LAE+G+YPAID+ A++SRV   V S++H +   ++++ L++Y+    LI +G Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  LVDKAILAVNKLKDYLAQGMDE  426
              DKAI +   +  +L Q+ DE
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

922) fliI in NC_002942


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/382 (46%), Positives = 263/382 (69%), Gaps = 8/382 (2%)

Query  47   VGARCLVKINDEHSVQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVGHQLL  106
            +G  C +K  +E    AEVVG++     L ++    G+  G ++++  R  QV+VG+ LL
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  107  GRILNGSGMFIDDGPPGEMV-ETYPLIGQVINPLKRAPIEVPLDVGIRAINGLLTVGRGQ  165
            GR+++G G  +D+    E+    Y  +     ++ R PI  PL  GIRAI+++ T G GQ
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAMPP--PAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  166  RIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLRRAVVVA  225
            R+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+ E  +R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  226  APADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEAPATKG  285
            A +D ++L R+++  VAT+IAE+FRD+GK+V+LL DSLTR+A+A REIAL+ GE++ +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  286  YPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRA  345
            YPP+VF+ LP+L+ER+G G    GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR 
Sbjct  277  YPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  346  LAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYAKGSDP  405
            LAE+G+YPAID+ A++SRV   V S++H +   ++++ L++Y+    LI +G Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  406  LVDKAILAVNKLKDYLAQGMDE  427
              DKAI +   +  +L Q+ DE
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

923) fliL in NC_021350


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (982),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/382 (46%), Positives = 263/382 (69%), Gaps = 8/382 (2%)

Query  46   VGARCLVKINDEHSVQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVGHQLL  105
            +G  C +K  +E    AEVVG++     L ++    G+  G ++++  R  QV+VG+ LL
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  106  GRILNGSGMFIDDGPPGEMV-ETYPLIGQVINPLKRAPIEVPLDVGIRAINGLLTVGRGQ  164
            GR+++G G  +D+    E+    Y  +     ++ R PI  PL  GIRAI+++ T G GQ
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAMPP--PAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLRRAVVVA  224
            R+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+ E  +R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEAPATKG  284
            A +D ++L R+++  VAT+IAE+FRD+GK+V+LL DSLTR+A+A REIAL+ GE++ +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRA  344
            YPP+VF+ LP+L+ER+G G    GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR 
Sbjct  277  YPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYAKGSDP  404
            LAE+G+YPAID+ A++SRV   V S++H +   ++++ L++Y+    LI +G Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  LVDKAILAVNKLKDYLAQGMDE  426
              DKAI +   +  +L Q+ DE
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

924) fliI in NC_018140


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/382 (46%), Positives = 263/382 (69%), Gaps = 8/382 (2%)

Query  46   VGARCLVKINDEHSVQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVNVGHQLL  105
            +G  C +K  +E    AEVVG++     L ++    G+  G ++++  R  QV VG+ LL
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  106  GRVLNGSGMFIDDGPPSEMV-ETYPLIGQVINPLKRAPIEVPLDVGIRAINGLLTVGRGQ  164
            GRV++G G  +D+   +E+    Y  +     ++ R PI  PL  GIRAI+++ T G GQ
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAMPP--PAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLRRAVVVA  224
            R+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+ E  +R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEAPATKG  284
            A +D ++L R+++  VAT+IAE+FRD+GK+V+LL DSLTR+A+A REIAL+ GE++ +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRA  344
            YPP+VF+ LP+L+ER+G G    GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR 
Sbjct  277  YPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LAEQGQYPAIDLEASISRVMQGIVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYAKGSDP  404
            LAE+G+YPAID+ A++SRV   + S++H +   ++++ L++Y+    LI +G Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  LVDKAILAVNKLKDYLAQGMDE  426
              DKAI +   +  +L Q+ DE
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

925) fliI in NC_003296


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 182/403 (46%), Positives = 263/403 (66%), Gaps = 24/403 (5%)

Query  79   LAEVVGFAEERAFLMPQTDLVGVVPGARVFPLEPQHLPLDTADPTIAHSKFLPVGPRLLG  138
            LAEVVG+   +A+L P T   G+  G +V +L  +H               +PVG  LLG
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQ--------------VPVGEALLG  99

Query  139  RVVDANGEPLDGKGPLGASEELAWGSLAPAPLNPLKRKPIERVLDVGVRAINGLLTVGQG  198
            RV+D+ G PLDG+       E+ W    + P  ++ R+PI + L  G+RAI+++ T G+G
Sbjct  100  RVIDGFGRPLDGR----ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  199  QRLGLFAGSGVGKSVLLGMMARYTQADVVVVGLIGERGREVKEFIDEILGDEGLARSAVV  258
            QR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFID  L++E   R  +V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  259  AAPADNSPLMRLQGAAYAHTIAEYFRDRGCNVLLIVDSLTRYAMAQREIALAIGEPPATK  318
             A +D ++L R+++   A TIAE+FRD G  V+L+ DSLTRYA A REIALA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  319  GYPPSAFAKLPALVERAGNGMVDAAGRGGSITAFYTVLAEGDDQQDPIADAARAILDGHF  378
             YPP+ F+ LP L+ER+G       G  GSITAFYTVL EGDD ++P+AD  R++LDGH+
Sbjct  276  EYPPGVFSALPRLLERTG------MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  379  VLSRKLAEQGHYPAIDIEQSISRVMSAIVPREQLDAARRFKQLYARYQRNRDLIAVGAYA  438
            VLSR+LAE+GHYPAID+  ++SRV + + ++E+ + A  +++  A YQ    LI +G Y 
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  439  RGSDPVTDQAIARYPSMEGFLQQGMFENESRERTLEKMNAVLS  481
            RG D  TD+AI  YP +  FL+Q+  E  + E  +EK++ +L+
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

926) N646_1353 in NC_022349


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (982),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 180/396 (46%), Positives = 275/396 (70%), Gaps = 5/396 (1%)

Query  43   IGSLCLVETMSGQMEAEVVGFSGDNLFLMPSEQITGILPGARVTPLTSDAGLPVGMELLG  102
            +G LC +   +G+  AEVVG++G + +L P    +G+  G +V +L     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDGLGPLYTDHRASFNAEPINPLARKPISEPLDVGLKAINGLLTVGKGQRI  162
            RVIDG G PLDG   L    +  ++A P  ++ R+PI++PL  G++AI+++ T G GQR+
Sbjct  100  RVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  163  GLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGrrrsvvvaap  222
            G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+E+ R+R V+V A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  223  adaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYP  282
            +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  283  PSVFAKLPALVERAGNGSAEQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMA  342
            P+VF+ LP L+ER+G G  E+GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR +A
Sbjct  279  PGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  343  DAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAYKPGTDPAI  402
            + GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D   
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  403  DGAFTLKPKLDEYLQQSMKESVPYDMCVNMLRNILG  438
            D A+   P +  +L+QS  E    ++ ++ L++IL 
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

927) VEA_002818 in NC_013456


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 180/396 (46%), Positives = 275/396 (70%), Gaps = 5/396 (1%)

Query  43   IGSLCLVETMSGQMEAEVVGFSGDNLFLMPSEQITGILPGARVTPLTSDAGLPVGMELLG  102
            +G LC +   +G+  AEVVG++G + +L P    +G+  G +V +L     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDGLGPLYTDHRASFNAEPINPLARKPISEPLDVGLKAINGLLTVGKGQRI  162
            RVIDG G PLDG   L    +  ++A P  ++ R+PI++PL  G++AI+++ T G GQR+
Sbjct  100  RVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  163  GLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGrrrsvvvaap  222
            G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+E+ R+R V+V A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  223  adaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYP  282
            +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  283  PSVFAKLPALVERAGNGSAEQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMA  342
            P+VF+ LP L+ER+G G  E+GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR +A
Sbjct  279  PGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  343  DAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAYKPGTDPAI  402
            + GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D   
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  403  DGAFTLKPKLDEYLQQSMKESVPYDMCVNMLRNILG  438
            D A+   P +  +L+QS  E    ++ ++ L++IL 
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

928) fliI in NC_014310


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 181/403 (45%), Positives = 264/403 (66%), Gaps = 24/403 (5%)

Query  79   LAEVVGFAEERAFLMPQTDLVGVVPGARVFPLEPQHLPLNTADPTIAHSKFLPVGPRLLG  138
            LAEVVG+   +A+L P T   G+  G +V +L  +H               +PVG  LLG
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQ--------------VPVGEALLG  99

Query  139  RVVDANGEPLDGKGPLGTHEELAWGSLAPAPLNPLKRKSIEHVLDVGVRAINGLLTVGQG  198
            RV+D+ G PLDG+       E+ W    + P  ++ R++I + L  G+RAI+++ T G+G
Sbjct  100  RVIDGFGRPLDGRE----LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  199  QRLGLFAGSGVGKSVLLGMMARYTQADVVVVGLIGERGREVKEFIDEILGDEGLARSAVV  258
            QR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFID  L++E   R  +V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  259  AAPADNSPLMRLQGAAYAHTIAEYFRDRGCNVLLIVDSLTRYAMAQREIALAIGEPPATK  318
             A +D ++L R+++   A TIAE+FRD G  V+L+ DSLTRYA A REIALA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  319  GYPPSAFAKLPALVERAGNGMVDATGRGGSITAFYTVLAEGDDQQDPIADAARAILDGHF  378
             YPP+ F+ LP L+ER+G       G  GSITAFYTVL EGDD ++P+AD  R++LDGH+
Sbjct  276  EYPPGVFSALPRLLERTG------MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  379  VLSRKLAEQGHYPAIDIEQSISRVMSAIVPREQLDAARRFKQLYARYQRNRDLIAVGAYA  438
            VLSR+LAE+GHYPAID+  ++SRV + + ++E+ + A  +++  A YQ    LI +G Y 
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  439  RGSDPMTDQAIARYPNMEGFLQQGMFENESRERTLEKMNAVLS  481
            RG D  TD+AI  YP++  FL+Q+  E  + E  +EK++ +L+
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

929) SE451236_20565 in NC_021820


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

930) SeAg_B3016 in NC_011149


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

931) SEEB0189_05700 in NC_021844


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

932) SBOV29201 in NC_022241


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

933) invC in NC_006905


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

934) CFSAN002050_20770 in NC_021818


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

935) SeD_A3204 in NC_011205


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

936) invC in NC_011294


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

937) invC in NC_011274


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

938) invC in NC_022221


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

939) invC in NC_016831


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

940) SEEH1578_23280 in NC_021810


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

941) SU5_03375 in NC_017623


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

942) CFSAN002069_17800 in NC_021812


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

943) SeHA_C3084 in NC_011083


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

944) CFSAN001992_19055 in NC_020307


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

945) SNSL254_A3099 in NC_011080


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

946) SN31241_39860 in NC_021902


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

947) SPAB_03597 in NC_010102


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

948) spaI in NC_012125


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

949) I137_13780 in NC_021984


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

950) SeSA_A3047 in NC_011094


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

951) spaI in NC_003198


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

952) invC in NC_016856


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

953) invC in NC_017046


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

954) STMMW_28561 in NC_016854


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

955) invC in NC_003197


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

956) invC in NC_016810


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

957) invC in NC_016857


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

958) STU288_14625 in NC_021151


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

959) invC in NC_016863


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

960) CFSAN001921_02605 in NC_021814


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

961) STBHUCCB_29400 in NC_016832


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

962) TY21A_14125 in NC_021176


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

963) spaI in NC_004631


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

964) NAL212_0483 in NC_015222


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (982),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 187/432 (44%), Positives = 280/432 (65%), Gaps = 34/432 (7%)

Query  20   PANSFLLSGTVTKVTGLVMEAVGLRLA---VGSSCTVFLANGQNVSAEVVGFSGERLFLM  76
            P++++   G +  V++ +++A   +L+   +G  C +    G+++ AEVVG++G + +L 
Sbjct  15   PPDGYCRWGRIQDVSATLLNA---WLPGVFMGELCCI--KPGEEL-AEVVGINGSKALLS  68

Query  77   PSSDVYGLSPGARVFPSEVLNEPPRIGNFQHPRRRAADRAKHVIVGPELLGRVLNGVGEP  136
            P +   GL  G +V +                RRR      +V VG  LLGRV++G G P
Sbjct  69   PFTSTAGLHCGQQVMAL---------------RRR-----HQVPVGEALLGRVIDGFGRP  108

Query  137  LDRLGPTHAEHSVPLY-SRPFNPLERTPVSEPLDVGVRAINTLLTVGRGQRMGLFAGSGV  195
            LD  G   +E     Y + P  ++ R P+++PL  G+RAI+++ T G GQR+G+F+++GV
Sbjct  109  LD--GRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGV  166

Query  196  GKSVLLGMMARYTTADVIVVGLIGERGREVKEFIENILGKEGLARSVVVAAPADTSPLLR  255
            GKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ E   R V+V A +D ++L R
Sbjct  167  GKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALER  226

Query  256  LQGAAYATAIAEYFRDSGKHVLLIMDSLTRYAMAQREISLAIGEPPATKGYPPSVFAKLP  315
            +++   AT+IAE+FRD+GK+V+L+ DSLTRYA A REI+LA GE + +  YPP+VF+ LP
Sbjct  227  VRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALP  286

Query  316  QLVERAGNGNQAGGSITAFYTVLAEGDDQNDPIVDSARAILDGHIVLSRRLAEAGHYPAI  375
            +L+ER+G G++  GSITAFYTVL EGDD N+P+ D  R++LDGHIVLSRRLAE GHYPAI
Sbjct  287  RLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI  344

Query  376  DIEASISRVMTSVVPPKQIDMARQFKSLYARYQRSHDLISVGAYVAGTDPELDRAIRLYP  435
            D+ A++SRV   V +  + ++A  ++   A YQ  + LI +G Y  G D + D+AI  YP
Sbjct  345  DVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  436  SFEKFLHQTMSQ  447
             +  FL+Q+  +
Sbjct  405  DICTFLRQSKDE  416

965) Slit_0595 in NC_013959


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  263 bits (982),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 184/393 (47%), Positives = 258/393 (66%), Gaps = 25/393 (6%)

Query  95   AEVVGFAGDRLFLMPENDVQGLVPGARVTPAEPMRAPVAPGQSQLPRRRSSDLARHLPVG  154
            AEVVG+ G + +L P     GL  G +V +              L RR+      ++PVG
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA--------------LRRRH------QVPVG  94

Query  155  EHLLGRVLDGAGRPLDQFGPLLESKSAPLQSRPINPLERAAIKEALDVGVRAINSLLTVG  214
            E LLGRV+DG GRPLD    L E      ++ P  ++ R +I ++L  G+RAI+S+ T G
Sbjct  95   EALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCG  153

Query  215  RGQRMGLFAGSGVGKSVLLGMMARYTSADVIVVGLIGERGREVKEFITDILGQEGLRRSV  274
             GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI   L++E  +R V
Sbjct  154  EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCV  213

Query  275  VVAAPADTSPLMRLQGAAYATTIAEYFRDQGKNVLLIMDSLTRYAMAQREIALAIGEPPA  334
            +V A +D ++L R+++   ATTIAE+FRD+GK V+L+ DSLTRYA A REIALA GE + 
Sbjct  214  IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAV  273

Query  335  TKGYPPSVFAKLPQLVERAGNGAEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVL  394
            +  YPP+VF+ LP+L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVL
Sbjct  274  SGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  395  SRRLAEQGHYPAIDIEASISRAMNHLVSPQHFLQVQRFKHMYAHYQRNHDLISVGAYVKG  454
            SRRLAE+GHYPAID+ A++SR    + S +H      +++  A YQ  + LI +G Y +G
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRG  391

Query  455  SDPLLDQAIQLYPHMEHFLKQGMYESEVYTASM  487
             D   D+AI+ YP++  FL+Q+    EV  + +
Sbjct  392  VDTDTDKAIDTYPDICTFLRQSK--DEVCGPEL  422

966) fliI in NC_007964


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  262 bits (981),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 178/382 (47%), Positives = 270/382 (71%), Gaps = 4/382 (1%)

Query  67   AEVVGFNGDNAVVMPFAGLDGVRRGCRAVIANASSQVRPAPSWLGRVLNAMGEPIDGKGA  126
            AEVVG+NG +A++ PF++  G++ G + +      QV  + + LGRV+++ G P+DG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-E  113

Query  127  LPQGpvpvpfrnspppAHSRKRVGKPLDLGVRALNTFLTCCRGQRLGIFAGSGVGKSVLL  186
            LP+      +   PPPA  R+ + +PL  G+RA+++  TC  GQR+GIF+++GVGKS LL
Sbjct  114  LPE-VCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  187  SMLARNADADISVIGLVGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYL  246
            +ML   +DAD +V+ L+GERGREV+EF++  L+EE   R V+VVATSD PAL R +A ++
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  247  TLAVAEYFRDEGKDVMCMMDSVTRFAMAQREIGLSTGEPPTTKGYTPTVFTELPRLLERA  306
            + ++AE+FRD+GK V+ + DS+TR+A A REI+L++GE + +  Y P VF+ LPRLLER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  307  GPGAADKGTITGIFTVLVDGDDHNEPVADAVRGILDGHIVMQRAIAERGRYPAINVLKSV  366
            G G  +KG+IT+++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG+YPAI+VL ++
Sbjct  293  GMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  367  SRTMPKSADPAFLPVITRGRQVMATFSDMEELIRLGAYRTGSNAEVDEAIRLNPLLEDFL  426
            SR  P  +      + +  R+ +A + ++E LIR+G Y+ G +++ D AI   P +  FL
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  427  RQAKDEVTSIEDGYRRLQQILK  448
            RQ+KDEV + E    +L+QIL 
Sbjct  411  RQSKDEVCGPELLIEKLHQILT  432

967) DSC_03140 in NC_016147


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  262 bits (981),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 185/398 (47%), Positives = 270/398 (68%), Gaps = 6/398 (1%)

Query  61   MGSRCRVATSGGRWVDAEVVGFSGDRTYLMPTGDLQGLLPNARVVSIHRKGEVAVGEGLL  120
            MG  C +  +      AEVVG++G ++ L P     GL    +V++++R+ +V+VGE+LL
Sbjct  42   MGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  121  GRVIDNEGTPLDGKGPIRAERYVALAGTPINPLSRMPISESLDVGVRAINAVLPIGRGQR  180
            GRVID  G PLDG+  +         + P  ++ R PI+++L  G+RAI++V   G GQR
Sbjct  99   GRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  181  VGLFAGSGVGKSTLLGMMTRFTGADVIVVGLIGERGREVRDFVEATLGEEGlrravvvaa  240
            VG+F+++GVGKSTLL+M+    +AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  241  padrpplarlHGALRATAIAEWYRDQGLQVLLLMDSLTRFAQAQREIGLSVGEPPTTRGY  300
             +DRP+L R+++ + AT+IAE +RD+G +V+LL DSLTR+A+A REI+L+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  301  PPSVFAKLPALVERAGMGADGRGSITAFYTVLTEGDDQQEPIADASRAILDGHIVLTRRI  360
            PP+VF+ LP L+ER+GMG   +GSITAFYTVL EGDD +EP+AD  R++LDGHIVL+RR+
Sbjct  278  PPGVFSALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  361  ADAGQYPAIDIEQSVSRVMQDITDAPWREHIRKLKRLIAAYNAQRDLIAIGAYQRGSDPN  420
            A+ G+YPAID+  ++SRV   +T    R+    L+R +A Y+    LI IG YQRG D +
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  421  VDQALARWPAIQNFLGQDVRECSDVAASRDALSRLLDE  458
             D+A+   P I  FL Q   E  +     + L ++L E
Sbjct  396  TDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

968) fliI in NC_013949


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  262 bits (981),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 175/416 (43%), Positives = 279/416 (68%), Gaps = 8/416 (1%)

Query  19   KFGLVEKITPTILYASGLTPSIGDIVCVHREDGSSGLGMVTLCQSENFGFTPFSFIEGYK  78
            + G ++ +++T+L A      +G++ C+   +  + +  +   ++ +  ++PF+   G  
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI---NGSKALLSPFTSTAGLH  77

Query  79   VGDKVFIEKEGFLLPVGKDVLGRVIDPLGNPIDEKG-PITTSAHIPIISQPIKAMRRGVI  137
             G++V   +    +PVG  +LGRVID +G P+D +  P     +   ++ P  AM R  I
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPP--AMVRQPI  135

Query  138  DEVFSVGIKAIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGSKAPIKVVALIGERGRE  197
             + +  GI+AID++ TCG GQ++GIF+++GVGKSTL++M+ +++ A  +V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  198  VPEFIQKNL-DNNLENTVIVVATSDDSALMRKYGAFSAMAVAEFFKNQGHDVLFIMDSVT  256
            V EFI+  L ++     VIVVATSD +AL R  + F A ++AEFF+++G  V+++ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  257  RFAMAQREIGLALGEPPTSKGYPPSVLALLPQLMERAGKEEGRGSITAFFTVLVEGDDLS  316
            R+A A REI+LA GE + S  YPP+V++ LP+L+ER+G  E +GSITAF+TVLVEGDD++
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGSITAFYTVLVEGDDMN  314

Query  317  DPIADQSRSILDGHIVLSRELTDFGIYPPIHILNSASRVSNDIITKEHRNAAKNFRKLYA  376
            +P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + + EHR+ A  +R+  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  377  LLKENEVLIRIGSYQKGTDPDLDEAIEKKKFMEDFITQEEDQLFDFDAIIEELYKI  432
            L +E E+LIRIG YQ+G D D D AI+    +  F+ Q  D++ + + +IE L +I
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

969) fliI in NC_012796


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  262 bits (980),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 185/404 (46%), Positives = 276/404 (69%), Gaps = 11/404 (2%)

Query  22   YGKVSKVVGLIAEGRGIRAPVGSVCHMLPQGEAPGTEVPAEVVGFRDGACLFMPYGDLRG  81
             G++  V + + +++     +G +C +      PG E+ AEVVG+ ++  L+ P+    G
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCI-----KPGEEL-AEVVGINGSKALLSPFTSTAG  75

Query  82   IAPGTLIRNTSTPPLFPVGRRYLGRVIDAFGNPIDNGD-PVVPRR-FNPIFAPAPSPMDR  139
            +  G  +         PVG   LGRVID+FG P+D  + P V ++ ++++   +P++M R
Sbjct  76   LHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVR  132

Query  140  PRICDPMDVGVRAINGCLTLGKGQRVGIMAGSGVGKSTLMGMIARNTVADVNVIGLVGER  199
              I +P+  G+RAI++  T G GQRVGI +++GVGKSTL++M+     AD NV+ L+GER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  200  GRELREFIEKDLGPEGMARSVVVVATSDQSPLIrmraayaatamaEFFRDEGNDVILMMD  259
            GRE+REFI+  L+ E   R V+VVATSD+++L R+RA + AT++AEFFRD+G+ V+L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  260  SVTRFAMAGREVGLAAGEPPTTRGYTPSVFAQLPKLLERAGRNGLGSITGIYTVLVDGDD  319
            S+TR+A A+RE++LAAGE + +  Y P+VF+ LP+LLER+G    GSIT++YTVLV+GDD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  320  FNEPIADSVRSILDGHIVLTRDLADQGHFPAIDVLRSISRLRSDVTPKDALAASRELIRL  379
             NEP+AD VRS+LDGHIVL+R LA++GH+PAIDVL ++SR+ + VT+ +    +  L R 
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  380  LATYRRVEDMVNIGAYARGANPEIDRAIDMIGPINTFLRQDVAE  423
            LA Y+ VE ++ IG Y RG + + D+AID    I TFLRQ   E
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

970) fliI in NC_014562


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  262 bits (981),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 185/409 (46%), Positives = 265/409 (65%), Gaps = 17/409 (4%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCIIERNDGKTISEIESEVVGFNGQKLLMMPLEEVD  86
            R GR+   ++ +L+A    + +G  C I   +  +      EVVG+NG K L+ P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA------EVVGINGSKALLSPFTSTA  74

Query  87   GILPGARVYA-RQNGDNPQAGKQLMLGPELLGRVLDGSGRPLDGLPSPDTGYRAPLITPP  145
            G+  G +V A R+  + P       +G  LLGRV+DG GRPLDG   P+   +     PP
Sbjct  75   GLHCGQQVMALRRRHQVP-------VGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  146  FNPLQRTPITDVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTKADVIVV  205
              ++ R PIT+ L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  206  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGKH  265
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD GK+
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  266  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIDGGGSITAFY  325
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  326  TVLTEGDDQQDPIADSARAILDGHIVLSRRLGEAGHYPAIDIEASISRAMTSLIDENHYA  385
            TVL EGDD ++P+AD  R++LDGHIVLSRRL+E GHYPAID+ A++SR    +  ++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  386  QVRQFKQLLSSFQRNRDLVSVGAYAAGSDPMLDKAIRLYPQMEAFLQQG  434
                +++ L+ +Q    L+ +G Y  G D   DKAI  YP++ +FL+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

971) STMDT12_C29430 in NC_016860


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  262 bits (980),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNALGLSRD  73
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136

Query  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  374  EELQLFIDLGEYRPGENIDNDRAMQ  398
            +E++L+I +GEY+ G + D D+A++
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAID  401

972) Sulku_2523 in NC_014762


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  262 bits (980),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 171/387 (45%), Positives = 271/387 (71%), Gaps = 11/387 (2%)

Query  52   AEALGMVSEVERNRFFITPFRFVEGFRAGDKVYPNQSGMMIEVGEALLGRVVDPFMNPID  111
            +E L+ V  ++ ++ +++PF    G++ G++V + +    + VGEALLGRV+D F  P+D
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  112  GKG--PIAGSHFESIIKAPIAAMKRGMIDEPFSVGVKTIDGLLTCGKGQKLGIFAGSGVG  169
            G+    +   +++++   P +AM R  I +P+  G+++ID++ TCG GQ++GIF+++GVG
Sbjct  111  GRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  170  KSTLMGMIVRGADAPIKVVALIGERGREVPEFIEKSLGGNL-ENTVLVVATSDDSPLMRK  228
            KSTL++M+  ++DA  +V+ LIGERGREV EFI+ +L+ +     V+VVATSD ++L R 
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  229  YGAFSAMSVAEYFKGKGQDVLFMMDSVTRFAMAQREIGLALGEPPTSKGYPPSSLTLLPQ  288
             + F A ++AE+F+++G+ V+++ DS+TR+A A REI+LA GE + S  YPP+ ++ LP+
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  289  LMERAGKEEGSGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPIHI  348
            L+ER+G  E  GSITAF+TVLVEGDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++
Sbjct  288  LLERTGMGE-KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDV  346

Query  349  LNSASRVMNDIITPEH--LAAVRRFRRLYTLLKENEMLIRIGAYVRGTDRELDEAISKKE  406
            L + SRV   + + EH  LAA+ R RRL +L +E E+LIRIG Y RG D + D AI    
Sbjct  347  LATLSRVFPVVTSHEHRQLAAILR-RRL-ALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  407  KMEAFLSQEAMSISGYQESIDQLIALM  433
             + +FL Q    + G +  I++L  ++
Sbjct  405  DICTFLRQSKDEVCGPELLIEKLHQIL  431

973) invC in NC_010694


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  262 bits (980),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 178/413 (44%), Positives = 273/413 (67%), Gaps = 22/413 (5%)

Query  8    RLAHPLRIQGSVIEAFLPGTKIGEICEIQKSLIEDDLLGLAQVTGFNNENTFLSLLTDNL  67
            R ++   + +++++A LPG  +GE+C I+ +  E+    LA+V G+N  +++LS +T   
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPG--EE----LAEVVGINGSKALLSPFTSTA  74

Query  68   GFSCENVLFPTGKPFCINVHEDLIGTIIDASGAIRGRFDEQSVNPLTKSKSIVACRA---  124
            G+ C + + +  +   + V E L+G +ID+ G            PL        C+    
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFG-----------RPLDGRELPEVCWKDYD  123

Query  125  --PLDFTLRRPIAEPLITGIRAIDGLLTCGVGQRIGIFAAAGCGKTSLMNMLVTHCEADV  182
              P    +R+PI++PL+TGIRAID++ TCG GQR+GIF+A+G GK++L+ ML    +AD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  183  YVIGLIGERVREVTEFVESMKLSSRRAKVILVYATSDRSSVERTNAAQVASSIAGYFSEL  242
             V+ LIGER REV EF++       R + ++V ATSDR+++ER  A  VA++IA +F + 
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  243  GKKVLLFIDSVTRYARALRDVALSMGELPARRGYPASVFESLPKLLERPGCFITGSITAF  302
            GK+V+L+ DS+TRYARA R++AL+ GE +    YP++VF +LP+LLER G    GSITAF
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  303  YTVLIENEEEADVIGDEVRSILDGHIYLSHKLAAKGHYPAIDILQSISRVFSSVTDDNHQ  362
            YTVL+E ++  + ++DEVRS+LDGHI LS++LA +GHYPAID+L ++SRVF+ VT ++H+
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  363  QLAKVFRSLLQRKSEMQLYIDLGEYRYGENVDNDIAFDKAGDIELFLRQDQEE  415
            QLA ++R  L    E++L I +GEY+ G + D D A+D   DI  FLRQ ++E
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

974) fliI in NC_007626


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  262 bits (978),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 181/410 (45%), Positives = 271/410 (67%), Gaps = 22/410 (5%)

Query  21   YGQIAAVQGMLLEAGGVQRTISVGDRCNVVARDGRRVICEVVGFRQGRALLMPYSPIEGI  80
             G+I  V + LL+A      + +G+ C + + +    + EVVG+  ++ALL P+++  G+
Sbjct  22   WGRIQDVSATLLNA--WLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGL  76

Query  81   -------GLGCRTEVQDAEPVVFPDRGWLGRVINGFGEPVdglgplpggdTAYPVKAQPP  133
                   +L  R +V  +E++       LGRVI+GFG P+DG          Y   A PP
Sbjct  77   HCGQQVMALRRRHQVPVGEAL-------LGRVIDGFGRPLDGRELPEVCWKDY--DAMPP  127

Query  134  SAHSRSRVSGKIDLGLRSVNAFLTCCRGQRMGIFAGSGVGKSSLMSMMARNTSADISVLG  193
            +A  R  ++  +  G+R++++  TC  GQR+GIF+++GVGKS+L++M+     AD +VL 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  194  LIGERGREAREFIEDDLGPEGMKRSVVVVSTSDESPLMRRQAAYMTLTVAEFFRDQGLDV  253
            LIGERGRE REFI+  L+ E  KR V+VV+TSD ++L R +A +++ T+AEFFRD+G  V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  254  LCMMDSVTRFAMAQREISLSAGEPPASKGYTPTVFAELPRLLERAGPGVGKGSITGLFTV  313
            + + DS+TR+A A REI+L+AGE + S  Y P VF+ LPRLLER+G G  KGSIT+++TV
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG-EKGSITAFYTV  306

Query  314  LVDADDHNEPIADAVRGILDGHIVLDRSIAERGRYPAINILRSVSRTMPGCNNQQENDLV  373
            LV++DD NEP+AD VR++LDGHIVL R +AERG+YPAI++L ++SR  P   ++++ +L 
Sbjct  307  LVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLA  366

Query  374  RRARSLLSTYEDMAELIRLGAYRRGTDPKVDEAIHYYPAIEAFLGQLKTE  423
               R  L+ Y+++  LIR+G Y+RG D   D AI+ YP I +FL Q K E
Sbjct  367  AILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

975) fliI in NC_017082


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  261 bits (976),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 170/364 (47%), Positives = 253/364 (70%), Gaps = 3/364 (0%)

Query  56   EVIGFSGNNAVVMPFAGLDGVRRGCKAVIANAANQVRPCAAWLGRVVNALGEPIDGKGPL  115
            EV+G++G++A++ PF++  G++ G + +     +QV    A LGRV++++G P+DG+  L
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-L  114

Query  116  PQGPAPMPYRNSPPPAHSRKRVGAPLDLGVRAMNTFLTCCRGQRMGIFAGSGVGKSVLLS  175
            P+      Y   PPPA  R+ +  PL  G+RA+++  TC  GQR+GIF+++GVGKS LL+
Sbjct  115  PEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  176  MLARNVDAAVSVIGLIGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYLT  235
            ML    DA  +V+ LIGERGREV+EF++  L+EE   R V+VVATSD PAL R +A +++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  236  LAIAEYFRDEEKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAG  295
             +IAE+FRD+ K V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  296  PGLGEGAITAIFTVLVDGDDHNEPIADAVRGILDGHIVMQRSIAERGRYPAINILKSVSR  355
             G   G+ITA++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG+YPAI++L ++SR
Sbjct  294  MG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  356  TMPKSADPQFWPVIQKARAVMATYADMEELIRLGAYRAGSSPEVDEAIRLHEPLEAFLKQ  415
              P  +  + + +    R  +A Y ++E LIR+G Y+ G   + D AI     + +FL+Q
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  416  RKDE  419
             KDE
Sbjct  413  SKDE  416

976) VPBB_2064 in NC_019955


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  261 bits (976),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 179/398 (45%), Positives = 274/398 (69%), Gaps = 9/398 (2%)

Query  43   IGSLCLVETMSGHMEAEVVGFSGDNLYLMPSEQITGILPGAKVTPLTSEAGLPVGMELLG  102
            +G LC +   +G+  AEVVG++G +  L P    +G+  G +V +L     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTEHRASFNAEPINPLARKPISEPLDVGLKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +  ++A P  ++ R+PI++PL  G++AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGrrrsvvva  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+E+ R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  apadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGSPEQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  E+GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAYKPGTDP  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDGAFTLKPKLDEYLQQRMKESVPYDMCVNMLRNILG  438
              D A+   P +  +L+Q   E    ++ ++ L++IL 
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

977) fliI in NC_021847


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  261 bits (976),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 179/398 (45%), Positives = 274/398 (69%), Gaps = 9/398 (2%)

Query  43   IGSLCLVETMSGHMEAEVVGFSGDNLYLMPSEQITGILPGAKVTPLTSEAGLPVGMELLG  102
            +G LC +   +G+  AEVVG++G +  L P    +G+  G +V +L     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTEHRASFNAEPINPLARKPISEPLDVGLKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +  ++A P  ++ R+PI++PL  G++AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGrrrsvvva  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+E+ R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  apadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGSPEQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  E+GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAYKPGTDP  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDGAFTLKPKLDEYLQQRMKESVPYDMCVNMLRNILG  438
              D A+   P +  +L+Q   E    ++ ++ L++IL 
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

978) fliI in NC_004603


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  261 bits (976),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 179/398 (45%), Positives = 274/398 (69%), Gaps = 9/398 (2%)

Query  43   IGSLCLVETMSGHMEAEVVGFSGDNLYLMPSEQITGILPGAKVTPLTSEAGLPVGMELLG  102
            +G LC +   +G+  AEVVG++G +  L P    +G+  G +V +L     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTEHRASFNAEPINPLARKPISEPLDVGLKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +  ++A P  ++ R+PI++PL  G++AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGrrrsvvva  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+E+ R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  apadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGSPEQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  E+GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAYKPGTDP  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDGAFTLKPKLDEYLQQRMKESVPYDMCVNMLRNILG  438
              D A+   P +  +L+Q   E    ++ ++ L++IL 
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

979) fliI in NC_007575


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  261 bits (976),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 162/383 (43%), Positives = 263/383 (69%), Gaps = 3/383 (0%)

Query  53   ETIGMVTEIDGLIFFITPFSFVEGFRSGDRVFLDQTGLNIPVSSSLLGRVVDPFMRPIDG  112
            E ++ V  I+G   +++PF+   G++ G++V   +   ++PV+ +LLGRV+D F RP+DG
Sbjct  52   EELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG  111

Query  113  KGSINDSKLSPIIKAPIAAMKRGMIDEIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKST  172
            +  + +         P +AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKST
Sbjct  112  RE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  173  LMGMIVRGANAPIKVVALIGERGREVPEFIEKNLGGNLEN-TVIVVATSDDSPLMRKYGA  231
            L++M+  +++A  +V+ LIGERGREV EFI+  L+ +  +  VIVVATSD ++L R  + 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  232  FAAMSVAEFFKDQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSSLTLLPQLME  291
            F A ++AEFF+D+G  V+++ DS+TR+A A REI+LA GE + S  YPP+ ++ LP+L+E
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  292  RAGKEEGKGSITAFFTVLIEGDDMGDPIADQSRSILDGHIVLSREMTDFGIYPPVHILNS  351
            R+G  E KGSITAF+TVL+EGDDM +P+AD+ RS+LDGHIVLSR +++ G YP++++L +
Sbjct  291  RTGMGE-KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  352  ASRVMNDIITPEHLRAVQKFRRLYTLLKENEVLIRIGAYTKGSDSELDEAMAKKSEMEKF  411
             SRV   + + EH +    +RR  +L +E E+LIRIG Y +G D++ D A+   +++  F
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  412  LMQNSSTQSDFDETVETLLKLMN  434
            L Q+     + +  +E L +++ 
Sbjct  410  LRQSKDEVCGPELLIEKLHQILT  432

980) fliI in NC_017955


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  261 bits (975),  Expect = 7e-71, Method: Compositional matrix adjust.
 Identities = 191/381 (51%), Positives = 266/381 (70%), Gaps = 8/381 (2%)

Query  42   VGDLVEVSPGQRPLLAEVVAVHRDR--LTCMPLGDLSGIRSGTPVRPTGRPLQVPVGEAl  99
            +G+L  + PG+   LAEVV+++  +  L+  P+   +G++ G  V +  R  QVPVGEAL
Sbjct  42   MGELCCIKPGEE--LAEVVGINGSKALLS--PFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  100  lgrvldglgrpldggpplgslvsYVDLTSETPNALTRARVSRPLATGVRALDTLVPVGRG  159
            LGRV+DG+GRPLDG           D  +  P A+ R  +++PL TG+RA+D++   G G
Sbjct  98   LGRVIDGFGRPLDGRELPEVC--WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  160  QRLGIFAGSGVGKSTLLSQITRGTDADIRVIGLIGERGREVREFIEEDLGPEGLAQSVVV  219
            QR+GIF+++GVGKSTLL+ +  + DAD  V+ LIGERGREVREFI+  L+ E   + V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  220  VATSDEPPLVRLKAAFVATRIAEAFRDQGRDVLLMMDSITRTAMAQREVGLSAGEPPATR  279
            VATSD P+L R++A FVAT IAE FRD+G+ V+L+ DS+TR A A RE++L+AGE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  280  GYPPSVFAMLPKLLEKAGTSTAGSITGLYTVLVDGDDHNEPIADTARSILDGHVVLTRKL  339
             YPP+VF+ LP+LLE++G +  GSIT++YTVLV+GDD NEP+AD  RS+LDGH+VL+R+L
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  340  ATAGHFPAIDVLESISRVATAVVPGAQMTDARELRRMLGALRDVRELIEIGAYQTGTDPL  399
            A  GH+PAIDVL ++SRV   V +  +   A  LRR L+  ++V  LI IG YQ G D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  400  VDRARRLVPDIDAFLRQSTAD  420
             D+A    PDI +FLRQS  +
Sbjct  396  TDKAIDTYPDICTFLRQSKDE  416

981) fliI in NC_008435


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  261 bits (975),  Expect = 7e-71, Method: Compositional matrix adjust.
 Identities = 167/381 (44%), Positives = 263/381 (70%), Gaps = 3/381 (0%)

Query  56   EVIGFSGNNAVVMPFAGLEGVRRGCRAVIANAAAQVRPSAAWLGRVLNAMGEPIDGKGPL  115
            EV+G++G++A++ PF++  G++ G + +      QV  + A LGRV+++ G P+DG+  L
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-L  114

Query  116  SQGPSPMQFRNAPPPAHSRKRVGAPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLS  175
            ++     ++   PPPA  R+ +  PL  G+RA+++  TC  GQR+GIF+++GVGKS LL+
Sbjct  115  PEVCW-KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  176  MLARNVDADVSVIGLVGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYLT  235
            ML    DAD +V+ L+GERGREV+EF++  L+EE   R V+VVATSD PAL R +A +++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  236  LAIAEYFRDEEKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAG  295
             +IAE+FRD+ K V+ L DS+TR+A A REI+L+AGE + +  Y P VF+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  296  PGLREGTITGIFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINILKSVSR  355
             G + G+IT+++TVLV+GDD NEP+AD VR++LDGHIV+ R +AERG+YPAI++L ++SR
Sbjct  294  MGEK-GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  356  TMPKSADPAYLPIIKRARQIMGTYSDMEELIRLGAYRAGSSPEVDESIQLHEPLENYLRQ  415
              P  +      +    R+ ++ Y ++E LIR+G Y+ G   + D +I+    +  +LRQ
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  416  GKGEATSLREGYAQLEQMLGN  436
            +K+E  +      +L+Q+L +
Sbjct  413  SKDEVCGPELLIEKLHQILTE  433

982) fliI in NC_014145


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  261 bits (974),  Expect = 8e-71, Method: Compositional matrix adjust.
 Identities = 189/424 (45%), Positives = 278/424 (66%), Gaps = 10/424 (2%)

Query  11   QNLQHRLQSGGPLPLVYS--GSLVRVRGLILEAQGLEASLGERCRISTEQNRVIDAEVVG  68
            ++L +RL+   P P  Y   G +  V + +L+A      +GE C I   ++    AEVVG
Sbjct  3    NELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVG  59

Query  69   FNGDHVQLMALGEVQGLTPGARVHPVPGDIRIPVGPELLGRVLDGNGRPLDGDGALLASH  128
            +NG    L ++    GL  G +V ++    ++PVG  LLGRV+DG GRPLDG   L    
Sbjct  60   INGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVC  118

Query  129  YTTLSTQQINPLARALVRQPLDVGVRAINALFTVGRGARMGLFAGSGVGKSVLLGMMARN  188
                 +    ++ R  + QPL  G+RAI+++ T G G R+G+F+++GVGKS LL+M+   
Sbjct  119  WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNA  178

Query  189  TNADVIVVGLIGERGREVKEFIEDILGVEGRSRavvvaapadapaLTRIRGARLATAMAE  248
             +AD  V+ LIGERGREV+EFI+  L+ E R R V+V A +D PAL R+R+  +AT++AE
Sbjct  179  PDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE  238

Query  249  YYRDQGLNVLLLMDSVTRYALALREVALAAGEPPAARGFPPSVFAKLPALVERAGNGPEG  308
            ++RD+G  V+LL DS+TRYA A RE+ALAAGE + +  +PP+VF+ LP L+ER+G G   
Sbjct  239  FFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-  297

Query  309  GGSITAFYTVLMEGDDQQDPVADNVRAILDGHIVLSRRLAEQGHFPAIDLQASISRVMPA  368
             GSITAFYTVL+EGDD ++P+AD+VR++LDGHIVLSRRLAE+GH+PAID+ A++SRV P 
Sbjct  298  -GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  369  IATPLELRRMQK-LKEMQSRYASQQDLIAVGAYTPGADLQLDQAVQAHAGIREFLIQDMH  427
            +++  E R++   L+   + Y   + LI +G Y  G D + D+A+++ ++I  FL Q  +
Sbjct  357  VTSH-EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD  415

Query  428  AAVG  431
               G
Sbjct  416  EVCG  419

983) fliI in NC_009778


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  261 bits (974),  Expect = 9e-71, Method: Compositional matrix adjust.
 Identities = 188/428 (44%), Positives = 279/428 (66%), Gaps = 16/428 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCIIERQEGTQLQEVESEVVGFNGQKLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G +L    +EVVG+NG K +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GILPGARVYARSGGGEGLQSSKQLPLGPQLLGRVLDGAGKPLDGLPSPDTETTGALITPP  146
            G+  G +V        +L+   Q+P+G  LLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTAIEDVLDVGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVV  206
              ++ R +I + L  G+R+I+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRVMTAIISEEHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SRV   + S+EH  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDRAITLWPQLEAFLQQGIYERSGVEDAL  446
                +++ L+ +Q    L+ +G Y +G D   D+AI   P++ +FL+Q+  E  G E  +
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLI  424

Query  447  QALELIFP  454
            + L+ I+ 
Sbjct  425  EKLHQILT  432

984) fliI in NC_017933


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  261 bits (974),  Expect = 9e-71, Method: Compositional matrix adjust.
 Identities = 188/428 (44%), Positives = 279/428 (66%), Gaps = 16/428 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCIIERQEGTQLQEVESEVVGFNGQKLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G +L    +EVVG+NG K +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GILPGARVYARSGGGEGLQSSKQLPLGPQLLGRVLDGAGKPLDGLPSPDTETTGALITPP  146
            G+  G +V        +L+   Q+P+G  LLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTAIEDVLDVGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVV  206
              ++ R +I + L  G+R+I+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRVMTAIISEEHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SRV   + S+EH  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDRAITLWPQLEAFLQQGIYERSGVEDAL  446
                +++ L+ +Q    L+ +G Y +G D   D+AI   P++ +FL+Q+  E  G E  +
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLI  424

Query  447  QALELIFP  454
            + L+ I+ 
Sbjct  425  EKLHQILT  432

985) fliI in NC_020260


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  261 bits (974),  Expect = 9e-71, Method: Compositional matrix adjust.
 Identities = 188/428 (44%), Positives = 279/428 (66%), Gaps = 16/428 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCIIERQEGTQLQEVESEVVGFNGQKLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G +L    +EVVG+NG K +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GILPGARVYARSGGGEGLQSSKQLPLGPQLLGRVLDGAGKPLDGLPSPDTETTGALITPP  146
            G+  G +V        +L+   Q+P+G  LLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTAIEDVLDVGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVV  206
              ++ R +I + L  G+R+I+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRVMTAIISEEHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SRV   + S+EH  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDRAITLWPQLEAFLQQGIYERSGVEDAL  446
                +++ L+ +Q    L+ +G Y +G D   D+AI   P++ +FL+Q+  E  G E  +
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLI  424

Query  447  QALELIFP  454
            + L+ I+ 
Sbjct  425  EKLHQILT  432

986) fliI in NC_013282


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  261 bits (975),  Expect = 9e-71, Method: Compositional matrix adjust.
 Identities = 188/428 (44%), Positives = 279/428 (66%), Gaps = 16/428 (3%)

Query  41   RYGRLTRATGLVLEATGLQLPLGATCIIERQEGTQLQEVESEVVGFNGQKLFLMPLEEVE  100
            R GR+   ++ +L+A    + +G  C I  + G +L    +EVVG+NG K +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  101  GILPGARVYARAGLGEGLQSSKQLPLGPQLLGRVLDGAGKPLDGLPSPDTETTGALITPP  160
            G+  G +V        +L+   Q+P+G  LLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  161  FNPLQRTAIEDVLDVGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVV  220
              ++ R +I + L  G+R+I+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  221  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  280
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  281  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGITGGGSITAFY  340
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  341  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRVMTAIISEEHYA  400
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SRV   + S+EH  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  401  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDRAITLWPQLEAFLQQGIYERSGVEDAL  460
                +++ L+ +Q    L+ +G Y +G D   D+AI   P++ +FL+Q+  E  G E  +
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLI  424

Query  461  QALELIFP  468
            + L+ I+ 
Sbjct  425  EKLHQILT  432

987) Sputcn32_3473 in NC_009438


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  260 bits (973),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 181/365 (50%), Positives = 268/365 (74%), Gaps = 5/365 (1%)

Query  59   AEVVGFHRDVLCLMPIEPTQGLMPGARVLPITHEQTIAIgdgllgrvldglgQPLDLFG-  117
            AEVVG++     L P+ +T GL  G +V+++ + + +++G++LLGRV+DG+G+PLD  G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GR  112

Query  118  DLTDVSQVQQSHTSYNPLLRQPIRQPLDVGIRAINSLLPIGRGQRLGLFAGSGVGKSVLL  177
            +L +V   +    +  +++RQPI QPL  GIRAI+S+   G GQR+G+F+++GVGKS LL
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  178  GMMTRFTDADVVVVGLIGERGREVREFIEETLGEEGRKRAVIIAAPADTTPLMRLRAMRL  237
            +M+    DAD  V+ LIGERGREVREFI+ TL+EE RKR VI+ A +D  +L R+RA+ +
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  238  SHSIACAFRDQGKQVLLLVDSLTRYAQAQREIALSLGEPPATKGYPPSAFAQLPRLVEMA  297
            + +IA  FRD+GK+V+LL DSLTRYA+A REIAL+ GE + +  YPP+ F+ LPRL+E +
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  298  GNGEHPTGTLTAFYTVLVEGDDQQDPVADAARAILDGHIVLSRKLAEQGHFPAIDINASV  357
            G GE   G++TAFYTVLVEGDD ++P+AD  R++LDGHIVLSR+LAE+GH+PAID+ A++
Sbjct  293  GMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  358  SRLAMQIATASSIEQSQIFRHILSRYNEVRDLLPLGGYQAGQDPEMDLAVRVYPEMAKFL  417
            SR+   +++    + + I+R+ L+ Y+EV  L+ +G YQ G D + D A+  YP++  FL
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  418  RQTTQ  422
            RQ+ +
Sbjct  411  RQSKD  415

988) Sputw3181_0466 in NC_008750


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  260 bits (973),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 181/365 (50%), Positives = 268/365 (74%), Gaps = 5/365 (1%)

Query  59   AEVVGFHRDVLCLMPIEPTQGLMPGARVLPITHEQTIAIgdgllgrvldglgQPLDLFG-  117
            AEVVG++     L P+ +T GL  G +V+++ + + +++G++LLGRV+DG+G+PLD  G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GR  112

Query  118  DLTDVSQVQQSHTSYNPLLRQPIRQPLDVGIRAINSLLPIGRGQRLGLFAGSGVGKSVLL  177
            +L +V   +    +  +++RQPI QPL  GIRAI+S+   G GQR+G+F+++GVGKS LL
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  178  GMMTRFTDADVVVVGLIGERGREVREFIEETLGEEGRKRAVIIAAPADTTPLMRLRAMRL  237
            +M+    DAD  V+ LIGERGREVREFI+ TL+EE RKR VI+ A +D  +L R+RA+ +
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  238  SHSIACAFRDQGKQVLLLVDSLTRYAQAQREIALSLGEPPATKGYPPSAFAQLPRLVEMA  297
            + +IA  FRD+GK+V+LL DSLTRYA+A REIAL+ GE + +  YPP+ F+ LPRL+E +
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  298  GNGEHPTGTLTAFYTVLVEGDDQQDPVADAARAILDGHIVLSRKLAEQGHFPAIDINASV  357
            G GE   G++TAFYTVLVEGDD ++P+AD  R++LDGHIVLSR+LAE+GH+PAID+ A++
Sbjct  293  GMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  358  SRLAMQIATASSIEQSQIFRHILSRYNEVRDLLPLGGYQAGQDPEMDLAVRVYPEMAKFL  417
            SR+   +++    + + I+R+ L+ Y+EV  L+ +G YQ G D + D A+  YP++  FL
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  418  RQTTQ  422
            RQ+ +
Sbjct  411  RQSKD  415

989) invC in NC_005085


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  260 bits (971),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 192/404 (48%), Positives = 273/404 (68%), Gaps = 17/404 (4%)

Query  14   QRLSGPILEAVLPGVAVGELCEIRRNWQEREVVARAQVVGFQHERAVLSLIGNARGLSRE  73
            Q +S+ +L+A LPGV +GELC I+           A+VVG++  +A+LS + ++ GL   
Sbjct  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  74   AVLQPTGRALSAWVGEEALGAVLDPTGRVVERFSPAAAGGGEA----RDIDSDPPPYSRR  129
              + +  R     VGE  LG       RV++ F+ +  G   +    +D D+ PPP   R
Sbjct  80   QQVMALRRRHQVPVGEALLG-------RVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVR  132

Query  130  VGVREPLATGVRAIDGLLTCGVGQRVGIFASAGCGKTMLMHMLIEQADADVFVIGLIGER  189
              + +PL TG+RAID++ TCG GQRVGIF+++G GK+ L+ ML + +DAD  V+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  190  GREVTEFAEALRGSDKRDRCVLVFATSDFPSVDRCNAALLATTVAEYFRDQGKKVVLFVD  249
            GREV EF +   + + R RCV+V ATSD P+++R  A ++ATT+AE+FRD+GK+VVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  250  SMTRYARALRDVALAAGEPPARRGYPASVFDSLPRLLERPGATGAGSITAFYTVLLESDD  309
            S+TRYARA R++ALAAGE +    YP++VF +LPRLLER G    GSITAFYTVL+E+DD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  310  EPDPMADEIRSILDGHIYLSRKLAGQGHYPAIDVLKSASRVAGQVTDTGqqqaaaaVRGL  369
              +P+ADE+RS+LDGHI LSR+LA +GHYPAIDVL + SRV   VT   ++Q AA +R  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  370  LARLEELQVFIDLGEYRPGENADNDRAMSLRDPLRRWLRQRMDE  413
            LA  +E++++I +GEY+ G ++D D+A+     +   LRQ  DE
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

990) B649_11695 in NC_020505


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  260 bits (972),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 164/371 (45%), Positives = 256/371 (70%), Gaps = 3/371 (0%)

Query  46   VSEISGAEALGMVSEVERNRFFITPFRFVEGFRAGDKVYPNQSGMMIEVGEALLGRVVDP  105
            +  I  +E L+ V  ++ ++ +++PF    G++ G++V + +    + VGEALLGRV+D 
Sbjct  45   LCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDG  104

Query  106  FMNPIDGKGPVSGTHLESIIKAPIAAMKRGMIDEPFSVGVKTIDGLLTCGKGQKLGIFAG  165
            F  P+DG+  ++          P +AM R  I +P+  G+++ID++ TCG GQ++GIF++
Sbjct  105  FGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSA  163

Query  166  SGVGKSTLMGMIVRGADAPIKVVALIGERGREVPEFIEKSLGGNL-ENTVLVVATSDDSP  224
            +GVGKSTL++M+  ++DA  +V+ LIGERGREV EFI+ +L+ +     V+VVATSD ++
Sbjct  164  PGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPA  223

Query  225  LMRKYGAFSAMSVAEYFKAQGHDVLFMMDSVTRFAMAQREIGLALGEPPTSKGYPPSSLT  284
            L R  + F A ++AE+F+ +G  V+++ DS+TR+A A REI+LA GE + S  YPP+ ++
Sbjct  224  LERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFS  283

Query  285  LLPQLMERAGKEEGNGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYP  344
             LP+L+ER+G  E +GSITAF+TVLVEGDDM++P+AD+ RS+LDGHIVLSR L++ G YP
Sbjct  284  ALPRLLERTGMGE-KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  345  PIHILNSASRVMNDIISPEHFAAVRRFRRLYTLLKENEMLIRIGAYVKGTDKELDEAINK  404
            +I++L + SRV   + S EH      +RR  +L +E E+LIRIG Y +G D + D AI+ 
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  405  KEKMEAFLSQG  415
               + +FL Q+
Sbjct  403  YPDICTFLRQS  413

991) fliI in NC_022269


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  260 bits (973),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 178/396 (45%), Positives = 272/396 (69%), Gaps = 5/396 (1%)

Query  43   IGSLCLVETMSGHMEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTSEAGLPVGMELLG  102
            +G LC +   +G+  AEVVG++G + +L P    +G+  G +V +L     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDGLGPLYTDHRASFNAEPINPLARKPISEPLDVGLKAINGLLTVGKGQRI  162
            RVIDG G PLDG   L    +  ++A P  ++ R+PI++PL  G++AI+++ T G GQR+
Sbjct  100  RVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  163  GLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGrrrsvvvaap  222
            G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+E+ R+R V+V A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  223  adaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYP  282
            +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  283  PSVFAKLPALVERAGNGGDDQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMA  342
            P+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR +A
Sbjct  279  PGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  343  DAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAYKPGTDPAI  402
            + GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D   
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  403  DGAFTLKPKLDEYLQQRMKESVPYDMCVNMLKSILG  438
            D A+   P +  +L+Q   E    ++ ++ L  IL 
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

992) fliI in NC_009783


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  260 bits (973),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 178/396 (45%), Positives = 272/396 (69%), Gaps = 5/396 (1%)

Query  43   IGSLCLVETMSGHMEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTSEAGLPVGMELLG  102
            +G LC +   +G+  AEVVG++G + +L P    +G+  G +V +L     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDGLGPLYTDHRASFNAEPINPLARKPISEPLDVGLKAINGLLTVGKGQRI  162
            RVIDG G PLDG   L    +  ++A P  ++ R+PI++PL  G++AI+++ T G GQR+
Sbjct  100  RVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  163  GLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGrrrsvvvaap  222
            G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+E+ R+R V+V A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  223  adaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYP  282
            +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  283  PSVFAKLPALVERAGNGGDDQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMA  342
            P+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR +A
Sbjct  279  PGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  343  DAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAYKPGTDPAI  402
            + GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D   
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  403  DGAFTLKPKLDEYLQQRMKESVPYDMCVNMLKSILG  438
            D A+   P +  +L+Q   E    ++ ++ L  IL 
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

993) fliI in NC_021848


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  260 bits (973),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 179/398 (45%), Positives = 273/398 (69%), Gaps = 9/398 (2%)

Query  43   IGSLCLVETMSGHMEAEVVGFSGDNLYLMPSEQITGILPGAKVTPLTSEAGLPVGMELLG  102
            +G LC +   +G+  AEVVG++G +  L P    +G+  G +V +L     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTEHRASFNAEPINPLARKPISEPLDVGLKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +  ++A P  ++ R+PI++PL  G++AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGrrrsvvva  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+E+ R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  apadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGSPEQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  E+GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAYKPGTDP  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDGAFTLKPKLDEYLQQRMKESVPYDMCVNMLRSILG  438
              D A+   P +  +L+Q   E    ++ ++ L+ IL 
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

994) fliI in NC_004344


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  260 bits (973),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 177/433 (41%), Positives = 280/433 (65%), Gaps = 18/433 (4%)

Query  10   DKINHKESLIYDIPD-YFQYGKLVRATGMVMEAIGLQLPIGSTCFIEKKEENSITNIECE  68
            + + ++  L Y  PD Y + G++   ++ +++A    + +G  C I   EE +      E
Sbjct  3    NELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA------E  56

Query  69   VVGFNGQNLFLMPLEGVDGICPGARVHSQDLYNSKISTRLLPIGYSLLGRVLNSSGKFLD  128
            VVG+NG + +L P+ +  G+      H  +   +    + +P+G +LLGRV+++ G+ LD
Sbjct  57   VVGINGSKALLSPFTSTAGL------HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  129  KLPVPKTYKKKSLY-TKPINPLLRDPIKKVLDVGVRAINGLLTVGIGQRMGIFSGSGVGK  187
               +P    K   Y + P  +++R+PI + L  G+RAI+++ T G GQR+GIFS++GVGK
Sbjct  111  GRELPEVCWKD--YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGK  168

Query  188  SILLGMMAKYTKADIIVVGLIGERGREVKDFIENILGEKGISRSVVIAAPADVSPMLRIQ  247
            S LL+M+ +   AD  V+ LIGERGREV++FI+  L+E    R V++ A +D +++ R++
Sbjct  169  STLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR  228

Query  248  GAIYATRIAEYFRDKGKHVLLIMDSLTRYAMAQREISLAIGEPPATKGYPPSVFAKLSEL  307
            + + AT IAE+FRD+GK+V+L+ DSLTRYA A REI+LA GE + +  YPP+VF+ L+ L
Sbjct  229  ALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRL  288

Query  308  VERTGNGTDNKGSITAFYTVLTEGDDQQDPIADSSRSILDGHIVLSRFLSESGHYPSIDI  367
            +ERTG G  +KGSITAFYTVL EGDD ++P+AD  RS+LDGHIVLSR L+E GHYP+ID+
Sbjct  289  LERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDV  346

Query  368  ESSISRTMSNIVTESHFKCVQKVKQLISSYQKNRDLLSVGAYSSGSDPILDIAIKNYPKI  427
             +++SR  + + ++ H +    +++ ++ YQ    L+ +G Y  G D   D AI  YP I
Sbjct  347  LATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDI  406

Query  428  EKYLKQDLNQSCS  440
              +L+Q  ++ C+
Sbjct  407  CTFLRQSKDEVCG  419

995) D781_2723 in NC_020064


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  260 bits (971),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 188/437 (44%), Positives = 282/437 (65%), Gaps = 17/437 (3%)

Query  19   RIQHAPPV--RRYGRLTRATGLVLEATGLQMPLGATCLIERHCAGEIQEVESEVVGFNGQ  76
            R++ +PP    R GR+   ++ +L+A    + +G  C     C    +E+ +EVVG+NG 
Sbjct  10   RLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELC-----CIKPGEEL-AEVVGINGS  63

Query  77   HLFLMPLEDVEGIVPGARVYARLAPEGQSAGKQLPLGPALLGRVLDGGAKPLDGLPAPET  136
              +L P+    G+  G +V       +     Q+P+G ALLGRV+DG ++PLDG   PE 
Sbjct  64   KALLSPFTSTAGLHCGQQV------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV  117

Query  137  GYRAPLATAPFNPLQRTPIEQVLDVGVRTINGLLTVGRGQRMGLFAGSGVGKSVLLGMMA  196
              +    + P  ++ R PI Q L  G+R+I+++ T G GQR+G+F+++GVGKS LL+M+ 
Sbjct  118  CWKD-YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC  176

Query  197  RYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRI  256
               +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT I
Sbjct  177  NAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTI  236

Query  257  AEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGI  316
            AE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G 
Sbjct  237  AEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG-  295

Query  317  SGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRRLAESGHYPAIDIEASISRAM  376
               GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++SR  
Sbjct  296  -EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVF  354

Query  377  TALIDQDHYRRVRDFKQMLASYQRNRDLISVGAYAAGSDPLLDKAMTLYPQMEAYLQQGI  436
              +  ++H +    +++ LA YQ    LI +G Y  G D   DKA+  YP++ ++L+Q+ 
Sbjct  355  PVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

Query  437  FERSGYDEACQQLQQLI  453
             E  G +   ++L+Q++
Sbjct  415  DEVCGPELLIEKLHQIL  431

996) fliI in NC_012962


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (968),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 177/372 (48%), Positives = 249/372 (67%), Gaps = 10/372 (2%)

Query  67   SEVVGFNGDKLLLMPLEDLEGIVPGARVYSRPYSGEDCSSGRQLPLGPELLGRVLDGAGR  126
            +EVVG+NG K LL P+    G+  G +V +           +Q+P+G  LLGRV+DG GR
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMAL-------RRRHQVPVGEALLGRVIDGFGR  107

Query  127  PLDGFPSPDTGYRAPLTTPPINPLQRTPISEVLDVGVRAINALLTVGRGQRMGLFAGSGV  186
            PLDG   P+   +   + PP  ++ R PI++ L  G+RAI+++ T G GQR+G+F+++GV
Sbjct  108  PLDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGV  166

Query  187  GKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGATGLARSVVVAAPADISPLLR  246
            GKS LL+M+    +AD  V+ LIGERGREV++FI+  L+     R V+V A +D ++L R
Sbjct  167  GKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALER  226

Query  247  MQGASYATRIAEDFRDRGKHVLLIMDSLTRYSMAQREIALAIGEPPATKGYPPSVFAKLP  306
            +++   AT IAE FRD GK+V+L+ DSLTRY+ A REIALA GE + +  YPP+VF+ LP
Sbjct  227  VRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALP  286

Query  307  ALVERAGNGVNGGGSITAFYTVLTEGDDQQDPIADAARAILDGHIVLSRSLAESGHYPAI  366
             L+ER+G G +  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR LAE GHYPAI
Sbjct  287  RLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI  344

Query  367  DIEASISRAMTSLINKQHYRQVQQFKQLLASYQRNRDLINVGAYAAGSDPLLDKAIELYP  426
            D+ A++SR    + + +H +    +++ LA YQ    LI +G Y  G D   DKAI+ YP
Sbjct  345  DVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  427  YMAQFLQQDIEE  438
             +  FL+Q  +E
Sbjct  405  DICTFLRQSKDE  416

997) SG2088 in NC_007712


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (969),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 185/401 (47%), Positives = 278/401 (70%), Gaps = 12/401 (2%)

Query  17   LSGPIIEAALPEVAVGEICEIRRHWRSREVIAHAQVLGFHHERTVLSLIGAAHGLSREIL  76
            +S+ +++A LP V +GE+C I+    + E+   A+V+G++  +++LS + ++ GL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKP---GEEL---AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  77   LHPTGGPLRVEVGDALLGTIIQPSGRISERLAPPPVRCNREWRAIDAPAPDYRQRAGVRQ  136
            + +     +V VG+ALLG +I+  GR  +    P V C   W+  DA +P    R  + Q
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV-C---WKDYDAMPPPAMVRQPITQ  137

Query  137  PFITGIRAFDGLLTCGIGQRVGIFSSAGCGKTMLMHQLIAQSDAEVFVIGLVGERGREVT  196
            P++TGIRA+D++ TCG GQRVGIFS++G GK+ L+  L   +DA+  V+ L+GERGREV 
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  197  EFVE-TLRHSPRRHQCVLVYATSNYASLERCNAALVATTVAEYFRDQGRRVVLFLDSLTR  255
            EF++ TL +  R++ CV+V ATS+ ++LER  A +VATT+AE+FRD+G+RVVL+ DSLTR
Sbjct  198  EFIDFTLSEETRKR-CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  256  FARALRDVALAAGEAPARRGYPASVFDALPRVLERPGNSLSGSITAFYTVLLEGDDEPDP  315
            +ARA R++ALAAGE++    YP++VF ALPR+LER G +  GSITAFYTVL+EGDD  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  316  IADEIRSILDGHIYLSRKLSAASHYPAIDILHSASRVAGQVTDARQQALAGAMRGLLTRL  375
            +ADE+RS+LDGHI LSR+L+  +HYPAID+L + SRV   VT   ++ LA+ +R  L+  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  376  EEMQTLIDLGEYRLGDNAENDRAHAQKQALWDFLRQDADQA  416
            +E++ LI +GEY+ G +++ D+A      +  FLRQ  D+ 
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEV  417

998) fliI in NC_012912


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (969),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 187/421 (45%), Positives = 273/421 (65%), Gaps = 25/421 (5%)

Query  27   RYGRLTRATGLVLEA--TGLHMPLGSTCLIERQTGNQIDEVESEVVGFNGQKLFLMPLEE  84
            R GR+   ++ +L+A   G+ M  G  C I  + G+++    +EVVG+NG K +L P+  
Sbjct  21   RWGRIQDVSATLLNAWLPGVFM--GELCCI--KPGEEL----AEVVGINGSKALLSPFTS  72

Query  85   VEGIIPGARVYERVGLSGSSQGKQLPLGPALLGRVLDGSAKPLDGLPAPETGYRASLATA  144
              G+  G +V   ++L    +  Q+P+G ALLGRV+DG ++PLDG   PE   +    + 
Sbjct  73   TAGLHCGQQV---MALR---RRHQVPVGEALLGRVIDGFGRPLDGRELPEV-CWKDYDAM  125

Query  145  PFNPLQRTPIEHVLDVGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIV  204
            P  ++ R PI + L  G+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V
Sbjct  126  PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV  185

Query  205  VGLIGERGREVKDFIENILGTEGLARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGH  264
            + LIGERGREV++FI+  L+ E   R V++ A +D ++L R+++   AT IAE FRD G 
Sbjct  186  LVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGK  245

Query  265  HVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAF  324
            +V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAF
Sbjct  246  RVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAF  303

Query  325  YTVLTEGDDQQDPIADSARAILDGHIVLSRQLAESGHYPAIDIEASISRAMTALIDENHY  384
            YTVL EGDD ++P+AD  R++LDGHIVLSR+LAE GHYPAID+ A++SR    +  ++H 
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  385  SAVRQFKQSLSSYQRNRDLINVGAYAAGSDPMLDRAIQLYPHMQHFLQQGMFERSSFDEA  444
                 +++ L+ YQ    LI +G Y  G D   D+AI+ YP++  FL+Q+       DE 
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK------DEV  417

Query  445  C  445
            C
Sbjct  418  C  418

999) fliI in NC_012039


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (969),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 174/418 (42%), Positives = 276/418 (67%), Gaps = 8/418 (1%)

Query  3    LEKLRSKIASQNLTSVFGQITKISSTSIEINGLKTSIGDIIKIVSSEDESKEAMAMVVEV  62
            +++LR K ++ +     G+I  +S+T ++       +G++  I ++E+     +A VV +
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   DENLSYLSPFGFVEGFKIGDRAFINDAGMQIGVSDELLGRVVDPFMRPKDGKGPIEASKF  122
            + + + LSPF    G+  G++        Q+ V++ LLGRV+D F RP DG+   E    
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-W  119

Query  123  MPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVKNS  182
                  P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ + +
Sbjct  120  KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAP  179

Query  183  KAPIKVIALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVAEY  241
             A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++AE+
Sbjct  180  DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEF  239

Query  242  FKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEGKG  301
            F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E KG
Sbjct  240  FRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KG  298

Query  302  TITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMGDII  361
            +ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV   + 
Sbjct  299  SITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVT  358

Query  362  SDEHKLAARKFKRLNSLLKENEVLLRIGAYQKGTDKELDQAIAKKDFMQQFLSQNPEE  419
            S+EH+  A  ++R  +L +E E+L+RIG YQ+G D + D+AI     +  FL Q+ +E
Sbjct  359  SHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1000) fliI in NC_007645


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (968),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 183/362 (51%), Positives = 256/362 (71%), Gaps = 3/362 (0%)

Query  59   AEVVGFSDERVYLMPLAAVEGLQPGAKVKPMSGVGRIGVGACLLGRVLDGAGEPLDGRGP  118
            AEVVG+++ +  L P+++  GL+ G +V ++    ++ VG  LLGRV+DG G PLDGR  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  119  LQAEHHVELFGAPINPLHRAPIREKLDVGIRAINSLLTVGIGQRLGLFAGSGVGKSMLLG  178
            L      +  + P  ++ R PI + L  GIRAI+S+ T G GQR+G+F+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  179  MMTRFTTADIIvvglvgergrevKEFIEDILGEEGLRRAVVVASPADDSPLMRLRAAVLT  238
            M+     AD  V+ L+GERGREV+EFI+  L+EE  +R V+V + +D ++L R+RA  ++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  239  TRIAEYFRDLGKNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPQLVERAG  298
            T IAE+FRD GK V+LL DSLTRYA+A REIALA GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  299  NGKPGGGSITAFYTVLTEGDDQQDPIADAARAILDGHIVLNRRLAEEGHYPAIDVEASIS  358
             G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVL+RRLAE GHYPAIDV A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  359  RVMPQVTTPDYLQRAQRFKQLYARYQQTRDLISVGAYAPGSDKETDYAIERFPHMRKFLQ  418
            RV P VT+ +  Q A  +++  A YQ+   LI +G Y  G D +TD AI+ +P++  FL+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  419  QS  420
            QS
Sbjct  412  QS  413

1001) rhcN in NC_000914


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (968),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 202/403 (51%), Positives = 295/403 (74%), Gaps = 5/403 (1%)

Query  36   RGRITRAVGTLIHAVLPEARIGELCLLQDTRTGLSLEAEVIGLLDNGVLLTPIGGLAGLS  95
            +GRI    +TL++A LP   +GELC     + G  L AEV+G+ ++  LL+P+ + AGL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELC---CIKPGEEL-AEVVGINGSKALLSPFTSTAGLH  77

Query  96   SRAEVVSTGRMREVPIGPDLLGRVIDSRCRPLDGKGEVKTTEVRPLHGRAPNPMTRRMVE  155
               +V++  R ++VP+G  LLGRVID+  RPLDG+ E+     +  ++ +P +M R+ + 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPIT  136

Query  156  RPFPLGVRALDGLLTCGEGQRIGIYGEPGGGKSTLISQIVKGAAADVVIVALIgergrev  215
            +P+  G+RA+D++ TCGEGQR+GI++ PG GKSTL++ + +++ AD  ++ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  216  refverHLGEEGLRRAIVVVETSDRSATERAQCAPMATALAEYFREQGLRVALLLDSLTR  275
            REF++  L+EE  +R ++VV TSDR+A ER +   +AT++AE+FR++G RV LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  276  FCRAMREIGLAAGEPPTRRGFPPSVFaalpglleraglgergSITAFYTVLVEGDGTGDP  335
            + RA REI+LAAGE +    +PP+VF+ALP LLER+G+GE+GSITAFYTVLVEGD+  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  336  IAEESRGILDGHIVLSRALAARSHFPAIDVLQSRSRVMDAVVSETHRKAASFFRDLLARY  395
            +A+E R++LDGHIVLSR LA R+H+PAIDVL + SRV   V S+ HR+ A+++R  LA Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  396  AECEFLINVGEYKQGGDPLTDRAVASIGELKEFLRQSEDEVSD  438
             E E+LI +GEY++G D  TD+A+ +  ++  FLRQS DEV +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

1002) R2APBS1_2994 in NC_020541


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (968),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 188/382 (50%), Positives = 267/382 (70%), Gaps = 8/382 (2%)

Query  70   TEVVGFADERLLLMPVGDMHGVLPNARVRPYARSGGLPVGMGLLGRVIGADGVPLDG--L  127
            +EVVG+ + + LL P     G+    +V +  R   +PVG +LLGRVI++ G PLDG  L
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  128  GALEADEHAALKREPINPMARKPIDAPLDVGVRAINALLTVGRGQRLGLFAGSGVGKSTL  187
              +   +  A+   P  +M R+PI  PL  G+RAI+++ T G GQR+G+F+++GVGKSTL
Sbjct  115  PEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  188  LGMMTRYTNADVVVVGLIGERGREVKEFVEHTLGEEGrrravivaapadappLKRLRGAQ  247
            L+M+    +AD  V+ LIGERGREV+EF++ TL+EE R+R VIV A +D P+L R+R+  
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  248  YATAIAEWFRDRGQRVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAMMPALVER  307
             AT+IAE FRD G+RV+LL DSLTRYA+A REIALA GE + +  YPP+VF+ +P L+ER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  308  AGNDADGRGSITAFYTVLTEGDDYRHDPIADAARAILDGHIVLSRDLAEAGHYPAIDIEA  367
            +G   + +GSITAFYTVL EGDD  ++P+AD  R++LDGHIVLSR LAE GHYPAID+ A
Sbjct  292  TG--MGEKGSITAFYTVLVEGDD-MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLA  348

Query  368  SISRVMPAVVAREHLRAAQCFRQVYSAYRQQRDLIAVGAYQKGSDPQVDQAIELWPQLRA  427
            ++SRV P V ++EH + A  +R+  + Y++   LI +G YQ+G D + D+AI+  P++ +
Sbjct  349  TLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  428  FLQQEVDEPMTLEAAVGKLDAL  449
            FL+Q  DE    E  + KL+ +
Sbjct  409  FLRQSKDEVCGPELLIEKLHQI  430

1003) fliI in NC_010338


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 179/387 (47%), Positives = 260/387 (68%), Gaps = 11/387 (2%)

Query  55   AEVVGFRETRALLMPFGPVEGVAPGAEIKIMPEGAVVRPTKAWLGRIINAFGEPIDGLGP  114
            AEVVG+  ++ALL PF +  G+  G ++  +     V    A LGR+I++FG P+DG   
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RE  113

Query  115  LPQGEVPYP-LKTPPPPAHARGRVGERLDLGVRSMNVFTTTCRGQRLGIFAGSGVGKSVL  173
            LP  EV      + PPPA  R  + + L  G+R+++  +T   GQR+GIF+++GVGKS L
Sbjct  114  LP--EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  174  LSMLAKEATCDAVVVGLIGERGREVREFIEETLGEEGLKRAIVVVATSDEPALTRRQAAY  233
            L+ML + +  D+ V+ LIGERGREVREFI+ TL+EE  KR ++VVATSD PAL R +A +
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  234  MTLAICEYLRDQDQEVLCLMDSVTRFAMAQREIGLAAGEPPTTKGYTPTVFTELPKLLER  293
            ++ +I E++RD+++ V+ L DS+TR+A A REI+LAAGE + +  Y P VF+ LP+LLER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  294  AGPGPIRADGTTAGPITALFTVLVDGDDHNEPIADATRGILDGHIVMERAIAERGRFPAI  353
            +G G         G+ITA++TVLV+GDD NEP+AD  R++LDGHIV+ R +AERG++PAI
Sbjct  292  TGMG-------EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI  344

Query  354  NVLKSISRTMPGCQTPEEREVVKAARQTMAAYSNMEELIRIGAYRAGADPIIDRAIRLNP  413
            +VL ++SR  P   + E+R++    R+ +A Y ++E LIRIG Y+ G D   D+AI   P
Sbjct  345  DVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  414  AIEAFLGQDKDEATSLDDSFGYLAHIL  440
             I +FL Q KDE  + +  +  L +IL
Sbjct  405  DICTFLRQSKDEVCGPELLIEKLHQIL  431

1004) Sbal175_0434 in NC_017571


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (968),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 179/381 (47%), Positives = 272/381 (72%), Gaps = 3/381 (0%)

Query  55   AEVVGFHRDVLCLMPIEPTQGLMPGARVLPITDEQTIAIgdgllgrvldglgQPLDSLGD  114
            AEVVG++     L P+ +T GL  G +V+++   + +++G++LLGRV+DG+G+PLD+  +
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RE  113

Query  115  LTDISQVSQSHTSYNPLLRQPIRQPLDVGIRAINSLLPIGRGQRLGLFAGSGVGKSVLLG  174
            L ++        +  +++RQPI QPL  GIRAI+S+   G GQR+G+F+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  175  MMTRFTEADVVVVGLIGERGREVREFIEETLGEEGRKRAVIIAAPADTTPLMRLRAMRLS  234
            M+    +AD  V+ LIGERGREVREFI+ TL+EE RKR VI+ A +D  +L R+RA+ ++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  235  HSIACAFRDQGKQVLLLVDSLTRYAQAQREIALSLGEPPATKGYPPSAFAQLPRLVEMAG  294
             +IA  FRD+GK+V+LL DSLTRYA+A REIAL+ GE + +  YPP+ F+ LPRL+E +G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  295  NGEHPTGTLTAFYTVLAEGDDQQDPVADAARAILDGHIVLSRKLAEQGHFPAIDINASVS  354
             GE   G++TAFYTVL EGDD ++P+AD  R++LDGHIVLSR+LAE+GH+PAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  355  RLAMHIATSSSIEQSQIFRHLLSRYNEVRDLLPLGGYQAGQDPEMDLAVRVYPEMARFLR  414
            R+   +++    + + I+R+ L+ Y+EV  L+ +G YQ G D + D A+  YP++  FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  415  QTTHSKVNLAESLAQLEQLMG  435
            Q+ +        + +L+Q++ 
Sbjct  412  QSKDEVCGPELLIEKLHQILT  432

1005) fliI in NC_008258


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 173/371 (47%), Positives = 254/371 (69%), Gaps = 14/371 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGK  126
            +EVVG+NG + +L P+    G+  G +V        +L+   Q+P+G ALLGRV+DG G+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGR  107

Query  127  PLDGLPFPDTT--ETGALITPPFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGS  184
            PLDG  +P+    + +A+  P+   + R PI + L TG+R+I+++ T G GQR+G+F+++
Sbjct  108  PLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  185  GVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPL  244
            GVGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  245  LRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAK  304
             R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  305  LPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYP  364
            LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYP
Sbjct  285  LPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  365  AIDIEASISRAMTALISEQHYARVRTFKQLLSSFQHNRDLVSVGAYAKGSDPMLDKAIAL  424
            AID+ A++SR    + S++H      +++ L+ +Q+   L+ +G Y +G D   DKAI  
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  425  WPQLEGYLQQG  435
             P++  +L+Q+
Sbjct  403  YPDICTFLRQS  413

1006) Sbal117_4134 in NC_017579


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 190/418 (46%), Positives = 290/418 (70%), Gaps = 8/418 (1%)

Query  19   YGRLIRVNGLLLEAVGCQLGMGDSCQIEGRNGRLIEAEVVGFH-RDVLCLMPIEPTQGLM  77
             GR+  V++ LL+A    + MG+ C I   +     AEVVG++    L L P+ +T GL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKAL-LSPFTSTAGLH  77

Query  78   PGARVLPITDEQTIAIgdgllgrvldglgQPLDSLGDLTDISQVPQSHTSYNPLLRQPIR  137
             G +V+++   + +++G++LLGRV+DG+G+PLD+  +L ++        +  +++RQPI 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPIT  136

Query  138  QPLDVGIRAINSLLPIGRGQRLGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREV  197
            QPL  GIRAI+S+   G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  198  REFIEETLGEEGRKRAVIIAAPADTTPLMRLRAMRLSHSIACAFRDQGKQVLLLVDSLTR  257
            REFI+ TL+EE RKR VI+ A +D  +L R+RA+ ++ +IA  FRD+GK+V+LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  258  YAQAQREIALSLGEPPATKGYPPSAFAQLPRLVEMAGNGEHPTGTLTAFYTVLAEGDDQQ  317
            YA+A REIAL+ GE + +  YPP+ F+ LPRL+E +G GE   G++TAFYTVL EGDD +
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMN  314

Query  318  DPVADAARAILDGHIVLSRKLAEQGHFPAIDINASVSRLAMHIATSSSIEQSQIFRHLLS  377
            +P+AD  R++LDGHIVLSR+LAE+GH+PAID+ A++SR+   +++    + + I+R+ L+
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  378  RYNEVRDLLPLGGYQAGQDPEMDLAVRVYPEMARFLRQTTHSKVNLAESLAQLEQLMG  435
             Y+EV  L+ +G YQ G D + D A+  YP++  FLRQ+ +        + +L+Q++ 
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1007) fliI in NC_011144


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (968),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 187/426 (44%), Positives = 281/426 (66%), Gaps = 16/426 (3%)

Query  18   GRVAAVNGLLIEARGGLTRLAVGARAEIARFGHDPLAAEVVGFRDTRALLMPFGPVEGVA  77
            GR+  V++ L++A+     L+    +E+  +  +   AEVVG+ +++ALL PF +  G+ 
Sbjct  23   GRIQDVSATLLNAW-----LPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLH  77

Query  78   PGAEIRIEPQGSAVRPTRAWLGRTVDAFGNPIDGKGPLPQG-LASYPLrapppaaharar  136
             G ++    +   V    A LGR +D+FG P+DG+  LP+     Y   A PP+A  R  
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDY--DAMPPPAMVRQP  134

Query  137  VGERLDLGVRAMNVFTTCCRGQRLGVFAGSGVGKSVLLSMLAKNADCDAVVVGLIGERGR  196
            + + L  G+RA++  +TC  GQR+G+F+++GVGKS LL+ML + +D D+ V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  197  EVREFIEETLGEEGLKRAIVVVATSDEPALKRRQAAYMTMAIAEFLRDQDLEVLCLMDSV  256
            EVREFI+ TL+EE  KR ++VVATSD PAL R +A +++ +IAEF+RD++  V+ L DS+
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  257  TRFAMAQREIGLAAGEPPTTKGYTPTVFTELPKLLERAGPGPIRPDGTRAGPITGLFTVL  316
            TR+A A REI+LAAGE + +  Y P VF+ LP+LLER+G G         G+IT+++TVL
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-------KGSITAFYTVL  307

Query  317  VDGDDHNEPIADAVRGILDGHIVMERAIAERGRFPAINVLKSISRTMPGCQQPHEREVVK  376
            V+GDD NEP+AD VR++LDGHIV+ R +AERG++PAI+VL ++SR  P     ++R++  
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  377  QARQALSAYANMEELIRIGAYRAGADPLIDRAIELNPSLEAFLSQDPDDATGLEESFAGL  436
              R+ L+ Y ++E LIRIG Y+ G D   D+AI+  P + +FL Q  D+  G E  +  L
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

Query  437  AMILGQ  442
              IL +
Sbjct  428  HQILTE  433

1008) fliI in NC_011601


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (966),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 173/371 (47%), Positives = 254/371 (69%), Gaps = 14/371 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGK  126
            +EVVG+NG + +L P+    G+  G +V        +L+   Q+P+G ALLGRV+DG G+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGR  107

Query  127  PLDGLPFPDTT--ETGALITPPFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGS  184
            PLDG  +P+    + +A+  P+   + R PI + L TG+R+I+++ T G GQR+G+F+++
Sbjct  108  PLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  185  GVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPL  244
            GVGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  245  LRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAK  304
             R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  305  LPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYP  364
            LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYP
Sbjct  285  LPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  365  AIDIEASISRAMTALISEQHYARVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIAL  424
            AID+ A++SR    + S++H      +++ L+ +Q    L+ +G Y +G D   DKAI  
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  425  WPQLESYLQQG  435
             P++ ++L+Q+
Sbjct  403  YPDICTFLRQS  413

1009) M301_1005 in NC_014207


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (966),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 200/436 (46%), Positives = 279/436 (64%), Gaps = 28/436 (6%)

Query  71   GRITKLTGLVMEAAGIKLPIGSACYVPLAEGRRVEAEVVGFDGERMLLMPQSSVDGVMPG  130
            GRI  +++ +++A    + +G  C +  +E     AEVVG++G + LL P +S  G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  131  AKVFALEVAEALPKPHHGNPPRRRVTDRARHLPVGNELLGRVVDGAGNPLDDLGKIVAAQ  190
             +V AL               RRR     +++PVG+ LLGRV+DG G PLD  G+ ++  
Sbjct  80   QQVMAL---------------RRR-----HQVPVGEALLGRVIDGFGRPLD--GRELPEV  117

Query  191  SSP-LNARPMNPLMRAPIEEILDVGVRAINSMLTVGRGQRMGLFAGSGVGKSVLLGMMAR  249
                 +A P  +++R PI + L  G+RAI+S+ T G GQR+G+F+++GVGKS LL+M+  
Sbjct  118  CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  250  YTTADVIVVGLIGERGREVQEFIEQILGPVGLARSvvvaapadapaLMRLQGANYATTIA  309
               AD  V+ LIGERGREV+EFI+  L+     R V+V A +D PAL R+++   ATTIA
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  310  ENFRDQGKNVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERTGNGKR  369
            E FRD+GK V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ERTG G +
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK  297

Query  370  GEGSITAFYTVLTEGDDQQDPIADAARAILDGHIVLSRSLAESGHYPAIDVEQSISRAMH  429
              GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR LAE GHYPAIDV  ++SR   
Sbjct  298  --GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFP  355

Query  430  NITSPEHQKLARKLKQLNSRYMRSVDLINVGAYEAGSDAVLDQAIARHDKIDAFLQQGIS  489
             +TS EH++LA  L++  + Y     LI +G Y+ G D+  D+AI     I +FL+Q+  
Sbjct  356  VVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD  415

Query  490  ERSGVEESIGHLAHVL  505
            E  G E  I  L ++L
Sbjct  416  EVCGPELLIEKLHQIL  431

1010) EAM_1561 in NC_013971


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (966),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 177/415 (43%), Positives = 275/415 (67%), Gaps = 26/415 (6%)

Query  8    RLAHPLRIQGNVIEAYLPDTKIGEICEIQKSLVESQVLGLAQVTGFNKEHTFLSLLTDSQ  67
            R ++   + + +++A LP+  +GE+C I+ +        LA+V G+N   ++LS +T + 
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE------ELAEVVGINGSKALLSPFTSTA  74

Query  68   GFSRENVLLATGKPLRVDVHQGISGAIIDATGIIRGRLDDVPVTPLTGTKSIMACGAARD  127
            G+   + ++A  +  +V V +++ G +ID+ G            PL G      C   +D
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFG-----------RPLDGRELPEVC--WKD  121

Query  128  FS-------LRKTITEPLLTGIRAIDGLLTCGQGQRVGIFATAGCGKTSLMNMLIEHSQA  180
            +        +R+ IT+PL+TGIRAID++ TCG+GQRVGIF+++G GK++L+ ML + ++A
Sbjct  122  YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA  181

Query  181  DIYVIGLIGERGREVTEFVESMRHSSRRSRVILVYATSDRSSVERTNAAQIASSIAEYFS  240
            D  V+ LIGERGREV EF++       R R ++V ATSDR+++ER  A  +A++IAE+F 
Sbjct  182  DSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFR  241

Query  241  DMGKNVLLFIDSITRYARALRDVALSMGEMPARRGYPASVFEALPKLLERPGCFITGTIT  300
            D GK V+L+ DS+TRYARA R++AL+ GE +    YP++VF ALP+LLER G    G+IT
Sbjct  242  DNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSIT  301

Query  301  AFYTVLIENEEEPDIIGDEVRSILDGHIYLSRKLAAKGHYPAINVLNSLSRVFSQVTNCH  360
            AFYTVL+E ++  + ++DEVRS+LDGHI LSR+LA +GHYPAI+VL +LSRVF+ VT+ +
Sbjct  302  AFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHE  361

Query  361  QQQMANSFRDLLQRQSEMQLFIDLGEYRRGENEKNDIAIDKSIQMEAFLKQDVTE  415
            ++Q+A  +R  L    E++L+I +GEY+RG +   D AID   ++ +FL+Q   E
Sbjct  362  HRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1011) spaI3 in NC_013961


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  259 bits (966),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 177/415 (43%), Positives = 275/415 (67%), Gaps = 26/415 (6%)

Query  8    RLAHPLRIQGNVIEAYLPDTKIGEICEIQKSLVESQVLGLAQVTGFNKEHTFLSLLTDSQ  67
            R ++   + + +++A LP+  +GE+C I+ +        LA+V G+N   ++LS +T + 
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGE------ELAEVVGINGSKALLSPFTSTA  74

Query  68   GFSRENVLLATGKPLRVDVHQGISGAIIDATGIIRGRLDDVPVTPLTGTKSIMACGAARD  127
            G+   + ++A  +  +V V +++ G +ID+ G            PL G      C   +D
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFG-----------RPLDGRELPEVC--WKD  121

Query  128  FS-------LRKTITEPLLTGIRAIDGLLTCGQGQRVGIFATAGCGKTSLMNMLIEHSQA  180
            +        +R+ IT+PL+TGIRAID++ TCG+GQRVGIF+++G GK++L+ ML + ++A
Sbjct  122  YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA  181

Query  181  DIYVIGLIGERGREVTEFVESMRHSSRRSRVILVYATSDRSSVERTNAAQIASSIAEYFS  240
            D  V+ LIGERGREV EF++       R R ++V ATSDR+++ER  A  +A++IAE+F 
Sbjct  182  DSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFR  241

Query  241  DMGKNVLLFIDSITRYARALRDVALSMGEMPARRGYPASVFEALPKLLERPGCFITGTIT  300
            D GK V+L+ DS+TRYARA R++AL+ GE +    YP++VF ALP+LLER G    G+IT
Sbjct  242  DNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSIT  301

Query  301  AFYTVLIENEEEPDIIGDEVRSILDGHIYLSRKLAAKGHYPAINVLNSLSRVFSQVTNCH  360
            AFYTVL+E ++  + ++DEVRS+LDGHI LSR+LA +GHYPAI+VL +LSRVF+ VT+ +
Sbjct  302  AFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHE  361

Query  361  QQQMANSFRDLLQRQSEMQLFIDLGEYRRGENEKNDIAIDKSIQMEAFLKQDVTE  415
            ++Q+A  +R  L    E++L+I +GEY+RG +   D AID   ++ +FL+Q   E
Sbjct  362  HRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1012) swp_1523 in NC_011566


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (965),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 184/382 (49%), Positives = 269/382 (71%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMSGELVAEVIGFDDELLYLMPIEELSGVLPGAKVTPLGQQSGLSVGLALLG  106
            +G LC I   +GE +AEV+G+++    L P+   +G+  G +V +L ++  ++VG ALLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGSGLPIDG--LGNLQTDQKAPTHAPAINPLARRAISEPLDVGVRAINSMLTVGKGQ  164
            RV+DG G P+DG  L ++   +  +  +PA   + R++I++PL  G+RAI+S+ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGPEGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+ E R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDMGYSVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPKLVERAGNGGGKQGSITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRS  344
            YPP+VF+ LP+L+ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVITTEHLEAMRRVKQVYSLYQQNKDLISIGAYTQGSDP  404
            LA+ GHYPAID+ A++SRV P+V + EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMKD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1013) fliI in NC_018405


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (965),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 175/371 (48%), Positives = 253/371 (69%), Gaps = 14/371 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYAKNISGDGLQSGKQLPLGPALLGRVLDGSGK  126
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  127  PLDGLPAPDTT--ETGALITQPFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGS  184
            PLDG   P+    + +A+   P  ++ R PI + L TG+R+I+++ T G GQR+G+F+++
Sbjct  108  PLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  185  GVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPL  244
            GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  245  LRMQGAAYATRIAEDFRDRGKHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAK  304
             R+++   AT IAE FRD GK+V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  305  LPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYP  364
            LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYP
Sbjct  285  LPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  365  AIDIEASISRAMTALITEKHYARVRNFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAISL  424
            AID+ A++SR    + ++ H      +++ L+ +Q    L+ +G Y +G D   DKAI  
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  425  WPQLEAFLQQG  435
             P++ +FL+Q+
Sbjct  403  YPDICTFLRQS  413

1014) fliI in NC_011420


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (965),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 173/366 (48%), Positives = 259/366 (71%), Gaps = 7/366 (1%)

Query  60   EVVGFRAGKALLMPFGTLDDIGLGCRAEVAE--GQPAITPTTGWLGRVVNALGEPIDGKG  117
            EVVG+ ++KALL PF +    GL C  +V     +  +    + LGRV++++G P+DG+ 
Sbjct  56   EVVGINGSKALLSPFTS--TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE  113

Query  118  PLPQGprptpiraspppaharrrVGGKIDLGVRAINTFLTCCKGQRMGIFAGSGVGKSVL  177
             LP+        A PPPA  R+ +   +  G+RAI++  TC  GQR+GIF+++GVGKS L
Sbjct  114  -LPE-VCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  178  MSMLAKYTAAQVSVIGLIGERGREVQEFLEADLGPEGLARSVVVVATSDEPPLMRRQAAY  237
            ++ML +   A+ +V+ LIGERGREV+EF++  L+ E   R V+VVATSD P+L R +A +
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  238  MTMAVAEFFRDEGQDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYPPTVFAELPRLLER  297
            ++ ++AEFFRD+G+ V+ L DS+TR+A A REI+L+AGE + +  YPP VF+ LPRLLER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  298  AGPGTGEGTISGLFTVLVEGGDMEEPIADAVRGILDGHIVMERRIGERGRYPAINILRSV  357
            +G G   G+I++++TVLVEG+DM+EP+AD VR++LDGHIV+ RR++ERG+YPAI++L ++
Sbjct  292  TGMG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  358  SRTMPGCNTEEQNLLVTRARRLMAAYADMEEMIRLGAYRRGSDSMVDEAIHFQPALENFL  417
            SR  P   ++E+  L +  RR +A Y ++E +IR+G Y+RG D+  D AI+  P +  FL
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  418  RQGKDE  423
            RQ+KDE
Sbjct  411  RQSKDE  416

1015) Sbal_3976 in NC_009052


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (965),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 179/381 (47%), Positives = 272/381 (72%), Gaps = 3/381 (0%)

Query  59   AEVVGFHRDVLCLMPIEPTQGLMPGARVLPITDEQTIAIgdgllgrvldglgQPLDSLGD  118
            AEVVG++     L P+ +T GL  G +V+++   + +++G++LLGRV+DG+G+PLD+  +
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RE  113

Query  119  LTDISQVPQSHTSYNPLLRQPIRQPLDVGIRAINSLLPIGRGQRLGLFAGSGVGKSVLLG  178
            L ++        +  +++RQPI QPL  GIRAI+S+   G GQR+G+F+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  179  MMTRFTEADVVVVGLIGERGREVREFIEETLGEEGRKRAVIIAAPADTTPLMRLRAMRLS  238
            M+    +AD  V+ LIGERGREVREFI+ TL+EE RKR VI+ A +D  +L R+RA+ ++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  239  HSIACAFRDQGKQVLLLVDSLTRYAQAQREIALSLGEPPATKGYPPSAFAQLPRLVEMAG  298
             +IA  FRD+GK+V+LL DSLTRYA+A REIAL+ GE + +  YPP+ F+ LPRL+E +G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  299  NGEHPTGTLTAFYTVLAEGDDQQDPVADAARAILDGHIVLSRKLAEQGHFPAIDINASVS  358
             GE   G++TAFYTVL EGDD ++P+AD  R++LDGHIVLSR+LAE+GH+PAID+ A++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  359  RLAMHIATSSSIEQSQIFRHLLSRYNEVRDLLPLGGYQAGQDPEMDLAVRVYPEMARFLR  418
            R+   +++    + + I+R+ L+ Y+EV  L+ +G YQ G D + D A+  YP++  FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  419  QTTHSKVNLAESLAQLEQLMG  439
            Q+ +        + +L+Q++ 
Sbjct  412  QSKDEVCGPELLIEKLHQILT  432

1016) hrcN in NC_013971


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (964),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 205/413 (50%), Positives = 289/413 (70%), Gaps = 13/413 (3%)

Query  23   RYAPV---SRYGRVTGISGILIECILPGARIGDLCRIQRSDGGSVLSEIVGFSPEKILLS  79
            +Y+P     R GR+ ++S+ L++  LPG  +G+LC I+ ++    L+E+VG++  K LLS
Sbjct  12   KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLS  68

Query  80   ALGALDGISQGATIVPLYLPHSICVSEQLLGSVLDGFGRALEPGGHSAFAEPGTQVRAVP  139
            ++ +  G+  G  +++L   H + V+E LLG V+DGFGR+L+    +     + +  + P
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPP  128

Query  140  VLNDApppterprittplptGLRAIDGLLTIGNGQRVGIFAGAGCGKTTLLAELARNTPC  199
             +        R  IT PL TG+RAID++ T G+GQRVGIF+++G GK+TLLA L      
Sbjct  129  AM-------VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA  181

Query  200  DAIVFGLIGERGRELREFLDHELDDELRSRTVLLCATSDRSSMeraraaftataiaeafr  259
            D+ V+ LIGERGRE+REF+D  L +E R R V++ ATSDR+++ER RA F AT+IAE FR
Sbjct  182  DSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFR  241

Query  260  aeGKSVLLIVDSLTRFARAQREIglalgeppgrgglppSVYTLLPRLVERAGQTQQGAIT  319
             +GK V+L+ DSLTR+ARA REI+LA GE +  G  PP+V++ LPRL+ER+G  ++G+IT
Sbjct  242  DNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSIT  301

Query  320  ALYSVLIEQDSMNDPVADEVRSLIDGHIVLSRRLAERNHYPAIDVLASLSRTMSNVVEPG  379
            A+Y+VL+E D MN+P+ADEVRSL+DGHIVLSRRLAER HYPAIDVLA+LSR  + V    
Sbjct  302  AFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHE  361

Query  380  HMMQAGRLRSLMAAYQQVEMLIRLGEYQPGNDSLTDAAVNANDIINRFLRQSM  432
            H   A+ LR  +A YQ+VE+LIR+GEYQ G D+ TD A+++   I  FLRQS 
Sbjct  362  HRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

1017) fliI in NC_018868


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (964),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 176/367 (48%), Positives = 256/367 (70%), Gaps = 3/367 (0%)

Query  60   AQVVGFNESRVFLMPMGPAQGLKVGLPVKPLAHAQGIPVGPGLLGRVIDANGKPLDNRGP  119
            A+VVG+N S+ +L P  ++ GL  G  V +L + + +PVG +LLGRVID+ G+PLD R  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  120  LTQIAFAEPDGRVINPLDRHPISEPLDVGIRAINGLLTVGKGQRIGLFAGSGVGKSVLLG  179
            L ++   + D+    ++ R+PI++PL  GIRAI+++ T G GQR+G+F+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  180  MMTRFTKADvvvvglvgergrevKEFVDHILGEAGLRRavvvaspaddvpLLRLNASHLA  239
            M+     AD  V+ L+GERGREV+EF+D  L+E   +R V+V + +D  +L R+ A  +A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  240  TGIAEYFRDQGKDVLLLMDSLTRYAQAQREIALSIGEPPATRGYPPSVFAKLPQLVERAG  299
            T IAE+FRD+GK V+LL DSLTRYA+A REIAL+ GE + +  YPP+VF+ LP+L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  300  NGRAGGGSITAFYTVLTEGDDLQDPIADASRAILDGHVVLNRRLADEGVYPAIDVEASVS  359
             G    GSITAFYTVL EGDD+++P+AD  R++LDGH+VL+RRLA+ G YPAIDV A++S
Sbjct  294  MG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  360  RVMPSVVSESQLAMAQTFKGLMANYRQNRDLISMGAYQAGADPALDEAIQKQPALKRYVS  419
            RV P V S+ +  +A  ++  +A Y++   LI +G YQ G D   D AI+  P +  ++ 
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  420  QRMSEAV  426
            Q   E  
Sbjct  412  QSKDEVC  418

1018) Ser39006_3167 in NC_022268


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (964),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 173/369 (47%), Positives = 250/369 (68%), Gaps = 9/369 (2%)

Query  67   SEVVGFNGQKLFLMPLEEVEGIIPGARVYERMGPEGKTQGKQLPLGPELLGRVLDGSAKP  126
            +EVVG+NG K +L P+    G+  G +V   M+   +    Q+P+G  LLGRV+DG ++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV---MALRRR---HQVPVGEALLGRVIDGFGRP  108

Query  127  LDGLPAPDTGYRAALITPPVNPLQRTPIEDVLDVGVRAINALLTVGRGQRMGLFAGSGVG  186
            LDG   P+   +     PP  ++ R PI + L  G+RAI+++ T G GQR+G+F+++GVG
Sbjct  109  LDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  187  KSVLLGMMARYTQADIIVVGLIGERGREVKDFIENILGPEGRARSVVIAAPADVSPLLRM  246
            KS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  247  QGAAYATRIAEDFRDHGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPA  306
            ++   AT IAE FRD+G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  307  LVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRQLAEAGHYPAID  366
            L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR+LAE GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  367  IEASISRAMTSLIDEEHYGSVRQFKQLLSSYQRNRDLVSVGAYAAGSDLTLDRAIRLYPQ  426
            + A++SR    +  +EH      +++ L+ YQ    L+ +G Y  G D   D+AI  YP+
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  427  MEAFLQQGM  435
            + +FL+Q+ 
Sbjct  406  ICTFLRQSK  414

1019) fliI in NC_007974


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (965),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 182/399 (46%), Positives = 262/399 (66%), Gaps = 24/399 (6%)

Query  84   AEVVGFGADRLYLMPQSDVAGLVPGARVYPLEPSPLPNGIIGAGAPREQGSKRLPVGDGL  143
            AEVVG+ + +  L P +  AGL  G +V +L                 +   ++PVG++L
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMAL-----------------RRRHQVPVGEAL  97

Query  144  LGRVLDAAGRPLDGLGPITAASEVPLAGTQINPLTRAPIETVLDTGVRAINGMLTVGRGQ  203
            LGRV+D+ GRPLDG   +         +    ++ R PI   L TG+RAI+++ T G GQ
Sbjct  98   LGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  204  RMGLFAGSGVGKSVLLGMMARYTNADVIVVGLIGERGREVKEFIENILGEEGRKRSVVVA  263
            R+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+EE RKR V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  264  APADTSPLLRMQGAAYATRLAEYFRDKGQHVLLIMDSLTRYAMAQREIALAIGEPPATKG  323
            A +D ++L R+++   AT +AE+FRD+G++V+L+ DSLTRYA A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  324  YPPSVFAKLPTLVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRS  383
            YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  384  LAEAGHYPAIDVEASISRAMTALI--DAPQFASVRRFKQLMSRYQRNRDLISVGAYVPGS  441
            LAE GHYPAIDV A++SR    +   +  Q+A++  +++ ++ YQ    LI +G Y  G 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI--LRRRLALYQEVELLIRIGEYQRGV  392

Query  442  DPELDLAIRMYPRMEAFLQQDIHERAGYDASIAQLHDLF  480
            D + D AI  YP + +FL+Q  +E  G +  I +LH+++
Sbjct  393  DTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1020) Dd586_1535 in NC_013592


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (965),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 189/424 (45%), Positives = 276/424 (66%), Gaps = 31/424 (7%)

Query  27   RYGRLTRATGLVLEA--TGLHMPLGSTCLIERQTGNQVDEVESEVVGFNGQKMFLMPLEE  84
            R GR+   ++ +L+A   G+ M  G  C I  + G+++    +EVVG+NG K +L P+  
Sbjct  21   RWGRIQDVSATLLNAWLPGVFM--GELCCI--KPGEEL----AEVVGINGSKALLSPFTS  72

Query  85   VEGIIPGARVYERVGLSGSSQGKQLPLGPALLGRVLDGSAKPLDGLPTPD---TGYSAPL  141
              G+  G +V   ++L    +  Q+P+G ALLGRV+DG ++PLDG   P+    +Y A  
Sbjct  73   TAGLHCGQQV---MALR---RRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDA--  124

Query  142  MTAPFNPLQRTPIEHVLDVGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQAD  201
            M +P  ++ R PI + L  G+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD
Sbjct  125  MPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD  182

