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Homologs of SF3002 gene of NC_004337_P1

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ROD_49621
( - )

NC_013716
(Citrobacter rodentium ICC168)

0.0

92.4

2) ROD_10891
( - )

NC_013716
(Citrobacter rodentium ICC168)

e-129

88.9

3) G2583_4403
( - )

NC_013941
(Escherichia coli CB9615)

e-128

86.2

• Sequence Alignments

1) ROD_49621 in NC_013716


>NC_004337_P1|40|G36|24114266|NP_708776.1|Shigella_flexneri_2a_str._301|+|45815..46657|-|SF3002|hypothetical 
          Length = 843

 Score = 1396 bits (3602), Expect = 0.0
 Identities = 754/816 (92%)
 Strand = Plus / Plus

Query: 25  ccggaactggtcaacgggcatacggacgttatctgctcaaccagtatccgccacattctg 84
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25  ccggaagtggtcaacgggcatacggacgttatctgctcaaccagtatccgccacattctg 84

Query: 85  gctgtacgaaagagtacgttgctgcaaatcgacacacttacccggcaactggtagaaatc 144
           ||||||||||||||||| |||||||||||||||||||||| ||| |||||||  ||| | 
Sbjct: 85  gctgtacgaaagagtacattgctgcaaatcgacacacttatccgacaactggctgaagta 144

Query: 145 tcagcaatgacagaaagtattggcggtaaaaccgcactggactgggcgatgaaacaggat 204
           ||||||||||||||||||||| | |||||||| || ||||||||||| ||||||||||||
Sbjct: 145 tcagcaatgacagaaagtattagaggtaaaacggctctggactgggccatgaaacaggat 204

Query: 205 tttcgctgcggttgctggctgatggaaaaacctgaaacggcaatgaaagccatcacccgc 264
           |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||
Sbjct: 205 tttcgctgcggttgctggctgatggagaaaccggaaaccgcaatgaaagccatcacacgc 264

Query: 265 aatctcgatcgcgaaatctggcgtgacctgatgcaacgttcctggatgctgtcattaatg 324
           ||||| ||||||||| |||||||||| ||||||||||||||| ||||||||    | |||
Sbjct: 265 aatcttgatcgcgaactctggcgtgatctgatgcaacgttccgggatgctgagtctgatg 324

Query: 325 gatgcgcaggcccgtgatacatggtaccggtcactggagtacgataattttccggaaatt 384
           ||||||||| |||| || ||||||||| |||||||||| || ||||||||||||||||| 
Sbjct: 325 gatgcgcagacccgggacacatggtacaggtcactggaatatgataattttccggaaatc 384

Query: 385 agcgaagcgaacattctgagcacatttgaacaactgcaccagaacaaggatgaggtgttt 444
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 385 agcgaagcgaacattctgagcacatttgaacaactgcaccagaacaaagatgaagtgttt 444

Query: 445 gagcgaggagtggtcaacgtcttcaggggactgagctagaattacaaaactaattcaccc 504
           || || |||||| ||||||||||||  || ||||||| | |||||||||| || ||||||
Sbjct: 445 gaacggggagtgatcaacgtcttcaaagggctgagctgggattacaaaaccaactcaccc 504

Query: 505 tgcaaatttggcagtaaaattatcgtcaacaacctggtgaggtgggaccggtggggattt 564
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 tgtaaatttggcagtaaaattatcgtcaacaacctggtgaggtgggaccggtgggggttt 564

Query: 565 catcttatcaccgggcaacaggcagaccgacttgccgacctggaaagaatgctgcatctg 624
           ||||||||||||||||||||| | |||||||| | |||||||||||||||||| ||||||
Sbjct: 565 catcttatcaccgggcaacagactgaccgactcgtcgacctggaaagaatgctacatctg 624

Query: 625 ttcagcggcaaaccgatccccgacaaccgggaaaacatcactattcatctggatgagcac 684
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||
Sbjct: 625 ttcagcggcaaaccgatccccgacaaccgggaaaacatcactattcgtctggatggtcac 684

Query: 685 atccggtctgttcagggtaaagagtgctatgaagatgaaatgttcagaattaaatacttt 744
           |||| ||| ||||||||||||||| |||||||||| || |||||||  ||||||||||||
Sbjct: 685 atccagtccgttcagggtaaagagcgctatgaagacgagatgttcatcattaaatacttt 744

