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Homologs of escS gene of JQ747523

140

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) escS
( YP_003236102.1 )

T3SS structure protein EscS

NC_013364
(Escherichia coli 11128)

3e-25

2) escS
( YP_002331424.1 )

T3SS structure protein EscS

NC_011601
(Escherichia coli E2348/69)

3e-25

3) escS
( NP_290282.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

3e-25

4) ECO55CA74_21285
( YP_006161362.1 )

protein EscS

NC_017656
(Escherichia coli RM12579)

3e-25

5) ECs4582
( NP_312609.1 )

EscS

NC_002695
(Escherichia coli Sakai)

3e-25

6) escS
( YP_003080494.1 )

LEE-encoded type III secretion system factor

NC_013008
(Escherichia coli TW14359)

3e-25

7) CDCO157_4317
( YP_006315182.1 )

protein EscS

NC_017906
(Escherichia coli Xuzhou21)

3e-25

8) escS
( YP_003501888.1 )

EscS

NC_013941
(Escherichia coli CB9615)

4e-25

9) escS
( YP_003232139.1 )

T3SS structure protein EscS

NC_013361
(Escherichia coli 11368)

1e-24

10) escS
( YP_003223489.1 )

T3SS structure protein EscS

NC_013353
(Escherichia coli 12009)

1e-24

11) escS
( YP_003366516.1 )

T3SS structural protein EscS

NC_013716
(Citrobacter rodentium ICC168)

2e-20

12) SG1306
( YP_454986.1 )

type III secretion apparatus

NC_007712
(Sodalis glossinidius morsitans)

3e-13

13) sctS
( YP_003039884.1 )

type iii secretion component protein scts

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

7e-13

14) sctS
( NP_930978.1 )

Type III secretion component protein SctS

NC_005126
(Photorhabdus luminescens TTO1)

9e-13

15) ascS
( YP_001144303.1 )

AscS protein

NC_009350
(Aeromonas salmonicida A449)

7e-11

16) bscS
( YP_006967887.1 )

type III secretion protein

NC_019382
(Bordetella bronchiseptica 253)

1e-10

17) bscS
( YP_006899834.1 )

type III secretion protein

NC_018829
(Bordetella bronchiseptica MO149)

1e-10

18) bscS
( NP_888178.1 )

type III secretion protein

NC_002927
(Bordetella bronchiseptica RB50)

1e-10

19) bscS
( NP_884487.1 )

type III secretion protein

NC_002928
(Bordetella parapertussis 12822)

1e-10

20) bscS
( YP_006895377.1 )

type III secretion protein

NC_018828
(Bordetella parapertussis Bpp5)

1e-10

21) bscS
( YP_006625538.1 )

type III secretion protein

NC_018518
(Bordetella pertussis 18323)

2e-10

22) bscS
( YP_005590273.1 )

putative type III secretion protein

NC_017223
(Bordetella pertussis CS)

2e-10

23) bscS
( NP_880883.1 )

type III secretion protein

NC_002929
(Bordetella pertussis Tohama I)

2e-10

24) D781_3937
( YP_007346312.1 )

type III secretion protein, HrpO family

NC_020064
(Serratia marcescens FGI94)

2e-10

25) NH44784_014531
( YP_008028548.1 )

Type III secretion inner membrane protein (YscS,homologous to flagellar export components

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

3e-10

26) Ser39006_2920
( YP_008523302.1 )

type III secretion protein, HrpO family

NC_022268
(Serratia sp. ATCC 39006)

4e-10

27) Dvul_3009
( YP_961208.1 )

HrpO family type III secretion protein

NC_008741
(Desulfovibrio vulgaris DP4)

6e-10

28) invX
( YP_009143.1 )

HrpO family type III secretion protein

NC_005863
(Desulfovibrio vulgaris Hildenborough)

6e-10

29) DvMF_2414
( YP_002436823.1 )

type III secretion protein, HrpO family

NC_011769
(Desulfovibrio vulgaris Miyazaki F)

6e-10

30) Deval_3199
( YP_005703978.1 )

type III secretion protein, HrpO family

NC_017311
(Desulfovibrio vulgaris RCH1)