Query  202  VIVVGLIGERGREVKDFIENILGTEGLARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD  261
              V+ LIGERGREV++FI+  L+ E   R V++ A +D ++L R+++   AT IAE FRD
Sbjct  183  SNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRD  242

Query  262  RGHHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSI  321
             G +V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSI
Sbjct  243  NGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSI  300

Query  322  TAFYTVLTEGDDQQDPIADSARAILDGHIVLSRQLAESGHYPAIDIEASISRAMTALIDE  381
            TAFYTVL EGDD ++P+AD  R++LDGHIVLSR+LAE GHYPAID+ A++SR    +  +
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  382  NHYSAVRQFKQSLSSYQRNRDLINVGAYAAGSDPMLDRAIQLYPQMQHFLQQGMFERSSF  441
            +H      +++ L+ YQ    LI +G Y  G D   D+AI+ YP++  FL+Q+       
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK------  414

Query  442  DEAC  445
            DE C
Sbjct  415  DEVC  418

1021) fliI in NC_017646


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (964),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 270/409 (67%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPFPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG  +P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLESYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++ ++L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1022) hrcN in NC_013961


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (963),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 205/413 (50%), Positives = 289/413 (70%), Gaps = 13/413 (3%)

Query  21   RYAPV---SRYGRVTGISGILIECILPGARIGDLCRIQRSDGGSVLSEIVGFSPEKILLS  77
            +Y+P     R GR+ ++S+ L++  LPG  +G+LC I+ ++    L+E+VG++  K LLS
Sbjct  12   KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLS  68

Query  78   ALGALDGISQGATIVPLYLPHSICVSEQLLGSVLDGFGRALEPGGHSAFAEPGTQVRAVP  137
            ++ +  G+  G  +++L   H + V+E LLG V+DGFGR+L+    +     + +  + P
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPP  128

Query  138  VLNDApppterprittplptGLRAIDGLLTIGNGQRVGIFAGAGCGKTTLLAELARNTPC  197
             +        R  IT PL TG+RAID++ T G+GQRVGIF+++G GK+TLLA L      
Sbjct  129  AM-------VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA  181

Query  198  DAIVFGLIGERGRELREFLDHELDDELRSRTVLLCATSDRSSMeraraaftataiaeafr  257
            D+ V+ LIGERGRE+REF+D  L +E R R V++ ATSDR+++ER RA F AT+IAE FR
Sbjct  182  DSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFR  241

Query  258  aeGKSVLLIVDSLTRFARAQREIglalgeppgrgglppSVYTLLPRLVERAGQTQQGAIT  317
             +GK V+L+ DSLTR+ARA REI+LA GE +  G  PP+V++ LPRL+ER+G  ++G+IT
Sbjct  242  DNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSIT  301

Query  318  ALYSVLIEQDSMNDPVADEVRSLIDGHIVLSRRLAERNHYPAIDVLASLSRTMSNVVEPG  377
            A+Y+VL+E D MN+P+ADEVRSL+DGHIVLSRRLAER HYPAIDVLA+LSR  + V    
Sbjct  302  AFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHE  361

Query  378  HMMQAGRLRSLMAAYQQVEMLIRLGEYQPGNDSLTDAAVNANDIINRFLRQSM  430
            H   A+ LR  +A YQ+VE+LIR+GEYQ G D+ TD A+++   I  FLRQS 
Sbjct  362  HRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

1023) fliI1 in NC_017644


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (963),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 267/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSKTHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I      K  E  +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI------KPGEELAEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1024) fliI in NC_017445


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (963),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 188/449 (42%), Positives = 283/449 (64%), Gaps = 25/449 (5%)

Query  10   DTIERTEAKMGAIPAFRRYGRLTRATGLVMEAVGLKLP---IGAICVVERQTRDGIMPVE  66
            + ++R   K  +  ++ R GR+   ++ +++A    LP   +G +C         I P E
Sbjct  4    ELMQRLRLKYPPPDGYCRWGRIQDVSATLLNA---WLPGVFMGELCC--------IKPGE  52

Query  67   --SEVVGFKDQLLYLMPLEHVDGVLPGARVYAPDGDNDEGKQLPVGPQLLGRVLDAQGRP  124
              +EVVG+++    L P+    G+  G +V A    +    Q+PVG  LLGRV+D+ GRP
Sbjct  53   ELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRH----QVPVGEALLGRVIDGFGRP  108

Query  125  LDGRPAPLKTRCASLF-TQPINPLHRDPIKSVLDVGVRAINGLLTVGRGQRMGLFAGSGV  183
            LDGR   L   C   + + P  ++ R+PI   L  G+RAI+++ T G GQR+G+F+++GV
Sbjct  109  LDGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGV  166

Query  184  GKSVLLGMMARFTDADVIVVGLIGERGREVKDFIENILGAEGIERAVVIAAPADVSPVLR  243
            GKS LL+M+    DAD  V+ LIGERGREV++FI+  L+ E   R V++ A +D +++ R
Sbjct  167  GKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALER  226

Query  244  MQGAVYATRLAEDFRDRGMNVLLIMDSLTRFAMAQREVALAIGEPPATKGYPPSVFARLP  303
            +++   AT +AE FRD G  V+L+ DSLTR+A A RE+ALA GE + +  YPP+VF+ LP
Sbjct  227  VRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALP  286

Query  304  ALVERAGNGVAGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAESGHYPAI  363
             L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAI
Sbjct  287  RLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI  344

Query  364  DIEASISRAMTELIPHAQYRKVQSFKQQLSSYQRNSDLVSVGAYVSGSDALLDRAIARYP  423
            D+ A++SR    + +H + +    ++++L+ YQ    L+ +G Y  G D+  D+AI  YP
Sbjct  345  DVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  424  QMESFLQQSIHESCGYAEAVSALSTLLPD  452
            ++ +FL+QS +E CG    +  L  +L +
Sbjct  405  DICTFLRQSKDEVCGPELLIEKLHQILTE  433

1025) fliI in NC_017390


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (964),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 188/449 (42%), Positives = 283/449 (64%), Gaps = 25/449 (5%)

Query  10   DTIERTEAKMGAIPAFRRYGRLTRATGLVMEAVGLKLP---IGAICVVERHTRDGIMPVE  66
            + ++R   K  +  ++ R GR+   ++ +++A    LP   +G +C         I P E
Sbjct  4    ELMQRLRLKYPPPDGYCRWGRIQDVSATLLNA---WLPGVFMGELCC--------IKPGE  52

Query  67   --SEVVGFKDQLLYLMPLEHVDGVLPGARVYAPDGDNDEGKQLPVGPQLLGRVLDAQGRP  124
              +EVVG+++    L P+    G+  G +V A    +    Q+PVG  LLGRV+D+ GRP
Sbjct  53   ELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRH----QVPVGEALLGRVIDGFGRP  108

Query  125  LDGRPAPLKTRCASLF-TQPINPLHRDPIKSVLDVGVRAINGLLTVGRGQRMGLFAGSGV  183
            LDGR   L   C   + + P  ++ R+PI   L  G+RAI+++ T G GQR+G+F+++GV
Sbjct  109  LDGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGV  166

Query  184  GKSVLLGMMARFTDADVIVVGLIGERGREVKDFIENILGAEGIERAVVIAAPADVSPVLR  243
            GKS LL+M+    DAD  V+ LIGERGREV++FI+  L+ E   R V++ A +D +++ R
Sbjct  167  GKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALER  226

Query  244  MQGAVYATRLAEDFRDRGMNVLLIMDSLTRFAMAQREVALAIGEPPATKGYPPSVFARLP  303
            +++   AT +AE FRD G  V+L+ DSLTR+A A RE+ALA GE + +  YPP+VF+ LP
Sbjct  227  VRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALP  286

Query  304  ALVERAGNGVAGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAESGHYPAI  363
             L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAI
Sbjct  287  RLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI  344

Query  364  DIEASISRAMTELIPHAQYRKVQSFKQQLSSYQRNSDLVSVGAYVSGSDALLDRAIARYP  423
            D+ A++SR    + +H + +    ++++L+ YQ    L+ +G Y  G D+  D+AI  YP
Sbjct  345  DVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  424  QMESFLHQSIHESCGYAEAVSALSTLLPD  452
            ++ +FL+QS +E CG    +  L  +L +
Sbjct  405  DICTFLRQSKDEVCGPELLIEKLHQILTE  433

1026) fliI in NC_012214


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (964),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 188/449 (42%), Positives = 283/449 (64%), Gaps = 25/449 (5%)

Query  10   DTIERTEAKMGAIPAFRRYGRLTRATGLVMEAVGLKLP---IGAICVVERHTRDGIMPVE  66
            + ++R   K  +  ++ R GR+   ++ +++A    LP   +G +C         I P E
Sbjct  4    ELMQRLRLKYPPPDGYCRWGRIQDVSATLLNA---WLPGVFMGELCC--------IKPGE  52

Query  67   --SEVVGFKDQLLYLMPLEHVDGVLPGARVYAPDGDNDEGKQLPVGPQLLGRVLDAQGRP  124
              +EVVG+++    L P+    G+  G +V A    +    Q+PVG  LLGRV+D+ GRP
Sbjct  53   ELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRH----QVPVGEALLGRVIDGFGRP  108

Query  125  LDGRPAPLKTRCASLF-TQPINPLHRDPIKSVLDVGVRAINGLLTVGRGQRMGLFAGSGV  183
            LDGR   L   C   + + P  ++ R+PI   L  G+RAI+++ T G GQR+G+F+++GV
Sbjct  109  LDGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGV  166

Query  184  GKSVLLGMMARFTDADVIVVGLIGERGREVKDFIENILGAEGIERAVVIAAPADVSPVLR  243
            GKS LL+M+    DAD  V+ LIGERGREV++FI+  L+ E   R V++ A +D +++ R
Sbjct  167  GKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALER  226

Query  244  MQGAVYATRLAEDFRDRGMNVLLIMDSLTRFAMAQREVALAIGEPPATKGYPPSVFARLP  303
            +++   AT +AE FRD G  V+L+ DSLTR+A A RE+ALA GE + +  YPP+VF+ LP
Sbjct  227  VRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALP  286

Query  304  ALVERAGNGVAGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAESGHYPAI  363
             L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAI
Sbjct  287  RLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI  344

Query  364  DIEASISRAMTELIPHAQYRKVQSFKQQLSSYQRNSDLVSVGAYVSGSDALLDRAIARYP  423
            D+ A++SR    + +H + +    ++++L+ YQ    L+ +G Y  G D+  D+AI  YP
Sbjct  345  DVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  424  QMESFLHQSIHESCGYAEAVSALSTLLPD  452
            ++ +FL+QS +E CG    +  L  +L +
Sbjct  405  DICTFLRQSKDEVCGPELLIEKLHQILTE  433

1027) Saut_2145 in NC_014506


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  258 bits (963),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 171/408 (42%), Positives = 280/408 (69%), Gaps = 12/408 (2%)

Query  11   ANKNYSVSFGEVVKINATIITAKGLHVSISDMVKIVSDTTGQETVGMVTEIDADLFFITP  70
            +   Y    G +  ++AT++ A    V ++++  I     G+E ++ V  I++   +++P
Sbjct  15   PPDGYC-RWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEE-LAEVVGINGSKALLSP  69

Query  71   FSFVEGFRSGDKVFLDATGLNIPVGPALLGRVVDPFMRPIDGKGSVKDaklapiikapia  130
            F+   G++ G++V       ++PVG ALLGRV+D F RP+DG+  + +         P +
Sbjct  70   FTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPP  128

Query  131  aMKRGMIDEVFSVGVKSIDGLLSCGKGQKLGIFAGSGVGKSTLMGMIVRGADAPIKVVAL  190
            AM R  I + +  G+++ID++ +CG GQ++GIF+++GVGKSTL++M+  ++DA  +V+ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  191  IGERGREVPEFIEKNLGGDLTN-TVIVVATSDDSPLMRKYGAFAAMSVAEYFKDQGRDVL  249
            IGERGREV EFI+  L+ +  +  VIVVATSD ++L R  + F A ++AE+F+D+G+ V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  250  FIMDSVTRFAMAQREIGLALGEPPTSKGYPPSSLTLLPQLMERAGKEEGKGSITAFFTVL  309
            ++ DS+TR+A A REI+LA GE + S  YPP+ ++ LP+L+ER+G  E KGSITAF+TVL
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGSITAFYTVL  307

Query  310  IEGDDMSDPIADQSRSILDGHIVLSREMTDFGIYPPVHILNSASRVMSDIITPQH--LKA  367
            +EGDDM++P+AD+ RS+LDGHIVLSR +++ G YP++++L + SRV + + + +H  L A
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  368  VMKFRRLYTLLKENETLIRIGAYTQGSDAELDEAINKKEDMEAFITQN  415
            +++ RRL +L +E E LIRIG Y +G D++ D AI+   D+ +F+ Q+
Sbjct  368  ILR-RRL-ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1028) Fbal_1038 in NC_014541


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (960),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 187/378 (50%), Positives = 264/378 (70%), Gaps = 5/378 (1%)

Query  47   VGSLCQIETLNGQLTAEVVGFDDQVLYLMPVEELKGVLPGARVTPMGQRQGLPVGPELLG  106
            +G LC I    G+  AEVVG+++    L P     G+  G +V ++ +R+ +PVG  LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGNGEPLDGLGPLATRERAPHHATLLNPMARRPIHQPIDVGVRTINAMLTVGEGQRM  166
            RV+DG G PLDG   L+   +   +A    +M R+PI QP+  G+R+I+++ T GEGQR+
Sbjct  100  RVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  167  GLFAGSGVGKSVLLGMMTRGTNADvivvglvgergrevkeFIEEILGPEGRARSVVVAAP  226
            G+F+++GVGKS LL+M+  + +AD  V+ L+GERGREV+EFI+  L+ E R R V+V A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  227  ADTSPLMRLRACETATRIAEHFRDQGRNVLLLMDSLTRYAQAQREIALAIGEPPATKGYP  286
            +D ++L R+RA   AT IAE FRD+G+ V+LL DSLTRYA+A REIALA GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  287  PSVFARLPQLVERAGNGGVGQGSITAFYTVLTEGDDQQDPIADAARAILDGHIVLSRALA  346
            P+VF+ LP+L+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR LA
Sbjct  279  PGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  347  ESGHYPAIDIEASISRVMPMVTEPLHLEAAQLIKQLWSAYRQNQDLIAIGAYSAGSDPQV  406
            E GHYPAID+ A++SRV P+VT   H + A ++++  + Y++ + LI IG Y  G D + 
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  407  DKAIAMQPAFNAFLRQAM  424
            DKAI   P + +FLRQ+ 
Sbjct  397  DKAIDTYPDICTFLRQSK  414

1029) fliI in NC_009138


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (959),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 165/336 (50%), Positives = 227/336 (68%), Gaps = 3/336 (0%)

Query  78   RTRHLPVGMELLGRVLDGAGRPLDSLGPLHATHSGPLNVRAANPLTRAPITDVLDVGVRA  137
            R +++PVG  LLGRV+DG GRPLD+   L        +  ++ ++ R PIT+ L  G+RA
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRA  145

Query  138  INSMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTTADVIVVGLIGERGREVKEFIEQILG  197
            I+S+ T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+
Sbjct  146  IDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLS  205

Query  198  PEGLARSVVVAAPADTPPLMRLQGAAYTTAIAEHFRDEGKDVLLIMDSLTRYAMAQREIA  257
             E   R V+V A +D P+L R+++   +T+IAE FRD+GK V+L+ DSLTRYA A REIA
Sbjct  206  EETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIA  265

Query  258  LAIGEPPATKGYPPSVFAKLPALVERAGNGKEGGGSITAFYTVLTEGDDQQDPIADAARA  317
            LA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R+
Sbjct  266  LAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRS  323

Query  318  ILDGHIVLNRSLAEAGHYPAIDIEQSISRAMHNITTPEHQKQTRKLKQLTSRYQRNRDLI  377
            +LDGHIVL+R LAE GHYPAID+  ++SR    +T+ EH++ +  L++  + YQ    LI
Sbjct  324  LLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLI  383

Query  378  SVGAYSAGSDPVLDEAIALNTKIESFLQQDITERSG  413
             +G Y  G D   D AI     I +FL+Q   E  G
Sbjct  384  RIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

1030) Sput200_2738 in NC_017566


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (961),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 185/382 (49%), Positives = 266/382 (70%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMAGDLVAEVVGFDDELLYLMPIEELRGVLPGARVIPLGEQTGLKVGLSLLG  106
            +G LC I   +G+ +AEVVG+++    L P+    G+  G +V++L  +  + VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGNGVPLDG--LGALQTDQYAPRHNSAINPLSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG  L  +   +Y +   +A   + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGEKGRARSVVIA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+E  R R V++ 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRA  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSLYQQNRDLISIGAYAQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1031) fliI in NC_009438


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (961),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 185/382 (49%), Positives = 266/382 (70%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMAGDLVAEVVGFDDELLYLMPIEELRGVLPGARVIPLGEQTGLKVGLSLLG  106
            +G LC I   +G+ +AEVVG+++    L P+    G+  G +V++L  +  + VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGNGVPLDG--LGALQTDQYAPRHNSAINPLSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG  L  +   +Y +   +A   + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGEKGRARSVVIA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+E  R R V++ 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRA  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSLYQQNRDLISIGAYAQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1032) fliI in NC_008750


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (960),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 185/382 (49%), Positives = 266/382 (70%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMAGDLVAEVVGFDDELLYLMPIEELRGVLPGARVIPLGEQTGLKVGLSLLG  106
            +G LC I   +G+ +AEVVG+++    L P+    G+  G +V++L  +  + VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGNGVPLDG--LGALQTDQYAPRHNSAINPLSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG  L  +   +Y +   +A   + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGEKGRARSVVIA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+E  R R V++ 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRA  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSLYQQNRDLISIGAYAQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1033) fliI in NC_003910


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (961),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 276/387 (72%), Gaps = 5/387 (1%)

Query  57   GDLLAEVVGFAQDITYLMPEESLRGVMPGARVLPISSKAKVPLSMGLLGRVINGVGKPLD  116
            G+ LAEVVG+    + L P  S  G+  G +V+++  + +VP++ +LLGRVI+G G+PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  117  SKG-PIKADNDYHHDSKPINPLSRRAITEVLDVGVRSINSFISVGKGQRMGLFAGSGVGK  175
            ++  P    +DY  D+ P  ++ R++IT+ L  G+R+I+S  + G GQR+G+F+++GVGK
Sbjct  111  GRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGK  168

Query  176  SVLMGMMTRGTTADvvvvglvgergrevkefieeilgeeglkRAVVVAAPADNSPLMRLK  235
            S L++M+  +  AD  V+ L+GERGREV+EFI+  L+EE  KR V+V A +D ++L R++
Sbjct  169  STLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR  228

Query  236  GCETAVQISEYFRDQGLNVLLLLDSLTRYAQAQREIALAVGEPPATKGYPPSVFSKLPQL  295
            +   A  I+E+FRD+G  V+LL DSLTRYA+A REIALA GE + +  YPP+VFS LP+L
Sbjct  229  ALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRL  288

Query  296  VERAGNGGEGQGSITAFYTVLTEGDDLQDPVADAARAILDGHVVLSRELADAGHYPAVNI  355
            +ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR LA+ GHYPA+++
Sbjct  289  LERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDV  346

Query  356  EGSISRVMPMVTSADHQELAKQLKQMYALYQQNKDLIAIGAYTKGNDPRIDQAINVLPVI  415
             +++SRV P+VTS +H++LA  L++  ALYQ+   LI IG Y +G D   D+AI+  P I
Sbjct  347  LATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDI  406

Query  416  NFFLQQKINEVIPYDQSIAQLKEIIAA  442
              FL+Q  +EV   +  I +L +I++ 
Sbjct  407  CTFLRQSKDEVCGPELLIEKLHQILTE  433

1034) fliI in NC_014121


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (959),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 174/371 (47%), Positives = 253/371 (69%), Gaps = 14/371 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYAKNIIGDGLQSGKQLPLGPALLGRVLDGSGK  126
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  127  PLDGLPAPDTT--ETGALITQPFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGS  184
            PLDG   P+    + +A+   P  ++ R PI + L TG+R+I+++ T G GQR+G+F+++
Sbjct  108  PLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  185  GVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPL  244
            GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  245  LRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAK  304
             R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  305  LPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYP  364
            LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYP
Sbjct  285  LPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  365  AIDIEASISRAMTALITEKHYARVRNFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAISL  424
            AID+ A++SR    + ++ H      +++ L+ +Q    L+ +G Y +G D   DKAI  
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  425  WPQLEAFLQQG  435
             P++ +FL+Q+
Sbjct  403  YPDICTFLRQS  413

1035) fliI in NC_011740


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (960),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 179/390 (46%), Positives = 257/390 (66%), Gaps = 20/390 (5%)

Query  49   LGATCVIERQEGTETREVESEVVGFNGQRLFLMPLEEVEGVLPGARVYAKNISGDGLQSG  108
            +G  C I   E        +EVVG+NG + +L P+    G+  G +V A       L+  
Sbjct  42   MGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRR  88

Query  109  KQLPLGPALLGRVLDGSGKPLDGLPSPDTT--ETGALITPPFNPLQRTPIEHVLDTGVRP  166
             Q+P+G ALLGRV+DG G+PLDG   P+    + +A+  P+   + R PI + L TG+R+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRA  145

Query  167  INALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG  226
            I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV++FI+  L+
Sbjct  146  IDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLS  205

Query  227  AEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIA  286
             E R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLTRYA A REIA
Sbjct  206  EETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIA  265

Query  287  LAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARA  346
            LA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R+
Sbjct  266  LAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRS  323

Query  347  ILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYARVRTFKQLLSSFQRNRDLV  406
            +LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H      +++ L+ +Q    L+
Sbjct  324  LLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLI  383

Query  407  SVGAYAKGSDPMLDKAIALWPQLEGFLQQG  436
             +G Y +G D   DKAI   P++  FL+Q+
Sbjct  384  RIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1036) Nit79A3_0497 in NC_015731


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (961),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 183/402 (46%), Positives = 265/402 (66%), Gaps = 28/402 (6%)

Query  47   VGSSCTIFLSNGHNVSAEVVGFSGERLFLMPSSDVYGLSPGAKVVPTELIGESPRIGNFQ  106
            +G  C I    G+++ AEVVG++G + +L P +   GL  G +V++              
Sbjct  42   MGELCCI--KPGEEL-AEVVGINGSKALLSPFTSTAGLHCGQQVMAL-------------  85

Query  107  HPRRRAADRAKHVYVGPELLGRVLNGVGEPLDRLGPTHAEQSVPLY-SRPYNPLERIPVS  165
              RRR      +V VG  LLGRV++G G PLD  G   +E     Y + P  ++ R P++
Sbjct  86   --RRR-----HQVPVGEALLGRVIDGFGRPLD--GRELPEVCWKDYDAMPPPAMVRQPIT  136

Query  166  EPLDVGVRAINMLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTTADVIVVGLIGERGREV  225
            +PL  G+RAI+ + T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  226  KEFIENILGQEGLARSVVVAAPADTSPLLRLQGAAYATAIAEYFRDTGKHVLLIMDSLTR  285
            +EFI+  L++E   R V+V A +D ++L R+++   AT+IAE+FRD GK+V+L+ DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  286  YAMAQREISLAIGEPPATKGYPPSVFAKLPQLVERAGNGNQNSGSITAFYTVLTEGDDQN  345
            YA A REI+LA GE + +  YPP+VF+ LP+L+ER+G G++  GSITAFYTVL EGDD N
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMN  314

Query  346  DPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRVMTSVVPQKQVDMARKFKSLCS  405
            +P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SRV   V ++ + ++A  ++   +
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  406  RYQRSHDLISVGAYVAGTDPELDRAIRLYPAFEKFLQQTMSQ  447
             YQ  + LI +G Y  G D + D+AI  YP +  FL+Q+  +
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1037) fliI in NC_008563


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (960),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLESYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++ ++L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1038) fliI in NC_017628


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (960),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLESYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++ ++L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1039) fliI in NC_013364


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (959),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1040) fliI in NC_022370


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (960),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLESYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++ ++L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1041) fliI in NC_011742


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (960),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLESYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++ ++L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1042) fliI in NC_017632


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (960),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLESYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++ ++L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1043) fliI in NC_007946


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (960),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLESYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++ ++L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1044) SG0565 in NC_007712


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (959),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 175/402 (44%), Positives = 280/402 (70%), Gaps = 14/402 (3%)

Query  19   IQGNIIEASLPAAAIGEVCEVLSSINDTSLAGYARVIGFNGSRTMLSLLCDSAGFSQHHL  78
            + + +++A LP+  +GE+C + ++         A V+G+NGS+++LS +  +AG+   + 
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  79   LVPTGKPFQFPLGEALLGAVLDPLGNICARLDGATETALIATEHRPIDVEALHFSEREPI  138
            +++  +  Q P+GEALLG V+D +G     LDG     +   +  ++   A+    R+PI
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGR---PLDGRELPEVCWKDYDAMPPPAM---VRQPI  135

Query  139  AEKLITRIRAIDGLLTCGHGQRLGIFAAAGCGKTSLMNMLIEHSEADVYVVGLIGERGRE  198
            ++ L+T IRAID++ TCG+GQR+GIF+A+G GK++L+ ML + ++AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  199  VTEFIE-ELKHSSRSGKVVLVNSTSDRSSVERCNAAQVATTVAEYFRDQGKNVLLFIDSI  257
            V EFI+  L + +R  + V+V +TSDR+++ER  A  VATT+AE+FRD+GK V+L+ DS+
Sbjct  196  VREFIDFTLSEETRK-RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  258  TRYARALRDMALSMGELPARRGYPASVFERLPKLLERPGSSQLGSITAFYTVLLENEEEP  317
            TRYARA R++AL+ GE +    YP++VF  LP+LLER G ++ GSITAFYTVL+E ++  
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMN  314

Query  318  DAIGDEVRSILDGHIYLSHTLAAQGHYPAIDILRSTSRLFLQITDKQQQRAAVRFRDLLV  377
            ++++DEVRS+LDGHI LS+ LA +GHYPAID+L + SR+F  +T  ++++ A  +R  L 
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  378  RQRDMQLYLDLGEYRRGENQENDNAFDKENIMSDFLRQPLDE  419
              ++++L + +GEY+RG + + D+A+D    +  FLRQ+ DE
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1045) Arnit_2476 in NC_014166


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (960),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 176/419 (43%), Positives = 287/419 (69%), Gaps = 11/419 (2%)

Query  20   FGRITHISSTTIKAVGIEVAVGDIVKIESQHHLYTVLGMIASVESDGFKIVPFSFIEGFR  79
             GRI ++S+T ++A    V +G++  I + ++L  V+G    +++    + PF+   G++
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVG----INGSKALLSPFTSTAGLH  77

Query  80   INDKVFLQKDGLTVKSGYGLLGRVVNALGEPIDKKGKVKDLEQNS--AINKLSIPALERG  137
              ++V   +    V  G +LLGRV++++G P+D +    +L +      + ++ PA+ R 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR----ELPEVCWKDYDAMPPPAMVRQ  133

Query  138  IIDERFSTGVKAIDSMLTSGKGQKVGIFAGSGVGKSTLMGMIVKGCEAQIKVVALIGERG  197
             I + + TG++AIDS+ T G GQ+VGIF+++GVGKSTL++M+ ++ +A+ +V+ LIGERG
Sbjct  134  PITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG  193

Query  198  REIPEFIHYn-lnnnlentiiiaatSDESALMRKYGAFTAMAIAEFFRDKGHDVLLMMDS  256
            RE+ EFI++   ++     +I+ ATSD +AL R  + F A +IAEFFRD+G  V+L+ DS
Sbjct  194  REVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS  253

Query  257  VTRFAMAQREIGLSIGEPPVSRGYPPSVFALLPQLMERAGNTELGSITAFFTVLVDGDDM  316
            +TR+A A REI+L+ GE +VS  YPP+VF+ LP+L+ER+G  E GSITAF+TVLV+GDDM
Sbjct  254  LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDM  313

Query  317  NDPIADQSRSILDGHIVLTRELTEQGQYPPIDLLRSASRVMDKVVSPEHYNGFLKLKRVL  376
            N+P+AD+ RS+LDGHIVL+R L+E+G+YP+ID+L + SRV   V S EH +    L+R L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  377  SLIKENEILIRVGAYKQGMDKELDDALAKREKIKTFLFQGTSEKYDFNQIFNQFMEVIK  435
            +L +E E+LIR+G Y++G+D + D A+     I TFL Q+  E  + + +++++ +++ 
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1046) SYO3AOP1_1640 in NC_010730


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (962),  Expect = 7e-70, Method: Compositional matrix adjust.
 Identities = 176/432 (41%), Positives = 284/432 (66%), Gaps = 11/432 (2%)

Query  3    LKERLK-NYPK---YKAIGKVKKVIGNTIEAIIPKVSIGDKCIIDKSIE-SEVIGFKDGT  57
            L +RL+ +YP    Y   G+++ V +  ++A +P V +G+ C I  + E +EV+G++++ 
Sbjct  5    LMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSK  64

Query  58   VLLMSYENLDGIKINSPVEVCYTKPSVLVGLDLLGTIVDPFGRPLNKEKINYSNSYYLKL  117
             LL ++ +  G+     V     +  V VG  LLG ++D FGRPL+   +  ++      
Sbjct  65   ALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL--PEVCWKDY  122

Query  118  ETINP--LERERVTEVLDLGVRAVNALFTIGKGQRMGILSGAGVGKSTLLGMISRFTESD  175
            +++ P  + R+ +T+ L  G+RA++++ T G GQR+GI+S++GVGKSTLL+M+    ++D
Sbjct  123  DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD  182

Query  176  VNVIALIGERGREVREFIEDSLKEEGLKKSVVVVATSDMPPLAKIRAVMTSLAIARYFSN  235
             NV+ LIGERGREVREFI+ +L EE  K+ V+VVATSD P+L ++RA+  + +IA +F +
Sbjct  183  SNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRD  242

Query  236  IGKNVLYLLDSLTRVAMAQREIGLSAGEPPTTKGYTPSVFTLLPRIIEQAGNFKNKGSIT  295
             GK V+ L DSLTR A A REI+L+AGE + +  Y P+VF+ LPR++E++G   +KGSIT
Sbjct  243  NGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSIT  301

Query  296  GIYTVLVEGDEIQNDPIADAAISFLDGHIVLSRQIANKRIYPAIDILKSISRLMPQLVND  355
            ++YTVLVEGD++ N+P+AD   S+LDGHIVLSR++A++  YPAID+L ++SR+ P + ++
Sbjct  302  AFYTVLVEGDDM-NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  356  EIMLYQSKIISLEAKYREMEDMINLGLYKEGSSKEVDLAIKMHPVIEEFIKQDINERIDF  415
            E     + +    A Y+E+E +I +G Y+ G   + D AI   P I  F++Q  +E  + 
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  416  KKSIDDLKNVLN  427
               I+ L ++L 
Sbjct  421  ELLIEKLHQILT  432

1047) fliI in NC_009659


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 167/336 (50%), Positives = 228/336 (68%), Gaps = 3/336 (0%)

Query  100  RGRHLPVGIELLGRVLDGAGRPLDNLGPLNAAHAAPLNVRAANPLSRAPITDVLDVGVRA  159
            R +++PVG  LLGRV+DG GRPLD    L        +  ++ ++ R PIT+ L  G+RA
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRA  145

Query  160  INSMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTTADVIVVGLIGERGREVKEFIEQILG  219
            I+S+ T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+
Sbjct  146  IDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLS  205

Query  220  AEGLARSVVVAAPADTPPLMRLQGAAYATAIAEHFRDEGKDVLLIMDSLTRYAMAQREIA  279
             E   R V+V A +D P+L R+++   AT+IAE FRD+GK V+L+ DSLTRYA A REIA
Sbjct  206  EETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIA  265

Query  280  LAIGEPPATKGYPPSVFAKLPALVERAGNGKEGGGSITAFYTVLTEGDDQQDPIADSARA  339
            LA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R+
Sbjct  266  LAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRS  323

Query  340  ILDGHIVLNRSLAEAGHYPAIDIEQSISRAMHNITTPEHQKQTRKLKQLTSRYQRNRDLI  399
            +LDGHIVL+R LAE GHYPAID+  ++SR    +T+ EH++ +  L++  + YQ    LI
Sbjct  324  LLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLI  383

Query  400  SVGAYSAGSDPVLDEAIALNSKIESFLQQDITERCG  435
             +G Y  G D   D AI   + I +FL+Q   E CG
Sbjct  384  RIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

1048) Entas_2737 in NC_015968


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 177/390 (46%), Positives = 259/390 (67%), Gaps = 20/390 (5%)

Query  48   LGATCVIERQDGIETREVESEVVGFNGQRLFLMPLEEVEGILPGARVYAKNNSGDGLQSG  107
            +G  C I   + +      +EVVG+NG + +L P+    G+  G +V A       L+  
Sbjct  42   MGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRR  88

Query  108  KQLPLGPALLGRVLDGSGKPLDGLPSPDTT--ETGALITQPFNPLQRTPIEHVLDTGVRP  165
             Q+P+G ALLGRV+DG G+PLDG   P+    + +A+   P  ++ R PI + L TG+R+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRA  145

Query  166  INALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILG  225
            I+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+
Sbjct  146  IDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLS  205

Query  226  AEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIA  285
             E R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLTRYA A REIA
Sbjct  206  EETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIA  265

Query  286  LAIGEPPATKGYPPSVFAKLPALVERAGNGITGGGSITAFYTVLTEGDDQQDPIADSARA  345
            LA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R+
Sbjct  266  LAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRS  323

Query  346  ILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITEKHYARVRNFKQLLSSFQRNRDLV  405
            +LDGHIVLSRRLAE GHYPAID+ A++SR    + ++ H      +++ L+ +Q    L+
Sbjct  324  LLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLI  383

Query  406  SVGAYAKGSDPMLDKAIALWPHLEAFLQQG  435
             +G Y +G D   DKAI   P++ +FL+Q+
Sbjct  384  RIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1049) fliI in NC_008253


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPFPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG  +P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1050) fliI in NC_017631


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPFPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG  +P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1051) fliI in NC_004431


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPFPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG  +P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1052) fliI in NC_017652


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  9    RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  68
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  69   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPFPDTTETGALITPP  128
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG  +P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  129  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  188
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  189  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  248
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  249  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  308
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  309  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  368
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  369  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  417
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1053) fliI in NC_017651


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  9    RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  68
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  69   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPFPDTTETGALITPP  128
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG  +P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  129  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  188
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  189  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  248
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  249  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  308
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  309  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  368
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  369  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  417
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1054) fliI in NC_011751


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISTEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPFPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG  +P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1055) fliI in NC_017328


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPFPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG  +P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1056) fliI in NC_004741


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPFPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG  +P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1057) fliI in NC_004337


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 269/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPFPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG  +P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1058) Dd703_1543 in NC_012880


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 189/431 (44%), Positives = 283/431 (66%), Gaps = 23/431 (5%)

Query  27   RYGRLTRATGLVLEATGLHLP---LGATCMIERPHGDLMQEVESEVVGFNGQRLFLMPLE  83
            R GR+   ++ +L+A    LP   +G  C I +P  +L     +EVVG+NG + +L P+ 
Sbjct  21   RWGRIQDVSATLLNA---WLPGVFMGELCCI-KPGEEL-----AEVVGINGSKALLSPFT  71

Query  84   EVDGIVPGARVYA-RIGGDNEGQGKKLPLGMSLLGRILDGAGKPLDGLPLPETGYRASLT  142
               G+  G +V A R       +  ++P+G +LLGR++DG G+PLDG  LPE   +   +
Sbjct  72   STAGLHCGQQVMALR-------RRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDA  124

Query  143  TPPFNPLQRTPIDHVLDVGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADV  202
             PP  ++ R PI + L  G+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD 
Sbjct  125  MPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  203  IVVGLIGERGREVKDFIENILGAEGRSRSVVIAAPADVSPLLRMQGAAYATRIAEDFRDK  262
             V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD+
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  263  GYHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAgngihgggsit  322
            G +V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+  G+   GSIT
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT--GMGEKGSIT  301

Query  323  gFYTVLTEGDDQQDPIADSARAILDGHIVLSRQLAESGHYPAIDIEASISRAMTSLIDES  382
            +FYTVL EGDD ++P+AD  R++LDGHIVLSR+LAE GHYPAID+ A++SR    +  + 
Sbjct  302  AFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHE  361

Query  383  HYAKVRQFKQLLSVYQRNKDLISVGAYAAGSDPLLDKAIKLYPRMESFLQQGMYERCDED  442
            H      +++ L++YQ    LI +G Y  G D   DKAI  YP + +FL+Q+  E C+ +
Sbjct  362  HRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

Query  443  HALQQLGELFT  453
              +++L +++T
Sbjct  422  LLIEKLHQILT  432

1059) fliI in NC_011750


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  257 bits (962),  Expect = 9e-70, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 270/409 (67%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPFPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG  +P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMALREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLESYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++ ++L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1060) fliI in NC_017671


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (956),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 179/362 (50%), Positives = 255/362 (71%), Gaps = 3/362 (0%)

Query  78   AEVVGFAGERTYLMPSAELHGLLPNARVVPSArrggvevgegllgrvIDSDGVPLDGKGP  137
            AEVVG+ G ++ L P +   GL    +V++  RR  V VGE+LLGRVID+ G PLDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  138  IRAEGHVGMAGVSINPLAREPITQPLDVGVRAINALLPIGRGQRVGLFAGSGVGKSTLLG  197
            +      +  +++  ++ R+PITQPL  G+RAI+++   G GQRVG+F+++GVGKSTLL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  198  MMTRYTAADVIVVGLIGERGREVRDFVETTLGEEGLRRAVVVASPADRPPLARLHGAYRA  257
            M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V + +DRP+L R+++ + A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  258  TAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYPPSVFAKLPALVERAG  317
            T+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  YPP+VF+ LP L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  318  NGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVADSGLYPAIDVESSVS  377
             G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+A+ G YPAIDV +++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  378  RVVTEIADEPWRLRIRKLKRLVSAYSANRDLIAIGAYQRGNDAATDEALERWPEIMEFLG  437
            RV   ++ +  R     L+R ++ Y     LI IG YQRG D+ TD A++  P+I  FL 
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  438  QD  439
            Q 
Sbjct  412  QS  413

1061) Sbal175_1433 in NC_017571


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 186/382 (49%), Positives = 266/382 (70%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMAGELIAEVVGFDGELLYLMPIEELRGVLPGARVVPLGEQTGLNVGLSLLG  106
            +G LC I   +GE +AEVVG++G    L P+    G+  G +V++L  +  + VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGNGVPLDGLGALQTDQQAPRHSAAINP--LSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG    +  +   ++  A+ P  + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGR---ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGDKGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L++  R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRS  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSLYQQNRDLISIGAYAQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1062) Sbal117_3062 in NC_017579


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 186/382 (49%), Positives = 266/382 (70%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMAGELIAEVVGFDGELLYLMPIEELRGVLPGARVVPLGEQTGLNVGLSLLG  106
            +G LC I   +GE +AEVVG++G    L P+    G+  G +V++L  +  + VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGNGVPLDGLGALQTDQQAPRHSAAINP--LSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG    +  +   ++  A+ P  + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGR---ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGDKGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L++  R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRS  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSLYQQNRDLISIGAYAQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1063) fliI in NC_009052


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 186/382 (49%), Positives = 266/382 (70%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMAGELIAEVVGFDGELLYLMPIEELRGVLPGARVVPLGEQTGLNVGLSLLG  106
            +G LC I   +GE +AEVVG++G    L P+    G+  G +V++L  +  + VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGNGVPLDGLGALQTDQQAPRHSAAINP--LSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG    +  +   ++  A+ P  + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGR---ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGDKGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L++  R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRS  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSLYQQNRDLISIGAYAQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1064) fliI in NC_009665


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 186/382 (49%), Positives = 266/382 (70%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMAGELIAEVVGFDGELLYLMPIEELRGVLPGARVVPLGEQTGLNVGLSLLG  106
            +G LC I   +GE +AEVVG++G    L P+    G+  G +V++L  +  + VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGNGVPLDGLGALQTDQQAPRHSAAINP--LSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG    +  +   ++  A+ P  + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGR---ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGDKGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L++  R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRS  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSLYQQNRDLISIGAYAQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1065) fliI in NC_009997


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 186/382 (49%), Positives = 266/382 (70%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMAGELIAEVVGFDGELLYLMPIEELRGVLPGARVVPLGEQTGLNVGLSLLG  106
            +G LC I   +GE +AEVVG++G    L P+    G+  G +V++L  +  + VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGNGVPLDGLGALQTDQQAPRHSAAINP--LSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG    +  +   ++  A+ P  + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGR---ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGDKGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L++  R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRS  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSLYQQNRDLISIGAYAQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1066) fliI in NC_011663


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 186/382 (49%), Positives = 266/382 (70%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMAGELIAEVVGFDGELLYLMPIEELRGVLPGARVVPLGEQTGLNVGLSLLG  106
            +G LC I   +GE +AEVVG++G    L P+    G+  G +V++L  +  + VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGNGVPLDGLGALQTDQQAPRHSAAINP--LSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG    +  +   ++  A+ P  + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGR---ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGDKGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L++  R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRS  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSLYQQNRDLISIGAYAQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1067) Sbal678_3076 in NC_016901


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 186/382 (49%), Positives = 266/382 (70%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMAGELIAEVVGFDGELLYLMPIEELRGVLPGARVVPLGEQTGLNVGLSLLG  106
            +G LC I   +GE +AEVVG++G    L P+    G+  G +V++L  +  + VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGNGVPLDGLGALQTDQQAPRHSAAINP--LSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG    +  +   ++  A+ P  + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGR---ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGDKGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L++  R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRS  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSLYQQNRDLISIGAYAQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1068) fliI in NC_009436


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 171/371 (47%), Positives = 253/371 (69%), Gaps = 14/371 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYAKNNSGDGLHSGKQLPLGPALLGRVLDGAGK  126
            +EVVG+NG + +L P+    G+  G +V        +L+   Q+P+G ALLGRV+DG G+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGR  107

Query  127  PLDGLPSPDTT--ETGALITQPVNPLQRTAIEHVLDTGVRPINALLTVGRGQRMGLFAGS  184
            PLDG   P+    + +A+   P  ++ R +I + L TG+R+I+++ T G GQR+G+F+++
Sbjct  108  PLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  185  GVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPL  244
            GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  245  LRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAK  304
             R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  305  LPALVERAGNGITGGGSVTAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYP  364
            LP L+ER+G G    GS+TAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYP
Sbjct  285  LPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  365  AIDIEASISRAMTSLITEKHYARVRNFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIAV  424
            AID+ A++SR    + ++ H      +++ L+ +Q    L+ +G Y +G D   DKAI  
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  425  WPQLEAFLQQG  435
             P++ +FL+Q+
Sbjct  403  YPDICTFLRQS  413

1069) fliI in NC_018079


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 174/371 (47%), Positives = 253/371 (69%), Gaps = 14/371 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYAKNIIGDGLQSGKQLPLGPALLGRVLDGSGK  126
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  127  PLDGLPAPDTT--ETGALITQPFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGS  184
            PLDG   P+    + +A+   P  ++ R PI + L TG+R+I+++ T G GQR+G+F+++
Sbjct  108  PLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  185  GVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPL  244
            GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  245  LRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAK  304
             R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  305  LPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYP  364
            LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYP
Sbjct  285  LPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  365  AIDIEASISRAMTALITEKHYARVRNFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITL  424
            AID+ A++SR    + ++ H      +++ L+ +Q    L+ +G Y +G D   DKAI  
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  425  WPQLEAFLQQG  435
             P++ +FL+Q+
Sbjct  403  YPDICTFLRQS  413

1070) fliI in NC_009092


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/396 (47%), Positives = 276/396 (70%), Gaps = 12/396 (3%)

Query  47   VGSLCSIATMAGDLIAEVIGFDDKLLYLMPIEELSGVMPGAKVTPLGEQTGLNVGMGLLG  106
            +G LC I   +G+ +AEV+G+++    L P+   +G+  G +V +L  +  + VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGNGAPIDG--LGQLHTDQKATRHATMLNPLARRAISEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G P+DG  L ++   +  +  +    ++ R++I++PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPP---AMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADvivvglvgergrevkeFIEEILGAEGRSRSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+ E R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPKLVERAGNGGAGQGSITAFYTVLTEGDDLQDPIADAARAILDGHIVLSRA  344
            YPP+VF+ LP+L+ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDVEASISRVAPMVISDAHLEATRRVKQMYSLYQQNRDLISIGAYTQGSDP  404
            LA+ GHYPAIDV A++SRV P+V S+ H + +  +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMKEAISFDSSALMLGQL  440
              D+AI   P + +FLRQ+ K+ +   ++ L++ +L
Sbjct  395  DTDKAIDTYPDICTFLRQS-KDEVC--GPELLIEKL  427

1071) fliI in NC_015856


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 173/386 (45%), Positives = 248/386 (65%), Gaps = 21/386 (5%)

Query  81   AEVVGFAGDRLFLMPQTEVAGLLPGARVYPLETasaagnggapaepgsKRLPAGAGMLGR  140
            AEVVG+ G + +L P T  AGL  G +V +L                  ++P G ++LGR
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRR--------------HQVPVGEALLGR  100

Query  141  VVDAAGRPLDGLGPLDFSREVPLSAAPINPLARAPIDSVLDVGVRAINALLTVGRGQRMG  200
            V+D+ GRPLDG    +  +     A P  ++ R PI   L  G+RAI+++ T G GQR+G
Sbjct  101  VIDGFGRPLDGRELPEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVG  159

Query  201  LFAGSGVGKSVLLGMMARYTSAEVIIVGLIGERGREVKDFIENTLGVEGLARAVVVAAPA  260
            +F+++GVGKS LL+M+     A+  ++ LIGERGREV++FI+ TL+ E   R V+V A +
Sbjct  160  IFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATS  219

Query  261  DTSPLLRLQGAAYATSLAEYFRDQGKDVLLIMDSLTRYAMAQREIALAVGEPPATKGYPP  320
            D ++L R+++   AT++AE+FRD+GK V+L+ DSLTRYA A REIALA GE + +  YPP
Sbjct  220  DRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPP  279

Query  321  SVFAKLPALVERAGNGARDASGKGGAITAFYTVLTEGDDQQDPIADAARAILDGHVVLSR  380
            +VF+ LP L+ER+G G +      G+ITAFYTVL EGDD ++P+AD  R++LDGH+VLSR
Sbjct  280  GVFSALPRLLERTGMGEK------GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  381  SLAESGHYPAIDIEASISRAMTSLIEPGQFDAVRRFKQMLSRYQRNRDLISVGAYAAGHD  440
             LAE GHYPAID+ A++SR    +    + +    +++ L+ YQ    LI +G Y  G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  441  LQLDKAIALYPKIEAFLQQGMAERAG  466
             + DKAI  YP I +FL+Q+  E  G
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDEVCG  419

1072) fliI in NC_011748


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1073) fliI in NC_020163


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 181/409 (45%), Positives = 266/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGTETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I   +        +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1074) fliI in NC_010468


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1075) fliI in NC_012947


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1076) fliI in NC_012759


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1077) EcDH1_1707 in NC_017625


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1078) fliI in NC_017638


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1079) fliI in NC_009801


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 181/409 (45%), Positives = 266/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGTETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I   +        +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1080) fliI in NC_011745


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 181/409 (45%), Positives = 266/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGTETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I   +        +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1081) ETEC_2044 in NC_017633


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1082) fliI in NC_009800


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1083) fliI in NC_011741


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1084) fliI in NC_010473


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1085) fliI in NC_000913


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1086) fliI in NC_007779


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1087) fliI in NC_017660


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1088) EKO11_1833 in NC_016902


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1089) fliI in NC_011993


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1090) fliI in NC_022364


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1091) fliI in NC_013353


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1092) fliI in NC_018650


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1093) fliI in NC_018661


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1094) fliI in NC_018658


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1095) fliI in NC_011353


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1096) fliI in NC_002655


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1097) fliI in NC_002695


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1098) fliI in NC_013008


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1099) fliI in NC_013361


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1100) fliI in NC_017634


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1101) fliI in NC_017663


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 181/410 (45%), Positives = 266/410 (65%), Gaps = 18/410 (4%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGTETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I   +        +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTT-ETAALITP  145
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+        + P
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  146  PFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIV  205
            P  ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V
Sbjct  128  P--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV  185

Query  206  VGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQ  265
            + LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G+
Sbjct  186  LVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGK  245

Query  266  HVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAF  325
            +V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAF
Sbjct  246  RVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAF  303

Query  326  YTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHY  385
            YTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H 
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  386  ARVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                 +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1102) fliI in NC_011415


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 181/409 (45%), Positives = 266/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGTETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I   +        +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1103) ECSF_1793 in NC_013654


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1104) fliI in NC_017641


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1105) fliI in NC_017635


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1106) fliI in NC_017664


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1107) fliI in NC_017906


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1108) fliI in NC_004547


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (956),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/411 (45%), Positives = 264/411 (65%), Gaps = 19/411 (4%)

Query  28   RYGRLTRATGLVLEA--TGLHMPLGATCLIERQNGSKVEEIESEVVGFNGQKLFLMPLEE  85
            R GR+   ++ +L+A   G+ M  G  C I      K  E  +EVVG+NG K +L P+  
Sbjct  21   RWGRIQDVSATLLNAWLPGVFM--GELCCI------KPGEELAEVVGINGSKALLSPFTS  72

Query  86   VEGITPGARVYARVGQDSSSQGKQLPLGPELLGRVLDGSAKPLDGLPAPDTGYRAPLITP  145
              G+  G +V A        +  Q+P+G  LLGRV+DG ++PLDG   P+   +     P
Sbjct  73   TAGLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  146  PVNPLQRTAIDSVLDVGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIV  205
            P  ++ R +I   L  G+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V
Sbjct  127  P-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV  185

Query  206  VGLIGERGREVKDFIENILGTEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGH  265
            + LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G 
Sbjct  186  LVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGK  245

Query  266  HVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSVTAF  325
            +V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GS+TAF
Sbjct  246  RVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAF  303

Query  326  YTVLTEGDDQQDPIADSARAILDGHIVLSRQLAESGHYPAIDIEASISRAMTALIDEDHY  385
            YTVL EGDD ++P+AD  R++LDGHIVLSR+LAE GHYPAID+ A++SR    +  ++H 
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  386  ASVRQFKQLLSSYQRNRDLVSVGAYAAGSDPMLDKAIRLYPHLEAFLQQGM  436
                 +++ L+ YQ    L+ +G Y  G D   DKAI  YP++ +FL+Q+ 
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

1109) fliI in NC_016822


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1110) fliI in NC_007384


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1111) fliI in NC_007650


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 173/396 (44%), Positives = 264/396 (67%), Gaps = 7/396 (1%)

Query  41   GERCVIESADGDRIDAQVVGFNREETFLMPFKKPVGLVAGAQVLSCDRQGSLRIGRSWLG  100
            GE C I +++     A+VVG+N   ++L PF    GL  G QV++  R+  + +G + LG
Sbjct  43   GELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  101  RIVNGLGEAIDGRGPLGGDVALRAHPA-PVNPLRKRPVRDTLDVGVRAIDGLLTLGRGQR  159
            R+++G+G ++DGR     +V  +   A P  ++ ++P+ + L  G+RAID++ T G GQR
Sbjct  100  RVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  160  VGLMAGSGVGKSMLLGMITRATQADVVVVGLIGERGREVREFVDHALGEAGLAKSVLVAA  219
            VG+ +++GVGKS LL+M+  A +AD  V+ LIGERGREVREF+D +L+E    + V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  220  PADESPLMRLKAAELCHAIAAHFRDTGANVLLLVDSLTRYAMAQREIALSVGEPPATRGY  279
             +D ++L R++A  +  +IA  FRD G  V+LL DSLTRYA A REIAL+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  280  PPSVFGMLPQLVETAGNGEGAGSMSAIYTVLAEGDDQNDPVVDTARAILDGHIVLTRELA  339
            PP+VF+ LP+L+E +G GE  GS++A+YTVL EGDD N+P+ D  R++LDGHIVL+R LA
Sbjct  278  PPGVFSALPRLLERTGMGE-KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  340  ERGHYPAIDVPRSVSRCMSQVAGAEHEALARKVKEMIGRHEQVRDLIPLGGYVQGADPAT  399
            ERGHYPAIDV  ++SR  + V++ EH  LA  ++  ++  ++V  LI +G Y +G D  T
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  400  DEAVAKAARIDAFLRQDMRDVARRDATLAALRELIA  435
            D A+   + I +FLRQ   +V   +  +  L+++++
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1112) EAM_2663 in NC_013971


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 174/401 (44%), Positives = 276/401 (69%), Gaps = 12/401 (2%)

Query  15   IQGNVIEAHLPGTRIGEICEIEKSLLEPEVVGFAQVIGFNKEHTLLSLLNDNNGFSRDNV  74
            + + +++A LPG  +GE+C I  +        +A+V+G+N   +LLS +    G+  ++ 
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  75   LLPTGKPFRVAVSERTLGAILDATGTIQGRLDGGPVAAPTGGENLETGGVPRDFTQRKPI  134
            +++  +  +V+V+E  LG ++D+ G     LDG  ++        + +++P     R+PI
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGR---PLDGRELPEVC---WKDYDAMPPPAMVRQPI  135

Query  135  AVPLATGVRAIDGLLTCGQGQRMGIFAAAGCGKTSLMSMIIEHSEADIYVIGLIGERGRE  194
            + PL TG+RAID++ TCG+GQR+GIF+A+G GK++L++M+ + ++AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  195  VTEFVEELrrssrrsKVVLVYATSDRSCVERCNAAQVASTVAEYFCEQGKNVLLFIDSVT  254
            V EF++       R + V+V ATSDR+ +ER  A  VA+T+AE+F ++GK V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  255  RYARALRDVALSMGELPARRGYPASVFEALPKLLERPGRFLTGSISAFYTVLIENEEESD  314
            RYARA R++AL+ GE +    YP++VF ALP+LLER G    GSI+AFYTVL+E ++ ++
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  315  VIGDEVRSILDGHIYLSKKLAAKGHYPAIDVLQSISRVFQQVTQPEHQQLATHFRDYLVR  374
             ++DEVRS+LDGHI LS++LA +GHYPAIDVL ++SRVF  VT  EH+QLA+ +R  L  
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  375  QNDMQLFIDLGEYKRGENEDNDAAFDKKSAMEAFLKQRMAE  415
             ++++L+I +GEY+RG + D D A+D  + + +FL+Q   E
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1113) spaI1 in NC_013961


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 174/401 (44%), Positives = 276/401 (69%), Gaps = 12/401 (2%)

Query  15   IQGNVIEAHLPGTRIGEICEIEKSLLEPEVVGFAQVIGFNKEHTLLSLLNDNNGFSRDNV  74
            + + +++A LPG  +GE+C I  +        +A+V+G+N   +LLS +    G+  ++ 
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  75   LLPTGKPFRVAVSERTLGAILDATGTIQGRLDGGPVAAPTGGENLETGGVPRDFTQRKPI  134
            +++  +  +V+V+E  LG ++D+ G     LDG  ++        + +++P     R+PI
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGR---PLDGRELPEVC---WKDYDAMPPPAMVRQPI  135

Query  135  AVPLATGVRAIDGLLTCGQGQRMGIFAAAGCGKTSLMSMIIEHSEADIYVIGLIGERGRE  194
            + PL TG+RAID++ TCG+GQR+GIF+A+G GK++L++M+ + ++AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  195  VTEFVEELrrssrrsKVVLVYATSDRSCVERCNAAQVASTVAEYFCEQGKNVLLFIDSVT  254
            V EF++       R + V+V ATSDR+ +ER  A  VA+T+AE+F ++GK V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  255  RYARALRDVALSMGELPARRGYPASVFEALPKLLERPGRFLTGSISAFYTVLIENEEESD  314
            RYARA R++AL+ GE +    YP++VF ALP+LLER G    GSI+AFYTVL+E ++ ++
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  315  VIGDEVRSILDGHIYLSKKLAAKGHYPAIDVLQSISRVFQQVTQPEHQQLATHFRDYLVR  374
             ++DEVRS+LDGHI LS++LA +GHYPAIDVL ++SRVF  VT  EH+QLA+ +R  L  
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  375  QNDMQLFIDLGEYKRGENEDNDAAFDKKSAMEAFLKQRMAE  415
             ++++L+I +GEY+RG + D D A+D  + + +FL+Q   E
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1114) fliI in NC_013971


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (956),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 182/446 (41%), Positives = 278/446 (63%), Gaps = 19/446 (4%)

Query  10   DTIERTEAKMGAIPAFRRYGRLTRATGLVMEAVGLKLP---IGAICVVERQTRNGIMPVE  66
            + ++R   K  +  ++ R GR+   ++ +++A    LP   +G +C +      +     
Sbjct  4    ELMQRLRLKYPPPDGYCRWGRIQDVSATLLNA---WLPGVFMGELCCIKPGEELA-----  55

Query  67   CEVVGFKDQLLYLMPLEHVDGVLPGTRVYAPDGDSYEGKQLPVGPQLLGRVLDAQGRPLD  126
             EVVG+++    L P+    G+  G +V A         Q+PVG  LLGRV+D+ GRPLD
Sbjct  56   -EVVGINGSKALLSPFTSTAGLHCGQQVMALR----RRHQVPVGEALLGRVIDGFGRPLD  110

Query  127  GRPAPLKTSSASLFTQPINPLHRDPIKSVLDVGVRAINGLLTVGRGQRMGLFAGSGVGKS  186
            GR  P         + P  ++ R+PI   L  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  GRELP-EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  187  VLLGMMARYTDADVIVVGLIGERGREVKDFIENILGAEGIERAVVIAAPADVSPVLRMQG  246
             LL+M+    DAD  V+ LIGERGREV++FI+  L+ E   R V++ A +D +++ R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  247  AVYATRLAEDFRDRGMNVLLIMDSLTRFAMAQREVALAIGEPPATKGYPPSVFARLPALV  306
               AT +AE FRD G  V+L+ DSLTR+A A RE+ALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  307  ERAGNGVAGGGSVTAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAESGHYPAIDIE  366
            ER+G G    GS+TAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ 
Sbjct  290  ERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  367  ASISRAMTELIPHAQYRNVQSFKQQLSSYQRNSDLVSVGAYVSGSDALLDRAIARYPQME  426
            A++SR    + +H + +    ++++L+ YQ    L+ +G Y  G D+  D+AI  YP++ 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  427  SYLHQAVHESCGYAEAVSALSALLPE  452
            ++L+Q+ +E CG    +  L  +L E
Sbjct  408  TFLRQSKDEVCGPELLIEKLHQILTE  433

1115) fliI3 in NC_013961


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (956),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 182/446 (41%), Positives = 278/446 (63%), Gaps = 19/446 (4%)

Query  10   DTIERTEAKMGAIPAFRRYGRLTRATGLVMEAVGLKLP---IGAICVVERQTRNGIMPVE  66
            + ++R   K  +  ++ R GR+   ++ +++A    LP   +G +C +      +     
Sbjct  4    ELMQRLRLKYPPPDGYCRWGRIQDVSATLLNA---WLPGVFMGELCCIKPGEELA-----  55

Query  67   CEVVGFKDQLLYLMPLEHVDGVLPGTRVYAPDGDSYEGKQLPVGPQLLGRVLDAQGRPLD  126
             EVVG+++    L P+    G+  G +V A         Q+PVG  LLGRV+D+ GRPLD
Sbjct  56   -EVVGINGSKALLSPFTSTAGLHCGQQVMALR----RRHQVPVGEALLGRVIDGFGRPLD  110

Query  127  GRPAPLKTSSASLFTQPINPLHRDPIKSVLDVGVRAINGLLTVGRGQRMGLFAGSGVGKS  186
            GR  P         + P  ++ R+PI   L  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  GRELP-EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  187  VLLGMMARYTDADVIVVGLIGERGREVKDFIENILGAEGIERAVVIAAPADVSPVLRMQG  246
             LL+M+    DAD  V+ LIGERGREV++FI+  L+ E   R V++ A +D +++ R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  247  AVYATRLAEDFRDRGMNVLLIMDSLTRFAMAQREVALAIGEPPATKGYPPSVFARLPALV  306
               AT +AE FRD G  V+L+ DSLTR+A A RE+ALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  307  ERAGNGVAGGGSVTAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAESGHYPAIDIE  366
            ER+G G    GS+TAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ 
Sbjct  290  ERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  367  ASISRAMTELIPHAQYRNVQSFKQQLSSYQRNSDLVSVGAYVSGSDALLDRAIARYPQME  426
            A++SR    + +H + +    ++++L+ YQ    L+ +G Y  G D+  D+AI  YP++ 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  427  SYLHQAVHESCGYAEAVSALSALLPE  452
            ++L+Q+ +E CG    +  L  +L E
Sbjct  408  TFLRQSKDEVCGPELLIEKLHQILTE  433

1116) BurJV3_1934 in NC_015947


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (955),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 179/362 (50%), Positives = 255/362 (71%), Gaps = 3/362 (0%)

Query  81   AEVVGFAGERTYLMPSAELHGLLPNARVVPSArrggvevgegllgrvIDSDGVPLDGKGP  140
            AEVVG+ G ++ L P +   GL    +V++  RR  V VGE+LLGRVID+ G PLDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  141  IRAEGHVGMAGVSINPLAREPITQPLDVGVRAINALLPIGRGQRVGLFAGSGVGKSTLLG  200
            +      +  +++  ++ R+PITQPL  G+RAI+++   G GQRVG+F+++GVGKSTLL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  201  MMTRYTAADVIVVGLIGERGREVRDFVETTLGEEGLRRAVVVASPADRPPLARLHGAYRA  260
            M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V + +DRP+L R+++ + A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  261  TAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYPPSVFAKLPALVERAG  320
            T+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  YPP+VF+ LP L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  321  NGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVADSGLYPAIDVESSVS  380
             G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+A+ G YPAIDV +++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  381  RVVTEIADEPWRLRIRKLKRLVSAYSANRDLIAIGAYQRGNDAATDEALERWPEIMEFLG  440
            RV   ++ +  R     L+R ++ Y     LI IG YQRG D+ TD A++  P+I  FL 
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  441  QD  442
            Q 
Sbjct  412  QS  413

1117) fliI in NC_010943


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (955),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 179/362 (50%), Positives = 255/362 (71%), Gaps = 3/362 (0%)

Query  78   AEVVGFAGERTYLMPSAELHGLLPNARVVPSArrggvevgegllgrvIDSDGVPLDGKGP  137
            AEVVG+ G ++ L P +   GL    +V++  RR  V VGE+LLGRVID+ G PLDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  138  IRAEGHVGMAGVSINPLAREPITQPLDVGVRAINALLPIGRGQRVGLFAGSGVGKSTLLG  197
            +      +  +++  ++ R+PITQPL  G+RAI+++   G GQRVG+F+++GVGKSTLL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  198  MMTRYTAADVIVVGLIGERGREVRDFVETTLGEEGLRRAVVVASPADRPPLARLHGAYRA  257
            M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V + +DRP+L R+++ + A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  258  TAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYPPSVFAKLPALVERAG  317
            T+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  YPP+VF+ LP L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  318  NGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVADSGLYPAIDVESSVS  377
             G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+A+ G YPAIDV +++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  378  RVVTEIADEPWRLRIRKLKRLVSAYSANRDLIAIGAYQRGNDAATDEALERWPEIMEFLG  437
            RV   ++ +  R     L+R ++ Y     LI IG YQRG D+ TD A++  P+I  FL 
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  438  QD  439
            Q 
Sbjct  412  QS  413

1118) Smal_1877 in NC_011071


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (955),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 179/362 (50%), Positives = 255/362 (71%), Gaps = 3/362 (0%)

Query  78   AEVVGFAGERTYLMPSAELHGLLPNARVVPSArrggvevgegllgrvIDSDGVPLDGKGP  137
            AEVVG+ G ++ L P +   GL    +V++  RR  V VGE+LLGRVID+ G PLDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  138  IRAEGHVGMAGVSINPLAREPITQPLDVGVRAINALLPIGRGQRVGLFAGSGVGKSTLLG  197
            +      +  +++  ++ R+PITQPL  G+RAI+++   G GQRVG+F+++GVGKSTLL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  198  MMTRYTAADVIVVGLIGERGREVRDFVETTLGEEGLRRAVVVASPADRPPLARLHGAYRA  257
            M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V + +DRP+L R+++ + A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  258  TAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYPPSVFAKLPALVERAG  317
            T+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  YPP+VF+ LP L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  318  NGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVADSGLYPAIDVESSVS  377
             G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+A+ G YPAIDV +++S
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  378  RVVTEIADEPWRLRIRKLKRLVSAYSANRDLIAIGAYQRGNDAATDEALERWPEIMEFLG  437
            RV   ++ +  R     L+R ++ Y     LI IG YQRG D+ TD A++  P+I  FL 
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  438  QD  439
            Q 
Sbjct  412  QS  413

1119) fliI in NC_013716


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (955),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 173/371 (47%), Positives = 253/371 (69%), Gaps = 14/371 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYAKNIASEGLHSGKQLPLGPALLGRVLDGSGK  126
            +EVVG+NG + +L P+    G+  G +V        +L+   Q+P+G ALLGRV+DG G+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGR  107

Query  127  PLDGLPSPDTT--ETGALITQPFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGS  184
            PLDG   P+    + +A+   P  ++ R PI + L TG+R+I+++ T G GQR+G+F+++
Sbjct  108  PLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  185  GVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGADGRARSVVIAAPADVSPL  244
            GVGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  245  LRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAK  304
             R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  305  LPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYP  364
            LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYP
Sbjct  285  LPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  365  AIDIEASISRAMTALISEQHYAKVRQFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIAL  424
            AID+ A++SR    + S++H      +++ L+ +Q    L+ +G Y +G D   DKAI  
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  425  WPQLEAFLQQG  435
             P++ +FL+Q+
Sbjct  403  YPDICTFLRQS  413

1120) W5S_1799 in NC_017845


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (955),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 172/369 (47%), Positives = 245/369 (67%), Gaps = 9/369 (2%)

Query  67   SEVVGFNGQKLFLMPLEEVEGITPGARVYARVGQDSSSQGKQLPLGPELLGRVLDGSAKP  126
            +EVVG+NG K +L P+    G+  G +V A        +  Q+P+G  LLGRV+DG ++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRP  108

Query  127  LDGLPAPDTGYRAPLITPPFNPLQRTPIESVLDVGVRAINALLTVGRGQRMGLFAGSGVG  186
            LDG   P+   +     PP  ++ R PI   L  G+RAI+++ T G GQR+G+F+++GVG
Sbjct  109  LDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  187  KSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGTEGRARSVVIAAPADVSPLLRM  246
            KS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  247  QGAAYATRIAEDFRDRGHHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPA  306
            ++   AT IAE FRD G +V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  307  LVERAGNGIHGGGSVTAFYTVLTEGDDQQDPIADSARAILDGHIVLSRQLAESGHYPAID  366
            L+ER+G G    GS+TAFYTVL EGDD ++P+AD  R++LDGHIVLSR+LAE GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  367  IEASISRAMTALIDEGHYASVRQFKQLLSSYQRNRDLVSVGAYAAGSDPMLDKAIRLYPH  426
            + A++SR    +  + H      +++ L+ YQ    L+ +G Y  G D   DKAI  YP+
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  427  LEAFLQQGM  435
            + +FL+Q+ 
Sbjct  406  ICTFLRQSK  414

1121) fliI in NC_013421


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (955),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 172/369 (47%), Positives = 245/369 (67%), Gaps = 9/369 (2%)

Query  67   SEVVGFNGQKLFLMPLEEVEGITPGARVYARVGQDSSSQGKQLPLGPELLGRVLDGSAKP  126
            +EVVG+NG K +L P+    G+  G +V A        +  Q+P+G  LLGRV+DG ++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRP  108

Query  127  LDGLPAPDTGYRAPLITPPFNPLQRTPIESVLDVGVRAINALLTVGRGQRMGLFAGSGVG  186
            LDG   P+   +     PP  ++ R PI   L  G+RAI+++ T G GQR+G+F+++GVG
Sbjct  109  LDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  187  KSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGTEGRARSVVIAAPADVSPLLRM  246
            KS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  247  QGAAYATRIAEDFRDRGHHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPA  306
            ++   AT IAE FRD G +V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  307  LVERAGNGIHGGGSVTAFYTVLTEGDDQQDPIADSARAILDGHIVLSRQLAESGHYPAID  366
            L+ER+G G    GS+TAFYTVL EGDD ++P+AD  R++LDGHIVLSR+LAE GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  367  IEASISRAMTALIDEGHYASVRQFKQLLSSYQRNRDLVSVGAYAAGSDPMLDKAIRLYPH  426
            + A++SR    +  + H      +++ L+ YQ    L+ +G Y  G D   DKAI  YP+
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  427  LEAFLQQGM  435
            + +FL+Q+ 
Sbjct  406  ICTFLRQSK  414

1122) fliI in NC_008825


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  256 bits (956),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 181/403 (45%), Positives = 259/403 (65%), Gaps = 26/403 (6%)

Query  70   VGSVCEVRMDGQPPVLAEVVGFAADRAYLMPTGELHGLASGARVVPRSTPSVAPVLGEAH  129
            +G +C ++ + +   LAEVVG+ + +A L P     GL  G +V++              
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALR------------  86

Query  130  HPWRRSEDRTRHLPIGDGLLGRVIDPLGMPLDRLGPIGAVRNEPLVRRPINAMERDPVRE  189
                    R +++P+G++LLGRVID +G PLD        +++     P  AM R+P+ +
Sbjct  87   --------RRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD-YDAMPPPAMVRQPITQ  137

Query  190  PLDTGVRAINAMLTVGRGQRIGLFAGSGVGKSVLLGMMAKYTAADVIVVGLIGERGREVK  249
            PL TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+ +   AD  V+ LIGERGREV+
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  250  EFIEDILGEEGLKRSIVVAAPADSPPLTRMQGAAYATAIAEHFRDRGQHVLLLMDSLTRY  309
            EFI+  L+EE  KR ++V A +D P+L R+++   AT+IAE FRD G++V+LL DSLTRY
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  310  AMAQREIALAIGEPPATKGYPPSCFAKLPQLVERSGNGLNGCGSITAFYTVLSEGDDQQD  369
            A A REIALA GE + +  YPP+ F+ LP+L+ER+G G +  GSITAFYTVL EGDD ++
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNE  315

Query  370  PIADAARAILDGHIVLSRDLAESGHYPAIDIERSASRVMHNVARPEHLQAARRLRQLWSR  429
            P+AD  R++LDGHIVLSR LAE GHYPAID+  + SRV   V+  EH Q A  LR+  + 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  430  YQKARDLIALGAYAPGHDVELDLAVKQHDAMRTLLQQDMHDAS  472
            YQ    LI +G Y  G D + D A+     + T+L+Q  ++  
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

1123) B932_0338 in NC_019396


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (954),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 173/358 (49%), Positives = 247/358 (69%), Gaps = 7/358 (1%)

Query  2    AFGSLEGIGPGCEARIPLSRQSSASLGVNESWLGRVVDPLGAPMDGKGALIPALDQQPVL  61
            +F S  G+  G +  ++L R+   ++G  E+ LGRV+D +G P+DG+   +P +  +   
Sbjct  69   PFTSTAGLHCG-QQVMALRRRHQVPVG--EALLGRVIDGFGRPLDGRE--LPEVCWKDYD  123

Query  62   NSPPNAATRARLGDRIDLGVRALDAFATCRRGQRLGLFAGSGVGKSTLLSMLARGADCDV  121
              PP A  R  + + +  G+RA+D+ ATC  GQR+G+F+++GVGKSTLL+ML  ++D D 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  122  AVIALVGERGREVREFIEDDLGPKGLARSVVVIATSDTPPLMRRDAAVSAMAIAEHFRDE  181
             V+ L+GERGREVREFI+  L+     R V+V+ATSD P+L R  A   A +IAE FRD+
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  182  GKSVLLLMDSVTRYCMALREIGLSAGEPPATRGYPPSVFADLPKLLERAGPGYPGKGMIT  241
            GK V+LL DS+TRY  A REI+L+AGE + +  YPP+VF+ LP+LLER+G G   KG IT
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSIT  301

Query  242  ALFTVLVEGDDHNEPVADAVRGILDGHIVLDRKIGEQGRYPAIDVLRSLSRAVPGCNSAE  301
            A++TVLVEGDD NEP+AD VR++LDGHIVL R+++E+G+YPAIDVL +LSR  P   S E
Sbjct  302  AFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHE  361

Query  302  ENRLTRQARATMATYERMADMIRLGAYKSGTEKDVDEAIRLMPQLDTFLSQGKNERSG  359
            + +L+   R  +A Y+ +  +IR+G Y+ G + D D AI   P++ TFL Q+K+E  G
Sbjct  362  HRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

1124) fliI in NC_004347


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (954),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 186/382 (49%), Positives = 264/382 (70%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMVGELIAEVVGFDDELLYLMPIEELRGVLPGARVVPLGEQAGLNVGLSLLG  106
            +G LC I    GE +AEVVG+++    L P+    G+  G +V++L  +  + VG +LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGNGVPLDG--LGALSTEQQAPRHSNAINPLSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG  L  +   +  +  + A   + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGEKGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+E  R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRS  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSLYQQNKDLISIGAYAQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1125) fliI in NC_009831


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (954),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 185/380 (49%), Positives = 265/380 (70%), Gaps = 5/380 (1%)

Query  47   IGSLCSIETLAGELVAEVIGFDGELLYLMPIEELRGVLPGAKVTPLGEQTGLNVGMSLLG  106
            +G LC I   +GE +AEV+G++G    L P+    G+  G +V +L  +  + VG +LLG
Sbjct  42   MGELCCIK--PGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGSGHPLDGLGRLQTEQRAPRHSQVINPLSRRAITEPLDVGVRAINAMLTVGKGQRM  166
            RV+DG G+PLDG   L    +   ++    ++ R++IT+PL  G+RAI+++ T G GQR+
Sbjct  100  RVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  167  GLFAGSGVGKSVLLGMMTRGTTADvivvglvgergrevkeFIEEILGEEGRARSVVVAAP  226
            G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+EE R R V+V A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  227  ADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKGYP  286
            +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  287  PSVFAKLPKLVERAGNGGPGQGSITAFYTVLTEGDDLQDPIADAARAILDGHIVLSRSLA  346
            P+VF+ LP+L+ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGHIVLSR LA
Sbjct  279  PGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  347  DSGHYPAIDIEASISRVAPMVISPEHLESMRCVKQVYSLFQQNKDLISIGAYTQGSDPRI  406
            + GHYPAID+ A++SRV P+V S EH +    +++  +L+Q+   LI IG Y +G D   
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  407  DNAIRLQPAMNAFLRQTMKE  426
            D+AI   P + +FLRQ+  E
Sbjct  397  DKAIDTYPDICTFLRQSKDE  416

1126) fliI in NC_017047


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (954),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 172/368 (47%), Positives = 244/368 (67%), Gaps = 9/368 (2%)

Query  67   SEVVGFNGQSLFLMPLEEVEGILPGARVYARIAADGQTAGKQLPLGTQLLGRVLDGSAKP  126
            +EVVG+NG   +L P+    G+  G +V A           Q+P+G  LLGRV+DG ++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRP  108

Query  127  LDGLPPPDTGYRAALITPPFNPLQRTPITDVLDVGVRAINALLTVGRGQRMGLFAGSGVG  186
            LDG   P+   +     PP  ++ R PIT+ L  G+RAI+++ T G GQR+G+F+++GVG
Sbjct  109  LDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  187  KSVLLGMMARYTKADVIVVGLIGERGREVKDFIENILGDEGRARSVVIAAPADVSPLLRM  246
            KS LL+M+     AD  V+ LIGERGREV++FI+  L++E R R V++ A +D ++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  247  QGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPA  306
            ++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  307  LVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRRLAESGHYPAID  366
            L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  367  IEASISRAMTSLIDDAQYGRVRNFKQLLSSYQRNRDLISVGAYAAGSDPMLDRAIKLYPQ  426
            + A++SR    +  + +      +++ L+ YQ    LI +G Y  G D   D+AI  YP+
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  427  MENFLQQD  434
            +  FL+Q 
Sbjct  406  ICTFLRQS  413

1127) Rahaq_2492 in NC_015061


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (954),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 172/368 (47%), Positives = 244/368 (67%), Gaps = 9/368 (2%)

Query  67   SEVVGFNGQSLFLMPLEEVEGILPGARVYARIAADGQTAGKQLPLGTQLLGRVLDGSAKP  126
            +EVVG+NG   +L P+    G+  G +V A           Q+P+G  LLGRV+DG ++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRP  108

Query  127  LDGLPPPDTGYRAALITPPFNPLQRTPITDVLDVGVRAINALLTVGRGQRMGLFAGSGVG  186
            LDG   P+   +     PP  ++ R PIT+ L  G+RAI+++ T G GQR+G+F+++GVG
Sbjct  109  LDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  187  KSVLLGMMARYTKADVIVVGLIGERGREVKDFIENILGDEGRARSVVIAAPADVSPLLRM  246
            KS LL+M+     AD  V+ LIGERGREV++FI+  L++E R R V++ A +D ++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  247  QGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPA  306
            ++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  307  LVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRRLAESGHYPAID  366
            L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  367  IEASISRAMTSLIDDAQYGRVRNFKQLLSSYQRNRDLISVGAYAAGSDPMLDRAIKLYPQ  426
            + A++SR    +  + +      +++ L+ YQ    LI +G Y  G D   D+AI  YP+
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  427  MENFLQQD  434
            +  FL+Q 
Sbjct  406  ICTFLRQS  413

1128) BN865_02150c in NC_022132


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (954),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 178/420 (43%), Positives = 275/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAVFGEITKISATSIEIRGLKTGVGDIIKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEATK-  121
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   E    
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  122  -YMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMGD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV   
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLLARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAIAKKEFMQKFLGQNPEE  419
            + S EH+ LA  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1129) fliI in NC_008345


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (953),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 187/379 (50%), Positives = 264/379 (70%), Gaps = 9/379 (2%)

Query  47   VGSLCSIETMVGELVAEVVGFDDKLLYLMPIEELRGVLPGARVKPLGEQSGLNVGLSLLG  106
            +G LC I    GE +AEVVG+++    L P+    G+  G +V +L  +  + VG +LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGSGVPLDG--LGPLNTDQHASRHGPYINPLSRRAITEPLDVGVRAINSMLTVGKGQ  164
            RV+DG G PLDG  L  +   +  +   P   ++ R++IT+PL  G+RAI+S+ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPP---AMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGSKADIIvvglvgergrevKEFIEDILGKEGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  ++ AD  V+ L+GERGREV+EFI+  L+ E R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYDVLLLMDSLTRYAQAQREVALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A RE+ALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGAGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRQ  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR+
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDVEASISRVAPMVISEEHLEAMRKVKQMYSLYQQNRDLISIGAYSQGSDP  404
            LA+ GHYPAIDV A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQG  423
              D+AI   P + +FLRQ+
Sbjct  395  DTDKAIDTYPDICTFLRQS  413

1130) S58_72220 in NC_020453


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (953),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 197/419 (48%), Positives = 292/419 (70%), Gaps = 13/419 (3%)

Query  30   RGRVIQVSGTLIRAIVPDARVGDICLLRSAHASDDLRAEIVGIEGGVALLTPLGDVAGLS  89
            +GR+ +VS+TL+ A +P+  +G++C      ++++L AE+VGI+G+ ALL+P+   AGL 
Sbjct  22   WGRIQDVSATLLNAWLPGVFMGELC---CIKPGEEL-AEVVGINGSKALLSPFTSTAGLH  77

Query  90   ARTEVVSTRQALGIMVGPAllgrvvdglgrlldvQERG---WPEFDQVrgvrgaapapla  146
               +V++ R+   + VG ALLGRV+DG+GR LD +E     W ++D +        +   
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  147  rrlvgrplSLGIRAIDGLLSCGEGQRIGIYGEPGAGKSSLVAQIVQNADVDVCVVALIge  206
              +       GIRAID++ +CGEGQR+GI++ PG GKS+L+A + + +D D  V+ LIGE
Sbjct  138  PLMT------GIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191

Query  207  rgrevremverCLAGAARARSVVIVATSDRPPTERVTAAYVATTIAEYFRDRNARVLLVQ  266
            RGREVRE ++  L+  +R R V++VATSDRP+ ERV A +VATTIAE+FRD   RV+L+ 
Sbjct  192  RGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  267  DSVTRFARALREIGLAAGEPPTRRGFPPSVFAALPELLERSGPGVTGSITAFYTVLVEGD  326
            DS+TR+ARA REI+LAAGE +    +PP+VF+ALP LLER+G G  GSITAFYTVLVEGD
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  327  GTADPIAEETRSILDGHIALSPKLAQSAHFPAIDIVSSLSRVMDQIVTSRHRAAAMRVRE  386
            +  +P+A+E RS+LDGHI LS +LA+ +H+PAID++++LSRV   + +  HR  A  +R 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  387  LIARYAELEFLLQVGEYKAGSDPIADEAIAKQEAIKSFLRQGLGEAVPWDRTIQQLEQL  445
             +A Y E+E+L+++GEY+ G D  +D AI     I +FLRQ+ +E    +  I++L+Q+
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1131) Celgi_0460 in NC_015671


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (953),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 178/381 (47%), Positives = 265/381 (70%), Gaps = 10/381 (2%)

Query  39   VGDLVRVGDGPDAVLAEVVAATGGSAHCMPLGATRGLGAGLPVRPAGALR----VPvgsg  94
            +G+L  +  G +  LAEVV+  G+ A   P+ +T GL  G  V    ALR    VPVG +
Sbjct  42   MGELCCIKPGEE--LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGEA  96

Query  95   llgrvldglgrPIDGKGPLRAQAWVPVDGTAPHPLERARVDTPLDLGVRVLDTLVTAGRG  154
            LLGRV+DG+GRP+DG+  L    W   D+ +P ++ R  +  PL  G+R +D++ T G G
Sbjct  97   LLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  155  QRLGLFAGSGVGKSSLLSMIARGTEAEVSVIALVGERGREVREFLEDDLGPEGLARSVVV  214
            QR+G+F+++GVGKS+LL+M+  + +A+ +V+ L+GERGREVREF++  L+ E   R V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  215  IATSDEPPLVRLRSAFVATRIAEHLRDEGRHAVLMMDSLTRVAMAQREIGLSVGEPPATR  274
            +ATSD P+L R+R+ FVAT IAE +RD+G++ VL+ DSLTR A A REI+L+ GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  275  GYPPSTFALLAQLLERAGTGPRGSVTGLYTVLVDGDDHNEPIADAARSILDGHVVLDRRL  334
             YPP+ F+ L++LLER+G G +GS+T++YTVLV+GDD NEP+AD  RS+LDGH+VL RRL
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  335  AVAGHFPSVDALGSISRVASRVTTGEQRAAAQRLRSVMAARRAAQDLLDVGAYVAGTNPL  394
            A  GH+P++D L+++SRV + VT+ E+R  A  LR  +A  +  + L+ +G Y  G +  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  395  VDAAVTHGAQIDAFLQQGMDE  415
             D A+   ++I +FL+Q+ DE
Sbjct  396  TDKAIDTYPDICTFLRQSKDE  416

1132) fliI in NC_017656


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (953),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 172/369 (47%), Positives = 250/369 (68%), Gaps = 10/369 (2%)

Query  67   SEVVAFNGQRLFLMPLEEVEGVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGK  126
            +EVV++NG + +L P+    G+  G +V        +L+   Q+P+G ALLGRV+DG G+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGR  107

Query  127  PLDGLPSPDTTETGALITPPFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGV  186
            PLDG   P+    +    PP  ++ R PI + L TG+R+I+++ T G GQR+G+F+++GV
Sbjct  108  PLDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGV  166

Query  187  GKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLR  246
            GKS LL+M+     AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L R
Sbjct  167  GKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALER  226

Query  247  MQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLP  306
            +++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP
Sbjct  227  VRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALP  286

Query  307  ALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAI  366
             L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAI
Sbjct  287  RLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI  344

Query  367  DIEASISRAMTALISEQHYARVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWP  426
            D+ A++SR    + S++H      +++ L+ +Q    L+ +G Y +G D   DKAI   P
Sbjct  345  DVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  427  QLEGYLQQG  435
            ++  +L+Q+
Sbjct  405  DICTFLRQS  413

1133) fliI in NC_013941


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (953),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 182/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVAFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVV++NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1134) fliI in NC_010498


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (953),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 268/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+NG + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSFGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1135) Spea_0080 in NC_009901


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (953),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 191/431 (45%), Positives = 294/431 (69%), Gaps = 15/431 (3%)

Query  16   KVPVAQVY---GRLTRVNGLLLEAVGCQLGTGDRCHIECRDKQLVEAEVVGFYKDTLCLM  72
            K P ++ Y   GR+  V++ LL+A    +  G+ C I   + +L  AEVVG+      L 
Sbjct  12   KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL--AEVVGINGSKALLS  68

Query  73   PIEAASGLMPGARVMPIEGRCLIPSGLGILGRVldglgqpldglgCIKHLPHV---PLQH  129
            P+ +++GL  G +VM++  R  +P G ++LGRV+DG+G+PLDG    ++LP+V     + 
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG----RELPEVCWKDYDA  124

Query  130  KPTNPLMRKAIEEPLDVGIRAINALLPIGRGQRLGLFAGSGVGKSVLLGMMTRFTEADVV  189
             P  +++R++I +PL  GIRAI+++   G GQR+G+F+++GVGKS LL+M+    +AD  
Sbjct  125  MPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN  184

Query  190  VVGLIGERGREVKEFIDESLGEEGRKRAVVIAAPADTTPLMRMRAMRLCHHIAATYRDQG  249
            V+ LIGERGREV+EFID +L+EE RKR V++ A +D  +L R+RA+ +   IA  +RD+G
Sbjct  185  VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNG  244

Query  250  KQVLLLVDSLTRYAQAQREIALSLGEPPATKGYPPSAFAQLPSLVEMAGNGQHPTGTLTA  309
            K+V+LL DSLTRYA+A REIAL+ GE + +  YPP+ F+ LP L+E +G G+   G++TA
Sbjct  245  KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITA  302

Query  310  FYTVLTEGDDQQDPIADSARAILDGHIVLSRKLAEKGHFPAIDIGASVSRLATKVASEET  369
            FYTVL EGDD ++P+AD  R++LDGHIVLSR+LAE+GH+PAID+ A++SR+   V+S+E 
Sbjct  303  FYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEH  362

Query  370  LKQGQWFRHLNSRYNEVKDLLPLGGYQAGHDPEMDMAVSAYPKMAEFLRQSTNSQADHAH  429
             + +  +R+  + Y+EV  L+ +G YQ G D + D A+ +YP +  FLRQS +   +   
Sbjct  363  RQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPEL  422

Query  430  SITALAQLVSN  440
             I  L Q++++
Sbjct  423  LIEKLHQILTE  433

1136) fliI in NC_009901


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (952),  Expect = 5e-69, Method: Compositional matrix adjust.
 Identities = 188/396 (48%), Positives = 275/396 (70%), Gaps = 12/396 (3%)

Query  47   IGSLCAIETMAGDLIAEVIGFDDQLLYLMPIEELRGVLPGAKVTPLGEQSGLNVGLSLLG  106
            +G LC I   +G+ +AEV+G+++    L P+    G+  G +V +L  +  + VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGSGLPIDG--LGNLKTDQKASSHAPAINPLARRAISEPLDVGVRAINSMLTVGKGQ  164
            RV+DG G P+DG  L ++   +  +  +PA   + R++I++PL  G+RAI+S+ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGPEGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+ E R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPKLVERAGNGGGKQGSITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRS  344
            YPP+VF+ LP+L+ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISPEHLEAMRKVKQVYSLYQQNKDLISIGAYSQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMKDSVTFDSSTLMLSQL  440
              D+AI   P + +FLRQ+ KD V   ++ L++ +L
Sbjct  395  DTDKAIDTYPDICTFLRQS-KDEVC--GPELLIEKL  427

1137) PCC21_026830 in NC_018525


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (952),  Expect = 5e-69, Method: Compositional matrix adjust.
 Identities = 171/369 (47%), Positives = 245/369 (67%), Gaps = 9/369 (2%)

Query  67   SEVVGFNGQKLFLMPLEEVEGITPGARVYARVGQDSSSQGKQLPLGPELLGRVLDGSAKP  126
            +EVVG+NG K +L P+    G+  G +V A        +  Q+P+G  LLGRV+DG ++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRP  108

Query  127  LDGLPAPDTGYRAPLITPPFNPLQRTPIESVLDVGVRAINALLTVGRGQRMGLFAGSGVG  186
            LDG   P+   +     PP  ++ R PI   L  G+RAI+++ T G GQR+G+F+++GVG
Sbjct  109  LDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  187  KSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGTEGRARSVVIAAPADVSPLLRM  246
            KS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  247  QGAAYATRIAEDFRDRGHHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPA  306
            ++   AT IAE FRD G +V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  307  LVERAGNGIHGGGSVTAFYTVLTEGDDQQDPIADSARAILDGHIVLSRQLAESGHYPAID  366
            L+ER+G G    GS+TAFYTVL EGDD ++P+AD  R++LDGHIVLSR+LAE GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  367  IEASISRAMTALIDEGHYASVRQFKQLLSSYQRNRDLVSVGAYAAGSDPMLDRAIRLYPH  426
            + A++SR    +  + H      +++ L+ YQ    L+ +G Y  G D   D+AI  YP+
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  427  LEAFLQQGM  435
            + +FL+Q+ 
Sbjct  406  ICTFLRQSK  414

1138) Tint_1218 in NC_014153


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (952),  Expect = 5e-69, Method: Compositional matrix adjust.
 Identities = 179/385 (47%), Positives = 258/385 (68%), Gaps = 8/385 (2%)

Query  48   LGERCRISTEQNRVIDAEVVGFNGDHVQLMALGEVQGLTPGARVHPVPGDIRIPVGPELL  107
            +GE C I   ++    AEVVG+NG    L ++    GL  G +V ++    ++PVG  LL
Sbjct  42   MGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  108  GRVLDGNGRPLDGDGALLASHYTTLSTQQINPLGRALVRQPLDVGVRAINALFTVGRGAR  167
            GRV+DG GRPLDG   L         +    ++ R  + QPL  G+RAI+++ T G G R
Sbjct  99   GRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  168  MGLFAGSGVGKSVLLGMMARNTNADVIVVGLIGERGREVKEFIEDILGVEGRSRavvvaa  227
            +G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFI+  L+ E R R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  228  padapaLTRIRGARLATAMAEYYRDQGLNVLLLMDSVTRYALALREVALAAGEPPAARGF  287
             +D PAL R+R+  +AT++AE++RD+G  V+LL DS+TRYA A RE+ALAAGE + +  +
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  288  PPSVFAKLPALVERAGNGPEGGGSITAFYTVLMEGDDQQDPVADNVRAILDGHIVLSRRL  347
            PP+VF+ LP L+ER+G G    GSITAFYTVL+EGDD ++P+AD+VR++LDGHIVLSRRL
Sbjct  278  PPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  348  AEQGHFPAIDLQASISRVMPAIATPLELRRMQK-LKEMQSRYASQQDLIAVGAYTPGADL  406
            AE+GH+PAID+ A++SRV P +++  E R++   L+   + Y   + LI +G Y  G D 
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSH-EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  407  QLDQAVLAHVGIREFLIQDMHAAVG  431
            + D+A+ +  +I  FL Q  +   G
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCG  419

1139) fliI in NC_014500


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (952),  Expect = 5e-69, Method: Compositional matrix adjust.
 Identities = 183/411 (45%), Positives = 269/411 (66%), Gaps = 19/411 (4%)

Query  27   RYGRLTRATGLVLEA--TGLHMPLGSTCLIERQTGNQVDEVESEVVGFNGQKLFLMPLEE  84
            R GR+   ++ +L+A   G+ M  G  C I  + G+++    +EVVG+NG K +L P+  
Sbjct  21   RWGRIQDVSATLLNAWLPGVFM--GELCCI--KPGEEL----AEVVGINGSKALLSPFTS  72

Query  85   VEGIIPGARVYERVGLSGSSQGKQLPLGPALLGRVLDGSAKPLDGFPAPDTGYTAPLVTA  144
              G+  G +V   ++L    +  Q+P+G ALLGRV+DG ++PLDG   P+        + 
Sbjct  73   TAGLHCGQQV---MALR---RRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD-YDAM  125

Query  145  PFNPLQRTPIEHVLDVGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIV  204
            P  ++ R PI + L  G+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V
Sbjct  126  PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV  185

Query  205  VGLIGERGREVKDFIENILGTEGLARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGH  264
            + LIGERGREV++FI+  L+ E   R V++ A +D ++L R+++   AT IAE FRD G 
Sbjct  186  LVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGK  245

Query  265  HVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAF  324
            +V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAF
Sbjct  246  RVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAF  303

Query  325  YTVLTEGDDQQDPIADSARAILDGHIVLSRQLAESGHYPAIDIEASISRAMTALIDENHY  384
            YTVL EGDD ++P+AD  R++LDGHIVLSR+LAE GHYPAID+ A++SR    +  ++H 
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  385  SAVRQFKQSLSSYQRNRDLINVGAYAAGSDPLLDRAIQLYPQMQHFLQQGM  435
                 +++ L+ YQ    LI +G Y  G D   D+AI+ YP++  FL+Q+ 
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

1140) fliI in NC_014012


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (951),  Expect = 6e-69, Method: Compositional matrix adjust.
 Identities = 184/385 (48%), Positives = 266/385 (70%), Gaps = 15/385 (3%)

Query  47   IGSLCSIETLVGDLVAEVIGFDDNILYLMPIEELRGVLPGAKVTPLGEQTGLNVGLSLLG  106
            +G LC I    G+ +AEV+G++++   L P+    G+  G +V +L  +  + VG +LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGNGQPLD-----NLGRLQTDQKAPRHSPTINPLARRAITEPLDVGVRAINAMLTVG  161
            RV+DG G+PLD     ++ + + D  +P       ++ R++IT+PL  G+RAI+++ T G
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPP------PAMVRQPITQPLMTGIRAIDSVATCG  153

Query  162  KGQRMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGEEGRARSV  221
             GQR+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+EE R R V
Sbjct  154  EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCV  213

Query  222  VVAAPADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPA  281
            +V A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + 
Sbjct  214  IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAV  273

Query  282  TKGYPPSVFAKLPKLVERAGNGGPGQGSITAFYTVLTEGDDLQDPIADAARAILDGHIVL  341
            +  YPP+VF+ LP+L+ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGHIVL
Sbjct  274  SGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  342  SRSLADSGHYPAIDVEASISRVAPMVISTEHLESMRRVKQVYSLFQQNKDLISIGAYTQG  401
            SR LA+ GHYPAIDV A++SRV P+V S EH +    +++  +L+Q+   LI IG Y +G
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRG  391

Query  402  SDPRIDNAIRLQPAMNAFLRQKMKE  426
             D   D+AI   P + +FLRQ   E
Sbjct  392  VDTDTDKAIDTYPDICTFLRQSKDE  416

1141) fliI in NC_006840


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (951),  Expect = 6e-69, Method: Compositional matrix adjust.
 Identities = 171/371 (47%), Positives = 258/371 (70%), Gaps = 7/371 (1%)

Query  54   GEIEAEVVGFSGENLFLMPSEQVSGVLPGAKVTPIADGSGIPVGMELLGRVVDGVGNPID  113
            GE  AEVVG++G + +L P    +G+  G +V ++     +PVG  LLGRV+DG G P+D
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  114  G--LGELYTEHTASFTSEPINPLSRKPISEPLDVGLKAINGLLTVGKGQRLGLFAGSGVG  171
            G  L E+   +   + + P  ++ R+PI++PL  G++AI+++ T G GQR+G+F+++GVG
Sbjct  111  GRELPEVCWKD---YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  172  KSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGPEGRQRsvvvaapadasaLMRL  231
            KS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+ E R+R V+V A +D +AL R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  232  KGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPA  291
            ++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  292  LVERAGNGNENQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAID  351
            L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR +A+ GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  352  VEKSVSRVMPQITDEEHMLMSKAVRQVLSTCRKNQDLVSIGAYKPGTDPAIDQAFTLKPR  411
            V  ++SRV P +T +EH  ++  +R+ L+  +  + L+ IG Y+ G D   D+A+   P 
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  412  LDEYLQQRMKE  422
            +  +L+Q   E
Sbjct  406  ICTFLRQSKDE  416

1142) fliI in NC_011184


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (951),  Expect = 6e-69, Method: Compositional matrix adjust.
 Identities = 171/371 (47%), Positives = 258/371 (70%), Gaps = 7/371 (1%)

Query  54   GEIEAEVVGFSGENLFLMPSEQVSGVLPGAKVTPIADGSGIPVGMELLGRVVDGVGNPID  113
            GE  AEVVG++G + +L P    +G+  G +V ++     +PVG  LLGRV+DG G P+D
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  114  G--LGELYTEHTASFTSEPINPLSRKPISEPLDVGLKAINGLLTVGKGQRLGLFAGSGVG  171
            G  L E+   +   + + P  ++ R+PI++PL  G++AI+++ T G GQR+G+F+++GVG
Sbjct  111  GRELPEVCWKD---YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  172  KSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGPEGRQRsvvvaapadasaLMRL  231
            KS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+ E R+R V+V A +D +AL R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  232  KGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPA  291
            ++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  292  LVERAGNGNENQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAID  351
            L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR +A+ GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  352  VEKSVSRVMPQITDEEHMLMSKAVRQVLSTCRKNQDLVSIGAYKPGTDPAIDQAFTLKPR  411
            V  ++SRV P +T +EH  ++  +R+ L+  +  + L+ IG Y+ G D   D+A+   P 
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  412  LDEYLQQRMKE  422
            +  +L+Q   E
Sbjct  406  ICTFLRQSKDE  416

1143) fliI in NC_016514


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  255 bits (951),  Expect = 7e-69, Method: Compositional matrix adjust.
 Identities = 173/371 (47%), Positives = 253/371 (69%), Gaps = 14/371 (3%)

Query  77   SEVVGFNGQRLFLMPLEEVEGILPGARVYAKNISGDGLQSGKQLPLGPALLGRVLDGSGK  136
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  137  PLDGLPSPDTT--ETGALITQPFNPLQRTAIEHVLDTGVRPINALLTVGRGQRMGLFAGS  194
            PLDG   P+    + +A+   P  ++ R +I + L TG+R+I+++ T G GQR+G+F+++
Sbjct  108  PLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  195  GVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPL  254
            GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  255  LRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAK  314
             R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  315  LPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYP  374
            LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYP
Sbjct  285  LPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  375  AIDIEASISRAMTALITEKHYARVRNFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAISL  434
            AID+ A++SR    + ++ H      +++ L+ +Q    L+ +G Y +G D   DKAI  
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  435  WPQLEAFLQQG  445
             P++ +FL+Q+
Sbjct  403  YPDICTFLRQS  413

1144) fliI in NC_014306


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  254 bits (947),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 172/351 (50%), Positives = 236/351 (68%), Gaps = 18/351 (5%)

Query  103  HSGKQLM---------LGPELLGRVLDGSGRPLDGLPAPETGYRAPLITPPFNPLQRTPI  153
            H G+Q+M         +G  LLGRV+DG GRPLDG   PE   +     PP  ++ R PI
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP-PAMVRQPI  135

Query  154  TDVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTKADVIVVGLIGERGRE  213
            T+ L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  214  VKDFIENILGTEGRARAVVIAAPADVSPLLRMQGASYATRIAEDFRDRGQHVLLIMDSLT  273
            V++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  274  RYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIDGGGSITAFYTVLTEGDDQ  333
            RYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD 
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDM  313

Query  334  QDPIADSARAILDGHIVLSRRLAESGHYPAIDIEASISRVMAHLIDEPHYARVRQFKQLL  393
            ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SRV + +  + H      +++ L
Sbjct  314  NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRL  373

Query  394  SSYQRNRDLVSVGAYAAGSDPTLDKAIKLYPELETFLQQGMFERSTFDDAC  444
            + YQ    L+ +G Y  G D   DKAI  YP++ TFL+Q+       D+ C
Sbjct  374  ALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK------DEVC  418

1145) PC1_2578 in NC_012917


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  254 bits (948),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 172/369 (47%), Positives = 245/369 (67%), Gaps = 9/369 (2%)

Query  67   SEVVGFNGQKLFLMPLEEVEGITPGARVYARVGQDSSSQGKQLPLGPELLGRVLDGSAKP  126
            +EVVG+NG K +L P+    G+  G +V A        +  Q+P+G  LLGRV+DG ++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRP  108

Query  127  LDGLPAPDTGYRAPLITPPFNPLQRTPIESVLDVGVRAINALLTVGRGQRMGLFAGSGVG  186
            LDG   P+   +     PP  ++ R PI   L  G+RAI+++ T G GQR+G+F+++GVG
Sbjct  109  LDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  187  KSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGTEGRARSVVIAAPADVSPLLRM  246
            KS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  247  QGAAYATRIAEDFRDRGYHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPA  306
            ++   AT IAE FRD G +V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  307  LVERAGNGIHGGGSVTAFYTVLTEGDDQQDPIADSARAILDGHIVLSRQLAESGHYPAID  366
            L+ER+G G    GS+TAFYTVL EGDD ++P+AD  R++LDGHIVLSR+LAE GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  367  IEASISRAMTALIDEGHYASVRQFKQLLSSYQRNRDLVSVGAYAAGSDPMLDKAIRLYPH  426
            + A++SR    +  + H      +++ L+ YQ    L+ +G Y  G D   DKAI  YP+
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  427  LEAFLQQGM  435
            + +FL+Q+ 
Sbjct  406  ICTFLRQSK  414

1146) fliI in NC_017626


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  254 bits (947),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 182/409 (45%), Positives = 267/409 (66%), Gaps = 16/409 (3%)

Query  27   RYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNVQRLFLMPLEEVE  86
            R GR+   ++ +L+A    + +G  C I  + G E     +EVVG+N  + +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI--KPGEEL----AEVVGINGSKALLSPFTSTA  74

Query  87   GVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPP  146
            G+  G +V        +L+   Q+P+G ALLGRV+DG G+PLDG   P+    +    PP
Sbjct  75   GLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP  127

Query  147  FNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  206
              ++ R PI + L TG+R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  207  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQH  266
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  267  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFY  326
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  327  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYA  386
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    + S++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  387  RVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQG  435
                +++ L+ +Q    L+ +G Y +G D   DKAI   P++  +L+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1147) ST548_p6305 in NC_020181


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  254 bits (950),  Expect = 7e-69, Method: Compositional matrix adjust.
 Identities = 167/334 (50%), Positives = 233/334 (70%), Gaps = 3/334 (0%)

Query  107  KQLPLGPALLGRVLDGGARPLDGLPAPETGYRAPLITAPFNPLQRTPIEQVLDVGVRTIN  166
             Q+P+G ALLGRV+DG +RPLDG   PE   +    + P  ++ R PI Q L  G+R+I+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAID  147

Query  167  GLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAE  226
            ++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  227  GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA  286
             R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  287  IGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAIL  346
             GE + +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  347  DGHVVLSRRLAEAGHYPAIDIEASISRAMTSLIDDEHYRRVRTFKQMLASFQRNRDLISV  406
            DGH+VLSRRLAE GHYPAID+ A++SR    +  +EH +    +++ LA +Q    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  407  GAYAAGSDPLLDKAITLYPQMETYLQQGIFERCG  440
            G Y  G D   DKAI  YP++ T+L+Q+  E CG
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

1148) fliI in NC_015663


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  254 bits (950),  Expect = 7e-69, Method: Compositional matrix adjust.
 Identities = 167/334 (50%), Positives = 233/334 (70%), Gaps = 3/334 (0%)

Query  107  KQLPLGPALLGRVLDGGARPLDGLPAPETGYRAPLITAPFNPLQRTPIEQVLDVGVRTIN  166
             Q+P+G ALLGRV+DG +RPLDG   PE   +    + P  ++ R PI Q L  G+R+I+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD-YDAMPPPAMVRQPITQPLMTGIRAID  147

Query  167  GLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAE  226
            ++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  227  GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA  286
             R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  287  IGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAIL  346
             GE + +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  347  DGHVVLSRRLAEAGHYPAIDIEASISRAMTSLIDDEHYRRVRTFKQMLASFQRNRDLISV  406
            DGH+VLSRRLAE GHYPAID+ A++SR    +  +EH +    +++ LA +Q    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  407  GAYAAGSDPLLDKAITLYPQMETYLQQGIFERCG  440
            G Y  G D   DKAI  YP++ T+L+Q+  E CG
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