Query: 745 aagaagggatctgcacacatcactttcaaaaggctggaactgattgacagaattaacgat 804
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagaagggatctgcacacatcactttcaaaaggctggaactgattgacagaattaacgat 804

Query: 805 ataatagccaggtactttccttctgtgctctcagcc 840
           ||||||||||||||||||||||||||||||||||||
Sbjct: 805 ataatagccaggtactttccttctgtgctctcagcc 840

2) ROD_10891 in NC_013716


>NC_004337_P1|40|G36|24114266|NP_708776.1|Shigella_flexneri_2a_str._301|+|45815..46657|-|SF3002|hypothetical 
          Length = 843

 Score = 459 bits (1183), Expect = e-129
 Identities = 247/275 (90%)
 Strand = Plus / Plus

Query: 480 agctgggattacaaaaccaacacaccctgtaaatttggcagtaaaattatcgtcaacaat 539
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 478 agctgggattacaaaaccaactcaccctgtaaatttggcagtaaaattatcgtcaacaac 537

Query: 540 ctggtgagatgggaccggtggggatttcatcttatcaccgggcaacaggccgaccgactt 599
           |||||||| |||||||||||||| |||||||||||||||||||||||| | |||||||| 
Sbjct: 538 ctggtgaggtgggaccggtgggggtttcatcttatcaccgggcaacagactgaccgactc 597

Query: 600 gccgatctggaaagaatactgcatctgttcagcaataaaccagtccccgattgcagggaa 659
           | ||| ||||||||||| || ||||||||||||   |||||  |||||||   | |||||
Sbjct: 598 gtcgacctggaaagaatgctacatctgttcagcggcaaaccgatccccgacaaccgggaa 657

Query: 660 aacatcaccattcatctggatgaccacatccagtctgttcagggtaaagagtgctatgaa 719
           |||||||| |||| ||||||||  ||||||||||| ||||||||||||||| ||||||||
Sbjct: 658 aacatcactattcgtctggatggtcacatccagtccgttcagggtaaagagcgctatgaa 717

Query: 720 gatgagatgttcatcattaaatattttaagaaggg 754
           || |||||||||||||||||||| |||||||||||
Sbjct: 718 gacgagatgttcatcattaaatactttaagaaggg 752


 Score = 451 bits (1164), Expect = e-127
 Identities = 262/303 (86%)
 Strand = Plus / Plus

Query: 145 tcagcactgacagaaatgattggaggtaaaaccgccctggactgggccgatgaaacagga 204
           |||||| |||||||||  ||| |||||||||| || |||||||||||| |||||||||||
Sbjct: 145 tcagcaatgacagaaagtattagaggtaaaacggctctggactgggcc-atgaaacagga 203

Query: 205 ttttcgctgtggctgctggctgacggagaaacctgaaaccgcgatgaaaaccatcacctg 264
           ||||||||| || |||||||||| ||||||||| |||||||| |||||| |||||||  |
Sbjct: 204 ttttcgctgcggttgctggctgatggagaaaccggaaaccgcaatgaaagccatcacacg 263

Query: 265 gaatctcgaccgtgaaatctggcgtgacctgatgcaacgttccgggatgctgagtctgat 324
            ||||| || || ||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 caatcttgatcgcgaactctggcgtgatctgatgcaacgttccgggatgctgagtctgat 323

Query: 325 ggatgcacaggacggcgatacatggcagcggtcactggagtacgataattttccggaaat 384
           |||||| |||  | | || |||||| |  |||||||||| || |||||||||||||||||
Sbjct: 324 ggatgcgcagacccgggacacatggtacaggtcactggaatatgataattttccggaaat 383

Query: 385 cagtgaagagaatatcctgagcagatttgaacaactgcaccagagcagggatgaggtgtt 444
           ||| |||| ||| || ||||||| |||||||||||||||||||| ||  ||||| |||||
Sbjct: 384 cagcgaagcgaacattctgagcacatttgaacaactgcaccagaacaaagatgaagtgtt 443

Query: 445 tga 447
           |||
Sbjct: 444 tga 446


 Score = 81 bits (210), Expect = 1e-15
 Identities = 43/45 (96%)
 Strand = Plus / Plus

Query: 27 ggaagtggtcaacgggcatacggatgttatctgctccaccagtat 71
          |||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 27 ggaagtggtcaacgggcatacggacgttatctgctcaaccagtat 71


 Score = 12 bits (31), Expect = 8e+05
 Identities = 6/6 (100%)
 Strand = Plus / Plus