6e-10

31) escS
( NP_902278.1 )

type III secretion apparatus protein EscS

NC_005085
(Chromobacterium violaceum ATCC 12472)

6e-10

32) LILAB_19930
( YP_004666966.1 )

FliQ/MopD/SpaQ family protein

NC_015711
(Myxococcus fulvus HW-1)

1e-09

33) YE105_C0339
( YP_004296540.1 )

type III secretion system protein

NC_015224
(Yersinia enterocolitica 105.5R(r))

1e-09

34) Y11_35461
( YP_006007045.1 )

type III secretion inner membrane protein

NC_017564
(Yersinia enterocolitica Y11)

1e-09

35) hrcS
( NP_791221.1 )

type III secretion protein HrcS

NC_004578
(Pseudomonas syringae DC3000)

2e-09

36) ysaS
( YP_001007697.1 )

type III secretion apparatus protein

NC_008800
(Yersinia enterocolitica 8081)

2e-09

37) MYSTI_02839
( YP_007359839.1 )

FliQ/MopD/SpaQ family protein

NC_020126
(Myxococcus stipitatus DSM 14675)

2e-09

38) hscS
( YP_003811250.1 )

type III secretory pathway protein

NC_014366
(gamma proteobacterium HdN1)

5e-09

39) STAUR_3047
( YP_003952666.1 )

bacterial export protein fliq, family 3

NC_014623
(Stigmatella aurantiaca DW4/3-1)

5e-09

40) UWK_03089
( YP_007469271.1 )

flagellar biosynthetic protein FliQ

NC_020304
(Desulfocapsa sulfexigens DSM 10523)

6e-09

41) fliQ
( YP_005371583.1 )

FliQ/MopD/SpaQ family protein

NC_017030
(Corallococcus coralloides DSM 2259)

8e-09

42) SARI_01562
( YP_001570598.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

1e-08

43) S70_09790
( YP_006216509.1 )

type III secretion apparatus protein

NC_017731
(Providencia stuartii MRSN 2154)

1e-08

44) AMIS_2110
( YP_005459947.1 )

putative flagellar biosynthesis protein

NC_017093
(Actinoplanes missouriensis 431)

1e-08

45) fliQ
( YP_007332644.1 )

flagellar biosynthetic protein FliQ

NC_020059
(Rhizobium tropici CIAT 899)

2e-08

46) fliQ
( YP_008265619.1 )

flagellar biosynthesis protein FliQ

NC_021820
(Salmonella enterica 08-1736)

2e-08

47) ssaS
( YP_005237290.1 )

type III secretion system apparatus protein

NC_016856
(Salmonella enterica 14028S)

2e-08

48) ssaS
( YP_002226665.1 )

type III secretion protein

NC_011274
(Salmonella enterica 287/91)

2e-08

49) SBOV14166
( YP_008505287.1 )

type III secretion system apparatus protein

NC_022241
(Salmonella enterica 3114)

2e-08

50) SEEH1578_16335
( YP_008247326.1 )

type III secretion system protein SsaS

NC_021810
(Salmonella enterica 41578)

2e-08

51) SSPA1331
( YP_002142170.1 )

type III secretion protein

NC_011147
(Salmonella enterica AKU12601)

2e-08

52) ssaS
( YP_150684.1 )

type III secretion protein

NC_006511
(Salmonella enterica ATCC 9150)

2e-08

53) SU5_02036
( YP_006087670.1 )

Type III secretion inner membrane protein

NC_017623
(Salmonella enterica B182)

2e-08

54) fliQ
( YP_008308802.1 )

flagellar biosynthesis protein FliQ

NC_021844
(Salmonella enterica CFSAN000189)

2e-08

55) fliQ
( YP_008255383.1 )

flagellar biosynthesis protein FliQ

NC_021814
(Salmonella enterica CFSAN001921)

2e-08

56) CFSAN001992_04490
( YP_007470656.1 )

type III secretion system protein SsaS

NC_020307
(Salmonella enterica CFSAN001992)