1149) fliI in NC_010334


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  254 bits (950),  Expect = 7e-69, Method: Compositional matrix adjust.
 Identities = 187/396 (48%), Positives = 276/396 (70%), Gaps = 12/396 (3%)

Query  47   VGSLCAIETMAGSLIAEVIGFDDQLLYLMPIEELRGVLPGAKVTPLGEQSGLNVGLSLLG  106
            +G LC I   +G  +AEV+G+++    L P+    G+  G +V +L  +  + VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVLDGSGQPIDGLGNLRTDQKASRHVAAINP--LARRAISEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G+P+DG  +L   +   ++  A+ P  + R++I++PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDG-RELP--EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGPEGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+ E R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPKLVERAGNGGGQQGSITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRS  344
            YPP+VF+ LP+L+ER+G   G++GSITAFYTVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGM--GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISPEHLEAMRKVKQVYSLYQQNKDLISIGAYSQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMKDSVTFDSSTLMLSQL  440
              D+AI   P + +FLRQ+ KD V   ++ L++ +L
Sbjct  395  DTDKAIDTYPDICTFLRQS-KDEVC--GPELLIEKL  427

1150) Deba_0915 in NC_014365


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  254 bits (950),  Expect = 7e-69, Method: Compositional matrix adjust.
 Identities = 174/372 (47%), Positives = 261/372 (71%), Gaps = 6/372 (1%)

Query  50   LDEGPVLGEVVGFKGQGVQIMPYADTRGLRPGCLVSSAGGAGLVKVGQALLGRVLDGLGN  109
            +  G  L+EVVG++G    + P++ T GL+ G  V +      V VG+ALLGRV+DG+G 
Sbjct  48   IKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGR  107

Query  110  PVDGGPMPE--WDQLYPLYRQAPSAMGRPRISQPVDVGVKVINALLTLGKGQRIGIFAGS  167
            P+DG  +PE  W +  ++   +P+AM R  I+QP+  G++ I+++ T G GQR+GIF+++
Sbjct  108  PLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  168  GVGKSTLMSMIARHTQADISVIGLVGERGRELREFIERDLGPEGLARSVVIVATSDQPAL  227
            GVGKSTL++M+    +AD +V+ L+GERGRE+REFI+  L+ E   R V++VATSD+PAL
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  228  VRMRAAYLATAVAEYFRDQSRDVILMMDSVTRFAMAGREVGLSIGEPPTTKGYTPSVFAQ  287
             R+RA ++AT++AE+FRD+++ V+L+ DS+TR+A A+RE++L+ GE + +  Y P+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  288  LPRLLERAgtsegggsitgiYTVLVEGDDVTEPVADAMRSILDGHFVLTRALADRGHYPA  347
            LPRLLER+      GSIT++YTVLVEGDD+ EP+AD +RS+LDGH+VL+R LA+RGHYPA
Sbjct  285  LPRLLERT-GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  348  IELLGSISRLARDINPPEVttaarrltellaayrrNEDLINIGAYADGSNPVIDRAIRMM  407
            I++L+++SR+   + + E    A  L   LA Y+  E LI IG Y  G +   D+AI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  408  ERINKFLTQPVE  419
              I  FL Q+ +
Sbjct  404  PDICTFLRQSKD  415

1151) DGI_0502 in NC_022444


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  254 bits (949),  Expect = 8e-69, Method: Compositional matrix adjust.
 Identities = 173/376 (47%), Positives = 258/376 (69%), Gaps = 11/376 (2%)

Query  59   RSGHIAAEVVGFRDGALLFMPYGDMRGIQPGSLIQNSSMPPHFPVGDSLLGRAVDAFGVP  118
            ++G+  AEVVG+ ++  L+ P+    G++ G  +       + PVG++LLGR +D+FG P
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRP  108

Query  119  LDAPQ--GACVPMHTGQHRPLFAS-PPNPLARPRILTPLDVGVRAINSLLTLGKGQRVGI  175
            LD+ +    C        +  + + PP ++ R  I  PL  G+RAI+S+ T G GQRVGI
Sbjct  109  LDGRELPEVC--------WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGI  160

Query  176  MAGSGVGKSTLMGMMARYTKADVNVIGLIGERGREVVEFMEKDLGPEGLARSCLVVATSD  235
             +++GVGKSTL++M+     AD NV+ LIGERGREV EF++  L+ E   R  +VVATSD
Sbjct  161  FSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSD  220

Query  236  QSPLVrlraayaatalaEHFRDQGKDVLLMMDSVTRFAMAAREVGLAVGEPPTTKGYTPS  295
            +++L R+RA + AT++AE FRD+GK V+L+ DS+TR+A AARE++LA GE + +  Y P+
Sbjct  221  RPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPG  280

Query  296  VFAQLPKLLERAGTNEKGTITGIYTVLVDGDDFNEPIADAVRSILDGHLVLTRELADQGH  355
            VF+ LP+LLER+G  EKG+IT++YTVLV+GDD NEP+AD VRS+LDGH+VL+R LA++GH
Sbjct  281  VFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  356  YPCIDILKSISRLKNDIISAEMCSAGQTVLRHMATYKRVEDMVNIGAYTPGANADIDKAL  415
            YP ID+L ++SR+   + S E    +  + R++A Y+ VE ++ IG Y  G ++D DKA+
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  416  QMIGPIRQFLQQPVAE  431
            +    I  FL+Q+  E
Sbjct  401  DTYPDICTFLRQSKDE  416

1152) CYCME_1873 in NC_021917


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  254 bits (949),  Expect = 8e-69, Method: Compositional matrix adjust.
 Identities = 176/395 (45%), Positives = 253/395 (65%), Gaps = 33/395 (8%)

Query  31   AEVVGFSGERLYLMPTGDIRGLEQDCRVIPMGLSSMAHV--GPGLLGRvvdgggkpidgk  88
            AEVVG++G +  L P     GL  +C    M+L    +V  G +LLGR            
Sbjct  55   AEVVGINGSKALLSPFTSTAGL--HCGQQVMALRRRHQVPVGEALLGR------------  100

Query  89   gpVHTTDTMPLHGRAMN-------------PLGRRAITEPLDVGIGTINSLLTVGQGQRI  135
              V      PL+GR +              ++ R++IT+PL  GI +I+S+ T G+GQR+
Sbjct  101  --VIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  136  GLFAGSGVGKSVLLGMMTKYTKADVVVVGLIGERGREVNEFVRKTLGAEGMARAVVVASP  195
            G+F+++GVGKS LL+M+ +   AD  V+ LIGERGREV EF+  TL+ E   R V+V + 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  196  ADDPPLMRMHGAMLATSIAEYFRDQGKNVLLLMDSLTRYAQAQREIALAINEPPATKGYP  255
            +D P+L R+++  +AT+IAE+FRD+GK V+LL DSLTRYA+A REIALA  E + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  256  PSVFSKLPSLVERAGNSDKGNGSITAFYTVLTEGDDTNDPIADASRAILDGHIHLSRRLA  315
            P+VFS LP L+ER+G ++K  GSITAFYTVL EGDD N+P+AD  R++LDGHI LSRRLA
Sbjct  279  PGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  316  EAGHFPAIDMEASVSRLMTEIVPEDHQEMAREFRKINSTYQQNADLINVGAYQPGSNSSV  375
            E GH+PAID+ A++SR+   + +++H+++A  +R+  + YQ+   LI +G YQ G ++  
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  376  DEAIDMHESMLEFLQQRITESVNFDESIEGLESVL  410
            D AID    +  FL+Q   E    +  IE L+ +L
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1153) Q91_0720 in NC_018697


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  254 bits (949),  Expect = 9e-69, Method: Compositional matrix adjust.
 Identities = 181/386 (47%), Positives = 263/386 (69%), Gaps = 15/386 (3%)

Query  70   AEVVGFSGERLYLMPTGDIRGLEQDCRVIPMGLSSMAHV--GPGLLGRvvdgggkpidgk  127
            AEVVG++G +  L P     GL  +C    M+L    +V  G +LLGRV+DG G+P+DG+
Sbjct  55   AEVVGINGSKALLSPFTSTAGL--HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR  112

Query  128  gpVHTT----DTMPLHGRAMNPLGRRAITEPLDVGIGTINSLLTVGQGQRIGLFAGSGVG  183
               +      D+MP       ++ R++IT+PL  GI +I+S+ T G+GQR+G+F+++GVG
Sbjct  113  ELPEVCWKDYDAMP-----PPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  184  KSVLLGMMTKYTKADVVVVGLIGERGREVNEFVRKTLGAEGMARAVVVASPADDPPLMRM  243
            KS LL+M+ +   AD  V+ LIGERGREV EF+  TL+ E   R V+V + +D P+L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  244  HGAMLATSIAEYFRDQGKNVLLLMDSLTRYAQAQREIALAINEPPATKGYPPSVFSKLPS  303
            ++  +AT+IAE+FRD+GK V+LL DSLTRYA+A REIALA  E + +  YPP+VFS LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  304  LVERAGNSDKGNGSITAFYTVLTEGDDTNDPIADASRAILDGHIHLSRRLAEAGHFPAID  363
            L+ER+G ++K  GSITAFYTVL EGDD N+P+AD  R++LDGHI LSRRLAE GH+PAID
Sbjct  288  LLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  364  MEASVSRLMTEIVPEDHQEMAREFRKINSTYQQNADLINVGAYQPGSNSSVDEAIDMHES  423
            + A++SR+   + +++H+++A  +R+  + YQ+   LI +G YQ G ++  D AID    
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  424  MLEFLQQRITESVSFDESIEGLESVL  449
            +  FL+Q   E  + +  IE L+ +L
Sbjct  406  ICTFLRQSKDEVCGPELLIEKLHQIL  431

1154) Bresu_1207 in NC_014375


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  254 bits (948),  Expect = 9e-69, Method: Compositional matrix adjust.
 Identities = 178/388 (46%), Positives = 264/388 (69%), Gaps = 9/388 (2%)

Query  55   AEVVGFRDSKALLMPFGPVEGVAPGADIHIIGQAAAVYPTTAWLGRIIDAFGQPIDGKGP  114
            AEVVG+ +SKALL PF +  G+  G ++  + +   V    A LGR+ID+FG+P+DG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  115  LPQGpapyplraappaaHSRGRVGERLDLGVRSMDVFTTTCRGQRLGIFAGSGVGKSVLL  174
            LP+         +PPA   R  + + L  G+R++D  +T   GQR+GIF+++GVGKS LL
Sbjct  114  LPEVCWKDYDAMPPPAM-VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  175  SMLARQATCDAVVVGLIGERGREVREFIEETLGEEGLRRAIVVVATSDEPALKRRQAAYM  234
            +ML   +  D+ V+ LIGERGREVREFI+ TL+EE  +R ++VVATSD PAL R +A ++
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  235  TMAISEYLRDQDLEVLCLMDSVTRFAMAQREIGLAAGEPPTTKGYTPTVFSELPKLLERA  294
            + +I+E++RD++  V+ L DS+TR+A A REI+LAAGE + +  Y P VFS LP+LLER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  295  GPGPIRPDGTTAAPITAMFTVLVDGGDHDEPIADAVRGILDGHIVMDRKIAERGRFPAID  354
            G G         ++ITA +TVLV+G+D +EP+AD VR++LDGHIV+ R++AERG++PAID
Sbjct  293  GMG-------EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  355  VLKSVSRTLPGCQTPPERELNRRARQCLSAYSSMEELIKIGAYRAGADPITDRAIALNPA  414
            VL ++SR +P   +  +R+L    R+ L+ Y  +E LI+IG Y+ G D  TD+AI   P 
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  415  LEAFLGQDKDDVTRMADSFNRLESILNQ  442
            + +FL Q KD+V      +++L+ IL +
Sbjct  406  ICTFLRQSKDEVCGPELLIEKLHQILTE  433

1155) fliI in NC_015554


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  253 bits (945),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 184/370 (50%), Positives = 267/370 (73%), Gaps = 3/370 (0%)

Query  55   GEIEAEVVGFGADITYLMPTEAVRGIVPGSRVMPLNRQSGLAVGMGLLGRVVDGNGNPLD  114
            GE  AEVVG+ +  + L P  +  G+  G +VM+L R+  ++VG +LLGRV+DG G PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  115  GLGEIKTETRVPTTRPPINPLIRRAITQPMDVGVRAINALNTVGVGQRMGLFAGSGVGKS  174
            G  E+    +      P  +++R++ITQP+  G+RAI+++ T G GQR+G+F+++GVGKS
Sbjct  111  G-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  175  VLLGMMTRGCEADvvvvglvgergrevKEFIHDILTeeeraravvvaaPADTSPLMRLKG  234
             LL+M+  + +AD  V+ L+GERGREV+EFI+  L+EE R R V+V A +D ++L R+++
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  235  CETAVTIAEYFRDQGLKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
               A TIAE+FRD+G +V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  295  ERAGNGSEKQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIE  354
            ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGH+VLSR LA+ GHYPAID+ 
Sbjct  290  ERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  ASISRVMPMVVSDEHQQMARRVRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAIN  414
            A++SRV P+V S+EH+Q+A  +R+  + Y++ + LI IG Y +G D   D AI + P I 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  AFLQQGMKNV  424
            +FL+Q+  +V
Sbjct  408  TFLRQSKDEV  417

1156) fliI in NC_014803


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  253 bits (944),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 179/369 (49%), Positives = 265/369 (72%), Gaps = 5/369 (1%)

Query  62   AEIVGFNDQTLYLMPNDHISGVLPGARVIPQVNDTGLPVGMSLLGRVVDGLGRPLDGLGK  121
            AE+VG+N+    L P    +G+  G +V++      +PVG +LLGRV+DG+GRPLDG  +
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG--R  112

Query  122  INAEHTLK-FAQNAINPLARRPISKPMDVGVRAINSVITVGQGQRMGLFAGSGVGKSVLL  180
              +E   K +   +  ++ R+PI++P+  G+RAI+SV T G+GQR+G+F+++GVGKS LL
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  181  GMMTRGSEADvivvglvgergrevkeFIEEILGVEGRKRsvvvaapadaspLMRLKGCES  240
            +M+  +++AD  V+ L+GERGREV+EFI+  L+ E RKR V+V A +D ++L R+++   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  241  AVTIAEYFRDQGLNVLLLLDSVTRYAMAQREIALAVGEPPATKGYPPSVFAKLPALVERA  300
            A TIAE+FRD+G  V+LL DS+TRYA A REIALA GE + +  YPP+VF+ LP L+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  301  GNGGEGQGSITAFFTVLSEGDDMQDPIADAARAILDGHIVLSRDLADSGHYPAIDIEKSI  360
            G G   +GSITAF+TVL EGDDM++P+AD  R++LDGHIVLSR LA+ GHYPAID+  ++
Sbjct  293  GMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  361  SRVMPQVVSESHMQQARVLKQVYSMYQQNKDMITLGAYQKGSDQMLDQAINMMPRVNAFL  420
            SRV P V S+ H Q A +L++  ++YQ+   +I +G YQ+G D   D+AI+  P + +FL
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  421  QQGMRDVIS  429
            +Q+  +V +
Sbjct  411  RQSKDEVCG  419

1157) D782_1694 in NC_020063


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  253 bits (946),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 173/371 (47%), Positives = 252/371 (68%), Gaps = 14/371 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNASGDGLQSGKQLPLGPALLGRVLDGSGK  126
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  127  PLDGLPAPETT--ETGALITPPFNPLQRTPIERVLDTGVRPINALLTVGRGQRMGLFAGS  184
            PLDG   PE    + +A+  P+   + R PI + L TG+R+I+++ T G GQR+G+F+++
Sbjct  108  PLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  185  GVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGSEGRARSVVIAAPADVSPL  244
            GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  245  LRMQGAAYATRVAEDFRDRGLHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAK  304
             R+++   AT +AE FRD G +V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  305  LPALVERAGNGISGGGSVTAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYP  364
            LP L+ER+G G    GS+TAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYP
Sbjct  285  LPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  365  AIDIEASISRAMTALISEPHYARVRHFKQLLSSFQRNRDLVSVGAYAKGSDPMLDRAIAL  424
            AID+ A++SR    + S+ H      +++ L+ +Q    L+ +G Y +G D   D+AI  
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  425  WPQLEAFLQQG  435
             P++ +FL+Q+
Sbjct  403  YPDICTFLRQS  413

1158) fliI in NC_009802


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  253 bits (945),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 166/368 (46%), Positives = 253/368 (69%), Gaps = 7/368 (1%)

Query  51   KSKNGLGMVTQIKTDGAYISPFGFVEGFRIGDFVYESDQGMSIPVGPNLLGRVVDPFMKP  110
            K+ + L+ V  I+   A +SPF    G++ G+ V    +   +PVG  LLGRV+D F +P
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRP  108

Query  111  IDGKGAIDTT--EYMPIMRAPIDAMKRGLINEPFSVGIKTIDGLLTCGKGQKLGIFAGSG  168
            +DG+   +    +Y ++   P  AM R  I +P+  GI++ID++ TCG GQ++GIF+++G
Sbjct  109  LDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  169  VGKSTLMGMIVKNTLAPIKVVALIGERGREVPEFIEKNLGGDL-EGTVIIVATSDDSSLM  227
            VGKSTL++M+ +   A  +V+ LIGERGREV EFI+  L+ +     VI+VATSD ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  228  RKYGAFCAMSVAEYFKQQGNDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSSLTLL  287
            R  + F A ++AE+F+++G+ V+++ DS+TR+A A REI+LA GE + S  YPP+ ++ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  288  PQLMERAGKEEGKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPI  347
            P+L+ER+G  E KGSITAF+TVLVEGDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I
Sbjct  286  PRLLERTGMGE-KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI  344

Query  348  NIQNSASRVMGDVIGKEHKLNAMKFKRLYSLLKENEVLLRIGAYQKGSDKELDLAISKKE  407
            ++  + SRV   V + EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI    
Sbjct  345  DVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  408  FMESFLKQ  415
             + +FL+Q
Sbjct  405  DICTFLRQ  412

1159) fliI in NC_018691


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  253 bits (944),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 191/428 (45%), Positives = 280/428 (66%), Gaps = 16/428 (3%)

Query  12   ETLQRVGQRLTSTPPYRESGRIVRATGLVLEAVGLRIP---LGSGCRIELAGRGFAEAQV  68
            E +QR+  +  +   Y   GRI   ++ +L+A   ++P   +G  C I  +G  +AE  V
Sbjct  4    ELMQRLRLKYPPPDGYCRWGRIQDVSATLLNA---WLPGVFMGELCCIK-PGEELAE--V  57

Query  69   VGFAGERLYLMPLAELHGLTPGARVLPLADEGGTRRFPLGETLLGRVVDGNGVPLDGGAA  128
            VG+ G +  L P++   GL  G +V++L      ++ P+GE+LLGRV+DG G PLDG   
Sbjct  58   VGINGSKALLSPFTSTAGLHCGQQVMALRR---RHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  129  LGDCPHGGLDSAPLNPMDRAPIDTPIDVGIRAINALLTIGRGQRMGLFAGSGVGKSVLLG  188
               C   + D+ P  +M R PI  P+  GIRAI+++ T G GQR+G+F+++GVGKS LL+
Sbjct  115  PEVC-WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  189  MMARYTSADVIVVGLIGERGREVKEFIEHILGPEGrrravvvaaPADTSPLQRLQGAAYA  248
            M+     AD  V+ LIGERGREV+EFI+  L+ E R+R V+V A +D ++L+R+++   A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  249  TRLAEGFRDAGHNVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPGLVERAG  308
            T +AE FRD G  V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  309  NGAPGSGSITAFYTVLTEGDDQQDPIADAARAILDGHVVLSRPLAEAGHYPAIDIEASIS  368
             G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GHYPAID+ A++S
Sbjct  294  MGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  369  RAMTQLVPTAQLRRAQRFKQLFSLYQRNRDLIGVGAYSPGHDPQLDQAVQLYPRLQALLR  428
            R    + +  + + A  +++ ++LYQ    LI +G Y  G D + D+A++ YP + ++LR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  429  QDINE-CA  435
            Q  +E C+
Sbjct  412  QSKDEVCG  419

1160) A3UG_14770 in NC_018079


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  253 bits (945),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 185/429 (44%), Positives = 278/429 (65%), Gaps = 18/429 (4%)

Query  12   LDRVEEKLTQVPDFRQYGKLTRATGLVMEAVGLKLP---IGALCIVERQTEQGIIPVESE  68
            ++R+  K     ++ + G++   ++ +++A    LP   +G LC +    E +      E
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNA---WLPGVFMGELCCIKPGEELA------E  56

Query  69   VVGFNGQTLFLMPLEHVDGILPGARIYALQSDNHAGKQLPVGPHLLGRVLDAQGRPLDGR  128
            VVG+NG   +L P+    G+  G ++ AL+  +    Q+PVG  LLGRV+D+ GRPLDGR
Sbjct  57   VVGINGSKALLSPFTSTAGLHCGQQVMALRRRH----QVPVGEALLGRVIDGFGRPLDGR  112

Query  129  PAPGKPAAGLFTPTLNPLHRDPIKNVLDVGVRAINGLLTVGRGQRMGLFAGSGVGKSVLL  188
              P     +  +    ++ R+PI + L  G+RAI+++ T G GQR+G+F+++GVGKS LL
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  189  GMMARFTTADVIVVGLIGERGREVKDFIENILGEQGLaravvvaapadvSPILRMQGAVY  248
            +M+     AD  V+ LIGERGREV++FI+  L+E+   R V+V A +D +++ R+++   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  249  ATRIAEDFRERGLNVLLIMDSLTRYAMAQREVALAIGEPPATKGYPPSVFARLPALVERT  308
            AT IAE FR+ G  V+L+ DSLTRYA A RE+ALA GE + +  YPP+VF+ LP L+ERT
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  309  GNGVKGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASI  368
            G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++
Sbjct  293  GMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  369  SRAMTELIPHAQYRKVQRFKQLLSAYQRNRDLVSVGAYVKGSDAMLDQAIDKYPSLEAFL  428
            SR    + +H + +    +++ L+ YQ    L+ +G Y +G D+  D+AID YP + +FL
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  429  HQAIHERSG  437
            +Q+ +E  G
Sbjct  411  RQSKDEVCG  419

1161) fliI in NC_009839


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  253 bits (945),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 178/420 (43%), Positives = 276/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEVS--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   EV   
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1162) fliI in NC_008787


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  253 bits (945),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 178/420 (43%), Positives = 276/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEVS--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   EV   
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1163) ICDCCJ07001_188 in NC_014802


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  253 bits (945),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 178/420 (43%), Positives = 276/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEVS--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   EV   
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1164) fliI in NC_017280


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  253 bits (945),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 178/420 (43%), Positives = 276/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEVS--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   EV   
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1165) fliI in NC_014810


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  253 bits (945),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 172/410 (42%), Positives = 281/410 (69%), Gaps = 12/410 (2%)

Query  31   VFVQGFLPSV--GDVVKVERGDGKECLGMVVVVEQTQFGFAPFSFVEGCKVGDRVLFVKE  88
             ++++ LP+V  G++  +  G+    L+ VV ++ ++  ++PF+   G   G++V+ ++ 
Sbjct  31   TLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRR  87

Query  89   GLSFPVGEGLLGRVLDPLGNPLD--ELGFVRASAFAPVMVEPMKPLDRGVIDEPFGVGVK  146
                PVGE+LLGRV+D +G PLD  EL  V    + ++   P  ++ R  I +P+  G++
Sbjct  88   RHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIR  144

Query  147  SIDALLTCGKGQKLGIFAGSGVGKSTLMGMVVRGCSAPIKVIALIGERGREIPEFIHKNL  206
            +ID++ TCG GQ++GIF+++GVGKSTL++M+  +  A  +V+ LIGERGRE+ EFI+  L
Sbjct  145  AIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTL  204

Query  207  -QGNLDNTVLVVATSDDSPLMRKYGAFCAMSVAEYFKNQGHDVLFMMDSITRFAMAQREI  265
             +      V+VVATSD ++L R  + F A ++AE+F+++G  V+++ DS+TR+A A REI
Sbjct  205  SEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREI  264

Query  266  GLAMGEPPTSKGYPPSALTLLPQLMERAGKEKNKGSITAFFTVLVEGDDLSDPIADQARS  325
            +LA GE + S  YPP+ ++ LP+L+ER+G   +KGSITAF+TVLVEGDD+++P+AD+ RS
Sbjct  265  ALAAGETAVSGEYPPGVFSALPRLLERTGMG-EKGSITAFYTVLVEGDDMNEPLADEVRS  323

Query  326  ILDGHIVLSRELTDHGIYPPINILNSASRVSKEVSATEHMLAARKFRKLHALLKENEVLI  385
            +LDGHIVLSR L+++G YP+I++L + SRV   V++ EH   A  +R+  AL +E E+LI
Sbjct  324  LLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLI  383

Query  386  RIGSYQPGFDADLDEAIAKKAGMEAFMLQEEEEIVPSNTSIQQLIALMQE  435
            RIG YQ G D+D D AI   +++ +F+ Q  +E+  ++  I++L  ++ E
Sbjct  384  RIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1166) Nmul_A1348 in NC_007614


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  252 bits (942),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 170/344 (50%), Positives = 237/344 (69%), Gaps = 3/344 (0%)

Query  123  PVGEALLGRVVDGTGRPLDNLGPLEVERSASAAGSPINPLDREPISEVLDVGVRAINALL  182
            PVGEALLGRV+DG GRPLD     EV +    A +P  ++ R+PI++ L  G+RAI+++ 
Sbjct  92   PVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVA  150

Query  183  TVGRGQRMGLFAGSGVGKSVLLGMMARYTSADIIVVGLIGERGREVKDFIEQILGAEGLA  242
            T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ E   
Sbjct  151  TCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK  210

Query  243  RSVVVAAPADTWPLMRLQGASYATSVAEYFRDQGKNVLLIMDSLTRYAMAQREIALAIGE  302
            R V+V A +D  +L R+++   AT++AE+FRD+GK V+L+ DSLTRYA A REIALA GE
Sbjct  211  RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE  270

Query  303  PPATKGYPPSVFAKLPQLVERAGNGVKGSGSITAFYTVLAEGDDQQDPIADAARAILDGH  362
             + +  YPP+VF+ LP+L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGH
Sbjct  271  TAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGH  328

Query  363  IVLSRQLAESGHYPAIDIEASISRAMTSLISPEYFEQVRNFKQLFSRYQRSRDLISVGAY  422
            IVLSR+LAE GHYPAID+ A++SR    + S E  +    +++ ++ YQ    LI +G Y
Sbjct  329  IVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEY  388

Query  423  SPGNDRLLDRAIALYPKLEHFLQQTMVERAGYEESTRSLEALLA  466
              G D   D+AI  YP +  FL+Q+  E  G E     L+ +L+
Sbjct  389  QRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1167) fliI in NC_021741


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  252 bits (943),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 171/364 (47%), Positives = 245/364 (68%), Gaps = 9/364 (2%)

Query  71   GFNGQRLFLMPLEEVEGIVPGARVYARISPEGQSASKQLPLGPALLGRVLDGSAKPLDGL  130
            G+NG + +L P+    G+  G +V A           Q+P+G ALLGRV+DG ++PLDG 
Sbjct  59   GINGSKALLSPFTSTAGLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRPLDGR  112

Query  131  PAPETGYRAPLITAPFNPLQRTPIEQVLDVGVRTINGLLTVGRGQRMGLFAGSGVGKSVL  190
              PE   +    + P  ++ R PI Q L  G+R+I+++ T G GQR+G+F+++GVGKS L
Sbjct  113  ELPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  191  LGMMARYTQADVIVVGLIGERGREVKDFIENILGPEGRARSVVIAAPADVSPLLRMQGAA  250
            L+M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++  
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  251  YATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVER  310
             AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  311  AGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRRLAEAGHYPAIDIEAS  370
            +G G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A+
Sbjct  292  TGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  371  ISRAMTSLIDEEHYRRVRNFKQMLASYQRNRDLISVGAYVAGSDPLLDKAMTLYPQMEAY  430
            +SR    +  +EH +    +++ LA YQ    LI +G Y  G D   DKA+  YP++ ++
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  431  LQQG  434
            L+Q+
Sbjct  410  LRQS  413

1168) Y11_14231 in NC_017564


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  252 bits (941),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 169/365 (47%), Positives = 243/365 (67%), Gaps = 9/365 (2%)

Query  72   GFNGQRLFLMPLEEVEGIVPGARVYARITTGGASASKQLPLGPELLGRVLDGSAKPLDGL  131
            G+NG + +L P+    G+  G +V A           Q+P+G  LLGRV+DG ++PLDG 
Sbjct  59   GINGSKALLSPFTSTAGLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRPLDGR  112

Query  132  PAPETGYRAPLITPPINPLQRTAIEQVLDVGVRTINALLTVGRGQRMGLFAGSGVGKSVL  191
              PE   +     PP  ++ R +I Q L  G+R+I+++ T G GQR+G+F+++GVGKS L
Sbjct  113  ELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  192  LGMMARYTQADVIVVGLIGERGREVKDFIENILGPEGRARSVVIAAPADVSPLLRMQGAA  251
            L+M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++  
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  252  YATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVER  311
             AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  312  AGNGMSGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRRLAESGHYPAIDIEAS  371
            +  GM+  GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A+
Sbjct  292  T--GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  372  ISRAMTSLIDENHYSKVRQFKQLLASFQRNRDLVSVGAYAAGSDPLLDKAIALYPQMEIF  431
            +SR    +  ++H      +++ LA +Q    L+ +G Y  G D   DKAI  YP++  F
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  432  LQQGM  436
            L+Q+ 
Sbjct  410  LRQSK  414

1169) fliI in NC_020211


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  252 bits (942),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 175/382 (46%), Positives = 254/382 (67%), Gaps = 9/382 (2%)

Query  71   GFNGQRLFLMPLEEVEGIVPGARVYARIAPEGQSAGKQLPLGPALLGRVLDGSAKPLDGL  130
            G+NG + +L P+    G+  G +V A           Q+P+G ALLGRV+DG ++PLDG 
Sbjct  59   GINGSKALLSPFTSTAGLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRPLDGR  112

Query  131  PSPETGYRAPLITAPFNPLQRTPIEQVLDVGVRTINGLLTVGRGQRMGLFAGSGVGKSVL  190
              PE   +    + P  ++ R PI Q L  G+R+I+++ T G GQR+G+F+++GVGKS L
Sbjct  113  ELPEVCWKD-YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  191  LGMMARYTKADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAA  250
            L+M+     AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++  
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  251  YATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVER  310
             AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  311  AGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRRLAEAGHYPAIDIEAS  370
            +G G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A+
Sbjct  292  TGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  371  ISRAMTSLIDEEHYRRVRTFKQMLASYQRNRDLISVGAYAAGSDPLLDKAMTLYPQMEAY  430
            +SR    +  +EH +    +++ LA YQ    LI +G Y  G D   DKA+  YP++ ++
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  431  LQQGIFERSGYDEACQQLQQLI  452
            L+Q+  E  G +   ++L+Q++
Sbjct  410  LRQSKDEVCGPELLIEKLHQIL  431

1170) fliI in NC_009707


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  252 bits (942),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 178/420 (43%), Positives = 276/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGIGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEVT--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   EV   
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1171) fliI in NC_003912


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  252 bits (942),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 178/420 (43%), Positives = 276/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEVT--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   EV   
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1172) fliI in NC_017281


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  252 bits (942),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 178/420 (43%), Positives = 276/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEVT--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   EV   
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1173) YE105_C1717 in NC_015224


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  252 bits (942),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 181/424 (43%), Positives = 271/424 (64%), Gaps = 15/424 (3%)

Query  12   MDKFEERISQSTTIRRYGRLTRATGLVLEATGLQLPLGATCLIERHDNGevqevesevvG  71
            M+++  + + +    R GR+   ++ +L+A    + +G  C I   ++       +EVVG
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE------LAEVVG  59

Query  72   FNGQRLFLMPLEEVEGIVPGARVYARITTGGASASKQLPLGPELLGRVLDGSAKPLDGLP  131
            +NG + +L P+    G+  G +V A           Q+P+G  LLGRV+DG ++PLDG  
Sbjct  60   INGSKALLSPFTSTAGLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRPLDGRE  113

Query  132  APETGYRAPLITPPINPLQRTAIEQVLDVGVRTINALLTVGRGQRMGLFAGSGVGKSVLL  191
             PE   +     PP  ++ R +I Q L  G+R+I+++ T G GQR+G+F+++GVGKS LL
Sbjct  114  LPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  192  GMMARYTQADVIVVGLIGERGREVKDFIENILGPEGRARSVVIAAPADVSPLLRMQGAAY  251
            +M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  252  ATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERA  311
            AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  312  GNGMSGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRRLAESGHYPAIDIEASI  371
              GM+  GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++
Sbjct  293  --GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  372  SRAMTSLIDENHYSKVRQFKQLLASFQRNRDLVSVGAYAAGSDPLLDKAIALYPQMEIFL  431
            SR    +  ++H      +++ LA +Q    L+ +G Y  G D   DKAI  YP++  FL
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  432  QQGM  435
            +Q+ 
Sbjct  411  RQSK  414

1174) Reut_B5100 in NC_007348


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  252 bits (941),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 183/414 (45%), Positives = 263/414 (64%), Gaps = 25/414 (6%)

Query  74   AGQFSANLGGQRTAE--AEVVGFGADRLYLMPQSDVVGLLPGARVYPLEPSPQPEGASSP  131
            +G F ++L   + +E  AEVVG+ + +  L P +   GL  G +V +L    Q       
Sbjct  38   PGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQ-------  90

Query  132  REPGSKRLPVGEGMLGRVVDAAGRPLDGLGPIRAAQEVPLSAEQINP---LMRAPIQTVL  188
                   +PVGE++LGRV+D+ GRPLDG    R   EV     +  P   ++R PI   L
Sbjct  91   -------VPVGEALLGRVIDGFGRPLDG----RELPEVCWKDYDAMPPPAMVRQPITQPL  139

Query  189  DTGVRAINGMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTSADVIVVGLIGERGREVKEF  248
             TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EF
Sbjct  140  MTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREF  199

Query  249  IEHILGPEGRARSVVVAAPADCSPLLRMQGAAYSTRLAEYFRDQGKHVLLIMDSLTRYAM  308
            I+  L+ E R R V+V A +D ++L R+++   +T +AE+FRD+GK+V+L+ DSLTRYA 
Sbjct  200  IDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYAR  259

Query  309  AQREIALAIGEPPATKGYPPSVFAKLPTLVERTGNGPEGGGSITAFYTVLTEGDDQQDPI  368
            A REIALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+
Sbjct  260  AAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPL  317

Query  369  ADSARAILDGHVVLSRSLAEAGHYPAIDVEASISRAMTALIPPEQFSSVRRFKQLMSRYQ  428
            AD  R++LDGH+VLSR LAE GHYPAIDV A++SR    + + E+      +++ ++ YQ
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  429  RNRDLISVGAYVPGNDPELDLAIRLHPRMEAFLQQDIHERAEYDDAVGQLHSLF  482
                LI +G Y  G D + D AI   P + +FL+Q  +E    +  + +LH ++
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1175) fliI in NC_009662


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  252 bits (940),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 174/420 (42%), Positives = 277/420 (66%), Gaps = 11/420 (2%)

Query  6    NYLIKGKITSIKGPLIEAVLPDVSIGDLCYLDNGVE-AEVVGFRDGKTLLMTYDDLYgir  64
             Y   G+I  + + L++A LP+V +G+LC +  G E AEVVG+ ++K+LL  +    G++
Sbjct  18   GYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLH  77

Query  65   igsfissslssskigvgADLLGTVLDPFGNPLNKEKLQFETKVSLKN-ETINP--LLRER  121
             G  + +     ++ VG  LLG V+D FG PL+   L     V  K+ +++ P  ++R+ 
Sbjct  78   CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL---PEVCWKDYDAMPPPAMVRQP  134

Query  122  IKTPLDIGVRSINGLFTIGKGQRIGIFASAGVGKSTLLGMVSRFTSADINVIALIGERGR  181
            I  PL  G+R+I+++ T G GQR+GIF+++GVGKSTLL+M+     AD NV+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  182  EVREFIEDNLGKEGLEKSIVVVATSDQPPLAKLRAVHVAMAYASYFSKKGKDVLFLVDSL  241
            EVREFI+  L+ E   + ++VVATSD+P+L ++RA+ VA + A +F  +GK V++L DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  242  TRLAMAQREIGLLVGEPPTSKGYTPSVFTLLPKIIEQAGTFHNQGSITGIYTVLFEGEEL  301
            TR A A REI+L  GE + S  Y P+VF+ LP+++E++G   ++GSIT++YTVL EG+++
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDM  313

Query  302  SSDPIADAAVGFLDGHVVLSKEMAQKRVFPAVDPLKSISRLAPQLVPSEILEFQAQFIQI  361
             ++P+AD   ++LDGH+VLS+ +A++  +PA+D L ++SR+ P + + E  ++ A + + 
Sbjct  314  -NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  362  YALYKENEDMINMGLYKPGSSQKIDLAIKYYPK-CLDYLRQSINEPINLEKSFEDLKNLI  420
             ALY+E E +I +G Y+ G     D AI  YP  C  +LRQS +E    E  +E L +++
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC-TFLRQSKDEVCGPELLIEKLHQIL  431

1176) fliI in NC_011420


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (939),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 185/400 (47%), Positives = 271/400 (68%), Gaps = 13/400 (3%)

Query  42   VGDACRVFARDGRALACEVIGFSVGRAVLMPFGPLDGLGLGCRVETGGEPASFRPALSWL  101
            +G+ C +  + G  LA EV+G++ ++A+L PF +  GL  G +V +         + + L
Sbjct  42   MGELCCI--KPGEELA-EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  102  GRVVDGFGRPVDGRG--PLSRGDENRVLRAAPPHAYERRRIGPRLETGLRVVDTFVPLC-  158
            GRV+DGFGRP+DGR    + + D +    A PP A  R+ I   L TG+R +D+ V+ C 
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYD----AMPPPAMVRQPITQPLMTGIRAIDS-VATCG  153

Query  159  RGQRLGVFAGSGVGKSTLLAMLARSSAADVNVIGLIGERGREVQEFIQDDLGPEGLARSV  218
             GQR+G+F+++GVGKSTLLAML  ++ AD NV+ LIGERGREV+EFI+  L+ E   R V
Sbjct  154  EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCV  213

Query  219  VVVATSDEPALMRRQAAWLTLGLAEYFRDQGRDVLCMMDSVTRFAMAQREIGLSAGEPPT  278
            +VVATSD PAL R +A  ++  +AE+FRD+G+ V+ + DS+TR+A A REI+L+AGE + 
Sbjct  214  IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAV  273

Query  279  TKGYPPTVFAELPRLLERAGPGREGTGDITGIFTVLVEGGDHDEPVADAVRGILDGHLVL  338
            +  YPP VF+ LPRLLER+G G    G IT+++TVLVEG+D +EP+AD VR++LDGH+VL
Sbjct  274  SGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  339  TRSIAERGRYPAADVLKSVSRALPGCHSEEENLTMGRARALLARYESMEELVRLGAYKAG  398
            +R +AERG+YPA DVL ++SR +P   S+E+    +  R  LA Y+ +E L+R+G Y+ G
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRG  391

Query  399  SDPELDLAIKANEPLENFLRQGKTETTASADAFARLQGIL  438
             D + D AI +   +  FLRQ+K E  ++   + +L+ IL
Sbjct  392  VDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1177) fliI in NC_006155


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (939),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 166/359 (47%), Positives = 242/359 (68%), Gaps = 12/359 (3%)

Query  99   TTSGTSASKQSIPSKQSFASKQLPLGPELLGRVLDGSAKPLDGLPAPETGYRAPLITPPI  158
            +T+G   ++Q ++ ++     Q+P+G  LLGRV+DG ++PLDG   PE   +     PP 
Sbjct  72   STAGLHCGQQVMALRRR---HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP-  127

Query  159  NPLQRTAIVQVLDVGVRTINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVG  218
             ++ R +I Q L  G+R+I+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  219  LIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHV  278
            LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  279  LLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGVSGGGSITAFYT  338
            +L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYT
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYT  305

Query  339  VLTEGDDQQDPIADSARAILDGHVVLSRRLAESGHYPAIDIEASISRAMTSLIDDDHYSR  398
            VL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++SR    +  ++H   
Sbjct  306  VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL  365

Query  399  VRQFKQLLASYQRNRDLVSVGAYAAGSDPLLDKAIALYPQMEAFLQQGMFERSSFDDAC  457
               +++ LA YQ    L+ +G Y  G D   DKAI  YP++ +FL+Q+       D+ C
Sbjct  366  AAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK------DEVC  418

1178) fliI in NC_009719


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (938),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 174/376 (47%), Positives = 258/376 (69%), Gaps = 6/376 (1%)

Query  48   RAGEEVICEVVGFRDNKALCLPFGALAGIGVGCKAVLSSEEPHVYP-SSAWLGRVVNAMG  106
            ++GEE+  EVVG+ ++KAL  PF + AG+  G + V++    H  P + A LGRV+++ G
Sbjct  49   KPGEELA-EVVGINGSKALLSPFTSTAGLHCG-QQVMALRRRHQVPVGEALLGRVIDGFG  106

Query  107  EPMDGKGPIAQGAQPYLLRNMPPPAHTRQRVRGKIDLGVRALNTFTTCCRGQRMGIFAGS  166
             P+DG+       + Y    MPPPA  RQ +   +  G+RA+++ +TC  GQR+GIF+++
Sbjct  107  RPLDGRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  167  GVGKSVLLSMLARNTACDVSVIGLIGERGREVQEFIEDDLGPEGLARSVVVVATSDEPAL  226
            GVGKS LL+ML      D +V+ LIGERGREV+EFI+  L+ E   R V+VVATSD PAL
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  227  MRRQAAYLTLSLAEYFRDRDQNVLCMMDSVTRFAVAQREIGLSTGEPPTSKGYTPTVFAE  286
             R +A +++ ++AE+FRD ++ V+ + DS+TR+A A REI+L++GE + S  Y P VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  287  LPKLLERAGPGTGSGNITGLFTVLVDGDDHNEPVADAVRSILDGHIVMERSIAERGRYPA  346
            LP+LLER+G G   G+IT+++TVLV+GDD NEP+AD VRS+LDGHIV+ R +AERG+YPA
Sbjct  285  LPRLLERTGMG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  347  INVLKSVSRTMPDCNEAEENELIRRARALMATYDDMEELIRLGAYRPGSDPQVDEAIFYQ  406
            I+VL ++SR  P     E+ +L    R  +A Y+++E LIR+G Y+ G D + D AI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  407  PALEAFLAQNKHDASS  422
            P + +FL Q+K++  +
Sbjct  404  PDICTFLRQSKDEVCG  419

1179) fliI in NC_014121


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (939),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 185/429 (44%), Positives = 277/429 (65%), Gaps = 18/429 (4%)

Query  12   LDRVEEKLTQVPDFRQYGKLTRATGLVMEAVGLKLP---IGALCIVERQTEQGIIPVESE  68
            ++R+  K     ++ + G++   ++ +++A    LP   +G LC +    E +      E
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNA---WLPGVFMGELCCIKPGEELA------E  56

Query  69   VVGFNGQTLFLMPLEHVDGILPGARIYALQSDSHAGKQLPVGPHLLGRVLDAQGRPLDGR  128
            VVG+NG   +L P+    G+  G ++ AL+       Q+PVG  LLGRV+D+ GRPLDGR
Sbjct  57   VVGINGSKALLSPFTSTAGLHCGQQVMALRRR----HQVPVGEALLGRVIDGFGRPLDGR  112

Query  129  PAPGKPAAGLFTPTLNPLHRDPIKNVLDVGVRAINGLLTVGRGQRMGLFAGSGVGKSVLL  188
              P     +  +    ++ R+PI + L  G+RAI+++ T G GQR+G+F+++GVGKS LL
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  189  GMMARFTTADVIVVGLIGERGREVKDFIENILGEQGLaravvvaapadvSPILRMQGAVY  248
            +M+     AD  V+ LIGERGREV++FI+  L+E+   R V+V A +D +++ R+++   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  249  ATRIAEDFRERGLNVLLIMDSLTRYAMAQREVALAIGEPPATKGYPPSVFARLPALVERT  308
            AT IAE FR+ G  V+L+ DSLTRYA A RE+ALA GE + +  YPP+VF+ LP L+ERT
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  309  GNGVKGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASI  368
            G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++
Sbjct  293  GMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  369  SRAMTELIPHAQYRKVQRFKQLLSAYQRNRDLVSVGAYVKGSDAMLDQAIDKYPSLEAFL  428
            SR    + +H + +    +++ L+ YQ    L+ +G Y +G D+  D+AID YP + +FL
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  429  HQAIHERSG  437
            +Q+ +E  G
Sbjct  411  RQSKDEVCG  419

1180) fliI in NC_017731


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (938),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 180/413 (44%), Positives = 268/413 (65%), Gaps = 14/413 (3%)

Query  27   RYGRLTKITGLVMEAEGIKMPLGATCFVERAINDRHDEVVCEVVGFNGPRMLLMPLADLE  86
            R GR+  +++ +++A    + +G  C +      + +E + EVVG+NG++ LL P++   
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI------KPGEELAEVVGINGSKALLSPFTSTA  74

Query  87   GIAPGARVYAQTNGDDGQTSRLLPLGDELLGRILDAQGTPLDGKGPLDAKQRAPLITPPI  146
            G+  G +V A    ++      +P+G+ LLGR++D+ G PLDG+  L    +    + P 
Sbjct  75   GLHCGQQVMALRRRHQ------VPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPP  127

Query  147  NPLERTPIHSVLDVGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARFTQADIIVVG  206
             ++ R PI   L  G+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  207  LIGERGREVKDFIENILGAEGLKRavvvaapadvSPLLRMQGASYATRIAEYFRDLGKNV  266
            LIGERGREV++FI+  L+ E  KR V+V A +D ++L R+++   AT IAE+FRD GK V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  267  LLIMDSLTRYSMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGKNGGSITAFYTV  326
            +L+ DSLTRY+ A REIALA GE + +  YPP+VF+ LP L+ER+G G + GSITAFYTV
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTV  306

Query  327  LTEGDDQQDPIADSARAILDGHIVLSRSLAESGHYPAIDIEASISRAMTELIDKQHYRQI  386
            L EGDD ++P+AD  R++LDGHIVLSR LAE GHYPAID+ A++SR    +   +H +  
Sbjct  307  LVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLA  366

Query  387  QRFKQLTSSYQRNRDLINVGAYATGSDPLLDMAIQYYPRMSKFLQQDIDERCD  439
              +++  + YQ    LI +G Y  G D   D AI+ YP +  FL+Q  DE C+
Sbjct  367  AILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

1181) Thivi_0361 in NC_018012


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (939),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 176/416 (43%), Positives = 281/416 (68%), Gaps = 13/416 (3%)

Query  33   KTPDPQPEGRLSRMVGMTLEAEGIRLPVGGRAAIHTVNGTQLAAEVVGFQGERTFLMPEG  92
            K P P+   R +R+ +++      +LP    + +  ++  +  AEVVG++G +++L P  
Sbjct  12   KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFT  71

Query  93   KLEGLIPGARIEPLEQSRRIPVGPELLGRVIDAlgrpldgggplrTQELVPL-----EGR  147
               GL  G ++ +L + +++PVG  LLGRVID++GRPLD       +EL  +     ++ 
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD------GRELPEVCWKDYDAM  125

Query  148  PINPLTRAPVRQPLDVGIRTLNGLLSVGRGQRLGLFAGSGVGKSVLLGMMTKHTEADVIV  207
            P  ++ R P+ QPL  GIR+++++ + G GQR+G+F+++GVGKS LL+M+ +  +AD  V
Sbjct  126  PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV  185

Query  208  VGLIGERGREVNEFIQDILDDESRRRTVVVAVPADQSPLLRQHGAWVSTTVAEYFRDRGL  267
            + LIGERGREV EFI+  L +E+R+R V+V   +D+++L R ++  V+TT+AE+FRD G 
Sbjct  186  LVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGK  245

Query  268  NVLLLMDSLTRFAQGAREIAMAIGEPPATKGYSASVFARLPQLVERAGNGDHGGGSITAF  327
             V+LL DSLTR+A++AREIA+A GE + +  Y+++VF+ LP+L+ER+G G+   GSITAF
Sbjct  246  RVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAF  303

Query  328  YTVLAEGDDQNDPIVDSARAILDGHVVLSREIAESGRYPAIDvsasvsrvmsavvTPEHQ  387
            YTVL EGDD N+P+ D  R++LDGH+VLSR +AE G+YPAIDV A++SRV + V + EH+
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  388  RAAYRFRSLMSTYARNRDLIAVGAYRKGSDPQLDEAVAMNPRLESYLGQNRTEAAS  443
            + A  +R  ++ Y     LI +G Y++G D + D A+   P + ++L Q++ E  +
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

1182) fliI in NC_008800


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (938),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 181/424 (43%), Positives = 270/424 (64%), Gaps = 15/424 (3%)

Query  1    MDKFEERISQSTTIRRYGRLTRATGLVLEATGLQLPLGATCLIERHDNGevqevesevvG  60
            M+++  + + +    R GR+   ++ +L+A    + +G  C I   ++       +EVVG
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE------LAEVVG  59

Query  61   FNGQRLFLMPLEEVEGIVPGARVYARITTGGASASKQLPLGPELLGRVLDGSAKPLDGLP  120
            +NG + +L P+    G+  G +V A           Q+P+G  LLGRV+DG ++PLDG  
Sbjct  60   INGSKALLSPFTSTAGLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRPLDGRE  113

Query  121  APETGYRAPLITPPINPLQRTAIEQVLDVGVRTINALLTVGRGQRMGLFAGSGVGKSVLL  180
             PE   +     PP  ++ R +I Q L  G+R+I+++ T G GQR+G+F+++GVGKS LL
Sbjct  114  LPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  181  GMMARYTQADVIVVGLIGERGREVKDFIENILGPEGRARSVVIAAPADVSPLLRMQGAAY  240
            +M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  241  ATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERA  300
            AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  301  GNGVSGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRRLAESGHYPAIDIEASI  360
            G G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++
Sbjct  293  GMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  361  SRAMTSLIDENHYSKVRQFKQLLASFQRNRDLVSVGAYAAGSDPLLDKAIALYPQMEIFL  420
            SR    +  ++H      +++ LA +Q    L+ +G Y  G D   DKAI  YP++  FL
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  421  QQGM  424
            +Q+ 
Sbjct  411  RQSK  414

1183) fliI in NC_010634


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (938),  Expect = 7e-68, Method: Compositional matrix adjust.
 Identities = 163/339 (49%), Positives = 231/339 (69%), Gaps = 9/339 (2%)

Query  125  KQLPLGPELLGRVLDGSAKPLDGLPAPETGYRAPLITPPINPLQRTAIVQVLDVGVRTIN  184
             Q+P+G  LLGRV+DG ++PLDG   PE   +     PP  ++ R +I Q L  G+R+I+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAID  147

Query  185  ALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAE  244
            ++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  245  GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA  304
             R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  305  IGEPPATKGYPPSVFAKLPALVERAGNGVSGGGSITAFYTVLTEGDDQQDPIADSARAIL  364
             GE + +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  365  DGHVVLSRRLAESGHYPAIDIEASISRAMTSLIDDDHYSRVRQFKQLLASYQRNRDLVSV  424
            DGH+VLSRRLAE GHYPAID+ A++SR    +  ++H      +++ LA YQ    L+ +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  425  GAYAAGSDPLLDKAIALYPQMEAFLQQGMFERSSFDDAC  463
            G Y  G D   DKAI  YP++ +FL+Q+       D+ C
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSK------DEVC  418

1184) fliI in NC_009832


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (938),  Expect = 7e-68, Method: Compositional matrix adjust.
 Identities = 170/363 (47%), Positives = 244/363 (68%), Gaps = 9/363 (2%)

Query  72   FNGQRLFLMPLEEVEGIVPGARVYARVSPEGQSASKQLPLGPALLGRVLDGSAKPLDGLP  131
            +NG + +L P+    G+  G +V A           Q+P+G ALLGRV+DG ++PLDG  
Sbjct  60   INGSKALLSPFTSTAGLHCGQQVMA------LRRRHQVPVGEALLGRVIDGFGRPLDGRE  113

Query  132  APETGYRAPLITAPFNPLQRTPIEQVLDVGVRTINGLLTVGRGQRMGLFAGSGVGKSVLL  191
             PE   +    + P  ++ R PI Q L  G+R+I+++ T G GQR+G+F+++GVGKS LL
Sbjct  114  LPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  192  GMMARYTQADVIVVGLIGERGREVKDFIENILGPEGRARSVVIAAPADVSPLLRMQGAAY  251
            +M+    +AD  V+ LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  252  ATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERA  311
            AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  312  GNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRRLAEAGHYPAIDIEASI  371
            G G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSRRLAE GHYPAID+ A++
Sbjct  293  GMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  372  SRAMTSLIDEEHYRRVRNFKQMLASYQRNRDLISVGAYVSGSDPLLDKAMALYPQMEAYL  431
            SR    +  +EH +    +++ LA YQ    LI +G Y  G D   DKA+  YP++ ++L
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  432  QQG  434
            +Q+
Sbjct  411  RQS  413

1185) fliI in NC_005090


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (937),  Expect = 7e-68, Method: Compositional matrix adjust.
 Identities = 162/347 (47%), Positives = 245/347 (71%), Gaps = 7/347 (2%)

Query  75   EGSKVGDRVYLNNRGLQIPVGAGLLGRVVDPLGRPIDGAG--EILGTEYAPIIKPPIAAM  132
             G   G++V    R  Q+PVG +LLGRV+D +GRP+DG    E+   +Y ++   P +AM
Sbjct  74   AGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAM  130

Query  133  KRGMIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGASAPIKVIALIG  192
             R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +++ A  +V+ LIG
Sbjct  131  VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG  190

Query  193  ERGREVPEFIEKNLGGNLEN-TVLVVATSDDSPLMRKYGAFSAMSVAEYFKARGEDVLFM  251
            ERGREV EFI+  L+ +  +  V+VVATSD ++L R  + F A ++AE+F+  G  V+++
Sbjct  191  ERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLL  250

Query  252  MDSVTRFAMAQREIGLALGEPPTSKGYPPSVLTLLPQLMERAGKEEGHGSITAFFTVLVE  311
             DS+TR+A A REI+LA GE + S  YPP+V++ LP+L+ER+G  E  GSITAF+TVLVE
Sbjct  251  ADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGSITAFYTVLVE  309

Query  312  GDDMGDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRLMNDVSTKDHVLAARKF  371
            GDDM +P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SR+   V++ +H   A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  372  RRLYSLLKENEVLIRIGAYQKGNDRELDEAIEKKERMEGYLKQNFDE  418
            RR  +L +E E+LIRIG YQ+G D + D AI+    +  +L+Q+ DE
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1186) fliI in NC_022362


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (936),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 177/420 (43%), Positives = 275/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEAT--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   E    
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1187) fliI in NC_022352


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (936),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 177/420 (43%), Positives = 275/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEAT--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   E    
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1188) fliI in NC_022351


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (936),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 177/420 (43%), Positives = 275/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEAT--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   E    
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1189) fliI in NC_022353


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (936),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 177/420 (43%), Positives = 275/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEAT--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   E    
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1190) M635_05305 in NC_021834


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (936),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 177/420 (43%), Positives = 275/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEAT--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   E    
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1191) flil in NC_017279


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (936),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 177/420 (43%), Positives = 275/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEAT--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   E    
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1192) fliI in NC_002163


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (936),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 177/420 (43%), Positives = 275/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEAT--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   E    
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1193) fliI in NC_018521


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (936),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 177/420 (43%), Positives = 275/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEAT--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   E    
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1194) fliI in NC_018709


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  251 bits (936),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 177/420 (43%), Positives = 275/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEAT--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   E    
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMSD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV + 
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAISKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1195) fliI in NC_020516


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  250 bits (935),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 169/341 (50%), Positives = 237/341 (70%), Gaps = 19/341 (5%)

Query  117  RAKHLPVGDKLLGRVVdgagrpldglgpldgTEGRSLQS---RPFNPLS-----RAPIDT  168
            R  ++PVG+ LLGRV+DG GRPL         +GR L     + +++++     R PI  
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPL---------DGRELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  169  PLDVGIRAINALLTVGRGQRLGLFAGSGVGKSVLIGMMARYTAADVIVVGLIGERGREVK  228
            PL  GIRAI+++ T G GQR+G+F+++GVGKS L++M+     AD  V+ LIGERGREV+
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  229  EFIEQNLGAEGRQRSVVVAAPADTSPLMRLQGAAYATTIAEYFRDQGKQVLLIMDSLTRY  288
            EFI+  L+ E R+R V+V A +D ++L R+++   ATTIAE+FRD+GK+V+L+ DSLTRY
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  289  AMAQREIALAIGEPPVTRGYPPSVFARLPALVERAGNGLEGGGSITAFYTVLAEGDDQQD  348
            A A REIALA GE +V+  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNE  315

Query  349  PIADSARAILDGHFVLSRSLADQGHYPAIDIEQSISRAMHGLVSPEHFDLVRRFKQMFSR  408
            P+AD  R++LDGH+VLSR LA++GHYPAID+  ++SR    + S EH +L   +++ ++ 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  409  YQRSRDLIAVGAYQAGSDPMLDKAVAMYPKLEAFLQQRIDE  449
            YQ    LI +G YQ G D   DKA+  YP + +FL+Q  DE
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1196) fliI in NC_014323


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  250 bits (935),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 164/333 (50%), Positives = 229/333 (69%), Gaps = 3/333 (0%)

Query  120  HSRRLPVGEELLGRVLDGAGRPLDNLGPLHTERSAPLAVRAANPLGRAPIRDILDTGIRA  179
            + +++PVGE LLGRV+DG GRPLD    L           ++ ++ R PI + L TGIRA
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRA  145

Query  180  INSMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTSADVIVVGLIGERGREVKEFIEQILG  239
            I+S+ T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+
Sbjct  146  IDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLS  205

Query  240  AEGLARSVVVAAPADTPPLMRLQGAAYCTSIAEYFRDQGKDVLLIMDSLTRYAMAQREIA  299
             E   R V+V A +D P+L R+++    T+IAE+FRD+GK V+L+ DSLTRYA A REIA
Sbjct  206  EETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIA  265

Query  300  LAIGEPPATKGYPPSVFAKLPALVERAGNGDEGGGSITAFYTVLTEGDDQQDPIADAARA  359
            LA GE + +  YPP+VF+ LP L+ER+G G+   GSITAFYTVL EGDD ++P+AD  R+
Sbjct  266  LAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRS  323

Query  360  ILDGHIVLNRQLAEAGHYPAIDIEQSISRAMHSITDAEHQRSSRHLKQLYSRFQRNRDLI  419
            +LDGHIVL+R+LAE GHYPAID+  ++SR    +T  EH++ +  L++  + +Q    LI
Sbjct  324  LLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLI  383

Query  420  SVGAYAAGSDPILDEAIALLPRMEAFLQQGIHE  452
             +G Y  G D   D AI   P + +FL+Q+ +E
Sbjct  384  RIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1197) Afer_0140 in NC_013124


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  250 bits (935),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 179/371 (49%), Positives = 268/371 (73%), Gaps = 5/371 (1%)

Query  54   VAEVVGFEGERLVCMPLREVRGVRYGDRAVALRRATQIPVGRALLGRVIDADGVPIDGQG  113
            +AEVVG++G + +  P+    G++ G++ +ALRR  Q+PVG ALLGRVID+ G P+DG+ 
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-  112

Query  114  PVEPDDVV--GLELAAPMPMERTLIDEQLGLGVRVLDTMVPCGVGQRLGVFAGAGVGKSS  171
              E  +V   + +  +P +M R  I + L  G+R +D++  CG GQR+G+F+++GVGKS+
Sbjct  113  --ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  172  LLSMvvrgadvdvrvvalvgERGREVREFLEHDLGPEGMARSVVVVATSDEPPLvrvraa  231
            LL+M+  ++D D  V+ L+GERGREVREF++  L+ E   R V+VVATSD P+L RVRA 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  232  iaatriaEWFRASGARVLLVMDSLTRLALAQRELGLSAGEPPSVRGYPPSVFRLMAQLLE  291
            + AT IAE FR +G RV+L+ DSLTR A A RE++L+AGE +    YPP+VF  +++LLE
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  292  RAGTDHVGSITGIYSVLVEGDDLDDPIADAARSVLDGHIVLSRQLANRGRYPAVDVLASL  351
            R+G ++ GSIT++Y+VLVEGDD+++P+AD  RS+LDGHIVLSR+LA+RG+YPA+DVLA+L
Sbjct  291  RTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  352  SRLESSILPDDRRRLMQAARRHLAVLDEVRDLVDLGAYQAGTSMEVDEALEVVPRIETVF  411
            SR+ + + ++++R+L    RR+LA+ +EV  L+ +G YQ G   + D A++  P I T +
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  412  GQDISERSDPN  422
             Q   E  +P+
Sbjct  411  RQSKDEVCGPE  421

1198) fliI in NC_009708


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  250 bits (935),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 163/339 (49%), Positives = 230/339 (68%), Gaps = 9/339 (2%)

Query  125  KQLPLGPELLGRVLDGSAKPLDGLPAPETGYRAPLITPPINPLQRTAIVQVLDVGVRTIN  184
             Q+P+G  LLGRV+DG ++PLDG   PE   +     PP  ++ R +I Q L  G+R+I+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAID  147

Query  185  ALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAE  244
            ++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  245  GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA  304
             R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  305  IGEPPATKGYPPSVFAKLPALVERAGNGVSGGGSITAFYTVLTEGDDQQDPIADSARAIL  364
             GE + +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  365  DGHVVLSRRLAESGHYPAIDIEASISRAMTSLIDDDHYSRVRQFKQLLASYQRNRDLVSV  424
            DGH+VLSRRLAE GHYPAID+ A++SR    +  ++H      +++ LA YQ    L+ +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  425  GAYAAGSDPLLDKAIALYPQMEIFLQQGMFERSSFDDAC  463
            G Y  G D   DKAI  YP++  FL+Q+       D+ C
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSK------DEVC  418

1199) KKY_2417 in NC_016078


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  250 bits (935),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 168/373 (46%), Positives = 260/373 (70%), Gaps = 5/373 (1%)

Query  48   QTGSNLACEIIGFRDGLALCLPFGPVGGVRLGCKAVFAGHDGAVYPDEAWLGRVLNAEAA  107
            + G +LA E++G+ ++ AL  PF + +G++ G + +   +   V  +EA LGRV+++ + 
Sbjct  49   KPGEELA-EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGR  107

Query  108  PIDGGAPLIRGRAPYALRNLPLPAHERGRVGRPIDLGVRCLNTFTTCCDGQRMGIFAGSG  167
            P+DG       +  Y    +P PA  R  + +P+  G+R +++ +TC +GQR+GIF+++G
Sbjct  108  PLDGRELPEVCWKDYD--AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  168  VGKSVLMSMLARNTDVDISIIGLIGERGREVQEFITEQLGEEGMKKAIVVVATSDESALM  227
            VGKS L++ML    D D +++ LIGERGREV+EFI   L+EE  K+ ++VVATSD +AL 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  228  RRQAAYLTLTLAEYFRDQGKRVLCMMDSLTRFAMAQREIGLATGEPPTAKGYPPTVFTEL  287
            R +A +++ T+AE+FRD+GKRV+ + DSLTR+A A REI+LA+GE + +  YPP VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  288  PRLLERAGPGLVNSGSVTGLFTVLVEGDDHNEPIADAVRGILDGHIVMERSIAERGRYPA  347
            PRLLER+G G  + GS+T+++TVLVEGDD NEP+AD VR++LDGHIV+ R +AERG+YPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  348  VNVLRSVSRTMPGCVPEDFRPTLSRARELMSVYADMEELIRLGAYRKGSDPKVDRAIALN  407
            ++VL ++SR  P   +++ R   +  R  +++Y ++E LIR+G Y++G D   D+AI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  408  PALEAFLSQRSDE  420
            P + +FL Q  DE
Sbjct  404  PDICTFLRQSKDE  416

1200) PSTAA_0179 in NC_017532


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  250 bits (935),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 180/418 (44%), Positives = 270/418 (65%), Gaps = 10/418 (2%)

Query  26   GRLVRVSGMLLESLGCQRMTGQRCYVEQGDGSMLEAQVVGFNRDITYLMPFKKPVGLTAG  85
            GR+  VS+ LL++       G+ C +  G+     A+VVG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  86   SRVFPAPDDAKLHIDESWLGRVVNGLGEPLD--ELGKLGGRDPLPTELPSVNPLKRKPVS  143
             +V +     ++ ++E+ LGRV++G+G PLD  EL  +  +D    +  +  ++ R+P++
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD---YDAMPPPAMVRQPIT  136

Query  144  EALDVGVRAINATLTLGKGQRVGLFAGSGVGKSVLLGMITRQTKADVVVVGLIGERGREV  203
            ++L  G+RAI++  T G GQRVG+F+++GVGKS LL+M+     AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  204  QEFLLHSLGEEGLKKAVVVVAPANESPLMRLKATELCHSIAAYFRDQGHDVLLLVDSLTR  263
            +EF+  +L+EE  K+ V+VVA ++ ++L R++A  +  +IA +FRD+G  V+LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  264  YAMAQREIALALGEPPATKGYPPSVFGMLPELVESAGNGASDNGSLSAIYTVLAEGDDQQ  323
            YA A REIALA GE + +  YPP+VF+ LP L+E +G G  ++GS++A+YTVL EGDD +
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMN  314

Query  324  DPIVDCARAILDGHIVLSRRLAEAGHYPAIDVCASVSRCMSQVGQPAHLGAARQLKECYS  383
            +P+ D  R++LDGHIVLSRRLAE GHYPAIDV A++SR  + V    H   A  L+   +
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  384  TFEKIKELIPLGGYTPGADIKTDRAVQLAPTIERFLRQDVGEAAELETSVATLQNILG  441
             ++ +  LI +G Y  G D  TD+A++  P I  FLRQ  +E    E  +  L++IL 
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1201) Psest_4169 in NC_019936


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  250 bits (935),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 180/418 (44%), Positives = 270/418 (65%), Gaps = 10/418 (2%)

Query  26   GRLVRVSGMLLESLGCQRMTGQRCYVEQGDGSMLEAQVVGFNRDITYLMPFKKPVGLTAG  85
            GR+  VS+ LL++       G+ C +  G+     A+VVG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  86   SRVFPAPDDAKLHIDESWLGRVVNGLGEPLD--ELGKLGGRDPLPTELPSVNPLKRKPVS  143
             +V +     ++ ++E+ LGRV++G+G PLD  EL  +  +D    +  +  ++ R+P++
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD---YDAMPPPAMVRQPIT  136

Query  144  EALDVGVRAINATLTLGKGQRVGLFAGSGVGKSVLLGMITRQTKADVVVVGLIGERGREV  203
            ++L  G+RAI++  T G GQRVG+F+++GVGKS LL+M+     AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  204  QEFLLHSLGEEGLKKAVVVVAPANESPLMRLKATELCHSIAAYFRDQGHDVLLLVDSLTR  263
            +EF+  +L+EE  K+ V+VVA ++ ++L R++A  +  +IA +FRD+G  V+LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  264  YAMAQREIALALGEPPATKGYPPSVFGMLPELVESAGNGASDNGSLSAIYTVLAEGDDQQ  323
            YA A REIALA GE + +  YPP+VF+ LP L+E +G G  ++GS++A+YTVL EGDD +
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMN  314

Query  324  DPIVDCARAILDGHIVLSRRLAEAGHYPAIDVCASVSRCMSQVGQPAHLGAARQLKECYS  383
            +P+ D  R++LDGHIVLSRRLAE GHYPAIDV A++SR  + V    H   A  L+   +
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  384  TFEKIKELIPLGGYTPGADIKTDRAVQLAPTIERFLRQDVGEAAELETSVATLQNILG  441
             ++ +  LI +G Y  G D  TD+A++  P I  FLRQ  +E    E  +  L++IL 
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1202) fliI in NC_009075


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  250 bits (933),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 170/396 (43%), Positives = 262/396 (67%), Gaps = 7/396 (1%)

Query  41   GERCVIESADGDRIDAQVVGFNREETFLMPFKKPVGLVAGAQVLSCERQGLLRIGRSWLG  100
            GE C I +++     A+VVG+N   ++L PF    GL  G QV++  R+  + +G + LG
Sbjct  43   GELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  101  RIVNGLGEAIDGRGPLGGDAVLRAHPA-PVNPLRKRPVRDVLDVGVRAINGLLTLGRGQR  159
            R+++G+G ++DGR     +   +   A P  ++ ++P+ + L  G+RAI+++ T G GQR
Sbjct  100  RVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  160  IGLMAGSGVGKSMLLGMITRATQADVVVVGLIGERGREVREFVDHALGEAGLAKSVLVAA  219
            +G+ +++GVGKS LL+M+  A +AD  V+ LIGERGREVREF+D +L+E    + V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  220  PADESPLMRLKAAELCHAIAAHFRDTGANVLLLVDSLTRYAMAQREIALSVGEPPATRGY  279
             +D ++L R++A  +  +IA  FRD G  V+LL DSLTRYA A REIAL+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  280  PPSVFGMLPQLVETAGNGEGAGSMSAIYTVLAEGDDQNDPVVDTARAILDGHIVLTRELA  339
            PP+VF+ LP+L+E +G GE  GS++A+YTVL EGDD N+P+ D  R++LDGHIVL+R LA
Sbjct  278  PPGVFSALPRLLERTGMGE-KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  340  ERGHYPAIDVPRSVSRCMSQVAGAEHGALARKVKEMIGRHEQIRDLIALGGYVQGADPAT  399
            ERGHYPAIDV  ++SR  + V++ EH  LA  ++  ++  +++  LI +G Y +G D  T
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  400  DEAVAKAARIDTFLRQDMLDVARHDATLAALKELIA  435
            D A+   + I TFLRQ   +V   +  +  L ++++
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1203) BDL_5986 in NC_021877


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  250 bits (933),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 170/396 (43%), Positives = 262/396 (67%), Gaps = 7/396 (1%)

Query  41   GERCVIESADGDRIDAQVVGFNREETFLMPFKKPVGLVAGAQVLSCERQGLLRIGRSWLG  100
            GE C I +++     A+VVG+N   ++L PF    GL  G QV++  R+  + +G + LG
Sbjct  43   GELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  101  RIVNGLGEAIDGRGSLGGDAVLRAHPA-PVNPLRKRPVRDVLDVGVRAINGLLTLGRGQR  159
            R+++G+G ++DGR     +   +   A P  ++ ++P+ + L  G+RAI+++ T G GQR
Sbjct  100  RVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  160  IGLMAGSGVGKSMLLGMITRATQADVVVVGLIGERGREVREFVDHALGEAGLAKSVLVAA  219
            +G+ +++GVGKS LL+M+  A +AD  V+ LIGERGREVREF+D +L+E    + V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  220  PADESPLMRLKAAELCHAIAAHFRDTGANVLLLVDSLTRYAMAQREIALSVGEPPATRGY  279
             +D ++L R++A  +  +IA  FRD G  V+LL DSLTRYA A REIAL+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  280  PPSVFGMLPQLVETAGNGEGAGSMSAIYTVLAEGDDQNDPVVDTARAILDGHIVLTRELA  339
            PP+VF+ LP+L+E +G GE  GS++A+YTVL EGDD N+P+ D  R++LDGHIVL+R LA
Sbjct  278  PPGVFSALPRLLERTGMGE-KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  340  ERGHYPAIDVPRSVSRCMSQVAGAEHGALARKVKEMIGRHEQIRDLIALGGYVQGADPAT  399
            ERGHYPAIDV  ++SR  + V++ EH  LA  ++  ++  +++  LI +G Y +G D  T
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  400  DEAVAKAARIDTFLRQDMLDVARHDATLAALKELIA  435
            D A+   + I TFLRQ   +V   +  +  L ++++
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1204) fliI in NC_021659


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  250 bits (933),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 162/328 (50%), Positives = 230/328 (71%), Gaps = 3/328 (0%)

Query  107  KQLPLGPALLGRVLDGSAKPLDGLPAPETGYRAPLITAPFNPLQRTPIEQVLDVGVRTIN  166
             Q+P+G ALLGRV+DG ++PLDG   PE   +    + P  ++ R PI Q L  G+R+I+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAID  147

Query  167  GLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGTE  226
            ++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  227  GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA  286
             R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  287  IGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAIL  346
             GE + +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  347  DGHVVLSRRLAEAGHYPAIDIEASISRAMTSLIDEEHYRRVRNFKQMLASYQRNRDLISV  406
            DGH+VLSRRLAE GHYPAID+ A++SR    +  +EH +    +++ LA YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  407  GAYVAGSDPLLDKAMTLYPQMEAYLQQG  434
            G Y  G D   DKA+  YP++ ++L+Q+
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1205) Vapar_4171 in NC_012791


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  250 bits (933),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 178/393 (46%), Positives = 257/393 (66%), Gaps = 20/393 (5%)

Query  79   AEVVGFAGDRLFLMPQSEVAGLLPGARVFARPGPAQFAGGASGDAHTKRLPVGEGMLGRV  138
            AEVVG+ G + +L P +  AGL  G +V A               +  ++PVGE++LGRV
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALR-------------RRHQVPVGEALLGRV  101

Query  139  VDAAGRPLDGLGPLDVSRRVPLGAPPINPLARAPIDSVLDVGVRAINAMLTVGRGQRMGL  198
            +D+ GRPLDG    +V ++   +A P  ++ R PI   L  G+RAI+++ T G GQR+G+
Sbjct  102  IDGFGRPLDGRELPEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGI  160

Query  199  FAGSGVGKSVLLGMMARYTSAEVIVVGLIGERGREVKDFIENTLGEEGLARSVVVAAPAD  258
            F+++GVGKS LL+M+     A+  V+ LIGERGREV++FI+ TL+EE   R V+V A +D
Sbjct  161  FSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSD  220

Query  259  NSPLLRLQGAAYATCLAEYFRDQGRDVLLIMDSLTRYAMAQREIALAVGEPPATKGYPPS  318
             ++L R+++   AT +AE+FRD+G+ V+L+ DSLTRYA A REIALA GE + +  YPP+
Sbjct  221  RPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPG  280

Query  319  VFAKLPALVEragngardangrggSITAFYTVLSEGDDQQDPIADSARAILDGHVVLSRT  378
            VF+ LP L+E      R + G  GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR 
Sbjct  281  VFSALPRLLE------RTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  379  LAEAGHYPAIDIEASISRAMTALIEPSQFDTVRRFKQALSRYQRNRDLISVGAYAAGHDP  438
            LAE GHYPAID+ A++SR    +    + +    +++ L+ YQ    LI +G Y  G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  439  QLDQAIALYPRIEAFLQQSMHERCDYAASIERM  471
            + D+AI  YP I +FL+QS +E C+    IE++
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

1206) fliI in NC_010530


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  250 bits (933),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 183/411 (45%), Positives = 261/411 (64%), Gaps = 19/411 (4%)

Query  79   AGQFTTDSNAPRTAE--AEVVGFGADRLYLMPQSDVVGLLPGARVYPLEPSPQPAGISAP  136
            +G F  +    + +E  AEVVG+ + +  L P +   GL  G +V +L    Q       
Sbjct  38   PGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQ-------  90

Query  137  REPGSKRLPVGAGLLGRVLDAAGRPLDGLGPLAAAMEVPLAGEQINPLMRAPIETVLDTG  196
                   +PVG +LLGRV+D+ GRPLDG   L+        +    +++R PI   L TG
Sbjct  91   -------VPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTG  142

Query  197  VRAINGMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTSADVIVVGLIGERGREVKEFIEN  256
            +RAI+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+ 
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDF  202

Query  257  ILGPEGRRRSVVVAAPADCSPLLRMQGAAYATRLAEYFRDQGQHVLLIMDSLTRYAMAQR  316
             L+ E R+R V+V A +D ++L R+++   AT +AE+FRD+G++V+L+ DSLTRYA A R
Sbjct  203  TLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAR  262

Query  317  EIALAIGEPPATKGYPPSVFAKLPTLVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADS  376
            EIALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+AD 
Sbjct  263  EIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADE  320

Query  377  ARAILDGHIVLSRSLAEAGHYPAIDVEASISRAMTALIPHEQFGSVRRFKQLMSRYQRNR  436
             R++LDGHIVLSR LAE GHYPAIDV A++SR    + +HE+      +++ ++ YQ   
Sbjct  321  VRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVE  380

Query  437  DLISVGAYVPGNDPELDLAIQLHPRMEAFLQQDIHERAGYADAIAALHSLF  487
             LI +G Y  G D + D AI+  P + +FL+Q  +E  G    I  LH ++
Sbjct  381  LLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1207) fliI in NC_022347


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  250 bits (933),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 177/420 (43%), Positives = 274/420 (66%), Gaps = 12/420 (2%)

Query  3    LEKLRSKLGKENLSAVFGEITKISATSIEIRGLKTGVGDIIKLVSNENENLNTLAMVVEI  62
            +++LR K    +     G I  +SAT ++ +     +G++  + + E+     LA VV I
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEE-----LAEVVGI  60

Query  63   KEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGRVVDPFMRPKDGKGAIEAT--  120
            +   + LSPF+   G+  G++        Q+ V++ LLGRV+D F RP DG+   E    
Sbjct  61   NGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWK  120

Query  121  KYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQKLGIFAGSGVGKSTLMGMIVK  180
             Y ++   P  AM R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ +
Sbjct  121  DYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN  177

Query  181  NSKAPIKVVALIGERGREIPEFIQKNLGGKLDD-TVIIVATSDDSALMRKYGAFCAMSVA  239
             + A  +V+ LIGERGRE+ EFI+  L+       VI+VATSD +AL R  + F A ++A
Sbjct  178  APDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIA  237

Query  240  EYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLPQLMERTGKEEG  299
            E+F+++GK V+++ DS+TR+A A REI+LA GE + +  YPP+V+S LP+L+ERTG  E 
Sbjct  238  EFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-  296

Query  300  KGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINIQNSASRVMGD  359
            KG+ITAF+TVLV+GDDM++P+AD+ RS+LDGHIVLSR L++ G YP+I++  + SRV   
Sbjct  297  KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPV  356

Query  360  IISPEHKLWARKFKRLNSLLKENEVLLRIGAYQKGSDKELDEAIAKKEFMQKFLGQNPEE  419
            + S EH+  A  ++R  +L +E E+L+RIG YQ+G D + D AI     +  FL Q+ +E
Sbjct  357  VTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1208) PMI2692 in NC_010554


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  250 bits (933),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 176/419 (43%), Positives = 278/419 (67%), Gaps = 21/419 (5%)

Query  17   IQGNILEVMLRDVFIGEVCQLKENIFSENILGEAIVIGFHNNIAILSMMGSAQGYSLQII  76
            + + +L+  L +VF+GE+C +K    + + L+E  V+G++ + A+LS   S+ G      
Sbjct  28   VSATLLNAWLPGVFMGELCCIK----PGEELAE--VVGINGSKALLSPFTSTAGLHCGQQ  81

Query  77   VEPTGKTFSVALGPHILGSMIDSKGNCLLRFNTEIAEKTFSTLC--PIEGRPPLFSDRLP  134
            V +  +   V++G  +LG +ID+       F   +  + ++ +C    ++ PP    R P
Sbjct  82   VMALRRRHQVPVGEALLGRVIDG-------FGRPLDGRELPEVCWKDYDAMPPPAMVRQP  134

Query  135  ITTLFKSGIRAIDGLLSCGLGQRMGIFASAGTGKTMLMNMIIRFAQADVFVIGLIGERGR  194
            IT  + +GIRAID++ +CG GQR+GIF+++G GK+ L+ M+   ++AD  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  195  EVTEFIE-ELKQ--HKRCENTVLICSTSEQSAVERCNAALVATTVAEYFRQQGKNVVLFI  251
            EV EFI+  L +  +KRC   V++ +TS+++A+ER  A +VATT+AE+FR++GK VVL+ 
Sbjct  195  EVREFIDFTLSEETRKRC---VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  252  DSMTRYCRALRDIALTAGELPVRKGYPASVFDKLPAILERPGVTKTGSITAFYTVLLESD  311
            DS+TRY RA R+IAL+AGE +V   YP++VF  LP +LER G+   GSITAFYTVL+E+D
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  312  DEPDAIGEEIRSILDGHIYLSRKIAASGHYPAIDVLGSVSRVFQQVTDSKQQKSALKIRQ  371
            D  +++++E+RS+LDGHI LSR++A  GHYPAIDVL+++SRVF  VT   +++ A  +R+
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  372  ILMRLQDVKLLQELGEYHEGDNELNDIAVRKQAKIESFLTQSFKEKADFQQTLEQMYEI  430
             L   Q+V LL  +GEY+ G +   D A+   + I +FL QS  E  + +  +E++ +I
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1209) fliI in NC_014532


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  249 bits (931),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 176/373 (48%), Positives = 254/373 (69%), Gaps = 9/373 (2%)

Query  76   AEVVGFAGDRLFLMPLAGISGLMPGARVHPLAENSTDAARRFPLGDSLLGRVVdgngdpl  135
            AEVVG+ G + +L P+++ +GL  G +V +L        ++ P+G++LLGRV+DG G PL
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRR-----HQVPVGEALLGRVIDGFGRPL  109

Query  136  ddlgplEEAPRAPLAQPPFNPLARAPIDTQIDVGIRAINALLSVGRGQRMGLFAGSGVGK  195
            D+    E   +   A PP  ++ R PI   +  GIRAI+++ + G GQR+G+F+++GVGK
Sbjct  110  DGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGK  168

Query  196  SVLLGMMARYTRADVIVVGLIGERGREVQDFIDNILGAHGRERAVVVAAPADTSPLQRLQ  255
            S LL+M+     AD  V+ LIGERGREV++FID  L+ + R R V+V A +D ++L+R++
Sbjct  169  STLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR  228

Query  256  GASYATRIAEGFRDQGHDVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPNL  315
            +   AT IAE FRD+G  V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L
Sbjct  229  ALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRL  288

Query  316  VERAGNAERGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRTLAEAGHYPAIDI  375
            +ER+G +E+  GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GHYPAID+
Sbjct  289  LERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDV  346

Query  376  EASISRAMNAVIDDTQRRQAQRFKGLFSRYQRNRDLISVGAYHPGNDERLDEAVRRYPDL  435
             A++SR    V  + +R+ A  ++  ++ YQ    LI +G Y+ G D   D A+  YPD+
Sbjct  347  LATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDI  406

Query  436  EAFLQQDIDE-CA  447
             +FL+Q  DE C+
Sbjct  407  CTFLRQSKDEVCG  419

1210) MU9_1799 in NC_020418


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  249 bits (931),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 179/427 (42%), Positives = 274/427 (65%), Gaps = 14/427 (3%)

Query  27   HYGRLTKITGLVMEAEGIKMPLGATCFIERVINGNTEEVICEVVGFNGPRMLLMPLAELE  86
            + GR+  +++ +++A    + +G  C I      +  E + EVVG+NG++ LL P++   
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCI------KPGEELAEVVGINGSKALLSPFTSTA  74

Query  87   GIAPGARVYAQSTGSGGQTSRQLPLGDELLGRILDASGNPLDGKGPLEAKIRAPLITPPI  146
            G+  G +V A       +  +Q+P+G+ LLGR++D+ G PLDG+  L    +    + P 
Sbjct  75   GLHCGQQVMAL------RRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPP  127

Query  147  NPLERSPINSVLDVGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARFTQADIIVVG  206
             ++ R PI   L  G+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  207  LIGERGREVKDFIENILGAEGLQRavvvaapadvSPLLRMQGASYATRIAEYYRDLGRNV  266
            LIGERGREV++FI+  L+ E  +R V+V A +D ++L R+++   AT IAE++RD G+ V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  267  LLIMDSLTRYSMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGKNGGSVTAFYTV  326
            +L+ DSLTRY+ A REIALA GE + +  YPP+VF+ LP L+ER+G G + GS+TAFYTV
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTV  306

Query  327  LTEGDDQQDPIADSARAILDGHIVLSRSLAESGHYPAIDIEASISRAMTELIEKSHYRKI  386
            L EGDD ++P+AD  R++LDGHIVLSR LAE GHYPAID+ A++SR    +    H +  
Sbjct  307  LVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLA  366

Query  387  QRFKQLTSAYQRNRDLINVGAYAAGSDPMLDEAIQLFPYMAKFLQQDIDERCDYPAACEQ  446
              +++  + YQ    LI +G Y  G D   D AI+ +P +  FL+Q  DE C+     E+
Sbjct  367  AILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEK  426

Query  447  LSQVIPD  453
            L Q++ +
Sbjct  427  LHQILTE  433

1211) SerAS12_3034 in NC_015566


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  249 bits (930),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 162/328 (50%), Positives = 230/328 (71%), Gaps = 3/328 (0%)

Query  107  KQLPLGPALLGRVLDGSAKPLDGLPAPETGYRAPLITAPFNPLQRTPIEQVLDVGVRTIN  166
             Q+P+G ALLGRV+DG ++PLDG   PE   +    + P  ++ R PI Q L  G+R+I+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAID  147

Query  167  GLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGTE  226
            ++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  227  GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA  286
             R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  287  IGEPPATKGYPPSVFAKLPALVERAGNGINGGGSITAFYTVLTEGDDQQDPIADSARAIL  346
             GE + +  YPP+VF+ LP L+ER+G G +  GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  347  DGHVVLSRRLAEAGHYPAIDIEASISRAMTSLIDEEHYRRVRNFKQMLASYQRNRDLISV  406
            DGH+VLSRRLAE GHYPAID+ A++SR    +  +EH +    +++ LA YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  407  GAYVAGSDPLLDKAMTLYPQMEDYLQQG  434
            G Y  G D   DKA+  YP++  +L+Q+
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1212) SerAS13_3036 in NC_017573


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  249 bits (930),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 162/328 (50%), Positives = 230/328 (71%), Gaps = 3/328 (0%)

Query  107  KQLPLGPALLGRVLDGSAKPLDGLPAPETGYRAPLITAPFNPLQRTPIEQVLDVGVRTIN  166
             Q+P+G ALLGRV+DG ++PLDG   PE   +    + P  ++ R PI Q L  G+R+I+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAID  147

Query  167  GLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGTE  226
            ++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  227  GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA  286
             R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  287  IGEPPATKGYPPSVFAKLPALVERAGNGINGGGSITAFYTVLTEGDDQQDPIADSARAIL  346
             GE + +  YPP+VF+ LP L+ER+G G +  GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  347  DGHVVLSRRLAEAGHYPAIDIEASISRAMTSLIDEEHYRRVRNFKQMLASYQRNRDLISV  406
            DGH+VLSRRLAE GHYPAID+ A++SR    +  +EH +    +++ LA YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  407  GAYVAGSDPLLDKAMTLYPQMEDYLQQG  434
            G Y  G D   DKA+  YP++  +L+Q+
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1213) SerAS9_3033 in NC_015567


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  249 bits (930),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 162/328 (50%), Positives = 230/328 (71%), Gaps = 3/328 (0%)

Query  107  KQLPLGPALLGRVLDGSAKPLDGLPAPETGYRAPLITAPFNPLQRTPIEQVLDVGVRTIN  166
             Q+P+G ALLGRV+DG ++PLDG   PE   +    + P  ++ R PI Q L  G+R+I+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAID  147

Query  167  GLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGTE  226
            ++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  227  GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA  286
             R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  287  IGEPPATKGYPPSVFAKLPALVERAGNGINGGGSITAFYTVLTEGDDQQDPIADSARAIL  346
             GE + +  YPP+VF+ LP L+ER+G G +  GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  347  DGHVVLSRRLAEAGHYPAIDIEASISRAMTSLIDEEHYRRVRNFKQMLASYQRNRDLISV  406
            DGH+VLSRRLAE GHYPAID+ A++SR    +  +EH +    +++ LA YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  407  GAYVAGSDPLLDKAMTLYPQMEDYLQQG  434
            G Y  G D   DKA+  YP++  +L+Q+
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1214) fliI in NC_010465


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  249 bits (930),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 162/339 (48%), Positives = 231/339 (69%), Gaps = 9/339 (2%)

Query  125  KQLPLGPELLGRVLDGSAKPLDGLPAPETGYRAPLITPPINPLQRTAIVQVLDVGVRTIN  184
             Q+P+G  LLGRV+DG ++PLDG   PE   +     PP  ++ R +I Q L  G+R+I+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAID  147

Query  185  ALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAE  244
            ++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  245  GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA  304
             R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  305  IGEPPATKGYPPSVFAKLPALVERAGNGVSGGGSITAFYTVLTEGDDQQDPIADSARAIL  364
             GE + +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  365  DGHVVLSRRLAESGHYPAIDIEASISRAMTSLIDDDHYSRVRQFKQLFASYQRNRDLVSV  424
            DGH+VLSRRLAE GHYPAID+ A++SR    +  ++H      +++ +A YQ    L+ +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  425  GAYAAGSDPLLDKAIALYPQMEAFLQQGMFERSSFDDAC  463
            G Y  G D   DKAI  YP++ +FL+Q+       D+ C
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSK------DEVC  418

1215) fliI in NC_008314


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  249 bits (930),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 184/417 (45%), Positives = 263/417 (64%), Gaps = 31/417 (7%)

Query  72   AGQFTTDSNAPRTAE--AEVVGFGADRLYLMPQSDVVGLLPGARVYPLEPSPQPAGITTP  129
            +G F  +    + +E  AEVVG+ + +  L P +   GL  G +V +L    Q       
Sbjct  38   PGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQ-------  90

Query  130  REPGSKRLPVGAGLLGRVLDAAGRPLDG--LGPIT----AAMEVPLAGEQINPLMRAPIE  183
                   +PVG +LLGRV+D+ GRPLDG  L  +      AM  P       +++R PI 
Sbjct  91   -------VPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPP-------AMVRQPIT  136

Query  184  TVLDTGVRAINGMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTSADVIVVGLIGERGREV  243
              L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  244  KEFIENILGPEGRARSVVVAAPADTSPLLRMQGAAYATRLAEYFRDQGQHVLLIMDSLTR  303
            +EFI+  L+ E R R V+V A +D ++L R+++   AT +AE+FRD+G++V+L+ DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  304  YAMAQREIALAIGEPPATKGYPPSVFAKLPTLVERTGNGPEGGGSITAFYTVLTEGDDQQ  363
            YA A REIALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD +
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMN  314

Query  364  DPIADSARAILDGHIVLSRSLAESGHYPAIDVEASISRAMTALIPDEQFGSVRRFKQLMS  423
            +P+AD  R++LDGHIVLSR LAE GHYPAIDV A++SR    + ++E+      +++ ++
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  424  RYQRNRDLISVGAYVPGNDPELDLAMRLHPRMEAFLQQDIHERAGYDDAIAQLHSLF  480
             YQ    LI +G Y  G D + D A+   P + +FL+Q  +E  G +  I +LH ++
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1216) fliI in NC_022247


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  249 bits (928),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 177/393 (46%), Positives = 257/393 (66%), Gaps = 20/393 (5%)

Query  79   AEVVGFAGDRLFLMPQSEVAGLLPGARVFARpgpaqsagggsgDAHTKRLPVGEGMLGRV  138
            AEVVG+ G + +L P +  AGL  G +V A               +  ++PVGE++LGRV
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALR-------------RRHQVPVGEALLGRV  101

Query  139  VDAAGRPLDGLGPLDVSRRVPLGAPPINPLARAPIDSVLDVGVRAINAMLTVGRGQRMGL  198
            +D+ GRPLDG    +V ++   +A P  ++ R PI   L  G+RAI+++ T G GQR+G+
Sbjct  102  IDGFGRPLDGRELPEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGI  160

Query  199  FAGSGVGKSVLLGMMARYTSAEVIVVGLIGERGREVKDFIENTLGEEGLARSVVVAAPAD  258
            F+++GVGKS LL+M+     A+  V+ LIGERGREV++FI+ TL+EE   R V+V A +D
Sbjct  161  FSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSD  220

Query  259  NSPLMRLQGAAYATCLAEYFRDQGRGVLLIMDSLTRYAMAQREIALAVGEPPATKGYPPS  318
             ++L R+++   AT +AE+FRD+G+ V+L+ DSLTRYA A REIALA GE + +  YPP+
Sbjct  221  RPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPG  280

Query  319  VFAKLPALVEragngardangrggSITAFYTVLSEGDDQQDPIADSARAILDGHVVLSRT  378
            VF+ LP L+E      R + G  GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR 
Sbjct  281  VFSALPRLLE------RTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  379  LAEAGHYPAIDIEASISRAMTALIEPSQFDTVRRFKQALSRYQRNRDLISVGAYAAGHDP  438
            LAE GHYPAID+ A++SR    +    + +    +++ L+ YQ    LI +G Y  G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  439  QLDQAIALYPRIEAFLQQPMHERCDYAASIERM  471
            + D+AI  YP I +FL+Q+ +E C+    IE++
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

1217) Acid345_1649 in NC_008009


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  248 bits (927),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 189/421 (45%), Positives = 293/421 (70%), Gaps = 12/421 (2%)

Query  1    MHESLLSPF---FAAVEGASTLRWHGRVTKVVGNLIESEGPLSSLGDSCEVISSKGDVYP  57
            M + L+  +   +++ +G    RW GR+  V + L+++  P   +G+ C  I +  ++  
Sbjct  1    MKNELMQRLRLKYPPPDGYC--RW-GRIQDVSATLLNAWLPGVFMGELC-CIKPGEEL--  54

Query  58   GEIVGFRDNAVLSMTLQPPKGIRFGDSVVGLAQPPSIAVGDEILGRVLDATGAPLDGIT-  116
            +E+VG+ ++  L   + +  G++ G+ V++L +   ++VG+ +LGRV+D+ G PLDG   
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  117  PARPRGSRPVDGSAPLPYARIPVREVMPCGIRAIDGFVTCGRGQRIGIFGGSGVGKSTLI  176
            P   +  +  D+ +P +  R P+ + +  GIRAID+  TCG GQR+GIF+++GVGKSTL+
Sbjct  115  PEVCW--KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  177  GMLTRGSAADVTVLALIgergrevrefveeSIGEEGMQRAVVIVSTSDQSPLLRLRaama  236
            +ML  ++ AD  VL LIGERGREVREF++ +++EE  +R V++V+TSD+++L R+RA   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  237  atavaehfaaEGKHVLLVLDSLTRFGMAQREIGLAAGEPPTAKGYTPSVFTLLARLVERA  296
            AT++AE F  +GK+V+L+ DSLTR++ A REI+LAAGE + +  Y P+VF+ L+RL+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  297  GNFERGSITGFYTVLMEGDDLQDPLVDAVRSLLDGHIVLDRKLASDGHYPPIQILESLSR  356
            G  E+GSIT+FYTVL+EGDD+++PL D VRSLLDGHIVL R+LA  GHYP+I++L +LSR
Sbjct  293  GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  357  LASAVCSVQHLQASRKLRAWLASYVRSEDLIRIGAYQRGGDPVLDQAVSAMPEIRKLLIQ  416
            + + V S +H Q +  LR +LA Y   E LIRIG YQRG D   D+A+ + P+I  +L Q
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  417  G  417
            +
Sbjct  413  S  413

1218) CKO_02894 in NC_009792


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  248 bits (927),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 167/380 (44%), Positives = 251/380 (67%), Gaps = 5/380 (1%)

Query  42   VGQMCHVESVDQEMMDAQVVGFDRDVTYLMPFKHPSGLIAGARVFPAGKTEGVMIGDQWL  101
            +G++C + + ++    A+VVG++   + L PF   +GL  G +V +  + + V +G+  L
Sbjct  42   MGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  102  GRVVNGLGEPLDNKGKLGGDTLLAQQLPQVHPLKRQPVHAPLDVGVRAINGLLTIGKGQR  161
            GRV++G+G PLD +  L        +     ++ RQP+  PL  G+RAI+++ T G GQR
Sbjct  99   GRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  162  VGLMAGSGVGKSVLLGMITRYTRAEVVVVGLIGERGREVKEFIENALQAEGLAKSVIVAA  221
            VG+ +++GVGKS LL+M+     A+  V+ LIGERGREV+EFI+ +L  E   + VIV A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  222  PADESPLMRIKATELCHTIASYYRDKGKDVLLLVDSLTRYAMAQREIALSLGEPPATKGY  281
             +D ++L R++A  +  TIA ++RD+GK V+LL DSLTRYA A REIAL+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  282  PPSAFGMIPRLVESAGNSESEGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSRHLA  341
            PP+ F+ +PRL+E +G +E  GS+TA+YTVL EGDD ++P+ D  R++LDGHIVLSR+LA
Sbjct  278  PPGVFSALPRLLERTGMGEK-GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  342  EAGHYPAIDVGQSISRCMSQVTEREHQLAARTLKQLYAEYQSIKPLIPLGGYVAGADPLA  401
            E GHYPAIDV  ++SR  + VT +EH+  A  L++  A YQ +  LI +G Y  G D  +
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  402  DRAVRLSPAINQFLQQEVQD  421
            D+A+   P I  FL+Q  ++
Sbjct  397  DKAIDTYPDICTFLRQSKDE  416

1219) fliI in NC_021505


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  248 bits (927),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 184/419 (44%), Positives = 282/419 (68%), Gaps = 21/419 (5%)

Query  20   LNGPLLEAALHNVVIGEVCEVRSNWRHAAVSARAQVIGFSPDAVLLSLLGDARGLSRESL  79
            +++ LL+A L  V +GE+C +++          A+V+G++    LLS +  + GL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  80   IVPTGALLSLHCSAAMLGSVIDPQGRIVERLAPGDAFDGRD----C--PVDAAPPAYNQR  133
            +++      +  + A+LG VID  GR         ++DGR+    C    DA PP+   R
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGR---------PLDGRELPEVCWKDYDAMPPPAMVR  132

Query  134  RPVSQPMATGVRAIDGLLTCGIGQRIGIFAAAGSGKTSLMNMLIAHSEADVFVIGLIGER  193
            +P++QP+ TG+RAID++ TCG GQR+GIF+A+G GK++L+ ML   ++AD  V+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  194  GREVTEFVETLRHSDKCTRCVVVYATSDFSSIDRCNAALQATAIAEYFRDQGRQVVLMLD  253
            GREV EF++     +   RCV+V ATSD ++++R  A + AT+IAE+FRD+G++VVL+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  254  SMSryararrdlalaaGEAPARRGYPASVFDSLPRLLERPGVTANGSITAFYTVLTESDD  313
            S++RYARA R++ALAAGE++    YP++VF +LPRLLER G+  +GSITAFYTVL E+DD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDD  312

Query  314  ETDPIAEEIRSILDGHIYLSRKLAASGHFPAIDVLRSASRVAHQVTGADVQQLAASTRKV  373
              +P+A+E+RS+LDGHI LSR+LA  GH+PAIDVL + SRV   VT+ + +QLAA  R+ 
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  374  LARLEALQVLLDLGEYRHGENAANDQAMACRDALMAWLCQDLKEGCAPQATLESLHGLL  432
            LA  + +++L+ +GEY++G ++  D+A+     + + L Q   E C+P+  +E LH +L
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1220) fliI in NC_013956


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  248 bits (926),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 182/409 (45%), Positives = 260/409 (64%), Gaps = 17/409 (4%)

Query  37   RYGRLTRATGLVLEATGLQLPLGSTCVIERNDGKSISEIESEVVGFNGQKLLMMPLEEVD  96
            R GR+   ++ +L+A    + +G  C I   +  +      EVVG+NG K L+ P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA------EVVGINGSKALLSPFTSTA  74

Query  97   GILPGARVYA-RATGENPqagkqlllgpqllgrvlDGSGRPLDGLPSPETGYRAALNTPP  155
            G+  G +V A R   + P +   L           DG GRPLDG   PE   +     PP
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVI-------DGFGRPLDGRELPEVCWKDYDAMPP  127

Query  156  FNPLQRTPITDVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVV  215
              ++ R PIT+ L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  216  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRLQGAAYATRIAEDFRDRGKH  275
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD GK+
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  276  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIDGGGSITAFY  335
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  336  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTSLIDENHYA  395
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    +  ++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  396  RVRQFKQLLSSFQRNRDLVSVGAYAAGSDPMLDKAIQLYPQMEAFLQQG  444
                +++ L+ +Q    L+ +G Y  G D   DKAI+ YP++ +FL+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1221) fliI in NC_017531


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  248 bits (925),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 182/409 (45%), Positives = 260/409 (64%), Gaps = 17/409 (4%)

Query  27   RYGRLTRATGLVLEATGLQLPLGSTCVIERNDGKSISEIESEVVGFNGQKLLMMPLEEVD  86
            R GR+   ++ +L+A    + +G  C I   +  +      EVVG+NG K L+ P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA------EVVGINGSKALLSPFTSTA  74

Query  87   GILPGARVYA-RATGENPqagkqlllgpqllgrvlDGSGRPLDGLPSPETGYRAALNTPP  145
            G+  G +V A R   + P +   L           DG GRPLDG   PE   +     PP
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVI-------DGFGRPLDGRELPEVCWKDYDAMPP  127

Query  146  FNPLQRTPITDVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVV  205
              ++ R PIT+ L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  206  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRLQGAAYATRIAEDFRDRGKH  265
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD GK+
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  266  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIDGGGSITAFY  325
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  326  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTSLIDENHYA  385
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    +  ++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  386  RVRQFKQLLSSFQRNRDLVSVGAYAAGSDPMLDKAIQLYPQMEAFLQQG  434
                +++ L+ +Q    L+ +G Y  G D   DKAI+ YP++ +FL+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1222) PAGR_g1743 in NC_017554


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  248 bits (925),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 182/409 (45%), Positives = 260/409 (64%), Gaps = 17/409 (4%)

Query  27   RYGRLTRATGLVLEATGLQLPLGSTCVIERNDGKSISEIESEVVGFNGQKLLMMPLEEVD  86
            R GR+   ++ +L+A    + +G  C I   +  +      EVVG+NG K L+ P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA------EVVGINGSKALLSPFTSTA  74

Query  87   GILPGARVYA-RATGENPqagkqlllgpqllgrvlDGSGRPLDGLPSPETGYRAALNTPP  145
            G+  G +V A R   + P +   L           DG GRPLDG   PE   +     PP
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVI-------DGFGRPLDGRELPEVCWKDYDAMPP  127

Query  146  FNPLQRTPITDVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVV  205
              ++ R PIT+ L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  206  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRLQGAAYATRIAEDFRDRGKH  265
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD GK+
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  266  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIDGGGSITAFY  325
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  326  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTSLIDENHYA  385
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    +  ++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  386  RVRQFKQLLSSFQRNRDLVSVGAYAAGSDPMLDKAIQLYPQMEAFLQQG  434
                +++ L+ +Q    L+ +G Y  G D   DKAI+ YP++ +FL+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1223) fliI in NC_016816


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  248 bits (925),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 182/409 (45%), Positives = 260/409 (64%), Gaps = 17/409 (4%)

Query  27   RYGRLTRATGLVLEATGLQLPLGSTCVIERNDGKSISEIESEVVGFNGQKLLMMPLEEVD  86
            R GR+   ++ +L+A    + +G  C I   +  +      EVVG+NG K L+ P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA------EVVGINGSKALLSPFTSTA  74

Query  87   GILPGARVYA-RATGENPqagkqlllgpqllgrvlDGSGRPLDGLPSPETGYRAALNTPP  145
            G+  G +V A R   + P +   L           DG GRPLDG   PE   +     PP
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVI-------DGFGRPLDGRELPEVCWKDYDAMPP  127

Query  146  FNPLQRTPITDVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVV  205
              ++ R PIT+ L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+
Sbjct  128  -PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  206  GLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRLQGAAYATRIAEDFRDRGKH  265
             LIGERGREV++FI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD GK+
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  266  VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIDGGGSITAFY  325
            V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFY
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFY  304

Query  326  TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTSLIDENHYA  385
            TVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    +  ++H  
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  386  RVRQFKQLLSSFQRNRDLVSVGAYAAGSDPMLDKAIQLYPQMEAFLQQG  434
                +++ L+ +Q    L+ +G Y  G D   DKAI+ YP++ +FL+Q+
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1224) fliI in NC_021591


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (923),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 162/328 (50%), Positives = 229/328 (70%), Gaps = 3/328 (0%)

Query  107  KQLPLGPALLGRVLDGSAKPLDGLPAPETGYRAPLITAPFNPLQRTPIEQVLDVGVRTIN  166
             Q+P+G ALLGRV+DG ++PLDG   PE   +    + P  ++ R PI Q L  G+R+I+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAID  147