Query: 72  ccgaca 77
           ||||||
Sbjct: 126 ccgaca 131

3) G2583_4403 in NC_013941


>NC_004337_P1|40|G36|24114266|NP_708776.1|Shigella_flexneri_2a_str._301|+|45815..46657|-|SF3002|hypothetical 
          Length = 843

 Score = 456 bits (1178), Expect = e-128
 Identities = 255/295 (86%)
 Strand = Plus / Plus

Query: 184 ctggaccgggcgatgaaacaggattttcactgcggctgctggctgatggagaaacctgaa 243
           |||||| |||| |||||||||||||||| |||||| |||||||||||||||||||| |||
Sbjct: 181 ctggactgggccatgaaacaggattttcgctgcggttgctggctgatggagaaaccggaa 240

Query: 244 accgcaatgaaagccatcacccgcaacctcgactgcgaaatctggcgtgacctgatgcaa 303
           |||||||||||||||||||| ||||| || ||  ||||| |||||||||| |||||||||
Sbjct: 241 accgcaatgaaagccatcacacgcaatcttgatcgcgaactctggcgtgatctgatgcaa 300

Query: 304 cgctccgggatgctgagtctgatggatgcacagggctaggatacatggtaccgctcactg 363
           || |||||||||||||||||||||||||| |||  |  ||| ||||||||| | ||||||
Sbjct: 301 cgttccgggatgctgagtctgatggatgcgcagacccgggacacatggtacaggtcactg 360

Query: 364 gagtacgataatattccggaaatcagcgaggcgaatatcatgaatgcattcaaacaactg 423
           || || |||||| |||||||||||||||| ||||| ||  |||   ||||  ||||||||
Sbjct: 361 gaatatgataattttccggaaatcagcgaagcgaacattctgagcacatttgaacaactg 420

Query: 424 caccagagtaaggatgaagtgtttgagcgtggggtgatcaacgtcttcagagggc 478
           |||||||  || |||||||||||||| || || |||||||||||||||| |||||
Sbjct: 421 caccagaacaaagatgaagtgtttgaacggggagtgatcaacgtcttcaaagggc 475


 Score = 335 bits (865), Expect = 4e-92
 Identities = 197/239 (82%)
 Strand = Plus / Plus

Query: 487 attacaaaaccaattccccctgtaaattcggcagtaaaattatcgtcaacaacttggtga 546
           ||||||||||||| || ||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 485 attacaaaaccaactcaccctgtaaatttggcagtaaaattatcgtcaacaacctggtga 544

Query: 547 gatggtacagatggagatttcatcttatcagtggaatgcaggcagatcgcttagctgacc 606
           | ||| || | ||| | |||||||||||||  ||    ||| | || ||  | |  ||||
Sbjct: 545 ggtgggaccggtgggggtttcatcttatcaccgggcaacagactgaccgactcgtcgacc 604

Query: 607 tggaaagaatgttgcatctgctcagcggtaaaccgctccccaacaaccgagggaatatca 666
           ||||||||||| | |||||| ||||||| |||||| ||||| ||||||| |  || ||||
Sbjct: 605 tggaaagaatgctacatctgttcagcggcaaaccgatccccgacaaccgggaaaacatca 664

Query: 667 ccattaatctggatgaccacctacagtccgttcagggtaaagagcgctatgaagacaag 725
           | |||  ||||||||  ||| | ||||||||||||||||||||||||||||||||| ||
Sbjct: 665 ctattcgtctggatggtcacatccagtccgttcagggtaaagagcgctatgaagacgag 723


 Score = 92 bits (236), Expect = 8e-19
 Identities = 50/53 (94%)
 Strand = Plus / Plus

Query: 22 cgtccggaagtggacaccgggcatacggacgttatctgctccaccagtatccg 74
          ||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct: 22 cgtccggaagtggtcaacgggcatacggacgttatctgctcaaccagtatccg 74


 Score = 35 bits (89), Expect = 1e-01
 Identities = 18/18 (100%)
 Strand = Plus / Plus

Query: 726 taaatactttaagaaggg 743
           ||||||||||||||||||
Sbjct: 735 taaatactttaagaaggg 752


 Score = 26 bits (66), Expect = 6e+01
 Identities = 19/21 (90%)
 Strand = Plus / Plus

Query: 747 gcacacatcacattcagaaag 767
           ||||||||||| |||| ||||
Sbjct: 757 gcacacatcactttca-aaag 776