2e-08

57) fliQ
( YP_008260610.1 )

flagellar biosynthesis protein FliQ

NC_021818
(Salmonella enterica CFSAN002050)

2e-08

58) fliQ
( YP_008249240.1 )

flagellar biosynthesis protein FliQ

NC_021812
(Salmonella enterica CFSAN002069)

2e-08

59) SeSA_A1516
( YP_002114433.2 )

secretion system apparatus protein SsaS

NC_011094
(Salmonella enterica CVM19633)

2e-08

60) STMMW_14251
( YP_005232479.1 )

putative type III secretion protein

NC_016854
(Salmonella enterica D23580)

2e-08

61) ssaS
( NP_460385.1 )

type III secretion system apparatus protein

NC_003197
(Salmonella enterica LT2)

2e-08

62) ssaS
( YP_002243725.1 )

type III secretion protein

NC_011294
(Salmonella enterica P125109)

2e-08

63) ssaS
( YP_002637867.1 )

type III secretion protein

NC_012125
(Salmonella enterica RKS4594)

2e-08

64) fliQ
( YP_008380651.1 )

flagellar biosynthesis protein FliQ

NC_021984
(Salmonella enterica S06004)

2e-08

65) ssaS
( YP_216428.1 )

secretion system apparatus protein SsaS

NC_006905
(Salmonella enterica SC-B67)

2e-08

66) SPAB_01905
( YP_001588128.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

2e-08

67) ssaS
( YP_005181264.1 )

putative type III secretion protein

NC_016810
(Salmonella enterica SL1344)

2e-08

68) SeHA_C1553
( YP_002045423.2 )

secretion system apparatus protein SsaS

NC_011083
(Salmonella enterica SL476)

2e-08

69) ssaS
( YP_005242321.1 )

type III secretion system apparatus protein

NC_016857
(Salmonella enterica ST4/74)

2e-08

70) STMDT12_C14360
( YP_005247132.1 )

putative type III secretion protein

NC_016860
(Salmonella enterica T000240)

2e-08

71) STU288_03420
( YP_007901789.1 )

type III secretion system protein SsaS

NC_021151
(Salmonella enterica U288)

2e-08

72) ssaS
( YP_005251924.1 )

type III secretion system apparatus protein

NC_016863
(Salmonella enterica UK-1)

2e-08

73) fliQ
( YP_468228.1 )

flagellar biosynthesis protein FliQ

NC_007761
(Rhizobium etli CFN 42)

2e-08

74) fliQ
( YP_008363479.1 )

flagellar biosynthesis protein FliQ

NC_021905
(Rhizobium etli Mim1)

2e-08

75) fliQ
( YP_005187667.1 )

flagellar biosynthetic protein FliQ

NC_016812
(Sinorhizobium fredii HH103)

2e-08

76) fliQ
( YP_002824851.1 )

flagellar biosynthesis protein FliQ

NC_012587
(Sinorhizobium fredii NGR234)

2e-08

77) ssaS
( NP_456108.1 )

putative type III secretion protein

NC_003198
(Salmonella enterica CT18)

3e-08

78) ssaS
( NP_805091.1 )

type III secretion protein

NC_004631
(Salmonella enterica Ty2)

3e-08

79) TY21A_06545
( YP_007925613.1 )

putative type III secretion protein

NC_021176
(Salmonella enterica Ty21a)

3e-08

80) Sked_31050
( YP_003315836.1 )

flagellar biosynthetic protein FliQ

NC_013521
(Sanguibacter keddieii DSM 10542)

3e-08

81) fliQ
( YP_766344.1 )

flagellar biosynthesis protein FliQ

NC_008380
(Rhizobium leguminosarum 3841)

3e-08

82) fliQ
( YP_002974226.1 )

flagellar biosynthesis protein FliQ

NC_012850
(Rhizobium leguminosarum WSM1325)

3e-08

83) fliQ
( YP_001976930.1 )

flagellar biosynthesis protein FliQ

NC_010994
(Rhizobium etli CIAT 652)

6e-08

84) Mesau_01994
( YP_007303814.1 )

flagellar biosynthetic protein FliQ

NC_019973
(Mesorhizobium australicum WSM2073)