Query  167  GLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGTE  226
            ++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  227  GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA  286
             R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  287  IGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAIL  346
             GE + +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  347  DGHVVLSRRLAEAGHYPAIDIEASISRAMTSLIDEEHYRRVRNFKQMLASYQRNRDLISV  406
            DGH+VLSRRLAE GHYPAID+ A++SR    +  +EH +    +++ LA YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  407  GAYVAGSDPLLDKAMTLYPLMEAYLQQG  434
            G Y  G D   DKA+  YP + ++L+Q+
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1225) Mmol_0930 in NC_012968


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (923),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 186/387 (49%), Positives = 252/387 (66%), Gaps = 27/387 (6%)

Query  77   AEVVGFDGERMLLMPQSSVDGITPGAKVFALEVAESLPKPHHGQPPRRRATDRARHLPVG  136
            AEVVG++G + LL P +S  G+  G +V AL               RRR     +++PVG
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMAL---------------RRR-----HQVPVG  94

Query  137  ADLLGRVVDGAGNPLD--DLGDIKPSQSSALNARPMNPLMRAPIEEVLDVGVRAINSMLT  194
              LLGRV+DG G PLD  +L ++        +A P  +++R PI + L  G+RAI+S+ T
Sbjct  95   EALLGRVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT  151

Query  195  VGRGQRMGLFAGSGVGKSVLLGMMARYTTADVIVVGLIGERGREVQEFIEQILGPEGLAR  254
             G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ E   R
Sbjct  152  CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKR  211

Query  255  SvvvaapadapaLMRLQGASYATTIAESFRNEGKNVLLIMDSLTRYAMAQREIALAIGEP  314
             V+V A +D PAL R+++   ATTIAE FR++GK V+L+ DSLTRYA A REIALA GE 
Sbjct  212  CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGET  271

Query  315  PATKGYPPSVFAKLPALVERAGNGRRGEGSITAFYTVLTEGDDQQDPIADAARAILDGHI  374
            + +  YPP+VF+ LP L+ER+G G +  GSITAFYTVL EGDD ++P+AD  R++LDGHI
Sbjct  272  AVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  375  VLSRSLAESGHYPAIDVEQSISRAMHNITSPEHQKLARKLKQLNSRYARSVDLINVGAYE  434
            VLSR LAE GHYPAIDV  ++SR    +TS EH++LA  L++  + Y     LI +G Y+
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  435  AGSDAVLDMAISKHELIERLLQQDVAE  461
             G D+  D AI     I  +L+Q   E
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKDE  416

1226) Mfla_1975 in NC_007947


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (922),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 184/388 (48%), Positives = 253/388 (66%), Gaps = 23/388 (5%)

Query  67   AEVVGFDGGRMLLMPQSGVEGVVPGAKVFALEVADALPKPNQAKHPRRRAIDRARHLPVG  126
            AEVVG++G++ LL P ++  G+  G +V AL               RRR     +++PVG
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMAL---------------RRR-----HQVPVG  94

Query  127  EALLGRVIDAAGRPLDELGPLNSEHSVPLNTRPLNPLSRAPIEEVLDVGVRAINSMLTVG  186
            EALLGRVID+ GRPLD    L        ++ P  ++ R PI + L  G+RAI+S+ T G
Sbjct  95   EALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCG  153

Query  187  RGQRMGLFAGSGVGKSVLLGMMARYTTAEVIVVGLIGERGREVKEFIEQILGPEGLarav  246
             GQR+G+F+++GVGKS LL+M+     A+  V+ LIGERGREV+EFI+  L+ E   R V
Sbjct  154  EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCV  213

Query  247  vvaapadvpaLMRLQGASYATAIAEYFRNQGKDVLLIMDSLTRYAMAQREIALAIGEPPA  306
            +V A +D PAL R+++   AT+IAE+FR++GK V+L+ DSLTRYA A REIALA GE + 
Sbjct  214  IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAV  273

Query  307  TKGYPPSVFAKLPALVERAGNGKPGEGSITAFYTVLTEGDDQQDPIADSARAILDGHIVL  366
            +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVL
Sbjct  274  SGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  367  SRSLAESGHYPAIDIEQSISRAMHNITSPEHQKNARKLKQLNSRYTRNQDLINVGAYESG  426
            SR LAE GHYPAID+  ++SR    +TS EH++ A  L++  + Y   + LI +G Y+ G
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRG  391

Query  427  SDPVLDEAIMRHEAIEAFLQQDIKESAS  454
             D   D AI     I +FL+Q   E  +
Sbjct  392  VDTDTDKAIDTYPDICTFLRQSKDEVCG  419

1227) fliI in NC_021499


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (922),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 172/373 (47%), Positives = 255/373 (69%), Gaps = 9/373 (2%)

Query  61   AQVVGFNRDITYLMPFKKPVGLTSGSRVFPARDQALLQIDSSWLGRVVNGLGEPLDG--L  118
            A+VVG+N   + L PF    GL  G +V + R +  + ++ + LGRV++G+G PLDG  L
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  119  GKLAGRDPLPAELPSVNPLRRRPVSEPLDVGVRAINAMLTLGKGQRVGLFAGSGVGKSVL  178
              +  +D     +P+  ++ R+P+++PL  G+RAI+++ T G GQRVG+F+++GVGKS L
Sbjct  115  PEVCWKDY--DAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  179  LGMITRQTKADVVVVGLIGERGREVQEFLLHALGPEGLKKAVVVVAPANESPLMRLKATE  238
            L+M+     AD  V+ LIGERGREV+EF+  +L+ E  K+ V+VVA ++ ++L R++A  
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  239  LCHAIAAYFRDQGNDVLLLVDSLTRYAMAQREIALALGEPPATKGYPPSVFGLLPELVES  298
            +  +IA +FRD+G+ V+LL DSLTRYA A REIALA GE + +  YPP+VF+ LP L+E 
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  299  AGNGENDKGSLSAIYTVLAEGDDQQDPIVDCARAILDGHIVLSRRLADVGHYPAIDIAAS  358
            +G GE  KGS++A+YTVL EGDD ++P+ D  R++LDGHIVLSRRLA+ GHYPAID+ A+
Sbjct  292  TGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  359  VSRCMSQVSQPRHLAAARQLKEFSGTYDKIKELIPLGGYTPGMDMKTDRAVQLAPAIERF  418
            +SR  + V+   H   A  L+   + Y+ +  LI +G Y  G+D  TD+A++  P I  F
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  419  LRQDVGE--GAEL  429
            LRQ  +E  G+EL
Sbjct  410  LRQSKDEVCGPEL  422

1228) fliI in NC_016613


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (923),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 179/399 (45%), Positives = 274/399 (69%), Gaps = 9/399 (2%)

Query  43   IGSLCLVETMSGHMEAEVVGFSGDNLFLMPSEQITGILPGAKVTPLTTDAGLPVGMELLG  102
            +G LC +   +G+  AEVVG++G + +L P    +G+  G +V +L     +PVG  LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  103  RVIDGVGNPLDG--LGPIYTDHRASFNAEPINPLARKPISEPLDVGLKAINGLLTVGKGQ  160
            RVIDG G PLDG  L  +    +  ++A P  ++ R+PI++PL  G++AI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  161  RIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKefieeilgeegrrrsvvva  220
            R+G+F+++GVGKS  L+M+  +  A+  V+ LIGERGREV+EFI+  L+EE R+R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  221  apadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKG  280
            A +D ++L R+++   A TIAE+FRD+G  V+LL DSLTR+A+A REIAL+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  281  YPPSVFAKLPALVERAGNGGADQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSRE  340
            YPP+VF+ LP L+ER+G G  ++GSITAF+TVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  341  MADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAYKPGTDP  400
            +A+ GHYPAIDV  ++SRV P +T++EH  ++  +R+ L++ +  + L+ IG Y+ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  401  AIDSAFTLKPKLDEYLQQRMKESVPYDMCVNMLRSILGG  439
              D A+   P +  +L+Q   E    ++ ++ L+ IL  
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1229) fliI in NC_015723


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (923),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 183/417 (44%), Positives = 261/417 (63%), Gaps = 31/417 (7%)

Query  72   AGQFTTDSNAPRTAE--AEVVGFGADRLYLMPQSDVVGLLPGARVYPLEPSPQPAGITAP  129
            +G F  +    + +E  AEVVG+ + +  L P +   GL  G +V +L    Q       
Sbjct  38   PGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQ-------  90

Query  130  REQGSKRLPVGAGLLGRVLDAAGRPLDG--LGPIT----AAMEVPLAGEQINPLMRAPIE  183
                   +PVG +LLGRV+D+ GRPLDG  L  +      AM  P       +++R PI 
Sbjct  91   -------VPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPP-------AMVRQPIT  136

Query  184  TVLDTGVRAINGMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTSADVIVVGLIGERGREV  243
              L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  244  KEFIENILGPEGRARSVVVAAPADTSPLLRMQGAAYATRLAEYFRDQGQHVLLIMDSLTR  303
            +EFI+  L+ E R R V+V A +D ++L R+++   AT +AE+FRD+G++V+L+ DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  304  YAMAQREIALAIGEPPATKGYPPSVFAKLPTLVERTGNGPEGGGSITAFYTVLTEGDDQQ  363
            YA A REIALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD +
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMN  314

Query  364  DPIADSARAILDGHIVLSRSLAESGHYPAIDVEASISRAMTALIPAAQFGSVRRFKQLMS  423
            +P+AD  R++LDGHIVLSR LAE GHYPAIDV A++SR    + +  +      +++ ++
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  424  RYQRNRDLISVGAYVPGNDPELDLAMRLHPRMEAFLQQDIHERAGYDDAIAQLHSLF  480
             YQ    LI +G Y  G D + D A+   P + +FL+Q  +E  G +  I +LH ++
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1230) SCD_n01230 in NC_022357


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (922),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 191/437 (44%), Positives = 282/437 (65%), Gaps = 43/437 (9%)

Query  23   SPWLLTGRLTRVAGLVMEAVGLRLA---VGGSCTVHLPEGHDVDAEVVGFSGEKLFLMPS  79
              W   GR+  V++ +++A   +L+   +G  C +    G+++ AEVVG++G K +L P 
Sbjct  20   CRW---GRIQDVSATLLNA---WLPGVFMGELCCIK--PGEEL-AEVVGINGSKALLSPF  70

Query  80   TDVYGLVPGARVTPVDTPVQRVSRQGGSPHVRRRSEDRVRQVQVGDELLGRILDGAGRPL  139
            T   GL  G +V ++                RRR     +QV VG+ LLGR++DG GRPL
Sbjct  71   TSTAGLHCGQQVMAL----------------RRR-----HQVPVGEALLGRVIDGFGRPL  109

Query  140  DLLGP-LNLAHHVPLHSRPCNPLSRAPIRQVLDVGVRAINALLTVGRGQRMGLFAGSGIG  198
            D  G  L        ++ P  ++ R PI Q L  G+RAI+++ T G GQR+G+F+++G+G
Sbjct  110  D--GRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  199  KSILLGMMARFTSADVIVVGLIGERGREVKEFIENILGPVGLARSVVVAAPADTPPLLRL  258
            KS LL+M+     AD  V+ LIGERGREV+EFI+  L+     R V+V A +D P+L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  259  HGAAYATSIAEHFRDQGKHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPQ  318
            ++   AT+IAE FRD+GK+V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP+
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  319  LVERAGNGQAGGGSITAFYTVLVEGDDQQDPIADSARAILDGHIVLSRSLSDQGHYPAID  378
            L+ER+G G+   GSITAFYTVLVEGDD ++P+AD  R++LDGHIVLSR L+++GHYPAID
Sbjct  288  LLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  379  IEASVSRAITELLAPE--DLARVRRFKLLYSRFQRSRDLISVGAYVRGSDPLLDEAMALY  436
            + A++SR +  + + E  +LA + R +L  + +Q    LI +G Y RG D   D A+  Y
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRL--ALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  437  PQLEAFLQQDMHQ-CDS  452
            P++ +FL+Q  ++ C++
Sbjct  404  PDICTFLRQSKDEVCGP  420

1231) BB2000_2692 in NC_022000


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (921),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 171/402 (43%), Positives = 266/402 (67%), Gaps = 21/402 (5%)

Query  11   IQGNILEVMLRDVFIGEVCQLKENIFSENILGEAIVIGFHNNIAILSMMGSAQGYSLQII  70
            + + +L+  L +VF+GE+C +K    + + L+E  V+G++ + A+LS   S+ G      
Sbjct  28   VSATLLNAWLPGVFMGELCCIK----PGEELAE--VVGINGSKALLSPFTSTAGLHCGQQ  81

Query  71   VEPTGKTFSVALGPHILGSMIDSKGNCLLRFNTEIAEKTFNTSC--PIEGRPPLFSDRLP  128
            V +  +   V++G  +LG +ID+       F   +  + +   C    ++ PP    R P
Sbjct  82   VMALRRRHQVPVGEALLGRVIDG-------FGRPLDGRELPEVCWKDYDAMPPPAMVRQP  134

Query  129  ITTLFKSGIRAIDGLLSCGLGQRMGIFASAGTGKTMLMNMIIRFAQADVFVIGLIGERGR  188
            IT  + +GIRAID++ +CG GQR+GIF+++G GK+ L+ M+   ++AD  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  189  EVTEFIE-ELKQ--HKRCENTVLICSTSEQSAVERCNAALVATTVAEYFRQQGKNAVLFI  245
            EV EFI+  L +  +KRC   V++ +TS+++A+ER  A +VATT+AE+FR++GK  VL+ 
Sbjct  195  EVREFIDFTLSEETRKRC---VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLA  251

Query  246  DSMTRYCRALRDIALTAGELPVRKGYPASVFDKLPAILERPGVTKTGSITAFYTVLLESD  305
            DS+TRY RA R+IAL+AGE +V   YP++VF  LP +LER G+   GSITAFYTVL+E+D
Sbjct  252  DSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGD  311

Query  306  DEPDAIGEEIRSILDGHIYLSRKIAASGHYPAIDVLGSVSRVFQQVTDSKQQKSALKIRQ  365
            D  +++++E+RS+LDGHI LSR++A  GHYPAIDVL+++SRVF  VT   +++ A  +R+
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  366  ILMRLQDIKLLQELGEYHEGDNELNDIAVRKQAKIESFLTQS  407
             L   Q++ LL  +GEY+ G +   D A+   + I +FL QS
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1232) fliI in NC_017168


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (921),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 170/416 (41%), Positives = 273/416 (66%), Gaps = 14/416 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G PLDG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G  + +G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V + ++ + A++L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  433
             Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1233) fliI in NC_008150


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (921),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 170/416 (41%), Positives = 273/416 (66%), Gaps = 14/416 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G PLDG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G  + +G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V + ++ + A++L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  433
             Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1234) lfiI in NC_017265


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (921),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 170/416 (41%), Positives = 273/416 (66%), Gaps = 14/416 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G PLDG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G  + +G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V + ++ + A++L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  433
             Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1235) fliI in NC_005810


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (921),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 170/416 (41%), Positives = 273/416 (66%), Gaps = 14/416 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G PLDG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G  + +G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V + ++ + A++L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  433
             Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1236) fliI in NC_003143


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (921),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 170/416 (41%), Positives = 273/416 (66%), Gaps = 14/416 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G PLDG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G  + +G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V + ++ + A++L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  433
             Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1237) fliI in NC_017154


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (921),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 170/416 (41%), Positives = 273/416 (66%), Gaps = 14/416 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G PLDG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G  + +G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V + ++ + A++L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  433
             Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1238) fliI in NC_017160


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (921),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 170/416 (41%), Positives = 273/416 (66%), Gaps = 14/416 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G PLDG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G  + +G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V + ++ + A++L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  433
             Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1239) fliI in NC_004088


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (921),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 170/416 (41%), Positives = 273/416 (66%), Gaps = 14/416 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G PLDG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G  + +G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V + ++ + A++L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  433
             Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1240) fliI in NC_008149


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (921),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 170/416 (41%), Positives = 273/416 (66%), Gaps = 14/416 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G PLDG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G  + +G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V + ++ + A++L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  433
             Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1241) fliI in NC_014029


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (921),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 170/416 (41%), Positives = 273/416 (66%), Gaps = 14/416 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G PLDG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G  + +G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V + ++ + A++L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  433
             Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1242) JCM7686_1778 in NC_022041


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (924),  Expect = 8e-67, Method: Compositional matrix adjust.
 Identities = 202/419 (49%), Positives = 288/419 (69%), Gaps = 6/419 (1%)

Query  7    DRLVEQLRARAGRIEAVELNGRVTRILGCVLYAQLPDGRIGEECLLRDPVSRVEITAEII  66
            + L+++LR +    ++    GR+  + + +L A LP+  +GE C     +   E  AE++
Sbjct  3    NELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELC----CIKPGEELAEVV  58

Query  67   GFDGEEAVLAPAGDVRGLSSRTEVIPTRTEPLGPAGPELLGRVVDGFGRALDG-GAPVPG  125
            G++G  A+L+P     GL    +V++ R     P G  LLGRV+DGFGR+LDG   P   
Sbjct  59   GINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC  118

Query  126  RVTLHAEPPLPLDRPVIDRPFITGLRVIDGMLAMGEGQRMGIFGAAGVGKSTLLSQIIRG  185
            +   +A PP ++ R  I +P++TG+R ID++ + GEGQR+GIF+A+GVGKSTLL+ +  +
Sbjct  119  WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNA  178

Query  186  ADADAIVLGLIGERGREVAEFLERDLGPEGRKRAAVFVATSDRPaaerlratlaatacae  245
            +DAD+ VL LIGERGREV EF++  L+ E RKR  + VATSDRPA ER+RA + AT+ AE
Sbjct  179  PDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE  238

Query  246  alraQGKRVLLLIDSMTRVARALREIGLAAGEPPVRRGFPPSVFAALPRLVERPGRTREG  305
             +R +GKRV+LL DS+TR ARA REI+LAAGE +V   +PP+VF+ALPRL+ER G    G
Sbjct  239  FFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKG  298

Query  306  VITAIYTVLVEGdddaadpvadEVRSLLDGHIILSRDLAARGHYPAIDVLRSKSRVMTAV  365
             ITA+YTVLVEG DD  +P+ADEVRSLLDGHI+LSR LA RGHYPAIDVL + SRV   V
Sbjct  299  SITAFYTVLVEG-DDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVV  357

Query  366  aapaqiaqsqriaarlaKLDEIEILVQVGEYRAGSDPLADEALRLRAQTDAFLQQSTGD  424
            ++  +   +  +  RLA  +E+E+L+++GEY+ G D  +D A+   ++  +FL+QS ++
Sbjct  358  TSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1243) PSJM300_00930 in NC_018177


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  247 bits (924),  Expect = 8e-67, Method: Compositional matrix adjust.
 Identities = 175/401 (44%), Positives = 264/401 (66%), Gaps = 14/401 (3%)

Query  26   GRLVRVSGMLLESLGCQRMTGQRCFVEQGDGSMLDAQVVGFNRDITYLMPFKKPVGLTAG  85
            GR+  VS+ LL++       G+ C +  G+     A+VVG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  86   SRVFPAPDDAKLHIDESWLGRVLNGLGEPLD--DLGKLSGRD--PLPAELPSVHPLKRKP  141
             +V +     ++ ++E+ LGRV++G+G PLD  +L  +  +D  ++P+      ++ R+P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP-----PAMVRQP  134

Query  142  VSEPLDVGVRAINATLTLGKGQRVGLFAGSGVGKSVLLGMITRQTKADVVVVGLIGERGR  201
            +++PL  G+RAI++  T G GQRVG+F+++GVGKS LL+M+     AD  V+ LIGERGR
Sbjct  135  ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGR  194

Query  202  EVQEFLLHSLGEEGLKKAVVVVAPANESPLMRLKATELCHSIAGYFRDQGNDVLLLVDSL  261
            EV+EF+  +L+EE  K+ V+VVA ++ ++L R++A  +  +IA +FRD+G+ V+LL DSL
Sbjct  195  EVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSL  254

Query  262  TRYAMAQREIALALGEPPATKGYPPSVFGMLPELVESAGNGANDNGSLSALYTVLAEGDD  321
            TRYA A REIALA GE + +  YPP+VF+ LP L+E +G G  ++GS++A+YTVL EGDD
Sbjct  255  TRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDD  312

Query  322  QQDPIVDCARAILDGHIVLSRRLADAGHYPAIDICASVSRCMSQVGQPSHLGAARQLKEF  381
             ++P+ D  R++LDGHIVLSRRLA+ GHYPAID+ A++SR  + V    H   A  L+  
Sbjct  313  MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR  372

Query  382  YSTYEKIKELIPLGGYSPGADAKTDRAVKLAPSIDRFLRQD  422
             + Y+ +  LI +G Y  G D+ TD+A+   P I  FLRQ 
Sbjct  373  LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1244) fliI in NC_020561


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  246 bits (918),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 164/353 (47%), Positives = 244/353 (70%), Gaps = 6/353 (1%)

Query  71   PFSDPQGIASGARADIAAGQFALRPSTAWLGRMIDGLGRPVDGKGVLLAGAVPRPIKAMP  130
            PF+   G+  G +      +  +  + A LGR+IDG+GRP+DG+   L+    +   AMP
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE--LPEVCWKDYDAMP  126

Query  131  PLASARARVGAKIETGVRALDIFAPLC-LGQRLGLFAGSGVGKSTLLSMLARWTQCDVAV  189
            P A  R  +   + TG+RA+D  A  C  GQR+G+F+++GVGKSTLL+ML    + D  V
Sbjct  127  PPAMVRQPITQPLMTGIRAIDSVAT-CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV  185

Query  190  IGLIGERGREVQEFVEDDLGPDGLARSVVVVATSDEPALMRRQAAWTTLAVAEYFRDQGL  249
            + LIGERGREV+EF++  L+ +   R V+VVATSD PAL R +A   + ++AE+FRD+G 
Sbjct  186  LVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGK  245

Query  250  NVLCLMDSVTRFAMAQREIGLASGEPPATKGYTPTVFAELPRLLERAGPGLAGQGSITGL  309
             V+ L DS+TR+A A REI+LA+GE + +  Y P VF+ LPRLLER+  G++ +GSIT++
Sbjct  246  RVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT--GMGEKGSITAF  303

Query  310  FTVLVDGDDHNEPVADAVRGILDGHVVITRRIAERGRYPAIDVLKSVSRTLPHAHSEEEN  369
            +TVLV+GDD NEP+AD VR++LDGH+V++RR+AERG+YPAIDVL ++SR +P   S+E+ 
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  370  LVRLAARRTLSTYGDMEEMVRLGAYRTGASAEVDQAVLLAPRIEALLNQSKNE  422
             +    RR L+ Y ++E ++R+G Y+ G  ++ D+A+   P I ++L QSK+E
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1245) Tbd_1603 in NC_007404


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  246 bits (920),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 193/428 (46%), Positives = 272/428 (64%), Gaps = 32/428 (7%)

Query  31   GRITRVAGLVMEAVGLKLP---VGSACTVPLPNGSHLEAEVVGFEGERLFLMPQSDVEGI  87
            GRI  V++ +++A    LP   +G  C +    G +L AEVVG++G + +L P +   G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIK--PGEEL-AEVVGINGSKALLSPFTSTAGL  76

Query  88   VPGARVFPVEVIPTLPGLGQVNHPRRRPSDRTRHLPVGEVLLGRVLDSNGRPLDGLGSVH  147
              G +V ++               RRR     +++PVGE LLGRV+D+ GRPLDG   + 
Sbjct  77   HCGQQVMAL---------------RRR-----HQVPVGEALLGRVIDGFGRPLDG-RELP  115

Query  148  TSATAPLNNRAANPLSRAPISEILDVGVRAINSMLTIGRGQRMGLFAGSGVGKSVLLGMM  207
                   +  ++ ++ R PI++ L  G+RAI+S+ T G GQR+G+F+++GVGKS LL+M+
Sbjct  116  EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAML  175

Query  208  ARYTSADVIVVGLIGERGREVKEFIEQILGEEGLaravvvaapaDTPPLMRLQGAAYATA  267
                 AD  V+ LIGERGREV+EFI+  L+EE   R V+V A +D P+L R+++   AT+
Sbjct  176  CNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATT  235

Query  268  IAEHFRDEGKNVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNG  327
            IAE FRD+GK V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G
Sbjct  236  IAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG  295

Query  328  KPGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRDLAESGHYPAIDIEQSISRA  387
                GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR LAE GHYPAID+  ++SR 
Sbjct  296  EK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRV  353

Query  388  MHGITSAAHQQMARRLKKLYSRYARSRDLINVGAYAPGTDPLLDEAIRLQEGIEAFLQQN  447
               +TS  H+Q+A  L++  + Y     LI +G Y  G D   D AI    +I +FL+Q+
Sbjct  354  FPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

Query  448  IPERAGVE  455
              E  G E
Sbjct  414  KDEVCGPE  421

1246) fliI in NC_016002


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  246 bits (918),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 182/426 (43%), Positives = 264/426 (62%), Gaps = 27/426 (6%)

Query  27   STRGKLVRVTGMVMEAVGIKLPVGSACSVALPDGGRVEAEVVGFAGDKVFLMPLTNVQGL  86
              +G++  V++ +++A    + +G  C +     G   AEVVG+ G K +L P+T+  GL
Sbjct  20   CRWGRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGL  76

Query  87   LPGSEVRPLAMQHAPAFGQATVPLSLNGAAGRQVPVGFNLLGRVLDSLGRPLDEKGPLQP  146
              G +V +L  +H                   QVPVG  LLGRV+D++GRPLD +    P
Sbjct  77   HCGQQVMALRRRH-------------------QVPVGEALLGRVIDGFGRPLDGRE--LP  115

Query  147  EAYFPLYSQ-PLNPLERSPVRDVLDVGVRAINGLLTVGRGQRLGLFAGSGVGKSVLLGMM  205
            E     Y   P  ++ R P+ + L  G+RAI+++ T G GQR+G+F+++GVGKS LL+M+
Sbjct  116  EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAML  175

Query  206  ARFTKADIVVVGLIGERGREVKDFIENILGEEGRARSVIVAAPADTPPLMRLHGAAYATA  265
                 AD  V+ LIGERGREV++FI+  L+EE R R VIV A +D P+L R+++   AT+
Sbjct  176  CNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATT  235

Query  266  LAEYYREQGLDVLLLMDSVTRYAMAQREIALAIGEPPVTKGYPPSVFARLPQLIEragna  325
            +AE++R++G  V+LL DS+TRYA A REIALA GE +V+  YPP+VF+ LP+L+E    +
Sbjct  236  IAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE--RTG  293

Query  326  argggaITAFYTVLSEGDDQQDPIADAARAILDGHFVLSRELAEAGHYPAIDIEQSISRV  385
                G+ITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GHYPAID+  ++SRV
Sbjct  294  MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRV  353

Query  386  MVDVVEPRQMDLARRFKQLYSRYQRNRDLISVGAYVAGSDPMLDEAIRRQLPMVGFLTQP  445
               V    + +LA  +++  + YQ    LI +G Y  G D   D AI     +  FL Q+
Sbjct  354  FPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

Query  446  MHESHG  451
             +E  G
Sbjct  414  KDEVCG  419

1247) fliI in NC_009708


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  246 bits (918),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 169/416 (41%), Positives = 274/416 (66%), Gaps = 14/416 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPIDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G P+DG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHSIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G  + +G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGRQQAKAASLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V ++++ + A++L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  433
             Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1248) fliI in NC_017075


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  246 bits (918),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 191/404 (48%), Positives = 273/404 (68%), Gaps = 27/404 (6%)

Query  52   VGSICEIRQPGQPPVLAEVVGFNGDRAFLMPTGDLHGLASGarviprpaprvpprFGVEN  111
            +G +C I+ PG+   LAEVVG+NG +A+L P     GL  G +V++              
Sbjct  42   MGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCGQQVMAL-------------  85

Query  112  HPWRRSEDRGLHLPMGEGLLGRVVDSHGHPLDRGGPIADVHAQPMIRRPINAMDRDPVRQ  171
               RR +    ++P+GE+LLGRV+D+ G+PLD G  +++V  +     P  AM R+P+ Q
Sbjct  86   ---RRRH----QVPVGEALLGRVIDGFGRPLD-GRELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  172  ALDTGVRSINALLTVGRGQRLGLFAGTGVGKSVLLGMMARYTAADVIVVGLIGERGREVK  231
            +L TG+R+I+++ T G GQR+G+F++ GVGKS LL+M+     AD  V+ LIGERGREV+
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  232  EFIEDILGDEGrrrsvvvaapadapplvrMQGASYATAIAEHFRDRGQHVLLLMDSLTRY  291
            EFI+  L++E R+R V+V A +D P+L R+++   AT+IAE FRD G++V+LL DSLTRY
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  292  AMAQREIALAIGEPPATKGYPPSVFAKLPQLVERSGNGLNGVGSITAFYTVLTEGDDPQD  351
            A A REIALA GE + +  YPP+VF+ LP+L+ER+  G+   GSITAFYTVL EGDD ++
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERT--GMGEKGSITAFYTVLVEGDDMNE  315

Query  352  PIADAARGILDGHIVLSRELAESGHYPAIDVERSISRVMTSVAPQEHIVAARKLRQLLAK  411
            P+AD  R++LDGHIVLSR LAE GHYPAIDV  ++SRV   V+++EH   A  LR+ LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  412  YNKARDLIQLGAYAPGHDAELDTAVRLHGQIVALLQQDMRE-CA  454
            Y+    LI++G Y  G D++ D A+    +I ++L+Q   E C+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

1249) fliI in NC_010725


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  246 bits (917),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 171/368 (47%), Positives = 244/368 (67%), Gaps = 10/368 (2%)

Query  70   EVIGFAGDRALAMPFGSLEGVRRGCPALVRD-EAAGAIRPSAAWLGRTVDALGRPIDGLG  128
            EV+G+ G +AL  PF S  G++  C   V        +  + A LGR +D++GRP+DG  
Sbjct  56   EVVGINGSKALLSPFTSTAGLH--CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-R  112

Query  129  PLPQGP-AIYPLRADPPPAHGRRRVGPPLDLGVRCINTFLTMC-RGQRMGIFAGSGVGKS  186
             LP+     Y   A PPPA  R+ +  PL  G+R I++ ++ C  GQR+GIF+++GVGKS
Sbjct  113  ELPEVCWKDYD--AMPPPAMVRQPITQPLMTGIRAIDS-VATCGEGQRVGIFSAPGVGKS  169

Query  187  VLLSMLARYTAADVAVIGLVGERGREVQEFLQDDLGAAGLARSVVVVATSDEPVLMRRNA  246
             LL+ML     AD  V+ L+GERGREV+EF++  L+     R V+VVATSD P L R  A
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  247  AYVTLAIAEYFRDQGAQVLCMIDSITRFAMAQRDIGLAGGEPPTAKGYTPTVFSELPRLL  306
             +V+ +IAE+FRD+G +V+ + DS+TR+A A R+I+LA+GE + +  Y P VFS LPRLL
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  307  ERAGPGVGEGAISGLFTVLVEGDDHNEPVADAVRGILDGHIVMERRIAEQGRYPAINVLR  366
            ER+G G   G+I++++TVLVEGDD NEP+AD VR++LDGHIV+ RR+AE+G+YPAI+VL 
Sbjct  290  ERTGMG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLA  348

Query  367  SVSRTMPRACDPAHLPTVRRARKVLATYADMEELIRLGAYRAGSSPEVDEAVALMPDLTA  426
            ++SR  P      H       R+ LA Y ++E LIR+G Y+ G   + D A+   PD+ +
Sbjct  349  TLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  427  FLGQGKEE  434
            FL Q+K+E
Sbjct  409  FLRQSKDE  416

1250) PSEBR_a2419 in NC_015379


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  246 bits (917),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 186/405 (46%), Positives = 279/405 (69%), Gaps = 9/405 (2%)

Query  21   CRRLGRLSSIQGMVLHATGLDVRLGELVDIHPARGGEVIAAEVVGLRSESTLLMPYGPVD  80
            CR+ GR+  + + +L+A   +V +GEL  I P  G E+  AEVVG+ +  +LL P+ +  
Sbjct  20   CRW-GRIQDVSATLLNAWLPGVFMGELCCIKP--GEEL--AEVVGINGSKALLSPFTSTA  74

Query  81   GL-CLASEVHARGTPYTVPVGASLLGRVLDATCNPLDDLPAPEGLTRKPRFVAPINPLHR  139
            GL C + +V A      VPVG +LLGRV+D+   PLD+   PE + +K     P  ++ R
Sbjct  75   GLHC-GQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE-VCWKDYDAMPPPAMVR  132

Query  140  SPIDTTLLTGVKAVDVFTPLGRGQRIGIFAGSGVGKSTLLGMMSKYADADVIVIALIGER  199
             PI   L+TG++A+D  +  G GQR+GIF+++GVGKSTLL+M+ + +DAD  V+ LIGER
Sbjct  133  QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192

Query  200  GREVGDFIRDSLGPEGLKKavviaaaaeqpavLRRQAAYTATTIAEWFRAQGKHVLLIMD  259
            GREV +FI  +L+ E  K+ V++ A++++PA+ R +A + ATTIAE FR +GK+V+L+ D
Sbjct  193  GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD  252

Query  260  SITRFALAQREIGLSTGEPMGSRGYTPSVFALLPPLMERAGALNGQGSITGVYTVLVEGD  319
            S+TR+A A REI+L++GE   S  Y P+VF+ LP L+ER+G +  +GSIT+ YTVLVEGD
Sbjct  253  SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGD  311

Query  320  DMNEPVADHMRAILDGHIVLSRSVAARGHWPAIDVLHSISRLVGALHTPERKTQVERLRS  379
            DMNEP+AD++R++LDGHIVLSR +A RGH PAIDVL ++SR+   + + E++     LR 
Sbjct  312  DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR  371

Query  380  ALGNYQNSVDLIELGAYEKGSQPLLDTMIDLKPEFDALLQQTPQE  424
             L+ YQ+   LI +G Y++G +   D  ID  P++ ++L+Q+ +E
Sbjct  372  RLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1251) fliI in NC_017956


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  246 bits (917),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 183/423 (44%), Positives = 276/423 (66%), Gaps = 8/423 (1%)

Query  1    MQDLIRSLAGTIEALDSYVVRGRIVAVRGLMAEASGVAARTALGDHVRIRLRDGGRLAAE  60
             ++L++ L     + D+Y  +GRI  V + + +A    +   +G+   I+   G  LA E
Sbjct  2    KNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAW--LPGVFMGELCCIK--PGEELA-E  56

Query  61   VVGFRDGRALLMPFGPLDGVALGAEVEASGGEATIRPSGGWLGRVIDGFGRPIDGKGPLV  120
            VVG+ +++ALL PF +  G+  G +V A      +  + + LGRVIDGFGRP+DG+   +
Sbjct  57   VVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE--L  114

Query  121  pgarprpmrappppaharTRVGAKIDLGVRVLNTFVTCCRGQRLGIFAASGVGKSVLMGM  180
            P    +   A PPPA  R  +   +  G+R +++  TC  GQR+GIF+A+GVGKS L++M
Sbjct  115  PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAM  174

Query  181  IARYTAADVSVVGLIGERGREVQEFIEGALGPEGLARSVVVVATSDEPALMRRQAAYTTL  240
            +     AD +V+ LIGERGREV+EFI+ +L+ E   R V+VVATSD PAL R +A + + 
Sbjct  175  LCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVAT  234

Query  241  AVAEHFRDQGADVLCMIDSITRFAQAQREIGLAAGEPPASKGFTPSVFAELPRLLERAGP  300
            ++AE FRD+G  V+ + DS+TR+A+A REI+LAAGE + S  + P+VF+ LPRLLER+G 
Sbjct  235  TIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM  294

Query  301  GTGQGSITGLFTVLVEGDNHDEPVADATRGILDGHIVLERSIGERGRYPAVNVLRSVSRT  360
            G  +GSIT+++TVLVEGD+ +EP+AD  R++LDGHIVL R ++ERG+YPA++VL ++SR 
Sbjct  295  G-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRV  353

Query  361  MPDCNTPEQNAVVIRARRLLSTYEDMAEMIRLGAYRAGSDPAVDEAIRYHEGLERFLSQG  420
             P   + E+  +    RR L+ Y+++  +IR+G Y+ G D   D AI    ++  FL Q+
Sbjct  354  FPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

Query  421  KAE  423
            K E
Sbjct  414  KDE  416

1252) SAR116_0829 in NC_014010


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  245 bits (916),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 176/386 (46%), Positives = 263/386 (69%), Gaps = 16/386 (4%)

Query  44   IGSICEVKTDNETPAMAEVIGFNNGNNLLSIYDYGARILVGARVSLVDDGAYIPVGEGLL  103
            +G +C +K ++E   +AEV+G+N ++ LLS +   A +  G +V  +     +PVGE+LL
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  104  GRVTDALGVPLDNRPLPPLEGQWPLMGKELNPLQ-----RKPVDKPLDVGVRIINSVLSV  158
            GRV D++G PLD R LP  E  W    K+ +++      R+P+ +PL  G+R I+SV + 
Sbjct  99   GRVIDGFGRPLDGRELP--EVCW----KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATC  152

Query  159  GQGQRVGIIAGSGVGKSVLLGMMSRFTDADIVVVGMIGERGREVGSFVNYILGSEsrdra  218
            G+GQRVGI++++GVGKS LL+M+    DAD  V+ +IGERGREV  F+++ L+ E+R R 
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  219  avvavpadrspLLRIRGAERATAIAEYFRDKGKNVLLIMDSLTRVAHARREIGLALGEQP  278
             +V   +DR++L R+R+   AT+IAE+FRD+GK V+L+ DSLTR A+A REI+LA GE +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  279  TSKGYPPSVVSMIPRLIERSGTGVEGQGSITAIYTVLADGDDANDPVVDTARAILDGHIL  338
             S  YPP+V S +PRL+ER+G G   +GSITA+YTVL +GDD N+P+ D  R++LDGHI+
Sbjct  273  VSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  339  LSRQQAQMGIYPAIDVTTSVSRVMNDITDADQQASAARFRRLVSLYMENRDLILMGGYTP  398
            LSR+ A+ G YPAIDV +++SRV   +T  +++  AA +RR ++LY E   LI +G Y  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  399  GQDPDLDLAVELWPTLTKHIQQPEAE  424
            G D D D A++  P +   ++Q+  E
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDE  416

1253) fliI in NC_020909


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  245 bits (916),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 158/384 (42%), Positives = 261/384 (68%), Gaps = 7/384 (1%)

Query  44   VSVGTVCSVQTADNGHVLGEVIGYSEGRNKLVLYQSGAAVQAGARVSIVDQGTAVDVGDS  103
            V +G +C ++ +++   L+EV+G + ++  L  + S A+++ G +V  + +   V VG++
Sbjct  40   VFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEA  96

Query  104  YLGRVVDALGHPLDDGGPPESQARVPLNGKMLNPLARRMIPGPLDVGVRAVNGLLTIGYG  163
             LGRV+D++G+PLD+   PE   +   ++    ++ R+ I  PL  G+RA++++ T G G
Sbjct  97   LLGRVIDGFGRPLDGRELPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  164  QRIGIIAGSGVGKSVLLGMMARNTVADVVVIGLIGERAREVGEMVRAIMNPETQNKVSIV  223
            QR+GI++++GVGKS LL+M+     AD  V+ LIGER+REV E +   ++ ET+++  IV
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  224  AVPADRSPLLRIRGARRATALAEYFRDQGKNVLLIMDSLTRVAHAQREIGLALGEAPTSK  283
               +DR++L R+R+   AT++AE+FRD+GK V+L+ DSLTR A+A REI+LA GE++ S 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  284  GYPASVVSMIPTLVERAGMGVGPDSGSITGIYTVLADGDDSNDPVVDSARAILDGHIVLS  343
             YP++V S +P L+ER+GMG   + GSIT++YTVL +GDD N+P+ D  R++LDGHIVLS
Sbjct  276  EYPPGVFSALPRLLERTGMG---EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLS  332

Query  344  RSIAQMGIYPAIDIPASISRVMSDIVNLQQQTAAQKFKKLISLYNENRDLMLMGGYVSGQ  403
            R +A+ G YPAID+ A++SRV + + + +++  A  +++ ++LY+E   L+ +G Y  G 
Sbjct  333  RRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGV  392

Query  404  DPDLDLAVTLWPKLVEFIKQSPSE  427
            D D D A+   P +  F++QS  E
Sbjct  393  DTDTDKAIDTYPDICTFLRQSKDE  416

1254) YE105_C3290 in NC_015224


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  245 bits (916),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 170/416 (41%), Positives = 276/416 (67%), Gaps = 14/416 (3%)

Query  24   GRLVRVNGILLESVGCRLA---IGQRCRVESAEDVFIEAQVVGFDREVTYLMPFKQPDGL  80
            GR+  V++ LL++   +L+   +G+ C + ++E++   A+VVG++   + L PF    GL
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   MSGARVFPCELDGELLIGDSWLGRVVNGLGEPIDGKGSLGGETplqqqlpqihplqrqpV  140
              G +V +     ++ +G++ LGRV++G+G P+DG+  L      + +     ++ RQP+
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPI  135

Query  141  STPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSMLLGMMTRYTQADVVVVGLIGERGRE  200
            + PL  G++AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQASGMAKSVVIAAPADESPLMRIKATELCHSVATYYRDKGKDVLLLVDSLT  260
            V+EFI+ +L      + V++ A +D ++L R++A  +  ++A ++RD+GK V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSHGSGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G ++  G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRQLAESGHYPAIDIGQSISRCMSQISPREQIQSARLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + ++++E+ Q A +L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMDIKPLIPLGGYVAGADPMADRAVQYYPAIIDFLRQEVDQ---PSPLPETLAHL  433
             Y ++  LI +G Y  G D  +D+A++ YP I  FLRQ  D+   P  L E L ++
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1255) fliI in NC_006155


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  245 bits (916),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 169/416 (41%), Positives = 273/416 (66%), Gaps = 14/416 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPIDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G P+DG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHSIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G  + +G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V + ++ + A++L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  433
             Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1256) fliI in NC_010634


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  245 bits (916),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 169/416 (41%), Positives = 273/416 (66%), Gaps = 14/416 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPIDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G P+DG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHSIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G  + +G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V + ++ + A++L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  433
             Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1257) fliI in NC_010465


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  245 bits (916),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 169/416 (41%), Positives = 273/416 (66%), Gaps = 14/416 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPIDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G P+DG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ  320
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G  + +G++TA+YTVL EGDD +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN  314

Query  321  DPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYA  380
            +P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V + ++ + A++L++  A
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  381  DYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  433
             Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1258) Bphy_2934 in NC_010622


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  245 bits (916),  Expect = 4e-66, Method: Compositional matrix adjust.
 Identities = 183/391 (47%), Positives = 263/391 (68%), Gaps = 16/391 (4%)

Query  158  AEVVGFHGDKLFLMPTTEVAGLLPGARVYPLETAPIADPMAGAKRLPVGWELLGRVVDAS  217
            AEVVG++G K +L P T  AGL  G +V +L             ++PVG  LLGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRR---------HQVPVGEALLGRVIDGF  105

Query  218  GKPLDG--FGPLNSRNDAPLTAPTINPLHREPIHKVLDVGVRAINSLLTVGRGQRMGLFA  275
            G+PLDG  +  +  ++  ++ +P+   + R+PI + L  G+RAI+S+ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  276  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEEGLarsvvvaapadvs  335
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+EE   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  336  pLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  395
            +L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  396  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRALAEAGH  455
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  456  YPAIDIEASISRAMTALISDAHLDRTRQFKQMLSRYQRNRDLINVGAYSAGRDAVLDKAI  515
            YPAID+ A++SR    + S+ H + +  +++ L+ YQ    LI +G Y  G D+  DKAI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  516  ALYPRMEAFLQQGFRESAGFEASVAHLDSLF  546
              YP + +FL+Q+  E  G E  +  L+ ++
Sbjct  401  DTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1259) Celf_0674 in NC_015514


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  245 bits (915),  Expect = 4e-66, Method: Compositional matrix adjust.
 Identities = 178/382 (47%), Positives = 270/382 (71%), Gaps = 4/382 (1%)

Query  45   GAAVGEL--VRVGDDVLAEVVATAGATARCMPLGPTSGLRAGMPARPLREplrvpvgpgl  102
            G  +GEL  ++ G++ LAEVV+  G+ A   P+ +T+GL+ G    +LR   +VPVG +L
Sbjct  39   GVFMGELCCIKPGEE-LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEAL  97

Query  103  lgrvldglgrpIDGKGPLRARAWVPLDSRAPHPLERARVDEPLDLGVRVLDTLVTVGRGQ  162
            LGRV+DG+GRP+DG+  L    W   D+ +P ++ R  + +PL  G+R +D++ T G GQ
Sbjct  98   LGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  163  RLGLFAGSGVGKSSLLSMVARGTDAEVSVIALVGERGREVREFLEDDLGPEGLARSVVVI  222
            R+G+F+++GVGKS+LL+M+  + DA+ +V+ L+GERGREVREF++  L+ E   R V+V+
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  223  ATSDEPPLVRLRSAFLATRIAEALRDEGRHAVLMMDSLTRVAMAQREIGLSVGEPPATRG  282
            ATSD P+L R+R+ F+AT IAE +RD+G++ VL+ DSLTR A A REI+L+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  283  YPPSTFALLAQLLERAGTGATGSVTGLYTVLVDGDDHNEPIADAARSILDGHVVLDRRLA  342
            YPP+ F+ L++LLER+G G  GS+T++YTVLV+GDD NEP+AD  RS+LDGH+VL RRLA
Sbjct  277  YPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  343  VAGHFPSVDALGSISRVASRVTTPEQrdaarrlravmaarrqaQDLLDVGAYVAGSNPLV  402
              GH+P++D L+++SRV + VT+ E+R+ A  LR  +A  ++ + L+ +G Y  G +   
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  403  DAAVTHGRAIDAFLRQDIEDVV  424
            D A+     I +FLRQ  ++V 
Sbjct  397  DKAIDTYPDICTFLRQSKDEVC  418

1260) fliI in NC_004463


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  245 bits (916),  Expect = 4e-66, Method: Compositional matrix adjust.
 Identities = 179/399 (45%), Positives = 272/399 (69%), Gaps = 13/399 (3%)

Query  46   LGELIGVNSGGKPQIGEVVRIDSEGIIAKPFDRQFAGGLGSVAYRMP---PLSFAPDPSW  102
            +GEL  +++G   +++EVV I++   +  PF    ++GL      M+       + + + 
Sbjct  42   MGELCCIKPGE--ELAEVVGINGSKALLSPFTS--TAGLHCGQQVMALRRRHQVPVGEAL  97

Query  103  KGRVINALGAPLDGQGPLTPGSRAVSAEAEAPSAMKRARVHKPLRTGVRVIDLFAPICAG  162
             GRVI+++G PLDG+  L    +    +A +P+AM R  + +PL TG+R ID  A    G
Sbjct  98   LGRVIDGFGRPLDGRE-LPEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  163  QRVGIFAGSGVGKSTLLAMLARSQGFDTVVLALVGERGREVREFIEDVLGAN-RNRAVTI  221
            QRVGIF+++GVGKSTLLAML  + + D+ VL L+GERGREVREFI+  L+ + R+R V +
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  222  VSTGDESPMMRRLAPKTAMAVAEYFRDRGESVLLVVDSITRFAHAAREVALAAGEPAVAR  281
            V+T+D +++ R  A   A ++AE+FRD G  V+L+ DS+TR+A+AARE+ALAAGE AV+ 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  282  GYAPTVFTDLPRLLERAGPGEEGSGTITGIFSVLVDGDDHNEPIADTIRSTLDGHIVLSR  341
             Y+P VF+ LPRLLER+G GE GS  IT++++VLV+GDD NEP+AD +RS LDGHIVLSR
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGS--ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  342  HIADQARYPAVDVLASVSRLAHNVWDPEERELVSKLRTMIAKYEDTRDLRLMGGYQSGRD  401
            ++A++++YPA+DVLA++SR+   V   E+R+L + LR  +A Y++   L  +G YQ G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  402  SGLDQAIDLVPRIYSAMRQDASAQPSADPFRE-LRDMLK  439
            ++ D+AID  P I + +RQ      +++ + E L+++L 
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1261) Zymop_0590 in NC_015709


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  245 bits (915),  Expect = 4e-66, Method: Compositional matrix adjust.
 Identities = 158/366 (44%), Positives = 258/366 (71%), Gaps = 5/366 (1%)

Query  62   AEVVGFRGQRTLLMALDADAPHNPGARVEPDRQLSVVHVGDGLLGRIIGALGEPLDGLGP  121
            AEVVG+ G ++LL ++ + A  + G +V + R+   V VG++LLGR+I+++G PLDG   
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG--R  112

Query  122  VIADEYWPLVGKMGNP-LNRGRVTQSFDMGVRAINALLTAGIGQRIAIMAGSGVGKSVLM  180
             +++  W   + M  P + R  +TQ++  G+RAI+++ T G GQR++I +++GVGKS L+
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  181  GQMIAGAKADVIVTGLIGERSREVSDFVETKISGEVRPKSIVVAVPADHPPVLRLRAAMR  240
            + +  ++ AD  V  LIGER+REV +F++  +S E R + ++V   +D+P++ R+RA   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  241  ATAIAEYFRAKGKNVLLLIDSLTRIAHAQREVGLSLGEPPTIKGYPPSALGLIPRLVERA  300
            AT+IAE+FR +GK V+LL DSLTR A+A RE++L+ GE +    YPP+ ++ +PRL+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  301  GIDIHSKGAITAIYTVLAdgddpddpivdTARAIVDGHIILSRSLAEQGVFPAIDIGRSL  360
            G++   KG+ITA+YTVL +GDD ++P+ D  R+++DGHI+LSR LAE+G +PAID+  +L
Sbjct  293  GMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  361  SRVMSDIITDKHRQAASHLRRLWSVYEENRDLILMGAYRAGTDPAIDDAINRHADILAFI  420
            SRV + + ++ HRQ A+ LRR  ++Y+E   LI +G Y+ G D   D AI+  +DI +F+
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  421  KQAQNE  426
            +Q+++E
Sbjct  411  RQSKDE  416

1262) invC in NC_012751


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  245 bits (914),  Expect = 4e-66, Method: Compositional matrix adjust.
 Identities = 178/440 (41%), Positives = 305/440 (70%), Gaps = 26/440 (5%)

Query  1    MHKLRLLRYKAHP--------LRLSGPIIEARLFGVKIGEICDIRSDCSESEVICRAQVL  52
            M++LRL +Y +            +S+ +++A+L GV +GE+C I+++    E+   A+V+
Sbjct  6    MQRLRL-KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPG---EEL---AEVV  58

Query  53   GFYNDRSVLSLIGNARGLSRDVVIIPTGAALLVTIDDSLLGSVVDPSGKIVAHLSEPTEI  112
            G+   +++LS + ++ GL  +  +++      V ++++LLG V+D  G+       P + 
Sbjct  59   GINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGR-------PLDG  111

Query  113  MHNPSI--RAIDSPPPSYLHRLSIRDPFITGVKAIDGLITCGVGQRMGIFAAAGCGKTSL  170
             + P +  +  D+ PP+ + R +I +P++TG++AID++ TCG GQR+GIF+A+G GK++L
Sbjct  112  RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  171  MHMLIEQADADVFVIGLVGERGREVTEFTE-VLSKSGRAQKCIVVYATSDFSSLDRCNAA  229
            + ML + +DAD  V+ L+GERGREV EF +  LS   R ++C++V ATSD ++L+R  A 
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETR-KRCVIVVATSDRPALERVRAL  230

Query  230  LLATTIAEYFRDQGKKVVLFLDSITRYARALRDVALAAGEAPARRGYPASVFDSLPSILE  289
            ++ATTIAE+FRD+GK+VVL+ DS+TRYARA R++ALAAGE++    YP++VF +LP +LE
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  290  RPSNTKNGSITAFYTILLesddepdpiseeiRSILDGHIYLSKKLAIKNHYPAIDVLHSI  349
            R +   +GSITAFYT+L+E+DD  +P+++E+RS+LDGHI LS++LA + HYPAIDVL ++
Sbjct  291  RTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  350  SRVSSQICDTNHLSMAGEFRNILAKIQELQMFVELGEYRQGENAENDRAIKKRPALLKWL  409
            SRV + +   +H  +A+ +R  LA  QE+++++ +GEY++G +++ D+AI   P +   L
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  410  QQSMNEHSSFEQTLQAMNEL  429
            +QS +E  + E  ++ ++++
Sbjct  411  RQSKDEVCGPELLIEKLHQI  430

1263) Bmul_3064 in NC_010084


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  245 bits (914),  Expect = 6e-66, Method: Compositional matrix adjust.
 Identities = 186/399 (47%), Positives = 266/399 (67%), Gaps = 23/399 (5%)

Query  115  VGAECTIELPPGSTLPYAEAEVVGFSGERLFLMPTTDVAGVLPGARVWPLERAPVADPLA  174
            +G  C I   PG  L    AEVVG++G + +L P T  AG+  G +V +L R        
Sbjct  42   MGELCCIK--PGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRR-------  88

Query  175  GAKRLPVGWEMLGRVVDAAGRPLDG--LGPLASKVDAPLSAPSINPLDREPIHHVLDVGV  232
               ++PVG  +LGRV+D+ GRPLDG  L  +  K   ++++P+   + R+PI + L  G+
Sbjct  89   --HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGI  143

Query  233  RAINALLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQI  292
            RAI+++ T G GQR+G+F+++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  
Sbjct  144  RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFT  203

Query  293  LGEDGLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQRE  352
            L+E+   R V+V A +D ++L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A RE
Sbjct  204  LSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAARE  263

Query  353  IALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSA  412
            IALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  
Sbjct  264  IALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEV  321

Query  413  RAILDGHIVLSRALAEAGHYPAIDIEASISRAMTALIDDTHLDRVRHFKQMLSRYQRNRD  472
            R++LDGHIVLSR LAE GHYPAID+ A++SR    +  + H +    +++ L+ YQ    
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  473  LIAVGAYAPGRDAQLDRAIALYPRIEAFLQQGFRE-CAP  510
            LI +G Y  G D++ D+AI  YP I +FL+Q+  E C+P
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

1264) fliI in NC_010804


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  245 bits (914),  Expect = 6e-66, Method: Compositional matrix adjust.
 Identities = 186/399 (47%), Positives = 266/399 (67%), Gaps = 23/399 (5%)

Query  114  VGAECTIELPPGSTLPYAEAEVVGFSGERLFLMPTTDVAGVLPGARVWPLERAPVADPLA  173
            +G  C I   PG  L    AEVVG++G + +L P T  AG+  G +V +L R        
Sbjct  42   MGELCCIK--PGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRR-------  88

Query  174  GAKRLPVGWEMLGRVVDAAGRPLDG--LGPLASKVDAPLSAPSINPLDREPIHHVLDVGV  231
               ++PVG  +LGRV+D+ GRPLDG  L  +  K   ++++P+   + R+PI + L  G+
Sbjct  89   --HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGI  143

Query  232  RAINALLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQI  291
            RAI+++ T G GQR+G+F+++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  
Sbjct  144  RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFT  203

Query  292  LGEDGLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQRE  351
            L+E+   R V+V A +D ++L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A RE
Sbjct  204  LSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAARE  263

Query  352  IALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSA  411
            IALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  
Sbjct  264  IALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEV  321

Query  412  RAILDGHIVLSRALAEAGHYPAIDIEASISRAMTALIDDTHLDRVRHFKQMLSRYQRNRD  471
            R++LDGHIVLSR LAE GHYPAID+ A++SR    +  + H +    +++ L+ YQ    
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  472  LIAVGAYAPGRDAQLDRAIALYPRIEAFLQQGFRE-CAP  509
            LI +G Y  G D++ D+AI  YP I +FL+Q+  E C+P
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

1265) Pat9b_2392 in NC_014837


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  245 bits (913),  Expect = 6e-66, Method: Compositional matrix adjust.
 Identities = 179/408 (44%), Positives = 260/408 (64%), Gaps = 15/408 (3%)

Query  27   RYGRLVRATGLVLEATGLQLPLGATCIIERHDGATITEVESEVVGFNGQKLFLMPLEEVD  86
            R GR+   ++ +L+A    + +G  C I   +  +      EVVG+NG K +L P+    
Sbjct  21   RWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELA------EVVGINGSKALLSPFTSTA  74

Query  87   GILPGARVYARVTGDNAHSGKqlllgpqllgRVLDGSGKPLDGLPSPDTGYRAPLITAPF  146
            G+  G +V A    ++   G  LL       RV+DG G+PLDG   P+   +    + P 
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLG------RVIDGFGRPLDGRELPEVCWKD-YDAMPP  127

Query  147  NPLQRTPIEDVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTKADVIVVG  206
             ++ R PI + L TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+ 
Sbjct  128  PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV  187

Query  207  LIGERGREVKEFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHV  266
            LIGERGREV+EFI+  L+ E R R V++ A +D ++L R+++   AT IAE FRD G++V
Sbjct  188  LIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRV  247

Query  267  LLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGTHGGGSITAFYT  326
            +L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYT
Sbjct  248  VLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYT  305

Query  327  VLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDENHYAR  386
            VL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    +  ++H   
Sbjct  306  VLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQL  365

Query  387  VRQFKQLLSSFQRNRDLVSVGAYAAGSDPMLDRAIKLYPQMEAFLQQG  434
               +++ L+ +Q    L+ +G Y  G D   D+AI  YP++ +FL+Q+
Sbjct  366  AAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1266) Plabr_2460 in NC_015174


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  244 bits (910),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 188/378 (50%), Positives = 276/378 (74%), Gaps = 6/378 (1%)

Query  41   LGAVCRIEAGQRQGIDAEVIGLEDDEIILQPYGELAGIKRGDTVRLVHSAQRIRVGDRLL  100
            +G +C I +G+     AEV+G+++   +L P+   AG+  G+ V  ++  +++ VG+ LL
Sbjct  42   MGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  101  GRVINARGEFIDG-DLPPVLPESLMLQNAPIAPLQRPRITERLETGVRAIDSLLTCGQGQ  159
            GRVI++ G  +DG +LP V       +  P +++ R  IT+ L TG+RAIDS+ TCG+GQ
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  160  RLGIFAGSGVGKSTLLGQLARYASADVNvvvlvgergrevreflerdlgeegrrrSVLVV  219
            R+GIF+++GVGKSTLL+ L   + AD NV+VL+GERGREVREF++  L+EE R+R V+VV
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  220  ATSEESALLRRQCANVGTAVAEYFRDQGKNVLLMMDSVTRYALAQREIGLAAGEPPATRG  279
            ATS+ +AL R +   V+T++AE+FRD+GK V+L+ DS+TRYA A REI+LAAGE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  280  YPPSVFALLPRLLERSGRTERGSITGLYTVLVEGDDTNEPIADTVRGILDGHIVLSRDLA  339
            YPP+VF+ LPRLLER+G  E+GSIT++YTVLVEGDD NEP+AD VR++LDGHIVLSR LA
Sbjct  277  YPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  340  HKAHWPAIDILGSISRLMNELADETHLAAARQLKQLMAAYRQSEDLINIGAYQHGSNRVV  399
            +++H PAID+L+++SR+   ++ + H   A  L++ +A Y++ E LI IG YQ+G +   
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  400  DRAIQLKPRIDEFLQQTS  417
            D+AI+  P I  FL+Q+ 
Sbjct  397  DKAIDTYPDICTFLRQSK  414

1267) BamMC406_2978 in NC_010551


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  244 bits (911),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 185/402 (47%), Positives = 266/402 (67%), Gaps = 29/402 (7%)

Query  101  VGAECTIELPPGSTLPHAEAEVVGFSGDRLFLMPTTDVAGVLPGARV---WPRESAPVAD  157
            +G  C I   PG  L    AEVVG++G + +L P T  AG+  G +V   + R+  PV++
Sbjct  42   MGELCCIK--PGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGE  95

Query  158  PLAGAKRLPVGWEMLGRVVDASGRPLDG--LGPLASKVDASLSAPSINPLDREPIHHVLD  215
            +L            LGRV+D+ GRPLDG  L  +  K   ++++P+   + R+PI + L 
Sbjct  96   AL------------LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLM  140

Query  216  VGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFI  275
             G+RAI+++ T G GQR+G+F+++GVGKS LL+ +     A+  V+ LIGERGREV+EFI
Sbjct  141  TGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFI  200

Query  276  EQILGEDGLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMA  335
            +  L+E+   R V+V A +D ++L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A
Sbjct  201  DFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARA  260

Query  336  QREIALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIA  395
             REIALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+A
Sbjct  261  AREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLA  318

Query  396  DSARAILDGHIVLSRALAEAGHYPAIDIEASISRAMTALIDETHLDRVRQFKQMLSRYQR  455
            D  R++LDGHIVLSR LAE GHYPAID+ A++SR    +  + H +    +++ L+ YQ 
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  456  NRDLIAVGAYAPGRDAQLDRAIALYPRIESFLQQGFRE-CAP  496
               LI +G Y  G D++ D+AI  YP I +FL+Q+  E C+P
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

1268) Bcen_2453 in NC_008060


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  244 bits (910),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 185/399 (47%), Positives = 264/399 (67%), Gaps = 23/399 (5%)

Query  101  VGAECTIELPPGSTLPHAEAEVVGFAGDRLFLMPTTDVAGVLPGARVWPRESAPVTDPLA  160
            +G  C I   PG  L    AEVVG+ G + +L P T  AG+  G +V          +L 
Sbjct  42   MGELCCIK--PGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQV---------MALR  86

Query  161  GAKRLPVGWEMLGRVVDASGRPLDG--LGPLASKVDAPLSAPSINPLDREPIHHVLDVGV  218
               ++PVG  +LGRV+D+ GRPLDG  L  +  K   ++++P+   + R+PI + L  G+
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGI  143

Query  219  RAINALLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQI  278
            RAI+++ T G GQR+G+F+++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  
Sbjct  144  RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFT  203

Query  279  LGEDGLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQRE  338
            L+E+   R V+V A +D ++L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A RE
Sbjct  204  LSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAARE  263

Query  339  IALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSA  398
            IALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  
Sbjct  264  IALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEV  321

Query  399  RAILDGHIVLSRALAEAGHYPAIDIEASISRAMTALIDETHLDHVRQFKQMLSRYQRNRD  458
            R++LDGHIVLSR LAE GHYPAID+ A++SR    +  + H +    +++ L+ YQ    
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  459  LIAVGAYAPGRDAQLDRAIALYPRIEAFLQQGFRE-CAP  496
            LI +G Y  G D++ D+AI  YP I +FL+Q+  E C+P
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

1269) Bcen2424_3067 in NC_008542


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  244 bits (910),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 185/399 (47%), Positives = 264/399 (67%), Gaps = 23/399 (5%)

Query  101  VGAECTIELPPGSTLPHAEAEVVGFAGDRLFLMPTTDVAGVLPGARVWPRESAPVTDPLA  160
            +G  C I   PG  L    AEVVG+ G + +L P T  AG+  G +V          +L 
Sbjct  42   MGELCCIK--PGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQV---------MALR  86

Query  161  GAKRLPVGWEMLGRVVDASGRPLDG--LGPLASKVDAPLSAPSINPLDREPIHHVLDVGV  218
               ++PVG  +LGRV+D+ GRPLDG  L  +  K   ++++P+   + R+PI + L  G+
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGI  143

Query  219  RAINALLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQI  278
            RAI+++ T G GQR+G+F+++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  
Sbjct  144  RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFT  203

Query  279  LGEDGLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQRE  338
            L+E+   R V+V A +D ++L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A RE
Sbjct  204  LSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAARE  263

Query  339  IALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSA  398
            IALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  
Sbjct  264  IALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEV  321

Query  399  RAILDGHIVLSRALAEAGHYPAIDIEASISRAMTALIDETHLDHVRQFKQMLSRYQRNRD  458
            R++LDGHIVLSR LAE GHYPAID+ A++SR    +  + H +    +++ L+ YQ    
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  459  LIAVGAYAPGRDAQLDRAIALYPRIEAFLQQGFRE-CAP  496
            LI +G Y  G D++ D+AI  YP I +FL+Q+  E C+P
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

1270) fliI in NC_011000


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  244 bits (909),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 185/402 (47%), Positives = 265/402 (66%), Gaps = 29/402 (7%)

Query  89   VGAECTIELPPGSTLPHAEAEVVGFAGDRLFLMPTTDVAGVLPGARV---WPRESAPVAD  145
            +G  C I   PG  L    AEVVG+ G + +L P T  AG+  G +V   + R+  PV++
Sbjct  42   MGELCCIK--PGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGE  95

Query  146  PLAGAKRLPVGWEMLGRVVDASGRPLDG--LGPLASKVDAPLSAPSINPLDREPIHHVLD  203
            +L            LGRV+D+ GRPLDG  L  +  K   ++++P+   + R+PI + L 
Sbjct  96   AL------------LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLM  140

Query  204  VGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFI  263
             G+RAI+++ T G GQR+G+F+++GVGKS LL+ +     A+  V+ LIGERGREV+EFI
Sbjct  141  TGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFI  200

Query  264  EQILGEDGLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMA  323
            +  L+E+   R V+V A +D ++L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A
Sbjct  201  DFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARA  260

Query  324  QREIALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIA  383
             REIALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+A
Sbjct  261  AREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLA  318

Query  384  DSARAILDGHIVLSRALAEAGHYPAIDIEASISRAMTALIDETHLDHVRQFKQMLSRYQR  443
            D  R++LDGHIVLSR LAE GHYPAID+ A++SR    +  + H +    +++ L+ YQ 
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  444  NRDLIAVGAYAPGRDAQLDRAIALYPRIEAFLQQGFRE-CAP  484
               LI +G Y  G D++ D+AI  YP I +FL+Q+  E C+P
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

1271) Bcenmc03_3086 in NC_010508


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  244 bits (911),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 185/399 (47%), Positives = 264/399 (67%), Gaps = 23/399 (5%)

Query  102  VGAECTIELPPGSTLPHAEAEVVGFAGDRLFLMPTTDVAGVLPGARVWPRESAPVTDPLA  161
            +G  C I   PG  L    AEVVG+ G + +L P T  AG+  G +V          +L 
Sbjct  42   MGELCCIK--PGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQV---------MALR  86

Query  162  GAKRLPVGWEMLGRVVDASGRPLDG--LGPLASKVDAPLSAPSINPLDREPIHHVLDVGV  219
               ++PVG  +LGRV+D+ GRPLDG  L  +  K   ++++P+   + R+PI + L  G+
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGI  143

Query  220  RAINALLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQI  279
            RAI+++ T G GQR+G+F+++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  
Sbjct  144  RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFT  203

Query  280  LGEDGLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQRE  339
            L+E+   R V+V A +D ++L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A RE
Sbjct  204  LSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAARE  263

Query  340  IALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSA  399
            IALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  
Sbjct  264  IALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEV  321

Query  400  RAILDGHIVLSRALAEAGHYPAIDIEASISRAMTALIDETHLDHVRQFKQMLSRYQRNRD  459
            R++LDGHIVLSR LAE GHYPAID+ A++SR    +  + H +    +++ L+ YQ    
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  460  LIAVGAYAPGRDAQLDRAIALYPRIEAFLQQGFRE-CAP  497
            LI +G Y  G D++ D+AI  YP I +FL+Q+  E C+P
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

1272) Bcep18194_A6416 in NC_007510


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  244 bits (911),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 184/402 (46%), Positives = 265/402 (66%), Gaps = 29/402 (7%)

Query  107  VGAECTIELPPGSTLPHAEAEVVGFAGDRLFLMPTTDVAGVLPGARV---WPRESAPVAD  163
            +G  C I   PG  L    AEVVG+ G + +L P T  AG+  G +V   + R+  PV++
Sbjct  42   MGELCCIK--PGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGE  95

Query  164  PLAGAKRLPVGWEMLGRVVDASGRPLDG--LGPLASKVDAPLSAPSINPLEREPIHHVLD  221
            +L            LGRV+D+ GRPLDG  L  +  K   ++++P+   + R+PI + L 
Sbjct  96   AL------------LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLM  140

Query  222  VGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFI  281
             G+RAI+++ T G GQR+G+F+++GVGKS LL+ +     A+  V+ LIGERGREV+EFI
Sbjct  141  TGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFI  200

Query  282  EQILGEDGLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMA  341
            +  L+E+   R V+V A +D ++L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A
Sbjct  201  DFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARA  260

Query  342  QREIALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIA  401
             REIALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+A
Sbjct  261  AREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLA  318

Query  402  DSARAILDGHVVLSRALAEAGHYPAIDIEASISRAMTALIDETHLDHVRQFKQMLSRYQR  461
            D  R++LDGH+VLSR LAE GHYPAID+ A++SR    +  + H +    +++ L+ YQ 
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  462  NRDLIAVGAYAPGRDAQLDRAIALYPRIEAFLQQGFRE-CAP  502
               LI +G Y  G D++ D+AI  YP I +FL+Q+  E C+P
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

1273) Tcr_1439 in NC_007520


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  244 bits (909),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 169/383 (45%), Positives = 265/383 (70%), Gaps = 7/383 (1%)

Query  66   AEVVGFNDDRLYLMPIGKIHGLEPNARvipvsggikvgvsssMLGRIIDGAGNPLDDKG-  124
            AEVVG+N+ +  L P+    GL+   +V+++    +V V+ ++LGR+IDG G PLD++  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  125  -PISFDKRVSLNGDKINPLHRAPIKEPLDVGIKTINGLLTLGKGQRVGLLAGTGVGKSVL  183
              +        ++    ++ R PI +PL  GI++I+++ T G GQRVG++++ GVGKS L
Sbjct  115  PEVCWK---DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  184  LGMMTRFTDAevvvvglvgergrevNDFVRNNLGEEGLKRSVVVATPADDPPLMRLHGAM  243
            L+M+    DA+  V+ L+GERGREV +F+   L+EE  KR V+V + +D P+L R+++  
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  244  LATSVAEYFRDQGKNVLLLMDSLTRFAQAQREIALAVGEPPASKGYPPSVFAKLPQLVER  303
            +AT++AE+FRD+GK V+LL DSLTR+A+A REIALA GE + S  YPP+VF+ LP+L+ER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  304  AGNGASHSGSITAIYTVLAEGDDQNDPVVDSARGVLDGHILLSRQIADSGRYPAIDIEAS  363
            +G G  + GSITA+YTVL EGDD N+P+ D  R++LDGHI+LSR++A+ G+YPAID+ A+
Sbjct  292  TGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  364  ISRVMIDVVPQQQNKLARRFKQLYSTYQQNQDLISIGAYRKGTDAAIDEAIEKHPQLSHF  423
            +SRV   V ++++ +LA  +++  + YQ+ + LI IG Y++G D+  D AI+  P++  F
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  424  LSQSIDESFSVKESLSALESVLS  446
            L QS DE  +    +  L+ +L+
Sbjct  410  LRQSKDEVCGPELLIEKLHQILT  432

1274) fliI in NC_011757


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  244 bits (912),  Expect = 7e-66, Method: Compositional matrix adjust.
 Identities = 170/384 (45%), Positives = 247/384 (65%), Gaps = 8/384 (2%)

Query  69   EVIGFAGDRALAMPFGSLEGVRRGCPALVRD-EAAGAIRPSAAWLGRTVDALGRPIDGLG  127
            EV+G+ G +AL  PF S  G++  C   V        +  + A LGR +D++GRP+DG  
Sbjct  56   EVVGINGSKALLSPFTSTAGLH--CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE  113

Query  128  PLAQGPAIYPLRADPPPAHGRRRVGPPLDLGVRCINTFLTMC-RGQRMGIFAGSGVGKSV  186
                    Y   A PPPA  R+ +  PL  G+R I++ ++ C  GQR+GIF+++GVGKS 
Sbjct  114  LPEVCWKDYD--AMPPPAMVRQPITQPLMTGIRAIDS-VATCGEGQRVGIFSAPGVGKST  170

Query  187  LLSMLARYTAADVAVIGLVGERGREVQEFLQDDLGAAGLARSVVVVATSDEPVLMRRNAA  246
            LL+ML     AD  V+ L+GERGREV+EF++  L+     R V+VVATSD P L R  A 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  247  YVTLAVAEYFRDQGAQVLCMIDSITRFAMAQRDIGLAGGEPPTAKGYTPTVFSELPRLLE  306
            +V+ ++AE+FRD+G +V+ + DS+TR+A A R+I+LA+GE + +  Y P VFS LPRLLE
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  307  RAGPGVGEGAISGLFTVLVEGDDHNEPVADAVRGILDGHIVMERRIAEQGRYPAINVLRS  366
            R+G G   G+I++++TVLVEGDD NEP+AD VR++LDGHIV+ RR+AE+G+YPAI+VL +
Sbjct  291  RTGMG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  367  VSRTMPRACDPAHLPTVRRARKVLATYADMEELIRLGAYRAGSAPEVDEAVALMPDLTAF  426
            +SR  P      H       R+ LA Y ++E LIR+G Y+ G   + D A+   PD+ +F
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  427  LGQGKEEATSISEGYDRLAAIVGG  450
            L Q+K+E  +     ++L  I+  
Sbjct  410  LRQSKDEVCGPELLIEKLHQILTE  433

1275) fliI in NC_022270


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  244 bits (911),  Expect = 8e-66, Method: Compositional matrix adjust.
 Identities = 167/365 (46%), Positives = 258/365 (71%), Gaps = 3/365 (0%)

Query  66   AQVVGFDHTVAYLMPIRRLGGLFAGAKVIPLDGDSTVQLSSQWLGRVVNGLGEPFDDGAP  125
            A+VVG++ + A L P+   +GL  G +V++L     V ++   LGRV++G+G P+D G  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRE  113

Query  126  LKGGDRVSLEPKPINPLKRRPVDTPLDVGVRAINGLLTVGKGQRIGLMAGSGVGKSVLMG  185
            L    +   ++ P  ++ R+P+  PL  G+RAI+++ T G GQR+G+ +++GVGKS L++
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  186  MITQNTEADVIVVGLIgergrevrefverNLTPEARKKAIIVAAPADESPLMRLRATLLC  245
            M+ +  +AD  V+ LIGERGREVREF++  L+ E+RK+ +IV A +D ++L R+RA ++ 
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  246  HRVAEYFRDQGKDVLLLMDSLTRYAMAQREIALSLGEPPASRGYPPSVFSVLPQLLERAG  305
              +AE+FRD+GK V+LL DSLTRYA A REIAL+ GE + S  YPP+VFS LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  306  NSENPNGSLTAIYTVLAEGDDQQDPVVDSARAILDGHVVLSRQLAEQGHYPAIDINASIS  365
             +E  +GS+TA+YTVL EGDD ++P+ D  R++LDGH+VLSR+LAE+GHYPAID+ A++S
Sbjct  294  MGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  366  RCMNACTHEAHSTIANNFRQLYSNYLQVKELLPLGGYQPGQDPELDQSVSMYPHLRAYLQ  425
            R     T + H  +A  +R+  + Y +V  L+ +G YQ G D + D+++  YP++ ++L+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  426  QSANE  430
            QS +E
Sbjct  412  QSKDE  416

1276) VIBHAR_04976 in NC_009784


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  244 bits (911),  Expect = 8e-66, Method: Compositional matrix adjust.
 Identities = 167/365 (46%), Positives = 258/365 (71%), Gaps = 3/365 (0%)

Query  66   AQVVGFDHTVAYLMPIRRLGGLFAGAKVIPLDGDSTVQLSSQWLGRVVNGLGEPFDDGAP  125
            A+VVG++ + A L P+   +GL  G +V++L     V ++   LGRV++G+G P+D G  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRE  113

Query  126  LKGGDRVSLEPKPINPLKRRPVDTPLDVGVRAINGLLTVGKGQRIGLMAGSGVGKSVLMG  185
            L    +   ++ P  ++ R+P+  PL  G+RAI+++ T G GQR+G+ +++GVGKS L++
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  186  MITQNTEADVIVVGLIgergrevrefverNLTPEARKKAIIVAAPADESPLMRLRATLLC  245
            M+ +  +AD  V+ LIGERGREVREF++  L+ E+RK+ +IV A +D ++L R+RA ++ 
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  246  HRVAEYFRDQGKDVLLLMDSLTRYAMAQREIALSLGEPPASRGYPPSVFSVLPQLLERAG  305
              +AE+FRD+GK V+LL DSLTRYA A REIAL+ GE + S  YPP+VFS LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  306  NSENPNGSLTAIYTVLAEGDDQQDPVVDSARAILDGHVVLSRQLAEQGHYPAIDINASIS  365
             +E  +GS+TA+YTVL EGDD ++P+ D  R++LDGH+VLSR+LAE+GHYPAID+ A++S
Sbjct  294  MGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  366  RCMNACTHEAHSTIANNFRQLYSNYLQVKELLPLGGYQPGQDPELDQSVSMYPHLRAYLQ  425
            R     T + H  +A  +R+  + Y +V  L+ +G YQ G D + D+++  YP++ ++L+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  426  QSANE  430
            QS +E
Sbjct  412  QSKDE  416

1277) fliI in NC_009381


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  244 bits (911),  Expect = 8e-66, Method: Compositional matrix adjust.
 Identities = 169/415 (41%), Positives = 272/415 (66%), Gaps = 16/415 (3%)

Query  24   GRLVRVTGLLLESVGCRLA---IGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGV  80
            GR+  V++ LL++   +L+   +G+ C I + +E    A+VVG++   + L PF   +G+
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGL  76

Query  81   LGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTplqqqlpqihplqRRAV  140
              G +V +  +  ++ +G++ LGRVI+G+G PLDG+ +L      + +     ++ R+++
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPI  135

Query  141  DTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE  200
              PL  G+ AI+++ T G GQRVG+ +++GVGKS LL+M+    +AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  201  VKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLT  260
            V+EFI+ +L      + V+V A +D ++L R++A  +  +IA ++RD+G  V+LL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  261  RYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAG---NSTMTAIYTVLAEGDDQQD  317
            RYA A REIAL+ GE + +  YPP+ FS +PRL E +G   ++++TA+YTVL EGDD ++
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  318  PIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYAD  377
            P+ D  R++LDGHIVLSR+LAE GHYPAID+  ++SR  + V + ++ + A++L++  A 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  378  YMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQ---EVGHPALFSASVEQL  429
            Y  +  LI +G Y  G D  +D+A++ YP I  FLRQ   EV  P L+   ++Q+
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1278) fliI in NC_012483


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  243 bits (907),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 189/383 (50%), Positives = 271/383 (71%), Gaps = 13/383 (3%)

Query  55   CCEIVDSEGEVHLAEAIGFRGANLITMPVESSSGIRYGDTVAALGVQPSIDVGEGLIGRV  114
            CC  + +  E  LAE +G+ G++ +  P  S++G++ G+ V AL  +  + VGE+L+GRV
Sbjct  46   CC--IKPGEE--LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRV  101

Query  115  LNALGQPLD----RAGSLRATDALPLERAVPHPLDRTPIRMPLGTGIRAIDSMLTVGRGQ  170
            ++++G+PLD         +  DA+P     P ++ R PI  PL TGIRAIDS+ T G GQ
Sbjct  102  IDGFGRPLDGRELPEVCWKDYDAMP-----PPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  171  RVGIFGGSGVGKSTLIGMMTRNSDADVIvvglvgergrevgefleDSLGPEGRKRSVVVV  230
            RVGIF+++GVGKSTL++M+   +DAD  V+ L+GERGREV EF++ +L+ E RKR V+VV
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  231  STSDQtpllrmraalaattvaEYFADQGKHVLLVLDSLTRFAMAAREVGLAAGEPPTAKG  290
            +TSD+ +L R+RA + ATT+AE+F D+GK+V+L+ DSLTR+A AARE++LAAGE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  291  YTPSVFSRLAQLVERAGQFREGSITAFYTVLMEGDDQQDTLVDAVRSYLDGHVVLSRTLA  350
            Y P+VFS L++L+ER+G    GSITAFYTVL+EGDD ++ L D VRS LDGH+VLSR LA
Sbjct  277  YPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  351  SQGWYPPIELLDSISRLMPSVASGEHRGAAATVRRMLAAYARSEDLVRIGAYKAGTDPEL  410
             +G YP+I++L ++SR+ P V+S EHR  AA +RR LA Y   E L+RIG Y+ G D + 
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  411  DDALRTREAVRAFLMQDAGEAVS  433
            D A+ T   + +FL Q  +E  +
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCG  419

1279) BTH_I0197 in NC_007651


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  243 bits (908),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 179/380 (48%), Positives = 256/380 (68%), Gaps = 17/380 (4%)

Query  116  AEVVGFAGERLFLMPTTAVAGVLPGARVWPLESAPVADPLAGAKRLPVGWELLGRVVDAS  175
            AEVVG+ G + +L P T+ AG         L+ +    +L    ++PVG  LLGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  176  GRPLD--NLGPLASKVDAPLTAPSINPLDREPIHHVLDVGVRAINGLLTVGRGQRMGLFA  233
            GRPLD  +L  +  K   ++ +P+   + R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  234  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  293
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  294  pLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  353
            +L R+++   ATT+AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  354  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRSLAEAGH  413
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  414  YPAIDIEASISRAMTALIDDAHLERVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAI  473
            YPAID+ A++SR    +  + H +    +++ L+ YQ    LI +G Y  G D++ D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  474  ALYPRIESFLQQGFRE-CAP  492
              YP I +FL+Q+  E C+P
Sbjct  401  DTYPDICTFLRQSKDEVCGP  420

1280) GEM_0374 in NC_018513


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  243 bits (908),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 184/399 (47%), Positives = 264/399 (67%), Gaps = 23/399 (5%)

Query  101  VGAECTIELPPGSTLPHAEAEVVGFSGDRLFLMPTTDVAGVLPGARVWPLESAPVADPLA  160
            +G  C I   PG  L    AEVVG++G + +L P T  AG         L+ +    +L 
Sbjct  42   MGELCCIK--PGEEL----AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALR  86

Query  161  GAKRLPVGWEMLGRVVDASGRPLDG--LGPLASKVDAPLSAPSINPLDREPIHHVLDVGV  218
               ++PVG  +LGRV+D+ GRPLDG  L  +  K   ++++P+   + R+PI + L  G+
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGI  143

Query  219  RAINALLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQI  278
            RAI+++ T G GQR+G+F+++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  
Sbjct  144  RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFT  203

Query  279  LGEDGLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQRE  338
            L+E+   R V+V A +D ++L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A RE
Sbjct  204  LSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAARE  263

Query  339  IALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSA  398
            IALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  
Sbjct  264  IALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEV  321

Query  399  RAILDGHIVLSRALAEAGHYPAIDIEASISRAMTALIDETHLDRVRHFKQMLSRYQRNRD  458
            R++LDGHIVLSR LAE GHYPAID+ A++SR    +  + H +    +++ L+ YQ    
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  459  LIAVGAYAPGRDAQLDRAIALYPRIEAFLQQGFRE-CAP  496
            LI +G Y  G D++ D+AI  YP I +FL+Q+  E C+P
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

1281) C380_20795 in NC_018708


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 185/416 (45%), Positives = 267/416 (65%), Gaps = 24/416 (5%)

Query  53   VGSQCMVQMPGHAPVLAEVVGFSADRAFLMPAGDIHGLSSGASVVPAAPYITMPRLGEPP  112
            +G  C ++ PG+   LAEVVG+++ +A+L P     GL  G  V      +++ R     
Sbjct  42   MGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV------MALRR-----  87

Query  113  RPVQRAGVLRLPMGDGLLGRVVDAQGLPLDHGGPVQDVVSEPMGRRQINAMDRDPVREPL  172
                R  V   P+G++LLGRV+D+ G PLD G  + +V     +     AM R+P+ +PL
Sbjct  88   ----RHQV---PVGEALLGRVIDGFGRPLD-GRELPEVCWKDYDAMPPPAMVRQPITQPL  139

Query  173  DTGVRAINALLTVGRGQRLGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKEF  232
             TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EF
Sbjct  140  MTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREF  199

Query  233  VEDILGEEGRARSvvvaapadappLLRMQGASYATAVAEHFRDKGQHVLLLMDSLTRYAM  292
            ++  L+EE R R V+V A +D P+L R+++   AT++AE FRD+G++V+LL DSLTRYA 
Sbjct  200  IDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYAR  259

Query  293  AQREIALAIGEPPATKGYPPSCFAKLPQLVERSGNGLHGVGSITAFYTVLSEGDDQQDPI  352
            A REIALA GE + +  YPP+ F+ LP+L+ER+G G    GSITAFYTVL EGDD ++P+
Sbjct  260  AAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPL  317

Query  353  ADAARAILDGHIVLSRALAETGHFPAIDIEQSASRVMHNVVSRGHFDLARRFRAVYSRYQ  412
            AD  R++LDGHIVLSR LAE GH+PAID+  + SRV   V S+ H +LA  +R   + YQ
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  413  KSRDLVQVGAYMSGSDPALDEAIRLQPQMAGFLQQDMFEAASMDQSVGAMAAVLDH  468
                L+++G Y  G D   D AI   P++  FL+Q   E  + +  +  +  +L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1282) fliI in NC_012808


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  243 bits (907),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 169/384 (45%), Positives = 247/384 (65%), Gaps = 8/384 (2%)

Query  69   EVIGFAGDRALAMPFGSLEGVRRGCPALVRD-EAAGAIRPSAAWLGRTVDALGRPIDGLG  127
            EV+G+ G +AL  PF S  G++  C   V        +  + A LGR +D++GRP+DG  
Sbjct  56   EVVGINGSKALLSPFTSTAGLH--CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE  113

Query  128  PLAQGPAIYPLRADPPPAHGRRRVGPPLDLGVRCINTFLTMC-RGQRMGIFAGSGVGKSV  186
                    Y   A PPPA  R+ +  PL  G+R I++ ++ C  GQR+GIF+++GVGKS 
Sbjct  114  LPEVCWKDYD--AMPPPAMVRQPITQPLMTGIRAIDS-VATCGEGQRVGIFSAPGVGKST  170

Query  187  LLSMLARYTAADVAVIGLVGERGREVQEFLQDDLGAAGLAHSVVVVATSDEPVLMRRNAA  246
            LL+ML     AD  V+ L+GERGREV+EF++  L+     + V+VVATSD P L R  A 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  247  YVTLAVAEYFRDQGAQVLCMIDSITRFAMAQRDIGLAGGEPPTAKGYTPTVFSELPRLLE  306
            +V+ ++AE+FRD+G +V+ + DS+TR+A A R+I+LA+GE + +  Y P VFS LPRLLE
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  307  RAGPGVGEGAISGLFTVLVEGDDHNEPVADAVRGILDGHIVMERRIAEQGRYPAINVLRS  366
            R+G G   G+I++++TVLVEGDD NEP+AD VR++LDGHIV+ RR+AE+G+YPAI+VL +
Sbjct  291  RTGMG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  367  VSRTMPRACDPAHLPTVRRARKVLATYADMEELIRLGAYRAGSSPEVDEAVALMPDLTAF  426
            +SR  P      H       R+ LA Y ++E LIR+G Y+ G   + D A+   PD+ +F
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  427  LGQGKEEATSISEGYDRLAAIVGG  450
            L Q+K+E  +     ++L  I+  
Sbjct  410  LRQSKDEVCGPELLIEKLHQILTE  433

1283) fliI in NC_012988


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  243 bits (906),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 171/386 (45%), Positives = 253/386 (66%), Gaps = 12/386 (3%)

Query  69   EVIGFAGDRALAMPFGSLEGVRRGCPALVRD-EAAGAIRPSAAWLGRTVDALGRPIDGLG  127
            EV+G+ G +AL  PF S  G++  C   V        +  + A LGR +D++GRP+DG  
Sbjct  56   EVVGINGSKALLSPFTSTAGLH--CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE  113

Query  128  PLAQGPAIYPLRADPPPAHGRRRVGPPLDLGVRCINTFLTMC-RGQRMGIFAGSGVGKSV  186
                    Y   A PPPA  R+ +  PL  G+R I++ ++ C  GQR+GIF+++GVGKS 
Sbjct  114  LPEVCWKDYD--AMPPPAMVRQPITQPLMTGIRAIDS-VATCGEGQRVGIFSAPGVGKST  170

Query  187  LLSMLARYTAADVAVIGLVGERGREVQEFLQDDLGAAGLARSVVVVATSDEPVLMRRNAA  246
            LL+ML     AD  V+ L+GERGREV+EF++  L+     R V+VVATSD P L R  A 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  247  YVTLAVAEYFRDQGAQVLCMIDSITRFAMAQRDIGLAGGEPPTAKGYTPTVFSELPRLLE  306
            +V+ ++AE+FRD+G +V+ + DS+TR+A A R+I+LA+GE + +  Y P VFS LPRLLE
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  307  RAGPGVGEGAISGLFTVLVEGDDHNEPVADAVRGILDGHIVMERRIAEQGRYPAINVLRS  366
            R+G G   G+I++++TVLVEGDD NEP+AD VR++LDGHIV+ RR+AE+G+YPAI+VL +
Sbjct  291  RTGMG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  367  VSRTMP--RACDPARLPTVRRARKVLATYADMEELIRLGAYRAGSSPEVDEAVALMPDLT  424
            +SR  P   + +  +L+++ R R  LA Y ++E LIR+G Y+ G   + D A+   PD+ 
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRR--LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  425  AFLGQGKEEATSISEGYDRLAAIVGG  450
            +FL Q+K+E  +     ++L  I+  
Sbjct  408  TFLRQSKDEVCGPELLIEKLHQILTE  433

1284) fliI in NC_010172


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  243 bits (906),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 171/386 (45%), Positives = 253/386 (66%), Gaps = 12/386 (3%)

Query  69   EVIGFAGDRALAMPFGSLEGVRRGCPALVRD-EAAGAIRPSAAWLGRTVDALGRPIDGLG  127
            EV+G+ G +AL  PF S  G++  C   V        +  + A LGR +D++GRP+DG  
Sbjct  56   EVVGINGSKALLSPFTSTAGLH--CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE  113

Query  128  PLAQGPAIYPLRADPPPAHGRRRVGPPLDLGVRCINTFLTMC-RGQRMGIFAGSGVGKSV  186
                    Y   A PPPA  R+ +  PL  G+R I++ ++ C  GQR+GIF+++GVGKS 
Sbjct  114  LPEVCWKDYD--AMPPPAMVRQPITQPLMTGIRAIDS-VATCGEGQRVGIFSAPGVGKST  170

Query  187  LLSMLARYTAADVAVIGLVGERGREVQEFLQDDLGAAGLARSVVVVATSDEPVLMRRNAA  246
            LL+ML     AD  V+ L+GERGREV+EF++  L+     R V+VVATSD P L R  A 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  247  YVTLAVAEYFRDQGAQVLCMIDSITRFAMAQRDIGLAGGEPPTAKGYTPTVFSELPRLLE  306
            +V+ ++AE+FRD+G +V+ + DS+TR+A A R+I+LA+GE + +  Y P VFS LPRLLE
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  307  RAGPGVGEGAISGLFTVLVEGDDHNEPVADAVRGILDGHIVMERRIAEQGRYPAINVLRS  366
            R+G G   G+I++++TVLVEGDD NEP+AD VR++LDGHIV+ RR+AE+G+YPAI+VL +
Sbjct  291  RTGMG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  367  VSRTMP--RACDPARLPTVRRARKVLATYADMEELIRLGAYRAGSSPEVDEAVALMPDLT  424
            +SR  P   + +  +L+++ R R  LA Y ++E LIR+G Y+ G   + D A+   PD+ 
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRR--LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  425  AFLGQGKEEATSISEGYDRLAAIVGG  450
            +FL Q+K+E  +     ++L  I+  
Sbjct  408  TFLRQSKDEVCGPELLIEKLHQILTE  433

1285) Bamb_3112 in NC_008390


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  243 bits (906),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 185/402 (47%), Positives = 265/402 (66%), Gaps = 29/402 (7%)

Query  101  VGAECTIELPPGSTLPHAEAEVVGFSGDRLFLMPTTDVAGVLPGARV---WPRESAPVAD  157
            +G  C I   PG  L    AEVVG++G + +L P T  AG+  G +V   + R+  PV++
Sbjct  42   MGELCCIK--PGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGE  95

Query  158  PLAGAKRLPVGWEMLGRVVDASGRPLDG--LGPLASKVDASLSAPSINPLDREPIHSVLD  215
            +L            LGRV+D+ GRPLDG  L  +  K   ++++P+   + R+PI   L 
Sbjct  96   AL------------LGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLM  140

Query  216  VGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFI  275
             G+RAI+++ T G GQR+G+F+++GVGKS LL+ +     A+  V+ LIGERGREV+EFI
Sbjct  141  TGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFI  200

Query  276  EQILGEDGLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMA  335
            +  L+E+   R V+V A +D ++L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A
Sbjct  201  DFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARA  260

Query  336  QREIALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIA  395
             REIALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+A
Sbjct  261  AREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLA  318

Query  396  DSARAILDGHIVLSRALAEAGHYPAIDIEASISRAMTALIDETHLDRVRQFKQMLSRYQR  455
            D  R++LDGHIVLSR LAE GHYPAID+ A++SR    +  + H +    +++ L+ YQ 
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  456  NRDLIAVGAYAPGRDAQLDRAIALYPRIESFLQQGFRE-CAP  496
               LI +G Y  G D++ D+AI  YP I +FL+Q+  E C+P
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

1286) Daci_0641 in NC_010002


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  243 bits (905),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 180/384 (47%), Positives = 252/384 (66%), Gaps = 23/384 (5%)

Query  77   LAEVVGFAGERAFLMPAGDIQGLSSGAIVTPAEPFVAPLRFGDGVEPPVSLAAGVLRLPI  136
            LAEVVG+ G +A+L P     GL  G  V +       LR  + V             P+
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQV-------------PV  93

Query  137  GSGLLGRVVDSQGQPLDHGGPLADVSADLLDRNPINAMDRDPVRETLDTGVRSLNALLTV  196
            G +LLGRV+D+ G+PLD G  L++V     D  P  AM R+P+ + L TG+R+++++ T 
Sbjct  94   GEALLGRVIDGFGRPLD-GRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATC  152

Query  197  GRGQRLGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKEFVEDILGAQDRSRa  256
            G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EF++  L+ + R R 
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  257  vvvaapadappLLRMQGAAYATAIAEHFRDKGQHVLLLMDSLTRYAMAQREIALAIGEPP  316
            V+V A +D P+L R+++   AT+IAE FRD+G++V+LL DSLTRYA A REIALA GE +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  317  ATKGYPPSCFAKLPALVERSGNGLNGVGSITAFYTVLSEGDDQQDPIADAARAILDGHVV  376
             +  YPP+ F+ LP L+ER+  G+   GSITAFYTVL EGDD ++P+AD  R++LDGH+V
Sbjct  273  VSGEYPPGVFSALPRLLERT--GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  377  LSRALAESGHYPAIDIEQSASRVMHNVVSREHFELARRFRAVYSRYQKGRDLVQVGAYMA  436
            LSR LAE GHYPAID+  + SRV   V S+EH +LA  +R   + YQ    L+++G Y  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  437  GSDPQMDEAIRLQPAMAAFLQQSM  460
            G D + D AI   P + +FL+QS 
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSK  414

1287) DelCs14_0579 in NC_015563


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  243 bits (905),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 180/384 (47%), Positives = 252/384 (66%), Gaps = 23/384 (5%)

Query  77   LAEVVGFAGERAFLMPAGDIQGLSSGAIVTPAEPFVAPLRFGDGVEPPVSLAAGVLRLPI  136
            LAEVVG+ G +A+L P     GL  G  V +       LR  + V             P+
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQV-------------PV  93

Query  137  GSGLLGRVVDSQGQPLDHGGPLADVSADLLDRNPINAMDRDPVRETLDTGVRSLNALLTV  196
            G +LLGRV+D+ G+PLD G  L++V     D  P  AM R+P+ + L TG+R+++++ T 
Sbjct  94   GEALLGRVIDGFGRPLD-GRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATC  152

Query  197  GRGQRLGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKEFVEDILGAQDRSRa  256
            G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EF++  L+ + R R 
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  257  vvvaapadappLLRMQGAAYATAIAEHFRDKGQHVLLLMDSLTRYAMAQREIALAIGEPP  316
            V+V A +D P+L R+++   AT+IAE FRD+G++V+LL DSLTRYA A REIALA GE +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  317  ATKGYPPSCFAKLPALVERSGNGLNGVGSITAFYTVLSEGDDQQDPIADAARAILDGHVV  376
             +  YPP+ F+ LP L+ER+  G+   GSITAFYTVL EGDD ++P+AD  R++LDGH+V
Sbjct  273  VSGEYPPGVFSALPRLLERT--GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  377  LSRALAESGHYPAIDIEQSASRVMHNVVSREHFELARRFRAVYSRYQKGRDLVQVGAYMA  436
            LSR LAE GHYPAID+  + SRV   V S+EH +LA  +R   + YQ    L+++G Y  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  437  GSDPQMDEAIRLQPAMAAFLQQSM  460
            G D + D AI   P + +FL+QS 
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSK  414

1288) fliI in NC_017082


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  242 bits (904),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 163/338 (49%), Positives = 242/338 (72%), Gaps = 6/338 (1%)

Query  108  GRVINALGAPLDGQGPLTPGSRPVSAEAEAPSAMKRARVHKPLRTGVRVIDLFAPICAGQ  167
            GRVI+++G PLDG+  L    +    +A +P+AM R  + +PL TG+R ID  A    GQ
Sbjct  99   GRVIDGFGRPLDGRE-LPEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  168  RVGIFAGSGVGKSTLLAMLARSQGFDTVVLALVGERGREVREFIEDVLGAN-RSRAITIV  226
            RVGIF+++GVGKSTLLAML  + + D+ VL L+GERGREVREFI+  L+ + R R + +V
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  227  STGDESPMMRRLAPKTAMAVAEYFRDRGESVLLVVDSITRFAHAAREVALAAGEPAVARG  286
            +T+D +++ R  A   A ++AE+FRD G  V+L+ DS+TR+A+AARE+ALAAGE AV+  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  287  YAPTVFTDLPRLLERAGPGEEGSGTITGIFSVLVDGDDHNEPIADTIRSTLDGHIVLSRH  346
            Y+P VF+ LPRLLER+G GE GS  IT++++VLV+GDD NEP+AD +RS LDGHIVLSR+
Sbjct  277  YPPGVFSALPRLLERTGMGEKGS--ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  347  IADQARYPAVDVLASVSRLAHNVWDPEERELVSKLRTMMSKYEDTRDLRLMGGYQAGRDS  406
            +A++++YPA+DVLA++SR+   V   E+R+L + LR  ++ Y++   L  +G YQ G D+
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  407  GLDQAVDLVPRIYSAMRQDASAPPSADPFRE-LRDMLK  443
            + D+A+D  P I + +RQ      +++ + E L+++L 
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1289) fliI in NC_013892


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  242 bits (904),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 167/347 (49%), Positives = 239/347 (69%), Gaps = 3/347 (0%)

Query  107  RRLPLGTELLGRVLDGSGRPLDGFPAPDTGYRALLTTPPINPLQRTPISDVLDVGVRAIN  166
            +++P+G  LLGRV+DG GRPLDG   P+   +   + PP  ++ R PI++ L  G+RAI+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAID  147

Query  167  SLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGVE  226
            S+ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  227  GLarsvvvaapadvspLLRMQGASYATRIAEDFRDRGKHVLLIMDSLTRYSMAQREIALA  286
               R V+V A +D ++L R+++   AT IAE FRD GK+V+L+ DSLTRY+ A REIALA
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  287  IGEPPATKGYPPSVFAKLPALVERAGNGVSDGGSITAFYTVLTEGDDQQDPIADSARAIL  346
             GE + +  YPP+VF+ LP L+ER+G G  + GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  347  DGHIVLSRSLAESGHYPAIDIEASISRAMTSLIDNDHYRRVQQFKQLLASYQRNRDLINV  406
            DGHIVLSR LAE GHYPAID+ A++SR    +  ++H +    +++ LA YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  407  GAYAAGSDPLLDRAIQLYPHMAQFLQQGMSERSEYDAACIQLQQLLP  453
            G Y  G D   D+AI+ YP++  FL+Q+  E    +    +L+Q+L 
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1290) fliI in NC_021884


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  242 bits (904),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 177/380 (47%), Positives = 256/380 (68%), Gaps = 17/380 (4%)

Query  77   AEVVGFAGERLFLMPTTAVAGVLPGARVWPLESAPVADPLAGAKRLPVGWEMLGRVVDAS  136
            AEVVG+ G + +L P T+ AG         L+ +    +L    ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  137  GRPLD--NLGPLASKVDAPLTAPSINPLDREPIHHVLDVGVRAINGLLTVGRGQRMGLFA  194
            GRPLD  +L  +  K   ++ +P+   + R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  195  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  254
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  255  pLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  314
            +L R+++   ATT+AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  315  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRSLAEAGH  374
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  375  YPAIDIEASISRAMTALIDDAHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAI  434
            YPAID+ A++SR    +  + H +    +++ L+ YQ    LI +G Y  G D++ D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  435  ALYPRIESFLQQGFRE-CAP  453
              YP I +FL+Q+  E C+P
Sbjct  401  DTYPDICTFLRQSKDEVCGP  420

1291) MYA_2826 in NC_017920


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  242 bits (904),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 185/399 (47%), Positives = 265/399 (67%), Gaps = 23/399 (5%)

Query  97   VGAECTIELPPGSTLPYAQAEVVGFSGERLFLMPTTDVAGVLPGARVWPLEAAPVADPLA  156
            +G  C I   PG  L    AEVVG++G + +L P T  AG+  G +V          +L 
Sbjct  42   MGELCCIK--PGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQV---------MALR  86

Query  157  GAKRLPVGWEMLGRVVDASGRPLDG--LGPLAAKVDAPLSAPSINPLDREPIHHVLDVGV  214
               ++PVG  +LGRV+D+ GRPLDG  L  +  K   ++++P+   + R+PI + L  G+
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGI  143

Query  215  RAINGLLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQI  274
            RAI+++ T G GQR+G+F+++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  
Sbjct  144  RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFT  203

Query  275  LGEDGLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQRE  334
            L+E+   R V+V A +D ++L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A RE
Sbjct  204  LSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAARE  263

Query  335  IALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSA  394
            IALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  
Sbjct  264  IALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEV  321

Query  395  RAILDGHIVLSRSLAEAGHYPAIDIEASISRAMTALIDEGHLDRVRQFKQMLSRYQRNRD  454
            R++LDGHIVLSR LAE GHYPAID+ A++SR    +  + H +    +++ L+ YQ    
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  455  LIAVGAYAPGRDAQLDRAIALYPRIEAFLQQGFRE-CAP  492
            LI +G Y  G D++ D+AI  YP I +FL+Q+  E C+P
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

1292) fliI in NC_021173


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  242 bits (903),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 178/380 (47%), Positives = 256/380 (68%), Gaps = 17/380 (4%)

Query  130  AEVVGFAGERLFLMPTTAVAGVLPGARVWPLESAPVADPLAGAKRLPVGWEMLGRVVDAS  189
            AEVVG+ G + +L P T+ AG         L+ +    +L    ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  190  GRPLD--NLGPLASKVDAPLTAPSINPLDREPIHHVLDVGVRAINGLLTVGRGQRMGLFA  247
            GRPLD  +L  +  K   ++ +P+   + R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  248  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  307
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  308  pLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  367
            +L R+++   ATT+AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  368  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRSLAEAGH  427
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  428  YPAIDIEASISRAMTALIDDAHLERVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAI  487
            YPAID+ A++SR    +  + H +    +++ L+ YQ    LI +G Y  G D++ D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  488  ALYPRIESFLQQGFRE-CAP  506
              YP I +FL+Q+  E C+P
Sbjct  401  DTYPDICTFLRQSKDEVCGP  420

1293) Bcep1808_3152 in NC_009256


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  242 bits (903),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 185/399 (47%), Positives = 265/399 (67%), Gaps = 23/399 (5%)

Query  96   VGAECTIELPPGSTLPYAQAEVVGFSGERLFLMPTTDVAGVLPGARVWPLEAAPVADPLA  155
            +G  C I   PG  L    AEVVG++G + +L P T  AG+  G +V          +L 
Sbjct  42   MGELCCIK--PGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQV---------MALR  86

Query  156  GAKRLPVGWEMLGRVVDASGRPLDG--LGPLAAKVDAPLSAPSINPLDREPIHHVLDVGV  213
               ++PVG  +LGRV+D+ GRPLDG  L  +  K   ++++P+   + R+PI + L  G+
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGI  143

Query  214  RAINGLLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQI  273
            RAI+++ T G GQR+G+F+++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  
Sbjct  144  RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFT  203

Query  274  LGEDGLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQRE  333
            L+E+   R V+V A +D ++L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A RE
Sbjct  204  LSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAARE  263