1e-07

85) Mesop_1988
( YP_004610563.1 )

flagellar biosynthetic protein FliQ

NC_015675
(Mesorhizobium opportunistum WSM2075)

1e-07

86) sctS
( YP_007365650.1 )

type III secretion system protein

NC_020127
(Lawsonia intracellularis N343)

1e-07

87) yscS
( YP_594924.1 )

translocation protein in type III secretion

NC_008011
(Lawsonia intracellularis PHE/MN1-00)

1e-07

88) fliQ
( NP_104165.1 )

flagellar biosynthesis protein FliQ

NC_002678
(Mesorhizobium loti MAFF303099)

1e-07

89) Desku_1771
( YP_004517140.1 )

flagellar biosynthetic protein FliQ

NC_015573
(Desulfotomaculum kuznetsovii DSM 6115)

2e-07

90) fliQ
( YP_007550617.1 )

flagellar biosynthesis protein

NC_020516
(Azoarcus sp. KH32C)

2e-07

91) Clo1100_2394
( YP_005148371.1 )

flagellar biosynthetic protein FliQ

NC_016791
(Clostridium sp. BNL1100)

2e-07

92) fliQ
( YP_001356104.1 )

flagellar biosynthetic protein FliQ

NC_009662
(Nitratiruptor sp. SB155-2)

2e-07

93) Rru_A2823
( YP_427907.1 )

flagellar biosynthesis protein FliQ

NC_007643
(Rhodospirillum rubrum ATCC 11170)

4e-07

94) Btus_1510
( YP_003589367.1 )

flagellar biosynthetic protein FliQ

NC_014098
(Kyrpidia tusciae DSM 2912)

5e-07

95) ssaS
( YP_002924939.1 )

type III secretion system apparatus protein

NC_012751
(Candidatus Hamiltonella defensa T5A)

1e-06

96) Neut_2060
( YP_748248.1 )

flagellar biosynthetic protein FliQ

NC_008344
(Nitrosomonas eutropha C91)

1e-06

97) xsaX
( YP_003375995.1 )

xanthomonas secretion apparatus protein

NC_013722
(Xanthomonas albilineans GPE PC73)

1e-06

98) Pmob_1395
( YP_001568422.1 )

flagellar biosynthetic protein FliQ

NC_010003
(Petrotoga mobilis SJ95)

3e-06

99) Despr_2237
( YP_004195672.1 )

flagellar biosynthetic protein FliQ

NC_014972
(Desulfobulbus propionicus DSM 2032)

3e-06

100) PSEBR_a5381
( YP_004356891.1 )

type III secretion protein

NC_015379
(Pseudomonas brassicacearum NFM421)

3e-06

101) hrcS
( YP_005210968.1 )

protein HrcS

NC_016830
(Pseudomonas fluorescens F113)

3e-06

102) fliQ
( YP_001754379.1 )

flagellar biosynthesis protein FliQ

NC_010505
(Methylobacterium radiotolerans JCM 2831)

4e-06

103) hrcS
( YP_003774222.1 )

type III secretion HrcS protein

NC_014323
(Herbaspirillum seropedicae SmR1)

5e-06

104) fliQ
( YP_005675544.1 )

flagellar biosynthesis protein FliQ

NC_017297
(Clostridium botulinum 230613)

2e-05

105) fliQ
( YP_002863639.1 )

flagellar biosynthesis protein FliQ

NC_012658
(Clostridium botulinum 657)

2e-05

106) fliQ
( YP_001384892.1 )

flagellar biosynthesis protein FliQ

NC_009697
(Clostridium botulinum ATCC 19397)

2e-05

107) fliQ
( YP_001255146.1 )

flagellar biosynthesis protein FliQ

NC_009495
(Clostridium botulinum ATCC 3502)

2e-05

108) fliQ
( YP_001388361.1 )

flagellar biosynthesis protein FliQ

NC_009698
(Clostridium botulinum Hall)

2e-05

109) fliQ
( YP_002805151.1 )

flagellar biosynthesis protein FliQ

NC_012563
(Clostridium botulinum Kyoto)