Query  334  IALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSA  393
            IALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  
Sbjct  264  IALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEV  321

Query  394  RAILDGHIVLSRSLAEAGHYPAIDIEASISRAMTALIDEGHLDRVRQFKQMLSRYQRNRD  453
            R++LDGHIVLSR LAE GHYPAID+ A++SR    +  + H +    +++ L+ YQ    
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  454  LIAVGAYAPGRDAQLDRAIALYPRIEAFLQQGFRE-CAP  491
            LI +G Y  G D++ D+AI  YP I +FL+Q+  E C+P
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

1294) fliI in NC_004545


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  242 bits (903),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 146/329 (45%), Positives = 223/329 (68%), Gaps = 3/329 (0%)

Query  108  NKLPVCDKLLGRIVDGLGKPLDNFSKIDSKYNVSLTNVSINPLHREPVTHVLDTGIRSIN  167
            +++PV + LLGR++DG+G+PLD    +          ++  ++ R+P+T+ L TGIR+I+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAID  147

Query  168  GLLTIGRGQKIGLFASSGLGKSVLLGMMTRYTQADIVILSLIGERGREVKEFIDSVLTET  227
            ++ T G GQ++G+F+++G+GKS LL+M+    +AD  +L LIGERGREV+EFID  L+E 
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  228  VLSRSIVISAPSESSVLMQTRGAIYAMRIAEYFRDKNFHVLLIMDSLTRYAMAHREISLS  287
               R +++ A S+ + L + R+ + A  IAE+FRD+  +V+L+ DSLTRYA A REI+L+
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  288  IGELPVSKGYPPSVFSKLFSLIERAGNGKINSGSITAFFTVLTEEEERYDPISESARSIL  347
             GE +VS  YPP+VFS L  L+ER+G G  + GSITAF+TVL E ++  +P+++  RS+L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  348  DGHIILSREYAESGHYPAINIENSISRVMPNIVDSSHYSFACHFKKIVSLYQRNRDLINV  407
            DGHI+LSR  AE GHYPAI++  ++SRV P +    H  +A  +++ ++LYQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  408  GAYISGTDPDLDMAITLIPKLNKFLQQGM  436
            G Y  G D D D AI   P +  FL+Q+ 
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

1295) MU9_32 in NC_020418


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  242 bits (902),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 172/403 (43%), Positives = 265/403 (66%), Gaps = 17/403 (4%)

Query  20   LEAPLPDVFIGEICLLWQDVTC-RVLLGRAQVVGFNEHNTLLSLIGQAAGLTLTTVIAPT  78
            L+A LP+VF+GE+C       C +     A+VVG+N  ++LLS +  +AGL     + + 
Sbjct  33   LNAWLPGVFMGELC-------CIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMAL  85

Query  79   GSAVTLTFTPQIPGSVIDPSGNTLA--RLSEITEPDNRSIIRPVSGEAPDVLSRQRITEI  136
                 +     + G VID  G  L    L+E+   D  ++       +P  + RQ IT+ 
Sbjct  86   RRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM-------PPPAMVRQPITQP  138

Query  137  LPTGVKAIDALLTCGKGQRLGIFAGAGCGKTVLMNMLIEHAQADIFVIALIGERGREVTE  196
            L TG++AID++ TCG GQR+GIF+++G GK+ L+ ML + ++AD  V+ LIGERGREV E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  197  LIDELRNSPQAAKCILVCSTSDKPAVDRCNAALVATSLAEYYRDEGKEVILFVDSLTRYG  256
            +ID   +     +C++V +TSD+PA++R  A +VAT++AE++RD+GK V+L+ DSLTRY+
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  257  RALRDVALSAGEVPVRLGYPASVFEQLPALLERPGATKTGVITAFYTVLLDSENEPDGFG  316
            RA R++AL+AGE +V   YP++VF  LP LLER G    G ITAFYTVL+++++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  317  DEVRSILDGHIYLSRRLAMQNHYPAIDIPASISRVMSQIVSPQHLAAAGHFRTLLAKQNE  376
            DEVRS+LDGHI LSRRLA + HYPAID+ A++SRV + + S +H   A+ +R  LA  +E
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  377  LKLLVELGEYKPRLNAENDKAVELTLPMRHFLCQSPAESVAAD  419
            + LL+ +GEY+  ++++ DKA++    +  FL QS  E  +++
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

1296) fliI in NC_007434


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  242 bits (902),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 177/380 (47%), Positives = 256/380 (68%), Gaps = 17/380 (4%)

Query  133  AEVVGFAGERLFLMPTTAVAGVLPGARVWPLESAPVADPLAGAKRLPVGWEMLGRVVDAS  192
            AEVVG+ G + +L P T+ AG         L+ +    +L    ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  193  GRPLD--NLGPLASKVDAPLTAPSINPLDREPIHHVLDVGVRAINGLLTVGRGQRMGLFA  250
            GRPLD  +L  +  K   ++ +P+   + R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  251  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  310
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  311  pLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  370
            +L R+++   ATT+AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  371  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRSLAEAGH  430
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  431  YPAIDIEASISRAMTALIDDAHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAI  490
            YPAID+ A++SR    +  + H +    +++ L+ YQ    LI +G Y  G D++ D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  491  ALYPRIESFLQQGFRE-CAP  509
              YP I +FL+Q+  E C+P
Sbjct  401  DTYPDICTFLRQSKDEVCGP  420

1297) fliI in NC_010506


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (901),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 187/394 (48%), Positives = 274/394 (70%), Gaps = 8/394 (2%)

Query  47   IGSLCSIETLAGELVAEVIGFDDELLYLMPIEELRGVLPGAKVTPLGEQSGLNVGLSLLG  106
            +G LC I   +GE +AEV+G+++    L P+    G+  G +V +L  +  + VG +LLG
Sbjct  42   MGELCCIK--PGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVldgnglpldglgrlQTDQKAPRHAQSINPLSRRAITEPLDVGVRAINAMLTVGKGQRM  166
            RV+DG G PLDG    +   K   +A +  ++ R++IT+PL  G+RAI+++ T G GQR+
Sbjct  100  RVIDGFGRPLDGRELPEVCWKD-YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  167  GLFAGSGVGKSVLLGMMTRGTTADvivvglvgergrevkeFIEEILGDEGRARSVVVAAP  226
            G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L++E R R V+V A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  227  ADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKGYP  286
            +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  287  PSVFAKLPKLVERAGNGGSGQGSITAFYTVLTEGDDLQDPIADAARAILDGHIVLSRQLA  346
            P+VF+ LP+L+ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGHIVLSR+LA
Sbjct  279  PGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  347  DSGHYPAIDIEASISRVAPMVISPEHLEAMRRVKQVYSLYQQNRDLISIGAYTQGSDPRI  406
            + GHYPAID+ A++SRV P+V S EH +    +++  +LYQ+   LI IG Y +G D   
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  407  DNSIRLQPAMNAFLRQTMKEAIRFDSSELMLSQL  440
            D++I   P + +FLRQ+  E     ++EL++ +L
Sbjct  397  DKAIDTYPDICTFLRQSKDEVC---GPELLIEKL  427

1298) fliI in NC_010505


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (901),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 174/386 (46%), Positives = 252/386 (66%), Gaps = 12/386 (3%)

Query  68   EVIGFQGDRALAMPFGSLEGVRRGCPAYVRD-ESAGAIRPSGAWLGRVIDALGRPVDGLG  126
            EV+G++G +AL  PF S  G++  C   V        +  + A LGRVID++GRP+DG  
Sbjct  56   EVVGINGSKALLSPFTSTAGLH--CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG--  111

Query  127  PLAQGPDVY--PLRADPPPAHARTRVGGPLDLGVRCINTFLTMCA-GQRMGIFAGSGVGK  183
               + P+V      A PPPA  R  +  PL  G+R I++ ++ C+ GQR+GIF+++GVGK
Sbjct  112  --RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDS-VATCGEGQRVGIFSAPGVGK  168

Query  184  SVLLSMLARYTAADVAVIGLVGERGREVQEFLQDDLGAAGLARSVVVVATSDEPALMRRN  243
            S LL+ML     AD  V+ L+GERGREV+EF++  L+     R V+VVATSD PAL R  
Sbjct  169  STLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR  228

Query  244  AAYVTLSVAEHFRDQGAKVLCMIDSITRFAMAQRDIGLAAGEPPTAKGYTPTVFSELPRL  303
            A +V+ ++AE FRD+G +V+ + DS+TR+A A R+I+LAAGE + +  Y P VFS LPRL
Sbjct  229  ALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRL  288

Query  304  LERAGPGVGQGTISALFTVLVEGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVL  363
            LER+G G  +G+I+A++TVLVEGDD NEP+AD VR++LDGHIV+ R +AERG+YPAI+VL
Sbjct  289  LERTGMG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  364  RSVSRTMPRSCDPAYLPVVRRARRLLSTYADMEELIRLGAYRAGSSQEVDEAVALMPHLE  423
             ++SR  P         +    RR L+ Y ++E LIR+G Y+ G   + D A+   P++ 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  424  AFLGQGKEEATSIGDGYARLSEIVGG  449
            +FL Q+K+E  +      +L +I+  
Sbjct  408  TFLRQSKDEVCGPELLIEKLHQILTE  433

1299) CtCNB1_0461 in NC_013446


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (901),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 191/433 (45%), Positives = 278/433 (65%), Gaps = 28/433 (6%)

Query  5    QQFMSQARARYAEPVPLECQ-GRLTRLTGMVLEASGLRVPVGAQCHIHQHGQEPVLAEVV  63
            +++M + R +Y+ P    C+ GR+  +++ +L+A    V +G  C I + G+E  LAEVV
Sbjct  3    NELMQRLRLKYPPPDGY-CRWGRIQDVSATLLNAWLPGVFMGELCCI-KPGEE--LAEVV  58

Query  64   GFAGERAFLMPAGDIQGLSSGAMVTPAAPFVPVPQLGVVETEKVSQTVGVLRLPMGDGLL  123
            G+ G +A+L P     GL  G  V           +++   ++V         P+G++LL
Sbjct  59   GINGSKALLSPFTSTAGLHCGQQV-----------MALRRRHQV---------PVGEALL  98

Query  124  GRVVDSQGTPLDHAGELGSVVPEVLDRNPINAMDRDPVRESLDTGVKALNALLTVGRGQR  183
            GRV+D+ G PLD + EL  V     D  P  AM R+P+ ++L TG++A++++ T G GQR
Sbjct  99   GRVIDGFGRPLD-GRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  184  LGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKEFVEDILGAQDRSRavvvaa  243
            +G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EF++  L+ + R R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  244  padappLLRMQGASYATAIAEHFRDKGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGY  303
             +D P+L R+++   AT+IAE FRD+GK+V+LL DSLTRYA A REIALA GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  304  PPSCFAKLPALVERSGNGLHGVGSITAFYTVLSEGDDQQDPIADAARAILDGHVVLSRAL  363
            PP+ F+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR L
Sbjct  278  PPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  364  AETGHYPAIDIEQSASRVMHNVVSREHFELARRFRAVYSRYQKGRDLVQVGAYVPGSDPQ  423
            AE GHYPAID+  + SRV   V S+EH +LA  +R   + YQ    L+++G Y  G D +
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  424  LDEAIALQPAMTG  436
             D AI   P +  
Sbjct  396  TDKAIDTYPDICT  408

1300) Theam_1448 in NC_014926


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (901),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 177/412 (43%), Positives = 284/412 (69%), Gaps = 7/412 (1%)

Query  17   GQVTGVKGEVIEAKLPGVCIGDFCTVD-GKLPAEVVGFKEGKALLMAYSDTDGITTGNPV  75
            G++ +V + +++A LPGV +G++C +  G   AEVVG++ +KALL +++ T G+  G+ V
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQV  82

Query  76   EVKLSGLKLGVSDELLGAVIDPFGKVLNGKEFTPTDFVPLKPDPVNPMERERIREPLDLG  135
                   ++ V++ LLG VID FG+ L+G+E+         + P  +M R+ I +PL  G
Sbjct  83   MALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTG  142

Query  136  IRVINGLLTVGRGQRLGVFAGAGVGKSTLLGMVARYTEADVTVVALIGERGREVREFLED  195
            IR I+++ T G GQR+G+F+++GVGKSTLL+M+    +AD  V+ LIGERGREVREF++ 
Sbjct  143  IRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDF  202

Query  196  ALGDGI-NRSVVVVATSDMPPLakvraayaafavaeyfsarGKKVLLLLDSLTRFAMAQR  254
            +L++   +R V+VVATSD P+L +VRA + A ++AE+F   GK+V+LL DSLTR+A A R
Sbjct  203  TLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAR  262

Query  255  EIGLSVGEPPTSKGYTPSVFSAMARLVERAGNFGSGGSITGIFTVLVEGDDISLDPVADA  314
            EI+L+ GE + S  Y P+VFSA++RL+ER+G  G  GSIT+++TVLVEGDD++ +P+AD 
Sbjct  263  EIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMN-EPLADE  320

Query  315  AVGLLDGHIVLSREMANRRLFPAVDVLKSISRLTPQIVPEEILTAQSVIFELESIYRENS  374
              +LLDGHIVLSR +A+R  +PA+DVL ++SR+ P + ++E     +++    ++Y+E  
Sbjct  321  VRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVE  380

Query  375  DLIQLGLYKKGTSPLIDLAIWAHSRLEGYIRQGINQRVN---LKESFEQLLS  423
             LI++G Y++G     D AI + + +  ++RQ+ ++      L E ++Q+L+
Sbjct  381  LLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1301) Ajs_3804 in NC_008782


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (900),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 186/399 (47%), Positives = 258/399 (65%), Gaps = 26/399 (6%)

Query  37   VGSQCQVQMNGQEPVLAEVVGFAGDTAYLMPAGDIHGLSSGASVMPAPAYVPALHlgaap  96
            +G  C ++  G+E  LAEVVG+ G  A L P     GL  G  VM       AL+     
Sbjct  42   MGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCGQQVM-------ALRRRHQV  91

Query  97   veeagagvgalllpMGDGLLGRVVDSQGNPLDHAGPLAQVTAQPMDRRPINAMERDPVRE  156
                          +G++LLGRV+D+ G PLD +  L++V  +  D  P  AM R+P+ +
Sbjct  92   P-------------VGEALLGRVIDGFGRPLD-GRELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  157  PLDTGVRAINALLTVGRGQRLGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVK  216
            PL TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  217  EFVEDILGVQDRGRavvvaapadappLLRMQGAAYATAIAEHFRDKGQHVLLLMDSLTRY  276
            EF++  L+ + R R V+V A +D P+L R+++   AT+IAE FRD+G++V+LL DSLTRY
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  277  AMAQREIALAIGEPPATKGYPPSCFAKLPALVERSGNGLNGVGSITAFYTVLSEGDDQQD  336
            A A REIALA GE + +  YPP+ F+ LP L+ER+G G    GSITAFYTVL EGDD ++
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNE  315

Query  337  PIADAARAILDGHIVLSRALAESGHYPAIDIEQSASRVMHNVVPRAHFELARGFRAVYSR  396
            P+AD  R++LDGHIVLSR LAE GHYPAID+  + SRV   V ++ H +LA  +R   + 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  397  YQKSRDLIQVGAYMSGSDPQLDEAIRLQPGMTAFLQQSM  435
            YQ    LI++G Y  G D + D AI   P++ +FL+QS 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

1302) fliI in NC_006348


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (901),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 177/380 (47%), Positives = 256/380 (68%), Gaps = 17/380 (4%)

Query  130  AEVVGFAGERLFLMPTTAVAGVLPGARVWPLESAPVADPLAGAKRLPVGWEMLGRVVDAS  189
            AEVVG+ G + +L P T+ AG         L+ +    +L    ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  190  GRPLD--NLGPLASKVDAPLTAPSINPLDREPIHHVLDVGVRAINGLLTVGRGQRMGLFA  247
            GRPLD  +L  +  K   ++ +P+   + R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  248  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  307
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  308  pLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  367
            +L R+++   ATT+AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  368  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRSLAEAGH  427
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  428  YPAIDIEASISRAMTALIDDAHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAI  487
            YPAID+ A++SR    +  + H +    +++ L+ YQ    LI +G Y  G D++ D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  488  ALYPRIESFLQQGFRE-CAP  506
              YP I +FL+Q+  E C+P
Sbjct  401  DTYPDICTFLRQSKDEVCGP  420

1303) fliI in NC_008836


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (901),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 177/380 (47%), Positives = 256/380 (68%), Gaps = 17/380 (4%)

Query  130  AEVVGFAGERLFLMPTTAVAGVLPGARVWPLESAPVADPLAGAKRLPVGWEMLGRVVDAS  189
            AEVVG+ G + +L P T+ AG         L+ +    +L    ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  190  GRPLD--NLGPLASKVDAPLTAPSINPLDREPIHHVLDVGVRAINGLLTVGRGQRMGLFA  247
            GRPLD  +L  +  K   ++ +P+   + R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  248  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  307
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  308  pLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  367
            +L R+++   ATT+AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  368  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRSLAEAGH  427
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  428  YPAIDIEASISRAMTALIDDAHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAI  487
            YPAID+ A++SR    +  + H +    +++ L+ YQ    LI +G Y  G D++ D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  488  ALYPRIESFLQQGFRE-CAP  506
              YP I +FL+Q+  E C+P
Sbjct  401  DTYPDICTFLRQSKDEVCGP  420

1304) fliI in NC_009080


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (901),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 177/380 (47%), Positives = 256/380 (68%), Gaps = 17/380 (4%)

Query  130  AEVVGFAGERLFLMPTTAVAGVLPGARVWPLESAPVADPLAGAKRLPVGWEMLGRVVDAS  189
            AEVVG+ G + +L P T+ AG         L+ +    +L    ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  190  GRPLD--NLGPLASKVDAPLTAPSINPLDREPIHHVLDVGVRAINGLLTVGRGQRMGLFA  247
            GRPLD  +L  +  K   ++ +P+   + R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  248  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  307
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  308  pLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  367
            +L R+++   ATT+AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  368  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRSLAEAGH  427
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  428  YPAIDIEASISRAMTALIDDAHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAI  487
            YPAID+ A++SR    +  + H +    +++ L+ YQ    LI +G Y  G D++ D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  488  ALYPRIESFLQQGFRE-CAP  506
              YP I +FL+Q+  E C+P
Sbjct  401  DTYPDICTFLRQSKDEVCGP  420

1305) fliI in NC_008785


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (901),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 177/380 (47%), Positives = 256/380 (68%), Gaps = 17/380 (4%)

Query  130  AEVVGFAGERLFLMPTTAVAGVLPGARVWPLESAPVADPLAGAKRLPVGWEMLGRVVDAS  189
            AEVVG+ G + +L P T+ AG         L+ +    +L    ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  190  GRPLD--NLGPLASKVDAPLTAPSINPLDREPIHHVLDVGVRAINGLLTVGRGQRMGLFA  247
            GRPLD  +L  +  K   ++ +P+   + R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  248  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  307
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  308  pLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  367
            +L R+++   ATT+AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  368  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRSLAEAGH  427
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  428  YPAIDIEASISRAMTALIDDAHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAI  487
            YPAID+ A++SR    +  + H +    +++ L+ YQ    LI +G Y  G D++ D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  488  ALYPRIESFLQQGFRE-CAP  506
              YP I +FL+Q+  E C+P
Sbjct  401  DTYPDICTFLRQSKDEVCGP  420

1306) fliI in NC_017831


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (901),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 177/380 (47%), Positives = 256/380 (68%), Gaps = 17/380 (4%)

Query  130  AEVVGFAGERLFLMPTTAVAGVLPGARVWPLESAPVADPLAGAKRLPVGWEMLGRVVDAS  189
            AEVVG+ G + +L P T+ AG         L+ +    +L    ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  190  GRPLD--NLGPLASKVDAPLTAPSINPLDREPIHHVLDVGVRAINGLLTVGRGQRMGLFA  247
            GRPLD  +L  +  K   ++ +P+   + R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  248  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  307
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  308  pLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  367
            +L R+++   ATT+AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  368  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRSLAEAGH  427
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  428  YPAIDIEASISRAMTALIDDAHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAI  487
            YPAID+ A++SR    +  + H +    +++ L+ YQ    LI +G Y  G D++ D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  488  ALYPRIESFLQQGFRE-CAP  506
              YP I +FL+Q+  E C+P
Sbjct  401  DTYPDICTFLRQSKDEVCGP  420

1307) fliI in NC_009076


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (901),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 177/380 (47%), Positives = 256/380 (68%), Gaps = 17/380 (4%)

Query  130  AEVVGFAGERLFLMPTTAVAGVLPGARVWPLESAPVADPLAGAKRLPVGWEMLGRVVDAS  189
            AEVVG+ G + +L P T+ AG         L+ +    +L    ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  190  GRPLD--NLGPLASKVDAPLTAPSINPLDREPIHHVLDVGVRAINGLLTVGRGQRMGLFA  247
            GRPLD  +L  +  K   ++ +P+   + R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  248  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  307
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  308  pLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  367
            +L R+++   ATT+AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  368  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRSLAEAGH  427
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  428  YPAIDIEASISRAMTALIDDAHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAI  487
            YPAID+ A++SR    +  + H +    +++ L+ YQ    LI +G Y  G D++ D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  488  ALYPRIESFLQQGFRE-CAP  506
              YP I +FL+Q+  E C+P
Sbjct  401  DTYPDICTFLRQSKDEVCGP  420

1308) fliI in NC_009074


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (901),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 177/380 (47%), Positives = 256/380 (68%), Gaps = 17/380 (4%)

Query  130  AEVVGFAGERLFLMPTTAVAGVLPGARVWPLESAPVADPLAGAKRLPVGWEMLGRVVDAS  189
            AEVVG+ G + +L P T+ AG         L+ +    +L    ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  190  GRPLD--NLGPLASKVDAPLTAPSINPLDREPIHHVLDVGVRAINGLLTVGRGQRMGLFA  247
            GRPLD  +L  +  K   ++ +P+   + R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  248  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  307
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  308  pLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  367
            +L R+++   ATT+AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  368  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRSLAEAGH  427
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  428  YPAIDIEASISRAMTALIDDAHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAI  487
            YPAID+ A++SR    +  + H +    +++ L+ YQ    LI +G Y  G D++ D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  488  ALYPRIESFLQQGFRE-CAP  506
              YP I +FL+Q+  E C+P
Sbjct  401  DTYPDICTFLRQSKDEVCGP  420

1309) BPC006_I0216 in NC_018527


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (901),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 177/380 (47%), Positives = 256/380 (68%), Gaps = 17/380 (4%)

Query  130  AEVVGFAGERLFLMPTTAVAGVLPGARVWPLESAPVADPLAGAKRLPVGWEMLGRVVDAS  189
            AEVVG+ G + +L P T+ AG         L+ +    +L    ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  190  GRPLD--NLGPLASKVDAPLTAPSINPLDREPIHHVLDVGVRAINGLLTVGRGQRMGLFA  247
            GRPLD  +L  +  K   ++ +P+   + R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  248  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  307
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  308  pLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  367
            +L R+++   ATT+AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  368  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRSLAEAGH  427
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  428  YPAIDIEASISRAMTALIDDAHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAI  487
            YPAID+ A++SR    +  + H +    +++ L+ YQ    LI +G Y  G D++ D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  488  ALYPRIESFLQQGFRE-CAP  506
              YP I +FL+Q+  E C+P
Sbjct  401  DTYPDICTFLRQSKDEVCGP  420

1310) fliI in NC_006350


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (901),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 177/380 (47%), Positives = 256/380 (68%), Gaps = 17/380 (4%)

Query  130  AEVVGFAGERLFLMPTTAVAGVLPGARVWPLESAPVADPLAGAKRLPVGWEMLGRVVDAS  189
            AEVVG+ G + +L P T+ AG         L+ +    +L    ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  190  GRPLD--NLGPLASKVDAPLTAPSINPLDREPIHHVLDVGVRAINGLLTVGRGQRMGLFA  247
            GRPLD  +L  +  K   ++ +P+   + R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  248  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  307
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  308  pLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  367
            +L R+++   ATT+AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  368  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRSLAEAGH  427
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  428  YPAIDIEASISRAMTALIDDAHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAI  487
            YPAID+ A++SR    +  + H +    +++ L+ YQ    LI +G Y  G D++ D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  488  ALYPRIESFLQQGFRE-CAP  506
              YP I +FL+Q+  E C+P
Sbjct  401  DTYPDICTFLRQSKDEVCGP  420

1311) fliI in NC_012695


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (901),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 177/380 (47%), Positives = 256/380 (68%), Gaps = 17/380 (4%)

Query  130  AEVVGFAGERLFLMPTTAVAGVLPGARVWPLESAPVADPLAGAKRLPVGWEMLGRVVDAS  189
            AEVVG+ G + +L P T+ AG         L+ +    +L    ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAG---------LHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  190  GRPLD--NLGPLASKVDAPLTAPSINPLDREPIHHVLDVGVRAINGLLTVGRGQRMGLFA  247
            GRPLD  +L  +  K   ++ +P+   + R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  248  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  307
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  308  pLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  367
            +L R+++   ATT+AE+FRD+GK+V+LL DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  368  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRSLAEAGH  427
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  428  YPAIDIEASISRAMTALIDDAHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAI  487
            YPAID+ A++SR    +  + H +    +++ L+ YQ    LI +G Y  G D++ D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  488  ALYPRIESFLQQGFRE-CAP  506
              YP I +FL+Q+  E C+P
Sbjct  401  DTYPDICTFLRQSKDEVCGP  420

1312) fliI in NC_022000


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (899),  Expect = 7e-65, Method: Compositional matrix adjust.
 Identities = 185/387 (48%), Positives = 261/387 (68%), Gaps = 9/387 (2%)

Query  67   SEVVGFNGSQMLLMPLQEVEGLTPGARVYAQSIPGREGEGRQLPLGDALLGRVldgsgdp  126
            +EVVG+NGS+ LL P+    GL  G +V   ++  R    +Q+P+G+ALLGRV+DG G P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV--MALRRR----HQVPVGEALLGRVIDGFGRP  108

Query  127  ldglpppdTSYRAPLITPPINPLQRTPITDVLDVGVRAINALLTVGRGQRMGLFAGSGVG  186
            LDG   P+   +     PP  ++ R PIT+ L  G+RAI+++ T G GQR+G+F+++GVG
Sbjct  109  LDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  187  KSVLLGMMARFTQADVIVVGLIGERGREVKDFIENILGKEGLarsvvvaapadvspLLRM  246
            KS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E   R V+V A +D ++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  247  QGASYATRIAEDFRDRGKHVLLIMDSLTRYSMAQREIALAVGEPPATKGYPPSVFAKLPA  306
            ++   AT IAE FRD GK+V+L+ DSLTRY+ A REIALA GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  307  LVERAGNGVDGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRSLAESGHYPAID  366
            L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR LAE GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  367  IEASISRAMTSLIDKTHYRRVQVFKQLLSSYQRNRDLINVGAYATGSDPMLDKAIALYPS  426
            + A++SR    +    H +   ++++ L+ YQ    LI +G Y  G D   DKAI  YP 
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  427  LAKFLQQDIQEQCSYQHACEQLNQLIT  453
            +  FL+Q  +E C+ +   E+L+Q++T
Sbjct  406  ICTFLRQSKDEVCGPELLIEKLHQILT  432

1313) Bcenmc03_4658 in NC_010515


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (899),  Expect = 7e-65, Method: Compositional matrix adjust.
 Identities = 167/377 (45%), Positives = 254/377 (68%), Gaps = 4/377 (1%)

Query  58   VVGFREGVSYLMPFRPAEGLAAGARVFGDDGARMLSIGAAWRGRIVDGLGEPIDDRG-PL  116
            VVG+  + + L PF ++ GL  G +V +    + +++G A  GR++DG+G P+D+R  P 
Sbjct  57   VVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPE  116

Query  117  VGDAVLDLAPPRVNPLRKQPVEGVMDVGVRAIDGMLTLGRGQRVGLFAGSGVGKSVLLGM  176
            V     D  PP   ++ +QP+   +  G+RAID++ T G GQRVG+F+++GVGKS LL+M
Sbjct  117  VCWKDYDAMPP--PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAM  174

Query  177  IARQTAADVVVVGMIGERGREVREFIEHSLGPEGLSKAIVVVAPADESPLMRLMATELCH  236
            +     AD  V+ +IGERGREVREFI+ +L+ E   + ++VVA +D ++L R+ A  +  
Sbjct  175  LCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVAT  234

Query  237  AIATHFRDAGNDVLLMIDSLTRYAMAQREIALALGEPPATRGYPPSVFGMLPRLVERAGN  296
            +IA  FRD G+ V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LPRL+ER+G 
Sbjct  235  TIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM  294

Query  297  GEGVGSMSAIYTVLAEGDDEQDPVVDTARAILDGHIMLSRDLASQGHYPAIDVLRSVSRC  356
            GE  GS++A+YTVL EGDD ++P+ D  R++LDGHI+LSR LA +GHYPAIDVL ++SR 
Sbjct  295  GEK-GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRV  353

Query  357  MSLVAPREQIDAVHKVKQMMSRYANVRDLIPLGGYVAGADLVTDHAVKMHDRIEAFLCQA  416
             ++V+++E+ +    +++ ++ Y +V  LI +G Y  G D  TD A+     I +FL Q+
Sbjct  354  FPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

Query  417  QDEVAPRQATLDILTEI  433
            +DEV   +  ++ L +I
Sbjct  414  KDEVCGPELLIEKLHQI  430

1314) fliI in NC_021500


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (898),  Expect = 9e-65, Method: Compositional matrix adjust.
 Identities = 180/390 (47%), Positives = 259/390 (67%), Gaps = 20/390 (5%)

Query  48   LGATCIIERQDGVETREVECEVVGFNGQRLFLMPLEEVEGILPGARVYARSVLGDGLQSG  107
            +G  C I   + +       EVVG+NG + +L P+    G+  G +V A       L+  
Sbjct  42   MGELCCIKPGEELA------EVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRR  88

Query  108  KQLPLGPALLGRVldgggkpldglpAPETG--ETGALVTQPFNPLQRTPIEHVLDTGVRA  165
             Q+P+G ALLGRV+DG G+PLDG   PE    + +A+   P  ++ R PI + L TG+RA
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRA  145

Query  166  INALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILG  225
            I+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+
Sbjct  146  IDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLS  205

Query  226  AEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIA  285
             E R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLTRYA A REIA
Sbjct  206  EETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIA  265

Query  286  LAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARA  345
            LA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R+
Sbjct  266  LAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRS  323

Query  346  ILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITEQHYARVRNFKQLLSSFQRNRDLV  405
            +LDGHIVLSRRLAE GHYPAID+ A++SR    + +++H      +++ L+ +Q    L+
Sbjct  324  LLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLI  383

Query  406  SVGAYARGSDPMLDKAIALWPHLEAFLQQG  435
             +G Y RG D   DKAI   P++ +FL+Q+
Sbjct  384  RIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1315) fliI in NC_007954


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (898),  Expect = 9e-65, Method: Compositional matrix adjust.
 Identities = 185/396 (47%), Positives = 275/396 (70%), Gaps = 12/396 (3%)

Query  47   VGSLCSIETMAGELIAEVVGFDDKLLYLMPIEELRGVLPGARVQPLGEQSGLNVGLSLLG  106
            +G LC I   +GE +AEVVG+++    L P+    G+  G +V +L  +  + VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVldgnglpldglgalnT--DQHASRHGPSINPLSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG    +    +  +   P+   + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGEHGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+E+ R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREVALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A RE+ALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRR  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRR
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIESSISRVAPMVISNEHLEAMRRVKQMYSMYQQNRDLISIGAYAQGSDP  404
            LA+ GHYPAID+ +++SRV P+V S+EH +    +++  ++YQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQGFKEAISFDDSQLMMSQI  440
              D+AI   P + +FLRQ+ K+ +   +++L++ ++
Sbjct  395  DTDKAIDTYPDICTFLRQS-KDEVC--GPELLIEKL  427

1316) Rahaq2_2552 in NC_016818


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (898),  Expect = 9e-65, Method: Compositional matrix adjust.
 Identities = 167/368 (46%), Positives = 239/368 (65%), Gaps = 9/368 (2%)

Query  67   SEVVGFNGQSLFLMPLEEVEGILPGARVYARIAADGQTAGKqlplgpqllgRVLDGSAKP  126
            +EVVG+NG   +L P+    G+  G +V A    +    G  L        RV+DG ++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG------RVIDGFGRP  108

Query  127  LDSLPPPDTGYRAALITPPFNPLQRTPITDVLDVGVRAINALLTVGRGQRMGLFAGSGVG  186
            LD+   P+   +     PP  ++ R PIT+ L  G+RAI+++ T G GQR+G+F+++GVG
Sbjct  109  LDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  187  KSVLLGMMARYTKADVIVVGLIGERGREVKDFIENILGDEGRARSVVIAAPADVSPLLRM  246
            KS LL+M+     AD  V+ LIGERGREV++FI+  L++E R R V++ A +D ++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  247  QGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPA  306
            ++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  307  LVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAESGHYPAID  366
            L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  367  IEASISRAMTSLIDDAQYGRVRNFKQLLSSYQRNRDLVSVGAYAAGSDPMLDRAIKLYPQ  426
            + A++SR    +  + +      +++ L+ YQ    L+ +G Y  G D   D+AI  YP+
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  427  MENFLQQD  434
            +  FL+Q 
Sbjct  406  ICTFLRQS  413

1317) flaC in NC_010645


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (899),  Expect = 9e-65, Method: Compositional matrix adjust.
 Identities = 191/431 (45%), Positives = 269/431 (63%), Gaps = 40/431 (9%)

Query  30   GRITRATGLVLHATGLRLP---VGAACRIEIARGHDLWADAEVVGFDGQTLYLMPQADIS  86
            GRI   ++ +L+A   +LP   +G  C I    G++L   AEVVG++G    L P +  +
Sbjct  23   GRIQDVSATLLNA---WLPGVFMGELCCIK--PGEEL---AEVVGINGSKALLSPFTSTA  74

Query  87   GLPPGARVMPAEPVVQRSVPLPRKAELNGNAKPQLGRHLPVGNALLGRVVDGAGRPLDDL  146
            GL  G +VM+          L R+            +++PVG+ALLGRV+DG GRPLD+ 
Sbjct  75   GLHCGQQVMA----------LRRR------------HQVPVGEALLGRVIDGFGRPLDG-  111

Query  147  GPLTGAELAPLAAQPINPLSRAPIDSVLDVGVRAINGLLTVGRGQRMGLFAGSGVGKSVL  206
              L         A P  ++ R PI   L  G+RAI+++ T G GQR+G+F+++GVGKS L
Sbjct  112  RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  207  LGMMARYTRADIIVVGLIGERGREVKEFIEHNLGPEGLarsvvvaapadvspLLRLQGAA  266
            L+M+     AD  V+ LIGERGREV+EFI+  L+ E   R V+V A +D ++L R+++  
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  267  YATRLAEHFRDQGLDVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPMLVER  326
             AT +AE FRD+G  V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  327  TGMGAPGPNGRAGSITAFYTVLAEGDDQQDPIADSARAILDGHVVLSRTLAEAGHYPAID  386
            TGMG        GSITAFYTVL EGDD ++P+AD  R++LDGH+VLSR LAE GHYPAID
Sbjct  292  TGMGE------KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  387  IEASISRAMTSLITPQQFNLVRRFKQMLSRYQRNRDLISVGAYVPGADPQLDEAIARYPR  446
            + A++SR    + + ++ +L   +++ L+ YQ    LI +G Y  G D + D AI  YP 
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  447  LEAFLQQEIGE  457
            + +FL+Q  +E
Sbjct  406  ICTFLRQSKDE  416

1318) fliI in NC_017368


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  241 bits (898),  Expect = 9e-65, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 254/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGVL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D + +      DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLYARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FETSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1319) Alide_3854 in NC_014910


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  240 bits (897),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 188/399 (48%), Positives = 261/399 (66%), Gaps = 26/399 (6%)

Query  49   VGAQCQVRMAGQEPVLAEVVGFAGDKAFLMPAGDIHGLSSGASVTPAAAYVPVPRLGGAG  108
            +G  C ++ +G+E  LAEVVG+ G KA+L P     GL  G  V      +++ R     
Sbjct  42   MGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV------MALRR----R  88

Query  109  HDPEAAGAGVLRLPMGDGLLGRVVDSQGQPLDHGGPLERVTALPMDRSPINAMERDPVRE  168
            H+          +P+G++LLGRV+D+ G+PLD G  L  V     D  P  AM R+P+ +
Sbjct  89   HQ----------VPVGEALLGRVIDGFGRPLD-GRELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  169  PLDTGVRAINALLTVGRGQRLGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVK  228
            PL TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  229  EFVEDILGETDRGRavvvaapadappLLRMQGAAYATAIAEHFRDQGRHVLLLMDSLTRY  288
            EF++  L+E  R R V+V A +D P+L R+++   AT+IAE FRD+G++V+LL DSLTRY
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  289  AMAQREIALAIGEPPATKGYPPSCFAKLPALVERSGNGLNGVGSITAFYTVLSEGDDQQD  348
            A A REIALA GE + +  YPP+ F+ LP L+ER+G G    GSITAFYTVL EGDD ++
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNE  315

Query  349  PIADAARAILDGHIVLSRALAESGHYPAIDIEQSASRVMHNVVSRSHFDMARGFRAIYSR  408
            P+AD  R++LDGHIVLSR LAE GHYPAID+  + SRV   V S+ H ++A  +R   + 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  409  YQKSRDLIQVGAYMSGSDPLLDEAIRLQPGMTAFLQQDM  447
            YQ    LI++G Y  G D   D AI   P++ +FL+Q  
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

1320) Alide2_4200 in NC_015422


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  240 bits (897),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 188/399 (48%), Positives = 261/399 (66%), Gaps = 26/399 (6%)

Query  49   VGAQCQVRMAGQEPVLAEVVGFAGDKAFLMPAGDIHGLSSGASVTPAAAYVPVPRLGGAG  108
            +G  C ++ +G+E  LAEVVG+ G KA+L P     GL  G  V      +++ R     
Sbjct  42   MGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCGQQV------MALRR----R  88

Query  109  HDPEAAGAGVLRLPMGDGLLGRVVDSQGQPLDHGGPLERVTALPMDRSPINAMERDPVRE  168
            H+          +P+G++LLGRV+D+ G+PLD G  L  V     D  P  AM R+P+ +
Sbjct  89   HQ----------VPVGEALLGRVIDGFGRPLD-GRELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  169  PLDTGVRAINALLTVGRGQRLGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVK  228
            PL TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  229  EFVEDILGETDRGRavvvaapadappLLRMQGAAYATAIAEHFRDQGRHVLLLMDSLTRY  288
            EF++  L+E  R R V+V A +D P+L R+++   AT+IAE FRD+G++V+LL DSLTRY
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  289  AMAQREIALAIGEPPATKGYPPSCFAKLPALVERSGNGLNGVGSITAFYTVLSEGDDQQD  348
            A A REIALA GE + +  YPP+ F+ LP L+ER+G G    GSITAFYTVL EGDD ++
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNE  315

Query  349  PIADAARAILDGHIVLSRALAESGHYPAIDIEQSASRVMHNVVSRSHFDMARGFRAIYSR  408
            P+AD  R++LDGHIVLSR LAE GHYPAID+  + SRV   V S+ H ++A  +R   + 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  409  YQKSRDLIQVGAYMSGSDPLLDEAIRLQPGMTAFLQQDM  447
            YQ    LI++G Y  G D   D AI   P++ +FL+Q  
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

1321) fliI in NC_015259


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  240 bits (896),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 174/369 (48%), Positives = 250/369 (68%), Gaps = 10/369 (2%)

Query  56   AEVVGFRDGHALCMPFAGLEGVRMGCKAVIAARESVVHPANAWLGRVINAMGEPIDGKGA  115
            AEVVG+ ++ AL  PF++  G++ G + +   R   V  ++A LGRVI++ G P+DG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-E  113

Query  116  LPGGETprrlrsapppaserarVGPPLDLGVRALNTFVTCCEGQRMGIFAGSGVGKSVLM  175
            LP     +   + PPPA  R  +  PL  G+RA+++  TC EGQR+GIF+++GVGKS L+
Sbjct  114  LPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  176  SMLARNTDCDVAVIGLIGERGREVQEFIEDDLGEAGLARSVVVVATSDESVLMRRQAAYL  235
            +ML    D D  V+ LIGERGREV+EFI+  L+E    R V+VVATSD + L R +A ++
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  236  AMTVAEHFRDEGAKVLCMMDSVTRFAMAQREIGLSIGEPPTSKGYTPTVFTELPRLLERA  295
            A T+AE FRD+G +V+ + DS+TR+A A REI+L+ GE + S  Y P VF+ LPRLLER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  296  GPGRVGSGSITGLFTVLVEGDNHNEPVADAVRGILDGHVVMERSIAERGRYPAINVLKSV  355
            G G    GSIT+++TVLVEGD+ NEP+AD VR++LDGH+V+ R +AERG+YPAI+VL ++
Sbjct  293  GMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  356  SRTMPRCVPE---PLVPVLRKARQLMATFSDMEELIRLGAYRRGSDPVVDEAIARHDALE  412
            SR  P   ++    L ++LR+    +A + ++E LIR+G Y+RG D   D AI     + 
Sbjct  351  SRVFPVVTSHEHRQLAAILRRR---LALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  413  GFLSQTKDE  421
             FL Q+KDE
Sbjct  408  TFLRQSKDE  416

1322) fliI in NC_010554


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  240 bits (897),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 185/387 (48%), Positives = 261/387 (68%), Gaps = 9/387 (2%)

Query  67   SEVVGFNGSQMLLMPLQEVEGLTPGARVYAQSIPGREGEGRQLPLGDALLGRVldgsgdp  126
            +EVVG+NGS+ LL P+    GL  G +V   ++  R    +Q+P+G+ALLGRV+DG G P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV--MALRRR----HQVPVGEALLGRVIDGFGRP  108

Query  127  ldglpppdTSYRAPLITPPINPLQRTPITDVLDVGVRAINALLTVGRGQRMGLFAGSGVG  186
            LDG   P+   +     PP  ++ R PIT+ L  G+RAI+++ T G GQR+G+F+++GVG
Sbjct  109  LDGRELPEVCWKDYDAMPP-PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  187  KSVLLGMMARFTQADVIVVGLIGERGREVKDFIENILGKEGLarsvvvaapadvspLLRM  246
            KS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E   R V+V A +D ++L R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  247  QGASYATRIAEDFRDRGKHVLLIMDSLTRYSMAQREIALAVGEPPATKGYPPSVFAKLPA  306
            ++   AT IAE FRD GK+V+L+ DSLTRY+ A REIALA GE + +  YPP+VF+ LP 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  307  LVERAGNGVDGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRSLAESGHYPAID  366
            L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR LAE GHYPAID
Sbjct  288  LLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  367  IEASISRAMTSLIDKTHYRRVQVFKQLLSSYQRNRDLINVGAYATGSDPMLDKAIALYPS  426
            + A++SR    +    H +   ++++ L+ YQ    LI +G Y  G D   DKAI  YP 
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  427  LAKFLQQDIQEQCSYQHACEQLNQLIT  453
            +  FL+Q  +E C+ +   E+L+Q++T
Sbjct  406  ICTFLRQSKDEVCGPELLIEKLHQILT  432

1323) Dtpsy_3078 in NC_011992


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  240 bits (897),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 186/399 (47%), Positives = 257/399 (65%), Gaps = 26/399 (6%)

Query  49   VGSQCQVQMNGQEPVLAEVVGFAGDTAYLMPAGDIHGLSSGASVMPAPAYVPALQlgaap  108
            +G  C ++  G+E  LAEVVG+ G  A L P     GL  G  VM       AL+     
Sbjct  42   MGELCCIK-PGEE--LAEVVGINGSKALLSPFTSTAGLHCGQQVM-------ALRRRHQV  91

Query  109  veeagagvgalllpMGDGLLGRVVDSQGNPLDHAGPLTQVTAQPMDRSPINAMERDPVRE  168
                          +G++LLGRV+D+ G PLD +  L +V  +  D  P  AM R+P+ +
Sbjct  92   P-------------VGEALLGRVIDGFGRPLD-GRELPEVCWKDYDAMPPPAMVRQPITQ  137

Query  169  PLDTGVRAINALLTVGRGQRLGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVK  228
            PL TG+RAI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+
Sbjct  138  PLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVR  197

Query  229  EFVEDILGVQDRGRavvvaapadappLLRMQGAAYATAIAEHFRDKGQHVLLLMDSLTRY  288
            EF++  L+ + R R V+V A +D P+L R+++   AT+IAE FRD+G++V+LL DSLTRY
Sbjct  198  EFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY  257

Query  289  AMAQREIALAIGEPPATKGYPPSCFAKLPALVERSGNGLNGVGSITAFYTVLSEGDDQQD  348
            A A REIALA GE + +  YPP+ F+ LP L+ER+G G    GSITAFYTVL EGDD ++
Sbjct  258  ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNE  315

Query  349  PIADAARAILDGHIVLSRALAESGHYPAIDIEQSASRVMHNVVPRAHFELARGFRAVYSR  408
            P+AD  R++LDGHIVLSR LAE GHYPAID+  + SRV   V ++ H +LA  +R   + 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  409  YQKSRDLIQVGAYMSGSDPQLDEAIRLQPGMTAFLQQSM  447
            YQ    LI++G Y  G D + D AI   P++ +FL+QS 
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

1324) fliI in NC_006087


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  240 bits (897),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 165/355 (47%), Positives = 242/355 (69%), Gaps = 3/355 (0%)

Query  71   PMTPAAGHSTGAGARFALRPPTVPTGRGLLGRVINGLGHPIDGKGPLDATSCLPLDNAVP  130
            P T++AG   G       R   VP G +LLGRVI+G+G+P+DG+    +  C    +A+P
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL--PEVCWKDYDAMP  126

Query  131  NP-LDRARIDTPLPLGVRALDTLIPVGRGQRLGLFAGSGVGKSSLLSMIARGTDADVFVL  189
             P + R  I  PL  G+RA+D++   G GQR+G+F+++GVGKS+LL+M+  + DAD  VL
Sbjct  127  PPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  190  ALIGERGREVREFLEDDLGADGLARSVVVVATSDEPalmrrraafaatriaESFRDNGAD  249
             LIGERGREVREF++  L+ +   R V+VVATSD PAL R RA F AT IAE FRDNG  
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  250  AMLMMDSLTRVAMAQREIGLSAGEPPATRGYPSSTFSTLASLLERAGTAKTGSITGLYTV  309
             +L+ DSLTR A A REI+L+AGE + +  YP++ FS+L+ LLER+G +  GSIT++YTV
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTV  306

Query  310  LVDGDDHNEPIADAARSILDGHVLLDRKLAINGHFPSIDVLGSISRLAGKICTPGQQAAA  369
            LV+GDD NEP+AD  RS+LDGH++L R+LA  GH+P+IDVL+++SR+   + +  ++  A
Sbjct  307  LVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLA  366

Query  370  TALRKVMAARRAAQDLLDVGAYKPGANPLVDAGVEHEDRIAAFLQQGMGEQTTAE  424
            + LR+ +A  +  + L+ +G Y+ G +   D +++    I +FL+Q+ +E   +E
Sbjct  367  AILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

1325) K750_01365 in NC_021217


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  240 bits (897),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 161/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+   
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD---  123

Query  123  PVITMPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
               +MP +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  124  ---AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLYARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1326) fliI in NC_021287


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  240 bits (896),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 173/373 (47%), Positives = 253/373 (68%), Gaps = 16/373 (4%)

Query  130  AEVVGFSGDKLFLMPTTEVAGLLPGARVYPLESAPINDPMAGAKRLPVGWEMLGRVVDAS  189
            AEVVG++G K +L P T  AGL  G +V +L             ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRR---------HQVPVGEALLGRVIDGF  105

Query  190  GRPLDG--LGPLGAKVDAPLSAPVINPLNREPIHKVLDVGVRAINTLLTVGRGQRMGLFA  247
            GRPLDG  L  +  K   ++++P   ++ R+PI + L  G+RAI+++ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPP---AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  248  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  307
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  308  pvLRMQAAAYTTSLAEYFRDQGKHVLMLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  367
            ++ R++A   +T++AE+FRD+GK+V++L DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  368  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLNRSLAEAGH  427
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVL+R LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  428  YPAIDIEQSISRAMTALIDDKHLERVRLFKQMLSRYQRNKDLINVGAYSSGRDALLDRAI  487
            YPAID+  ++SR    +  + H +   ++++ L+ YQ    LI +G Y  G D+  D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  488  ALYPRMESFLQQG  500
              YP + +FL+Q+
Sbjct  401  DTYPDICTFLRQS  413

1327) NH44784_042951 in NC_021285


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  240 bits (895),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 183/403 (46%), Positives = 257/403 (64%), Gaps = 29/403 (7%)

Query  79   AEVVGFDGHTLYLMPQADISGLPPGARVVPGEPPVQRQIPLPRKAELNGNAKPQLGRHLP  138
            AEVVG++G    L P +  +GL  G +V          ++L R+            +++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV----------MALRRR------------HQVP  92

Query  139  VGNALLGRVLDGAGRPLDGLGPLTGAELAPLSAQPINPLSRAPIDTVLDTGVRAINGLLT  198
            VG+ALLGRV+DG GRPLDG   L         A P  ++ R PI   L TG+RAI+++ T
Sbjct  93   VGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT  151

Query  199  VGRGQRMGLFAGSGVGKSVLLGMMARYTKADIIVVGLIGERGREVKEFIEHNLGPEGLar  258
             G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ E   R
Sbjct  152  CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKR  211

Query  259  svvvaapadvsaLLRLQGAAYATRLAEHFRDQGLDVLLIMDSLTRYAMAQREIALAIGEP  318
             V+V A +D +AL R+++   AT +AE FRD+G  V+L+ DSLTRYA A REIALA GE 
Sbjct  212  CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGET  271

Query  319  PATKGYPPSVFAKLPTLVERAGMGAPGPNGKAGSITAFYTVLAEGDDQQDPIADSARAIL  378
            + +  YPP+VF+ LP L+ER+GMG        GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  272  AVSGEYPPGVFSALPRLLERTGMGE------KGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  379  DGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITPQQFSVVRRFKQTLSRYQRNRDLIAV  438
            DGH+VLSR+LAE GHYPAID+ A++SR    + + ++  +   +++ L+ YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  439  GAYAAGNDPQLDDAIARYPRLEAFLQQDIGENVGYEDAVEQLR  481
            G Y  G D + D AI  YP + +FL+Q  +E  G E  +E+L+
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

1328) BN341_p0507 in NC_019674


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  240 bits (894),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 179/436 (42%), Positives = 297/436 (69%), Gaps = 15/436 (3%)

Query  3    LEVLRAKLQHPRDLSPRYGVVVKILPNMVFVSGFLPSV--GDVVQVQKADGSECLGMVVV  60
            ++ LR K   P +   R G +  + + ++  ++ LP+V  G++  ++ ++    L+ VV 
Sbjct  6    MQRLRLKYPPPDGYC-RWGRIQDVSATLL--NAWLPGVFMGELCCIKPGEE---LAEVVG  59

Query  61   VEKEQFGFTPFSFVEGCRVGDRVLFMRAGLSFPVGEGLLGRVldplgnpldglgY--VRA  118
            ++  +  ++PF+   G + G++V+ +R     PVGE+LLGRV+D +G PLDG     V  
Sbjct  60   INGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCW  119

Query  119  SAYAPVMVAPIKPLDRGIIDEPFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIV  178
              Y ++   P  ++ R  I +P+  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+ 
Sbjct  120  KDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC  176

Query  179  RGCEAQIKVIALIGERGREIPEFIHKNL-QGNLDNTVLVVATSDDAPLMRKYGAFCAMSV  237
             + +A+ +V+ LIGERGRE+ EFI+  L +      V+VVATSD ++L R  + F A ++
Sbjct  177  NAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTI  236

Query  238  AEYFKNQGHDVLFMMDSVTRFAMAQREIGLALGEPPTSKGYPPSSLTLLPQLMERAGKEQ  297
            AE+F+++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ ++ LP+L+ER+G  +
Sbjct  237  AEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE  296

Query  298  NKGSITAFFTVLVEGDDLSDPIADQSRSILDGHIVLSRELTDHGIYPPINILNSASRVSK  357
             KGSITAF+TVLVEGDD+++P+AD+ RS+LDGHIVLSR L+++G YP+I++L + SRV  
Sbjct  297  -KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFP  355

Query  358  EVSSHEHMLAARKFRKLYAMLKENEVLIRIGSYQRGFDEELDEAMDKKSAMDAFLAqeee  417
             V+SHEH   A  +R+  A+ +E E+LIRIG YQRG D + D A+D  + + +FL Q  +
Sbjct  356  VVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKD  415

Query  418  eiissqesVQMLQEIV  433
            E+ +++  ++ L++I+
Sbjct  416  EVCGPELLIEKLHQIL  431

1329) A11S_662 in NC_020812


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  240 bits (895),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 159/384 (42%), Positives = 259/384 (68%), Gaps = 10/384 (2%)

Query  60   EVVGFKDGRALLMPFGNLDGIGLGNPAEIEGRKPVICPDDRWLGRVINGMAQPIDGKGHL  119
            EVVG+++++ALL PF +  G+  G+      R+  +  ++  LGRVI+G ++P+DG+ +L
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-EL  114

Query  120  PMGGHPVPLRN---TPPPPHSRQRMGEKLDLGVRAVNTFTPVCRGQRMGIFAGSGVGKSV  176
            P     V  ++    PPP+  RQ + + L  G+RA+++ +    GQR+GIF+++GVGKS 
Sbjct  115  P----EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  177  LLSMMARYTEADISVIGLIGERGREVQEFLEDDLGPDGLARSVVIVATGDEPALMRRQAA  236
            LL+M+    +AD +V+ LIGERGREV+EF++  L+ +   R V++VAT+D PAL R +A 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  237  YTTLAVAEYFRRQGKQVLCLMDSVTRFAMAQREIGLSAGEPPTSKGYPPTTFGELArlle  296
            + + ++AE+FR +GK+V+ L DS+TR+A A REI+L+AGE + S  YPP  F+ L+    
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALP--RL  288

Query  297  ragpggpgegSITGLFSVLVEGDDTNEPIADAVRGIIDGHIVMERAIADRGRYPAINVLR  356
                G    GSIT++++VLVEGDD NEP+AD VR+++DGHIV+ R +A+RG+YPAI+VL 
Sbjct  289  LERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLA  348

Query  357  SVSRALPRALNDEQNAILKRAKQVITSYEDMAELIRLGAYRKGTDPKVDEAIDLYPKMEE  416
            ++SR +P   ++E+  +    ++ ++ Y+++  LIR+G Y++G D   D AID YP +  
Sbjct  349  TLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  417  FLAQNKDDHTTIVEGFARMQEMLT  440
            FL Q+KD+       + +++++LT
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

1330) fliI in NC_017360


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  239 bits (893),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLYARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1331) fliI in NC_016026


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  239 bits (893),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 158/384 (42%), Positives = 258/384 (68%), Gaps = 10/384 (2%)

Query  60   EVVGFKDGRALLMPFGNLDGIGLGNPAEIEGRKPVICPDDRWLGRVINGMAQPIDGKGHL  119
            EVVG+++++ALL PF +  G+  G+      R+  +  ++  LGRVI+G ++P+DG+ +L
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR-EL  114

Query  120  PMGGHPVPLRN---TPPPPHSRQRMGEKLDLGVRAVNTFTPVCRGQRMGIFAGSGVGKSV  176
            P     V  ++    PPP+  RQ + + L  G+RA+++ +    GQR+GIF+++GVGKS 
Sbjct  115  P----EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  177  LLSMMARYTEADISVIGLIGERGREVQEFLEDDLGPDGLARSVVIVATGDEPALMRRQAA  236
            LL+M+    +AD +V+ LIGERGREV+EF++  L+ +   R V++VAT+D PAL R +A 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  237  YTTLAVAEYFRRQGKQVLCLMDSVTRFAMAQREIGLSAGEPPTSKGYPPTTFGELArlle  296
            + + ++AE+FR +GK+V+ L DS+TR+A A REI+L+AGE + S  YPP  F+ L+    
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALP--RL  288

Query  297  ragpggpgegSITGLFSVLVEGDDTNEPIADAVRGIIDGHIVMERAIADRGRYPAINVLR  356
                G    GSIT++++VLVEGDD NEP+AD VR+++DGHIV+ R +A+RG+YPAI+VL 
Sbjct  289  LERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLA  348

Query  357  SVSRALPRALNDEQNAILKRAKQVITSYEDMAELIRLGAYRKGTDPKVDEAIDLYPKMEE  416
            ++SR +P   ++E+  +    ++ ++ Y+++  LIR+G Y++G D   D AID YP +  
Sbjct  349  TLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  417  FLAQNKDDNTTIVEGFARMQEMLN  440
            FL Q+KD+       + +++++L 
Sbjct  409  FLRQSKDEVCGPELLIEKLHQILT  432

1332) fliI in NC_016589


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 173/373 (47%), Positives = 252/373 (68%), Gaps = 16/373 (4%)

Query  118  AEVVGFAGDKLFLMPTTEMGGLLPGARVYPLESAPINDPMAGAKRLPVGWEMLGRVVDAS  177
            AEVVG+ G K +L P T  +GL  G +V +L             ++PVG  +LGRV+D+ 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRR---------HQVPVGEALLGRVIDGF  105

Query  178  GRPLDG--LGPLGAKVDAPLSAPVINPLNREPIHKVLDVGVRAINSLLTVGRGQRMGLFA  235
            GRPLDG  L  +  K   ++++P   ++ R+PI + L  G+RAI+S+ T G GQR+G+F+
Sbjct  106  GRPLDGRELPEVCWKDYDAMPPP---AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFS  162

Query  236  GSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLarsvvvaapadvs  295
            ++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  L+E+   R V+V A +D +
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  296  pvLRMQAAAYTTSLAEYFRDQGKHVLMLMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  355
            ++ R++A   +T++AE+FRD+GK+V++L DSLTRYA A REIALA GE + +  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  356  AKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLNRSLAEAGH  415
            + LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVL+R LAE GH
Sbjct  283  SALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  416  YPAIDIEQSISRAMTALIDDKHLERVRLFKQMLSRYQRNKDLINVGAYSSGRDALLDRAI  475
            YPAID+  ++SR    +  + H +   ++++ L+ YQ    LI +G Y  G D+  D+AI
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  476  ALYPRMESFLQQG  488
              YP + +FL+Q+
Sbjct  401  DTYPDICTFLRQS  413

1333) fliI in NC_014640


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  239 bits (893),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 182/403 (46%), Positives = 256/403 (64%), Gaps = 29/403 (7%)

Query  79   AEVVGFDGHTLYLMPQADISGLPPGARVVPGEPPVQRQIPLPRKAELNGNAKPQLGRHLP  138
            AEVVG++G    L P +  +GL  G +V          ++L R+            +++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV----------MALRRR------------HQVP  92

Query  139  VGNALLGRVLDGAGRPLDGLGPLTGAELAPLSAQPINPLSRAPIDTVLDTGVRAINGLLT  198
            VG+ALLGRV+DG GRPLDG   L         A P  ++ R PI   L TG+RAI+++ T
Sbjct  93   VGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT  151

Query  199  VGRGQRMGLFAGSGVGKSVLLGMMARYTKADVIVVGLIGERGREVKEFIEHNLGPEGLar  258
             G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ E   R
Sbjct  152  CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKR  211

Query  259  svvvaapadvsaLLRLQGAAYATRLAEHFRDQGLDVLLIMDSLTRYAMAQREIALAIGEP  318
             V+V A +D +AL R+++   AT +AE FRD+G  V+L+ DSLTRYA A REIALA GE 
Sbjct  212  CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGET  271

Query  319  PATKGYPPSVFAKLPMLVERAGMGAPGASGKAGSITAFYTVLAEGDDQQDPIADSARAIL  378
            + +  YPP+VF+ LP L+ER+GMG        GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  272  AVSGEYPPGVFSALPRLLERTGMGE------KGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  379  DGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITPEQFAVVRRFKQSLSRFQRNRDLIAV  438
            DGH+VLSR+LAE GHYPAID+ A++SR    + + E+  +   +++ L+ +Q    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  439  GAYAAGNDPQLDEAIARYPRLEAFLQQDIGENVGYEAAVSQLR  481
            G Y  G D + D AI  YP + +FL+Q  +E  G E  + +L+
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

1334) fliI in NC_007643


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 180/409 (45%), Positives = 273/409 (67%), Gaps = 19/409 (4%)

Query  21   FGRVVGVQGMLVEIGGAQTNLSVGDRCAVIARDGRPITCEVIGFRAARALLMPFSVLDGV  80
             GR+ +V + L++  +    + +G+ C +  + G  ++ EV+G+ +++ALL PF+     
Sbjct  22   WGRIQDVSATLLN--AWLPGVFMGELCCI--KPGEELA-EVVGINGSKALLSPFT--STA  74

Query  81   GLGCRAEVI-----EGVPAIYPTRDWLGRVINAMGEAVDGKGALPAGERAVAIRGRPPSA  135
            GL C  +V+     + VP        LGRVI++ G ++DG+  LP   +     + PP+A
Sbjct  75   GLHCGQQVMALRRRHQVPV---GEALLGRVIDGFGRPLDGR-ELPEVCWK-DYDAMPPPA  129

Query  136  HSRQRVGGKLDLGVRAINTFLTCCRGQRMGIFAgsgvgkssvmsmFIRNTNADVIVMGLV  195
              RQ +   L  G+RAI++  TC  GQR+GIF+++GVGKS++++M+    +AD  V+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  196  GERGREAREFIEDDLGEEGLKRAVTVVATSDESPLMRRQAAYMTLAVAEYFRDQGLDVLC  255
            GERGRE REFI+  L+EE  KR V VVATSD ++L R +A +++ ++AE+FRD+G  V+ 
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  256  LMDSVTRFAMAQREISLSAGEPPASKGYTPTVFAELPKLLERAGPGVEGSGSITGLFTVL  315
            L DS+TR+A A REI+L+AGE + S  Y P VF+ LP+LLER+G G    GSIT+++TVL
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVL  307

Query  316  VEGDDHNEPISDAVRGILDGHIVLDRAIAERGRYPAINILRSVSRTMPGCNSPAENALVA  375
            VEGDD NEP++D VR++LDGHIVL R +AERG+YPAI++L ++SR  P   S  +  L A
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  376  KGRRLMAAYENMAELIRLGAYRKGSDPETDTAIHYHPALDAFLTQAKTE  424
              RR +A Y+++  LIR+G Y++G D +TD AI+  P + +FL Q+K E
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1335) fliI in NC_017584


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 180/409 (45%), Positives = 273/409 (67%), Gaps = 19/409 (4%)

Query  21   FGRVVGVQGMLVEIGGAQTNLSVGDRCAVIARDGRPITCEVIGFRAARALLMPFSVLDGV  80
             GR+ +V + L++  +    + +G+ C +  + G  ++ EV+G+ +++ALL PF+     
Sbjct  22   WGRIQDVSATLLN--AWLPGVFMGELCCI--KPGEELA-EVVGINGSKALLSPFT--STA  74

Query  81   GLGCRAEVI-----EGVPAIYPTRDWLGRVINAMGEAVDGKGALPAGERAVAIRGRPPSA  135
            GL C  +V+     + VP        LGRVI++ G ++DG+  LP   +     + PP+A
Sbjct  75   GLHCGQQVMALRRRHQVPV---GEALLGRVIDGFGRPLDGR-ELPEVCWK-DYDAMPPPA  129

Query  136  HSRQRVGGKLDLGVRAINTFLTCCRGQRMGIFAgsgvgkssvmsmFIRNTNADVIVMGLV  195
              RQ +   L  G+RAI++  TC  GQR+GIF+++GVGKS++++M+    +AD  V+ L+
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  196  GERGREAREFIEDDLGEEGLKRAVTVVATSDESPLMRRQAAYMTLAVAEYFRDQGLDVLC  255
            GERGRE REFI+  L+EE  KR V VVATSD ++L R +A +++ ++AE+FRD+G  V+ 
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  256  LMDSVTRFAMAQREISLSAGEPPASKGYTPTVFAELPKLLERAGPGVEGSGSITGLFTVL  315
            L DS+TR+A A REI+L+AGE + S  Y P VF+ LP+LLER+G G    GSIT+++TVL
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVL  307

Query  316  VEGDDHNEPISDAVRGILDGHIVLDRAIAERGRYPAINILRSVSRTMPGCNSPAENALVA  375
            VEGDD NEP++D VR++LDGHIVL R +AERG+YPAI++L ++SR  P   S  +  L A
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  376  KGRRLMAAYENMAELIRLGAYRKGSDPETDTAIHYHPALDAFLTQAKTE  424
              RR +A Y+++  LIR+G Y++G D +TD AI+  P + +FL Q+K E
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1336) Terro_1830 in NC_018014


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  239 bits (890),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 182/413 (45%), Positives = 282/413 (69%), Gaps = 10/413 (2%)

Query  9    HLKTSP---FARLYGEVVEANGSYVQSLGPPCSIGD-CCEIHGKDGTRHMAEVIGFRAHN  64
            +LK +P   + R  G + + +++ +++  P   +G+ CC   G +    +AEV+G+ + +
Sbjct  10   RLKYPPPDGYCR-WGRIQDVSATLLNAWLPGVFMGELCCIKPGEE----LAEVVGINGSK  64

Query  65   VLAMPLSSGAGIRFGDRVFGSGTPASLSVGMAMLGRVLDANGHPIDGYGAVLGETLLPLD  124
             L  P++S AG++ G++V +      ++VG A+LGRV+D+ G+P+DG   +        D
Sbjct  65   ALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYD  123

Query  125  RNAPMPLERTRMLQPISVGVRAIDAMMTVARGQRIGIFGGSGVGKSTLIGMMTRNTAADL  184
              +P ++ R  + QP+  G+RAID++ T + GQR+GIF+++GVGKSTL++M+     AD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  185  TvvglvgergrevgefleDSLGEEGRSRSVVHVSTSDESPLMRMRCALAATTTAEYFAAR  244
             V+ L+GERGREV EF++ +L+EE R R V+ V+TSD ++L R+R  + ATT AE+F   
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  245  GKHVLLILDSLTRYAMAAREIGLAAGEPPSTKGYPPSVFAKMARLLERAGNFSNGSITAF  304
            GK+V+L+ DSLTRYA AAREI+LAAGE + +  YPP+VF+ ++RLLER+G   +GSITAF
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  305  YTVLMEGDDEQDPIVDGARSILDGHIILSREIAGEGRYPPIDILRSLSRLMPAVASESHQ  364
            YTVL+EGDD ++P+ D  RS+LDGHI+LSR +A  G+YP+ID+L +LSR+ P V+S+ H+
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  365  LQARAVRRMLSAYARGEDLLRVGAYKAGSDLELDQAIALRPLILKLLTQATHE  417
              A  +RR L+ Y   E L+R+G Y+ G D + D+AI   P I  +L Q+ +E
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1337) fliI in NC_017367


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLYARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1338) fliI in NC_017733


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLHARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FETSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1339) fliI in NC_005823


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  239 bits (890),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 165/367 (45%), Positives = 255/367 (70%), Gaps = 10/367 (2%)

Query  68   EIVGFEGHVYTLMPLGPIEGIYPEAFVFSSGRKLAIPVGKELLGRVLNGVGRPIDKKG--  125
            E+VG++G    L P+ +  G+     V +  R+  +PVG  LLGRV++G GRP+D +   
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP  115

Query  126  HIITKE--ERPPDNEVPNPLDRPIIRDVLMTGVRAIDGILTIGRGQRVGIFsgsgvgkss  183
            ++  K+    PP   V +P+ +P     LMTG+RAID++ T G GQRVGIFS++GVGKS+
Sbjct  116  EVCWKDYDAMPPPAMVRQPITQP-----LMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  184  llgMIARYTDADINVIALVGERGREVNEFIEIDLGKEGLKKSVVLAATSDAPKMEQVNCA  243
            LL+M+    DAD NV+ L+GERGREV EFI++ L+ E  K+ V++ ATSD P +E+V   
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  244  LLATSIAEYFRDQGKHVNLMMDSLTRFAQANREISASNHEPPITRGFSSSVFSKLAKLVE  303
            ++AT+IAE+FRD+GK+V L+ DSLTR+A+A REI+ +  E +++  ++++VFS L++L+E
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  304  RsgtsksggtitgFYTVLTEADEMEDPIADAVRGYIDGHIILNRKLAEKNHYPAIDVPAS  363
            R       G+IT+FYTVL E+D+M++P+AD VR+ +DGHI+L+R+LAE+ HYPAIDV A+
Sbjct  291  R-TGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  364  LSRVMARIAPEDQNLRAGMIRELISVYNSAEELIRLNAYVSGSDPKVDLAIRKKDKIDRY  423
            LSRV + ++++++   A+++R  +++Y+  E LIR+  Y  G D   D AI     I  +
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  424  LKQKIQE  430
            L+Q  +E
Sbjct  410  LRQSKDE  416

1340) fliI in NC_004342


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  239 bits (890),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 165/367 (45%), Positives = 255/367 (70%), Gaps = 10/367 (2%)

Query  68   EIVGFEGHVYTLMPLGPIEGIYPEAFVFSSGRKLAIPVGKELLGRVLNGVGRPIDKKG--  125
            E+VG++G    L P+ +  G+     V +  R+  +PVG  LLGRV++G GRP+D +   
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP  115

Query  126  HIITKE--ERPPDNEVPNPLDRPIIRDVLMTGVRAIDGILTIGRGQRVGIFsgsgvgkss  183
            ++  K+    PP   V +P+ +P     LMTG+RAID++ T G GQRVGIFS++GVGKS+
Sbjct  116  EVCWKDYDAMPPPAMVRQPITQP-----LMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  184  llgMIARYTDADINVIALVGERGREVNEFIEIDLGKEGLKKSVVLAATSDAPKMEQVNCA  243
            LL+M+    DAD NV+ L+GERGREV EFI++ L+ E  K+ V++ ATSD P +E+V   
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  244  LLATSIAEYFRDQGKHVNLMMDSLTRFAQANREISASNHEPPITRGFSSSVFSKLAKLVE  303
            ++AT+IAE+FRD+GK+V L+ DSLTR+A+A REI+ +  E +++  ++++VFS L++L+E
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  304  RsgtsksggtitgFYTVLTEADEMEDPIADAVRGYIDGHIILNRKLAEKNHYPAIDVPAS  363
            R       G+IT+FYTVL E+D+M++P+AD VR+ +DGHI+L+R+LAE+ HYPAIDV A+
Sbjct  291  R-TGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  364  LSRVMARIAPEDQNLRAGMIRELISVYNSAEELIRLNAYVSGSDPKVDLAIRKKDKIDRY  423
            LSRV + ++++++   A+++R  +++Y+  E LIR+  Y  G D   D AI     I  +
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  424  LKQKIQE  430
            L+Q  +E
Sbjct  410  LRQSKDE  416

1341) fliI in NC_017551


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  239 bits (890),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 165/367 (45%), Positives = 255/367 (70%), Gaps = 10/367 (2%)

Query  68   EIVGFEGHVYTLMPLGPIEGIYPEAFVFSSGRKLAIPVGKELLGRVLNGVGRPIDKKG--  125
            E+VG++G    L P+ +  G+     V +  R+  +PVG  LLGRV++G GRP+D +   
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP  115

Query  126  HIITKE--ERPPDNEVPNPLDRPIIRDVLMTGVRAIDGILTIGRGQRVGIFsgsgvgkss  183
            ++  K+    PP   V +P+ +P     LMTG+RAID++ T G GQRVGIFS++GVGKS+
Sbjct  116  EVCWKDYDAMPPPAMVRQPITQP-----LMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  184  llgMIARYTDADINVIALVGERGREVNEFIEIDLGKEGLKKSVVLAATSDAPKMEQVNCA  243
            LL+M+    DAD NV+ L+GERGREV EFI++ L+ E  K+ V++ ATSD P +E+V   
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  244  LLATSIAEYFRDQGKHVNLMMDSLTRFAQANREISASNHEPPITRGFSSSVFSKLAKLVE  303
            ++AT+IAE+FRD+GK+V L+ DSLTR+A+A REI+ +  E +++  ++++VFS L++L+E
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  304  RsgtsksggtitgFYTVLTEADEMEDPIADAVRGYIDGHIILNRKLAEKNHYPAIDVPAS  363
            R       G+IT+FYTVL E+D+M++P+AD VR+ +DGHI+L+R+LAE+ HYPAIDV A+
Sbjct  291  R-TGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  364  LSRVMARIAPEDQNLRAGMIRELISVYNSAEELIRLNAYVSGSDPKVDLAIRKKDKIDRY  423
            LSRV + ++++++   A+++R  +++Y+  E LIR+  Y  G D   D AI     I  +
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  424  LKQKIQE  430
            L+Q  +E
Sbjct  410  LRQSKDE  416

1342) fliI in NC_015717


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (889),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 167/373 (45%), Positives = 257/373 (69%), Gaps = 11/373 (2%)

Query  62   GTILAEVATIESQTINVTPFIADHRIELGARVTTMSGQLSLSPDESWLGRTVNALGEPID  121
            G  LAEV  I++    ++PF +   ++ G +V ++  +  ++ +E+ LGR ++++G P+D
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  122  --DAGPLVRGERAYAVQGSPPSPLRRNRLGTPLTTGVKAIDLFTPICA-GQRIGIFAGSG  178
              +   + +  + Y  ++ PP+++ R+ +  PL TG++AID   + C+ GQR+GIF+++G
Sbjct  111  GRELPEVCW--KDY--DAMPPPAMVRQPITQPLMTGIRAIDS-VATCGEGQRVGIFSAPG  165

Query  179  VGKSTLLAMLSRAPSSDVTVLALVGERSREVRDFLDDTLG-ATRSQVVSVVATSDESPMM  237
            VGKSTLLAML  AP +D  VL L+GER+REVR+F+D TL+  TR + V VVATSD +++ 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  238  RRLAPSAAMCIAEYYRDRGKTVLLIIDSLTRYAHAMRELALAADEPPVARGYPPSVFSNL  297
            R  A   A  IAE++RD GK V+L+ DSLTRYA+A RE+ALAA+E +V+  YPP+VFS L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  298  PRLLERAGPGEAGAGTITAILSVLVDGDDHNDPIADATRGILDGHIVLDRSIASQGRLPA  357
            PRLLER+G GE   G+ITA+ +VLV+GDD N+P+AD  R++LDGHIVL R +A +G+ PA
Sbjct  286  PRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  358  LDPLASLSRLAPKIRTKNQTQFVTQLIEVISRYEDTRDLRAIGGYKAGSDLTLDKAMEIV  417
            +D LA+LSR+ P + + ++ Q+ + L   ++ Y++   L  IG Y+ G D   DKA++  
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  418  PRVYDAMKQSLDE  430
            P +   ++QS DE
Sbjct  404  PDICTFLRQSKDE  416

1343) fliI in NC_007925


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (889),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 174/387 (45%), Positives = 266/387 (69%), Gaps = 13/387 (3%)

Query  46   LGELIGLDVDNQIQLGEVVRIDGTGVTAKPFDSHVA--AGLGLVAYRLPPKTLSPHPSWK  103
            +GEL  +  +++  L+EVV I+G+     PF S  +   G  ++A R     ++   +  
Sbjct  42   MGELCCIKPGEE--LAEVVGINGSKALLSPFTSTAGLHCGQQVMALR-RRHQVPVGEALL  98

Query  104  GRVVNALGEPLDDAGVLQAGERVMSTDANPPPAMSRTRVQAPLHTGVRVVDLFTPLC-IG  162
            GRV++++G PLD+  + +   +    DA PPPAM R  +  PL TG+R +D  +  C  G
Sbjct  99   GRVIDGFGRPLDGRELPEVCWK--DYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEG  155

Query  163  QRIGIFAGSGVGKTTLLSMLAQSSGFDTVVTALVGERGREVREFLEEALVHH-RSRAITV  221
            QR+GIF+++GVGK+TLL+ML ++++ D+ V  L+GERGREVREF++ +L ++ R R + V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  222  VSTSDESPMMRRLAAKTATTIAEYFRDRGESVLLIVDSVTRFAHAAREVALATGEPAIAR  281
            V+TSD +++ R  A   ATTIAE+FRD G  V+L+ DS+TR+A+AARE+ALA+GE A++ 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  282  GYAPSVFSELPRLLERSGPGLDGQGSITGIFAVLVDGDDHNEPVADTVRSTLDGHIVLDR  341
             Y+P+VFS LPRLLER+G  ++ +GSIT++++VLV+GDD NEP+AD VRS LDGHIVL R
Sbjct  276  EYPPGVFSALPRLLERTG--MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  342  EVADQGRYPAINVLASVSRLAQHVWSPEERNLVRKLRAMIARFEDTRDLRLMGGYQPGRD  401
             +A++G+YPAI+VLA++SR+   V S E+R+L   LR  +A +++   L  +G YQ G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  402  NELDQAVQLVPKIYEVMQQAPSDPACG  428
             + D+A++  P I   ++Q+  D  CG
Sbjct  394  TDTDKAIDTYPDICTFLRQS-KDEVCG  419

1344) fliI in NC_018828


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (888),  Expect = 6e-64, Method: Compositional matrix adjust.
 Identities = 179/406 (45%), Positives = 260/406 (65%), Gaps = 29/406 (7%)

Query  79   AEVVGFDGHTLYLMPQGDISGLPPGARVVPAEPAVQRPVPLPRKAELNGNAKPQVGRHLP  138
            AEVVG++G    L P    +GL  G +V++          L R+            +++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA----------LRRR------------HQVP  92

Query  139  VGNAMLGRVVDGAGRPLDGLGPLAGAEQAPLTALPINPLSRAPIDSVLDVGVRAINGLLT  198
            VG+A+LGRV+DG GRPLDG   L+        A+P  ++ R PI   L  G+RAI+++ T
Sbjct  93   VGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT  151

Query  199  VGRGQRMGLFAGSGVGKSVLLGMMARYTRADIIVVGLIGERGREVKEFIEHNLGPEGLar  258
             G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ E   R
Sbjct  152  CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKR  211

Query  259  svvvaapadvspLLRLQGVSYATRLAEHFRDQGLDVLLIMDSLTRFAMAQREIALAIGEP  318
             V+V A +D ++L R++++  AT +AE FRD+G  V+L+ DSLTR+A A REIALA GE 
Sbjct  212  CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGET  271

Query  319  PATKGYPPSVFAKLPALVERTGMGAPGPNGKAGSITAFYTVLAEGDDQQDPIADSARAIL  378
            + +  YPP+VF+ LP L+ERTGMG        GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  272  AVSGEYPPGVFSALPRLLERTGMGE------KGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  379  DGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITTEQFQQVRRFKQILSRYQRNRDLISV  438
            DGH+VLSR+LAE GHYPAID+ A++SR    + + E+ Q    +++ L+ YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  439  GAYVAGADPQLDDAIARYPRLEAYLQQNIGDSVDYGTAIDQLQRSL  484
            G Y  G D + D AI  YP + ++L+Q+ ++  +    I++L++ L
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1345) fliI2 in NC_016624


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (888),  Expect = 6e-64, Method: Compositional matrix adjust.
 Identities = 176/404 (44%), Positives = 272/404 (68%), Gaps = 15/404 (3%)

Query  42   VGDKCHAETLRGGRVLCETIGFRNGRSLLMAFDNLDGVAEGCAAVTDDTAFTLRPGPGWL  101
            +G+ C    ++ G  L E +G+  +++LL +F +  G+  G   ++      +  G + L
Sbjct  42   MGELC---CIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  102  GRVVNALGEPIDGKGPLVNGEHpralrqpppaacarrrVGKRLDSGIRVIDSFVPLC-RG  160
            GRV++++G P+DG+   +     +     PP+A  R+ + + L +GIR IDS V+ C  G
Sbjct  99   GRVIDGFGRPLDGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDS-VATCGEG  155

Query  161  QRLGVFAGSGVGKSTLLAMVARHAEADAIVIGLIGERGREVREFIQDDLGPEGLARSVVI  220
            QR+G+F+++GVGKSTLLAM+   ++AD+ V+ LIGERGREVREFI+  L+ E   R V++
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  221  VATSDEPPLMRRQAALLCMTVAEEMRDQGKHVLCLMDSVTRFAMAQREIGLAAGEPPTAK  280
            VATSD P+L R +A ++  T+AE  RD+GK+V+ L DS+TR+A A REI+LAAGE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  281  SYPPSVFAELPRLLERAGPGPEGSGDGDITAIFTVLVDGDDHDEPIADAVRGILDGHLVL  340
             YPP+VF+ LPRLLER+G G  GS    ITA++TVLV+GDD +EP+AD VR++LDGH+VL
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGS----ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  341  DRKIAEQGRYPAVNLLRSVSRTLP--GCHDARENRIVGRARALAATYDGMKEMIRLGAYK  398
             R++AE+G+YPA+++L ++SR +P    H+ R+   + R R   A Y+ +  +IR+G Y+
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRR--LALYQEVELLIRIGEYQ  389

Query  399  RGTDPETDAAIDLHPRLEEFLRQGKDDPSPSADSFARLDALLAA  442
            RG D +TD AID  P +  FLRQ+KD+   +   + +L+ +L+ 
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1346) Acav_4289 in NC_015138


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (887),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 167/344 (49%), Positives = 238/344 (70%), Gaps = 6/344 (1%)

Query  126  RLPMGDGLLGRVVDSQGLPLDHGGPVQDVSSEPMDRRQINAMDRDPVREMLDTGVRAINA  185
            ++P+G++LLGRV+D+ G PLD G  + +V     D     AM R+P+ + L TG+RAI++
Sbjct  90   QVPVGEALLGRVIDGFGRPLD-GRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDS  148

Query  186  LLSVGRGQRLGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKEFVEDILGEQD  245
            + + G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EF++  L+E+ 
Sbjct  149  VATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEET  208

Query  246  RERavvvaapadappLLRMQGAAYATAIAEHFRDKGKHVLLLMDSLTRYAMAQREIALAI  305
            R R V+V A +D P+L R+++   AT+IAE FRD+GK+V+LL DSLTRYA A REIALA 
Sbjct  209  RKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAA  268

Query  306  GEPPATKGYPPSCFAKLPALVERSGNGLHGVGSITAFYTVLSEGDDQQDPIADSARAILD  365
            GE + +  YPP+ F+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LD
Sbjct  269  GETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLD  326

Query  366  GHIVLSRALAETGHFPAIDIEQSASRVMHNVASREHFDLARRFRAVYSRYQKSRDLIQVG  425
            GHIVLSR LAE GH+PAID+  + SRV   V+S+EH +LA  +R   + YQ    LI++G
Sbjct  327  GHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIG  386

Query  426  AYMSGSDPALDEAIRLQPAMAAFLQQ---DMFEAAPMQDSLHAM  466
             Y  G D   D AI   P + +FL+Q   ++  +  + + LH +
Sbjct  387  EYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1347) lfiI in NC_017075


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (887),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 175/381 (46%), Positives = 260/381 (69%), Gaps = 7/381 (1%)

Query  56   AQVVGFRDEVSYLMPFRPATGLCTGARVLPGPEDTTQLIGPSWLGRIVDGLGEPVDGRGR  115
            A+VVG+ +  + L PF +++GL  G +V++        +G + LGR++DG+G P+DGR  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  116  LGGE--HVLPAHPPRINPLKRRPVDAPLDVGVRAINGVLTLGKGQRVGLMAgsgvgksvl  173
            L         A PP   ++ R+P+  PL  G+RAI++V T G GQRVG+ +++GVGKS L
Sbjct  114  LPEVCWKDYDAMPP--PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  174  lglITRQTVADVVVVGLIGERGREVREFIDLSLGEAGLRRAVVVVAPADESPLMRLRATE  233
            L+++     AD  V+ LIGERGREVREFID++L+E   +R V+VVA +D ++L R+RA  
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  234  LCHTIAAHFRDQGQDVLLLVDSLTRYAMARREVALALGEPPATRGYPPSVFGRLPQLVES  293
            +  TIA  FRD+G+ V+LL DSLTRYA A RE+ALA GE + +  YPP+VF+ LP+L+E 
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  294  AGNGENPEGSMSAIYTVLAEGDDQQDPVVDTARAILDGHIVLSRELAERGHYPAIDIAQS  353
            +G GE+  GS++A+YTVL EGDD ++P+ D  R++LDGHIVLSR LAERGHYPAID+  +
Sbjct  292  TGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  354  ISRCMALVTSHGHQAAARQLKSMAARHAQVRDLLPLGAYVPGADPATDRAVQAYPAIEAY  413
            +SR  ++VTSH H+  A  L+   A   +V  L+ +G Y  G D  TD+A+++YP I ++
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  414  LQQGTREAAPLADSVQRLEEL  434
            L+Q+  E       +++L+++
Sbjct  410  LRQSKDEVCGPELLIEKLHQI  430

1348) fliI in NC_008435


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (887),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 169/382 (45%), Positives = 263/382 (69%), Gaps = 10/382 (2%)

Query  46   LGELIGLEVDNQMQIGEVIRIDGNGVTAKPFESHVA--AGLGLIAYRLPPKTLSPHPSWK  103
            +GEL  +  ++++  +EV+ I+G+     PF S  +   G  ++A R     ++   +  
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALR-RRHQVPVGEALL  98

Query  104  GRVINALGQPLDGAGVLLAGEREMSTDANPPPAMSRARVRAPLQTGVRVIDLFSPICVGQ  163
            GRVI+++G+PLDG    L+       DA PPPAM R  +  PL TG+R ID  +    GQ
Sbjct  99   GRVIDGFGRPLDGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  164  RIGIFAGSGVGKTTLLSMMAQSAGFDTVVTALVGERGREVREFLEEALVHH-KSRAVTVV  222
            R+GIF+++GVGK+TLL+M+ ++++ D+ V  L+GERGREVREF++ +L ++ + R V VV
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  223  STSDESPMMRRLAAKTATTIAEYFRDRGESVLLIVDSVTRFAHAAREVALATGEPAIARG  282
            +TSD +++ R  A   ATTIAE+FRD G  V+L+ DS+TR+A+AARE+ALA+GE A++  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  283  YAPSVFSEIPRLLERSGPGIDGQGSITGIFAVLVDGDDHNEPVADTVRSTLDGHIVLDRE  342
            Y+P+VFS +PRLLER+G G   +GSIT++++VLV+GDD NEP+AD VRS LDGHIVL R 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  343  VADQGRYPAVNVLSSVSRLAQHVWSPEERNLVRKLRAMIARFEDTRDLRLMGGYQPGRDS  402
            +A++G+YPA++VL+++SR+   V S E+R+L   LR  +A +++   L  +G YQ G D+
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  403  ELDQAVQLVPKIYEVMQQAPSD  424
            + D+A++  P I   ++Q+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1349) fliI in NC_017063


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (886),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 161/372 (44%), Positives = 254/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDITS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   +TS
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FETSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1350) fliI in NC_017382


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (886),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 160/373 (43%), Positives = 254/373 (69%), Gaps = 13/373 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGVL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D + +      DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQIGNDKELDEAIKKKALMEQFLAQDENALHP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEILK  434
             E  +++L++IL 
Sbjct  420  PELLIEKLHQILT  432

1351) fliI in NC_013722


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (886),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 182/377 (49%), Positives = 262/377 (70%), Gaps = 5/377 (1%)

Query  60   MGAICRVEVDGGWVDAEVVGFSGERTSLMPSAETHGLLPNARVVPLHrrggvevgegllg  119
            MG +C +  +     AEVVG++G ++ L P + T GL    +V++L+RR  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGVPLDGKGPIRAEGSVGMAGVSINPLAREPITTPLDVGVRAINALLPIGRGQRV  179
            RVID+ G PLDG+  +      +  +++  ++ R+PIT PL  G+RAI+++   G GQRV
Sbjct  100  RVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  180  GLFAGSGVGKSTLLGMMTRYTAADIIVVGLIGERGREVRDFVETTLGEEGlrravvvaap  239
            G+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  240  adrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYP  299
            +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  300  PSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVA  359
            P+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+A
Sbjct  279  PGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  360  DSGLYPAIDIESSVSRVVQDIADEPWRLRIRALKRLVSAYSSNRDLITIGAYQRGNDPAV  419
            + G YPAID+ +++SRV   ++ +  R     L+R ++ Y     LI IG YQRG D   
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  420  DEALERWPEIMEFLGQD  436
            D A++  P+I  FL Q 
Sbjct  397  DKAIDTYPDICTFLRQS  413

1352) fliI in NC_019382


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (886),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 179/406 (45%), Positives = 260/406 (65%), Gaps = 29/406 (7%)

Query  79   AEVVGFDGHTLYLMPQSDISGLPPGARVVPAEPAVQRPVPLPRKAELNGNAKPQVGRHLP  138
            AEVVG++G    L P +  +GL  G +V++          L R+            +++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA----------LRRR------------HQVP  92

Query  139  VGNAMLGRVVDGAGRPLDGLGPLAGAEQAPLTALPINPLSRAPIDSVLDVGVRAINGLLT  198
            VG+A+LGRV+DG GRPLDG   L+        A+P  ++ R PI   L  G+RAI+++ T
Sbjct  93   VGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT  151

Query  199  VGRGQRMGLFAGSGVGKSVLLGMMARYTRADIIVVGLIGERGREVKEFIEHNLGPEGLar  258
             G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ E   R
Sbjct  152  CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKR  211

Query  259  svvvaapadvspLLRLQGASYATRLAEHFRDQGLDVLLIMDSLTRFAMAQREIALAIGEP  318
             V+V A +D ++L R+++   AT +AE FRD+G  V+L+ DSLTR+A A REIALA GE 
Sbjct  212  CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGET  271

Query  319  PATKGYPPSVFAKLPALVERTGMGAPGPNGKAGSITAFYTVLAEGDDQQDPIADSARAIL  378
            + +  YPP+VF+ LP L+ERTGMG        GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  272  AVSGEYPPGVFSALPRLLERTGMGE------KGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  379  DGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITTEQFQQVRRFKQILSRYQRNRDLISV  438
            DGH+VLSR+LAE GHYPAID+ A++SR    + + E+ Q    +++ L+ YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  439  GAYVAGADPQLDDAIARYPRLEAYLQQNIGDSVDYGTAIDQLQRSL  484
            G Y  G D + D AI  YP + ++L+Q+ ++  +    I++L++ L
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1353) fliI in NC_018829


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (886),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 179/406 (45%), Positives = 260/406 (65%), Gaps = 29/406 (7%)

Query  79   AEVVGFDGHTLYLMPQSDISGLPPGARVVPAEPAVQRPVPLPRKAELNGNAKPQVGRHLP  138
            AEVVG++G    L P +  +GL  G +V++          L R+            +++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA----------LRRR------------HQVP  92

Query  139  VGNAMLGRVVDGAGRPLDGLGPLAGAEQAPLTALPINPLSRAPIDSVLDVGVRAINGLLT  198
            VG+A+LGRV+DG GRPLDG   L+        A+P  ++ R PI   L  G+RAI+++ T
Sbjct  93   VGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT  151

Query  199  VGRGQRMGLFAGSGVGKSVLLGMMARYTRADIIVVGLIGERGREVKEFIEHNLGPEGLar  258
             G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ E   R
Sbjct  152  CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKR  211

Query  259  svvvaapadvspLLRLQGASYATRLAEHFRDQGLDVLLIMDSLTRFAMAQREIALAIGEP  318
             V+V A +D ++L R+++   AT +AE FRD+G  V+L+ DSLTR+A A REIALA GE 
Sbjct  212  CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGET  271

Query  319  PATKGYPPSVFAKLPALVERTGMGAPGPNGKAGSITAFYTVLAEGDDQQDPIADSARAIL  378
            + +  YPP+VF+ LP L+ERTGMG        GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  272  AVSGEYPPGVFSALPRLLERTGMGE------KGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  379  DGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITTEQFQQVRRFKQILSRYQRNRDLISV  438
            DGH+VLSR+LAE GHYPAID+ A++SR    + + E+ Q    +++ L+ YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  439  GAYVAGADPQLDDAIARYPRLEAYLQQNIGDSVDYGTAIDQLQRSL  484
            G Y  G D + D AI  YP + ++L+Q+ ++  +    I++L++ L
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1354) fliI in NC_002927


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (886),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 179/406 (45%), Positives = 260/406 (65%), Gaps = 29/406 (7%)

Query  79   AEVVGFDGHTLYLMPQSDISGLPPGARVVPAEPAVQRPVPLPRKAELNGNAKPQVGRHLP  138
            AEVVG++G    L P +  +GL  G +V++          L R+            +++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA----------LRRR------------HQVP  92

Query  139  VGNAMLGRVVDGAGRPLDGLGPLAGAEQAPLTALPINPLSRAPIDSVLDVGVRAINGLLT  198
            VG+A+LGRV+DG GRPLDG   L+        A+P  ++ R PI   L  G+RAI+++ T
Sbjct  93   VGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT  151

Query  199  VGRGQRMGLFAGSGVGKSVLLGMMARYTRADIIVVGLIGERGREVKEFIEHNLGPEGLar  258
             G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ E   R
Sbjct  152  CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKR  211

Query  259  svvvaapadvspLLRLQGASYATRLAEHFRDQGLDVLLIMDSLTRFAMAQREIALAIGEP  318
             V+V A +D ++L R+++   AT +AE FRD+G  V+L+ DSLTR+A A REIALA GE 
Sbjct  212  CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGET  271

Query  319  PATKGYPPSVFAKLPALVERTGMGAPGPNGKAGSITAFYTVLAEGDDQQDPIADSARAIL  378
            + +  YPP+VF+ LP L+ERTGMG        GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  272  AVSGEYPPGVFSALPRLLERTGMGE------KGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  379  DGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITTEQFQQVRRFKQILSRYQRNRDLISV  438
            DGH+VLSR+LAE GHYPAID+ A++SR    + + E+ Q    +++ L+ YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  439  GAYVAGADPQLDDAIARYPRLEAYLQQNIGDSVDYGTAIDQLQRSL  484
            G Y  G D + D AI  YP + ++L+Q+ ++  +    I++L++ L
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1355) fliI in NC_002928


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (887),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 179/406 (45%), Positives = 260/406 (65%), Gaps = 29/406 (7%)

Query  79   AEVVGFDGHTLYLMPQSDISGLPPGARVVPAEPAVQRPVPLPRKAELNGNAKPQVGRHLP  138
            AEVVG++G    L P +  +GL  G +V++          L R+            +++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA----------LRRR------------HQVP  92

Query  139  VGNAMLGRVVDGAGRPLDGLGPLAGAEQAPLTALPINPLSRAPIDSVLDVGVRAINGLLT  198
            VG+A+LGRV+DG GRPLDG   L+        A+P  ++ R PI   L  G+RAI+++ T
Sbjct  93   VGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT  151

Query  199  VGRGQRMGLFAGSGVGKSVLLGMMARYTRADIIVVGLIGERGREVKEFIEHNLGPEGLar  258
             G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ E   R
Sbjct  152  CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKR  211

Query  259  svvvaapadvspLLRLQGASYATRLAEHFRDQGLDVLLIMDSLTRFAMAQREIALAIGEP  318
             V+V A +D ++L R+++   AT +AE FRD+G  V+L+ DSLTR+A A REIALA GE 
Sbjct  212  CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGET  271

Query  319  PATKGYPPSVFAKLPALVERTGMGAPSPNGKAGSITAFYTVLAEGDDQQDPIADSARAIL  378
            + +  YPP+VF+ LP L+ERTGMG        GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  272  AVSGEYPPGVFSALPRLLERTGMGE------KGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  379  DGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITTEQFQQVRRFKQILSRYQRNRDLISV  438
            DGH+VLSR+LAE GHYPAID+ A++SR    + + E+ Q    +++ L+ YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  439  GAYVAGADPQLDDAIARYPRLEAYLQQNIGDSVDYGTAIDQLQRSL  484
            G Y  G D + D AI  YP + ++L+Q+ ++  +    I++L++ L
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1356) fliI in NC_018518


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (886),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 179/406 (45%), Positives = 260/406 (65%), Gaps = 29/406 (7%)

Query  65   AEVVGFDGHTLYLMPQSDISGLPPGARVVPAEPAVQRPVPLPRKAELNGNAKPQVGRHLP  124
            AEVVG++G    L P +  +GL  G +V++          L R+            +++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA----------LRRR------------HQVP  92

Query  125  VGNAMLGRVVDGAGRPLDGLGPLAGAEQAPLTALPINPLSRAPIDSVLDVGVRAINGLLT  184
            VG+A+LGRV+DG GRPLDG   L+        A+P  ++ R PI   L  G+RAI+++ T
Sbjct  93   VGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT  151

Query  185  VGRGQRMGLFAGSGVGKSVLLGMMARYTRADIIVVGLIGERGREVKEFIEHNLGPEGLar  244
             G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ E   R
Sbjct  152  CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKR  211

Query  245  svvvaapadvspLLRLQGASYATRLAEHFRDQGLDVLLIMDSLTRFAMAQREIALAIGEP  304
             V+V A +D ++L R+++   AT +AE FRD+G  V+L+ DSLTR+A A REIALA GE 
Sbjct  212  CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGET  271

Query  305  PATKGYPPSVFAKLPALVERTGMGAPGPNGKASSITAFYTVLAEGDDQQDPIADSARAIL  364
            + +  YPP+VF+ LP L+ERTGMG  G      SITAFYTVL EGDD ++P+AD  R++L
Sbjct  272  AVSGEYPPGVFSALPRLLERTGMGEKG------SITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  365  DGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITTEQFQQVRRFKQILSRYQRNRDLISV  424
            DGH+VLSR+LAE GHYPAID+ A++SR    + + E+ Q    +++ L+ YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  425  GAYVAGADPQLDDAIARYPRLEAYLQQNIGDSVDYGTAIDQLQRSL  470
            G Y  G D + D AI  YP + ++L+Q+ ++  +    I++L++ L
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1357) fliI in NC_017223


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (886),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 179/406 (45%), Positives = 260/406 (65%), Gaps = 29/406 (7%)

Query  65   AEVVGFDGHTLYLMPQSDISGLPPGARVVPAEPAVQRPVPLPRKAELNGNAKPQVGRHLP  124
            AEVVG++G    L P +  +GL  G +V++          L R+            +++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA----------LRRR------------HQVP  92

Query  125  VGNAMLGRVVDGAGRPLDGLGPLAGAEQAPLTALPINPLSRAPIDSVLDVGVRAINGLLT  184
            VG+A+LGRV+DG GRPLDG   L+        A+P  ++ R PI   L  G+RAI+++ T
Sbjct  93   VGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT  151

Query  185  VGRGQRMGLFAGSGVGKSVLLGMMARYTRADIIVVGLIGERGREVKEFIEHNLGPEGLar  244
             G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ E   R
Sbjct  152  CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKR  211

Query  245  svvvaapadvspLLRLQGASYATRLAEHFRDQGLDVLLIMDSLTRFAMAQREIALAIGEP  304
             V+V A +D ++L R+++   AT +AE FRD+G  V+L+ DSLTR+A A REIALA GE 
Sbjct  212  CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGET  271

Query  305  PATKGYPPSVFAKLPALVERTGMGAPGPNGKAGSITAFYTVLAEGDDQQDPIADSARAIL  364
            + +  YPP+VF+ LP L+ERTGMG        GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  272  AVSGEYPPGVFSALPRLLERTGMGE------KGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  365  DGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITTEQFQQVRRFKQILSRYQRNRDLISV  424
            DGH+VLSR+LAE GHYPAID+ A++SR    + + E+ Q    +++ L+ YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  425  GAYVAGADPQLDDAIARYPRLEAYLQQNIGDSVDYGTAIDQLQRSL  470
            G Y  G D + D AI  YP + ++L+Q+ ++  +    I++L++ L
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1358) fliI in NC_002929


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (886),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 179/406 (45%), Positives = 260/406 (65%), Gaps = 29/406 (7%)

Query  65   AEVVGFDGHTLYLMPQSDISGLPPGARVVPAEPAVQRPVPLPRKAELNGNAKPQVGRHLP  124
            AEVVG++G    L P +  +GL  G +V++          L R+            +++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA----------LRRR------------HQVP  92

Query  125  VGNAMLGRVVDGAGRPLDGLGPLAGAEQAPLTALPINPLSRAPIDSVLDVGVRAINGLLT  184
            VG+A+LGRV+DG GRPLDG   L+        A+P  ++ R PI   L  G+RAI+++ T
Sbjct  93   VGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT  151

Query  185  VGRGQRMGLFAGSGVGKSVLLGMMARYTRADIIVVGLIGERGREVKEFIEHNLGPEGLar  244
             G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ E   R
Sbjct  152  CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKR  211

Query  245  svvvaapadvspLLRLQGASYATRLAEHFRDQGLDVLLIMDSLTRFAMAQREIALAIGEP  304
             V+V A +D ++L R+++   AT +AE FRD+G  V+L+ DSLTR+A A REIALA GE 
Sbjct  212  CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGET  271

Query  305  PATKGYPPSVFAKLPALVERTGMGAPGPNGKAGSITAFYTVLAEGDDQQDPIADSARAIL  364
            + +  YPP+VF+ LP L+ERTGMG        GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  272  AVSGEYPPGVFSALPRLLERTGMGE------KGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  365  DGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITTEQFQQVRRFKQILSRYQRNRDLISV  424
            DGH+VLSR+LAE GHYPAID+ A++SR    + + E+ Q    +++ L+ YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  425  GAYVAGADPQLDDAIARYPRLEAYLQQNIGDSVDYGTAIDQLQRSL  470
            G Y  G D + D AI  YP + ++L+Q+ ++  +    I++L++ L
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1359) fliI in NC_017366


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  238 bits (886),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 161/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+   
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD---  123

Query  123  PVITMPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
               +MP +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  124  ---AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1360) fliI in NC_015761


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (885),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 175/371 (48%), Positives = 254/371 (69%), Gaps = 14/371 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldgggk  126
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  127  pldglpapdTT--ETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGS  184
            PLDG   P+    + +A+  P+   + R PI + L TG+RAI+++ T G GQR+G+F+++
Sbjct  108  PLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  185  GVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPL  244
            GVGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  245  LRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAK  304
             R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  305  LPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYP  364
            LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYP
Sbjct  285  LPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  365  AIDIEASISRAMTALISEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITL  424
            AID+ A++SR    + S++H     ++++ L+ +Q    L+ +G Y +G D   DKAI  
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  425  WPQLEAFLQQG  435
             P++ +FL+Q+
Sbjct  403  YPDICTFLRQS  413

1361) A464_2120 in NC_021870


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (885),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 175/371 (48%), Positives = 254/371 (69%), Gaps = 14/371 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldgggk  126
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  127  pldglpapdTT--ETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGS  184
            PLDG   P+    + +A+  P+   + R PI + L TG+RAI+++ T G GQR+G+F+++
Sbjct  108  PLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  185  GVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPL  244
            GVGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  245  LRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAK  304
             R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  305  LPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYP  364
            LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYP
Sbjct  285  LPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  365  AIDIEASISRAMTALISEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITL  424
            AID+ A++SR    + S++H     ++++ L+ +Q    L+ +G Y +G D   DKAI  
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  425  WPQLEAFLQQG  435
             P++ +FL+Q+
Sbjct  403  YPDICTFLRQS  413

1362) fliI in NC_012982


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 179/388 (47%), Positives = 267/388 (69%), Gaps = 11/388 (2%)

Query  69   GELVGFEGERAVFLACDDVDGLRPGAAVCFSADDAIVRVSNSWLGRVVDAFGAPVDG-GL  127
            +E+VG++G +A++ +     GL+ G  V        V V+++ LGRV+D+FG P+DG  L
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  128  PLAQGSISRQIKAVPPAAHSRARVSEPMSLGVRALDGFAPCAVGQRMGLFAGSGVGKSTL  187
            P       ++  A+PP+A  R  +++P+  G+RA+D+ A C+ GQR+G+F+++GVGKSTL
Sbjct  115  P---EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  188  MSMLARNAQADVVVIGLIgergrevrefveDTLGIEGLARSVVVSATSDETAPRRRRAAW  247
            ++ML   ++AD  V+ LIGERGREVREF++ TL+ E   R V+V ATSD  A  R RA  
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  248  MTMAVAEHFRDQGYKVLCLLDSVTRFAMAQREIGLAAGEPPTTKGYTPSVFSELPKLLER  307
            ++ ++AE FRD+G +V+ L DS+TR+A A REI+LAAGE + +  Y P+VFS LP+LLER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  308  AGPGKIVPAGQPQGQITGLFTVLVDGDDHNEPVADAVRGILDGHIVMDRKIAERGRYPAI  367
            +G G        +G IT+++TVLV+GDD NEP+AD VR++LDGHIV+ R++AERG+YPAI
Sbjct  292  TGMGE-------KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI  344