2e-05

110) fliQ
( YP_001391948.1 )

flagellar biosynthesis protein FliQ

NC_009699
(Clostridium botulinum Langeland)

2e-05

111) yscS
( YP_004677244.1 )

Yop proteins translocation protein S

NC_015717
(Hyphomicrobium sp. MC1)

2e-05

112) MXAN_2448
( YP_630668.1 )

FliQ/MopD/SpaQ family protein

NC_008095
(Myxococcus xanthus DK 1622)

2e-05

113) Krad_1667
( YP_001361417.1 )

export protein FliQ family 3

NC_009664
(Kineococcus radiotolerans SRS30216)

3e-05

114) H04402_02742
( YP_005679280.1 )

flagellar biosynthesis protein FliQ

NC_017299
(Clostridium botulinum H04402 065)

4e-05

115) fliQ
( YP_001787968.1 )

flagellar biosynthesis protein FliQ

NC_010520
(Clostridium botulinum Loch Maree)

4e-05

116) fliQ
( YP_001782264.1 )

flagellar biosynthesis protein FliQ

NC_010516
(Clostridium botulinum Okra)

4e-05

117) spaQ
( YP_002924279.1 )

type III needle complex export protein

NC_012751
(Candidatus Hamiltonella defensa T5A)

5e-05

118) Thethe_01404
( YP_007298743.1 )

flagellar biosynthetic protein FliQ

NC_019970
(Thermoanaerobacterium thermosaccharolyticum M0795)

7e-05

119) Tsac_1797
( YP_006392402.1 )

flagellar biosynthetic protein FliQ

NC_017992
(Thermoanaerobacterium saccharolyticum JW/SL-YS485)

1e-04

120) Thexy_1316
( YP_004471021.1 )

flagellar biosynthetic protein FliQ

NC_015555
(Thermoanaerobacterium xylanolyticum LX-11)

1e-04

121) Thein_0184
( YP_004625033.1 )

flagellar biosynthetic protein FliQ

NC_015681
(Thermodesulfatator indicus DSM 15286)

2e-04

122) Tthe_1439
( YP_003852037.1 )

flagellar biosynthetic protein FliQ

NC_014410
(Thermoanaerobacterium thermosaccharolyticum DSM 571)

2e-04

123) M635_04085
( YP_008293743.1 )

flagellar biosynthesis protein FliQ

NC_021834
(Campylobacter jejuni 32488)

3e-04

124) fliQ
( YP_001001318.1 )

flagellar biosynthesis protein FliQ

NC_008787
(Campylobacter jejuni 81-176)

3e-04

125) fliQ
( YP_001483150.1 )

flagellar biosynthesis protein FliQ

NC_009839
(Campylobacter jejuni 81116)

3e-04

126) fliQ
( YP_005656938.1 )

flagellar biosynthetic protein

NC_017279
(Campylobacter jejuni IA3902)

3e-04

127) fliQ
( YP_005658551.1 )

Flagellar biosynthetic protein FliQ

NC_017280
(Campylobacter jejuni M1)

3e-04

128) fliQ
( YP_002345043.1 )

flagellar biosynthesis protein FliQ

NC_002163
(Campylobacter jejuni NCTC 11168)

3e-04

129) fliQ
( YP_006633790.1 )

flagellar biosynthesis protein FliQ

NC_018521
(Campylobacter jejuni NCTC 11168-BN148)

3e-04

130) fliQ
( YP_006858656.1 )

flagellar biosynthesis protein FliQ

NC_018709
(Campylobacter jejuni PT14)

3e-04

131) fliQ
( YP_179817.1 )

flagellar biosynthesis protein FliQ

NC_003912
(Campylobacter jejuni RM1221)

3e-04

132) fliQ
( YP_005660290.1 )

Flagellar biosynthesis protein fliQ

NC_017281
(Campylobacter jejuni S3)

3e-04

133) fliQ
( YP_008563017.1 )

flagellar biosynthesis protein FliQ

NC_022362
(jejuni jejuni 00-2425)