Query  368  DVLKSLSRLASHLYTPETAEIARQARRLMSLYSDMEELVRIGAYARGADPEVDRAVQLSP  427
            DVL +LSR+ + + + E  ++A   RR ++LY ++E L+RIG Y RG D + D+A++  P
Sbjct  345  DVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  428  DIEKILTQHVNENSPPEETFAMLAQVLG  455
            DI  +L Q  +E   PE  +  L Q+L 
Sbjct  405  DICTFLRQSKDEVCGPELLIEKLHQILT  432

1363) fliI in NC_010725


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (885),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 181/393 (47%), Positives = 267/393 (68%), Gaps = 27/393 (6%)

Query  61   QVGEVVRIDSAGATVKPFESR--IEAGIGSLAHR------IGPAQLRPDPRWKGRVIDAL  112
            +++EVV I+++ A + PF S   ++ G   +A R      +G A L       GRVID++
Sbjct  53   ELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL-------GRVIDGF  105

Query  113  GRPVDGLGPLAEGPDSV--PLDADPPAAMTRARVRTPLPTGVRAVDLFTPLCA-GQRIGI  169
            GRP+DG     E P+      DA PP+AM R  +  PL TG+RA+D  +  C+ GQR+GI
Sbjct  106  GRPLDG----RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEGQRVGI  160

Query  170  FAGSGVGKSTLLAMLAGAEGFDSVVVALVGERGREVREFLEGPIAA-SRERAVIVVSTGD  228
            F+++GVGKSTLLAML  A + DS V+ L+GERGREVREF++  ++  +R R VIVV+T+D
Sbjct  161  FSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSD  220

Query  229  ESPMMRRQAPKVALAVAECFRDRGESVLLIVDSVTRYAHAARDVALAAGEPAVARGYPPS  288
             +++ R +A  VA ++AE FRD G  V+L+ DS+TRYA+AAR++ALAAGE AV+  YPP+
Sbjct  221  RPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPG  280

Query  289  VFSDLPRLLERAGPGAEGSGTITGIFSVLVDGDDHNDPVADSIRGTLDGHVVLDRAIAEQ  348
            VFS LPRLLER+G G  GS  IT++++VLV+GDD N+P+AD +R+ LDGH+VL R +AE+
Sbjct  281  VFSALPRLLERTGMGEKGS--ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAER  338

Query  349  GRYPAIDLLGSISRLAGEVWTGDQRELVRKLKSMMARFEETRDLRLMGGYRAGSDPDLDQ  408
            G+YPAID+L+++SR+   V + ++R+L   L+  +A ++E   L  +G Y+ G D D D+
Sbjct  339  GHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDK  398

Query  409  AVSLVPRIYEALRQEPGQPPSRDAFLE-LAQSL  440
            A+   P I   LRQ  ++  + + ++E L Q L
Sbjct  399  AIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1364) fliI in NC_010067


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (885),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 174/371 (47%), Positives = 254/371 (69%), Gaps = 14/371 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldgggk  126
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  127  pldglpapdTT--ETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGS  184
            PLDG   P+    + +A+  P+   + R PI + L TG+RAI+++ T G GQR+G+F+++
Sbjct  108  PLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  185  GVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPL  244
            GVGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  245  LRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAK  304
             R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  305  LPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYP  364
            LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYP
Sbjct  285  LPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  365  AIDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITL  424
            AID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI  
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  425  WPQLEAFLQQG  435
             P++ +FL+Q+
Sbjct  403  YPDICTFLRQS  413

1365) bgla_1g37720 in NC_015381


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 183/399 (46%), Positives = 263/399 (66%), Gaps = 23/399 (5%)

Query  64   VGAECTIELPPGSTLPVAEAEVVGFAGERLFLMPTTEVAGVLPGARVWPLERAPIADPLA  123
            +G  C I   PG  L    AEVVG+ G + +L P T  AG+  G +V +L R        
Sbjct  42   MGELCCIK--PGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRR-------  88

Query  124  GAKRLPVGWQMLGRVVDASGRPLD--RLGPLASELDAPLSAPTINPLEREPIHHVLDVGV  181
               ++PVG  +LGRV+D+ GRPLD   L  +      ++++P+   + R+PI + L  G+
Sbjct  89   --HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGI  143

Query  182  RAINALLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQI  241
            RAI+++ T G GQR+G+F+++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+  
Sbjct  144  RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFT  203

Query  242  LGEDGLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQRE  301
            L+E+   R V+V A +D ++L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A RE
Sbjct  204  LSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAARE  263

Query  302  IALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSA  361
            IALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+AD  
Sbjct  264  IALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEV  321

Query  362  RAILDGHIVLSRQLAEAGHYPAIDIEQSISRAMTSLIDERHLDRVRRFKQMLSRYQRNRD  421
            R++LDGHIVLSR+LAE GHYPAID+  ++SR    +  + H +    +++ L+ YQ    
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  422  LIAVGAYAAGRDAQLDRAIALYPRIEAFLQQGFRE-CAP  459
            LI +G Y  G D++ D+AI  YP I +FL+Q+  E C+P
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

1366) fliI in NC_010170


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (885),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 178/403 (45%), Positives = 257/403 (64%), Gaps = 29/403 (7%)

Query  70   AEVVGFDGHTLYLMPQADISGLPPGARVVPGEPPVQRAIPLPRRAELNGNAKPQLGRHLP  129
            AEVVG++G    L P +  +GL  G          Q+ ++L RR            +++P
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCG----------QQVMALRRR------------HQVP  92

Query  130  VGNALLGRVLDGAGRPLDGLGPLTGAELAPLSAHPINPLSRAPIDTVLDVGVRAINGLLT  189
            VG+ALLGRV+DG GRPLDG   L         A P  ++ R PI   L  G+RAI+++ T
Sbjct  93   VGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT  151

Query  190  VGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKEFIEHNLGADGLar  249
             G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ +   R
Sbjct  152  CGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKR  211

Query  250  svvvaapadvspLLRLQGAAYATRLAEHFRDQGLDVLLIMDSLTRYAMAQREIALAIGEP  309
             V+V A +D ++L R+++   AT +AE FRD+G  V+L+ DSLTRYA A REIALA GE 
Sbjct  212  CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGET  271

Query  310  PATKGYPPSVFARLPALVERAGMGAPGPNGKAGSITAFYTVLAEGDDQQDPIADSARAIL  369
            + +  YPP+VF+ LP L+ER+GMG        GSITAFYTVL EGDD ++P+AD  R++L
Sbjct  272  AVSGEYPPGVFSALPRLLERTGMGE------KGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  370  DGHVVLSRHLAEAGHYPAIDIEASISRAMTSLISDQQYAVVRRFKQTLSRYQRNRDLIAV  429
            DGH+VLSR+LAE GHYPAID+ A++SR    + S+++  +   +++ L+ YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  430  GAYSAGNDPQLDDAIARYPRLEAFLQQDIGDSVSYDAAVDQLR  472
            G Y  G D + D AI  YP + +FL+Q  ++  + +  +++L+
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLH  428

1367) fliI in NC_017374


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFVEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  ASIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1368) fliI in NC_017381


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFVEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  ASIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1369) fliI in NC_017357


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFVEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  ASIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1370) fliI in NC_019560


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 254/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIQKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI+  + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FETSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1371) fliI in NC_017371


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFVEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  ASIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1372) fliI in NC_000921


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 254/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGVL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D + +      DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLVQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1373) fliI in NC_017359


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 254/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIQKKALMEQFLTQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI+  + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1374) fliI in NC_017354


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 254/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGVL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D + +      DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLVQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1375) Shal_4242 in NC_010334


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 187/431 (44%), Positives = 299/431 (70%), Gaps = 15/431 (3%)

Query  12   KVPVAQVY---GRLTRVNGLLLEAVGCQLGTGDRCYVECRDNHLVEAEVVGFYKDTLCLM  68
            K P ++ Y   GR+  V++ LL+A    +  G+ C +   +++L  AEVVG+      L 
Sbjct  12   KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIK-PGEEL--AEVVGINGSKALLS  68

Query  69   PIEPTNGLMPGARVMPIEGRCQIPTglgllgrvldglgqplddlgCIKHLPHVPL-QFKS  127
            P+ +T GL  G +VM++  R Q+P G +LLGRV+DG+G+PLD+    ++LP+V   ++ +
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG----RELPEVCWKDYDA  124

Query  128  INP--LLRKPIRDPLDVGIRSINALLPVGRGQRLGLFAGSGVGKSVLLGMMTRFTEADVV  185
            + P  ++R+PI +PL  GIR+I+++   G GQR+G+F+++GVGKS LL+M+    +AD  
Sbjct  125  MPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN  184

Query  186  VVGLIGERGREVREFIEESLGEEGRKRavvvaaPADTTPLMRMRAMRLCHHIAAAYRDQG  245
            V+ LIGERGREVREFI+ +L+EE RKR V+V A +D  +L R+RA+ +   IA  +RD+G
Sbjct  185  VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNG  244

Query  246  KQVLLLVDSLTRYAQAQREIALSLGEPPATKGYPPSAFAQLPSLVEMAGNSQHPTGTLTA  305
            K+V+LL DSLTRYA+A REIAL+ GE + +  YPP+ F+ LP L+E +G ++   G++TA
Sbjct  245  KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITA  302

Query  306  FYTVLTEGDDQQDPIADSARAILDGHIVLNRKLAEQGHFPAIDIGASVSRLATQVAKQSS  365
            FYTVL EGDD ++P+AD  R++LDGHIVL+R+LAE+GH+PAID+ A++SR+   V+ +  
Sbjct  303  FYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEH  362

Query  366  LEQGQWFRHLNSRYNEVKELLPLGGYQAGHDAEMDMAVRSYPQMAAFLRQATHTQADLTS  425
             + +  +R+  + Y+EV  L+ +G YQ G D++ D A+ +YP++ +FLRQ+ +   +   
Sbjct  363  RQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPEL  422

Query  426  SLSALEQLVSQ  436
             +  L+Q++++
Sbjct  423  LIEKLHQILTE  433

1376) K747_04095 in NC_021215


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 160/373 (43%), Positives = 253/373 (68%), Gaps = 13/373 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQT  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEILK  434
             E  +++L++IL 
Sbjct  420  PELLIEKLHQILT  432

1377) K748_05265 in NC_021882


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 160/373 (43%), Positives = 253/373 (68%), Gaps = 13/373 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQT  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEILK  434
             E  +++L++IL 
Sbjct  420  PELLIEKLHQILT  432

1378) K749_06855 in NC_021216


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 160/373 (43%), Positives = 253/373 (68%), Gaps = 13/373 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQT  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEILK  434
             E  +++L++IL 
Sbjct  420  PELLIEKLHQILT  432

1379) Sulac_3154 in NC_016884


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (885),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 176/418 (43%), Positives = 270/418 (65%), Gaps = 13/418 (3%)

Query  9    RLPAATRFRPFGRIEAVRGLTVISRGPDAAIGEVCRLEDSRVPPLAMEVVGFLPEGRLLL  68
            + P++  +   GRI+ V +  + ++ P+  +GE+C +  +    LA EVVG +  ++ LL
Sbjct  12   KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPG--EELA-EVVG-INGSKALL  67

Query  69   TPFGELKGVRPGMMVTATRHQLKVPVGRSLLGRLIDGTGQPLDNRPL----WFSERIEVT  124
            +PF    G++ G  V A R++ +VPVG +LLGR+IDG G+PLD R L    W     +  
Sbjct  68   SPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCW----KDYD  123

Query  125  RDAISPLTRAPITTPLWTGVRVIDALLTLGRGQRLGIFAGAGVGKTTLLQQILRGVTADV  184
              + +++ R PIT PL TG+R ID++ T G GQR+GIF+++GVGK+TLL  +  +  AD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  185  AVVGLIGERGREIAEFYH-QLPPTARQRTVIVAATSDSPAIMRLRALDTTFQIAEKFRQE  243
             V+ LIGERGRE+ EF +  L+  +R+R VIV ATSD PA+ R+RAL  +  IAE FR++
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  244  GQDVILVLDSLTRVALAQSEVGLMGGELPAVRGFTPSVFHLLPRILERAGRFQTGSITGI  303
            G+ V+L+ DSLTR A A  E++L +GE +    + P+VF  LPR+LER+G  + GSIT++
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  304  FTVLLDGDDPTDPIGDAVRGILDGNLYLSRSLAEAHFFPAIDILRSMSRLMPDVVDAAHW  363
            +TVL++GDD  +P++D VR++LDG++ LSR LAE   +PAID+L ++SR+ P V    H+
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  364  SLAGRVRRILATLEKFSDVVALGAYQAGADPVLDGALAIKPLLDRWARQGLEDNTPPD  421
             LA+ +RR LA  +    ++ +G YQ G D   D A+   P +    RQ+ ++   P+
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

1380) fliI in NC_015757


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (885),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 176/418 (43%), Positives = 270/418 (65%), Gaps = 13/418 (3%)

Query  9    RLPAATRFRPFGRIEAVRGLTVISRGPDAAIGEVCRLEDSRVPPLAMEVVGFLPEGRLLL  68
            + P++  +   GRI+ V +  + ++ P+  +GE+C +  +    LA EVVG +  ++ LL
Sbjct  12   KYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPG--EELA-EVVG-INGSKALL  67

Query  69   TPFGELKGVRPGMMVTATRHQLKVPVGRSLLGRLIDGTGQPLDNRPL----WFSERIEVT  124
            +PF    G++ G  V A R++ +VPVG +LLGR+IDG G+PLD R L    W     +  
Sbjct  68   SPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCW----KDYD  123

Query  125  RDAISPLTRAPITTPLWTGVRVIDALLTLGRGQRLGIFAGAGVGKTTLLQQILRGVTADV  184
              + +++ R PIT PL TG+R ID++ T G GQR+GIF+++GVGK+TLL  +  +  AD 
Sbjct  124  AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  185  AVVGLIGERGREIAEFYH-QLPPTARQRTVIVAATSDSPAIMRLRALDTTFQIAEKFRQE  243
             V+ LIGERGRE+ EF +  L+  +R+R VIV ATSD PA+ R+RAL  +  IAE FR++
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  244  GQDVILVLDSLTRVALAQSEVGLMGGELPAVRGFTPSVFHLLPRILERAGRFQTGSITGI  303
            G+ V+L+ DSLTR A A  E++L +GE +    + P+VF  LPR+LER+G  + GSIT++
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  304  FTVLLDGDDPTDPIGDAVRGILDGNLYLSRSLAEAHFFPAIDILRSMSRLMPDVVDAAHW  363
            +TVL++GDD  +P++D VR++LDG++ LSR LAE   +PAID+L ++SR+ P V    H+
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  364  SLAGRVRRILATLEKFSDVVALGAYQAGADPVLDGALAIKPLLDRWARQGLEDNTPPD  421
             LA+ +RR LA  +    ++ +G YQ G D   D A+   P +    RQ+ ++   P+
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPE  421

1381) fliI in NC_020911


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 160/384 (42%), Positives = 255/384 (67%), Gaps = 7/384 (1%)

Query  44   VSVGSVCSVETAGGSTVLGEVIGYSEGRNKLVLYQSGAAVQAGAPVSLMDQGTMVDVGDA  103
            V +G +C +  +     L+EV+G + ++  L  + S A+++ G  V  + +   V VG+A
Sbjct  40   VFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEA  96

Query  104  YLGRVVDGLGLPLDDSPIPEGAAKTPLNGKLLNPLARGIIPGPLDVGVRAVNGLLTIGYG  163
             LGRV+DG+G PLD+  +PE   K   ++    ++ R  I  PL  G+RA++++ T G G
Sbjct  97   LLGRVIDGFGRPLDGRELPEVCWKD-YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  164  QRIGIIAGSGVGKSVLLGMMARYASADVVVIGLIGERAREVGEMVRAIMGSEPHGKVSIV  223
            QR+GI++++GVGKS LL+M+   + AD  V+ LIGER+REV E +   ++ E + +  IV
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  224  AVPADRSPLLRIRGARRATALAEHFRDQGKNVLLIMDSLTRIAHAQREIGLALGEAPTSK  283
               +DR++L R+R+   AT++AE FRD+GK V+L+ DSLTR A+A REI+LA GE++ S 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  284  GYPASVISMIPALIERAGMGVGPNFGSITGIYTVLADGDDSNDPVVDTARAILDGHIVLS  343
             YP++V+S +P L+ER+GMG     GSIT++YTVL +GDD N+P+ D  R++LDGHIVLS
Sbjct  276  EYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLS  332

Query  344  RSIAQMGIYPAIDIPASISRVMNDIVPSQQQKAARKFKRFVSLYNENRDLMLMGGYVAGQ  403
            R +A+ G YPAID+ A++SRV   + + ++++ A  ++R ++LY+E   L+ +G Y  G 
Sbjct  333  RRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGV  392

Query  404  DLDLDQAVSVWPKLVDYINQSPEE  427
            D D D+A+   P +  ++ QS +E
Sbjct  393  DTDTDKAIDTYPDICTFLRQSKDE  416

1382) fliI in NC_012973


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (885),  Expect = 9e-64, Method: Compositional matrix adjust.
 Identities = 161/372 (44%), Positives = 254/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDITS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   +TS
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1383) fliI in NC_017379


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  237 bits (885),  Expect = 9e-64, Method: Compositional matrix adjust.
 Identities = 161/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+   
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD---  123

Query  123  PVITMPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
               +MP +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  124  ---AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1384) fliI in NC_008700


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 186/382 (49%), Positives = 260/382 (69%), Gaps = 9/382 (2%)

Query  47   VGSLCAIDTMGGELIAEVVGFDEDLLYLMPIEELKGVLPGARVRPLGEQTGIHVGMSLLG  106
            +G LC I    GE +AEVVG++     L P+    G+  G +V +L  +  + VG +LLG
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  RVldgggepldglgplgTTDIAPRHGPAINP--LARRPIHEPLDVGIRAINAMLTVGKGQ  164
            RV+DG G PLDG       ++  ++  A+ P  + R+PI +PL  GIRAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGREL---PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADvivvglvgergrevkeFIEEILGPEGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+ E R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGFNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDLQDPIADAARAILDGHIVLSRT  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD+++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISPAHLEAMRRVKQTYSLYQQNRDLISIGAYAAGSDP  404
            LA+ GHYPAID+ A++SRV P+V S  H +    +++  +LYQ+   LI IG Y  G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQGMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1385) bglu_1g33550 in NC_012724


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 185/401 (47%), Positives = 260/401 (65%), Gaps = 27/401 (6%)

Query  68   VGSECIIELPPGSTLPVAEAEVVGFAGDRLFLMPTTEVAGVLPGARVWPLERAPVADPMT  127
            +G  C I   PG  L    AEVVG+ G + +L P T  AG+  G +V +L R        
Sbjct  42   MGELCCIK--PGEEL----AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRR-------  88

Query  128  GAKRLPVGWQMLGRVVDASGRPLDRLGPLGSELDA----PLSAPTINPLEREPIHHVLDV  183
               ++PVG  +LGRV+D+ GRPLD     G EL         A    ++ R+PI + L  
Sbjct  89   --HQVPVGEALLGRVIDGFGRPLD-----GRELPEVCWKDYDAMPPPAMVRQPITQPLMT  141

Query  184  GVRAINALLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIE  243
            G+RAI+++ T G GQR+G+F+++GVGKS LL+ +     A+  V+ LIGERGREV+EFI+
Sbjct  142  GIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFID  201

Query  244  QILGEDGLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQ  303
              L+E+   R V+V A +D ++L R+++   AT++AE+FRD+GK+V+LL DSLTRYA A 
Sbjct  202  FTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAA  261

Query  304  REIALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIAD  363
            REIALA GE + +  YPP+VF+ LP L+ERTG G    GSITAFYTVL EGDD ++P+AD
Sbjct  262  REIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLAD  319

Query  364  SARAILDGHIVLSRQLAEAGHYPAIDIEQSISRAMTALIDDRHLDRVRRFKQMLSRYQRN  423
              R++LDGHIVLSR+LAE GHYPAID+  ++SR    +  + H +    +++ L+ YQ  
Sbjct  320  EVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEV  379

Query  424  RDLIAVGAYAAGRDAQLDRAIALYPRIEAFLQQGFRE-CAP  463
              LI +G Y  G D++ D+AI  YP I +FL+Q+  E C+P
Sbjct  380  ELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

1386) AnaeK_2267 in NC_011145


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 196/430 (46%), Positives = 291/430 (68%), Gaps = 6/430 (1%)

Query  5    LGRVRAALGEAAPLPLRGRVTRLTGLVLEAAVGGVRQGEAVEIRAPGREPLQAEVVGLRD  64
            + R+R     +     +GR+  +++ +L+A + GV  GE   I+ PG E   AEVVG+ +
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGING  62

Query  65   DRAVLVPFGDLGGVGLDAEVVPTGRPHTIRAgpgllgrvldglgrpldgAPLPAGLEEW-  123
             +A+L PF   +G+  + +V++  R H +  G +LLGRV+DG+GRPLDG  LP     W 
Sbjct  63   SKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV--CWK  120

Query  124  AVDRPAPNPLTRRAVAAPLPLGVRVLDGLLTAGEGQRIGLFAGSGVGKSTLLGQLARGAR  183
              D  +P ++ R++++ PL  G+R +D++ T GEGQR+G+F+++GVGKSTLL+ L  ++ 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  184  ADLCVVCLVGERGREVREFLEGPLGAEGLARSVVVAATSDAPALVRLKAAHVATAVAEWF  243
            AD  V+ L+GERGREVREF++  L+ E   R V+V ATSD PAL R++A  VAT++AE F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  244  AERGDRVLLLVDSVTRYARALREVGLAAGEPPARQGYPPSVFAALPRLLERAGNRARGGI  303
             + G RV+LL DS+TRYARA RE++LAAGE +    YPP+VF+ALPRLLER+G   +G+I
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  304  TAVYTVLVAGGDLEEPIADEVRGILDGHVVLDRAVAAGGRFPAVDPLQSLSRVMPavaap  363
            TA YTVLV G+D++EP+ADEVR++LDGH+VL R +A  G++PA+D L +LSRV P V++ 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  364  ahlaaagrvrallaaharvrdlvalGAYRAGADPEADLALARLPAIEAFLRQPLGEAAPL  423
             H   A+ +R  LA    V  L+ +G Y+ G D ++D A+   P I +FLRQ+ +E    
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGP  420

Query  424  EETLGRLEAL  433
            E  + +L+ +
Sbjct  421  ELLIEKLHQI  430

1387) fliI in NC_021820


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1388) fliI in NC_011149


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1389) fliI in NC_021844


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1390) SBOV20321 in NC_022241


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1391) fliI in NC_006905


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1392) fliI in NC_021818


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1393) fliI in NC_011205


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1394) fliI in NC_011294


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1395) fliI in NC_011274


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1396) fliI in NC_022221


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1397) fliI in NC_016831


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1398) fliI in NC_021810


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1399) SU5_02575 in NC_017623


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1400) fliI in NC_021812


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1401) fliI in NC_011083


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1402) fliI in NC_020307


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1403) fliI in NC_011080


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1404) SN31241_30710 in NC_021902


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  77   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  135
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  136  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  195
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  196  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  255
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  256  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  315
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  316  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  375
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  376  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  435
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  436  PQLEAFLQQG  445
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1405) fliI in NC_010102


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1406) fliI in NC_012125


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  77   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  135
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  136  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  195
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  196  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  255
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  256  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  315
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  316  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  375
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  376  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  435
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  436  PQLEAFLQQG  445
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1407) fliI in NC_021984


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1408) fliI in NC_011094


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1409) STY2180 in NC_003198


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 170/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLETGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLISVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    LI +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1410) fliI in NC_016856


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1411) fliI in NC_017046


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  77   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  135
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  136  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  195
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  196  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  255
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  256  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  315
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  316  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  375
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  376  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  435
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  436  PQLEAFLQQG  445
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1412) STMMW_19521 in NC_016854


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1413) fliI in NC_003197


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1414) fliI in NC_016810


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1415) fliI in NC_016857


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  77   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  135
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  136  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  195
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  196  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  255
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  256  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  315
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  316  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  375
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  376  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  435
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  436  PQLEAFLQQG  445
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1416) fliI in NC_016860


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1417) fliI in NC_021151


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1418) fliI in NC_016863


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1419) fliI in NC_021814


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1420) STBHUCCB_9730 in NC_016832


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 170/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLETGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLISVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    LI +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1421) fliI in NC_021176


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 170/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLETGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLISVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    LI +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1422) fliI in NC_004631


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 170/370 (46%), Positives = 247/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLETGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLISVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    LI +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1423) fliI in NC_013859


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 173/402 (44%), Positives = 270/402 (68%), Gaps = 11/402 (2%)

Query  42   VGDKCHAETLRGGRVLCETIGFRNGRSLLMAFDSLDGVAEGCAAVTDDSAFTLRPGQGWL  101
            +G+ C    ++ G  L E +G+  +++LL +F S  G+  G   ++      +  G++ L
Sbjct  42   MGELC---CIKPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  102  GRVVNALGEPIDGKGPLANGEHpralrqpppaacarrrvgrrIDSGIRVIDGFVPLC-RG  160
            GRV++++G P+DG+  L++         PPPA   +      + +GIR ID+ V+ C  G
Sbjct  99   GRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLM-TGIRAIDS-VATCGEG  155

Query  161  QRLGVFAGSGVGKSTLLAMVARHAEADTIVIGLIGERGREVREFIQDDLGPEGLARSVVI  220
            QR+G+F+++GVGKSTLLAM+   ++AD+ V+ LIGERGREVREFI+  L+ E   R V++
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  221  VATSDEPPLMRRQAALLTMTVAEEMRDQGKHVLCLMDSVTRFAMAQREIGLAAGEPPTAK  280
            VATSD P+L R +A +++ T+AE  RD+GK+V+ L DS+TR+A A REI+LAAGE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  281  SYPPSVFAELPRLLERAGPGPEGVGEGDITAIFTVLVDGDDHDEPIADAVRGILDGHLVL  340
             YPP+VF+ LPRLLER+G G      G ITA++TVLV+GDD +EP+AD VR++LDGH+VL
Sbjct  276  EYPPGVFSALPRLLERTGMG----EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  341  DRGIAEQGRYPAVNLLRSVSRSLPGCHGVEENRIVGRTRALAATYDGMKEMIRLGAYKRG  400
             R +AE+G+YPA+++L ++SR +P   + E+ ++ +  R   A Y+ +  +IR+G Y+RG
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRG  391

Query  401  TDPETDAAIDLHPRLEEFLRQGKDDPSPSADSFTRLESLLAA  442
             D +TD AID  P +  FLRQ+KD+   +   + +L+ +L+ 
Sbjct  392  VDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1424) fliI in NC_021500


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 181/418 (44%), Positives = 266/418 (64%), Gaps = 22/418 (5%)

Query  25   FRRYGRLTRATGLVMEAVGLKLP---IGTLCIVERETETGIQRVESEVVGFNAETLYLMP  81
            + R GR+   ++ +++A    LP   +G LC +    E       +EVVG+N+    L P
Sbjct  19   YCRWGRIQDVSATLLNA---WLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSP  69

Query  82   LENVEGVLPGARVYAFGNNVkgkllplgpellgRVLDASARPLDG--LPPPGSTDRGPLF  139
            + +  G+  G +V A+        +P+G  LLGRV+D+ +RPLDG  LP     D +++ 
Sbjct  70   FTSTAGLHCGQQVMALRRR---HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM-  125

Query  140  TAPFNPLQRDPIKNVLDVGVRAINGLLTVGRGQRMGLFAGSGVGKSVLLGMMARFTKADV  199
              P  ++ R+PI + L  G+RAI+++ T G GQR+G+F+++GVGKS LL+M+     AD 
Sbjct  126  --PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  200  IVVGLIGERGREVKDFIENILGKEGLKRSVVIAAPADVSPILRMQGAVYCTRIAEDFRDR  259
             V+ LIGERGREV++FI+  L+ E  KR V++ A +D +++ R+++    T IAE FRD 
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  260  GLDVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGTKGGGSIT  319
            G  V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ LP L+ER+G G K  GSIT
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSIT  301

Query  320  AFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAESGHYPAIDIEASISRAMTELIEPA  379
            AFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYPAID+ A++SR    +    
Sbjct  302  AFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHE  361

Query  380  HYKKVQRFKQMLSSYQRNRDLVSVGAYAAGSDPLLDQAISLYPSMERYLHQGIHESCD  437
            H +    +++ L+ YQ    L+ +G Y  G D   D+AI  YP +  +L+Q+ +E C+
Sbjct  362  HRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

1425) fliI in NC_018939


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQTRSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FETSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1426) fliI in NC_000915


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQTRSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FETSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1427) fliI in NC_019563


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FETSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1428) fliI in NC_017372


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FETSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1429) fliI in NC_017362


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FETSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1430) fliI in NC_017378


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1431) fliI in NC_018937


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQTRSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FETSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1432) fliI in NC_018938


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQTRSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FETSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1433) fliI in NC_017741


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1434) fliI in NC_017739


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1435) fliI in NC_011333


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 160/373 (43%), Positives = 253/373 (68%), Gaps = 13/373 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEILK  434
             E  +++L++IL 
Sbjct  420  PELLIEKLHQILT  432

1436) fliI in NC_017376


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 159/372 (43%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCTRKFRRLYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   +  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FETSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1437) Rfer_0553 in NC_007908


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (879),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 173/383 (46%), Positives = 240/383 (63%), Gaps = 23/383 (6%)

Query  64   LAEVVGFSNDRAFLMPAGDVHGLSSGASVEPAAAYVAVPRLGERRQTERISGYATlrlpl  123
            LAEVVG++  +A+L P     GL  G  V +      VP +GE      I G+       
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVP-VGEALLGRVIDGF-------  105

Query  124  gdgllgrvvdAQGAPMDRRGPIEDVTAVPLDRQPINAMDRAPVRETLDTGVRAINALLTI  183
                        G P+D R  + +V     D  P  AM R P+ + L TG+RAI+++ T 
Sbjct  106  ------------GRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATC  152

Query  184  GRGQRIGLFAGSGVGKSVLLGMMARYTKADVIVVGLIGERGREVKEFIEDILGDDGRARS  243
            G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+++ R R 
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  244  VVVAAPGDAPPLLRMQGAAYATAIAESFRDKGKHVLLLMDSLTRYAMAQREIALAIGEPP  303
            V+V A +D P+L R+++   AT+IAE FRD+GK+V+LL DSLTRYA A REIALA GE +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  304  ATKGYPPSCFAKLPQLVERSGNGLHGVGSITAFYTVLSEGDDQQDPIADAARAILDGHIV  363
             +  YPP+ F+ LP+L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIV
Sbjct  273  VSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  364  LSRALAESGHFPAIDIEQSASRVMHNVVPQQHFEMARRFRAINSRYEKGRDLVQIGAYVG  423
            LSR LAE GH+PAID+  + SRV   V +++H ++A  +R   + Y+    L++IG Y  
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  424  GSDPALDEAIQLHDDMARFLQQD  446
            G D   D AI+   D+  FL+Q 
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQS  413

1438) RSPPHO_00109 in NC_017059


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  236 bits (880),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 169/369 (46%), Positives = 244/369 (67%), Gaps = 10/369 (2%)

Query  106  SEVVGFRTGRALLLPFSGLDGVGLGCRVEIGEERPTLRPTI--QWLGRVINAMAEPVDGG  163
            +EVVG+  ++ALL PF++    GL C  ++   R   +  +    LGRVI++ + P+DG 
Sbjct  55   AEVVGINGSKALLSPFTS--TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGR  112

Query  164  GPLPAGDVA-VPIRNTPPAAHSRRRVGGKLDLGVRAVNTFLTCCRGQRMGIFAGSGVGKS  222
              LP  +V        PP+A  R+ +   L  G+RA+++  TC  GQR+GIF+++GVGKS
Sbjct  113  E-LP--EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS  169

Query  223  SILSMFVRNTTADVIVCGLVGERGREAREFIEDDLGEEGLARSVTVVATSDESPLMRRQC  282
            ++L+M+     AD  V  L+GERGRE REFI+  L+EE   R V VVATSD ++L R + 
Sbjct  170  TLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA  229

Query  283  AYVTLAVAEYFRDLGLDVLCLMDSVTRFAMAQREISLSAGEPPASKGYTPSVFAELPRLL  342
             +V+ ++AE+FRD G  V+ L DS+TR+A A REI+L+AGE + S  Y P+VF+ LPRLL
Sbjct  230  LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLL  289

Query  343  ERAGPGCEGSGTITGLFTVLVEGDDHNEPISDAVRGILDGHIVLERSIAERGRYPAINIL  402
            ER+G G    G+IT+++TVLVEGDD NEP++D VR++LDGHIVL R +AERG+YPAI++L
Sbjct  290  ERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  403  RSVSRTMPGCNTPEENALVAEARRLMSTYEDMAELIRLGAYKAGSDPLVDLAIAHHQPLE  462
             ++SR  P   + E+  L A  RR ++ Y+++  LIR+G Y+ G D   D AI     + 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  463  TFLTQGKRE  471
            TFL Q+K E
Sbjct  408  TFLRQSKDE  416

1439) HBZC1_06550 in NC_015674


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  235 bits (877),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 141/304 (47%), Positives = 224/304 (74%), Gaps = 2/304 (0%)

Query  3    PLQRGIIDEMFGVGVKSIDGLLTCGKGQKMGIFAGSGVGKSTLMGMIVRGCSASIKVIAL  62
            ++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  A  +V+ L
Sbjct  129  AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188

Query  63   IGERGREIPEFIHKNLQGDLSN-TVLVVATSDDSPLMRKYGAFCAMSVAEYFKNQGHDVL  121
            IGERGRE+ EFI+  L  +  +  V+VVATSD ++L R  + F A ++AE+F+++G  V+
Sbjct  189  IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVV  248

Query  122  FMMDSVTRFAMAQREIGLALGEPPTSKGYPPSSLTLLPQLMERAGKEQNKGSITAFFTVL  181
            ++ DS+TR+A A REI+LA GE + S  YPP+ ++ LP+L+ER+G  + KGSITAF+TVL
Sbjct  249  LLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGSITAFYTVL  307

Query  182  VEGDDLSDPIADQSRSILDGHIVLSRELTDHGIYPPINILNSASRVSKEVSSHEHNMAAR  241
            VEGDD+++P+AD+ RS+LDGHIVLSR L+++G YP+I++L + SRV   V+SHEH   A 
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  242  KFRKLHALLKENEVLIRIGSYQRGFDSELDEAMDKKESMGAFMAQEEEEIVDSQQSIQQL  301
             +R+  AL +E E+LIRIG YQRG D++ D A+D    + +F+ Q  +E+ +++  I++L
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

Query  302  IEMM  305
             +++
Sbjct  428  HQIL  431

1440) fliI in NC_008086


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  235 bits (878),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 160/372 (44%), Positives = 253/372 (69%), Gaps = 13/372 (3%)

Query  68   FTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGAL-----DYERLA  122
            ++PF    G + G++V+ L+   + PVG  LLGRV++ +G+ +D +        DY+ ++
Sbjct  67   LSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMP  126

Query  123  PVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL  182
            P      +++ R  I + +  G+++ID++ TCG GQ++GIF+++GVGKSTL++M+  +  
Sbjct  127  P------PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  183  APIKVIALIGERGREIPEFIEKNLKGDLSS-CVLVVATSDDSPLMRKYGAFCAMSVAEYF  241
            A  +V+ LIGERGRE+ EFI+  L  +    CV+VVATSD ++L R  + F A ++AE+F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  242  KNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGS  301
            +++G  V+++ DS+TR+A A REI+LA GE + S  YPP+ +S LP+L+ER+G  E KGS
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGS  299

Query  302  ITAFFSVLVEGDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIIS  361
            ITAF++VLVEGDD+++P+AD+ RS+LDGHIVLSR L++ G YP+I++L + SRV   + S
Sbjct  300  ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS  359

Query  362  ESQNLCARKFRRLYALLKENEMLIRIGSYQIGNDKELDEAIKKKALMEQFLAQDENALQP  421
            + +   A  +RR  AL +E E+LIRIG YQ G D + D AI   + +  FL Q  + +  
Sbjct  360  HEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCG  419

Query  422  FEQSFQQLEEIL  433
             E  +++L++IL
Sbjct  420  PELLIEKLHQIL  431

1441) fliI in NC_008577


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  235 bits (877),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 186/382 (49%), Positives = 266/382 (70%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMAGELIAEVVGFDDELLYLMPIEELRGVLPGARVVPLGEQAglsvglsllg  106
            +G LC I   +GE +AEVVG+++    L P+    G+  G +V++L  +  ++VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  rvldgNGVPLDG--LGALSTEQQAPRHSNAINPLSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG  L  +   +  +  + A   + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGEKGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+E  R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRS  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSLYQQNKDLISIGAYAQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1442) fliI in NC_008321


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  235 bits (877),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 186/382 (49%), Positives = 266/382 (70%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMAGELIAEVVGFDDELLYLMPIEELRGVLPGARVVPLGEQAglsvglsllg  106
            +G LC I   +GE +AEVVG+++    L P+    G+  G +V++L  +  ++VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  rvldgNGVPLDG--LGALSTEQQAPRHSNAINPLSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG  L  +   +  +  + A   + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGEKGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+E  R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRS  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSLYQQNKDLISIGAYAQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1443) fliI in NC_008322


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  235 bits (877),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 186/382 (49%), Positives = 266/382 (70%), Gaps = 9/382 (2%)

Query  47   VGSLCSIETMAGELIAEVVGFDDELLYLMPIEELRGVLPGARVVPLGEQAglsvglsllg  106
            +G LC I   +GE +AEVVG+++    L P+    G+  G +V++L  +  ++VG +LLG
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  107  rvldgNGVPLDG--LGALSTEQQAPRHSNAINPLSRRAITEPLDVGVRAINAMLTVGKGQ  164
            RV+DG G PLDG  L  +   +  +  + A   + R++IT+PL  G+RAI+++ T G GQ
Sbjct  100  RVIDGFGRPLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  165  RMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGEKGRARSVVVA  224
            R+G+F+++GVGKS LL+M+  +  AD  V+ L+GERGREV+EFI+  L+E  R R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  225  APADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEPPATKG  284
            A +D ++L R+RA   +T IAE+FRD G  V+LL DSLTRYA+A REIALA GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  285  YPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRS  344
            YPP+VF+ LPRL+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  345  LADSGHYPAIDIEASISRVAPMVISNEHLEAMRRVKQTYSLYQQNKDLISIGAYAQGSDP  404
            LA+ GHYPAID+ A++SRV P+V S+EH +    +++  +LYQ+   LI IG Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  405  RIDNAIRLQPAMNAFLRQTMRD  426
              D+AI   P + +FLRQ+  +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDE  416

1444) Entcl_1808 in NC_014618


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  235 bits (878),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 171/371 (47%), Positives = 254/371 (69%), Gaps = 14/371 (3%)

Query  67   SEVVGFNGHRLFLMPLEEVEGVLPGARVYARNACGEGLQSGKQLPLGPALLGRVldgggk  126
            +EVVG+NG + +L P+    G+  G +V        +L+   Q+P+G ALLGRV+DG G+
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQV-------MALRRRHQVPVGEALLGRVIDGFGR  107

Query  127  pldglpapdTT--ETGALITPPFNPLQRTAIEHVLDTGVRPINALLTVGRGQRMGLFAGS  184
            PLDG   P+    + +A+  P+   + R +I + L TG+R+I+++ T G GQR+G+F+++
Sbjct  108  PLDGRELPEVCWKDYDAMPPPA---MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  185  GVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGADGRARSVVIAAPADVSPL  244
            GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  245  LRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAK  304
             R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  305  LPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYP  364
            LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSRRLAE GHYP
Sbjct  285  LPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  365  AIDIEASISRAMTALITEQHYARVRNFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIAL  424
            AID+ A++SR    + +++H      +++ L+ +Q    L+ +G Y +G D   DKAI  
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  425  WPQLEAFLQQG  435
             P++ +FL+Q+
Sbjct  403  YPDICTFLRQS  413

1445) fliI in NC_004757


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  235 bits (878),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 173/389 (45%), Positives = 257/389 (67%), Gaps = 35/389 (8%)

Query  78   AEVVGFSGERLFLMPSGDIYGLTPGAKVVPTEYTGAVPRIGTLQHPRRRAADRTKHISVG  137
            AEVVG++G + +L P     GL  G +V++                RRR      +++VG
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMAL---------------RRR-----HQVPVG  94

Query  138  PELLGRVLNGSGDPLDRYGPLHCGHSVP-LYSRPFNPLE-----RAPIEKTLDVGVRAIN  191
              LLGRV++G G PLD       G+ +P +  + ++++      R PI + L  G+RAI+
Sbjct  95   EALLGRVIDGFGRPLD-------GRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAID  147

Query  192  TLLSVGRGQRMGLFAGSGVGKSVLLGMMARYTSADVIVVGLIGERGREVQEFIEHILGPE  251
            ++ + G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ E
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  252  GLARSVVVAAPADTSPLMRLHGAAYATAIAEYFRDEGKHVLLIMDSLTRVAMAQREISLA  311
               R V+V A +D ++L R+++   AT+IAE+FRD+GK+V+L+ DSLTR A A REI+LA
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  312  IGEPPATKGYPPSVFARLPQLVERAGNGRRGSGSITAFYTVLTEnddpndpiadnaRAIL  371
             GE + +  YPP+VF+ LP+L+ER+G G +  GSITAFYTVL E DD N+P+AD+ R++L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  372  DGHIVLSRRLAEAGHYPAIDIEASISRVMASLVTREQLGQAQRFKALYSRYQRSHDLISV  431
            DGHIVLSRRLAE GHYPAID+ A++SRV + + ++E+   A  ++   + YQ  + LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  432  GAYASGSDPQLDRAIELYPVLESFLQQGM  460
            G Y  G D + D+AI+ YP + +FL+Q+ 
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

1446) fliI in NC_011147


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  235 bits (876),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 168/370 (46%), Positives = 246/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIALSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHI LSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1447) fliI in NC_006511


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  235 bits (876),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 168/370 (46%), Positives = 246/370 (67%), Gaps = 12/370 (3%)

Query  67   SEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVldg-gg  125
            +EVVG+NG + +L P+    G+  G +V A       L+   Q+P+G ALLGRV+DG G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMA-------LRRRHQVPVGEALLGRVIDGFGR  107

Query  126  kpldglpapdTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSG  185
               +   +         + PP  ++ R PI + L TG+RAI+++ T G GQR+G+F+++G
Sbjct  108  PLDGRELPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPG  165

Query  186  VGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL  245
            VGKS LL+M+     AD  V+ LIGERGREV++FI+  L+ + R R V++ A +D ++L 
Sbjct  166  VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALE  225

Query  246  RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  305
            R+++   AT IAE FRD G++V+L+ DSLTRYA A REIALA GE + +  YPP+VF+ L
Sbjct  226  RVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL  285

Query  306  PALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIALSRRLAEAGHYPA  365
            P L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHI LSRRLAE GHYPA
Sbjct  286  PRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA  343

Query  366  IDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLW  425
            ID+ A++SR    + +++H     ++++ L+ +Q    L+ +G Y +G D   DKAI   
Sbjct  344  IDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  426  PQLEAFLQQG  435
            P++ +FL+Q+
Sbjct  404  PDICTFLRQS  413

1448) fliI in NC_009792


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  235 bits (876),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 175/390 (45%), Positives = 258/390 (67%), Gaps = 20/390 (5%)

Query  48   LGATCVIERQDGTETREVESEVVGFNGQRLFLMPLEEVEGILPGARVYAKNIAGEGLQSG  107
            +G  C I   +        +EVVG+NG + +L P+    G+  G +V        +L+  
Sbjct  42   MGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQV-------MALRRR  88

Query  108  KQLPLGPALLGRVldgggkpldglpapdTT--ETGALITQPFNPLQRTPIEHVLDTGVRP  165
             Q+P+G ALLGRV+DG G+PLDG   P+    + +A+   P  ++ R PI + L TG+R+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRA  145

Query  166  INALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG  225
            I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV++FI+  L+
Sbjct  146  IDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLS  205

Query  226  ADGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIA  285
             + R R V++ A +D ++L R+++   AT IAE FRD G++V+L+ DSLTRYA A REIA
Sbjct  206  EETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIA  265

Query  286  LAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARA  345
            LA GE + +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R+
Sbjct  266  LAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRS  323

Query  346  ILDGHIVLSRRLAEAGHYPAIDIEASISRAMTSLITEQHYARVRNFKQLLSSFQRNRDLV  405
            +LDGHIVLSRRLAE GHYPAID+ A++SR    + +++H      +++ L+ +Q    L+
Sbjct  324  LLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLI  383

Query  406  SVGAYAKGSDPMLDKAIALWPQLEAFLQQG  435
             +G Y +G D   DKAI   P++ +FL+Q+
Sbjct  384  RIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

1449) BTI_4020 in NC_021174


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  235 bits (876),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 180/420 (43%), Positives = 284/420 (68%), Gaps = 18/420 (4%)

Query  20   IQGPIIEAPLPDVAIGELCAIRAAAGSDTVIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            + + +++A LP+V +GELC I+++         A+VVG+    A+LS + STAGL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  80   LVPTGERMTIDVAPAMLGAVVDATGGIVETFGAKreagaegaaraaaprrraidaappdy  139
            +++   R  + V+ A+LG V+D+ G  ++                +   ++  DA PP  
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGRPLDG------------RELPEVCWKDYDAMPPPA  129

Query  140  aarrpiERRLATGVRAIDGLLTCGVGQRIGIFAAAGCGKTSLMNMMIEHAAADVYVVALI  199
              R+PI + L TG+RAID++ TCG GQR+GIF+A+G GK++L+ M+ + + AD  V+ LI
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  200  GERGREVSEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVML  259
            GERGREV EF++      +R R V+V ATSDR++++R  A +VATTIAE+FRD G  V+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  260  FLDSMTryaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTEAGSITAFYTVLLE  319
            + DS+TRYARA R++ALA+GE++    YP++VF  LPRLLER G  E GSITAFYTVL+E
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVE  309

Query  320  NEEEPDPIGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSTSRLFDEIAHAPHRAAAMQF  379
             ++  +P++DE+RS++DGH+ LSR+L+ +GH+PAIDVL + SR+F  ++   HR  A  +
Sbjct  310  GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAIL  369

Query  380  RRHLARIDEMQVFLDLGEYRRGENPENDEALDRRPALDAFLQQAIDEASAFDDTLERMRE  439
            RR+LA  +E+++++ +GEY+RG + + D A+D  P + +FL+Q+ DE  + +  +E++++
Sbjct  370  RRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

1450) fliI in NC_008510


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  235 bits (875),  Expect = 6e-63, Method: Compositional matrix adjust.
 Identities = 163/364 (45%), Positives = 255/364 (71%), Gaps = 4/364 (1%)

Query  68   EIVGFEGHVYTLMPLGPIEGIYPEAFVFSSGRKLAIPVGKELLGRVLNGVGRPIDKKGHI  127
            E+VG++G    L P+ +  G+     V +  R+  +PVG  LLGRV++G GRP+D  G+ 
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRE  113

Query  128  ITKEERGPDNDVPNP-LDRPIIRDILMTGVRAIDGILTIGRGQRVGIFsgsgvgkssllg  186
            +    +   + +P P + R  I + LMTG+RAID++ T G GQRVGIFS++GVGKS+LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MIARYTNADINVIALVGERGREVNEFIEIDLGKEGLQKSVVLAATSDAPKMEQVNCALLA  246
            M+    +AD NV+ L+GERGREV EFI++ L+ E  ++ V++ ATSD P +E+V   ++A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TSIAEYFRDQGKHVNLMMDSLTRFAQANREISASNHEPPITRGFSSSVFSKLAKLVERsg  306
            T+IAE+FRD+GK+V L+ DSLTR+A+A REI+ +  E +++  ++++VFS L++L+ER  
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER-T  292

Query  307  tsksggtitgFYTVLTEADEMEDPIADAVRGYIDGHIVLNRKLAEKNHYPAIDVPASLSR  366
                 G+IT+FYTVL E+D+M++P+AD VR+ +DGHIVL+R+LAE+ HYPAIDV A+LSR
Sbjct  293  GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  367  VMARIAPENQNLRAGMIRELISVYDSAEELIRLNAYVSGSDSRVDLAIRKKDKIDRYLKQ  426
            V + ++++++   A+++R  +++Y+  E LIR+  Y  G D+  D AI     I  +L+Q
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  427  KIQE  430
              +E
Sbjct  413  SKDE  416

1451) fliI in NC_008508


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  235 bits (875),  Expect = 6e-63, Method: Compositional matrix adjust.
 Identities = 163/364 (45%), Positives = 255/364 (71%), Gaps = 4/364 (1%)

Query  68   EIVGFEGHVYTLMPLGPIEGIYPEAFVFSSGRKLAIPVGKELLGRVLNGVGRPIDKKGHI  127
            E+VG++G    L P+ +  G+     V +  R+  +PVG  LLGRV++G GRP+D  G+ 
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRE  113

Query  128  ITKEERGPDNDVPNP-LDRPIIRDILMTGVRAIDGILTIGRGQRVGIFsgsgvgkssllg  186
            +    +   + +P P + R  I + LMTG+RAID++ T G GQRVGIFS++GVGKS+LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  187  MIARYTNADINVIALVGERGREVNEFIEIDLGKEGLQKSVVLAATSDAPKMEQVNCALLA  246
            M+    +AD NV+ L+GERGREV EFI++ L+ E  ++ V++ ATSD P +E+V   ++A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  247  TSIAEYFRDQGKHVNLMMDSLTRFAQANREISASNHEPPITRGFSSSVFSKLAKLVERsg  306
            T+IAE+FRD+GK+V L+ DSLTR+A+A REI+ +  E +++  ++++VFS L++L+ER  
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER-T  292

Query  307  tsksggtitgFYTVLTEADEMEDPIADAVRGYIDGHIVLNRKLAEKNHYPAIDVPASLSR  366
                 G+IT+FYTVL E+D+M++P+AD VR+ +DGHIVL+R+LAE+ HYPAIDV A+LSR
Sbjct  293  GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSR  352

Query  367  VMARIAPENQNLRAGMIRELISVYDSAEELIRLNAYVSGSDSRVDLAIRKKDKIDRYLKQ  426
            V + ++++++   A+++R  +++Y+  E LIR+  Y  G D+  D AI     I  +L+Q
Sbjct  353  VFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ  412

Query  427  KIQE  430
              +E
Sbjct  413  SKDE  416

1452) Zmob_1156 in NC_017262


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  234 bits (872),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 162/366 (45%), Positives = 256/366 (70%), Gaps = 5/366 (1%)

Query  62   AEVVGFRGNTTLLMALDADAPHNPGARVEPDRQLSIVHVGDGLLGRVIGALGEPLDNLGP  121
            AEVVG+ G+ +LL ++ + A  + G +V + R+   V VG++LLGRVI+++G PLD  G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GR  112

Query  122  IITDEYWPLVGKMGNP-LNRGRVTQPFDMGVRAINALLTAGVGQRIAIMAGSGVGKSVLM  180
             + +  W   + M  P + R  +TQP+  G+RAI+++ T G GQR++I +++GVGKS L+
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  181  GQMIAGAKADVIVTGLIGERSREVTDFVETKISDDVRPKSvvvavpadhppvLRLRAAMR  240
            + +  ++ AD  V  LIGER+REV +F++  +S++ R + V+V   +D+P++ R+RA   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  241  ATAIAEYFRAKGKNVLLLIDSLTRIAHAQREVGLSLGEPPTIKGYPPSALGLIPRLVERA  300
            AT+IAE+FR +GK V+LL DSLTR A+A RE++L+ GE +    YPP+ ++ +PRL+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  301  GIDIHSKGAITAIYTVLAdgddpddpivdTARAIVDGHIILSRSLAEQGVFPAIDLGKSL  360
            G++   KG+ITA+YTVL +GDD ++P+ D  R+++DGHI+LSR LAE+G +PAID+  +L
Sbjct  293  GMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  361  SRVMSDIISPGHRQAAAHLRRLWSVYEENRDLILMGAYRSGTDASIDEAINRHNDVLDFI  420
            SRV + + S  HRQ AA LRR  ++Y+E   LI +G Y+ G D+  D AI+   D+  F+
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  421  RQGQNE  426
            RQ+++E
Sbjct  411  RQSKDE  416

1453) ZMO0637 in NC_006526


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  234 bits (872),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 162/366 (45%), Positives = 256/366 (70%), Gaps = 5/366 (1%)

Query  62   AEVVGFRGNTTLLMALDADAPHNPGARVEPDRQLSIVHVGDGLLGRVIGALGEPLDNLGP  121
            AEVVG+ G+ +LL ++ + A  + G +V + R+   V VG++LLGRVI+++G PLD  G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GR  112

Query  122  IITDEYWPLVGKMGNP-LNRGRVTQPFDMGVRAINALLTAGVGQRIAIMAGSGVGKSVLM  180
             + +  W   + M  P + R  +TQP+  G+RAI+++ T G GQR++I +++GVGKS L+
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  181  GQMIAGAKADVIVTGLIGERSREVTDFVETKISDDVRPKSvvvavpadhppvLRLRAAMR  240
            + +  ++ AD  V  LIGER+REV +F++  +S++ R + V+V   +D+P++ R+RA   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  241  ATAIAEYFRAKGKNVLLLIDSLTRIAHAQREVGLSLGEPPTIKGYPPSALGLIPRLVERA  300
            AT+IAE+FR +GK V+LL DSLTR A+A RE++L+ GE +    YPP+ ++ +PRL+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  301  GIDIHSKGAITAIYTVLAdgddpddpivdTARAIVDGHIILSRSLAEQGVFPAIDLGKSL  360
            G++   KG+ITA+YTVL +GDD ++P+ D  R+++DGHI+LSR LAE+G +PAID+  +L
Sbjct  293  GMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  361  SRVMSDIISPGHRQAAAHLRRLWSVYEENRDLILMGAYRSGTDASIDEAINRHNDVLDFI  420
            SRV + + S  HRQ AA LRR  ++Y+E   LI +G Y+ G D+  D AI+   D+  F+
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  421  RQGQNE  426
            RQ+++E
Sbjct  411  RQSKDE  416

1454) Tbd_1091 in NC_007404


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  234 bits (874),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 163/350 (47%), Positives = 238/350 (68%), Gaps = 5/350 (1%)

Query  116  RVRQVPVGDSLLGRVLDGAGRPLDGIGPLSLERRVPLY-SRPINPLERAPIRETLDVGVR  174
            R +QVPVG++LLGRV+DG GRPLDG     + ++   Y + P  ++ R PI + L  G+R
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKD--YDAMPPPAMVRQPITQPLMTGIR  144

Query  175  AINGLLTVGRGQRLGLFAGSGVGKSVLLGMMARMTEADVVVVGLIGERGREVKEFIDRIL  234
            AI+++ T G GQR+G+F+++GVGKS LL+M+    +AD  V+ LIGERGREV+EFID  L
Sbjct  145  AIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTL  204

Query  235  GAEGMaravvvaapaDHPPLMRLNGAAYAMSIAEYFRDQGKHVLLIMDSLTRYAMAQREV  294
            + E   R V+V A +D+P+L R+ +   A +IAE+FRD+GK+V+L+ DSLTRYA A RE+
Sbjct  205  SEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREI  264

Query  295  ALAIGEPPATKGYPPSVFAKLPQLAERAGNGRSGSGSITAFFTVLMEGDDQQDPIADAAR  354
            ALA GE + +  YPP+VF+ LP+L ER+G G    GSITAF+TVL+EGDD ++P+AD  R
Sbjct  265  ALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVR  322

Query  355  AILDGHIVLSRDLADAGHYPAIDIEASISRAQPDLLTEEALERTRRFKYLYSRYMRSRDL  414
            ++LDGHIVLSR LA+ GHYPAID+ A++SR  P + ++E  + +  ++   + Y     L
Sbjct  323  SLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELL  382

Query  415  LAVGAYVPGADVVLDEGVRLYPRMQGYLMQGMREQASLDAARDGLEGILG  464
            + +G Y  G D   D ++  YP +  +L Q+  E  + +   + L+ IL 
Sbjct  383  IRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1455) Za10_0626 in NC_013355


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  234 bits (873),  Expect = 8e-63, Method: Compositional matrix adjust.
 Identities = 162/366 (45%), Positives = 256/366 (70%), Gaps = 5/366 (1%)

Query  62   AEVVGFRGNTTLLMALDADAPHNPGARVEPDRQLSIVHVGDGLLGRVIGALGEPLDNLGP  121
            AEVVG+ G+ +LL ++ + A  + G +V + R+   V VG++LLGRVI+++G PLD  G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GR  112

Query  122  IITDEYWPLVGKMGNP-LNRGRVTQPFDMGVRAINALLTAGVGQRIAIMAGSGVGKSVLM  180
             + +  W   + M  P + R  +TQP+  G+RAI+++ T G GQR++I +++GVGKS L+
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  181  GQMIAGAKADVIVTGLIGERSREVTDFVETKISDDVRPKSvvvavpadhppvLRLRAAMR  240
            + +  ++ AD  V  LIGER+REV +F++  +S++ R + V+V   +D+P++ R+RA   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  241  ATAIAEYFRAKGKNVLLLIDSLTRIAHAQREVGLSLGEPPTIKGYPPSALGLIPRLVERA  300
            AT+IAE+FR +GK V+LL DSLTR A+A RE++L+ GE +    YPP+ ++ +PRL+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  301  GIDIHSKGAITAIYTVLAdgddpddpivdTARAIVDGHIILSRSLAEQGVFPAIDLGKSL  360
            G++   KG+ITA+YTVL +GDD ++P+ D  R+++DGHI+LSR LAE+G +PAID+  +L
Sbjct  293  GMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  361  SRVMSDIISPGHRQAAAHLRRLWSVYEENRDLILMGAYRSGTDASIDEAINRHNDVLDFI  420
            SRV + + S  HRQ AA LRR  ++Y+E   LI +G Y+ G D+  D AI+   D+  F+
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  421  RQGQNE  426
            RQ+++E
Sbjct  411  RQSKDE  416

1456) spaL in NC_016830


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  233 bits (869),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 191/417 (46%), Positives = 281/417 (68%), Gaps = 15/417 (3%)

Query  15   LSGPLIEAALSEVVVGEICEVRRHWRSPHVAARAQVIGFKPGAVLLSLLGEAKGLSRESM  74
            +S+ L++A L+ V +GE+C ++           A+V+G++ +  LLS +  + GL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIK------PGEELAEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  75   IVPTGSTLQLTCSDALLGSVVDPQGVIVE-RLAPSMAVAQRDC--PVDADPPSYQQRRPV  131
            +++     Q+  ++ALLG V+D  G  ++ R  P +      C    DA PP+   R+P+
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV------CWKDYDAMPPPAMVRQPI  135

Query  132  VEPLRTGIRVIDGLLTCGVGQRIGIFAAAGSGKTTLINMLIEHTDAEVFVIGLIGERGRE  191
             +PL TGIR ID++ TCG GQR+GIF+A+G GK+TL+ ML +  DA+  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  192  VTEFIEHLRQSPMCNRCVVVYATSDFSSVDRCNSALQATTIAEYFRDQGRRVVLLLDSlt  251
            V EFI+        +RCV+V ATSD ++++R  + + ATTIAE+FRD+G+RVVLL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  252  ryararrdlalaageaPARRGYPASVFDALPRLLERPGVTASGSITAWYTVLLESDDEPD  311
            RYARA R++ALAAGE++    YP++VF ALPRLLER G+   GSITA YTVL+E+DD  +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  312  PIAEEIRSILDGHVYLSRALAAKGHYPAIDVLRSVSRVATQVTSPEVRQlaaatrdtlar  371
            P+A+E+RS+LDGH+ LSR LA +GHYPAIDVL ++SRV   VTS E RQLAA  R  LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  372  lEQLQVFLDMGEYSPGVDAANDHALQRREALSQWLRQPTDQCVEPDETLRSLHELIA  428
             +++++++ +GEY  GVD+  D A++    +   LRQ+ D+   P+  +  LH++++
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1457) invC in NC_019670


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  233 bits (868),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 189/417 (46%), Positives = 283/417 (68%), Gaps = 15/417 (3%)

Query  15   LSGPLIEAALGDVVIGEVCEVRRHWRLPEVAARAQVIGFKPGAVVLSLLGDAKGLSRESM  74
            +S+ L++A L +V +GE+C ++           A+V+G++ +  +LS +  + GL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIK------PGEELAEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  75   IVPTGSILQLTCSDALLGSVVDPQGAIVERLAPSTALAQ---EDYPVDADPPSYQQRRPV  131
            +++     Q+  ++ALLG V+D  G  ++    +  L++    DY  DA PP+   R+P+
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGRPLD----GRELPEVCWKDY--DAMPPPAMVRQPI  135

Query  132  DTPLRTGIRVIDGLLTCGIGQRIGIFAAAGSGKTTLINMLINHTDADVFVIGLIGERGRE  191
              PL TGIR ID++ TCG GQR+GIF+A+G GK+TL+ ML N  DAD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  192  VTEFIEHLRQSEIRSRCVVVYATSDFSSVDRCNSALQATAIAEYFRDQGLRVVLLLDSlt  251
            V EFI+     E R RCV+V ATSD ++++R  + + AT+IAE+FRD+G RVVLL DSLT
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  252  ryararrdlalaageaPARRGYPASVFDALPRLLERPGVTASGSITAWYTVLLESDDEPD  311
            RYARA R++ALAAGE++    YP++VF ALPRLLER G+   GSITA YTVL+E+DD  +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  312  PIAEEIRSILDGHIYLSRALAAKGHYPAIDVLRSVSRvatqvtapqvqqlaaatRETLTR  371
            P+A+E+RS+LDGHI LSR LA +GHYPAIDVL ++SRV   VT+ + +QLAA  R  L+ 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  372  LEQLQVFLDMGEYSPGADAANDQALQRREALYQWLRQPTGERCEPDEALGQLQGVMA  428
             +++++++ +GEY  G D+  D+A++    +   LRQ+ +E C P+  + +L+ +++
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1458) Psefu_3037 in NC_015556


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  233 bits (868),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 177/396 (45%), Positives = 263/396 (67%), Gaps = 10/396 (2%)

Query  26   GRLVKVSGLLLESLGCQRTTGQRCHIEQGDGCLLEAQVVGFNRDITYLMPFKKPVGLGAG  85
            GR+  VS+ LL++       G+ C I  G+     A+VVG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  86   SRVFPAADEASLQIDESWLGRVINGLGEPLDG--LGKLTGRDSLSQELPTVNPLRRRPVE  143
             +V +      + ++E+ LGRVI+G+G PLDG  L  +  +D   + +P   ++ R+P+ 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDY--DAMPP-PAMVRQPIT  136

Query  144  EPLDVGVRAINAMLTLGKGQRVGLFAGSGVGKSVLLGMITRETKADVVVVGLIGERGREV  203
            +PL  G+RAI+++ T G GQRVG+F+++GVGKS LL+M+     AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  204  QEFILHSLGEEGLRKAVVVVAPANESPLMRLKAAELCHSIAAYFRDQGKDVLLLVDSLTR  263
            +EFI  +L+EE  ++ V+VVA ++ ++L R++A  +  +IA +FRD+GK V+LL DSLTR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  264  YAMAQREIALALGEPPATKGYPPSVFGLLPELVEsagngeagsgslsaIYTVLAEGDDQQ  323
            YA A REIALA GE + +  YPP+VF+ LP L+E    G +  GS++A+YTVL EGDD +
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLE--RTGMGEKGSITAFYTVLVEGDDMN  314

Query  324  DPIADCARAILDGHIVLSRRLADVGHYPAIDIAASVSRCMSQVVPVELRRAALQLKELYG  383
            +P+AD  R++LDGHIVLSRRLA+ GHYPAID+ A++SR  + V + E R+ A  L+   +
Sbjct  315  EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLA  374

Query  384  AFEKIRELIPLGGYTPGMDARTDRAVQLAPAIQRFL  419
             ++ +  LI +G Y  G+D+ TD+A++  P I  FL
Sbjct  375  LYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

1459) fliI in NC_014228


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  233 bits (867),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 159/333 (48%), Positives = 227/333 (69%), Gaps = 3/333 (0%)

Query  125  DGAGRPLDGLPAPDTSYRAPLTTTPFNPLQRTPISDVLDVGVRAINSLLTVGRGQRMGLF  184
            DG GRPLDG   P+   +    + P  ++ R PI++ L  G+RAI+S+ T G GQR+G+F
Sbjct  103  DGFGRPLDGRELPEVCWKD-YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIF  161

Query  185  AGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGVEGLSRsvvvaapadv  244
            +++GVGKS LL+M+    +AD  V+ LIGERGREV++FI+  L+ E   R V+V A +D 
Sbjct  162  SAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDR  221

Query  245  spLLRMQGASYATRIAEDFRDRGKHVLLIMDSLTRYSMAQREIALAIGEPPATKGYPPSV  304
            ++L R+++   AT IAE FRD GK+V+L+ DSLTRY+ A REIALA GE + +  YPP+V
Sbjct  222  PALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGV  281

Query  305  FAKLPALVERAGNGVSDGGSITAFYTVLTEGDDQQDPIADAARAILDGHIVLSRSLAESG  364
            F+ LP L+ER+G G  + GSITAFYTVL EGDD ++P+AD  R++LDGHIVLSR LAE G
Sbjct  282  FSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERG  339

Query  365  HYPAIDIAASISRAMTALIDNTHYRRIQFFKQLLSSYQRNRDLINVGAYAAGSDPLLDKA  424
            HYPAID+ A++SR    +  + H +   ++++ L+ YQ    LI +G Y  G D   DKA
Sbjct  340  HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKA  399

Query  425  IELYPYMAQFLQQGIDERSEYDMACTQLQQLIP  457
            I+ YP +  FL+Q+ DE    ++   +L+Q++ 
Sbjct  400  IDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1460) Msip34_0759 in NC_012969


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  233 bits (867),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 187/402 (47%), Positives = 261/402 (65%), Gaps = 25/402 (6%)

Query  67   AEVVGFDGDKLLLMPQSGVEGIVPGAKVFAMDVSDALPKPSHSNPPRRRTSDRARHLPVg  126
            AEVVG++G K LL P ++  G+  G +V A+               RRR     +++PVG
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMAL---------------RRR-----HQVPVG  94

Query  127  dgllgrvvdgagrPLDDLGPLLTQNS-VPLNTRPLNPLMRAPITDVLDVGVRAINSMLTV  185
            ++LLGRV+DG GRPLD  G  L +      ++ P  +++R PIT+ L  G+RAI+S+ T 
Sbjct  95   EALLGRVIDGFGRPLD--GRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATC  152

Query  186  GRGQRMGLFAGSGVGKSVLLGMMARYTTADVIVVGLIGERGREVKEFIEQILGTDGLARS  245
            G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ +   R 
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  246  vvvaapadvpaLMRLQGASYATAIAEFFRNQGKNVLLIMDSLTRYAMAQREIALAIGEPP  305
            V+V A +D PAL R+++   AT+IAEFFR++GK V+L+ DSLTRYA A REIALA GE +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  306  ATKGYPPSVFAKLPALVERAGNGRPGEGSITAFYTVLTEGDDQQDPIADAARAILDGHIV  365
             +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIV
Sbjct  273  VSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  366  LSRSLAESGHYPAIDIEQSISRAMHNITLPEHQKLSRRLKQLNSRYTRSADLINVGAYEA  425
            LSR LAE GHYPAID+  ++SR    +T  EH++L+  L++  + Y     LI +G Y+ 
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  426  GSDPVLDEAIAKHTKIEAFLQQDIAERSDVEHSIAELAAVVA  467
            G D   D AI     I +FL+Q   E  + E  I  L  +++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1461) fliI in NC_014733


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  233 bits (867),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 187/402 (47%), Positives = 261/402 (65%), Gaps = 25/402 (6%)

Query  67   AEVVGFDGDKLLLMPQSGVEGIVPGAKVFAMDVSDALPKPSHSNPPRRRTSDRARHLPVg  126
            AEVVG++G K LL P ++  G+  G +V A+               RRR     +++PVG
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMAL---------------RRR-----HQVPVG  94

Query  127  dgllgrvvdgagrPLDDLGPLLTQNS-VPLNTRPLNPLMRAPITDVLDVGVRAINSMLTV  185
            ++LLGRV+DG GRPLD  G  L +      ++ P  +++R PIT+ L  G+RAI+S+ T 
Sbjct  95   EALLGRVIDGFGRPLD--GRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATC  152

Query  186  GRGQRMGLFAGSGVGKSVLLGMMARYTTADVIVVGLIGERGREVKEFIEQILGTDGLARS  245
            G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+ +   R 
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  246  vvvaapadvpaLMRLQGASYATAIAEFFRNQGKNVLLIMDSLTRYAMAQREIALAIGEPP  305
            V+V A +D PAL R+++   AT+IAEFFR++GK V+L+ DSLTRYA A REIALA GE +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  306  ATKGYPPSVFAKLPALVERAGNGRPGEGSITAFYTVLTEGDDQQDPIADAARAILDGHIV  365
             +  YPP+VF+ LP L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++LDGHIV
Sbjct  273  VSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  366  LSRSLAESGHYPAIDIEQSISRAMHNITLPEHQKLSRRLKQLNSRYTRSADLINVGAYEA  425
            LSR LAE GHYPAID+  ++SR    +T  EH++L+  L++  + Y     LI +G Y+ 
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  426  GSDPVLDEAIAKHTKIEAFLQQDIAERSDVEHSIAELAAVVA  467
            G D   D AI     I +FL+Q   E  + E  I  L  +++
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1462) Neut_0742 in NC_008344


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  233 bits (867),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 171/389 (44%), Positives = 260/389 (67%), Gaps = 35/389 (8%)

Query  68   AEVVGFSGERLFLMPSGDIYGLTPGAKVVPVEYTGTPPRIGAIQHPRRRAADRAKHISVG  127
            AEVVG++G + +L P     GL  G +V+++               RRR      +++VG
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMAL---------------RRR-----HQVPVG  94

Query  128  PELLGRVLNGVGEPLDRLGPLQCGHNVP-LYGRPFNPLE-----RAPIEKILDVGVRAIN  181
              LLGRV++G G PLD       G+++P +  + ++++      R PI + L  G+RAI+
Sbjct  95   EALLGRVIDGFGRPLD-------GRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAID  147

Query  182  TLLSVGRGQRMGLFAGSGVGKSVLLGMMARYTSADVIVVALIGERGREVQEFIETILGEE  241
            ++ + G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV+EFI+  L+EE
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  242  GLARSVVVAAPADTSPLMRLHGAAYATAIAEYFRDEGKHVLLIMDSLTRFAMAQREISLA  301
               R V+V A +D ++L R+++   AT+IAE+FRD+GK+V+L+ DSLTR+A A REI+LA
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  302  IGEPPATKGYPPSVFARLPQLVERAGNGRRGSGSITAFYTVLaenddpndpiadnaraIL  361
             GE + +  YPP+VF+ LP+L+ER+G G +  GSITAFYTVL E DD N+P+AD+ R++L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  362  DGHIVLSRHLADAGHYPAIDIESSISRVMASLVTREQLGQAQRFKALYSRYQRSHDLISV  421
            DGHIVLSR+LA+ GHYPAID+ +++SRV + + ++E+   A  ++   + YQ  + LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  422  GAYISGTDPQLDQAIALYPALESFLQQGM  450
            G Y  G D + D+AI  YP + +FL+Q+ 
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSK  414

1463) fliI in NC_017249


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  232 bits (865),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 177/399 (45%), Positives = 270/399 (68%), Gaps = 13/399 (3%)

Query  46   LGELIGVNSGGKPQIGEVVRIDSEGIIAKPFDRQFAGGLGSVAYRMP---PLSFAPDPSW  102
            +GEL  +++G   +++EVV I++   +  PF    ++GL      M+       + + + 
Sbjct  42   MGELCCIKPGE--ELAEVVGINGSKALLSPFTS--TAGLHCGQQVMALRRRHQVPVGEAL  97

Query  103  KGRVINALGAPLDGQGPLTPGsravsaeaeapaamrrarvHKPLRTGVRVIDLFAPICAG  162
             GRVI+++G PLDG+    P       +A +P+AM R  + +PL TG+R ID  A    G
Sbjct  98   LGRVIDGFGRPLDGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEG  155

Query  163  QRVGIFAGSGVGKSTLLAMLARSQGFDTVVLALVGERGREVREFIEDVLGAN-RSRAITI  221
            QRVGIF+++GVGKSTLLAML  + + D+ VL L+GERGREVREFI+  L+ + R R + +
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  222  VSTGDESPMMRRLAPKTAMAVAEYFRDRGESVLLVVDSITRFAHAAREVALAAGEPAVAR  281
            V+T+D +++ R  A   A ++AE+FRD G  V+L+ DS+TR+A+AARE+ALAAGE AV+ 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  282  GYAPTVFTDLPRLLERAGPGEEGSGTITGIFSVLVDGDDHNEPIADTIRSTLDGHIVLSR  341
             Y+P VF+ LPRLLER+G GE GS  IT++++VLV+GDD NEP+AD +RS LDGHIVLSR
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGS--ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  342  HIADQARYPAVDVLASVSRLAHNVWDPEERELVSKLRTMIAKYEDTRDLRLMGGYQSGRD  401
            ++A++++YPA+DVLA++SR+   V   E+R+L + LR  +A Y++   L  +G YQ G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  402  SGLDQAVDMVPKIYSAMRQDASAGPSADPFRE-LRDMLK  439
            ++ D+A+D  P I + +RQ      +++ + E L+++L 
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1464) fliI in NC_016594


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  232 bits (866),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 181/413 (44%), Positives = 273/413 (67%), Gaps = 15/413 (3%)

Query  16   SGCSRFGRVTAVLGLLVEV---GGIEKELSVGGRCIVESRDGRQVPCEVVGFRQGRALLM  72
             G  R GR+  V + L++    G +  EL     CI   + G +++ EVVG+  ++ALL 
Sbjct  17   DGYCRWGRIQDVSATLLNAWLPGVFMGELC----CI---KPGEELA-EVVGINGSKALLS  68

Query  73   PFGSIDGVGLGCRALVSDSQPMVFPTEAWLGRVINALGEPVDGKGPLPKGTHGVPIRNNP  132
            PF S  G+  G + +    +  V   EA LGRVI+++G P+DG+  LP           P
Sbjct  69   PFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWK-DYDAMP  126

Query  133  PPAHSRARVGEKLDLGIRAINAFLTCCRGQRMGIFAgsgvgkssvmsmLARFSGAEVAVI  192
            PPA  R  + + L  GIRAI++  TC  GQR+GIF+++GVGKS++++ML   ++A+  V+
Sbjct  127  PPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVL  186

Query  193  GLIGERGRELQEFITEDLGEEGLARSVVVCATSDEAPLMRRQAAYMTLAVAEAFRDAGCN  252
             LIGERGRE++EFI   L+EE   R V+V ATSD ++L R +A +++ ++AE FRD G  
Sbjct  187  VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR  246

Query  253  VLCMMDSVTRFAMAQREIGLSAGEPPTTKGYPPTVFAELPRLLERAGPGLSGSGSITGLF  312
            V+ + DS+TR+A A REI+L+AGE + +  YPP VF+ LPRLLER+  G++  GSIT+++
Sbjct  247  VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT--GMGEKGSITAFY  304

Query  313  TVLVEGDDHNEPIADAVRGILDGHIVLERQIGERGRYPAINILRSVSRTMPGCNSPMENE  372
            TVLVEGDD NEP+AD VR++LDGHIVL R+++ERG+YPAI++L ++SR  P   S  + +
Sbjct  305  TVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ  364

Query  373  LVNHARRLMSSYDNMAEMIRLGAYRKGTDPQVDEAIHFQPALEAFLKQGKREA  425
            L    RR ++ Y+++  +IR+G Y++G D + D AI+  P + +FL+Q+K E 
Sbjct  365  LAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEV  417

1465) fliI in NC_002696


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  232 bits (864),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 176/387 (46%), Positives = 259/387 (67%), Gaps = 11/387 (2%)

Query  55   AEVVGFRETRALLMPFGPVEGVGPGAEIRIVPEGAVVRPTKAWLGRIINAFGEPIDGLGP  114
            AEVVG+  ++ALL PF +  G+  G ++  +     V    A LGR+I++FG P+DG   
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RE  113

Query  115  LPQGEVPYP-LKTPPPPAHARGRVGERLDLGVRSMNVFTTTCRGQRLGIFAGSGVGKSVL  173
            LP  EV      + PPPA  R  + + L  G+R+++  +T   GQR+GIF+++GVGKS L
Sbjct  114  LP--EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  174  LSMLAKEATCDAVVVGLIgergrevrefveeTLGEEGLRRAVVVVATSDEPALTRRQAAY  233
            L+ML + +  D+ V+ LIGERGREVREF++ TL+EE  +R V+VVATSD PAL R +A +
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  234  MTLAISEFMRDQDQEVLCLMDSVTRFAMAQREIGLAAGEPPTTKGYTPTVFTELPKLLER  293
            ++ +I+EF RD+++ V+ L DS+TR+A A REI+LAAGE + +  Y P VF+ LP+LLER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  294  AGPGPIRPDGTTAAPITALFTVLVDGDDHNEPIADATRGILDGHIVMERAIAERGRFPAI  353
            +G G         ++ITA++TVLV+GDD NEP+AD  R++LDGHIV+ R +AERG++PAI
Sbjct  292  TGMG-------EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI  344

Query  354  NVLKSISRTMPGCQHPHERDIVKGARQVMSAYSNMEELIRIGAYRAGADPVVDRAIRLNP  413
            +VL ++SR  P     ++R++    R+ ++ Y ++E LIRIG Y+ G D   D+AI   P
Sbjct  345  DVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  414  AIEAFLSQDKEEATSLDDSFGMLGQIL  440
             I +FL Q K+E  + +  +  L QIL
Sbjct  405  DICTFLRQSKDEVCGPELLIEKLHQIL  431

1466) fliI in NC_011916


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  232 bits (864),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 176/387 (46%), Positives = 259/387 (67%), Gaps = 11/387 (2%)

Query  55   AEVVGFRETRALLMPFGPVEGVGPGAEIRIVPEGAVVRPTKAWLGRIINAFGEPIDGLGP  114
            AEVVG+  ++ALL PF +  G+  G ++  +     V    A LGR+I++FG P+DG   
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RE  113

Query  115  LPQGEVPYP-LKTPPPPAHARGRVGERLDLGVRSMNVFTTTCRGQRLGIFAGSGVGKSVL  173
            LP  EV      + PPPA  R  + + L  G+R+++  +T   GQR+GIF+++GVGKS L
Sbjct  114  LP--EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  174  LSMLAKEATCDAVVVGLIgergrevrefveeTLGEEGLRRAVVVVATSDEPALTRRQAAY  233
            L+ML + +  D+ V+ LIGERGREVREF++ TL+EE  +R V+VVATSD PAL R +A +
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  234  MTLAISEFMRDQDQEVLCLMDSVTRFAMAQREIGLAAGEPPTTKGYTPTVFTELPKLLER  293
            ++ +I+EF RD+++ V+ L DS+TR+A A REI+LAAGE + +  Y P VF+ LP+LLER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  294  AGPGPIRPDGTTAAPITALFTVLVDGDDHNEPIADATRGILDGHIVMERAIAERGRFPAI  353
            +G G         ++ITA++TVLV+GDD NEP+AD  R++LDGHIV+ R +AERG++PAI
Sbjct  292  TGMG-------EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI  344

Query  354  NVLKSISRTMPGCQHPHERDIVKGARQVMSAYSNMEELIRIGAYRAGADPVVDRAIRLNP  413
            +VL ++SR  P     ++R++    R+ ++ Y ++E LIRIG Y+ G D   D+AI   P
Sbjct  345  DVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  414  AIEAFLSQDKEEATSLDDSFGMLGQIL  440
             I +FL Q K+E  + +  +  L QIL
Sbjct  405  DICTFLRQSKDEVCGPELLIEKLHQIL  431

1467) fliI in NC_008209


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  231 bits (863),  Expect = 5e-62, Method: Compositional matrix adjust.
 Identities = 157/387 (41%), Positives = 261/387 (68%), Gaps = 11/387 (2%)

Query  45   IGDLVVVYRQGEPLSGEILQLDGDTLVILPDQDAEGVALNDRAALLEARGIAP-SQGWIG  103
            +G+L  + + GE L+ E++ ++G   ++ P   + G+   ++   L  R   P +++ +G
Sbjct  42   MGELCCI-KPGEELA-EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  104  RIIDPFGNPIDGKPLLRGAEA--RSLRSAPPEPALRRPMGTRLNTGMSVLNTMLPVVKGQ  161
            R+ID FG P+DG+ L   +E   +   + PP + +R+P+   L TG+  ++++     GQ
Sbjct  100  RVIDGFGRPLDGREL---PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  162  RVGLFAGSGVGKSSLLGHLAQNMTADVVVVALIGERGRELRHFVEEVLGPEGLKRSVVIC  221
            RVG+F+++GVGKS+LL+ L +   AD  V+ LIGERGRE+R+F++  L+ E  KR V++ 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  222  ATSDQSPLIRRRCAWAAMSVAEHFRDMGLSALILADSITRFAEAHREVAVASGEAPVLRG  281
            ATSD+++L R R    A ++AE FRD G   ++LADS+TR+A A RE+A+A+GE++V   
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  282  YPPSTAHLIMSLCERAGPGEGAQGDITGIFSVLVAGSDMEEPIADILRGVLDGHIVLNRE  341
            YPP+    +  L ER+G GE  +G IT++++VLV G DM+EP+AD +R++LDGHIVL+R 
Sbjct  277  YPPGVFSALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  342  IAERGRYPAIDVLKSISRSLPAAADDIENELISIVRRYLSIYEQNEMMIRAGLYSQGSDP  401
            +AERG+YPAIDVL ++SR +P  + + + +L +I+RR L++Y++ E++IR G Y +G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  402  DIDAAIQVWSDLDAFFAKPEKQDVSNS  428
            D D AI+  +D+ +F+ +  K++V  +
Sbjct  395  DTDKAIDTYPDICTFL-RQSKDEVCGP  420

1468) Astex_0604 in NC_014816


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  231 bits (862),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 190/447 (43%), Positives = 286/447 (64%), Gaps = 20/447 (4%)

Query  20   MQDLLHTAR-NIDPMQVY---GRVAVVNGLLIEAKGGMSFMEVGSRCEIMRRHDTPLPVE  75
             ++L++  R +  P + Y   GR+  V++ L++A     FM  G  C I   ++ +   E
Sbjct  2    KNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFM--GELCCIKPGEELA---E  56

Query  76   VVGFREDRALMMPFGPVEGVAPGAEIRISNEGAKVYPSTAWLGRIIDAFGDPIDGLGPLP  135
            VVG+   +AL+ PF +  G+  G ++       +V  + A LGR+ID+FG P+DG   LP
Sbjct  57   VVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELP  115

Query  136  KGG-IGYPLKAAPPPAHSRARVGERLDLGVRAMNVFTTCCRGQRLGVFAGSGVGKSVLLS  194
                 +Y   A PPPA  R  + + L  G+RA++  +TC  GQR+G+F+++GVGKS LL+
Sbjct  116  EVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  195  MLAREAACDAVVVGLIgergrevrefveeTLGEAGISRAIVVVATSDEPALKRRQAAYMT  254
            ML   +  D+ V+ LIGERGREVREF++ TL+E    R ++VVATSD PAL R +A +++
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  255  LALSEFLRDQGLEVLCLMDSVTRFAMAQREIGLATGEPPTTKGYTPTCFAELPKLLERAG  314
             +++EF+RD+G  V+ L DS+TR+A A REI+LA+GE + +  Y P  F+ LP+LLER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  315  PGPLLPDGTQTGPITGLFTVLVDGDDHNEPIADAVRGILDGHIVMSRSIAERGRFPAIDV  374
             G       + G+IT+++TVLV+GDD NEP+AD VR++LDGHIV+SR +AERG++PAIDV
Sbjct  294  MG-------EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDV  346

Query  375  LKSISRTMPGCQTLAEREVVRNARAVMSAYTNMEELIRIGAYRTGADPLVDRAIQLNPSI  434
            L ++SR  P   +  +R++    R  ++ Y ++E LIRIG Y+ G D   D+AI+  P I
Sbjct  347  LATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDI  406

Query  435  EQFLSQSPDEATSLDDSFTLLGQILSS  461
              FL QS DE  + +  +  L QIL+ 
Sbjct  407  CTFLRQSKDEVCGPELLIEKLHQILTE  433

1469) Veis_1116 in NC_008786


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  231 bits (862),  Expect = 7e-62, Method: Compositional matrix adjust.
 Identities = 180/414 (44%), Positives = 265/414 (65%), Gaps = 24/414 (5%)

Query  49   VGAQCMVGMPGQAPVLAEVVGFSGERTFLMPAGDTHGLCSGARVLPCAPDMPGPVWGEPS  108
            +G  C +  PG+   LAEVVG++G +++L P   T GL  G +V++              
Sbjct  42   MGELCCI-KPGEE--LAEVVGINGSKALLSPFTSTAGLHCGQQVMA--------------  84

Query  109  RPIRRTGVLRLPMGNGLLGRVVDAQGLPLDHRGPVQDTVLAPMARDRINAMERDPVRQPL  168
              +RR    ++P+G++LLGRV+D+ G PLD R  + +            AM R+P+ QPL
Sbjct  85   --LRRRH--QVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPL  139

Query  169  DTGVRAINALLTVGRGQRLGLLAGSGVGKSVLLGMMARYTGADVIVVGLIGERGREVKEF  228
             TG+RAI+++ T G GQR+G+++++GVGKS LL+M+    +AD  V+ LIGERGREV+EF
Sbjct  140  MTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREF  199

Query  229  VEDILGADGRARSvvvaapadappLLRMQGASYATAVAEHFRDQGRHVLLLLDSLTRYAM  288
            ++  L+ + R R V+V A +D P+L R+++   AT++AE FRD+G++V+LL DSLTRYA 
Sbjct  200  IDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYAR  259

Query  289  AQREIALAIGEPPATKGYPPSCFARLPQLVERSGNGLQGQGSITAFHTVLTEGDDPHDPV  348
            A REIALA GE + +  YPP+ F+ LP+L+ER+G G   +GSITAF TVL EGDD ++P+
Sbjct  260  AAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPL  317

Query  349  ADAARAILDGHIVLSRALAEAGHFPAIDIEQSSSRVMHRLVPDRHLELARRFRALYSRYQ  408
            AD  R++LDGHIVLSR LAE GH+PAID+  + SRV   + ++ H +LA  +R   + YQ
Sbjct  318  ADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  409  KGRDLLQVGAYASGSDPALDEAIRLQPQMAQFLQQDLHQAATLEQSVAALAAAL  462
                L+++G Y  G D   D AI   P++  FL+Q  ++    E  +  L   L
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1470) Hhal_0495 in NC_008789


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  230 bits (858),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 168/335 (51%), Positives = 229/335 (69%), Gaps = 13/335 (3%)

Query  100  QARVGEELLGRVidgggqpidgggpLKARE-----RTPLMAEPINPLERAPIAAPLDVGV  154
            Q  VGE LLGRVIDG G+P      L +RE     +    A P  ++ R PI+ PL  G+
Sbjct  90   QVPVGEALLGRVIDGFGRP------LDGRELPEVCWKDYDAMPPPAMVRQPITQPLMTGI  143

Query  155  RSINALFTVGRGQRMGLFAGSGVGKSVLLGMMTRYTTADVVVVGLIGERGREVREFITEI  214
            R+I+++ T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREVREFI   
Sbjct  144  RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFT  203

Query  215  LGRHGLARAVVVAAPADTSPLFRLHGAMRATSIAEYFRDQGYNVLLLMDSLTRYAQAQRE  274
            L+ +   R V+V A +D ++L R+++   AT+IAE+FRD+G  V+LL DSLTRYA+A RE
Sbjct  204  LSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAARE  263

Query  275  IGLAIGEPPTTKGYPPSVFGLLPRLVERAGNGPDGGGSITAFYTVLVEGDDQQEPIADSA  334
            I+LA GE + +  YPP+VF+ LPRL+ER+G G    GSITAFYTVLVEGDD +EP+AD  
Sbjct  264  IALAAGETAVSGEYPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEV  321

Query  335  RAILDGHLVLSRSLADSGVYPAVDVEASISRAMMAITEGRHQKAAQRFRELYAAYRQNED  394
            R++LDGH+VLSR LA+ G YPA+DV A++SR    +T   H++ A  +R   A Y++ E 
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  395  LISVGAYQRGSDPLVDQAIQYQPRLRAFLQQDVSE  429
            LI +G YQRG D   D+AI+  P + +FL+Q   E
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1471) fliI1 in NC_005085


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  230 bits (859),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 158/331 (48%), Positives = 230/331 (70%), Gaps = 3/331 (0%)

Query  120  RQVPVGASLLGRVLDSLGRPLDGLGPIHPDAWFPLYSQPMNPLHRTPVHDVLDVGVRAIN  179
            +QVPVG +LLGRV+D++GRPLDG   +    W    + P  ++ R P+ + L  G+RAI+
Sbjct  89   HQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAID  147

Query  180  GLLTVGRGQRLGLFAGSGVGKSVLLGMMARFTKADVVVVGLIGERGREVKDFIENILGEE  239
            ++ T G GQR+G+F+++GVGKS LL+M+     AD  V+ LIGERGREV++FI+  L+EE
Sbjct  148  SVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEE  207

Query  240  GRARSVVVAAPADMPPLMRLHGAAYATALAEYFRSQGLDVLLLMDSVTRFAMAQREIALA  299
             R R V+V A +D P+L R+++   AT++AE+FR +G  V+LL DS+TR+A A REIALA
Sbjct  208  TRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALA  267

Query  300  IGEPPVTRGYPPSVFARLPQLIERAgngeegggSITGFYTVLSEGDDQQDPIADSARAIL  359
             GE +V+  YPP+VF+ LP+L+ER+  G    GSIT+FYTVL EGDD ++P+AD  R++L
Sbjct  268  AGETAVSGEYPPGVFSALPRLLERT--GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLL  325

Query  360  DGHFVLSRDLAEAGHYPAIDIEQSISRvmvdvvpqqqmdLARHFKQLYSRYQRNRDLISV  419
            DGH+VLSR LAE GHYPAID+  ++SRV   V ++++ +LA  +++  + YQ    LI +
Sbjct  326  DGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRI  385

Query  420  GAYVSGSDPVLDDAMRRQLPMVSFLTQPMHE  450
            G Y  G D   D A+     + +FL Q+ +E
Sbjct  386  GEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1472) Pden_2109 in NC_008686


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  230 bits (858),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 167/386 (44%), Positives = 261/386 (68%), Gaps = 6/386 (1%)

Query  46   SMRSGQVLNGEIVALHSDQAVILPEGPMDGLSISTRV-ELVFAPMLAPANAWIGRIIDPF  104
             +++G+ L +E+V++++ +A++ P  +  GL  + +V  L     ++ ++A +GR+ID F
Sbjct  47   CIKPGEEL-AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGF  105

Query  105  GRPLDGRPLVAGGEERGFRpppppaaSRNRLGGRLDTGLAVFDTLLPLVRGQRMGLFAGS  164
            GRPLDGR L +    +++ + PPPA  R+ +   L TG+  +D++     GQR+G+F+++
Sbjct  106  GRPLDGREL-PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  165  GVGKSTLLSMLAKGVPADVVVIALVGERGRELREFVEETLGEEGMARSVVVAATSDQPPL  224
            GVGKSTLL+ML ++  AD  V+ L+GERGRE+REF++ TL+EE   R V+V ATSD+P+L
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  225  MRRRCAWAAMTVAEHFRDQGRHVLFLADSITRFAEAHREIALAAGESPSYRGFPPSTSHL  284
             R R    A T+AE FRD+G++V++LADS+TR+A A REIALAAGE++    +PP+    
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  285  IMSLAERSGPGPAGAGDITAIFSVLVAGSDMEEPVADILRGVLDGHVVLDRAIAERGRFP  344
            +  L ER+G G  G+  ITA+++VLV G DM+EP+AD +R++LDGH+VL R +AERG++P
Sbjct  285  LPRLLERTGMGEKGS--ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  345  AVDVLRSVSRSLPQAASADENALIARARATLGTYAESELMIRAGLYAPGSDPALDEAVRL  404
            A+DVL ++SR +P  +S ++  L A  R  L+ Y E EL+IR G Y  G D   D A+  
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  405  YPALDAFFTRRGGDARQSFALLAEAL  430
            YP + +F+ +  ++   +  LL E L
Sbjct  403  YPDICTFLRQSKDEVCGP-ELLIEKL  427

1473) Cseg_3529 in NC_014100


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  230 bits (856),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 176/387 (46%), Positives = 259/387 (67%), Gaps = 11/387 (2%)

Query  78   AEVVGFRETRALLMPFGPVEGVAPGAEIRIVPEGAVVRPTKAWLGRIINAFGEPIDGLGP  137
            AEVVG+  ++ALL PF +  G+  G ++  +     V    A LGR+I++FG P+DG   
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RE  113

Query  138  LPQGEVPYP-LKTAPPPAHARGRVGERLDLGVRSMNVFTTTCRGQRLGIFAGSGVGKSVL  196
            LP  EV      + PPPA  R  + + L  G+R+++  +T   GQR+GIF+++GVGKS L
Sbjct  114  LP--EVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  197  LSMLAKEATCDAVVVGLIgergrevrefveeTLGEEGLRRAVVVVATSDEPALTRRQAAY  256
            L+ML + +  D+ V+ LIGERGREVREF++ TL+EE  +R V+VVATSD PAL R +A +
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  257  MTLAISEYMRDQDQEVLCLMDSVTRFAMAQREIGLAAGEPPTTKGYTPTVFTELPKLLER  316
            ++ +I+E+ RD+++ V+ L DS+TR+A A REI+LAAGE + +  Y P VF+ LP+LLER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  317  AGPGPIRADGTTAAPITALFTVLVDGDDHNEPIADATRGILDGHIVMERAIAERGRFPAI  376
            +G G         ++ITA++TVLV+GDD NEP+AD  R++LDGHIV+ R +AERG++PAI
Sbjct  292  TGMG-------EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAI  344

Query  377  NVLKSISRTMPGCQLPHERDIVKGARQVMAAYSNMEELIRIGAYRAGADPVVDRAIRLNP  436
            +VL ++SR  P     ++R++    R+ +A Y ++E LIRIG Y+ G D   D+AI   P
Sbjct  345  DVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYP  404

Query  437  AIEAFLSQDKEEATSLDDSFGLLGQIL  463
             I +FL Q K+E  + +  +  L QIL
Sbjct  405  DICTFLRQSKDEVCGPELLIEKLHQIL  431

1474) fliI in NC_013858


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  230 bits (857),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 166/383 (44%), Positives = 258/383 (68%), Gaps = 8/383 (2%)

Query  60   EVVGFRQGRALAMPFGALDGVGLGC--RALVAGDQAMIYPTDAWLGRVVNALGEPVDGKG  117
            EVVG+  ++AL  PF +    GL C  + +    +  +   +A LGRV++++G P+DG+ 
Sbjct  56   EVVGINGSKALLSPFTS--TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE  113

Query  118  PLPKGPQGTPIRNTPPNAHSRARVGEKLDLGIRAINAFLTCCRGQRMGIFAgsgvgkssv  177
             LP           PP A  R  + + L  GIRAI++  TC  GQR+GIF+++GVGKS++
Sbjct  114  -LPEVCW-KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  178  msmLARFSAAEVAVIGLIGERGRELQEFITEDLGEEGLARSVVVCATSDEAPLMRKQAAY  237
            ++ML   + A+  V+ LIGERGRE++EFI   L+EE   R V+V ATSD ++L R +A +
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  238  MTLAVAEHFRDQGRDVLCMMDSVTRFAMAQREIGLSAGEPPTTKGYPPTVFAELPRLLER  297
            ++ ++AE FRD+G+ V+ + DS+TR+A A REI+L+AGE + +  YPP VF+ LPRLLER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  298  AGPGVVGSGTITGLFTVLVDGDDHNEPIADAVRGILDGHIVMERQIGERGRYPAINILRS  357
            +G G    G+IT+++TVLV+GDD NEP+AD VR++LDGHIV+ R+++ERG+YPAI++L +
Sbjct  292  TGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  358  VSRTMPGCNTANENELVGHARRLLSSYDNMAEMIRLGAYRRGTDPQVDEAIHFQPALEAF  417
            +SR  P   + ++ +L +  RR L+ Y+++  +IR+G Y+RG D + D AI+  P + +F
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  418  LKQGKREATDLETSYAMLAEIFG  440
            L+Q+K E  + E     L +I+ 
Sbjct  410  LRQSKDEVCGPELLIEKLHQILT  432

1475) fliI1 in NC_016587


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  230 bits (856),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 166/383 (44%), Positives = 258/383 (68%), Gaps = 8/383 (2%)

Query  60   EVVGFRQGRALAMPFGALDGVGLGC--RALVAGDQAMIYPTDAWLGRVVNALGEPVDGKG  117
            EVVG+  ++AL  PF +    GL C  + +    +  +   +A LGRV++++G P+DG+ 
Sbjct  56   EVVGINGSKALLSPFTS--TAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE  113

Query  118  PLPKGPHGTPIRNNPPNAHSRARVGEKLDLGIRAINAFLTCCRGQRMGIFAgsgvgkssv  177
             LP           PP A  R  + + L  GIRAI++  TC  GQR+GIF+++GVGKS++
Sbjct  114  -LPEVCW-KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  178  msmLARFSAAEVAVIGLIGERGRELQEFITEDLGEEGLARSVVVCATSDEAPLMRKQAAY  237
            ++ML   + A+  V+ LIGERGRE++EFI   L+EE   R V+V ATSD ++L R +A +
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  238  MTLAVAEHFRDQGRDVLCMMDSVTRFAMAQREIGLSAGEPPTTKGYPPTVFAELPRLLER  297
            ++ ++AE FRD+G+ V+ + DS+TR+A A REI+L+AGE + +  YPP VF+ LPRLLER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  298  AGPGVVGAGTITGLFTVLVDGDDHNEPIADAVRGILDGHIVMERQIGERGRYPAINILRS  357
            +G G    G+IT+++TVLV+GDD NEP+AD VR++LDGHIV+ R+++ERG+YPAI++L +
Sbjct  292  TGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  358  VSRTMPGCNTPNENELVGHARRLLSSYDNMAEMIRLGAYRRGSDPQVDEAIHFQPALEAF  417
            +SR  P   + ++ +L +  RR L+ Y+++  +IR+G Y+RG D + D AI+  P + +F
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  418  LKQGKREATDLETSYAMLAEIFG  440
            L+Q+K E  + E     L +I+ 
Sbjct  410  LRQSKDEVCGPELLIEKLHQILT  432

1476) fliI in NC_016596


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  229 bits (853),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 158/368 (43%), Positives = 252/368 (69%), Gaps = 4/368 (1%)

Query  57   LCETIGFRQGRTLLMAFDNLDGVAEGCAAVTDDTAFTLRPGPGWLGRVVNALGEPIDGRG  116
            L E +G+  +++LL +F +  G+  G   ++      +  G + LGRV++++G P+DGR 
Sbjct  54   LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE  113

Query  117  PLRNGHHarplraapppayarrrVGAKMDTGVRAIDVFTPICRGQRMGVFAGSGVGKSTL  176
             L +         +PP+   +    + M TG+RAID  +    GQR+G+F+++GVGKSTL
Sbjct  114  -LPEVCWKDYDAMPPPAMVRQPITQPLM-TGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  177  LSMVARHAGADAIVIGLVGERGREVQEFIQDDLGADGLARSVVIVATSDEPPLMRRQAAY  236
            L+M+   ++AD+ V+ L+GERGREV+EFI+  L+ +   R V++VATSD P+L R +A +
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  237  LCLTVAEELRDRGLHVLCLIDSVTRFAMAQREIGLAAGEPPTAKSYPPSVFAELPKLMER  296
            +  T+AE +RD G +V+ L DS+TR+A A REI+LAAGE + +  YPP+VF+ LP+L+ER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  297  AGPGQEGQGDITGIFTVLVDGDDHDEPIADAVRGILDGHVVLDRRIAEQGRYPAVNVLRS  356
            +G G+  +G IT+++TVLV+GDD +EP+AD VR++LDGH+VL RR+AE+G+YPA++VL +
Sbjct  292  TGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  357  VSRLLPGCHTAEQNTLLRRARSLAATYDNMRELVRIGAYKQGTDAEVDDAVALNPALEEF  416
            +SR++P   + E+  L    R   A Y+++  L+RIG Y++G D++ D A+   P +  F
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  417  LRQGKDDA  424
            LRQ+KD+ 
Sbjct  410  LRQSKDEV  417

1477) Adeh_1596 in NC_007760


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  229 bits (852),  Expect = 4e-61, Method: Compositional matrix adjust.
 Identities = 194/416 (47%), Positives = 288/416 (70%), Gaps = 6/416 (1%)

Query  5    LGRVRTALGEAAPLPLRGRVTRLTGLVLEAAVGGVRQGEAVELRAPGREPLLAEVVGLRD  64
            + R+R     +     +GR+  +++ +L+A + GV  GE   ++ PG E  LAEVVG+ +
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGING  62

Query  65   DRAVLVPFGELGGVGLDAEVIPTGRPHAIRvgpgllgrvldglgrpldgAPLPAGLEEW-  123
             +A+L PF   +G+  + +V++  R H + VG +LLGRV+DG+GRPLDG  LP     W 
Sbjct  63   SKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV--CWK  120

Query  124  AVDrpapnplarrpvaaplplGVRVLDGLLTAGEGQRIGLFAGSGVGKSTLLGQLARGAR  183
              D  +P ++ R+P++ PL  G+R +D++ T GEGQR+G+F+++GVGKSTLL+ L  ++ 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  184  ADLCVVCLVGERGREVREFLEGPLGADGLARSVVVAATSDAPALVRLKAAHVATAVAEWF  243
            AD  V+ L+GERGREVREF++  L+ +   R V+V ATSD PAL R++A  VAT++AE F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  244  AERGDRVLLLVDSVTRYARALREVGLAAGEPPARQGYPPSVFAALPRLLERAGNRARGGI  303
             + G RV+LL DS+TRYARA RE++LAAGE +    YPP+VF+ALPRLLER+G   +G+I
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  304  TAVYTVLVAGGDLEEPIADEVRGILDGHVVLDRAVAAGGRFPAVDPLQSLSRVMPAVAGP  363
            TA YTVLV G+D++EP+ADEVR++LDGH+VL R +A  G++PA+D L +LSRV P V++ 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  364  DHlaaagrvrallaaharvrdlvalGAYRAGGDPEADLALARLPALEAFLRQPLGE  419
            +H   A+ +R  LA    V  L+ +G Y+ G D ++D A+   P + +FLRQ+ +E
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1478) xsaS in NC_013722


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  229 bits (852),  Expect = 4e-61, Method: Compositional matrix adjust.
 Identities = 180/424 (43%), Positives = 279/424 (66%), Gaps = 32/424 (7%)

Query  11   AKVDVISGQTLRVRLRNVAVGEICTVYQSTFSGEPIGMAQVVALSGDTTVLSTLNPVEGF  70
            ++++ +S+  L  +L  V +GE+C +  +        +A+VV+++G  ++LS + +  G+
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGE------ELAEVVGINGSKALLSPFTSTAGL  76

Query  71   RRDFVVQPTGKRATVRMSVDMLGTVLDANGRIVERFSESPDAPVGEKSDSPCIANTNGAP  130
            + +  V +  +R  V ++  +LG V+D+ GR ++          G      C  + ++ P
Sbjct  77   HCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD----------GRELPEVCWKDYDAMP  126

Query  131  FSDEPQEMPLDVAGPRYTDRNPHAESLWTGIRAIDGLLTCAIGQRVGIFaaagsgkssll  190
                P  M           R+P +++L TGIRAID++ TC+ GQRVGIF+A+G GKS+LL
Sbjct  127  ----PPAMV----------RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  191  smlvggIDADVAIVALIGERGREVSEFVE-KMRHSQRADQLIVVYATSDQSaveranaak  249
            +ML  + DAD  ++ LIGERGREV EF++  + +  R   +IVV ATSD++A+ER  A  
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV-ATSDRPALERVRALF  231

Query  250  vamaaaEFYRDRGMHVVVYLDSLTRYARAERDIALASGEVPVKRGYPLSVFDRLPKLIER  309
            VA + AEF+RD G +VV+  DSLTRYARA R+IALA+GE +V   YP +VF  LP+L+ER
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER  291

Query  310  AGRIHVGSITAFYTVLLESEEEADMVADEFRSLLDGHIYLSRGLAETHHYPSIDVLKSAS  369
            +G  + GSITAFYTVL+E+++  + +ADE RSLLDGHI LSR LAE  HYP+IDVL + S
Sbjct  292  TGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  370  RLFNAVTDEQQQMMAAAFRKQLARYQELQVYIDMGEYQRGTNAENDRIVDGYAQMRQFLI  429
            R+F  VT ++++ +AA +R++LA YQE+++ I +GEYQRG +++ D+ +D Y+++  FL 
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  430  QDQS  433
            Q + 
Sbjct  412  QSKD  415

1479) fliI in NC_006834


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  228 bits (850),  Expect = 6e-61, Method: Compositional matrix adjust.
 Identities = 184/394 (47%), Positives = 266/394 (68%), Gaps = 8/394 (2%)

Query  60   MGATCKVEVDGGWLDAEVVGFAGERTYLMPSAELHGLLPNARVVPSRHrggvevgegllg  119
            MG  C +  +     AEVVG+ G ++ L P +   GL    +V++ R+R  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGTPLDGKGPIRAEGSVGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQRV  179
            RVID+ G PLDG+  +      +  +++  ++ R+PIT +L  G+RAI+++   G GQRV
Sbjct  100  RVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  180  GLFAGSGVGKSTLLGMMTRFTAADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaap  239
            G+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  240  adrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYP  299
            +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  300  PSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVA  359
            P+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+A
Sbjct  279  PGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  360  DSGLYPAIDLESSVSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPAT  419
            + G YPAID+ +++SRV   ++ +  R     L+R L+ Y     LI IG YQRG D  T
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  420  DEALARWPEIVEFLGQ---DVHKASVLSDSLSAL  450
            D A+   P+I  FL Q   +V  + +L + L  +
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1480) XOO_2463 in NC_007705


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  228 bits (850),  Expect = 6e-61, Method: Compositional matrix adjust.
 Identities = 184/394 (47%), Positives = 266/394 (68%), Gaps = 8/394 (2%)

Query  60   MGATCKVEVDGGWLDAEVVGFAGERTYLMPSAELHGLLPNARVVPSRHrggvevgegllg  119
            MG  C +  +     AEVVG+ G ++ L P +   GL    +V++ R+R  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGTPLDGKGPIRAEGSVGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQRV  179
            RVID+ G PLDG+  +      +  +++  ++ R+PIT +L  G+RAI+++   G GQRV
Sbjct  100  RVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  180  GLFAGSGVGKSTLLGMMTRFTAADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaap  239
            G+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  240  adrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYP  299
            +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  300  PSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVA  359
            P+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+A
Sbjct  279  PGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  360  DSGLYPAIDLESSVSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPAT  419
            + G YPAID+ +++SRV   ++ +  R     L+R L+ Y     LI IG YQRG D  T
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  420  DEALARWPEIVEFLGQ---DVHKASVLSDSLSAL  450
            D A+   P+I  FL Q   +V  + +L + L  +
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1481) PXO_00978 in NC_010717


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  228 bits (850),  Expect = 6e-61, Method: Compositional matrix adjust.
 Identities = 184/394 (47%), Positives = 266/394 (68%), Gaps = 8/394 (2%)

Query  60   MGATCKVEVDGGWLDAEVVGFAGERTYLMPSAELHGLLPNARVVPSRHrggvevgegllg  119
            MG  C +  +     AEVVG+ G ++ L P +   GL    +V++ R+R  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGTPLDGKGPIRAEGSVGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQRV  179
            RVID+ G PLDG+  +      +  +++  ++ R+PIT +L  G+RAI+++   G GQRV
Sbjct  100  RVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  180  GLFAGSGVGKSTLLGMMTRFTAADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaap  239
            G+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  240  adrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYP  299
            +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  300  PSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVA  359
            P+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+A
Sbjct  279  PGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  360  DSGLYPAIDLESSVSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPAT  419
            + G YPAID+ +++SRV   ++ +  R     L+R L+ Y     LI IG YQRG D  T
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  420  DEALARWPEIVEFLGQ---DVHKASVLSDSLSAL  450
            D A+   P+I  FL Q   +V  + +L + L  +
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1482) PXO_06188 in NC_010717


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  228 bits (850),  Expect = 6e-61, Method: Compositional matrix adjust.
 Identities = 184/394 (47%), Positives = 266/394 (68%), Gaps = 8/394 (2%)

Query  60   MGATCKVEVDGGWLDAEVVGFAGERTYLMPSAELHGLLPNARVVPSRHrggvevgegllg  119
            MG  C +  +     AEVVG+ G ++ L P +   GL    +V++ R+R  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGTPLDGKGPIRAEGSVGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQRV  179
            RVID+ G PLDG+  +      +  +++  ++ R+PIT +L  G+RAI+++   G GQRV
Sbjct  100  RVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRV  158

Query  180  GLFAGSGVGKSTLLGMMTRFTAADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaap  239
            G+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A 
Sbjct  159  GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT  218

Query  240  adrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYP  299
            +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  YP
Sbjct  219  SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYP  278

Query  300  PSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVA  359
            P+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+A
Sbjct  279  PGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLA  336

Query  360  DSGLYPAIDLESSVSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPAT  419
            + G YPAID+ +++SRV   ++ +  R     L+R L+ Y     LI IG YQRG D  T
Sbjct  337  ERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  420  DEALARWPEIVEFLGQ---DVHKASVLSDSLSAL  450
            D A+   P+I  FL Q   +V  + +L + L  +
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1483) fliI in NC_014171


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  228 bits (848),  Expect = 6e-61, Method: Compositional matrix adjust.
 Identities = 155/372 (42%), Positives = 252/372 (68%), Gaps = 11/372 (2%)

Query  1    MLLPFEQTEKVCYGDSVTLVSEDVVVPRGNHLLGKVLSANGEVLNE-EAENIPLQKIKLD  59
            +L PF  T  +  G+ V  +     VP G+ LLG+V+ + G  L+  E  ++  +     
Sbjct  66   LLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM  125

Query  60   APPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADI  119
            +PP  A  R+ IT+ + TGI++IDS+ T G GQ++GIF+++GVGKSTLL+M+ + + AD 
Sbjct  126  PPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183

Query  120  NVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQ  179
            NV+ L+GERGREV++FI   L+EE  ++ V+VVATSD + L ++RA  +AT+IAE+FRD+
Sbjct  184  NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN  243

Query  180  GNNVLLMMDSVTRFADARRSVDIAVKELPIGGK-TLLMESYMKKLLERSGKTQKGSITGI  238
            G+ V+L+ DS+TR+A A R + +A  E +++G     + S + +LLER+G  +KGSIT++
Sbjct  244  GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF  303

Query  239  YTVLVDGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSPHHW  298
            YTVLV+GDD+N P++D  R++LDGHIVL R LA  +HYPAI VL ++SR+   + S +H+
Sbjct  304  YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHR  363

Query  299  QLANEMRKILSIYKENELYFKLGTIQ---ENEENAYIFECKNKVEGINTFLKQGRSDSFP  355
            QLA  +R+ L++Y+E EL +++G  Q   + + +  I    +   +I TFL+Q++ +   
Sbjct  364  QLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI----DTYPDICTFLRQSKDEVCG  419

Query  356  FDDIVEAIQHIV  367
             + ++E +++I+
Sbjct  420  PELLIEKLHQIL  431

1484) Psesu_1494 in NC_014924


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  228 bits (849),  Expect = 7e-61, Method: Compositional matrix adjust.
 Identities = 183/379 (49%), Positives = 262/379 (70%), Gaps = 8/379 (2%)

Query  69   MGATCKVEVADGGWVEAEVVGFAGDRTSLMPSAELHGLLPNArvvpvrrrggvevgegll  128
            MG  C +  ++     AEVVG+ G ++ L P +   GL    +V+++RRR  V VGE+LL
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  129  grvIDSDGVPLDGKGPVRAEGS-VGMAGVAINPLAREPIIQPLDVGVRAINALLPIGRGQ  187
            GRVID+ G PLDG+    +E    +  +++  ++ R+PI QPL  G+RAI+++   G GQ
Sbjct  99   GRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  188  RVGLFAGSGVGKSTLLGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGlrravvva  247
            RVG+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  248  apadrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRG  307
            A +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  308  YPPSVFAKLPALVERAGNGAAGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRR  367
            YPP+VF+ LP L+ER+G G   +GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR
Sbjct  277  YPPGVFSALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  368  IADAGLYPAIDVESSVSRVVQDIADETWRERIRALKRLVAAYNANRDLIAIGAYQRGNDP  427
            +A+ G YPAIDV +++SRV   ++ +  R+    L+R +A Y+    LI IG YQRG D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  428  VVDEALARWPEIMEFLGQD  446
              D A+   P+I  FL Q 
Sbjct  395  DTDKAIDTYPDICTFLRQS  413

1485) MDS_4744 in NC_015410


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  228 bits (848),  Expect = 8e-61, Method: Compositional matrix adjust.
 Identities = 170/416 (41%), Positives = 263/416 (64%), Gaps = 6/416 (1%)

Query  23   GRLVRVSGMLLESLGCQRSTGQRCRVEQADGSLLDAQVVGFNRDITYLMPFKKPVGLAAG  82
            GR+  VS+ LL++       G+ C +  ++     A+VVG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  83   SRVFPAKDEALLQIDESWLGRVVNGLGEPLDERGKLSGRDPLPVELPSVNPLKRRPVEAA  142
             +V + +    + ++E+ LGRV++G+G PLD R  L+       +  +  ++ R+P+  +
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  143  LDVGVRAINGLLTLGKGQRVGLFAGSGVGKSVLLGMITRQTKADVVVVGLIGERGREVQE  202
            L  G+RAI+++ T G GQRVG+F+++GVGKS LL+M+     AD  V+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  203  FILHSLGEEGLRKAVVVVAPANESPLMRLKATELCHSIAAYFRDQGQDVLLLVDSLTRYA  262
            FI  +L+EE  ++ V+VVA ++ ++L R++A  +  +IA +FRD+G+ V+LL DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  263  MAQREIALALGEPPATKGYPPSVFGMLPELVesagngesgsgslsaIYTVLAEGDDHQDP  322
             A REIALA GE + +  YPP+VF+ LP L+     G +  GS++A+YTVL EGDD ++P
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLL--ERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  323  IVDCARAILDGHIVLSRRLADVGHYPAIDISASVSRCMSQVGEPAHLAAGRQFKEFYSTY  382
            + D  R++LDGHIVLSRRLA+ GHYPAID+ A++SR  + V    H   +  ++   + Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  383  EKIKELIPLGGYTPGMDAKTDRAVQLAPSLERFLRQEVGASAELGASIATLQSIIK  438
            + +  LI +G Y  G+D+ TD+A++  P +  FLRQ  +        I  L+ I+ 
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1486) fliI in NC_009952


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  227 bits (846),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 149/348 (43%), Positives = 234/348 (68%), Gaps = 7/348 (2%)

Query  91   RSEVRPSEDWIGKVIDPFGRCHDG-TIPAPGPTAYPLRGTPPSAITRKPLGHRLETGTAV  149
            R +V  +E  +G+VID FGR  DG  +P      Y   + PP+A+ R+P+ + L TG   
Sbjct  88   RHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYD--AMPPPAMVRQPITQPLMTGIRA  145

Query  150  FNTFLPLVRGQRLGLFAGSGVGKSTLLGKLTRSVQADIAVVALIGERGREVREFVDRTLG  209
            +++      GQR+G+F+++GVGKSTLL+ L  + +AD  V+ LIGERGREVREF+D TL+
Sbjct  146  IDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLS  205

Query  210  ADGMKRAIVVAATSDQAPLLKRRAAWLAMSIAEYFRDLGGHVLFLTDSVTRFAEAHREVA  269
             +  KR ++V ATSD+++L + RA  +A +IAE+FRD G +V++L+DS+TR+A A RE+A
Sbjct  206  EETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIA  265

Query  270  LTAGEAPSMRGFPPSTGQMIMDLAERAGPGPEGKGDITGIFSVLVAGSDMDEPVADILRG  329
            L+AGE++    +PP+    +  L ER+G G   KG IT++++VLV G DM+EP+AD +R+
Sbjct  266  LAAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRS  323

Query  330  VLDGHVVLSREIAERGRFPAVDVLQSVSRSLPDAASAAENELLQLARRTMGIYERSRLMI  389
            +LDGH+VLSR +AERG++PA+DVL ++SR +P  +S  + +L  + RR +++Y+   L+I
Sbjct  324  LLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLI  383

Query  390  QSGLYTQGSDAEIDAAITAHRELEGFLARVETGTAADSF--EHLAQAL  435
            + G Y +G D++ D AI +  ++  FL +      +  +  E L Q L
Sbjct  384  RIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1487) fliI in NC_018286


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  227 bits (846),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 157/366 (43%), Positives = 249/366 (69%), Gaps = 6/366 (1%)

Query  59   GEVMRISGSEVSMLPDTAPDRVAVGDAVL-LHPTPDFAPADSWIGRVIDPFGAPLDGRPM  117
            +EV+ I+GS   + P T+   +  G+ V+ L+   + + +++ +GRVID FG PLDGR +
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  118  MRGEAT-RDLMAAPPKAASRRPMGERLATGLAVFNTILPIVKGQRVGLFAGSGVGKSTLL  176
               E   +D  A PP A  R+P+ + L TG+  ++++     GQRVG+F+++GVGKSTLL
Sbjct  115  --PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  177  ATLAQNMEADVVVIALIGERGREVNHFVKDVLGDEGMQRAVVVAATSDQSALVRRRCAWS  236
            A L +  +AD  V+ LIGERGREV +F+   L++E  +R V+V ATSD++AL R R    
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  237  AMAVAEHFRDQGKNVLFLADSVTRFAEAHREIAVSSGEAPALRGYPPSVTPLITGLCERA  296
            A ++AE FRD+GK V++LADS+TR+A A REIA+++GE++    YPP+V + +  L ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  297  GPGSGDQGDITAIFSVLVAGSDMDEPIADILRGVLDGHIVLNREIAERGRFPAVDVSRSV  356
              G G++G ITA+++VLV G DM+EP+AD +R++LDGHIVL+R +AERG++PA+DV  ++
Sbjct  293  --GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  357  SRSLPAAATADENSAILDVRKYLGAYEQSEVMIRAGLYSEGNDVTLDQAVKLWPELDSFF  416
            SR +P  ++ ++      +R+ L+ Y++ E++IR G Y  G D   D+A+   P++ +F+
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  417  GRSDPE  422
             +S  E
Sbjct  411  RQSKDE  416

1488) fliI in NC_018290


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  227 bits (846),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 157/366 (43%), Positives = 249/366 (69%), Gaps = 6/366 (1%)

Query  59   GEVMRISGSEVSMLPDTAPDRVAVGDAVL-LHPTPDFAPADSWIGRVIDPFGAPLDGRPM  117
            +EV+ I+GS   + P T+   +  G+ V+ L+   + + +++ +GRVID FG PLDGR +
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  118  MRGEAT-RDLMAAPPKAASRRPMGERLATGLAVFNTILPIVKGQRVGLFAGSGVGKSTLL  176
               E   +D  A PP A  R+P+ + L TG+  ++++     GQRVG+F+++GVGKSTLL
Sbjct  115  --PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  177  ATLAQNMEADVVVIALIGERGREVNHFVKDVLGDEGMQRAVVVAATSDQSALVRRRCAWS  236
            A L +  +AD  V+ LIGERGREV +F+   L++E  +R V+V ATSD++AL R R    
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  237  AMAVAEHFRDQGKNVLFLADSVTRFAEAHREIAVSSGEAPALRGYPPSVTPLITGLCERA  296
            A ++AE FRD+GK V++LADS+TR+A A REIA+++GE++    YPP+V + +  L ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  297  GPGSGDQGDITAIFSVLVAGSDMDEPIADILRGVLDGHIVLNREIAERGRFPAVDVSRSV  356
              G G++G ITA+++VLV G DM+EP+AD +R++LDGHIVL+R +AERG++PA+DV  ++
Sbjct  293  --GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  357  SRSLPAAATADENSAILDVRKYLGAYEQSEVMIRAGLYSEGNDVTLDQAVKLWPELDSFF  416
            SR +P  ++ ++      +R+ L+ Y++ E++IR G Y  G D   D+A+   P++ +F+
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  417  GRSDPE  422
             +S  E
Sbjct  411  RQSKDE  416

1489) Anae109_2216 in NC_009675


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  226 bits (844),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 167/313 (54%), Positives = 228/313 (73%), Gaps = 1/313 (0%)

Query  122  W-AVDRPAPGPLARRRITAPLALGVRAIDGLLTVGEGQRIGIFAGAGVGKSTLLGQIARH  180
            W   D  +P ++ R+ IT PL  G+RAID++ T GEGQR+GIF+++GVGKSTLL+ +   
Sbjct  119  WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNA  178

Query  181  TRAELSVICLvgergrevrefveeALGPEGLARSVVVAATSDAPALERLKAAHVATGIAE  240
              A+ +V+ L+GERGREVREF++ +L+ E   R V+V ATSD PALER++A  VAT IAE
Sbjct  179  PDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE  238

Query  241  WFAERDRRVLFMLDSLTRYARAQREVGLAAGEPPARHGYPPSVFAALPRLLERTGNRARG  300
             F + ++RV+++ DSLTRYARA RE++LAAGE +    YPP+VF+ALPRLLERTG   +G
Sbjct  239  FFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKG  298

Query  301  GITALYTVLVAGGDLDEPIADEVRGILDGHVVLDPRVAAAGRYPAIDVLRSLSRVMPAVT  360
            +ITA+YTVLV G+D++EP+ADEVR++LDGH+VL  R+A  G+YPAIDVL +LSRV P VT
Sbjct  299  SITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVT  358

Query  361  TDShraaadrlrallaaherhrdlIAVGAYARGSDPDADEALARLPAIEAFLRQRADEAE  420
            ++ HR  A  LR  LA  +    LI +G Y RG D D+D A+   P I +FLRQ  DE  
Sbjct  359  SHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

Query  421  APERTRARLEELV  433
            +PE    +L++++
Sbjct  419  GPELLIEKLHQIL  431

1490) Pmen_4414 in NC_009439


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  226 bits (841),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 170/406 (42%), Positives = 261/406 (65%), Gaps = 8/406 (1%)

Query  23   GRLVRVSGMLLESLGCQRSTGQRCRVEQADGSLLDAQVVGFNRDITYLMPFKKPVGLAAG  82
            GR+  VS+ LL++       G+ C +  ++     A+VVG+N   + L PF    GL  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTAGLHCG  79

Query  83   SRVFPAKDEALLQIDESWLGRVVNGLGEPLDERGKLSGRDPLPVELPTVNPLKRRPVEAA  142
             +V + +    + ++E+ LGRV++G+G PLD R  L+       +     ++ R+P+  +
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  143  LDVGVRAINALLTLGKGQRVGLFAGSGVGKSVLLGMITRQTKADVVVVGLIGERGREVQE  202
            L  G+RAI+++ T G GQRVG+F+++GVGKS LL+M+     AD  V+ LIGERGREV+E
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  203  FLLHSLGEEGLRKAVVVVAPANESPLMRLKATELCHSIAAYFRDQGQDVLLLVDSLTRYA  262
            F+  +L+EE  ++ V+VVA ++ ++L R++A  +  +IA +FRD+G+ V+LL DSLTRYA
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  263  MAQREIALALGEPPATKGYPPSVFGMLPELVesagngesgsgslsaIYTVLAEGDDHQDP  322
             A REIALA GE + +  YPP+VF+ LP L+     G +  GS++A+YTVL EGDD ++P
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLL--ERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  323  IVDCARAILDGHIVLSRRLADVGHYPAIDISASVSRCMSQVGEPAHLGAARQFKEFYSTY  382
            + D  R++LDGHIVLSRRLA+ GHYPAID+ A++SR  + V    H   A  ++   + Y
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  383  EKIKELIPLGGYTPGMDAKTDRAVQLAPSLERFLRQ--EVGSGAEL  426
            + +  LI +G Y  G+D+ TD+A++  P +  FLRQ  +   G+EL
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPEL  422

1491) fliI in NC_011757


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  225 bits (840),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 173/391 (45%), Positives = 261/391 (67%), Gaps = 23/391 (5%)

Query  61   QVGEVVRIDAAGATVKPFES----RIEAGIGSLAHR----IGPAQLRPDPRWKGRVIDAL  112
            +++EVV I+++ A + PF S    +    + +L +R    +G A L       GRVID++
Sbjct  53   ELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL-------GRVIDGF  105

Query  113  GRPVDGLGPLAEGPASVPLDADPPAAMTRARVKTPLPTGVRAIDLFTPLCA-GQRIGIFA  171
            GRP+DG   L+E       DA PP+AM R  +  PL TG+RAID  +  C+ GQR+GIF+
Sbjct  106  GRPLDG-RELPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEGQRVGIFS  162

Query  172  GSGVGKSTLLAMLAGAQGFDSVVVALVGERGREVREFLEGPiaaardravivvSTGDESP  231
            ++GVGKSTLLAML  A + DS V+ L+GERGREVREF++  ++    +  ++V +  + P
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  232  MMRR-QAPKVALAVAESFRDRGESVLLIVDSVTRYAHAARDVALAAGEPAVARGYPPSVF  290
             + R +A  VA ++AE FRD G  V+L+ DS+TRYA+AAR++ALAAGE AV+  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  291  SDLPRLLERAGPGAEGTGTITGIFSVLVDGDDHNDPVADSIRGTLDGHVVLDRAIAEQGR  350
            S LPRLLER+G G    G+IT++++VLV+GDD N+P+AD +R+ LDGH+VL R +AE+G+
Sbjct  283  SALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  351  YPAIELLGSISRLAGEVWTGDQRELVRKLKSMMARFEETRDLRLMGGYRAGSDPDLDQAV  410
            YPAI++L+++SR+   V + ++R+L   L+  +A ++E   L  +G Y+ G D D D+A+
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  411  SLVPRIYEALRQEPGQPPSRDAFLE-LAQSL  440
               P I   LRQ  ++  + + ++E L Q L
Sbjct  401  DTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1492) fliI in NC_012808


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  225 bits (840),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 173/391 (45%), Positives = 261/391 (67%), Gaps = 23/391 (5%)

Query  61   QVGEVVRIDAAGATVKPFES----RIEAGIGSLAHR----IGPAQLRPDPRWKGRVIDAL  112
            +++EVV I+++ A + PF S    +    + +L +R    +G A L       GRVID++
Sbjct  53   ELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL-------GRVIDGF  105

Query  113  GRPIDGLGPLAEGPASVPLDADPPAAMTRARVKTPLPTGVRAIDLFTPLCA-GQRIGIFA  171
            GRP+DG   L+E       DA PP+AM R  +  PL TG+RAID  +  C+ GQR+GIF+
Sbjct  106  GRPLDG-RELPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEGQRVGIFS  162

Query  172  GSGVGKSTLLAMLAGAQGFDSVVVALVGERGREVREFLEGPiaaardravivvSTGDESP  231
            ++GVGKSTLLAML  A + DS V+ L+GERGREVREF++  ++    +  ++V +  + P
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  232  MMRR-QAPKVALAVAESFRDRGESVLLIVDSVTRYAHAARDVALAAGEPAVARGYPPSVF  290
             + R +A  VA ++AE FRD G  V+L+ DS+TRYA+AAR++ALAAGE AV+  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  291  SDLPRLLERAGPGAEGTGTITGIFSVLVDGDDHNDPVADSIRGTLDGHVVLDRAIAEQGR  350
            S LPRLLER+G G    G+IT++++VLV+GDD N+P+AD +R+ LDGH+VL R +AE+G+
Sbjct  283  SALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  351  YPAIELLGSISRLAGEVWTGDQRELVRKLKSMMARFEETRDLRLMGGYRAGSDPDLDQAV  410
            YPAI++L+++SR+   V + ++R+L   L+  +A ++E   L  +G Y+ G D D D+A+
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  411  SLVPRIYEALRQEPGQPPSRDAFLE-LAQSL  440
               P I   LRQ  ++  + + ++E L Q L
Sbjct  401  DTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1493) fliI in NC_010172


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  225 bits (840),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 173/391 (45%), Positives = 261/391 (67%), Gaps = 23/391 (5%)

Query  61   QVGEVVRIDAAGATVKPFES----RIEAGIGSLAHR----IGPAQLRPDPRWKGRVIDAL  112
            +++EVV I+++ A + PF S    +    + +L +R    +G A L       GRVID++
Sbjct  53   ELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL-------GRVIDGF  105

Query  113  GRPVDGLGPLAEGPASVPLDADPPAAMTRARVKTPLPTGVRAIDLFTPLCA-GQRIGIFA  171
            GRP+DG   L+E       DA PP+AM R  +  PL TG+RAID  +  C+ GQR+GIF+
Sbjct  106  GRPLDG-RELPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEGQRVGIFS  162

Query  172  GSGVGKSTLLAMLAGAQGFDSVVVALVGERGREVREFLEGPiaaardravivvSTGDESP  231
            ++GVGKSTLLAML  A + DS V+ L+GERGREVREF++  ++    +  ++V +  + P
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  232  MMRR-QAPKVALAVAESFRDRGESVLLIVDSVTRYAHAARDVALAAGEPAVARGYPPSVF  290
             + R +A  VA ++AE FRD G  V+L+ DS+TRYA+AAR++ALAAGE AV+  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  291  SDLPRLLERAGPGAEGTGTITGIFSVLVDGDDHNDPVADSIRGTLDGHVVLDRAIAEQGR  350
            S LPRLLER+G G    G+IT++++VLV+GDD N+P+AD +R+ LDGH+VL R +AE+G+
Sbjct  283  SALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  351  YPAIELLGSISRLAGEVWTGDQRELVRKLKSMMARFEETRDLRLMGGYRAGSDPDLDQAV  410
            YPAI++L+++SR+   V + ++R+L   L+  +A ++E   L  +G Y+ G D D D+A+
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  411  SLVPRIYEALRQEPGQPPSRDAFLE-LAQSL  440
               P I   LRQ  ++  + + ++E L Q L
Sbjct  401  DTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1494) bsaS in NC_017832


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  225 bits (840),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 180/413 (44%), Positives = 280/413 (68%), Gaps = 11/413 (2%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            + + +++A LP V +GELC I+++         A+VVG+    A+LS + STAGL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGapppagaapgrraidaappdyaarrpiE  139
            +++   R  + V+ ALLG V+D+ G  ++         +   ++  DA PP    R+PI 
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGRPLDG-----RELPEVCWKDYDAMPPPAMVRQPIT  136

Query  140  RRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGREV  199
            + L TG+RAID++ +CG GQR GIF+A+G GK++L+ M+ + + AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  SEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMTr  259
             EF++      +R R V+V ATSDR++++R  A +VATTIAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  yaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPDP  319
            YARA R++ALA+GE++    YP++VF  LPRLLER G    GSITAFYTVL+E ++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  320  IGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLARI  379
            ++DE+RS++DGH+ LSR+L+ +GH+PAIDVL + SR+F  ++   HR LA  +R++LA  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  380  DEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTLERLSE  432
            +E+++++ +GEY+RG + + D A+D  P + +FL+Q+ DE  +    +E+L +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

1495) bsaS in NC_007435


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  225 bits (840),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 180/413 (44%), Positives = 280/413 (68%), Gaps = 11/413 (2%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            + + +++A LP V +GELC I+++         A+VVG+    A+LS + STAGL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGapppagaapgrraidaappdyaarrpiE  139
            +++   R  + V+ ALLG V+D+ G  ++         +   ++  DA PP    R+PI 
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGRPLDG-----RELPEVCWKDYDAMPPPAMVRQPIT  136

Query  140  RRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGREV  199
            + L TG+RAID++ +CG GQR GIF+A+G GK++L+ M+ + + AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  SEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMTr  259
             EF++      +R R V+V ATSDR++++R  A +VATTIAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  yaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPDP  319
            YARA R++ALA+GE++    YP++VF  LPRLLER G    GSITAFYTVL+E ++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  320  IGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLARI  379
            ++DE+RS++DGH+ LSR+L+ +GH+PAIDVL + SR+F  ++   HR LA  +R++LA  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  380  DEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTLERLSE  432
            +E+++++ +GEY+RG + + D A+D  P + +FL+Q+ DE  +    +E+L +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

1496) BURPS668_A2171 in NC_009075


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  225 bits (840),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 180/413 (44%), Positives = 280/413 (68%), Gaps = 11/413 (2%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            + + +++A LP V +GELC I+++         A+VVG+    A+LS + STAGL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGapppagaapgrraidaappdyaarrpiE  139
            +++   R  + V+ ALLG V+D+ G  ++         +   ++  DA PP    R+PI 
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGRPLDG-----RELPEVCWKDYDAMPPPAMVRQPIT  136

Query  140  RRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGREV  199
            + L TG+RAID++ +CG GQR GIF+A+G GK++L+ M+ + + AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  SEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMTr  259
             EF++      +R R V+V ATSDR++++R  A +VATTIAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  yaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPDP  319
            YARA R++ALA+GE++    YP++VF  LPRLLER G    GSITAFYTVL+E ++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  320  IGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLARI  379
            ++DE+RS++DGH+ LSR+L+ +GH+PAIDVL + SR+F  ++   HR LA  +R++LA  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  380  DEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTLERLSE  432
            +E+++++ +GEY+RG + + D A+D  P + +FL+Q+ DE  +    +E+L +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

1497) bsaS in NC_006351


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  225 bits (840),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 180/413 (44%), Positives = 280/413 (68%), Gaps = 11/413 (2%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            + + +++A LP V +GELC I+++         A+VVG+    A+LS + STAGL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGapppagaapgrraidaappdyaarrpiE  139
            +++   R  + V+ ALLG V+D+ G  ++         +   ++  DA PP    R+PI 
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGRPLDG-----RELPEVCWKDYDAMPPPAMVRQPIT  136

Query  140  RRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGREV  199
            + L TG+RAID++ +CG GQR GIF+A+G GK++L+ M+ + + AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  SEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMTr  259
             EF++      +R R V+V ATSDR++++R  A +VATTIAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  yaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPDP  319
            YARA R++ALA+GE++    YP++VF  LPRLLER G    GSITAFYTVL+E ++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  320  IGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLARI  379
            ++DE+RS++DGH+ LSR+L+ +GH+PAIDVL + SR+F  ++   HR LA  +R++LA  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  380  DEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTLERLSE  432
            +E+++++ +GEY+RG + + D A+D  P + +FL+Q+ DE  +    +E+L +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

1498) BDL_4850 in NC_021877


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  225 bits (840),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 180/413 (44%), Positives = 280/413 (68%), Gaps = 11/413 (2%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            + + +++A LP V +GELC I+++         A+VVG+    A+LS + STAGL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGapppagaapgrraidaappdyaarrpiE  139
            +++   R  + V+ ALLG V+D+ G  ++         +   ++  DA PP    R+PI 
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGRPLDG-----RELPEVCWKDYDAMPPPAMVRQPIT  136

Query  140  RRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGREV  199
            + L TG+RAID++ +CG GQR GIF+A+G GK++L+ M+ + + AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  SEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMTr  259
             EF++      +R R V+V ATSDR++++R  A +VATTIAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  yaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPDP  319
            YARA R++ALA+GE++    YP++VF  LPRLLER G    GSITAFYTVL+E ++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  320  IGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLARI  379
            ++DE+RS++DGH+ LSR+L+ +GH+PAIDVL + SR+F  ++   HR LA  +R++LA  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  380  DEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTLERLSE  432
            +E+++++ +GEY+RG + + D A+D  P + +FL+Q+ DE  +    +E+L +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

1499) fliI in NC_012988


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  225 bits (839),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 173/391 (45%), Positives = 261/391 (67%), Gaps = 23/391 (5%)

Query  61   QVGEVVRIDAAGATVKPFES----RIEAGIGSLAHR----IGPAQLRPDPRWKGRVIDAL  112
            +++EVV I+++ A + PF S    +    + +L +R    +G A L       GRVID++
Sbjct  53   ELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL-------GRVIDGF  105

Query  113  GRPVDGLGPLAEGPASVPLDADPPAAMTRARVKTPLPTGVRAIDLFTPLCA-GQRIGIFA  171
            GRP+DG   L+E       DA PP+AM R  +  PL TG+RAID  +  C+ GQR+GIF+
Sbjct  106  GRPLDG-RELPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEGQRVGIFS  162

Query  172  GSGVGKSTLLAMLAGAQGFDSVVVALVGERGREVREFLEGPiaaardravivvSTGDESP  231
            ++GVGKSTLLAML  A + DS V+ L+GERGREVREF++  ++    +  ++V +  + P
Sbjct  163  APGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRP  222

Query  232  MMRR-QAPKVALAVAESFRDRGESVLLIVDSVTRYAHAARDVALAAGEPAVARGYPPSVF  290
             + R +A  VA ++AE FRD G  V+L+ DS+TRYA+AAR++ALAAGE AV+  YPP+VF
Sbjct  223  ALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF  282

Query  291  SDLPRLLERAGPGAEGTGTITGIFSVLVDGDDHNDPVADSIRGTLDGHVVLDRAIAEQGR  350
            S LPRLLER+G G    G+IT++++VLV+GDD N+P+AD +R+ LDGH+VL R +AE+G+
Sbjct  283  SALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGH  340

Query  351  YPAIELLGSISRLAGEVWTGDQRELVRKLKSMMARFEETRDLRLMGGYRAGSDPDLDQAV  410
            YPAI++L+++SR+   V + ++R+L   L+  +A ++E   L  +G Y+ G D D D+A+
Sbjct  341  YPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

Query  411  SLVPRIYEALRQEPGQPPSRDAFLE-LAQSL  440
               P I   LRQ  ++  + + ++E L Q L
Sbjct  401  DTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1500) bsaS in NC_006349


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  225 bits (838),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 180/414 (44%), Positives = 280/414 (68%), Gaps = 12/414 (2%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            + + +++A LP V +GELC I+++         A+VVG+    A+LS + STAGL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGappppagaapgrraidaappdyaarrpi  139
            +++   R  + V+ ALLG V+D+ G  ++          +   ++  DA PP    R+PI
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGRPLDG------RELPEVCWKDYDAMPPPAMVRQPI  135

Query  140  ERRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGRE  199
             + L TG+RAID++ +CG GQR GIF+A+G GK++L+ M+ + + AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  200  VSEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMT  259
            V EF++      +R R V+V ATSDR++++R  A +VATTIAE+FRD G  V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  260  ryaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPD  319
            RYARA R++ALA+GE++    YP++VF  LPRLLER G    GSITAFYTVL+E ++  +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  320  PIGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLAR  379
            P++DE+RS++DGH+ LSR+L+ +GH+PAIDVL + SR+F  ++   HR LA  +R++LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  IDEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTLERLSE  433
             +E+++++ +GEY+RG + + D A+D  P + +FL+Q+ DE  +    +E+L +
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

1501) bsaS in NC_008835


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  225 bits (838),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 180/414 (44%), Positives = 280/414 (68%), Gaps = 12/414 (2%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            + + +++A LP V +GELC I+++         A+VVG+    A+LS + STAGL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGappppagaapgrraidaappdyaarrpi  139
            +++   R  + V+ ALLG V+D+ G  ++          +   ++  DA PP    R+PI
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGRPLDG------RELPEVCWKDYDAMPPPAMVRQPI  135

Query  140  ERRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGRE  199
             + L TG+RAID++ +CG GQR GIF+A+G GK++L+ M+ + + AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  200  VSEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMT  259
            V EF++      +R R V+V ATSDR++++R  A +VATTIAE+FRD G  V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  260  ryaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPD  319
            RYARA R++ALA+GE++    YP++VF  LPRLLER G    GSITAFYTVL+E ++  +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  320  PIGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLAR  379
            P++DE+RS++DGH+ LSR+L+ +GH+PAIDVL + SR+F  ++   HR LA  +R++LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  IDEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTLERLSE  433
             +E+++++ +GEY+RG + + D A+D  P + +FL+Q+ DE  +    +E+L +
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

1502) bsaS in NC_009079


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  225 bits (838),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 180/414 (44%), Positives = 280/414 (68%), Gaps = 12/414 (2%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            + + +++A LP V +GELC I+++         A+VVG+    A+LS + STAGL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGappppagaapgrraidaappdyaarrpi  139
            +++   R  + V+ ALLG V+D+ G  ++          +   ++  DA PP    R+PI
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGRPLDG------RELPEVCWKDYDAMPPPAMVRQPI  135

Query  140  ERRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGRE  199
             + L TG+RAID++ +CG GQR GIF+A+G GK++L+ M+ + + AD  V+ LIGERGRE
Sbjct  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE  195

Query  200  VSEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMT  259
            V EF++      +R R V+V ATSDR++++R  A +VATTIAE+FRD G  V+L+ DS+T
Sbjct  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255

Query  260  ryaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPD  319
            RYARA R++ALA+GE++    YP++VF  LPRLLER G    GSITAFYTVL+E ++  +
Sbjct  256  RYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315

Query  320  PIGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLAR  379
            P++DE+RS++DGH+ LSR+L+ +GH+PAIDVL + SR+F  ++   HR LA  +R++LA 
Sbjct  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLAL  375

Query  380  IDEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTLERLSE  433
             +E+++++ +GEY+RG + + D A+D  P + +FL+Q+ DE  +    +E+L +
Sbjct  376  YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

1503) BURPS1106A_A2083 in NC_009078


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  225 bits (838),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 180/413 (44%), Positives = 280/413 (68%), Gaps = 11/413 (2%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            + + +++A LP V +GELC I+++         A+VVG+    A+LS + STAGL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGapppagaapgrraidaappdyaarrpiE  139
            +++   R  + V+ ALLG V+D+ G  ++         +   ++  DA PP    R+PI 
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGRPLDG-----RELPEVCWKDYDAMPPPAMVRQPIT  136

Query  140  RRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGREV  199
            + L TG+RAID++ +CG GQR GIF+A+G GK++L+ M+ + + AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  SEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMTr  259
             EF++      +R R V+V ATSDR++++R  A +VATTIAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  yaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRVGSITAFYTVLLENEEEPDP  319
            YARA R++ALA+GE++    YP++VF  LPRLLER G    GSITAFYTVL+E ++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  320  IGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLARI  379
            ++DE+RS++DGH+ LSR+L+ +GH+PAIDVL + SR+F  ++   HR LA  +R++LA  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  380  DEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTLERLSE  432
            +E+++++ +GEY+RG + + D A+D  P + +FL+Q+ DE  +    +E+L +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

1504) BPC006_II2065 in NC_018529


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  225 bits (838),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 180/413 (44%), Positives = 280/413 (68%), Gaps = 11/413 (2%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            + + +++A LP V +GELC I+++         A+VVG+    A+LS + STAGL     
Sbjct  28   VSATLLNAWLPGVFMGELCCIKPGEEL------AEVVGINGSKALLSPFTSTAGLHCGQQ  81

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGapppagaapgrraidaappdyaarrpiE  139
            +++   R  + V+ ALLG V+D+ G  ++         +   ++  DA PP    R+PI 
Sbjct  82   VMALRRRHQVPVGEALLGRVIDGFGRPLDG-----RELPEVCWKDYDAMPPPAMVRQPIT  136

Query  140  RRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGREV  199
            + L TG+RAID++ +CG GQR GIF+A+G GK++L+ M+ + + AD  V+ LIGERGREV
Sbjct  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196

Query  200  SEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMTr  259
             EF++      +R R V+V ATSDR++++R  A +VATTIAE+FRD G  V+L+ DS+TR
Sbjct  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256

Query  260  yaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRVGSITAFYTVLLENEEEPDP  319
            YARA R++ALA+GE++    YP++VF  LPRLLER G    GSITAFYTVL+E ++  +P
Sbjct  257  YARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316

Query  320  IGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLARI  379
            ++DE+RS++DGH+ LSR+L+ +GH+PAIDVL + SR+F  ++   HR LA  +R++LA  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  380  DEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTLERLSE  432
            +E+++++ +GEY+RG + + D A+D  P + +FL+Q+ DE  +    +E+L +
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQ  429

1505) Jann_4199 in NC_007802


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  224 bits (834),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 153/367 (42%), Positives = 249/367 (68%), Gaps = 12/367 (3%)

Query  51   ADATGEILAMEAGRARVMPDGPADGLRLGADVTHLGP-ASISPDDSWLGRVIDPDGQPLD  109
            ++  +E++++++++A + P  ++ GL+ G +V  L     ++ +++ LGRVID  G+PLD
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  110  GRAILPGPV--AYPLVSPPPSPAARRGLGARLQTGFAVFDTLLPIVRGQRVGLFAGSGVG  167
            GR  LP      Y   + PP++  R+ +   L TG+  +D++     GQRVG+F+++GVG
Sbjct  111  GRE-LPEVCWKDYD--AMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  168  KSRLTAALADGMAADVVVIGLIGERGREVRDFVSETLGPEGLARSVVIAATSDRPALTRA  227
            KS L A L ++  AD  V+ LIGERGREVR+F+  TL+ E   R V++ ATSDRPAL R 
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  228  RAAYTMMAVAEFFRNQGRNVIVLADSITRFAEAQRDVAAAAGEPFGPSGFPASMAQTIMA  287
            RA +   ++AEFFR++G+ V++LADS+TR+A A R++A AAGE   ++ +P+++  ++  
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  288  LAERAGPGSGTQGDITAIFSVLVAGSDMDGPVADVMRGTLDGHIVLTREIAERGRYPAID  347
            L ER+  G G +G ITA+++VLV G DM+ P+AD +R+ LDGHIVL+R +AERG+YPAID
Sbjct  288  LLERT--GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  348  LLRSVSRSLPNAASDEENRM--ILRARQLMGAYDRAEMMLQAGLYTPGADPLTDGAVKVW  405
            +L ++SR +P  +S+E+ ++  ILR R  ++ Y+  E++++ G Y  G D  TD A+   
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRR--LALYQEVELLIRIGEYQRGVDTDTDKAIDTY  403

Query  406  ADLDAFV  412
            +D+ +F+
Sbjct  404  PDICTFL  410

1506) fliI in NC_011894


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  224 bits (836),  Expect = 7e-60, Method: Compositional matrix adjust.
 Identities = 167/367 (46%), Positives = 246/367 (68%), Gaps = 8/367 (2%)

Query  71   EIIGFSGAHALAMPFGSLQGVRRGCPARVRA-ENAGAIRPSRAWLGRVIDAlgrpidglg  129
            E++G++G+ AL  PF S  G++  C  +V A      +  + A LGRVID++GRP+DG  
Sbjct  56   EVVGINGSKALLSPFTSTAGLH--CGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE  113

Query  130  plppgpvayplQTDPPPAHARRRVGPPLDLGVRCINTFLTLC-RGQRMGIFAGSGVGKSV  188
                    Y  ++ PPPA  R+ +  PL  G+R I++ ++ C  GQR+GIF+++GVGKS 
Sbjct  114  LPEVCWKDY--DAMPPPAMVRQPITQPLMTGIRAIDS-VATCGEGQRVGIFSAPGVGKST  170

Query  189  LLSMLARSAASDVAVIGLVGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRNAA  248
            LL+ML  ++ +D  V+ L+GERGREV+EF++  L+ E   R V+VVATSD PAL R  A 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  249  YATLALAEHFRDEGAQVLCMIDSITRFAMAQRDVGLAAGEPPTAKGYTPTVFSELPRLLE  308
            + + ++AE FRD+G +V+ + DS+TR+A A R+++LAAGE + +  Y P VFS LPRLLE
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  309  RAGPGTGEGMISGLFTVLVEGDDHNEPVADAVRGILDGHIVMERRIAERGRYPAINVLRS  368
            R+G G   G I++++TVLVEGDD NEP+AD VR++LDGHIV+ RR+AERG+YPAI+VL +
Sbjct  291  RTGMG-EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  369  VSRTMPRACDPAFLPVVQRARHLMSTHADMEELIRLGAYRAGSSPEVDEAVALMPDLEAF  428
            +SR  P         +    R+ ++   ++E LIR+G Y+ G   + D A+   PD+ +F
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  429  LGQSKEE  435
            L QSK+E
Sbjct  410  LRQSKDE  416

1507) fliI in NC_016812


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  224 bits (836),  Expect = 7e-60, Method: Compositional matrix adjust.
 Identities = 144/332 (44%), Positives = 225/332 (68%), Gaps = 7/332 (2%)

Query  115  GRTINALAEPIDGRGPLMQGDMRRSISNTAPPSMTRRRVEQGFKTGVRAVDIFSPLC-LG  173
            GR I++++ P+DGR   +    ++     +PP+M R+ + Q + TG+RA+D  +  C  G
Sbjct  99   GRVIDGFGRPLDGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEG  155

Query  174  QRLGIFAGSGVGKSTLLSMLARADAFDKVVIALVGERGREVREFIEDTLGDNLAKSVAVV  233
            QR+GIF+++GVGKSTLL+ML  A   D  V+ L+GERGREVREFI+ TL+++  K   +V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  234  ATSDESPMLRKMAPL-TAVTIAEHYRDKGDNVLLIIDSVTRFAHAIREVATAAGEPPIAR  292
             ++ + P L ++ +L  A TIAE +RD+G  V+L+ DS+TR+A+A RE+A AAGE +++ 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  293  GYPASVFTELPRLLERAGPGAEGTGTITAIISILVDGDNHNDPVADSARGILDGHIVLDR  352
             YP++VF+ LPRLLER+G G    G+ITA+ ++LV+GD+ N+P+AD  R++LDGHIVL R
Sbjct  276  EYPPGVFSALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  353  SLAEEGRYPPIDPLASISRLARKAWTPDQEKLVARLKSLIHRFEETRDLRLIGGYRAGGD  412
             LAE G+YP+ID LA++SR+     + ++ +L A L+  +  ++E   L  IG Y+ G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  413  PDLDMAIKQVPVIYDVLKQTPGERSAADAFTD  444
             D D AI   P I   L+Q+ +E  +++ + +
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDEVCGPELLIE  425

1508) fliI in NC_018000


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  224 bits (836),  Expect = 7e-60, Method: Compositional matrix adjust.
 Identities = 144/332 (44%), Positives = 224/332 (68%), Gaps = 7/332 (2%)

Query  115  GRTINALADPIDGRGPLMQGDIRRPISNTAPPSMTRRRVEQGFKTGVRAVDIFSPLC-LG  173
            GR I++++ P+DGR   +    ++     +PP+M R+ + Q + TG+RA+D  +  C  G
Sbjct  99   GRVIDGFGRPLDGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEG  155

Query  174  QRLGIFAGSGVGKSTLLSMLARADAFDKVVIALVGERGREVREFIEDTLGDNLAKSVAVV  233
            QR+GIF+++GVGKSTLL+ML  A   D  V+ L+GERGREVREFI+ TL+++  K   +V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  234  ATSDESPMLRKMAPL-TAVTIAEHYRDKGDNVLLIVDSVTRFAHAIREVATAAGEPPIAR  292
             ++ + P L ++ +L  A TIAE +RD+G  V+L+ DS+TR+A+A RE+A AAGE +++ 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  293  GYPASVFTELPRLLERAGPGAEGTGTITAIISILVDGDNHNDPVADSARGILDGHIVLDR  352
             YP++VF+ LPRLLER+G G    G+ITA+ ++LV+GD+ N+P+AD  R++LDGHIVL R
Sbjct  276  EYPPGVFSALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  353  SLAEEGRYPPIDPLASISRLARKAWTPDQEKLVARLKSLIHRFEETRDLRLIGGYRAGGD  412
             LAE G+YP+ID LA++SR+     + ++ +L A L+  +  ++E   L  IG Y+ G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  413  PDLDMAIKQVPVIYDVLKQTPGERSATDAFTD  444
             D D AI   P I   L+Q+ +E  + + + +
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDEVCGPELLIE  425

1509) Swit_1290 in NC_009511


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  224 bits (835),  Expect = 8e-60, Method: Compositional matrix adjust.
 Identities = 163/371 (44%), Positives = 253/371 (69%), Gaps = 9/371 (2%)

Query  48   AALAEVVGFRGNRTLLMALDADAPHSAGARVEPDRRGGSVDVGETLLGRVMDALGNPIDG  107
              LAEVVG+ G+++LL ++ + A    G +V + RR   V VGE+LLGRV+D++G P+DG
Sbjct  52   EELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG  111

Query  108  --LGPIATAERWP-LAGRRGNPLDRARVTEPFDMGVRAINALLTAGVGQRIAIAAGSGVG  164
              L  +     W    +    ++ R  +T+P+  G+RAI+++ T G GQR++I +++GVG
Sbjct  112  RELPEVC----WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  165  KSVLMGQMIAGADADIIVVGLVGERSREVSDFLATKLAGPVRQKSvvvavpadhppvLRL  224
            KS L++ +  ++DAD  V+ L+GER+REV +F+   L+   R++ V+V   +D+P++ R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  225  RAAMRATAIAEYFRAQGKRVLLLIDSLTRVAHAQREIGLSLGEPPTMKGYPPSALGLIPR  284
            RA   AT+IAE+FR +GKRV+LL DSLTR A+A REI+L+ GE +    YPP+ ++ +PR
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  285  LIERAGVDAHSGGSITALYTVLAdgddtddpivdTARAIVDGHIILSRSLAEQGVFPAID  344
            L+ER+G++    GSITA+YTVL +GDD ++P+ D  R+++DGHI+LSR LAE+G +PAID
Sbjct  288  LLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  345  VGKSLSRVMSDIVTPEHQQAAQILRRLWAVYEENRDLILMGAYRAGSDPIVDVAIARHDH  404
            V  +LSRV + + + EH+Q A ILRR  A+Y+E   LI +G Y+ G D   D AI    +
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  405  ILEFISQGQKD  415
            I  F+ Q++ +
Sbjct  406  ICTFLRQSKDE  416

1510) fliI in NC_012587


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  222 bits (828),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 144/328 (44%), Positives = 222/328 (68%), Gaps = 7/328 (2%)

Query  115  GRTINALAEPIDGRGPLMQGDMRRSISNTAPPSMTRRRVEQGFKTGVRAVDIFSPLC-LG  173
            GR I++++ P+DGR   +    ++     +PP+M R+ + Q + TG+RA+D  +  C  G
Sbjct  99   GRVIDGFGRPLDGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEG  155

Query  174  QRLGIFAGSGVGKSTLLSMLARADAFDKVVIALVGERGREVREFIEDTLGDNLAKSVAVV  233
            QR+GIF+++GVGKSTLL+ML  A   D  V+ L+GERGREVREFI+ TL+++  K   +V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  234  ATSDESPMLRKMAPL-TAVTIAEHYRDKGDNVLLIVDSVTRFAHAIREVATAAGEPPIAR  292
             ++ + P L ++ +L  A TIAE +RD+G  V+L+ DS+TR+A+A RE+A AAGE +++ 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  293  GYPASVFTELPRLLERAGPGAEGTGTITAIISILVDGDNHNDPVADSARGILDGHIVLDR  352
             YP++VF+ LPRLLER+G G    G+ITA+ ++LV+GD+ N+P+AD  R++LDGHIVL R
Sbjct  276  EYPPGVFSALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  353  SLAEEGRYPPIDPLASISRLARKAWTPDQEKLVARLKSLIHRFEETRDLRLIGGYRAGGD  412
             LAE G+YP+ID LA++SR+     + ++ +L A L+  +  ++E   L  IG Y+ G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  413  PDLDMAIKQVPVIYDVLKQTPGERSVAD  440
             D D AI   P I   L+Q+ +E   ++
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDEVCGPE  421

1511) fliI in NC_011666


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  222 bits (826),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 157/340 (47%), Positives = 237/340 (70%), Gaps = 8/340 (2%)

Query  111  GRVVNAFGAPIDGAGPLPQGDRSAMIDAPPPSAMRRARVAWPLRTGVRVIDIFTPLCA-G  169
            GRV+++FG P+DG   LP+  +    DA PP+AM R  ++ PL TG+R ID  +  C+ G
Sbjct  99   GRVIDGFGRPLDGRE-LPEVCWKD-YDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEG  155

Query  170  QRIGIFAGSGVGKSTLLAMLAGSKDFDTVVVALVGERGREVREFLDDALAANRPISVAVV  229
            QR+GIF+++GVGKSTLLAML  + D D+ V+ L+GERGREVREF+D +L+ +      +V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  230  ATGDETPSMRRLAPR-TAMAIAEFFRDRGDRVLLIIDSVTRFAHAARDVALAAGEPPVAR  288
             +  + P++ R+ +   A +IAEFFRD G RV+L+ DS+TR+A+AAR++ALAAGE +V+ 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  289  GYTPSVFSDLPKLLERAgpgeegggSITGVFSVLVDGDDHNDPVADAVRGTLDGHIVLDR  348
             Y P+VFS LP+LLER+  G    GSIT+ ++VLV+GDD N+P+AD VR+ LDGHIVL R
Sbjct  276  EYPPGVFSALPRLLERT--GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  349  AIADQGRFPAVNVLASISRLAQIAWTAEQRDLVVKLRGMIARFEDSSDLRLMGGYKagqd  408
             +A++G++PA++VLA++SR+  +  + E+R+L   LR  +A +++   L  +G Y+ G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  409  adldqavalaPKIYKALQQSPQSTPSADAFRE-LAQSLTG  447
            +D D+A+   P I   L+QS +   +++ + E L Q LT 
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1512) fliI in NC_003911


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  222 bits (827),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 160/360 (45%), Positives = 244/360 (68%), Gaps = 6/360 (1%)

Query  60   GEVLQVEGSTINMLPDSAPEGVSLGNRVV-LHPIPGFAPGRHWLGRVVDPFGRPLDGRPL  118
            +EV+ ++GS   + P ++  G+  G++V+ L+     + G   LGRV+D FGRPLDGR L
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  119  MRGS-KARDLMRAPPPAVQRKPLGQRMATGLAALNTLLPIVRGQRVGLFAGSGVGKSSLL  177
                 K  D M  PPPA+ R+P+ Q + TG+ A++++     GQRVG+F+++GVGKS+LL
Sbjct  115  PEVCWKDYDAM--PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  178  ATLAKSMQADAVVVALIGERGREVNEFVAKALGPEGLARSVIVAATSDQSALVRRRCAWA  237
            A L ++ +AD+ V+ LIGERGREV EF+  +L+ E   R VIV ATSD++AL R R    
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  238  AMTVAESLRDEGLNVLYLADSITRFAEAHREISAAMGEAPALRGYPPSVTPLITGLCERA  297
            A T+AE +RD+G  V+ LADS+TR+A A REI+ A GE++    YPP+V + +  L ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  298  GPGTEKQGDITGVFSVLVAGSDMDEPVADILRGVLDGHIVLNREIAERGRFPAIDISRSV  357
            G G   +G IT+ ++VLV G DM+EP+AD +R++LDGHIVL+R +AERG++PAID+  ++
Sbjct  293  GMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  358  SRSLPDAATPEQNALIGEARRLIGAYEQSEVMIKAGLYSEGADPLLDQAVRVWPELDAFL  417
            SR +P  ++ E+  L +  RR ++ Y++ E++I+ G Y  G D   D+A+   P++ +FL
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

1513) XC_2263 in NC_007086


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  221 bits (824),  Expect = 7e-59, Method: Compositional matrix adjust.
 Identities = 183/378 (49%), Positives = 261/378 (70%), Gaps = 7/378 (1%)

Query  60   MGATCKVEVDGGWVDAEVVGFSGERTYLMPSAELHGLLPNArvvpsrrrggvevgegllg  119
            MG  C +  +     AEVVG++G ++ L P +   GL    +V++ RRR  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGTPLDGKGPIRAEGS-VGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQR  178
            RVID+ G PLDG+    +E    +  +++  ++ R+PIT +L  G+RAI+++   G GQR
Sbjct  100  RVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  179  VGLFAGSGVGKSTLLGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaa  238
            VG+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  239  padrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGY  298
             +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  299  PPSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRV  358
            PP+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+
Sbjct  278  PPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  359  ADSGLYPAIDLESSVSRVVQDIANDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPA  418
            A+ G YPAID+ +++SRV   ++++  R     L+R L+ Y     LI IG YQRG D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  419  TDEALARWPEIVDFLGQD  436
            TD A+   P+I  FL Q 
Sbjct  396  TDKAIDTYPDICTFLRQS  413

1514) fliI in NC_003902


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  221 bits (824),  Expect = 7e-59, Method: Compositional matrix adjust.
 Identities = 183/378 (49%), Positives = 261/378 (70%), Gaps = 7/378 (1%)

Query  60   MGATCKVEVDGGWVDAEVVGFSGERTYLMPSAELHGLLPNArvvpsrrrggvevgegllg  119
            MG  C +  +     AEVVG++G ++ L P +   GL    +V++ RRR  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGTPLDGKGPIRAEGS-VGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQR  178
            RVID+ G PLDG+    +E    +  +++  ++ R+PIT +L  G+RAI+++   G GQR
Sbjct  100  RVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  179  VGLFAGSGVGKSTLLGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaa  238
            VG+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  239  padrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGY  298
             +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  299  PPSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRV  358
            PP+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+
Sbjct  278  PPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  359  ADSGLYPAIDLESSVSRVVQDIANDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPA  418
            A+ G YPAID+ +++SRV   ++++  R     L+R L+ Y     LI IG YQRG D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  419  TDEALARWPEIVDFLGQD  436
            TD A+   P+I  FL Q 
Sbjct  396  TDKAIDTYPDICTFLRQS  413

1515) XCR_2191 in NC_017271


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  221 bits (823),  Expect = 8e-59, Method: Compositional matrix adjust.
 Identities = 183/378 (49%), Positives = 260/378 (69%), Gaps = 7/378 (1%)

Query  60   MGATCKVEVDGGWVDAEVVGFSGERTYLMPSAELHGLLPNArvvpsrrrggvevgegllg  119
            MG  C +  +     AEVVG++G ++ L P +   GL    +V++ RRR  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGTPLDGKGPIRAEGS-VGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQR  178
            RVID+ G PLDG+    +E    +  +++  ++ R+PIT +L  G+RAI+++   G GQR
Sbjct  100  RVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  179  VGLFAGSGVGKSTLLGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaa  238
            VG+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  239  padrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGY  298
             +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  299  PPSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRV  358
            PP+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+
Sbjct  278  PPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  359  ADSGLYPAIDLESSVSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPA  418
            A+ G YPAID+ +++SRV   ++ +  R     L+R L+ Y     LI IG YQRG D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  419  TDEALARWPEIVDFLGQD  436
            TD A+   P+I  FL Q 
Sbjct  396  TDKAIDTYPDICTFLRQS  413

1516) xccb100_2220 in NC_010688


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  221 bits (823),  Expect = 8e-59, Method: Compositional matrix adjust.
 Identities = 183/378 (49%), Positives = 260/378 (69%), Gaps = 7/378 (1%)

Query  60   MGATCKVEVDGGWVDAEVVGFSGERTYLMPSAELHGLLPNArvvpsrrrggvevgegllg  119
            MG  C +  +     AEVVG++G ++ L P +   GL    +V++ RRR  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGTPLDGKGPIRAEGS-VGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQR  178
            RVID+ G PLDG+    +E    +  +++  ++ R+PIT +L  G+RAI+++   G GQR
Sbjct  100  RVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  179  VGLFAGSGVGKSTLLGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaa  238
            VG+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  239  padrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGY  298
             +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  299  PPSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRV  358
            PP+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+
Sbjct  278  PPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  359  ADSGLYPAIDLESSVSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPA  418
            A+ G YPAID+ +++SRV   ++ +  R     L+R L+ Y     LI IG YQRG D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  419  TDEALARWPEIVDFLGQD  436
            TD A+   P+I  FL Q 
Sbjct  396  TDKAIDTYPDICTFLRQS  413

1517) Fbal_2322 in NC_014541


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  220 bits (820),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 180/365 (50%), Positives = 251/365 (69%), Gaps = 3/365 (0%)

Query  55   AEVVGFHRDTLCLMPVTPTDGLVPGARVQPLSGTAPAVIGSGLLGRVLDGCGEPIDGLGP  114
            AEVVG++     L P T+T GL  G +V +L       +G +LLGRV+DG G P+DG   
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RE  113

Query  115  LHKVRSLSGRIHTPNPLLRRPIDAPLDVGVRAINSLLTVGKGQRLGLFAGSGVGKSVLLG  174
            L  V         P +++R+PI  PL  G+RAI+S+ T G GQR+G+F+++GVGKS LL+
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  175  MMTRFTQADIvvvglvgergrevreFIEHSLGPEGRQRavvvvapadataLMRLRAMRLC  234
            M+    +AD  V+ L+GERGREVREFI+ +L+ E R+R V+VVA +D  AL R+RA+ + 
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  235  HRIAAGFRDEGHDVLLLVDSLTRYAQAQREVALSLGEPPATRGYPPSAFTQLPSLVEQAG  294
              IA  FRD+G  V+LL DSLTRYA+A RE+AL+ GE + +  YPP+ F+ LP L+E++G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  295  NGEGGQGSLTALYTVLVEGDDQNDPVADAARAILDGHIVLSRALAEQGHFPAIDVNASAS  354
             GE  +GS+TA+YTVLVEGDD N+P+AD  R++LDGHIVLSR LAE+GH+PAIDV A+ S
Sbjct  294  MGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  355  RLAAQLVEPEDLAAMQRLRHLNARYQEVRELLPLGGYQPGQDAELDLAVQAQPAIAQFLR  414
            R+ + +   E+      LR+  A YQEV  L+ +G YQ G D++ D A+++ P I  FLR
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  415  QGMNE  419
            Q+ +E
Sbjct  412  QSKDE  416

1518) fliI in NC_003919


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  220 bits (820),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 183/378 (49%), Positives = 259/378 (69%), Gaps = 7/378 (1%)

Query  60   MGATCKVEVDGGWVDAEVVGFAGERTYLIPSAELHGLLPNArvvpsrrrggvevgegllg  119
            MG  C +  +     AEVVG+ G ++ L P +   GL    +V++ RRR  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGTPLDGKGPIRAEGS-IGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQR  178
            RVID+ G PLDG+    +E    +  +++  ++ R+PIT +L  G+RAI+++   G GQR
Sbjct  100  RVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  179  VGLFAGSGVGKSTLLGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaa  238
            VG+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  239  padrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGY  298
             +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  299  PPSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRV  358
            PP+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+
Sbjct  278  PPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  359  ADSGLYPAIDLESSVSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPA  418
            A+ G YPAID+ +++SRV   ++ +  R     L+R L+ Y     LI IG YQRG D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  419  TDEALARWPEIVEFLGQD  436
            TD A+   P+I  FL Q 
Sbjct  396  TDKAIDTYPDICTFLRQS  413

1519) fliI in NC_016010


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  220 bits (820),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 183/378 (49%), Positives = 259/378 (69%), Gaps = 7/378 (1%)

Query  60   MGATCKVEVDGGWVDAEVVGFAGERTYLMPSAELHGLLPNArvvpsrrrggvevgegllg  119
            MG  C +  +     AEVVG+ G ++ L P +   GL    +V++ RRR  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGTPLDGKGPIRAEGS-IGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQR  178
            RVID+ G PLDG+    +E    +  +++  ++ R+PIT +L  G+RAI+++   G GQR
Sbjct  100  RVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  179  VGLFAGSGVGKSTLLGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaa  238
            VG+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  239  padrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGY  298
             +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  299  PPSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRV  358
            PP+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+
Sbjct  278  PPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  359  ADSGLYPAIDLESSVSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPA  418
            A+ G YPAID+ +++SRV   ++ +  R     L+R L+ Y     LI IG YQRG D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  419  TDEALARWPEIVEFLGQD  436
            TD A+   P+I  FL Q 
Sbjct  396  TDKAIDTYPDICTFLRQS  413

1520) XAC29_09870 in NC_020800


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  220 bits (820),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 183/378 (49%), Positives = 259/378 (69%), Gaps = 7/378 (1%)

Query  60   MGATCKVEVDGGWVDAEVVGFAGERTYLIPSAELHGLLPNArvvpsrrrggvevgegllg  119
            MG  C +  +     AEVVG+ G ++ L P +   GL    +V++ RRR  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGTPLDGKGPIRAEGS-IGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQR  178
            RVID+ G PLDG+    +E    +  +++  ++ R+PIT +L  G+RAI+++   G GQR
Sbjct  100  RVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  179  VGLFAGSGVGKSTLLGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaa  238
            VG+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  239  padrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGY  298
             +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  299  PPSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRV  358
            PP+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+
Sbjct  278  PPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  359  ADSGLYPAIDLESSVSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPA  418
            A+ G YPAID+ +++SRV   ++ +  R     L+R L+ Y     LI IG YQRG D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  419  TDEALARWPEIVEFLGQD  436
            TD A+   P+I  FL Q 
Sbjct  396  TDKAIDTYPDICTFLRQS  413

1521) fliI in NC_007508


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  220 bits (820),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 183/378 (49%), Positives = 259/378 (69%), Gaps = 7/378 (1%)

Query  60   MGATCKVEVDGGWVDAEVVGFAGERTYLMPSAELHGLLPNArvvpsrrrggvevgegllg  119
            MG  C +  +     AEVVG+ G ++ L P +   GL    +V++ RRR  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGTPLDGKGPIRAEGS-IGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQR  178
            RVID+ G PLDG+    +E    +  +++  ++ R+PIT +L  G+RAI+++   G GQR
Sbjct  100  RVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  179  VGLFAGSGVGKSTLLGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaa  238
            VG+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  239  padrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGY  298
             +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  299  PPSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRV  358
            PP+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+
Sbjct  278  PPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  359  ADSGLYPAIDLESSVSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPA  418
            A+ G YPAID+ +++SRV   ++ +  R     L+R L+ Y     LI IG YQRG D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  419  TDEALARWPEIVEFLGQD  436
            TD A+   P+I  FL Q 
Sbjct  396  TDKAIDTYPDICTFLRQS  413

1522) fliI in NC_020815


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  220 bits (820),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 183/378 (49%), Positives = 259/378 (69%), Gaps = 7/378 (1%)

Query  60   MGATCKVEVDGGWVDAEVVGFAGERTYLMPSAELHGLLPNArvvpsrrrggvevgegllg  119
            MG  C +  +     AEVVG+ G ++ L P +   GL    +V++ RRR  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGTPLDGKGPIRAEGS-IGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQR  178
            RVID+ G PLDG+    +E    +  +++  ++ R+PIT +L  G+RAI+++   G GQR
Sbjct  100  RVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  179  VGLFAGSGVGKSTLLGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaa  238
            VG+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  239  padrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGY  298
             +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  299  PPSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRV  358
            PP+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+
Sbjct  278  PPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  359  ADSGLYPAIDLESSVSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPA  418
            A+ G YPAID+ +++SRV   ++ +  R     L+R L+ Y     LI IG YQRG D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  419  TDEALARWPEIVEFLGQD  436
            TD A+   P+I  FL Q 
Sbjct  396  TDKAIDTYPDICTFLRQS  413

1523) fliI in NC_017080


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  220 bits (818),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 181/366 (50%), Positives = 252/366 (69%), Gaps = 8/366 (2%)

Query  56   AEAVGFEGGRAVLLPLAEADGLRPGDPAHAEQASAAATFPVGGCLLGRVLDALGRPIDGR  115
            AE VG++G++A+L P++ + GL+ G+   A +       PVG  LLGRV+D++GRP+DGR
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQV--PVGEALLGRVIDGFGRPLDGR  112

Query  116  G-PLRGWTPRALEAPPPGACGRALIGQPLATGVRAIDGLMPLGRGQRMGIFAPPGVGKST  174
              P   W  +  +A PP A  R  I QPL TG+RAID++   G GQR+GIF++PGVGKST
Sbjct  113  ELPEVCW--KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  175  LLAACARGCAADvvvvglvgergrevNEFVERTLGPEGLARSVVVVATGDEPAPMrlraa  234
            LLA    +  AD  V+ L+GERGREV EF++ TL+ E   R V+VVAT+D PA  R+RA 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  235  raaTCVAEHFRDGGADVLLLMDSVTRFAQAQRQVGLAAGEPPATRGFPPSVFAALPRLLE  294
              AT +AE FRD G  V+LL DS+TR+A+A R+++LAAGE + +  +PP+VF+ALPRLLE
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  295  RAGPGAGGVGSITALYAVLVEGEEAGADPVSEACRGVLDGHLMLDRKLAERGHHPAIDCC  354
            R+G G    GSITA+Y+VLVEG++   +P+++  R++LDGH++L R+LAERGH PAID  
Sbjct  291  RTGMGEK--GSITAFYTVLVEGDDMN-EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVL  347

Query  355  ASISRVAPHVVDAEHDaarlevlrllaahrDVEDLVAVGAYAAGSRPEADRAIAMKPAMD  414
            A++SRV P V   EH      + R LA  ++VE L+ +G Y  G   ++D+AI   P + 
Sbjct  348  ATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDIC  407

Query  415  TFLRQG  420
            TFLRQ+
Sbjct  408  TFLRQS  413

1524) XOC_2349 in NC_017267


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  220 bits (819),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 185/395 (47%), Positives = 267/395 (68%), Gaps = 10/395 (2%)

Query  60   MGATCKVEVDGGWVDAEVVGFASERTYLMPSAELHGLLPNArvvpsrrrggvevgegllg  119
            MG  C +  +     AEVVG+ + ++ L P +   GL    +V++ RRR  V VGE+LLG
Sbjct  42   MGELCCIKPGEEL--AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  120  rvIDSDGTPLDGKGPIRAEGS-VGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQR  178
            RVID+ G PLDG+    +E    +  +++  ++ R+PIT +L  G+RAI+++   G GQR
Sbjct  100  RVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  179  VGLFAGSGVGKSTLLGMMTRFTAADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaa  238
            VG+F+++GVGKSTLL+M+     AD  V+ LIGERGREVR+F++ TL+EE  +R V+V A
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  239  padrpplarlHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGY  298
             +DRP+L R+++ + AT+IAE FRD+G  V+LL DSLTR+A+A REI+L+ GE + +  Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  299  PPSVFAKLPALVERAGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRV  358
            PP+VF+ LP L+ER+G G K  GSITAFYTVL EGDD ++P+AD  R++LDGHI+LSRR+
Sbjct  278  PPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRL  335

Query  359  ADSGLYPAIDLESSVSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPA  418
            A+ G YPAID+ +++SRV   ++ +  R     L+R L+ Y     LI IG YQRG D  
Sbjct  336  AERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTD  395

Query  419  TDEALARWPEIVEFLGQ---DVHKASVLSDSLSAL  450
            TD A+   P+I  FL Q   +V  + +L + L  +
Sbjct  396  TDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430

1525) ZZ6_0639 in NC_018145


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  219 bits (816),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 162/366 (45%), Positives = 256/366 (70%), Gaps = 5/366 (1%)

Query  62   AEVVGFRGNTTLLMALDADAPHNPGARVEPDRQLSIVHVGDGLLGRVIGALGEPLDNLGP  121
            AEVVG+ G+ +LL ++ + A  + G +V + R+   V VG++LLGRVI+++G PLD  G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GR  112

Query  122  IITDEYWPLVGKMGNP-LNRGRVTQPFDMGVRAINALLTAGVGQRIAIMAGSGVGKSVLM  180
             + +  W   + M  P + R  +TQP+  G+RAI+++ T G GQR++I +++GVGKS L+
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  181  GQMIAGAKADVIVTGLIGERSREVTDFVETKISDDVRPKSvvvavpadhppvLRLRAAMR  240
            + +  ++ AD  V  LIGER+REV +F++  +S++ R + V+V   +D+P++ R+RA   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  241  ATAIAEYFRAKGKNVLLLIDSLTRIAHAQREVGLSLGEPPTIKGYPPSALGLIPRLVERA  300
            AT+IAE+FR +GK V+LL DSLTR A+A RE++L+ GE +    YPP+ ++ +PRL+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  301  GIDIHSKGAITAIYTVLAdgddpddpivdTARAIVDGHIILSRSLAEQGVFPAIDLGKSL  360
            G++   KG+ITA+YTVL +GDD ++P+ D  R+++DGHI+LSR LAE+G +PAID+  +L
Sbjct  293  GMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  361  SRVMSDIISPrhrqaaahlrrlWSVYEENRDLILMGAYRSGTDASIDEAINRHNDVLNFI  420
            SRV + + S  HRQ AA LRR  ++Y+E   LI +G Y+ G D+  D AI+   D+  F+
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  421  RQGQNE  426
            RQ+++E
Sbjct  411  RQSKDE  416

1526) A2cp1_2355 in NC_011891


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  218 bits (812),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 195/418 (47%), Positives = 284/418 (68%), Gaps = 6/418 (1%)

Query  5    LGRVRAALGEAAPLPLRGRVTRLTGLVLEAAVGGVRQGEAVEIRAPGREPLQAEVVGLRD  64
            + R+R     +     +GR+  +++ +L+A + GV  GE   I+ PG E   AEVVG+ +
Sbjct  6    MQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIK-PGEE--LAEVVGING  62

Query  65   DRAVLVPFGDLGGVGLDAEVVPTGRAHTIRAgpgllgrvldglgrpldgAPLPAGLEEW-  123
             +A+L PF   +G+  + +V++  R H +  G +LLGRV+DG+GRPLDG  LP     W 
Sbjct  63   SKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV--CWK  120

Query  124  AVDrpapnplarrpvaaplplGVRVLDGFLTAGEGQRIGLFAGSGVGKSTLLGQLARGAR  183
              D  +P ++ R+P++ PL  G+R +D+  T GEGQR+G+F+++GVGKSTLL+ L  ++ 
Sbjct  121  DYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD  180

Query  184  ADLCVVCLVGERGREVREFLEGPLGAEGLARSVVVAATSDAPALVRLKAAHVATAVAEWF  243
            AD  V+ L+GERGREVREF++  L+ E   R V+V ATSD PAL R++A  VAT++AE F
Sbjct  181  ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFF  240

Query  244  AERGDRVLLLVDSVTRYARALREVGLAAGEPPARQGYPPSVFAALPRLLERAGNRARGGI  303
             + G RV+LL DS+TRYARA RE++LAAGE +    YPP+VF+ALPRLLER+G   +G+I
Sbjct  241  RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSI  300

Query  304  TAVYTVLVAGGDLEEPIADEVRGILDGHVVLDRAVASGGRFPAVDPLQSLSRVMPavaap  363
            TA YTVLV G+D++EP+ADEVR++LDGH+VL R +A  G++PA+D L +LSRV P V++ 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  364  ahlaaagrvrallaaharvrdlvalGAYRAGADPEADLALARLPAIEAFLRQPLGEAA  421
             H   A+ +R  LA    V  L+ +G Y+ G D ++D A+   P I +FLRQ+ +E  
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

1527) Rvan_2563 in NC_014664


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  218 bits (811),  Expect = 7e-58, Method: Compositional matrix adjust.
 Identities = 154/337 (46%), Positives = 238/337 (71%), Gaps = 5/337 (1%)

Query  121  GRVIDALGRPIDNGPPLARGRRSIPVDQAPPLALERQRVSEPVPTGVRVIDVFTPLCA-G  179
            GRVID++GRP+D G  L+   +    D  PP A+ RQ +++P+ TG+R ID  +  C+ G
Sbjct  99   GRVIDGFGRPLD-GRELPEVCWK-DYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEG  155

Query  180  QRIGIFAGSGVGKSTLLSMLTRGSSFDVTVFAAIGERGREVREFIDDTlakaglakavlv  239
            QR+GIF+++GVGKSTLL+ML  ++  D  V+  IGERGREVREFID TL+     + V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  240  vSTSDESPMMRRLAAKTAFTVAEYFRDEGQRVLLVFDSVTRYAHAVREIALSSGEPPVSR  299
            V+TSD +++ R  A   A T+AE+FRD+G+RV+L+ DS+TRYA+A REIAL++GE +VS 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  300  GYPPSVFTDLPKLLERAGNASGTGSITGVFSVLVDGDDHNDPVADTLRGILDGHIVLDRA  359
             YPP+VF+ LP+LLER+G  +  GSIT+ ++VLV+GDD N+P+AD +R++LDGHIVL R 
Sbjct  276  EYPPGVFSALPRLLERTG-MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  360  IADQGRFPAVDILGSVSRLAPRVWSPSQKTAVRDLRGLISRFEETRDIRMIAGHKPNNDA  419
            +A++G++PA+D+L+++SR+ P V S  ++     LR  ++ ++E   +  I+  +   D+
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  420  ELDKAVRLVPALYRYLTQSAEDLHPGETLDDMLRLML  456
            + DKA+   P +  +L QS +++   E L + L+ +L
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1528) fliI in NC_020059


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  217 bits (809),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 144/334 (44%), Positives = 227/334 (68%), Gaps = 11/334 (3%)

Query  115  GRTINSLGEPIDG--LGPLTSGLEARSIANTAPPSMMRKRVETGFRTGVRAIDIFSPLC-  171
            GR I+++G P+DG  L  +      +     +PP+M+R+ +   + TG+RAID  +  C 
Sbjct  99   GRVIDGFGRPLDGRELPEVCW----KDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CG  153

Query  172  LGQRLGIFAGSGVGKSTLLSMLARADAFDKVVIALVGERGREVREFIEDTLGSHMQKSVA  231
             GQR+GIF+++GVGKSTLL+ML  A   D  V+ L+GERGREVREFI+ TL+ + +K   
Sbjct  154  EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCV  213

Query  232  VVATSDESPMLRKMAPL-SAITIAEHFRDKGDNVLLIVDSVTRFAHAIREVATASGEPPI  290
            +V ++ + P L ++ +L  A TIAE FRD+G  V+L+ DS+TR+A+A RE+A A+GE ++
Sbjct  214  IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAV  273

Query  291  ARGYPASVFTELPRLLERAGPGPEGTGTITAIISILVDGDNHNDPIADSTRGILDGHIVL  350
            +  YP++VF+ LPRLLER+G G    G+ITA+ ++LV+GD+ N+P+AD  R++LDGHIVL
Sbjct  274  SGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  351  QRSLAEEGRYPPIDPLASVSRLARKAWTSDQEKLVSRLKALVHRYEETRDLRLIGGYRQG  410
             R LAE G+YP+ID LA++SR+     + ++ +L + L+  +  Y+E   L  IG Y++G
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRG  391

Query  411  ADADLDIAVRQVPIIYDILKQTPGEEPSADAFTD  444
             D+D D A+   P I  +L+Q+ +E  +++ + +
Sbjct  392  VDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIE  425

1529) fliI in NC_010581


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  217 bits (807),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 171/399 (43%), Positives = 269/399 (68%), Gaps = 19/399 (4%)

Query  49   CIKFGEDGSSALGEVVRIDQQNATIKIFDHASSIGLGDKAWRMG---PFQICPDPSWKGR  105
            CIK GE+    L+EVV I+  +A +  F  ++++  G++   M+     Q+  + +  GR
Sbjct  47   CIKPGEE----LAEVVGINGSKALLSPFTSTAGLHCGQQV--MALRRRHQVPVGEALLGR  100

Query  106  VINALGIPIDGGDALRLGEES-QSIHaapppamrrarVTKPMRTGVRVIDLFTPLCA-GQ  163
            VI+++G P+DG +   L E   +  +A PPPAM R  +T+P+ TG+R ID  +  C+ GQ
Sbjct  101  VIDGFGRPLDGRE---LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEGQ  156

Query  164  RIGIFAGSGVGKSTLLGMLAGSREFDTVVIGLVGERGREVREFLDEVLADHLAN-AVTIV  222
            R+GIF+++GVGKSTLL+ML  + + D+ V+ L+GERGREVREF+D  L+++  +  V +V
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  223  ATGDESSLMRRLAPNTAMTIAEFFRDRGENVLLIVDSVTRFAHAARDVALAAGEMAVARG  282
            AT+D ++L R  A   A TIAEFFRD G  V+L+ DS+TR+A+AAR++ALAAGE AV+  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  283  YAPSVFTDLPKLLERAGPGLDGSGSITGIFSVLVDGDDHNEPIADTIRGTLDGHIVLDRA  342
            Y+P+VF+ LP+LLER+G  ++  GSIT++++VLV+GDD NEP+AD +R+ LDGHIVL R 
Sbjct  277  YPPGVFSALPRLLERTG--MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  343  IADQGRFPAVNILRSISRLAQHVWTPEQQGLVLKIRGLIARYEDTRDLRLMGGYQPGSDG  402
            +A++G++PA+++L ++SR+   V + E++ L   +R  +A Y++   L  +G YQ G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  403  ELDQAIALVPKIYQAMEQTPKSPASQDAFRE-LAEILQD  440
            + D+AI   P I   + Q+     + + + E L +IL +
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1530) fliI in NC_008254


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  217 bits (806),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 166/368 (46%), Positives = 253/368 (69%), Gaps = 8/368 (2%)

Query  77   GEVVRISEDDVIVAPFEHSAEASLGQAVFA-TGTLEIRPHASWRGRVIDALARALDDGPA  135
            +EVV I+    +++PF  +A    GQ V A     ++    +  GRVID+++R+LD G  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD-GRE  113

Query  136  LIRSAPQGPAAMPRTPAALRRQRVAEPFLTGVRVVDLFAPLC-LGQRIGIFAGSGVGKST  194
            L     ++  AMP  P+A+ RQ +++P++TG+R +D  A  C  GQR+GIF+++GVGKST
Sbjct  114  LPEVCWKDYDAMP--PPAMVRQPITQPLMTGIRAIDSVAT-CGEGQRVGIFSAPGVGKST  170

Query  195  LLAMLARAEAFDTVVVAMVGERGREVREFLEDTLGEAGMKKTVAVVATSDESammrrraa  254
            LLAML  A   D+ V+ ++GERGREVREF++ TL+E   K+ V VVATSD +A+ R RA 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  255  dtamrVAEHFRDAGEKVLLLLDSITRYAHATREVATGAGEPPVARGYPASVFTDLPRLLE  314
              A  +AE FRD G +V+LL DS+TRYA+A+RE+A +AGE +V+  YP++VF+ LPRLLE
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  315  RAGPGETGHGSITAVFSVLVDGDDHNDPVADCVRGILDGHLVLDRAIAEQGRFPAVSPLA  374
            R+G GE   GSITA ++VLV+GDD N+P+AD VR++LDGH+VL R +AE+G++PA+  LA
Sbjct  291  RTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLA  348

Query  375  SISRLADRSWTDDRKRVVQRLKAMIARFEETRDIRLLGGFQAGLDPELDLAVRQVPLIYD  434
            ++SR+     +++++++   L+  +A ++E   +  +G +Q G+D + D A+   P I  
Sbjct  349  TLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  435  ILRQSPKD  442
            +LRQS  +
Sbjct  409  FLRQSKDE  416

1531) fliI in NC_011833


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  217 bits (806),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 168/379 (45%), Positives = 253/379 (67%), Gaps = 13/379 (3%)

Query  75   KNANINAEVIGFSGEKTFLLSFEDIHGIFPGARVFSKIASNSNFFIKKLPLGMELLGRVL  134
            K ++  AEV+G++G K++L +F    G+  G +V +    +      ++P+G  LLGRV+
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRH------QVPVGEALLGRVI  102

Query  135  DGRGQPLD--QLPKIDHKYYSTIKNYSINPLNRTPITEVLDTGIRAINGLLTIGRGQkig  192
            DG G+PLD  +LP +  K Y ++   +  ++ R PIT+ L TGIRAI+++ T G GQ++G
Sbjct  103  DGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVG  159

Query  193  ifsssgigksillgMIARYTQADIIVIALIGERGREVKDFIENILGLAGLSRSVIIAAPA  252
            IFS++G+GKS LL+M+    +AD  V+ LIGERGREV++FI+  L+     R VI+ A +
Sbjct  160  IFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATS  219

Query  253  DVSPLLKIKAASYATNIAEYFYKNNKHVLLIMDSLTRYAMAQREISLSLGELPVSKGYPS  312
            D ++L +++A   AT IAE+F  N K+V+L+ DSLTRYA A REI+L+ GE +VS  YP+
Sbjct  220  DRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPP  279

Query  313  SIFSKIPNLIERTGIFNKNKGSITSFYTVLTEGEDEQDPVSHLARSVLDGHIMLSRYYAD  372
            ++FS +P L+ERTG+   +KGSIT+FYTVL EG+D ++P+++  RS+LDGHI+LSR  A+
Sbjct  280  GVFSALPRLLERTGM--GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  373  LGHYPAIDIESSISRVMPNIINAKQYSQAFYFKKLVASYQRNRDLINIGAYVSGTDVILD  432
             GHYPAID+ +++SRV P + +  +   A  +++ +A YQ    LI IG Y  G D   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  433  HAIKIWPKLEKFLQQEISE  451
             AI   P +  FL+Q   E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

1532) fliI in NC_002528


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  217 bits (806),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 168/379 (45%), Positives = 253/379 (67%), Gaps = 13/379 (3%)

Query  75   KNANINAEVIGFSGEKTFLLSFEDIHGIFPGARVFSKIASNSNFFIKKLPLGMELLGRVL  134
            K ++  AEV+G++G K++L +F    G+  G +V +    +      ++P+G  LLGRV+
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRH------QVPVGEALLGRVI  102

Query  135  DGRGQPLD--QLPKIDHKYYSTIKNYSINPLNRTPITEVLDTGIRAINGLLTIGRGQkig  192
            DG G+PLD  +LP +  K Y ++   +  ++ R PIT+ L TGIRAI+++ T G GQ++G
Sbjct  103  DGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVG  159

Query  193  ifsssgigksillgMIARYTQADIIVIALIGERGREVKDFIENILGLAGLSRSVIIAAPA  252
            IFS++G+GKS LL+M+    +AD  V+ LIGERGREV++FI+  L+     R VI+ A +
Sbjct  160  IFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATS  219

Query  253  DVSPLLKIKAASYATNIAEYFYKNNKHVLLIMDSLTRYAMAQREISLSLGELPVSKGYPS  312
            D ++L +++A   AT IAE+F  N K+V+L+ DSLTRYA A REI+L+ GE +VS  YP+
Sbjct  220  DRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPP  279

Query  313  SIFSKIPNLIERTGIFNKNKGSITSFYTVLTEGEDEQDPVSHLARSVLDGHIMLSRYYAD  372
            ++FS +P L+ERTG+   +KGSIT+FYTVL EG+D ++P+++  RS+LDGHI+LSR  A+
Sbjct  280  GVFSALPRLLERTGM--GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  373  LGHYPAIDIESSISRVMPNIINAKQYSQAFYFKKLVASYQRNRDLINIGAYVSGTDVILD  432
             GHYPAID+ +++SRV P + +  +   A  +++ +A YQ    LI IG Y  G D   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  433  HAIKIWPKLEKFLQQEISE  451
             AI   P +  FL+Q   E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

1533) CWU_00450 in NC_017254


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  217 bits (806),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 168/379 (45%), Positives = 253/379 (67%), Gaps = 13/379 (3%)

Query  71   KNANINAEVIGFSGEKTFLLSFEDIHGIFPGARVFSKIASNSNFFIKKLPLGMELLGRVL  130
            K ++  AEV+G++G K++L +F    G+  G +V +    +      ++P+G  LLGRV+
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRH------QVPVGEALLGRVI  102

Query  131  DGRGQPLD--QLPKIDHKYYSTIKNYSINPLNRTPITEVLDTGIRAINGLLTIGRGQkig  188
            DG G+PLD  +LP +  K Y ++   +  ++ R PIT+ L TGIRAI+++ T G GQ++G
Sbjct  103  DGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVG  159

Query  189  ifsssgigksillgMIARYTQADIIVIALIGERGREVKDFIENILGLAGLSRSVIIAAPA  248
            IFS++G+GKS LL+M+    +AD  V+ LIGERGREV++FI+  L+     R VI+ A +
Sbjct  160  IFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATS  219

Query  249  DVSPLLKIKAASYATNIAEYFYKNNKHVLLIMDSLTRYAMAQREISLSLGELPVSKGYPS  308
            D ++L +++A   AT IAE+F  N K+V+L+ DSLTRYA A REI+L+ GE +VS  YP+
Sbjct  220  DRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPP  279

Query  309  SIFSKIPNLIERTGIFNKNKGSITSFYTVLTEGEDEQDPVSHLARSVLDGHIMLSRYYAD  368
            ++FS +P L+ERTG+   +KGSIT+FYTVL EG+D ++P+++  RS+LDGHI+LSR  A+
Sbjct  280  GVFSALPRLLERTGM--GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  369  LGHYPAIDIESSISRVMPNIINAKQYSQAFYFKKLVASYQRNRDLINIGAYVSGTDVILD  428
             GHYPAID+ +++SRV P + +  +   A  +++ +A YQ    LI IG Y  G D   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  429  HAIKIWPKLEKFLQQEISE  447
             AI   P +  FL+Q   E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

1534) CWS_00360 in NC_017253


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  217 bits (806),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 168/379 (45%), Positives = 253/379 (67%), Gaps = 13/379 (3%)

Query  71   KNANINAEVIGFSGEKTFLLSFEDIHGIFPGARVFSKIASNSNFFIKKLPLGMELLGRVL  130
            K ++  AEV+G++G K++L +F    G+  G +V +    +      ++P+G  LLGRV+
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRH------QVPVGEALLGRVI  102

Query  131  DGRGQPLD--QLPKIDHKYYSTIKNYSINPLNRTPITEVLDTGIRAINGLLTIGRGQkig  188
            DG G+PLD  +LP +  K Y ++   +  ++ R PIT+ L TGIRAI+++ T G GQ++G
Sbjct  103  DGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVG  159

Query  189  ifsssgigksillgMIARYTQADIIVIALIGERGREVKDFIENILGLAGLSRSVIIAAPA  248
            IFS++G+GKS LL+M+    +AD  V+ LIGERGREV++FI+  L+     R VI+ A +
Sbjct  160  IFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATS  219

Query  249  DVSPLLKIKAASYATNIAEYFYKNNKHVLLIMDSLTRYAMAQREISLSLGELPVSKGYPS  308
            D ++L +++A   AT IAE+F  N K+V+L+ DSLTRYA A REI+L+ GE +VS  YP+
Sbjct  220  DRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPP  279

Query  309  SIFSKIPNLIERTGIFNKNKGSITSFYTVLTEGEDEQDPVSHLARSVLDGHIMLSRYYAD  368
            ++FS +P L+ERTG+   +KGSIT+FYTVL EG+D ++P+++  RS+LDGHI+LSR  A+
Sbjct  280  GVFSALPRLLERTGM--GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  369  LGHYPAIDIESSISRVMPNIINAKQYSQAFYFKKLVASYQRNRDLINIGAYVSGTDVILD  428
             GHYPAID+ +++SRV P + +  +   A  +++ +A YQ    LI IG Y  G D   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  429  HAIKIWPKLEKFLQQEISE  447
             AI   P +  FL+Q   E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

1535) CWO_00350 in NC_017255


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  217 bits (806),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 168/379 (45%), Positives = 253/379 (67%), Gaps = 13/379 (3%)

Query  61   KNANINAEVIGFSGEKTFLLSFEDIHGIFPGARVFSKIASNSNFFIKKLPLGMELLGRVL  120
            K ++  AEV+G++G K++L +F    G+  G +V +    +      ++P+G  LLGRV+
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRH------QVPVGEALLGRVI  102

Query  121  DGRGQPLD--QLPKIDHKYYSTIKNYSINPLNRTPITEVLDTGIRAINGLLTIGRGQkig  178
            DG G+PLD  +LP +  K Y ++   +  ++ R PIT+ L TGIRAI+++ T G GQ++G
Sbjct  103  DGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVG  159

Query  179  ifsssgigksillgMIARYTQADIIVIALIGERGREVKDFIENILGLAGLSRSVIIAAPA  238
            IFS++G+GKS LL+M+    +AD  V+ LIGERGREV++FI+  L+     R VI+ A +
Sbjct  160  IFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATS  219

Query  239  DVSPLLKIKAASYATNIAEYFYKNNKHVLLIMDSLTRYAMAQREISLSLGELPVSKGYPS  298
            D ++L +++A   AT IAE+F  N K+V+L+ DSLTRYA A REI+L+ GE +VS  YP+
Sbjct  220  DRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPP  279

Query  299  SIFSKIPNLIERTGIFNKNKGSITSFYTVLTEGEDEQDPVSHLARSVLDGHIMLSRYYAD  358
            ++FS +P L+ERTG+   +KGSIT+FYTVL EG+D ++P+++  RS+LDGHI+LSR  A+
Sbjct  280  GVFSALPRLLERTGM--GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  359  LGHYPAIDIESSISRVMPNIINAKQYSQAFYFKKLVASYQRNRDLINIGAYVSGTDVILD  418
             GHYPAID+ +++SRV P + +  +   A  +++ +A YQ    LI IG Y  G D   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  419  HAIKIWPKLEKFLQQEISE  437
             AI   P +  FL+Q   E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

1536) CWQ_00380 in NC_017252


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  217 bits (806),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 168/379 (45%), Positives = 253/379 (67%), Gaps = 13/379 (3%)

Query  71   KNANINAEVIGFSGEKTFLLSFEDIHGIFPGARVFSKIASNSNFFIKKLPLGMELLGRVL  130
            K ++  AEV+G++G K++L +F    G+  G +V +    +      ++P+G  LLGRV+
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRH------QVPVGEALLGRVI  102

Query  131  DGRGQPLD--QLPKIDHKYYSTIKNYSINPLNRTPITEVLDTGIRAINGLLTIGRGQkig  188
            DG G+PLD  +LP +  K Y ++   +  ++ R PIT+ L TGIRAI+++ T G GQ++G
Sbjct  103  DGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVG  159

Query  189  ifsssgigksillgMIARYTQADIIVIALIGERGREVKDFIENILGLAGLSRSVIIAAPA  248
            IFS++G+GKS LL+M+    +AD  V+ LIGERGREV++FI+  L+     R VI+ A +
Sbjct  160  IFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATS  219

Query  249  DVSPLLKIKAASYATNIAEYFYKNNKHVLLIMDSLTRYAMAQREISLSLGELPVSKGYPS  308
            D ++L +++A   AT IAE+F  N K+V+L+ DSLTRYA A REI+L+ GE +VS  YP+
Sbjct  220  DRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPP  279

Query  309  SIFSKIPNLIERTGIFNKNKGSITSFYTVLTEGEDEQDPVSHLARSVLDGHIMLSRYYAD  368
            ++FS +P L+ERTG+   +KGSIT+FYTVL EG+D ++P+++  RS+LDGHI+LSR  A+
Sbjct  280  GVFSALPRLLERTGM--GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  369  LGHYPAIDIESSISRVMPNIINAKQYSQAFYFKKLVASYQRNRDLINIGAYVSGTDVILD  428
             GHYPAID+ +++SRV P + +  +   A  +++ +A YQ    LI IG Y  G D   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  429  HAIKIWPKLEKFLQQEISE  447
             AI   P +  FL+Q   E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

1537) fliI in NC_011834


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  217 bits (806),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 168/379 (45%), Positives = 253/379 (67%), Gaps = 13/379 (3%)

Query  75   KNANINAEVIGFSGEKTFLLSFEDIHGIFPGARVFSKIASNSNFFIKKLPLGMELLGRVL  134
            K ++  AEV+G++G K++L +F    G+  G +V +    +      ++P+G  LLGRV+
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRH------QVPVGEALLGRVI  102

Query  135  DGRGQPLD--QLPKIDHKYYSTIKNYSINPLNRTPITEVLDTGIRAINGLLTIGRGQkig  192
            DG G+PLD  +LP +  K Y ++   +  ++ R PIT+ L TGIRAI+++ T G GQ++G
Sbjct  103  DGFGRPLDGRELPEVCWKDYDAM---PPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVG  159

Query  193  ifsssgigksillgMIARYTQADIIVIALIGERGREVKDFIENILGLAGLSRSVIIAAPA  252
            IFS++G+GKS LL+M+    +AD  V+ LIGERGREV++FI+  L+     R VI+ A +
Sbjct  160  IFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATS  219

Query  253  DVSPLLKIKAASYATNIAEYFYKNNKHVLLIMDSLTRYAMAQREISLSLGELPVSKGYPS  312
            D ++L +++A   AT IAE+F  N K+V+L+ DSLTRYA A REI+L+ GE +VS  YP+
Sbjct  220  DRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPP  279

Query  313  SIFSKIPNLIERTGIFNKNKGSITSFYTVLTEGEDEQDPVSHLARSVLDGHIMLSRYYAD  372
            ++FS +P L+ERTG+   +KGSIT+FYTVL EG+D ++P+++  RS+LDGHI+LSR  A+
Sbjct  280  GVFSALPRLLERTGM--GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  373  LGHYPAIDIESSISRVMPNIINAKQYSQAFYFKKLVASYQRNRDLINIGAYVSGTDVILD  432
             GHYPAID+ +++SRV P + +  +   A  +++ +A YQ    LI IG Y  G D   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  433  HAIKIWPKLEKFLQQEISE  451
             AI   P +  FL+Q   E
Sbjct  398  KAIDTYPDICTFLRQSKDE  416

1538) fliI in NC_011985


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  217 bits (806),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 143/332 (44%), Positives = 225/332 (68%), Gaps = 7/332 (2%)

Query  115  GRTINSLGEPIDGLGPLTAGTQPRSISNTAPPSMTRKRVETGFKTGVRAIDIFSPLC-LG  173
            GR I+++G P+DG     +    +     +PP+M R+ +   + TG+RAID  +  C  G
Sbjct  99   GRVIDGFGRPLDGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEG  155

Query  174  QRLGIFAGSGVGKSTLLSMLARADAFDKVVIALVGERGREVREFIEDTLGTHMQKSVAVV  233
            QR+GIF+++GVGKSTLL+ML  A   D  V+ L+GERGREVREFI+ TL+ + +K   +V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  234  ATSDESPMLRKMAPL-SAITIAEHFRDQGDNVLLIVDSVTRFAHAIREVATASGEPPIAR  292
             ++ + P L ++ +L  A TIAE FRD+G  V+L+ DS+TR+A+A RE+A A+GE +++ 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  293  GYPASVFTELPRLLERAGPGPEGTGTITAIISILVDGDNHNDPIADSTRGILDGHIVLQR  352
             YP++VF+ LPRLLER+G G    G+ITA+ ++LV+GD+ N+P+AD  R++LDGHIVL R
Sbjct  276  EYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  353  SLAEEGRYPPIDPLASVSRLARKAWTPDQEKLVSRLKALVHRYEETRDLRLIGGYRQGAD  412
             LAE G+YP+ID LA++SR+     + ++ +L + L+  +  Y+E   L  IG Y++G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  413  ADLDIAVRQVPIIYEILKQTPGERPSADAFTD  444
            +D D A+   P I  +L+Q+ +E  +++ + +
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDEVCGPELLIE  425

1539) TM1040_2966 in NC_008044


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  217 bits (806),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 150/359 (42%), Positives = 240/359 (67%), Gaps = 4/359 (1%)

Query  59   GEVLAIGSDHIRMLPDTAPERASIGDAVL-LFQTPEFAPDDSWVGRVIDPFGEPLDGKPM  117
            +EV++I +    + P T+      G+ V+ L +  + + +++ +GRVID FG PLDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  118  LRGVESRDLMESPPKAAARRGLGKRLSTGLAILNTVLPIVTGQRIGLFAGSGVGKSTLMA  177
            L  V  +D    PP A  R+ + + L TG+  +++V     GQR+G+F+++GVGKSTL+A
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  178  QLAQNMEADVVVMALIGERGREVNHFVKEVLGPEGMKRAVVVAATSDQSALVRRRCAWAA  237
             L +  +AD  V+ LIGERGREV +F+   L+ E  KR V+V ATSD++AL R R    A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  238  MSVAEHFRDQGLNVLFMADSITRFAEAHREIAVASGEAPALRGFPPSVTPLITGLCERAG  297
             ++AE FRD+G  V+++ADS+TR+A A REIA+A+GE++    +PP+V + +  L ER+ 
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT-  292

Query  298  PGLEGQGDITAVFSVLVAGSDMDEPIADILRGVLDGHIVLNREIAERGRFPAIDVSRSVS  357
             G+  +G ITA ++VLV G DM+EP+AD +R++LDGHIVL+R +AERG++PAIDV  ++S
Sbjct  293  -GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  358  RSLPAAATKEENEMILAVRKFLGAYEQSEVMIRAGLYSEGNDLVLDQAVKIWPELDSFF  416
            R +P  ++ E+ ++   +R+ L+ Y++ E++IR G Y  G D   D+A+   P++ +F+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

1540) fliI in NC_017256


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  217 bits (809),  Expect = 9e-58, Method: Compositional matrix adjust.
 Identities = 173/416 (42%), Positives = 266/416 (64%), Gaps = 22/416 (5%)

Query  27   NYGRLVSINGLVVEVVGLRMP---IGSECFIERIIDGKNLNIHAEVIGFSGKKTILLSFE  83
             Y R   I+++   ++  ++P   +G  C I     G +L   AEV+G++G K++L +F 
Sbjct  18   GYCRWGRIQDVSATLLNAWLPGVFMGELCCIKP---GEEL---AEVVGINGSKALLSPFT  71

Query  84   EIDGVFPGARVFSKLGNDANSIIKKMPLSIKLLGRVLNGRGQPLD--QLPKIDHKYYTII  141
               G+  G +V       A     ++P++  LLGRV++G G+PLD  +LP +  K Y  +
Sbjct  72   STAGLHCGQQVM------ALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAM  125

Query  142  KNYNINPLNRTPITEILDTGIRAINGLLTIGRGQkigifsssgigksillgMMARYTKAD  201
                  ++ R PIT+ L TGIRAI+++ T G GQ++GIFS++G+GKS LL+M+     AD
Sbjct  126  PP---PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD  182

Query  202  VIVIALIGERGREVKDFIENILGVEGLSRSVVIAAPADVSPLLKIQAASYAANIAEYFYK  261
              V+ LIGERGREV++FI+  L+ E   R V++ A +D ++L +++A   A+ IAE+F  
Sbjct  183  SNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRD  242

Query  262  KNKHVLLIMDSLTRYAMAQREISLSLGELPVSKGYPSSIFSKIPNLVERTGVYNKNKGSI  321
            + K+V+L+ DSLTRYA A REI+L+ GE +VS  YP+++FS +P L+ERTG+   +KGSI
Sbjct  243  NGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM--GEKGSI  300

Query  322  TSFYTVLTEGEDEQDPVSHLARSILDGHIILSRYYADLGHYPAIDIESSISRVMPNIINS  381
            T+FYTVL EG+D ++P+++  RS+LDGHI+LSR  A+ GHYPAID+ +++SRV P + + 
Sbjct  301  TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSH  360

Query  382  TQNHQALYFKKLVASYQRNRELINIGAYITGTDLVLDHAIKIWPKLEKFLQQEISE  437
             + + A  +++ +A YQ    LI IG Y  G D   D AI   P +  FL+Q   E
Sbjct  361  EHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1541) fliI in NC_020549


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  216 bits (805),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 145/331 (44%), Positives = 229/331 (70%), Gaps = 5/331 (1%)

Query  103  GRVINALGKPIdgddslgkgdlsMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQ  162
            GRVI+++G+P+DG +         + M+  PPAM RQ + + + TGIR ID  +   +GQ
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAMP--PPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  163  RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVA  222
            R+G+F+++G+GKSTLL+M+  +   D  ++ L+GERGREVREFI+  L+++ +K  V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  223  TSDESPILRKMAPL-TAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARG  281
            ++ + P L ++ +L  A TIAE+F  +G  V+L+ DS+TR+A++ REIA  +GE +V+  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  282  YPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRS  341
            YP +VFS LPRLLER G +EK  G+ITA  +VLV+GD+ N+P+AD VRS+LDGHIVL+R 
Sbjct  277  YPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  342  LAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDL  401
            LAE G+YP++D LA++SR+     S ++++L + L + +  ++E   +  IG Y+ GVD 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  402  ILDKAVHQVPIIYDFLKQSPSDLSSEDVFQE  432
              DKA++  P I  FL+QS  ++ + +++ E
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIE  425

1542) fliI in NC_012985


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  216 bits (805),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 145/331 (44%), Positives = 229/331 (70%), Gaps = 5/331 (1%)

Query  103  GRVINALGKPIdgddslgkgdlsMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQ  162
            GRVI+++G+P+DG +         + M+  PPAM RQ + + + TGIR ID  +   +GQ
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAMP--PPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  163  RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVA  222
            R+G+F+++G+GKSTLL+M+  +   D  ++ L+GERGREVREFI+  L+++ +K  V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  223  TSDESPILRKMAPL-TAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARG  281
            ++ + P L ++ +L  A TIAE+F  +G  V+L+ DS+TR+A++ REIA  +GE +V+  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  282  YPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRS  341
            YP +VFS LPRLLER G +EK  G+ITA  +VLV+GD+ N+P+AD VRS+LDGHIVL+R 
Sbjct  277  YPPGVFSALPRLLERTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  342  LAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDL  401
            LAE G+YP++D LA++SR+     S ++++L + L + +  ++E   +  IG Y+ GVD 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  402  ILDKAVHQVPIIYDFLKQSPSDLSSEDVFQE  432
              DKA++  P I  FL+QS  ++ + +++ E
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIE  425