3e-04

134) fliQ
( YP_008541265.1 )

flagellar biosynthesis protein FliQ

NC_022352
(jejuni jejuni 00-2426)

3e-04

135) fliQ
( YP_008539579.1 )

flagellar biosynthesis protein FliQ

NC_022351
(jejuni jejuni 00-2538)

3e-04

136) fliQ
( YP_008542984.1 )

flagellar biosynthesis protein FliQ

NC_022353
(jejuni jejuni 00-2544)

3e-04

137) fliQ
( YP_001398955.1 )

flagellar biosynthesis protein FliQ

NC_009707
(Campylobacter jejuni 269.97)

6e-04

138) fliQ
( YP_003718694.1 )

flagellar biosynthesis protein FliQ

NC_014246
(Mobiluncus curtisii ATCC 43063)

0.004

139) Aaci_1407
( YP_003184823.1 )

flagellar biosynthetic protein FliQ

NC_013205
(Alicyclobacillus acidocaldarius DSM 446)

1.1

140) TC41_1344
( YP_005517800.1 )

flagellar biosynthetic protein FliQ

NC_017167
(Alicyclobacillus acidocaldarius Tc-4-1)

1.1

• Sequence Alignments

1) escS in NC_013364


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score =  107 bits (390),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 73/87 (84%), Positives = 85/87 (98%), Gaps = 0/87 (0%)

Query  1   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  60
           MDTGY+VQ+CVQ +WIIF+LSLPTV+AASVIGI+ISL+QAITQLQDQTLPFLLKIIAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLALTYHWMGTTIINFSSIIFEMIPKV  87
           TLALTYHWMG T+INF+SII+E+IP+V
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

2) escS in NC_011601


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score =  107 bits (390),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 73/87 (84%), Positives = 85/87 (98%), Gaps = 0/87 (0%)

Query  1   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  60
           MDTGY+VQ+CVQ +WIIF+LSLPTV+AASVIGI+ISL+QAITQLQDQTLPFLLKIIAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLALTYHWMGTTIINFSSIIFEMIPKV  87
           TLALTYHWMG T+INF+SII+E+IP+V
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

3) escS in NC_002655


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score =  107 bits (390),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 73/87 (84%), Positives = 85/87 (98%), Gaps = 0/87 (0%)

Query  1   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  60
           MDTGY+VQ+CVQ +WIIF+LSLPTV+AASVIGI+ISL+QAITQLQDQTLPFLLKIIAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLALTYHWMGTTIINFSSIIFEMIPKV  87
           TLALTYHWMG T+INF+SII+E+IP+V
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

4) ECs4582 in NC_002695


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score =  107 bits (390),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 73/87 (84%), Positives = 85/87 (98%), Gaps = 0/87 (0%)

Query  1   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  60
           MDTGY+VQ+CVQ +WIIF+LSLPTV+AASVIGI+ISL+QAITQLQDQTLPFLLKIIAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLALTYHWMGTTIINFSSIIFEMIPKV  87
           TLALTYHWMG T+INF+SII+E+IP+V
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

5) escS in NC_013008


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score =  107 bits (390),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 73/87 (84%), Positives = 85/87 (98%), Gaps = 0/87 (0%)

Query  1   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  60
           MDTGY+VQ+CVQ +WIIF+LSLPTV+AASVIGI+ISL+QAITQLQDQTLPFLLKIIAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLALTYHWMGTTIINFSSIIFEMIPKV  87
           TLALTYHWMG T+INF+SII+E+IP+V
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

6) ECO55CA74_21285 in NC_017656


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score =  107 bits (390),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 73/87 (84%), Positives = 85/87 (98%), Gaps = 0/87 (0%)

Query  1   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  60
           MDTGY+VQ+CVQ +WIIF+LSLPTV+AASVIGI+ISL+QAITQLQDQTLPFLLKIIAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLALTYHWMGTTIINFSSIIFEMIPKV  87
           TLALTYHWMG T+INF+SII+E+IP+V
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

7) CDCO157_4317 in NC_017906


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score =  107 bits (390),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 73/87 (84%), Positives = 85/87 (98%), Gaps = 0/87 (0%)