1543) fliI in NC_014006


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  216 bits (803),  Expect = 3e-57, Method: Compositional matrix adjust.
 Identities = 153/364 (43%), Positives = 243/364 (67%), Gaps = 6/364 (1%)

Query  62   AEVVGFRGDRTLLVPLDADAPLENGARVEPDSQATMVQVGEGLIGRVIDAMGQPLDRKGP  121
            AEVVG+ G ++LL P+ + A L+ G +V +  +   V VGE+L+GRVID+ G+PLD  G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GR  112

Query  122  IIAGGSWP-LNGVKGNVLDRGRVTEPFDLGVRAVNALLTAGRGQRIAIIAGSGVGKSVLM  180
             ++   W   +++    + R  +T+P+  G+RA++++ T G GQR++I++++GVGKS L+
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  181  GQMIQGAEADIVVAGLIGERGREVSDFLETKLKGAMHKSIVVAVPADHPPVLrlraaara  240
            + + ++++AD  V  LIGERGREV +F++  L    +K  V+ V++ + P L    A   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  241  taiaeyf-raRGKKVLLLIDSLTRCAHAQREIGLALGEPPAMKGYPPSALALIPRLVERA  299
            ++    F R  GK+V+LL DSLTR A+A REI+LA GE +    YPP+ ++ +PRL+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  300  GVDARSGGSITALYTVLADGDDTDDPIVDAARAIVDGHFVLSRHLSEQAIFPAIDVGKSL  359
            G++ +  GSITA+YTVL +GDD ++P+ D  R+++DGH+VLSR+L+E++ +PAIDV  +L
Sbjct  293  GMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  360  SRVMADVVPDEHRMaaaayrrlwaayEENRDLILMGAYRPGNDPVIDEAVQRRQEILDFI  419
            SRV + V ++EHR  AA  RR  A Y+E   LI +G Y+ G D   D A++   +I  F+
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  420  RQDQ  423
            RQ +
Sbjct  411  RQSK  414

1544) Sphch_2648 in NC_015593


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  216 bits (803),  Expect = 3e-57, Method: Compositional matrix adjust.
 Identities = 152/364 (42%), Positives = 244/364 (68%), Gaps = 6/364 (1%)

Query  62   AEVVGFRGGRTLLVPLDADAPLENGARVEPDSQATMVQVGDGLIGRVIDAMGQPLDRKGP  121
            AEVVG+ G+++LL P+ + A L+ G +V +  +   V VG++L+GRVID+ G+PLD  G 
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GR  112

Query  122  IIAGGSWP-LNGVKGNVLDRGRVTEPFDLGVRAVNALLTAGRGQRIAIIAGSGVGKSVLM  180
             ++   W   +++    + R  +T+P+  G+RA++++ T G GQR++I++++GVGKS L+
Sbjct  113  ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  181  GQMIQGAEADIVVAGLIGERGREVSDFLETKLKGAMHKSIVVAVPADHPPVLrlraaara  240
            + + ++++AD  V  LIGERGREV +F++  L    +K  V+ V++ + P L    A   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  241  taiaeyf-raRGKKVLLLIDSLTRCAHAQREIGLALGEPPAMKGYPPSALALIPRLVERA  299
            ++    F R  GK+V+LL DSLTR A+A REI+LA GE +    YPP+ ++ +PRL+ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  300  GVDTRSGGSITALYTVLADGDDTDDPIVDAARAIVDGHFVLSRHLSEQAIFPAIDVGKSL  359
            G++ +  GSITA+YTVL +GDD ++P+ D  R+++DGH+VLSR+L+E++ +PAIDV  +L
Sbjct  293  GMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  360  SRVMADVVPDEHRMaaaayrrlwaayEENRDLILMGAYRPGNDPVIDEAVQRRQEILDFI  419
            SRV + V ++EHR  AA  RR  A Y+E   LI +G Y+ G D   D A++   +I  F+
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  420  RQDQ  423
            RQ +
Sbjct  411  RQSK  414

1545) B488_01870 in NC_019907


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  215 bits (799),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 140/318 (45%), Positives = 222/318 (70%), Gaps = 5/318 (1%)

Query  104  GRVINALGEAIDGRPALEKGRSIMSISSNAPLSMNRQRVERGFKTGIRVIDIFTPFCHGQ  163
            GRVI+++G ++DGR   E  +      + +P +M RQ + + + TGIR ID  +   +GQ
Sbjct  99   GRVIDGFGRPLDGRELPEVCW--KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  164  RLGVFSGSGVGKSTLLSMLVHVNTFDKIVIALVGERGREVREFIEDVLGNDLENFVIVVA  223
            R+G+FS++GVGKSTLL+ML +    D  V+ L+GERGREVREFI+  L+++  +  ++V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  224  TGDESPILRRMAPL-TSVTIAEYFCSQGDNVLLIIDSITRFSHAIRELAMSSGELPVARG  282
            +  + P L R+ +L  + TIAE+F  +G  V+L+ DS+TR+++A RE+A+++GE +V+  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  283  YPPSVFTELSRLLERTGPGIEGKGNITAIVSILVDGDNHNDPISDSVRGILDGHIVLKRS  342
            YPP+VF+ L+RLLERTG G   KG+ITA+ ++LV+GD+ N+P++D VR++LDGHIVL R 
Sbjct  277  YPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  343  LAEEGRYPPVDPLASISRLAHKVWNLEESQLVSRLKLLISRFEETRDFRLVGGYRSGVDL  402
            LAE G+YP++D LA++SR+   V + E+ QL + L+  ++ ++E   +  +G Y+ GVD 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  403  DLDIAVQQVPVIYEFLKQ  420
            D D A++  P I  FL+Q
Sbjct  395  DTDKAIDTYPDICTFLRQ  412

1546) fliI in NC_014034


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (796),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 151/348 (44%), Positives = 232/348 (67%), Gaps = 4/348 (1%)

Query  77   AVEGVAIGDRVEVLGQ-AGIAPDDSWIGRIVDPFGRPLDGRPLLRGGHDRNIratpppaa  135
            +  G+  G++V  L +   ++ +++ +GR++D FGRPLDGR L      ++  A PPPA 
Sbjct  72   STAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL-PEVCWKDYDAMPPPAM  130

Query  136  frrrLGERVETGLDAFNTLLPLVRGQRIGLFAGSGVGKSSLLAKFAKGVAADVVVIALIG  195
             R+ + + + TG+ A++++     GQR+G+F+++GVGKS+LLA + ++  AD  V+ LIG
Sbjct  131  VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG  190

Query  196  ERGRELREFVEKTLGPEGMARSVIVAATSDQSPLVRRRCGWAAMTVAEYFRDQGKHVLFL  255
            ERGRE+REF++ TL+ E   R VIV ATSD+++L R R    A T+AE+FRD+GK+V++L
Sbjct  191  ERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLL  250

Query  256  ADSVTRFAEAHREVALAAGEPPSLRGYPPSTSHQIMSLAERSGPGMEGAGDITAVFSVLV  315
            ADS+TR+A A RE+ALAAGE +    YPP+    +  L ER+  GM   G ITA ++VLV
Sbjct  251  ADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT--GMGEKGSITAFYTVLV  308

Query  316  AGSDMEEPVADILRGTLDGHVVLDRGIAERGRFPAIDLLRSVSRSLPEAATPAENELIAK  375
             G DM+EP+AD +R+ LDGH+VL R +AERG++PAID+L ++SR +P  ++  + +L A 
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  376  ARKLLGAYDRAEMMIQAGLYAAGSDPVIDAAIKVWPALDGFLARDAAD  423
             R+ L+ Y+  E++I+ G Y  G D   D AI   P +  FL +   +
Sbjct  369  LRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1547) PSE_2592 in NC_016642


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 162/389 (42%), Positives = 271/389 (70%), Gaps = 11/389 (2%)

Query  55   NNGEEFGEVIRIEPDSVLVKPYASRSDLGLGIKV---KRCGELSFYPDNSWRGRIINAFG  111
            + GEE++EV+ I+    L+ P++S ++L  G +V   +R  +++   +++  GR+I++FG
Sbjct  49   KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVP--VGEALLGRVIDGFG  106

Query  112  HPIDGLGSMAEGPTLASFNNLPPPPVHRARVKDAALTGVRVLDLFTPICHGQRLGIFAGS  171
            +P+DG   ++E      ++ +PPP++ R  + ++ +TG+R +D  +   +GQR+GIF+++
Sbjct  107  RPLDG-RELPEV-CWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAP  164

Query  172  GVGKSTLLSMIARSNSFDTVVIGLIgergrevrefveeTLGDQLSKSVVVVATGDESPMM  231
            GVGKSTLL+M+  +   D+ V+ LIGERGREVREF++ TL+++  K  V+V +  + P +
Sbjct  165  GVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL  224

Query  232  RRLAPK-TAMTVAEHFRDQGQSVLLIVDSVTRYAHALRDVALAAGEPALSRGYPPSVFSE  290
             R+ +   A T+AE FRD+G+ V+L+ DS+TRYA+A R++ALAAGE A+S  YPP+VFS 
Sbjct  225  ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSA  284

Query  291  LPLLLERAGPGIEGSGMMTAIFSVLVDGDDHNDPVADNIRGLLDGHVVLDRHIAEEGRYP  350
            LP LLER+G G  GS  +TA+++VLV+GDD N+P+AD++R+LLDGH+VL R++AE G+YP
Sbjct  285  LPRLLERTGMGEKGS--ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYP  342

Query  351  AVNVLGSISRLAQSCWSPQERELITKLKAMIAKFEDTKDLRMMGGYKEGVDPLLDQAIEI  410
            A++VL+++SR+     S ++R+L + L+  +A +++   L  +G Y+ GVD   D+AI+ 
Sbjct  343  AIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDT  402

Query  411  APKIYSALVQGLDAPSSQDAFNE-LAQLL  438
             P I + L Q+ D   + + + E L Q+L
Sbjct  403  YPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1548) fliI in NC_016798


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1549) CTO_0779 in NC_017437


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1550) A363_00771 in NC_020966


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1551) A5291_00770 in NC_020939


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1552) fliI in NC_007429


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1553) fliI in NC_012687


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1554) fliI in NC_017434


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1555) fliI in NC_017436


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1556) SOTOND5_00762 in NC_020943


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1557) SOTOND6_00762 in NC_020968


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1558) fliI in NC_000117


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1559) G11074_03790 in NC_017440


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1560) G11222_03815 in NC_017430


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1561) CTG9301_03805 in NC_017432


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1562) G9768_03795 in NC_017429


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1563) SOTONG1_00763 in NC_020941


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1564) SOTONIA1_00765 in NC_020970


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1565) CTJTET1_03835 in NC_021892


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1566) SOTONK1_00762 in NC_020965


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1567) CTL2C_31 in NC_015744


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1568) CTRC953_03780 in NC_021889


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1569) CTRC122_03840 in NC_021891


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1570) A7249_00769 in NC_020944


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1571) SOTONIA3_00765 in NC_020940


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1572) O177_03965 in NC_022109


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1573) O178_03985 in NC_022120


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1574) O180_03970 in NC_022121


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1575) fliI1 in NC_012559


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  214 bits (798),  Expect = 8e-57, Method: Compositional matrix adjust.
 Identities = 159/334 (48%), Positives = 230/334 (69%), Gaps = 5/334 (1%)

Query  115  RRVPVGMKLLGRIVDSLGRPLDEAGPVHPDTFYP-LHAAPINPLDRDPVRSSMDVGVRAI  173
            ++VPVG  LLGR++D++GRPLD  G   P+      +A P  ++ R+P+  ++  G+RAI
Sbjct  89   HQVPVGEALLGRVIDGFGRPLD--GRELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAI  146

Query  174  NGLLTVGRGQRLGLFAGSGVGKSVLLGMMAKYTRADVVVVGLIGERGREVKDFIENILGE  233
            +++ T G GQR+G+F+++GVGKS LL+M+ +   AD  V+ LIGERGREV++FI+  L+E
Sbjct  147  DSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSE  206

Query  234  EGLaravvvaapaDTPPLMRLHGAAYATALAEYYRDQGLDVLLLMDSVTRYAMAQREIAL  293
            E   R V+V A +D P+L R+++   AT++AE++RD+G  V+LL DS+TRYA A REIAL
Sbjct  207  ETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIAL  266

Query  294  AIGEPPVTRGYPPSVFAKLPQLIERAGNGRAGGGSITAFYTVLSEGDDQQDPVADSSRAI  353
            A GE +V+  YPP+VF+ LP+L+ER+G G    GSITAFYTVL EGDD ++P+AD  R++
Sbjct  267  AAGETAVSGEYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDDMNEPLADEVRSL  324

Query  354  LDGHFVLNRRLAEAGHYPAIDIEQSISrvmvdvvsadhvasarrFKQFYSRYQRNLDLIS  413
            LDGH+VL+RRLAE GHYPAID+  ++SRV   V S +H   A  +++  + YQ    LI 
Sbjct  325  LDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIR  384

Query  414  VGAYVSGADPMLDEAIRRHDMMESFLIQPAHKAS  447
            +G Y  G D   D AI     + +FL Q+ +   
Sbjct  385  IGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

1576) fliI in NC_012686


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  213 bits (792),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLSSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   + +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1577) CTRC69_03820 in NC_021895


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  213 bits (794),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1578) CTRC852_03875 in NC_021888


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  213 bits (794),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1579) JCM7686_3087 in NC_022041


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 160/377 (43%), Positives = 244/377 (65%), Gaps = 5/377 (1%)

Query  58   GEVIALQARFAAILPEGPSEGLHIGARAELLFAPRLRP-GPDWVGRIIDPLGQPLDGRPL  116
            +EV+++++  A + P  ++ GLH G +   L   +  P G   +GR+ID +G+PLDGR L
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  117  EQGGaalryrappppaasrkrLGERLDTGLAVFDTLLPIVKGQRLGLFAGSGVGKSTLLS  176
             +         PPP+   +  + + L TG+  +D++     GQR+G+F+++GVGKSTLL+
Sbjct  115  PEVCWKDYDAMPPPAMVRQP-ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  177  ALAKGVSADVVVIALIGERGRELREFVEEVLGPEGMARAVVVAATSDQSPMMRRRCAWAG  236
             L ++  AD  V+ LIGERGRE+REF++  L+ E   R V+V ATSD++++ R R    +
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  237  MTVAEYFRDQGAHVLFLADSITRFAEAHREIALAGGESPSYRGFPPSVSNLIMALAERSG  296
             T+AE+FRD+G +V++LADS+TR+A A REIALA+GE++    +PP+V + +  L ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  297  PGPAGAGDITALFSVLVAGSDMEEPIADILRGVLDGHIVLDRAIAERGRFPAIDVLRSVS  356
             G    G ITA+++VLV G DM+EP+AD +R++LDGHIVL R +AERG++PAIDVL ++S
Sbjct  294  MG--EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  357  RSLPQAASEAENSLIARARAMLGSYAESELMIRAGLYAAGSDQMLDEAVRLYPALDNFVT  416
            R +P  +S+ +  L A  R  L+ Y E EL+IR G Y  G D   D A+  YP +  F+ 
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLR  411

Query  417  LKAENTAESFTLLAEAL  433
               ++   +  LL E L
Sbjct  412  QSKDEVCGP-ELLIEKL  427

1580) SOTOND1_00764 in NC_020967


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1581) E11023_03780 in NC_017431


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPAVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1582) E150_03815 in NC_017439


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPAVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1583) BOUR_00766 in NC_020971


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPAVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1584) SOTONE8_00768 in NC_020942


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPAVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1585) fliI in NC_017952


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPAVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1586) fliI in NC_017951


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1587) fliI in NC_017953


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1588) fliI in NC_020511


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPAVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1589) fliI in NC_020512


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPAVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1590) CTRC342_03855 in NC_021890


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1591) fliI in NC_017441


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPAVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1592) SOTONE4_00761 in NC_020969


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPAVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1593) SOTONF3_00762 in NC_020964


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1594) O170_03970 in NC_022106


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1595) O173_03975 in NC_022107


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1596) O175_03980 in NC_022108


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPAVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1597) O179_03975 in NC_022110


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1598) O169_03985 in NC_022117


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1599) O172_03965 in NC_022118


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1600) O176_03975 in NC_022119


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGPQLPKTNlsplfssppspMSRTPIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + PP++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGAHVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G +V++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSPIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +    +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1601) Rsph17025_1644 in NC_009428


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  212 bits (787),  Expect = 5e-56, Method: Compositional matrix adjust.
 Identities = 162/386 (42%), Positives = 246/386 (64%), Gaps = 13/386 (3%)

Query  45   GALCRVATEDGSEVQGEVIGFAKGSNLLFLDHMRAPVIAGARVRLVPGGQMAAVGPELLG  104
            G LC +   +     +EV+G+  +  LL      A +  G +V  +   +  +VG  LLG
Sbjct  43   GELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  105  RVIDAEGAPLDGLSPPD-CSAEWP-LAGRTMNPLARTPVSRPLDVGVRAINAALTVGQGQ  162
            RVID+ G PLDG   P+ C   W    +    ++ R P+++PL  G+RAI++  T G+GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  163  RIGIVAGSGVGKSVLIEMMTRYTAADVIVVGLIGERAREVGAFAASVMQGEAARKLCMVA  222
            R+GI +++GVGKS L+ M+     AD  V+ LIGER+REV  F    + +E +RK C++ 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTL-SEETRKRCVIV  215

Query  223  VPA-DRSPllrlraarraTAIAEHFRAQGKQVLLIMDSLTRVAHAQREVGLALGEQPTAK  281
            V++ DR++L R+RA   AT+IAE FR +GK+V+L+ DSLTR A+A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  282  GYPPSVVSMIPGLIERTGPGLPGEGAITAIYTVLADGDDTTNDPVVDTARAILDGHFVLS  341
             YPP+V S +P L+ERTG G    G+ITA+YTVL +GDD  N+P+ D  R++LDGH+VLS
Sbjct  276  EYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDD-MNEPLADEVRSLLDGHIVLS  332

Query  342  RRQTQMGLYPAIDIPHSVSRTMNDVVDERHRKAAARLRQLISLYTDNRDLMLMGGYAPGQ  401
            RR ++ G YPAID+  ++SR    V  + HR+ AA LR+ ++LY +   L+ +G Y  G 
Sbjct  333  RRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGV  392

Query  402  DADLDQAVQLWPKIRALIGQGPHEPS  427
            D+D D+A++  P I +++ Q+ +E  
Sbjct  393  DTDTDKAIDTYPDICTFLRQSKDEVC  418

1602) fliI in NC_004061


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  211 bits (784),  Expect = 1e-55, Method: Compositional matrix adjust.
 Identities = 166/371 (45%), Positives = 249/371 (68%), Gaps = 9/371 (2%)

Query  69   AEVVGFKKEKTLLFSLEETYGVFPGTRVFLKCFKNTYSITGKIPLSTELLGRVLDSKGRP  128
            AEVVG++  K+LL ++  T G+  G +V       +     ++P++  LLGRV+D+ GRP
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVM------ALRRRHQVPVGEALLGRVIDGFGRP  108

Query  129  LDGRSQLNPKFFTFLKSNVVNPLNRKPITEVLDTGIRAINALITVGRGQRigifsssglg  188
            LDGR +L         +    ++ R+PIT+ L TGIRAI+++ T G GQR+GIFS++G+G
Sbjct  109  LDGR-ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVG  167

Query  189  ksillgMMAKYTKADVVIIGLIGERGREVKDFIENILGSNGLSRSVVIAAPADVSPLLQI  248
            KS LL+M+ +   AD  ++ LIGERGREV++FI+  L+ +   R V++ A +D ++L ++
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  249  EAASYATSIAEYFRKKNKHVLLIMDSLTRYAMAQRAVSLSLGELPVSKGYPSSVFSKIPI  308
             A   AT+IAE+FR + K+V+L+ DSLTRYA A R ++L+ GE +VS  YP++VFS +P 
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  309  LVERTGNTDNYGSITSFYTVLTESEEDPQDPIAHICRSILDGHIVLSRHYAELGHYPAID  368
            L+ERTG  ++ GSIT+FYTVL E+ +D ++P+A+  RS+LDGHIVLSR+ AE GHYPAID
Sbjct  288  LLERTGMGEK-GSITAFYTVLVEG-DDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  369  IENSISRVMPNIISKKQYSQACYFKKLIASYQRNRDLINIGAYLKGTDSTLDHAIKIWPI  428
            +  ++SRV P + S  +   A  +++ +A YQ    LI IG Y +G D+  D AI   P 
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  429  LERFLQQKQSE  439
            +  FL+Q + E
Sbjct  406  ICTFLRQSKDE  416

1603) fliI in NC_014774


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  211 bits (785),  Expect = 8e-56, Method: Compositional matrix adjust.
 Identities = 145/323 (45%), Positives = 223/323 (70%), Gaps = 5/323 (1%)

Query  103  GRVLNALGKPIDGDFSLKTGHFSMDIIGKIPSVMNRQRVEKGFKTGIRVIDIFTPLCYGQ  162
            GRV++++G+P+DG   L       D  +  P+ M RQ + + + TGIR ID  +    GQ
Sbjct  99   GRVIDGFGRPLDGR-ELPEVCW-KDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  163  RIGIFAGSGIGKSTLLSMFAKSDCFDKVVISLVGERGREVREFIEDYLGDNLKKSVVVVA  222
            R+GIF+++G+GKSTLL+M+ ++   D  V+ L+GERGREVREFI+  L+++ +K  V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  223  TSDESPILRKMAPL-TAFTIAEYFCSKGDNVLLILDSITRFAHAIREISMNSGELPVTRG  281
            ++ + P L ++ +L  A TIAE+F  +G  V+L+ DS+TR+A+A REI++ +GE +V+  
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  282  YPASVFSELPRLLERAGPREKEKGSITAIISVLVDGDNHNDPIADSVRSILDGHVVLKRS  341
            YP++VFS LPRLLER+G    EKGSITA+ +VLV+GD+ N+P+AD VRS+LDGH+VL R 
Sbjct  277  YPPGVFSALPRLLERTG--MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  342  LAEEGRYPPVDPLASVSRLAYKAWSSDEEKLVASLKNLIHQFEETRDIRLIGGYRPGVDI  401
            LAE G+YP++D LA++SR+     S ++ +L A L+  +  ++E   +  IG Y+ GVD 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  402  NLDKAVRQVPIIYDFLKQSPSDL  424
            + DKA+   P I  FL+QS  ++
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEV  417

1604) fliI in NC_016002


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  211 bits (784),  Expect = 9e-56, Method: Compositional matrix adjust.
 Identities = 168/363 (47%), Positives = 242/363 (67%), Gaps = 6/363 (1%)

Query  56   AQVVGFKREVSYLMPFKKPVGLTTGARVQPAPDAAGLFIGPSWLGRIVNGLGEPLDGLGR  115
            A+VVG++   + L PF    GL  G +V +      + +G + LGR+++G+G PLDG   
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  116  LGGE--HPLAAHPPRVNPLKKRPVDTPLDVGVRAINGLLTLGRGQRVGLFAGSGVGKSVL  173
            L         A PP   ++ ++P+  PL  G+RAI+++ T G GQRVG+F+++GVGKS L
Sbjct  114  LPEVCWKDYDAMPP--PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  174  LGMITRHTEADVVVVGLIgergrevrefveHALGAEGLAKAVLVVAPADESPLMRLKATE  233
            L+M+    +AD  V+ LIGERGREVREF++ +L+ E   + V+VVA +D ++L R++A  
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  234  LTHTIAAHFRDQGRHVLLLVDSLTRYAMAQREVALALGEPPATRGYPPSVFGLLPTLaes  293
            ++ TIA  FRD+G++V+LL DSLTRYA A RE+ALA GE + +  YPP+VF+ LP L   
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRL-LE  290

Query  294  agngegegsmsaIYTVLAEGDDQQDPVVDTARAILDGHIVLSRGLAERGHYPAIDIAASV  353
                   GS++A+YTVL EGDD ++P+ D  R++LDGHIVLSR LAERGHYPAID+ A++
Sbjct  291  RTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  354  SRCMGLVAGASQREAARTLRGLWARYQEVRALIPLGGYVPGADAETDRAVQRMPLIERFL  413
            SR   +V++  +R+ A  LR   A YQEV  LI +G Y  G D++TD+A++  P I  FL
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  414  RQD  416
            RQ 
Sbjct  411  RQS  413

1605) fliI in NC_010505


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  210 bits (782),  Expect = 1e-55, Method: Compositional matrix adjust.
 Identities = 142/323 (44%), Positives = 231/323 (72%), Gaps = 7/323 (2%)

Query  103  DRVVNALGTPIDGKGDLPTGTRampldadpppamaRSRVDSPLRTGVRAMDLFTPLCA-A  161
            +RV++++G P+DG+ +LP   +       PP+ + R  +  PL TG+RA+D  +  C+ +
Sbjct  99   GRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMV-RQPITQPLMTGIRAIDSVAT-CGEG  155

Query  162  QRIGIFAGSGVGKTTLLSMLARCSGFDAVVVALVGERGREVREFLEGPMREsrsravvvv  221
            QR+GIF+++GVGK+TLL+ML   ++ D+ V+ L+GERGREVREF++  + E   +  V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  222  aTGDESPMMRR-QAPKLAFAVAEYFRDQGQSVLLVLDSVTRFAHAAREVALAAGEPPVAR  280
             +  + P + R +A  +A ++AE+FRD+G+ V+L+ DS+TR+A+AARE+ALAAGE +V+ 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  281  GYPPSVFGDLPRLLERAGPGLDGGGAITGLFSVLVDGDDHNDPVADSIRGTLDGHIVLDR  340
             YPP+VF+ LPRLLER+G  ++  G+IT++++VLV+GDD N+P+AD +R+ LDGHIVL R
Sbjct  276  EYPPGVFSALPRLLERTG--MGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  341  AIADQGRYPAIDVLGSISRLADRVWTEQQRQLVRMLKSLIARYEDSRDLRLMGGYHVGAD  400
             +A++G+YPAIDVL+++SR+   V ++++RQL  +L+  +A Y++   L  +G Y+ G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  401  PELDQAVALVPKIYDALRQDPTD  423
             + D+A+   P I   LRQ   +
Sbjct  394  TDTDKAIDTYPDICTFLRQSKDE  416

1606) Adeh_1391 in NC_007760


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  210 bits (780),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 190/400 (48%), Positives = 275/400 (69%), Gaps = 7/400 (1%)

Query  23   GTVVRAAGLLVEALLPQVPVGTACEIHARDGAVVLAEVIGFQGGTARLMPLSGIQGVAEG  82
            G +   ++ L++A LP V +G  C I + +    LAEV+G++G+ A L P+++  G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  83   CVVVPRASADRIPVDEALLGRVVDASLRPVDGGPVPILRQRTALHAAPPPALSRRRVERP  142
              V++    +++PV+EALLGRV+D+  RP+DG  +P +  +   +A PPPA+ R+ + +P
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-WKDYDAMPPPAMVRQPITQP  138

Query  143  VPLGIRAVDACLTVGEGQRVAVMAGPGVGKSVLLGMLARSATADvvvvglvgergrevre  202
            +  GIRA+D+  T GEGQRV++ ++PGVGKS LL+ML  ++ AD  V+ L+GERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  203  fverDLGPGL-ARAVVVVATSDASPLERLRaamaatavaEWFrgrgrrvlllvdslsrvA  261
            F++  L+     R V+VVATSD ++LER+RA   AT++AE FR+ G+RV+LL DSL+R A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  262  QAQREIGLAAGEPPTTRGYPPSAFAILPRLVERAGNDAGPGSITAFYTVLAEGDDHAGDP  321
            +A REI+LAAGE + +  YPP+ F+ LPRL+ER+G  +  GSITAFYTVL EGDD   +P
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDD-MNEP  316

Query  322  IADAARATLDGHLVLSRRLAESGHFPAIDVLASVSRVMNDIVPPEHRALAREAREVLSAH  381
            +AD  R+ LDGH+VLSRRLAE GH+PAIDVLA++SRV   + + EHR LA   R  L+  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  REAADLVEVGAYAAGSNPRVDRALRCIEPLRAFLRQDPAE  421
            +E   L+ +G Y  G +   D+A+     + +FLRQ   E
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1607) TC_0090 in NC_002620


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  210 bits (781),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 161/391 (42%), Positives = 256/391 (66%), Gaps = 8/391 (2%)

Query  40   LGELCQISLPRSSPILAEVIGIHNQTTLLLALTPIYSLSLGAEVVPLRRPASLPLSHHLL  99
            +GELC I   +++  LAEV+GI+   +LL ++T+  +L  G +V++LRR   +P+++ LL
Sbjct  42   MGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  100  GRVIDGFGNPLDGNpplpkshlsplfspppspmsRTPIQEIFPTGIRAIDALLTIGEGQR  159
            GRVIDGFG PLDG              PPP+ + R PI + + TGIRAID++ T GEGQR
Sbjct  99   GRVIDGFGRPLDGRELPEVCWKDYDAMPPPAMV-RQPITQPLMTGIRAIDSVATCGEGQR  157

Query  160  VGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRDYVNQHKEGLAAQRTIIVVS  219
            VGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR++++      + +R +IVV+
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  220  TAHETAASKVIAGRAAITIAEYFRDQGARVLFIMDSLSRWIESLQEVALARGETLSTHHY  279
            T++  A  +V A   A TIAE+FRD+G RV+++ DSL+R   + +E+ALA GET  + +Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  280  AASVFHHVSEFLERAGNNDKGSITSFYAMLHYANH-PDIFNDYVKSLLDGHFFLSP--VE  336
            +++VF  ++ +LER+G  +KGSIT+FY++L  +++  + + D V+SLLDGH+ LS    E
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  337  KSFFSPPINLLTSLSRSACQLALPHHYAAAQELLSLLKAYHEAIDIIQLGAYVSGQDAKL  396
            ++ + P+I++L++LSR    ++  +H   A  L   L  Y+E   +I++G Y  G D+  
Sbjct  338  RGHY-PAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDT  396

Query  397  DRAIRLLPSLREFLSQPLSNYSDIHDTIEQL  427
            D+AI   P +  FL Q+  +  + +  IE+L
Sbjct  397  DKAIDTYPDICTFLRQSKDEVCGPELLIEKL  427

1608) fliI in NC_021172


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  209 bits (779),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 156/370 (43%), Positives = 244/370 (66%), Gaps = 5/370 (1%)

Query  63   GSVLAEVASIEAQVINVTPFIADHRIELGARVTALSGQLTLSPHGSWLGRTLNALGHPID  122
            G  LAEV +I++    ++PF +   ++ G +V AL  +  ++   + LGR ++++G+P+D
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  123  DQGPLTVGDRAVPIQGSPPAAMRRSRLGDPLTTGVKAIDLFTPICAGQRIGIFAGSGVGK  182
            ++    V  +    ++ PP+AM R  + +PL TG++AID  +    GQR+GIF+++GVGK
Sbjct  111  GRELPEVCWKD--YDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGK  168

Query  183  STLLAMLSRAPSSDVTVLALVGERSREVRDFLDDTLsasrdrvvsvvatsdESPMMRRLA  242
            STLLAML  AP +D  VL L+GER+REVR+F+D TLS    +   +V ++ + P + R+ 
Sbjct  169  STLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR  228

Query  243  P-SAAMCIAEYYRDQGKNVLLIIDSLTRYAHAMRELALASDEPPVARGYPPSVFSALPRL  301
            +   A  IAE++RD+GK V+L+ DSLTRYA+A RE+ALA++E +V+  YPP+VFSALPRL
Sbjct  229  ALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRL  288

Query  302  LeragtgeegagtitaVLSVLVDGDDHNDPIADAARGILDGHIVLDRSIASQGRLPAVDP  361
            L    TG    G+ITA  +VLV+GDD N+P+AD  R++LDGHIVL R +A +G+ PA+D 
Sbjct  289  L--ERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDV  346

Query  362  LVSLSRLAPKIRTKKQAQYTTQLIESISRFEDTRDLRAIGGYRPGSDITLDRALDIVPRL  421
            L +LSR+ P + +  + Q ++ L   ++ +++   L  IG Y+ G D   D+A+D  P +
Sbjct  347  LATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDI  406

Query  422  YEALKQDLNE  431
               L+Q  +E
Sbjct  407  CTFLRQSKDE  416

1609) Sden_0056 in NC_007954


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  209 bits (776),  Expect = 4e-55, Method: Compositional matrix adjust.
 Identities = 153/379 (41%), Positives = 252/379 (67%), Gaps = 13/379 (3%)

Query  14   YHYGSVLRSEGLMLVASLPQAFVGELCTIRRADETLPDISAEVISISETQVKLMPFQSAS  73
             + G +    + +L A LP  F+GELC I+ ++E      AEV++I+ ++  L PF S++
Sbjct  20   CRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL-----AEVVGINGSKALLSPFTSTA  74

Query  74   GISFGDKLIGSGTSIRLPMGSGMLGHVVDAFGQPLDEQELGVVQTQC--VFLASHINPLT  131
            G+  G+++++     ++P+G ++LG+V+D+FG+PLD +EL  V   C   + A    ++ 
Sbjct  75   GLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEV---CWKDYDAMPPPAMV  131

Query  132  RAAIDEPLTTRIKALDSFIPIGKGQRVGILAGSGVGKSTLLAMMSDSCAQQNAVIVIVLv  191
            R +I +PL T I+A+DS    G GQRVGI++++GVGKSTLLAM+ +  A +    V+VL+
Sbjct  132  RQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN--APDADSNVLVLI  189

Query  192  gergreveeFVNGKMFKRLRSRAVLVAATAEEMPVTRVLAVKYGLALAESLSAEGKEVIF  251
            GERGREV EF++  +    R R V+V AT++  ++ RV A+  + ++AE +  +GK V++
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  252  VVDSLTRVAMAQREIGLAIGEPPTAKGYTPSVFSLLQRIVERCGAFRHRASITALFSVLV  311
            + DSLTR A A REI+LA GE + +  Y P+VFS L R++ER  +  +++SITA+++VLV
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER-TGMGEKGSITAFYTVLV  308

Query  312  ETDDFDDPIVDTLRAVLDGHIVLDRALAEQGHFPAIDVLRSVSRLTTNLFDAKKIKLSRA  371
            E DD ++P+ D +R++LDGHIVL R LAE+GH+PAIDVL ++SR+   +      +L+  
Sbjct  309  EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAI  368

Query  372  GRILLSEYKQKKMMIDLAD  390
             R  L+ Y++  ++I +++
Sbjct  369  LRRRLALYQEVELLIRIGE  387

1610) fliI in NC_010287


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1611) L1115_00758 in NC_020929


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1612) L1224_00758 in NC_020973


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1613) L1440_00761 in NC_020937


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1614) L225667R_00759 in NC_020930


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1615) CTLFINAL_00455 in NC_021052


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1616) CTLINITIAL_00455 in NC_021050


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1617) L2B795_00757 in NC_020938


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1618) L2B8200_00757 in NC_020945


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1619) L2BAMS1_00757 in NC_020933


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1620) L2BAMS2_00757 in NC_020934


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1621) L2BAMS3_00757 in NC_020977


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1622) L2BAMS4_00757 in NC_020978


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1623) L2BAMS5_00758 in NC_020936


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1624) L2BCAN1_00759 in NC_020935


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1625) L2BCAN2_00758 in NC_020932


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1626) L2BCV204_00757 in NC_020976


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1627) fliI in NC_010280


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1628) L2BUCH2_00757 in NC_020931


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1629) L3404_00757 in NC_020974


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1630) CTRC943_03785 in NC_021896


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1631) CTRC966_03790 in NC_021898


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1632) CTRC971_03795 in NC_021899


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1633) CTRC55_03795 in NC_021893


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1634) CTRC3_03825 in NC_021897


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1635) CTRC46_03795 in NC_021887


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1636) L2BLST_00757 in NC_020975


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1637) L11322_00758 in NC_020972


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 273/416 (66%), Gaps = 8/416 (1%)

Query  21   GILSRISGSLLEAQGLSACLGELCQISLSRSDPILAEVIGIHNRTTLLLALTPIYYLAIG  80
            G +  +S++LL+A   +  +GELC I   +++  LAEV+GI+   +LL ++T+   L  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCI---KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   AEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLsplfsspsspmsrtpIQEV  140
             +V++LRR   +P+++ LLGRV+DGFG PLDG  +LP        + P+++M R PI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDG-RELPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD  200
            + TGIRAID++ T GEGQRVGIFS PG GKS+LL+ + ++++   NV+ LIGERGREVR+
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSRWI  260
            +++      + +R VI+ +T+   A  +V A   A TIAE+FRD+G RV++  DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  ESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKGSITSFYAILHYANH-PDIFT  319
             + +E+A+A GET  + +Y+++VF  ++ +LER+G  +KGSIT+FY++L  +++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYVKSLLDGHFFLSPQ--EKSFSSPPINVLTSLSRSSRQLALPHHYAAAQELLSLLKAYH  377
            D V+SLLDGH+ LS +  E++   P+I+VL++LSR    ++  +H   A  L   L  Y+
Sbjct  319  DEVRSLLDGHIVLSRRLAERG-HYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQ  377

Query  378  EAIDIIQLGAYVSGQDAHLDRAIRLLPSVKQFLSQPYSHYSAIHETIEQLCQLLKH  433
            E   +I++G Y  G D++ D+AI   P +  FL Q+  +  + +  IE+L Q+L +
Sbjct  378  EVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE  433

1638) Sala_2933 in NC_008048


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  207 bits (771),  Expect = 9e-55, Method: Compositional matrix adjust.
 Identities = 157/363 (44%), Positives = 243/363 (67%), Gaps = 5/363 (1%)

Query  62   GEVVGFRGHRSLVLPFDTNKPLVTGAPVEPHGASSMVPVGKALLGRIMDAQGNPLDGRPA  121
            +EVVG+ G ++L+ PF +   L  G  V +      VPVG ALLGR++D+ G PLDGR  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  122  IKSQFQWP-LAGRKVNPLRRGRVTRALNMGVRAINGLLTVGEGQRVAIIAGSGVGKSVLM  180
              ++  W    +    ++ R  +T++L  G+RAI+++ T GEGQRV+I++++GVGKS L+
Sbjct  115  --PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLL  172

Query  181  GQMIAGTECDVIVVGLIGERSREVSDFVETKLPPDVRKKSVVVAVPADHPPllrlraamr  240
            + +  + + D  V+ LIGER+REV +F++  L+ + RK+ V+V   +D+P+L R+RA   
Sbjct  173  AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV  232

Query  241  ataiaeafraEGKKVLLLIDSLTRVAHAQREIGLTLGEPPTMKGYPPSVFALIPSLCERA  300
            AT+IAE FR +GK+V+LL DSLTR A+A REI+L+ GE +    YPP+VF+ +P L ER+
Sbjct  233  ATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERT  292

Query  301  GIDKATGGSVTALYTVLADGGDIDDPVVDSARAIVDGHIILSRQLAEQGVYPAIDVARSL  360
            G++    GS+TA+YTVL +G+D+++P+ D  R+++DGHI+LSR+LAE+G YPAIDV  +L
Sbjct  293  GMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATL  350

Query  361  SRTMadsvdadhaaaaaRFRQLWSLYEENRDLMLMGAYVAGADPILDEAIARRADQLAFV  420
            SR  +     +H   AA +R+  +LY+E   L+ +G Y  G D   D AI   +D  +F+
Sbjct  351  SRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFL  410

Query  421  SQP  423
             Q+
Sbjct  411  RQS  413

1639) Hden_3112 in NC_014313


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  205 bits (761),  Expect = 6e-54, Method: Compositional matrix adjust.
 Identities = 158/372 (43%), Positives = 251/372 (68%), Gaps = 7/372 (1%)

Query  63   GSVLAEVASIEAQVINVTPFIADHRIELGASVTALSGQLTLSPHESWLGRTLNALGHPID  122
            G  LAEV +I++    ++PF +   ++ G  V AL  +  ++  E+ LGR ++++G+P+D
Sbjct  51   GEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD  110

Query  123  DQGPLIAGDRAVPIQGSPPAAMRRSRLGEQLKTGVKAIDLFTPICA-GQRIGIFAGSGVG  181
            ++   ++       ++ PP+AM R  + + L TG++AID   + C+ GQR+GIF+++GVG
Sbjct  111  GRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDS-VATCGEGQRVGIFSAPGVG  167

Query  182  KSTLLAMLSRAPSSDVTVLALVGERSREVRDFLDDTLsasrdrvvsvvatsdESpmmrrl  241
            KSTLLAML  AP +D  VL L+GER+REVR+F+D TLS    +   +V ++ + P + R+
Sbjct  168  KSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV  227

Query  242  apa-aamCIAEYYRDQGKNVLLIIDSLTRYAHAMRELALASDEPPVARGYPPSVFSALPR  300
             +   A  IAE++RD+GK V+L+ DSLTRYA+A RE+ALA++E +V+  YPP+VFSALPR
Sbjct  228  RALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPR  287

Query  301  LLeragtgeegagtitaVLSVLVDGDDHNDPIADAARGILDGHIVLERSIASQGRLPAVD  360
            LLER+G GE G+ T     +VLV+GDD N+P+AD  R++LDGHIVL R +A +G+ PA+D
Sbjct  288  LLERTGMGEKGSITA--FYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAID  345

Query  361  PLASLSRLAPKIRTKQQSQFTTQLIESISRFEDTRDLRAIGGYRPGSDLTLDRALETVPR  420
             LA+LSR+ P + + ++ Q+++ L   ++ +++   L  IG Y+ G D   D+A++T P 
Sbjct  346  VLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPD  405

Query  421  VYDALKQDLNET  432
            +   L+Q  +E 
Sbjct  406  ICTFLRQSKDEV  417

1640) fliI in NC_010842


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  204 bits (758),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 160/350 (46%), Positives = 244/350 (70%), Gaps = 9/350 (2%)

Query  99   RQITLNAGPELLGRVLNGLGKPIDNKGI--LITKEERASEPRFLNPLDRPPITDILETGV  156
            R+  +  G  LLGRV++G+G+P+D + +  +  K+  A  P    ++ R PIT+ L TG+
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP---PAMVRQPITQPLMTGI  143

Query  157  RAIDGMLTVGRGQRIGIFsgsgvgkssllgMIARYTNADVNVVALIGERGREVNEFLHVE  216
            RAID++ T G GQR+GIFS++GVGKS+LL+M+    +AD NV+ LIGERGREV EF++  
Sbjct  144  RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFT  203

Query  217  LGKEALARSVVFVATSDSSKMEQVSCANLACSAAEYFREKGMSVNLYMDSLTRYAEALRE  276
            L+ E+  R V+ VATSD + +E+V    +A + AE+FR++G  V L  DSLTRYA A RE
Sbjct  204  LSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAARE  263

Query  277  --LSIGEPVVTKGYASSVFSKMAKLVERAGTSHNGGSITGFYTVLTdaeddmddivadKV  334
              L+ GE  V+  Y+++VFS +++L+ER+G +++ GSIT+FYTVL    DDM++ +AD V
Sbjct  264  IALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLV-EGDDMNEPLADEV  321

Query  335  RGFIDGHIVLTRKLAEQSHYPAIDVPASLSRLMQKIVNEDHYMRASIVRELISKYKNSED  394
            R+++DGHIVL+R+LAE++HYPAIDV A+LSR+   + +++H   A+I+R  ++ Y++ E 
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  395  IILLNAYVRGADEKIDMAIDKKSQIDDYLRQRIEEKSSYNEAIKRLEQIL  444
            +I +  Y RG D   D AID  ++I  +LRQ  +E  + +  I +L+QIL
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1641) fliI in NC_010602


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  204 bits (758),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 160/350 (46%), Positives = 244/350 (70%), Gaps = 9/350 (2%)

Query  99   RQITLNAGPELLGRVLNGLGKPIDNKGI--LITKEERASEPRFLNPLDRPPITDILETGV  156
            R+  +  G  LLGRV++G+G+P+D + +  +  K+  A  P    ++ R PIT+ L TG+
Sbjct  87   RRHQVPVGEALLGRVIDGFGRPLDGRELPEVCWKDYDAMPP---PAMVRQPITQPLMTGI  143

Query  157  RAIDGMLTVGRGQRIGIFsgsgvgkssllgMIARYTNADVNVVALIGERGREVNEFLHVE  216
            RAID++ T G GQR+GIFS++GVGKS+LL+M+    +AD NV+ LIGERGREV EF++  
Sbjct  144  RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFT  203

Query  217  LGKEALARSVVFVATSDSSKMEQVSCANLACSAAEYFREKGMSVNLYMDSLTRYAEALRE  276
            L+ E+  R V+ VATSD + +E+V    +A + AE+FR++G  V L  DSLTRYA A RE
Sbjct  204  LSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAARE  263

Query  277  --LSIGEPVVTKGYASSVFSKMAKLVERAGTSHNGGSITGFYTVLTdaeddmddivadKV  334
              L+ GE  V+  Y+++VFS +++L+ER+G +++ GSIT+FYTVL    DDM++ +AD V
Sbjct  264  IALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITAFYTVLV-EGDDMNEPLADEV  321

Query  335  RGFIDGHIVLTRKLAEQSHYPAIDVPASLSRLMQKIVNEDHYMRASIVRELISKYKNSED  394
            R+++DGHIVL+R+LAE++HYPAIDV A+LSR+   + +++H   A+I+R  ++ Y++ E 
Sbjct  322  RSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVEL  381

Query  395  IILLNAYVRGADEKIDMAIDKKSQIDDYLRQRIEEKSSYNEAIKRLEQIL  444
            +I +  Y RG D   D AID  ++I  +LRQ  +E  + +  I +L+QIL
Sbjct  382  LIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQIL  431

1642) A2cp1_2562 in NC_011891


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  203 bits (755),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 190/400 (48%), Positives = 274/400 (69%), Gaps = 7/400 (1%)

Query  23   GTVVRAAGLLVEALLPQVPVGTACEIHAQDGAVVLAEVIGFQGGTARLMPLSGIQGVAEG  82
            G +   ++ L++A LP V +G  C I + +    LAEV+G++G+ A L P+++  G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  83   CAVVPRASADRIAVGEALLGRVVDASLRPVDGGAVPMLRQRTALHASPPPALSRRRVERA  142
              V++    ++++VGEALLGRV+D+  RP+DG  +P +  +   +A PPPA+ R+ + ++
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-WKDYDAMPPPAMVRQPITQP  138

Query  143  VPLGIRAIDACLTVGEGQRIAVMAGPGVGKSVLLGMLARSATADVVVVGLIgergrevre  202
            +  GIRAID+  T GEGQR+++ ++PGVGKS LL+ML  ++ AD  V+ LIGERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  203  fverDLGPGL-ARAVVVVATSDASPLERLRaamaataaaEWFrgrgrrvlllvdslsrvA  261
            F++  L+     R V+VVATSD ++LER+RA   AT+ AE FR+ G+RV+LL DSL+R A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  262  QAQREIGLAAGEPPTTRGYPPSAFAILPRLVERAGNDAGPGSITAFYTVLAEGDDHAGDP  321
            +A REI+LAAGE + +  YPP+ F+ LPRL+ER+G  +  GSITAFYTVL EGDD   +P
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDD-MNEP  316

Query  322  IADAARATLDGHLVLSRRLAESGHFPAIDVLASVSRVMNDIVPaehralareareVLSAH  381
            +AD  R+ LDGH+VLSRRLAE GH+PAIDVLA++SRV   + + EHR LA   R  L+  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  REAADLVEVGAYAAGSNPRVDRALRCIEPLRAFLRQDPAE  421
            +E   L+ +G Y  G +   D+A+     + +FLRQ   E
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1643) AnaeK_2466 in NC_011145


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  203 bits (754),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 189/400 (48%), Positives = 274/400 (69%), Gaps = 7/400 (1%)

Query  23   GTVVRAAGLLVEALLPQVPVGTACEIHAQDGAVVLAEVIGFQGGTARLMPLSGIQGVAEG  82
            G +   ++ L++A LP V +G  C I + +    LAEV+G++G+ A L P+++  G+  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCG  79

Query  83   CAVVPRASADRIAVGEALLGRVVDASLRPVDGGAVPMLRQRTALHASPPPALSRRRVERA  142
              V++    ++++VGEALLGRV+D+  RP+DG  +P +  +   +A PPPA+ R+ + ++
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPEVC-WKDYDAMPPPAMVRQPITQP  138

Query  143  VPLGIRAVDACLTVGEGQRIAVMAGPGVGKSVLLGMLARSATADVVVVGLIgergrevre  202
            +  GIRA+D+  T GEGQR+++ ++PGVGKS LL+ML  ++ AD  V+ LIGERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  203  fverDLGPGL-ARAVVVVATSDASPLERLRaamaataaaEWFrgrgrrvlllvdslsrvA  261
            F++  L+     R V+VVATSD ++LER+RA   AT+ AE FR+ G+RV+LL DSL+R A
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  262  QAQREIGLAAGEPPTTRGYPPSAFAILPRLVERAGNDAGPGSITAFYTVLAEGDDHAGDP  321
            +A REI+LAAGE + +  YPP+ F+ LPRL+ER+G  +  GSITAFYTVL EGDD   +P
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM-GEKGSITAFYTVLVEGDD-MNEP  316

Query  322  IADAARATLDGHLVLSRRLAESGHFPAIDVLASVSRVMNDIVPaehralareareVLSAH  381
            +AD  R+ LDGH+VLSRRLAE GH+PAIDVLA++SRV   + + EHR LA   R  L+  
Sbjct  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALY  376

Query  382  REAADLVEVGAYAAGSNPRVDRALRCIEPLRAFLRQDPAE  421
            +E   L+ +G Y  G +   D+A+     + +FLRQ   E
Sbjct  377  QEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1644) Rsph17025_2599 in NC_009428


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  203 bits (755),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 146/349 (42%), Positives = 231/349 (67%), Gaps = 4/349 (1%)

Query  74   AAIEGLSIGDQV-ELVGSAEIAPDDSWIGRIVDPLGRPLDGRPLFrgpiarplrapappa  132
            ++  GL  G+QV  L    +++ +++ +GR++D +GRPLDGR L      +   A +PPA
Sbjct  71   TSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL-PEVCWKDYDAMPPPA  129

Query  133  arrrslgprlpTGVAVFDTMLPLVQGQRTGLFAGSGVGKSSLLAKFARGVGADVVVIGLI  192
              R+++   L TG+  +D++    +GQR G+F+++GVGKS+LLA +  + +AD  V+ LI
Sbjct  130  MVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLI  189

Query  193  GERGRELRDFTERVLGARGMARSVVVTATSDQSPLMRRRCGWAAMAVAEHFRDQGLHVLL  252
            GERGRE+R+F +  L+     R V+V ATSD+++L R R    A ++AE FRD+G +V+L
Sbjct  190  GERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL  249

Query  253  LADSITRFAEAHREVALAGGEEASMRGFPPSTAHTIMSLAERAGPGAEGTGDITAVFSVL  312
            LADS+TR+A A RE+ALA+GE A    +PP+   ++  L ER+G G  G+  ITA ++VL
Sbjct  250  LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGS--ITAFYTVL  307

Query  313  VAGSDMEEPVADILRGVLDGHVVMDRRIAERGRFPAIDLLRSVSRSLPDAASDPENDLIV  372
            V G DM+EP+AD +R++LDGH+V+ RR+AERG++PAID+L ++SR +P  +S+ + +L  
Sbjct  308  VEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAA  367

Query  373  EARRLLGAWDRAEMMIQAGLYAKGSDPQVDAAIRVWPALDGFLAEDAPD  421
              RR L+  +  E++I+ G Y +G D + D AI   P +  FL +   +
Sbjct  368  ILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDE  416

1645) fliI in NC_011365


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  201 bits (746),  Expect = 1e-52, Method: Compositional matrix adjust.
 Identities = 174/395 (45%), Positives = 256/395 (65%), Gaps = 17/395 (4%)

Query  56   AEIVAFRGDTAIAMPYGSLEGIGSGCRAMFQLFDPEQRRRRAGGTLVVNDAWQGRVIDPM  115
            AE+V++ G  A+  P+ S  G+  G + M        RRR+    + V +A  GRVID  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVM------ALRRRHQ---VPVGEALLGRVIDGF  105

Query  116  GRPIDGKGPLPPDGVPQKlhapppeaalrarlgprIDLGVRVLNLFATCREGQRLGLFAG  175
            GRP+DG+    P+   +  +A PP A +R  +   +  G+R ++  ATC EGQR+G+F++
Sbjct  106  GRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSA  163

Query  176  SGVGKSTLMGMLARNTDCDVAVIALvgergrevrefveDDLGPEGLAKSVVVVATSDTSP  235
            +GVGKSTL++ML    D D  V+ L+GERGREVREF++  L+ E   + V+VVATSD ++
Sbjct  164  PGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPA  223

Query  236  LMRREaayaataaaEHFRDQGKSVLLLMDSVTRFCQALREIGLSSGEPPATRGYPPSVFA  295
            L R  A + AT+ AE FRD+GK V+LL DS+TR+ +A REI+L++GE + +  YPP+VF+
Sbjct  224  LERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFS  283

Query  296  ELPRLLERAGPGLPGPDGKAGQITAMFSVLVEGDDHNEPVADAVRGILDGHVVMERRIAE  355
             LPRLLER+G       G  G ITA ++VLVEGDD NEP+AD VR++LDGH+V+ RR+AE
Sbjct  284  ALPRLLERTGM------GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  356  SGRYPAINVLRSLSRTVPGCNSAEENALTRDARADLSTWEEMQDMVRLGAYRAGNDPKVD  415
             G+YPAI+VL +LSR  P   S E+  L+   R  L+  +E++ ++R+G Y+ G D   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  416  QAIRIAPAIEEILRQGRGEKATIAESFDALRAALS  450
            +AI   P I  +LRQ+++E       ++ L+  L+
Sbjct  398  KAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1646) fliI in NC_009668


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  201 bits (748),  Expect = 6e-53, Method: Compositional matrix adjust.
 Identities = 159/385 (42%), Positives = 251/385 (66%), Gaps = 17/385 (4%)

Query  50   LGDAVAIHAQGGQSLAEIIRVADTQVLVKPFDDRIIPSLGAAVFEEGPMRIRPAL----E  105
            +G+   I +  G+ LAE++ + +++ L+ PF        G  V    ++R R  +     
Sbjct  42   MGELCCIKP--GEELAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGEA  96

Query  106  WRGRVINALGEAVDGKGALQPGTRPMASESLAPAALRRGRVDRGLRTGVNVIDIFTPLCF  165
              GRVI+++G ++DG+    P       ++++P+A+ R  + + L TG+  ID  +  C 
Sbjct  97   LLGRVIDGFGRPLDGRE--LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CG  153

Query  166  -GQRIGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVREMLEETMAGHLDKTIT  224
             GQR+GIF+++GVGKSTLLAM+  A+D D+ VL L GERGREVRE ++ T++ +  K   
Sbjct  154  EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCV  213

Query  225  VVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeePPV  283
            +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +V
Sbjct  214  IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAV  273

Query  284  SRGYPPSVFSQLPRLLERAGPGITEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHIV  343
            S  YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHIV
Sbjct  274  SGEYPPGVFSALPRLLERTGMG---EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIV  330

Query  344  LDRAIAAQGRFPAVDIPGSVSRLAKHNWTPEQRKLVSQLRGMVARFEETRDLRAIGAYQK  403
            L R +A +G++PA+D+ +++SR+     + E+R+L + LR  +A ++E   L  IG YQ+
Sbjct  331  LSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQR  390

Query  404  GHDGLLDQAVDLVPRIYDALQQSPE  428
            G D   D+A+D  P I   L+QS +
Sbjct  391  GVDTDTDKAIDTYPDICTFLRQSKD  415

1647) fliI in NC_009937


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  200 bits (745),  Expect = 1e-52, Method: Compositional matrix adjust.
 Identities = 156/319 (49%), Positives = 229/319 (72%), Gaps = 7/319 (2%)

Query  104  GRVINALGVPLDGEGLLARGEHRMPMDAEPPPAMTRQRIQKGIRTGVRVIDLFTPLC-EG  162
            GRVI+++G PLDG  L      +   DA PPPAM RQ I + + TG+R ID  +  C EG
Sbjct  99   GRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEG  155

Query  163  QRMGIFAGSGVGKSTLLAMLARSAVFDTvvvglvgergrevreflegPLASN-RHRSVVV  221
            QR+GIF+++GVGKSTLLAML  ++  D+ V+ L+GERGREVREF++  L+ + R R V+V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  222  VSTSDESPMMRRLAPQSALAVAEYFRDLGESVLLIIDSVTRYAHAARDVALAAGEPAVAR  281
            V+TSD +++ R  A   A ++AE+FRD G  V+L+ DS+TRYA+AAR++ALAAGE AV+ 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  282  GYAPSVFSTLPKLLERAGPGTEGAGCITAVFSVLVDGDDHNDPVADAIRGTLDGHIVLDR  341
             Y+P+VFS+LP+LLER+G G  G+  ITA ++VLV+GDD N+P+AD +R+ LDGHIVL R
Sbjct  276  EYPPGVFSALPRLLERTGMGEKGS--ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSR  333

Query  342  AIADQGRFPAVNVLGSISRLADHVWTPEERDLVRRLKSMVARFEDTRDLRLMGGYHAGSD  401
             +A++G++PA++VL+++SR+   V + E+R+L   L+  +A +++   L  +G Y+ G D
Sbjct  334  RLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVD  393

Query  402  PELDQAVALVPKIYEALRQ  420
             + D+A+   P I   LRQ
Sbjct  394  TDTDKAIDTYPDICTFLRQ  412

1648) G432_05920 in NC_020561


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  200 bits (743),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 163/368 (45%), Positives = 248/368 (68%), Gaps = 9/368 (2%)

Query  62   AEVVGFRGNRTLMMALDSDAPHITGARVEPDSRGGSVAVGAELLGRVVDALGEPLDG--L  119
            AEVVG+ G+++L+ ++ S A    G +V +  R   V+VG  LLGRV+D++G PLDG  L
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  120  GPIAAAHRWP-LAGRPGNPLNRARVTEPFDMGVRAINALLTAGVGQRIAIAAGSGVGKSV  178
              +     W    + P  ++ R  +T+P+  G+RAI+++ T G GQR++I +++GVGKS 
Sbjct  115  PEVC----WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST  170

Query  179  LMGQMIAGAECDVIVVGLVGERSREVSDFLATKLSGAVRQKSVVVAVPADHPPllrlraa  238
            L++ +  +++ D  V+ L+GER+REV +F+   LS   R++ V+V   +D+P+L R+RA 
Sbjct  171  LLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL  230

Query  239  mrataiaEFFREAGLRVLLLIDSLTRVAHAQREIGLSLGEPPTMKGYPPSALGLIPRLIE  298
              AT+IAEFFR+ G RV+LL DSLTR A+A REI+L+ GE +    YPP+ ++ +PRL+E
Sbjct  231  FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLE  290

Query  299  RAGADARTGGSITAIYtvladgddtddpvvdtaraIVDGHIILSRSLAEQGVFPAIDVGK  358
            R+G + +  GSITA+YTVL +GDD ++P+ D  R+++DGHI+LSR LAE+G +PAIDV  
Sbjct  291  RTGMGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLA  348

Query  359  SLSRVMPDVVEPDHlraaanlrrlwaaYEENRDLILMGAYREGSDPRIDEAVMRQADIRA  418
            +LSRV P V   +H + AA LRR  A Y+E   LI +G Y+ G D   D A+   +DI +
Sbjct  349  TLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICT  408

Query  419  FISQGQKE  426
            F+ Q++ E
Sbjct  409  FLRQSKDE  416

1649) fliI in NC_013118


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  198 bits (736),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 161/386 (42%), Positives = 250/386 (65%), Gaps = 18/386 (4%)

Query  50   LGDTVAIRAGEGAPSLAEIIRVADLQVLVKPFDDRIMPSLGAAVFEEGPLRIRP----AP  105
            +G+   I++GE    LAE++ + + + L+ PF        G  V    +LR R     + 
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGE  95

Query  106  EWRGRVINALGNAIDGKGALKPGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLC  165
               GRVI+++G ++DG+    P       ++++P+A+ R  + + L TG+  ID  +  C
Sbjct  96   ALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-C  152

Query  166  F-GQRIGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTI  224
              GQR+GIF+++GVGKSTLLAM+  A+D D+ VL L GERGREVRE ++ T++ +  K  
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  225  TVVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeepp  283
             +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  284  varGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHI  343
            V+  YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHI
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  344  VLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAIGAYQ  403
            VL R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++E   L  IG YQ
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  404  KGHDGLLDQAVDFVPRIYEALQQSPE  429
            +G D   D+A+D  P I   L+QS +
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKD  415

1650) fliI in NC_010167


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  198 bits (735),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 161/386 (42%), Positives = 250/386 (65%), Gaps = 18/386 (4%)

Query  50   LGDTVAIRAGEGAPSLAEIIRVADLQVLVKPFDDRIMPSLGAAVFEEGPLRIRP----AP  105
            +G+   I++GE    LAE++ + + + L+ PF        G  V    +LR R     + 
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGE  95

Query  106  EWRGRVINALGNAIDGKGALKPGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLC  165
               GRVI+++G ++DG+    P       ++++P+A+ R  + + L TG+  ID  +  C
Sbjct  96   ALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-C  152

Query  166  F-GQRIGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTI  224
              GQR+GIF+++GVGKSTLLAM+  A+D D+ VL L GERGREVRE ++ T++ +  K  
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  225  TVVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeepp  283
             +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  284  varGYPPSVFSQLPRLLERAGPGSAEGGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHI  343
            V+  YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHI
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  344  VLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAIGAYQ  403
            VL R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++E   L  IG YQ
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  404  KGHDGLLDQAVDFVPRIYEALQQSPE  429
            +G D   D+A+D  P I   L+QS +
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKD  415

1651) fliI in NC_009504


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  198 bits (735),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 160/386 (42%), Positives = 250/386 (65%), Gaps = 18/386 (4%)

Query  50   LGDMVAIRAGEGAPSLAEIIRVADLQVLVKPFDDRIMPSLGAAVFEEGPLRIRP----AP  105
            +G++  I++GE    LAE++ + + + L+ PF        G  V    +LR R     + 
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGE  95

Query  106  EWRGRVINALGNAIDGKGALKPGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLC  165
               GRVI+++G ++DG+    P       ++++P+A+ R  + + L TG+  ID  +  C
Sbjct  96   ALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-C  152

Query  166  F-GQRIGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTI  224
              GQR+GIF+++GVGKSTLLAM+  A+D D+ VL L GERGREVRE ++ T++ +  K  
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  225  TVVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeepp  283
             +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  284  varGYTPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHI  343
            V+  Y P+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHI
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  344  VLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAIGAYQ  403
            VL R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++E   L  IG YQ
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  404  KGHDGLLDQAVDFVPRIYEALQQSPE  429
            +G D   D+A+D  P I   L+QS +
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKD  415

1652) fliI in NC_010125


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  198 bits (734),  Expect = 9e-52, Method: Compositional matrix adjust.
 Identities = 171/395 (44%), Positives = 257/395 (66%), Gaps = 17/395 (4%)

Query  56   ADILPFHINTAIIMPYGSLEGIGSGCRAMFQLFDPEQRRRRAGGTLVVNDAWQGRVIDPM  115
            A+++ ++ + A++ P+ S  G+  G + M        RRR+    + V +A  GRVID  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVM------ALRRRHQ---VPVGEALLGRVIDGF  105

Query  116  GRPIDGKGPLPPDGVPQKlhapppeaalrarlgprIDLGVRVLNLFATCREGQRLGLFAG  175
            GRP+DG+    P+   +  +A PP A +R  +   +  G+R ++  ATC EGQR+G+F++
Sbjct  106  GRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSA  163

Query  176  SGVGKSTLMGMLARNTDCDVAVIALvgergrevrefveDDLGPEGLAKSVVVVATSDTSP  235
            +GVGKSTL++ML    D D  V+ L+GERGREVREF++  L+ E   + V+VVATSD ++
Sbjct  164  PGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPA  223

Query  236  LMRREaayaataaaEHFRDQGKSVLLLMDSVTRFCQALREIGLSSGEPPATRGYPPSVFA  295
            L R  A + AT+ AE FRD+GK V+LL DS+TR+ +A REI+L++GE + +  YPP+VF+
Sbjct  224  LERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFS  283

Query  296  ELPRLLERAGPGLPGPDGKAGQITAMFSVLVEGDDHNEPVADAVRGILDGHVVMERRIAE  355
             LPRLLER+G       G  G ITA ++VLVEGDD NEP+AD VR++LDGH+V+ RR+AE
Sbjct  284  ALPRLLERTGM------GEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  356  SGRYPAINVLRSLSRTVPGCNSAEENALTRDARADLSTWEEMQDMVRLGAYRAGNDPKVD  415
             G+YPAI+VL +LSR  P   S E+  L+   R  L+  +E++ ++R+G Y+ G D   D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  416  QAIRIAPAIEEILRQGRGEKATIAESFDALRAALS  450
            +AI   P I  +LRQ+++E       ++ L+  L+
Sbjct  398  KAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1653) fliI in NC_007493


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  197 bits (731),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 163/384 (43%), Positives = 248/384 (65%), Gaps = 13/384 (3%)

Query  45   GALCRVATEDGREVQGEVIGFAQGRNLLFLDQMRAPVIAGARVRLVPGGQMAAVGPALLG  104
            G LC +   +     +EV+G+  ++ LL      A +  G +V  +   +  +VG ALLG
Sbjct  43   GELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  105  RVIDAEGAPLDGLPAPD-CMGEWP-LAGRVMNPLARTAVSRPLDVGVRAINAALTVGQGQ  162
            RVID+ G PLDG   P+ C   W    +    ++ R ++++PL  G+RAI++  T G+GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  163  RIGIVAGSGVGKSVLIEMMTRYTAADVIVVGLIGERAREVGAFAASVMQGEAARKLCMVA  222
            R+GI +++GVGKS L+ M+     AD  V+ LIGER+REV  F    + +E +RK C++ 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTL-SEETRKRCVIV  215

Query  223  VPA-DRSPllrlraarraTAIAEHFRSEGKQVLLIMDSLTRVAHAQREVGLALGEQPTAK  281
            V++ DR++L R+RA   AT+IAE FR +GK+V+L+ DSLTR A+A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  282  GYPPSVVSMIPGLIERTGPGLPGEGAITAIYTVLADGDDTTNDPVVDTARAILDGHFVLS  341
             YPP+V S +P L+ERTG G    G+ITA+YTVL +GDD  N+P+ D  R++LDGH+VLS
Sbjct  276  EYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDD-MNEPLADEVRSLLDGHIVLS  332

Query  342  RRQTQMGLYPAIDIPHSVSRTMNDVVDDRHrraaarlrqlialYSDNRDLMLMGGYAAGQ  401
            RR ++ G YPAID+  ++SR    V  + HR+ AA LR+ +ALY +   L+ +G Y  G 
Sbjct  333  RRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGV  392

Query  402  DADLDQAVQLWPRIRALIGQGPHE  425
            D+D D+A++  P I +++ Q+ +E
Sbjct  393  DTDTDKAIDTYPDICTFLRQSKDE  416

1654) Rsph17029_1691 in NC_009049


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  197 bits (732),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 163/384 (43%), Positives = 248/384 (65%), Gaps = 13/384 (3%)

Query  45   GALCRVATEDGREVQGEVIGFAQGRNLLFLDQMRAPVIAGARVRLVPGGQMAAVGSALLG  104
            G LC +   +     +EV+G+  ++ LL      A +  G +V  +   +  +VG ALLG
Sbjct  43   GELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  105  RVIDAEGAPLDGLPAPD-CTGEWP-LAGRVMNPLARTAVSRPLDVGVRAINAALTVGQGQ  162
            RVID+ G PLDG   P+ C   W    +    ++ R ++++PL  G+RAI++  T G+GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  163  RIGIVAGSGVGKSVLIEMMTRYTAADVIVVGLIGERAREVGAFAASVMQGEAARKLCMVA  222
            R+GI +++GVGKS L+ M+     AD  V+ LIGER+REV  F    + +E +RK C++ 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTL-SEETRKRCVIV  215

Query  223  VPA-DRSPllrlraarraTAIAEHFRSEGKQVLLIMDSLTRVAHAQREVGLALGEQPTAK  281
            V++ DR++L R+RA   AT+IAE FR +GK+V+L+ DSLTR A+A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  282  GYPPSVVSMIPGLIERTGPGLPGEGAITAIYTVLADGDDTTNDPVVDTARAILDGHFVLS  341
             YPP+V S +P L+ERTG G    G+ITA+YTVL +GDD  N+P+ D  R++LDGH+VLS
Sbjct  276  EYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDD-MNEPLADEVRSLLDGHIVLS  332

Query  342  RRQTQMGLYPAIDIPHSVSRTMNDVVDDRHrraaarlrqlialYSDNRDLMLMGGYAAGQ  401
            RR ++ G YPAID+  ++SR    V  + HR+ AA LR+ +ALY +   L+ +G Y  G 
Sbjct  333  RRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGV  392

Query  402  DADLDQAVQLWPRIRALIGQGPHE  425
            D+D D+A++  P I +++ Q+ +E
Sbjct  393  DTDTDKAIDTYPDICTFLRQSKDE  416

1655) fliI in NC_015858


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  197 bits (731),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 160/386 (42%), Positives = 249/386 (65%), Gaps = 18/386 (4%)

Query  50   LGDTVAIRAGEGAPSLAEIIRVADLQVLVKPFDDRIMPSLGAAVFEEGPLRIRP----AP  105
            +G+   I++GE    LAE++ + + + L+ PF        G  V    +LR R     + 
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGE  95

Query  106  EWRGRVINALGNAIDGKGALKPGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLC  165
               GRVI+++G ++DG+    P       ++++P+A+ R  + + L TG+  ID  +  C
Sbjct  96   ALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-C  152

Query  166  F-GQRIGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTI  224
              GQR+GIF+++GVGKSTLLAM+  A+D D+ VL L GERGREVRE ++ T++ +  K  
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  225  TVVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeepp  283
             +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  284  varGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHI  343
            V+  YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHI
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  344  VLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEKTRDLRAIGAYQ  403
            VL R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++    L  IG YQ
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  404  KGHDGLLDQAVDFVPRIYEALQQSPE  429
            +G D   D+A+D  P I   L+QS +
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKD  415

1656) RSKD131_1370 in NC_011963


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  197 bits (730),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 162/384 (43%), Positives = 247/384 (65%), Gaps = 13/384 (3%)

Query  45   GALCRVATEDGREVQGEVIGFAQGRNLLFLDQMRAPVIAGARVRLVPGGQMAAVGSGLLG  104
            G LC +   +     +EV+G+  ++ LL      A +  G +V  +   +  +VG +LLG
Sbjct  43   GELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLG  99

Query  105  RVIDAEGAPLDGLPAPD-CTGEWP-LAGRVMNPLARTAVNRPLDVGVRAINAALTVGQGQ  162
            RVID+ G PLDG   P+ C   W    +    ++ R ++ +PL  G+RAI++  T G+GQ
Sbjct  100  RVIDGFGRPLDGRELPEVC---WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  163  RIGIVAGSGVGKSVLIEMMTRYTAADVIVVGLIGERAREVGAFAASVMQGEAARKLCMVA  222
            R+GI +++GVGKS L+ M+     AD  V+ LIGER+REV  F    + +E +RK C++ 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTL-SEETRKRCVIV  215

Query  223  VPA-DRSPllrlraarraTAIAEHFRSEGKQVLLIMDSLTRVAHAQREVGLALGEQPTAK  281
            V++ DR++L R+RA   AT+IAE FR +GK+V+L+ DSLTR A+A RE++LA GE + + 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  282  GYPPSVVSMIPGLIERTGPGLPGEGAITAIYTVLADGDDTTNDPVVDTARAILDGHFVLS  341
             YPP+V S +P L+ERTG G    G+ITA+YTVL +GDD  N+P+ D  R++LDGH+VLS
Sbjct  276  EYPPGVFSALPRLLERTGMG--EKGSITAFYTVLVEGDD-MNEPLADEVRSLLDGHIVLS  332

Query  342  RRQTQMGLYPAIDIPHSVSRTMNDVVDDRHrraaarlrqlialYSDNRDLMLMGGYAAGQ  401
            RR ++ G YPAID+  ++SR    V  + HR+ AA LR+ +ALY +   L+ +G Y  G 
Sbjct  333  RRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGV  392

Query  402  DADLDQAVQLWPRIRALIGQGPHE  425
            D+D D+A++  P I +++ Q+ +E
Sbjct  393  DTDTDKAIDTYPDICTFLRQSKDE  416

1657) BAA13334_II00421 in NC_016777


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  197 bits (731),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 160/386 (42%), Positives = 250/386 (65%), Gaps = 18/386 (4%)

Query  50   LGDTVAIRAGEGAPSLAEIIRVADLQVLVKPFDDRIMPSLGAAVFEEGPLRIRP----AP  105
            +G+   I++GE    LAE++ + + + L+ PF        G  V    +LR R     + 
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGE  95

Query  106  EWRGRVINALGNAIDGKGALKPGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLC  165
               GRVI+++G ++DG+    P       ++++P+A+ R  + + L TG+  ID  +  C
Sbjct  96   ALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-C  152

Query  166  F-GQRIGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTI  224
              GQR+GIF+++GVGKSTLLAM+  A+D D+ VL L GERGREVRE ++ T++ +  K  
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  225  TVVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeepp  283
             +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  284  varGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHI  343
            V+  YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHI
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  344  VLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAIGAYQ  403
            VL R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++E   L  IG YQ
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  404  KSHDGLLDQAVDFVPRIYEALQQSPE  429
            ++ D   D+A+D  P I   L+QS +
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKD  415

1658) fliI in NC_006933


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  197 bits (731),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 160/386 (42%), Positives = 250/386 (65%), Gaps = 18/386 (4%)

Query  50   LGDTVAIRAGEGAPSLAEIIRVADLQVLVKPFDDRIMPSLGAAVFEEGPLRIRP----AP  105
            +G+   I++GE    LAE++ + + + L+ PF        G  V    +LR R     + 
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGE  95

Query  106  EWRGRVINALGNAIDGKGALKPGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLC  165
               GRVI+++G ++DG+    P       ++++P+A+ R  + + L TG+  ID  +  C
Sbjct  96   ALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-C  152

Query  166  F-GQRIGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTI  224
              GQR+GIF+++GVGKSTLLAM+  A+D D+ VL L GERGREVRE ++ T++ +  K  
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  225  TVVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeepp  283
             +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  284  varGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHI  343
            V+  YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHI
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  344  VLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAIGAYQ  403
            VL R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++E   L  IG YQ
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  404  KSHDGLLDQAVDFVPRIYEALQQSPE  429
            ++ D   D+A+D  P I   L+QS +
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKD  415

1659) fliI in NC_010740


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  197 bits (731),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 160/386 (42%), Positives = 250/386 (65%), Gaps = 18/386 (4%)

Query  50   LGDTVAIRAGEGAPSLAEIIRVADLQVLVKPFDDRIMPSLGAAVFEEGPLRIRP----AP  105
            +G+   I++GE    LAE++ + + + L+ PF        G  V    +LR R     + 
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGE  95

Query  106  EWRGRVINALGNAIDGKGALKPGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLC  165
               GRVI+++G ++DG+    P       ++++P+A+ R  + + L TG+  ID  +  C
Sbjct  96   ALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-C  152

Query  166  F-GQRIGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTI  224
              GQR+GIF+++GVGKSTLLAM+  A+D D+ VL L GERGREVRE ++ T++ +  K  
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  225  TVVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeepp  283
             +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  284  varGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHI  343
            V+  YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHI
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  344  VLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAIGAYQ  403
            VL R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++E   L  IG YQ
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  404  KSHDGLLDQAVDFVPRIYEALQQSPE  429
            ++ D   D+A+D  P I   L+QS +
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKD  415

1660) fliI in NC_012442


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  197 bits (730),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 160/386 (42%), Positives = 250/386 (65%), Gaps = 18/386 (4%)

Query  50   LGDTVAIRAGEGAPSLAEIIRVADLQVLVKPFDDRIMPSLGAAVFEEGPLRIRP----AP  105
            +G+   I++GE    LAE++ + + + L+ PF        G  V    +LR R     + 
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGE  95

Query  106  EWRGRVINALGNAIDGKGALKPGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLC  165
               GRVI+++G ++DG+    P       ++++P+A+ R  + + L TG+  ID  +  C
Sbjct  96   ALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-C  152

Query  166  F-GQRIGIFAGSGVGKSTLLAIMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTI  224
              GQR+GIF+++GVGKSTLLA++  A+D D+ VL L GERGREVRE ++ T++ +  K  
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  225  TVVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeepp  283
             +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  284  varGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHI  343
            V+  YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHI
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  344  VLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAIGAYQ  403
            VL R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++E   L  IG YQ
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  404  KGHDGLLDQAVDFVPRIYEALQQSPE  429
            +G D   D+A+D  P I   L+QS +
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKD  415

1661) fliI in NC_007624


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  197 bits (731),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 160/386 (42%), Positives = 250/386 (65%), Gaps = 18/386 (4%)

Query  50   LGDTVAIRAGEGAPSLAEIIRVADLQVLVKPFDDRIMPSLGAAVFEEGPLRIRP----AP  105
            +G+   I++GE    LAE++ + + + L+ PF        G  V    +LR R     + 
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGE  95

Query  106  EWRGRVINALGNAIDGKGALKPGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLC  165
               GRVI+++G ++DG+    P       ++++P+A+ R  + + L TG+  ID  +  C
Sbjct  96   ALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-C  152

Query  166  F-GQRIGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTI  224
              GQR+GIF+++GVGKSTLLAM+  A+D D+ VL L GERGREVRE ++ T++ +  K  
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  225  TVVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeepp  283
             +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  284  varGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHI  343
            V+  YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHI
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  344  VLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAIGAYQ  403
            VL R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++E   L  IG YQ
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  404  KSHDGLLDQAVDFVPRIYEALQQSPE  429
            ++ D   D+A+D  P I   L+QS +
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKD  415

1662) BM28_B0131 in NC_017245


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  197 bits (730),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 160/386 (42%), Positives = 250/386 (65%), Gaps = 18/386 (4%)

Query  50   LGDTVAIRAGEGAPSLAEIIRVADLQVLVKPFDDRIMPSLGAAVFEEGPLRIRP----AP  105
            +G+   I++GE    LAE++ + + + L+ PF        G  V    +LR R     + 
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGE  95

Query  106  EWRGRVINALGNAIDGKGALKPGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLC  165
               GRVI+++G ++DG+    P       ++++P+A+ R  + + L TG+  ID  +  C
Sbjct  96   ALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-C  152

Query  166  F-GQRIGIFAGSGVGKSTLLAIMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTI  224
              GQR+GIF+++GVGKSTLLA++  A+D D+ VL L GERGREVRE ++ T++ +  K  
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  225  TVVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeepp  283
             +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  284  varGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHI  343
            V+  YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHI
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  344  VLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAIGAYQ  403
            VL R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++E   L  IG YQ
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  404  KGHDGLLDQAVDFVPRIYEALQQSPE  429
            +G D   D+A+D  P I   L+QS +
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKD  415

1663) BM590_B0131 in NC_017247


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  197 bits (730),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 160/386 (42%), Positives = 250/386 (65%), Gaps = 18/386 (4%)

Query  50   LGDTVAIRAGEGAPSLAEIIRVADLQVLVKPFDDRIMPSLGAAVFEEGPLRIRP----AP  105
            +G+   I++GE    LAE++ + + + L+ PF        G  V    +LR R     + 
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGE  95

Query  106  EWRGRVINALGNAIDGKGALKPGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLC  165
               GRVI+++G ++DG+    P       ++++P+A+ R  + + L TG+  ID  +  C
Sbjct  96   ALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-C  152

Query  166  F-GQRIGIFAGSGVGKSTLLAIMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTI  224
              GQR+GIF+++GVGKSTLLA++  A+D D+ VL L GERGREVRE ++ T++ +  K  
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  225  TVVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeepp  283
             +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  284  varGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHI  343
            V+  YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHI
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  344  VLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAIGAYQ  403
            VL R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++E   L  IG YQ
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  404  KGHDGLLDQAVDFVPRIYEALQQSPE  429
            +G D   D+A+D  P I   L+QS +
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKD  415

1664) BMNI_II0126 in NC_017283


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  197 bits (730),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 160/386 (42%), Positives = 250/386 (65%), Gaps = 18/386 (4%)

Query  50   LGDTVAIRAGEGAPSLAEIIRVADLQVLVKPFDDRIMPSLGAAVFEEGPLRIRP----AP  105
            +G+   I++GE    LAE++ + + + L+ PF        G  V    +LR R     + 
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGE  95

Query  106  EWRGRVINALGNAIDGKGALKPGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLC  165
               GRVI+++G ++DG+    P       ++++P+A+ R  + + L TG+  ID  +  C
Sbjct  96   ALLGRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-C  152

Query  166  F-GQRIGIFAGSGVGKSTLLAIMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTI  224
              GQR+GIF+++GVGKSTLLA++  A+D D+ VL L GERGREVRE ++ T++ +  K  
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  225  TVVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeepp  283
             +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  284  varGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHI  343
            V+  YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHI
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  344  VLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAIGAYQ  403
            VL R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++E   L  IG YQ
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  404  KGHDGLLDQAVDFVPRIYEALQQSPE  429
            +G D   D+A+D  P I   L+QS +
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKD  415

1665) fliI in NC_010104


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  196 bits (729),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 160/386 (42%), Positives = 251/386 (66%), Gaps = 18/386 (4%)

Query  50   LGDTVAIRAGEGAPSLAEIIRVADLQVLVKPFDDRIMPSLGAAVFEEGPLRIRP----AP  105
            +G+   I++GE    LAE++ + + + L+ PF        G  V    +LR R     + 
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGE  95

Query  106  EWRGRVINALGNAIDGKGALKLGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLC  165
               GRVI+++G ++DG+    +  +    ++++P+A+ R  + + L TG+  ID  +  C
Sbjct  96   ALLGRVIDGFGRPLDGRELPEVCWK--DYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-C  152

Query  166  F-GQRIGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTI  224
              GQR+GIF+++GVGKSTLLAM+  A+D D+ VL L GERGREVRE ++ T++ +  K  
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  225  TVVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeepp  283
             +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  284  varGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHI  343
            V+  YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHI
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  344  VLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAIGAYQ  403
            VL R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++E   L  IG YQ
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  404  KGHDGLLDQAVDFVPRIYEALQQSPE  429
            +G D   D+A+D  P I   L+QS +
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKD  415

1666) BCA52141_II1030 in NC_016796


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  196 bits (729),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 160/386 (42%), Positives = 251/386 (66%), Gaps = 18/386 (4%)

Query  50   LGDTVAIRAGEGAPSLAEIIRVADLQVLVKPFDDRIMPSLGAAVFEEGPLRIRP----AP  105
            +G+   I++GE    LAE++ + + + L+ PF        G  V    +LR R     + 
Sbjct  42   MGELCCIKPGEE---LAEVVGINGSKALLSPFTSTAGLHCGQQVM---ALRRRHQVPVGE  95

Query  106  EWRGRVINALGNAIDGKGALKLGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLC  165
               GRVI+++G ++DG+    +  +    ++++P+A+ R  + + L TG+  ID  +  C
Sbjct  96   ALLGRVIDGFGRPLDGRELPEVCWK--DYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-C  152

Query  166  F-GQRIGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTI  224
              GQR+GIF+++GVGKSTLLAM+  A+D D+ VL L GERGREVRE ++ T++ +  K  
Sbjct  153  GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRC  212

Query  225  TVVATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeepp  283
             +V +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +
Sbjct  213  VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETA  272

Query  284  varGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHI  343
            V+  YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHI
Sbjct  273  VSGEYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHI  329

Query  344  VLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAIGAYQ  403
            VL R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++E   L  IG YQ
Sbjct  330  VLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQ  389

Query  404  KGHDGLLDQAVDFVPRIYEALQQSPE  429
            +G D   D+A+D  P I   L+QS +
Sbjct  390  RGVDTDTDKAIDTYPDICTFLRQSKD  415

1667) fliI in NC_005085


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  196 bits (727),  Expect = 3e-51, Method: Compositional matrix adjust.
 Identities = 162/367 (45%), Positives = 238/367 (65%), Gaps = 7/367 (1%)

Query  56   AQVVGFRREVSFLMPFKKPVGLATGARVLPAPDNGGLMIGDGWLGRIVNGLGEPLDGKGR  115
            A+VVG+    ++L PF    GL  G +V++      + +G++ LGR+++G+G PLDG+  
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-  113

Query  116  LGGD--APLAAHPPQINPLKKKPVDTPLDVGVRAINGFLTMGRGQRVGLFAGSGVGKSVL  173
            L         A PP   ++ ++P+  PL  G+RAI++  T G GQRVG+F+++GVGKS L
Sbjct  114  LPEVCWKDYDAMPPP--AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL  171

Query  174  LGMITRHTEAEVVVVGLIgergrevrefveHALGAEGLAKAVLVVAPADESPLMRLKATE  233
            L+M+    +A+  V+ LIGERGREVREF++ +L+ E   + V+VVA +D ++L R++A  
Sbjct  172  LAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF  231

Query  234  LCHTIAAHYRDRGRNVLLLVDSLTRYAMAQREVALALGEPPATRGYPPSVFGLLPslaes  293
            +  TIA  +RD G+ V+LL DSLTRYA A RE+ALA GE + +  YPP+VF+ LP     
Sbjct  232  VATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALP--RLL  289

Query  294  agngeggagsmsaIYTVLAEGDDQQDPVVDTARAILDGHIVLSRELAERGHYPAIDISRS  353
               G G  GS++A+YTVL EGDD ++P+ D  R++LDGHIVLSR LAERGHYPAID+  +
Sbjct  290  ERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLAT  349

Query  354  VSRCMSQLIDADHAAVARELRGAWSRYQEVRGLLPLGAYVPGADPATDRALRLQPRIEAL  413
            +SR  + +   +H  +A  LR   + YQEV  L+ +G Y  G D  TD+A+   P I ++
Sbjct  350  LSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTF  409

Query  414  LCQDAGE  420
            L Q  +E
Sbjct  410  LRQSKDE  416

1668) fliI in NC_000918


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  195 bits (725),  Expect = 4e-51, Method: Compositional matrix adjust.
 Identities = 151/363 (42%), Positives = 250/363 (69%), Gaps = 1/363 (0%)

Query  62   GEVIGFSGDKVLVMPYEPVFGLRKGDKVLLKNELvstktgngvvgkvvDPFGNPLDGGFI  121
            +EV+G++G K L+ P+ +  GL+ G++V+          G++++G+V+D FG PLDG  +
Sbjct  55   AEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL  114

Query  122  GFVEEKGLELPQINPLYRERIREVFDTGVRSVNALFTLGKGQKIGIFAGAGVGKSTLLGM  181
              V  K+ +     ++ R+ I + + TG+R+++++ T G GQ++GIF+++GVGKSTLL+M
Sbjct  115  PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAM  174

Query  182  ITRHSKADVVVLALIGERGRevkefleevlgeeglkkSVVVVSTADQSPILKVKGAISAV  241
            +   + AD  VL LIGERGREV+EF++  L+EE  K+ V+VV+T+D++++ +V++ + A 
Sbjct  175  LCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVAT  234

Query  242  VHAHHFASQGKDVLLLMDSITRLALAQREIGLAAGEPPTLKGFTPSVFQLLTRIAESCGA  301
              A+ F  +GK V+LL DS+TR A A REI+LAAGE +    + P+VF  L R+ E  G 
Sbjct  235  TIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM  294

Query  302  FKKGSITGIFTVLVEGDDISLDPIADSLMGVLDGHIILSRKRAVRGLFPAVDPVRSLSRL  361
              KGSIT+++TVLVEGDD++ +P+AD + ++LDGHI+LSR+ A RG +PA+D + +LSR+
Sbjct  295  GEKGSITAFYTVLVEGDDMN-EPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRV  353

Query  362  MPKLVSEEHFMKANFFKEVLSKFEDVEELVRIGLYKGGSNPLVDKVINNLEKVESFFKQK  421
             P + S+EH   A +++  L+ +++VE L+RIG Y+ G +   DK I+    + +F++Q 
Sbjct  354  FPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQS  413

Query  422  PEE  424
             +E
Sbjct  414  KDE  416

1669) BMEII1105 in NC_003318


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  194 bits (721),  Expect = 7e-51, Method: Compositional matrix adjust.
 Identities = 146/323 (46%), Positives = 222/323 (69%), Gaps = 8/323 (2%)

Query  36   GRVINALGNAIDGKGALKPGTRPMAAESLAPAALRRARVDRGLRTGVNVIDIFTPLCF-G  94
            GRVI+++G ++DG+    P       ++++P+A+ R  + + L TG+  ID  +  C  G
Sbjct  99   GRVIDGFGRPLDGREL--PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CGEG  155

Query  95   QRTGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVREMLEETMAGHLGKTITVV  154
            QR GIF+++GVGKSTLLAM+  A+D D+ VL L GERGREVRE ++ T++ +  K   +V
Sbjct  156  QRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV  215

Query  155  ATGDESPMMRRLAPN-TATAIAEYFRDLGQNVLLIVDSVTRFahaarevaiaaeeppvar  213
             +  + P + R+ +   AT+IAE+FRD G+ V+L+ DS+TR+A+AARE+A+AA E +V+ 
Sbjct  216  VATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG  275

Query  214  GYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPVSDTIRGTLDGHIVLD  273
             YPP+VFS LPRLLER+G G     GSIT++Y+VLV+GDD N+P++D +R+ LDGHIVL 
Sbjct  276  EYPPGVFSALPRLLERTGMGEK---GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLS  332

Query  274  RAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAIGAYQKGH  333
            R +A +G++PA+D+ A++SR+     + E+R+L   LR  +A ++E   L  IG YQ+G 
Sbjct  333  RRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGV  392

Query  334  DGLLDQAVDFVPRIYEALQQSPE  356
            D   D+A+D  P I   L+QS +
Sbjct  393  DTDTDKAIDTYPDICTFLRQSKD  415

1670) fliI2 in NC_007899


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  194 bits (721),  Expect = 8e-51, Method: Compositional matrix adjust.
 Identities = 161/400 (41%), Positives = 253/400 (64%), Gaps = 6/400 (1%)

Query  21   GLLSKVSGTLLEAQGLSACLGELCRVCTPKYPDLLAEVIGFHNQTTLLMSLSPMHYVTLG  80
            G +  VS+TLL+A   +  +GELC  C  K  + LAEV+G++   +LL ++++   +  G
Sbjct  23   GRIQDVSATLLNAWLPGVFMGELC--CI-KPGEELAEVVGINGSKALLSPFTSTAGLHCG  79

Query  81   SEVlplrrppslhlsDHLLGRVIDGFGNPLDNKENLPKTHIKPLISPPPLPMSRQPIQEI  140
             +V++LRR   + +++ LLGRVIDGFG PLD +E LP    K   + PP +M RQPI + 
Sbjct  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQP  138

Query  141  FPTGIKVIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIASGSKSTINVIALIGERGREVRE  200
            + TGI+ ID+  T G GQR+G+FS PG GKS+LL+ + +++ +  NV+ LIGERGREVRE
Sbjct  139  LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVRE  198

Query  201  YIEQHASGLQEHRTVIIASPAHETAPTKVMSGRAAMTIAEYFRDQGHDVLFIMDSLSRWI  260
            +I+   S     R VI+ + ++  A  +V +   A TIAE+FRD+G  V+++ DSL+R  
Sbjct  199  FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA  258

Query  261  AALQEVALATGETLAAHNYAAYVFHHVSEFTERAGNNDRGSITALYAILHYPNH-PDIFT  319
             A +E+ALA+GET  + +Y++ VF  ++ + ER+G  ++GSITA+Y++L   ++  + ++
Sbjct  259  RAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLA  318

Query  320  DYLKSLLDGHFFLTNQGKALAS-PPIDIllslsrsakklslPHHYAAAEKLRSLLKTYQE  378
            D ++SLLDGH+ L+ +    +  P+ID+L +LSR    ++  +H   A  LR  L  YQE
Sbjct  319  DEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQE  378

Query  379  ALDIIHLGAYTPGHDKDLDDAVKILPNIKKFLAQPLSSYC  418
               +I++G Y  G D D D A+   P+I  FL Q+    C
Sbjct  379  VELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVC  418

1671) fliI in NC_015259


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  194 bits (721),  Expect = 9e-51, Method: Compositional matrix adjust.
 Identities = 168/382 (44%), Positives = 254/382 (67%), Gaps = 16/382 (4%)

Query  46   LGDLVVLSGKGGERRSEIIRLDEQDVLVKPFDSHVDIAIGAR--AFRKGSLTIHPHESWK  103
            +G+L  +  K GE  +E++ ++    L+ PF S  ++  G +  A+R+    +   E+  
Sbjct  42   MGELCCI--KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRH-QVPVGEALL  98

Query  104  GRVIDALGHPADDRGVLRPGPAAMLPDCD--PPATLERARIRKPVRTGVRVIDLFTPLCV  161
            GRVID++G+P D+R +    P     D D  PP+++ R  I +P+ TG+R ID  +  C 
Sbjct  99   GRVIDGFGRPLDGREL----PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVAT-CG  153

Query  162  -GQRIGIFAGSGVGKSTLLAMLAGSGDFDTvvvglvgergrevrefvedvLGE-ARERSV  219
             GQR+GIF+++GVGKSTLLAML  + D D+ V+ L+GERGREVREF++  L+E +R R V
Sbjct  154  EGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCV  213

Query  220  VVVATGNESAMMRRLAPKTAMGVAEYFRDLGQSVLLIIDSATRFAHAARDVAMAAGEPPV  279
            +VVAT++ +A+ R  A   A  +AE+FRD G+ V+L+ DS TR+A+AAR++A+AAGE +V
Sbjct  214  IVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAV  273

Query  280  ARGYTPSVFSDLTRLLERAGPGGEGKGAITGIFSVLVDGDDHNDPVADTLRGVLDGHIVL  339
            +  Y P+VFS L RLLER+G G   KG+IT++++VLV+GDD N+P+AD +R++LDGHIVL
Sbjct  274  SGEYPPGVFSALPRLLERTGMGE--KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVL  331

Query  340  DRSIADAGRYPAVDVLKSVSRLSQHAWSAEERELILRLKAMISRFEDTRDLRLMGGYQPG  399
             R +A+ G+YPA+DVL ++SR+     S E+R+L   L+  ++ +++   L  +G YQ G
Sbjct  332  SRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRG  391

Query  400  SDPALDKACTLVPRIYEALRQD  421
             D   DKA    P I   LRQ 
Sbjct  392  VDTDTDKAIDTYPDICTFLRQS  413

1672) AO9_04670 in NC_020248


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  193 bits (717),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 152/369 (42%), Positives = 241/369 (66%), Gaps = 6/369 (1%)

Query  40   LGELCRICTPKHPDILAEVIGFHNQTTLLMSLSPMYHVALGSEVlplrrppslhlsDHLL  99
            +GELC  C  K  + LAEV+G++   +LL ++++   +  G +V++LRR   + +++ LL
Sbjct  42   MGELC--CI-KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  100  GRVIDGFGNPLDNKESLPKTQIKPLISPPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQR  159
            GRVIDGFG PLD +E LP    K   + PP++M RQPI + + TGI+AID+  T G GQR
Sbjct  99   GRVIDGFGRPLDGRE-LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  160  IGVFSEPGSGKSSLLSAIASGSKSTINVIALIGERGREVREYIEQHASGLKHHRTIIVAS  219
            +G+FS PG GKS+LL+ + +++ +  NV+ LIGERGREVRE+I+   S   + R +IV +
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  220  PAHETAPTKVISGRAAMTIAEYFRDQGHDVLFIMDSLSRWIAALQEVALATGETLAAHHY  279
             ++  A  +V +   A TIAE+FRD+G  V+++ DSL+R   A +E+ALA+GET  + +Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  280  AASVFHHVSEFTERAGNNERGSITALYAILYYPNH-PDIFTDYLKSLLDGHFFLTHQGKA  338
            +++VF  ++ + ER+G  E+GSITA+Y++L   ++  + ++D ++SLLDGH+ L+++   
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  339  LAS-PPIDIllslsrsakklalPHHYAAAEKLRSLLKTYQEALDIIHLGAYSPGHDKDLD  397
             +  P+ID+L +LSR    ++  +H   A  LR  L  YQE   +I++G Y  G D D D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  398  DAVKILPSI  406
             A+   P I
Sbjct  398  KAIDTYPDI  406

1673) CCA00909 in NC_003361


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  190 bits (705),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 159/395 (41%), Positives = 251/395 (64%), Gaps = 6/395 (1%)

Query  40   LGELCRICTPKYPDLLAEVIGFHNQTTLLMSLSPMHYVALGSEVlplrrppslhlsDHLL  99
            +GELC  C  K  + LAEV+G++   +LL ++++   +  G +V++LRR   + +++ LL
Sbjct  42   MGELC--CI-KPGEELAEVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALL  98

Query  100  GRVIDGFGNPLDNKKSLPKTHIKPLIApppppMSRQPIQEIFPTGIKAIDAFLTLGKGQR  159
            GRVIDGFG PLD +  LP    K   A PPP+M RQPI + + TGI+AID+  T G GQR
Sbjct  99   GRVIDGFGRPLDGR-ELPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQR  157

Query  160  IGVFSEPGSGKSSLLSAIASGSKSTINVIALIGERGREVREYIEQHSSGLKQLRTIIVAS  219
            +G+FS PG GKS+LL+ + +++ +  NV+ LIGERGREVRE+I+   S   + R +IV +
Sbjct  158  VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVA  217

Query  220  PAHETAPTKVIAGRAAMTIAEYFRDQGHDVLFIMDSLSRWIAALQEVALATGETLAAHQY  279
             ++  A  +V A   A TIAE+FRD+G  V+++ DSL+R   A +E+ALA+GET  + +Y
Sbjct  218  TSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEY  277

Query  280  AASVFHHVSEFTERAGNNDRGSITALYAILHYPNH-PDIFTDYLKSLLDGHFFLTNQGKA  338
            +++VF  ++ + ER+G  ++GSITA+Y++L   ++  + ++D ++SLLDGH+ L+ +   
Sbjct  278  PPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAE  337

Query  339  LAS-PPIDIllslsrsakklsrPHHYAAAEKLRALLKTYQEALDIIQLGAYTPGQDKDLD  397
             +  P+ID+L +LSR    ++  +H   A  LR  L  YQE   +I++G Y  G D D D
Sbjct  338  RGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTD  397

Query  398  DAVKILPNIKKFLSQPLSSYCQLENTLKELEALVN  432
             A+   P+I  FL Q+    C  E  +  L+ ++ 
Sbjct  398  KAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1674) fliI in NC_015976


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  187 bits (694),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 149/349 (43%), Positives = 240/349 (69%), Gaps = 5/349 (1%)

Query  63   EVVGFRGSRAVLVPLDQDAPLENGARVEPDSAANMVQVGEGLIGRVVDAMGQPLDRKGPI  122
            EVVG+ GS+A+L P+   A L+ G +V +    + V VGE+L+GRV+D+ G+PLD  G  
Sbjct  56   EVVGINGSKALLSPFTSTAGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRE  113

Query  123  LANGQWP-LNGVRGNVLDRGRVTERFDLGVRAVNALLTAGRGQRIAIMAGSGVGKSVLMG  181
            L++  W   +++    + R  +T+ +  G+RA++++ T G GQR++I +++GVGKS L++
Sbjct  114  LPEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA  173

Query  182  QMIGGAEADIIVVGLIGERGREVSDFLETKIGGALMGKSvvvavpadhppvLrlraaara  241
             +  +++AD  V+ LIGERGREV +F++  ++     + V+V   +D+P++ R+RA   A
Sbjct  174  MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVA  233

Query  242  taiaeyfraRGKNVLLLIDSLTRCAHAQREIGLSLGEPPAMKGYPPSALAFIPRLVERAG  301
            T+IAE+FR  GK V+LL DSLTR A+A REI+L+ GE +    YPP+ ++ +PRL+ER+G
Sbjct  234  TTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG  293

Query  302  VDSRSGGAITAIYTVLADGDDNDDPIVDTARAIVDGHIVLSRQLSEQSIFPAIDVGRSLS  361
            ++ +  G+ITA+YTVL +GDD ++P+ D  R+++DGHIVLSR+L+E++ +PAIDV  +LS
Sbjct  294  MGEK--GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLS  351

Query  362  RVMADIVDEQHlaaaanyrrlwaayEENRDLILMGAYRPGNDATIDEAV  410
            RV + +  ++H   AA  RR  A Y+E   LI +G Y+ G D+  D A+
Sbjct  352  RVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDTDTDKAI  400

1675) KVU_1929 in NC_017384


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  184 bits (681),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 148/338 (44%), Positives = 229/338 (68%), Gaps = 5/338 (1%)

Query  109  IGRVIDPDGAALDGRPLLHGLVPRDLrqspppaaarramgarlrTGYMVFDTLLPIVQGQ  168
            +GRVID  G +LDGR L   +  +D    PPPA  R+++   L TG   +D++    +GQ
Sbjct  98   LGRVIDGFGRPLDGREL-PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  169  RLGLFAGSGVGKSTLLGGLARSIAADVIVIGLVGERGREVRHFIEEVLGPQGMARAVVVA  228
            R+G+F+++GVGKSTLL+ L  +  AD  V+ L+GERGREVR+FI+  L+ +   R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  229  ATSDAAPQQRRRCAWAATTVAEYFRDQGRQVLLMLDSVTRFAEahrelasaageaaalrg  288
            ATSD ++ +R R    ATT+AE+FRD+G++V+L+ DS+TR+A A RE+A AAGE+A    
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  289  YPASTGPTIAALCERAGPGMGQQGDITAIYSVLVQGSDMEEPVADMLRGTLDGHVILDRA  348
            YP++  ++++ L ER+  GMG++G ITA+Y+VLV+G DM+EP+AD +R+ LDGH++L R 
Sbjct  277  YPPGVFSALPRLLERT--GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  349  IAESGRFPAVDVLRSVSRSLPAAASLPENALIAEARSHMGQYDRAALMIRAGLYVGGSDP  408
            +AE G++PA+DVL ++SR +P  +S  +  L A  R +++ Y+   L+IR G Y  G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  409  IVDAAIAARPGLENLLAQSN--LPSNAAAFAALRQVLT  444
              D AI + P++  +L QS+  + +    +  L+Q+LT
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432

1676) EIO_2401 in NC_014625


> NC_006905_P3|40|G38|62180006|YP_216423.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|35710..37011|ssaN|SC1436|type 
III secretion system ATPase
Length=433

 Score =  184 bits (681),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 148/338 (44%), Positives = 229/338 (68%), Gaps = 5/338 (1%)

Query  109  IGRVIDPDGAALDGRPLLHGLVPRDLrqspppaaarramgarlrTGYMVFDTLLPIVQGQ  168
            +GRVID  G +LDGR L   +  +D    PPPA  R+++   L TG   +D++    +GQ
Sbjct  98   LGRVIDGFGRPLDGREL-PEVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQ  156

Query  169  RLGLFAGSGVGKSTLLGGLARSIAADVIVIGLVGERGREVRHFIEEVLGPQGMARAVVVA  228
            R+G+F+++GVGKSTLL+ L  +  AD  V+ L+GERGREVR+FI+  L+ +   R V+V 
Sbjct  157  RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV  216

Query  229  ATSDAAPQQRRRCAWAATTVAEYFRDQGRQVLLMLDSVTRFAEahrelasaageaaalrg  288
            ATSD ++ +R R    ATT+AE+FRD+G++V+L+ DS+TR+A A RE+A AAGE+A    
Sbjct  217  ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE  276

Query  289  YPASTGPTIAALCERAGPGMGQQGDITAIYSVLVQGSDMEEPVADMLRGTLDGHVILDRA  348
            YP++  ++++ L ER+  GMG++G ITA+Y+VLV+G DM+EP+AD +R+ LDGH++L R 
Sbjct  277  YPPGVFSALPRLLERT--GMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR  334

Query  349  IAESGRFPAVDVLRSVSRSLPAAASLPENALIAEARSHMGQYDRAALMIRAGLYVGGSDP  408
            +AE G++PA+DVL ++SR +P  +S  +  L A  R +++ Y+   L+IR G Y  G D 
Sbjct  335  LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGVDT  394

Query  409  IVDAAIAARPGLENLLAQSN--LPSNAAAFAALRQVLT  444
              D AI + P++  +L QS+  + +    +  L+Q+LT
Sbjct  395  DTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILT  432