Query  1   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  60
           MDTGY+VQ+CVQ +WIIF+LSLPTV+AASVIGI+ISL+QAITQLQDQTLPFLLKIIAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLALTYHWMGTTIINFSSIIFEMIPKV  87
           TLALTYHWMG T+INF+SII+E+IP+V
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

8) escS in NC_013941


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score =  107 bits (389),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 73/87 (84%), Positives = 85/87 (98%), Gaps = 0/87 (0%)

Query  2   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  61
           MDTGY+VQ+CVQ +WIIF+LSLPTV+AASVIGI+ISL+QAITQLQDQTLPFLLKIIAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  62  TLALTYHWMGTTIINFSSIIFEMIPKV  88
           TLALTYHWMG T+INF+SII+E+IP+V
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

9) escS in NC_013353


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score =  105 bits (383),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 72/87 (83%), Positives = 85/87 (98%), Gaps = 0/87 (0%)

Query  1   METGYFVQLCVQTLWIIFILSLPTviaasvvgiiislvQAITQLQDQTLPFLLKIIAVFA  60
           M+TGY+VQ+CVQ LWIIF+LSLPTV+AASV+GI+ISL+QAITQLQDQTLPFLLKIIAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLALTYHWMGTTIINFSSIIFEMIPKV  87
           TLALTYHWMG T+INF+SII+E+IP+V
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

10) escS in NC_013361


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score =  105 bits (383),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 72/87 (83%), Positives = 85/87 (98%), Gaps = 0/87 (0%)

Query  1   METGYFVQLCVQTLWIIFILSLPTviaasvvgiiislvQAITQLQDQTLPFLLKIIAVFA  60
           M+TGY+VQ+CVQ LWIIF+LSLPTV+AASV+GI+ISL+QAITQLQDQTLPFLLKIIAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLALTYHWMGTTIINFSSIIFEMIPKV  87
           TLALTYHWMG T+INF+SII+E+IP+V
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

11) escS in NC_013716


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 92.0 bits (330),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 74/87 (86%), Positives = 85/87 (98%), Gaps = 0/87 (0%)

Query  1   MGTGYFVQLCVQTLWIIFILSLPtviaasvigiiisliqaitqlqDQTLPFLLKIIAVFA  60
           M+TGY+VQ+CVQ LWIIF+LSLPTV+AASVIGI+ISLIQAITQLQDQTLPFLLKIIAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLALTYHWMGTTIINFSSIIFEMIPKV  87
           TLALTYHWMG T+INF+SII+E+IP+V
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

12) SG1306 in NC_007712


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 68.1 bits (239),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 36/78 (47%), Positives = 59/78 (76%), Gaps = 0/78 (0%)

Query  1   MNDAALTHLVTQLMWIVLITSLPVVLVASAVGILVSLFQALTQIQDQTLQFMIKLLAVAI  60
           M+ + L ++  Q++WI+++ SLP VL AS +GI++SL+QA+TQ+QDQTL F++K++AV  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMASYPWLGGILLGYTR  78
           TL  +Y W+G  L+ +T 
Sbjct  61  TLALTYHWMGVTLINFTS  78

13) VPBB_1533 in NC_019955


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 67.1 bits (235),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 37/87 (43%), Positives = 67/87 (78%), Gaps = 0/87 (0%)

Query  1   MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII  60
           M+ + ++++  Q L ++++LSLP +L A+++G ++SLIQA+TQ+Q+QTL F++K+IAV+ 
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLFITTQWLGAELHAFASLALDKIPQI  87
           TL +T +W+G  L  F+S+  + IPQ+
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

14) M636_13700 in NC_021848


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 67.1 bits (235),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 37/87 (43%), Positives = 67/87 (78%), Gaps = 0/87 (0%)

Query  1   MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII  60
           M+ + ++++  Q L ++++LSLP +L A+++G ++SLIQA+TQ+Q+QTL F++K+IAV+ 
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLFITTQWLGAELHAFASLALDKIPQI  87
           TL +T +W+G  L  F+S+  + IPQ+
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

15) M634_09100 in NC_021847


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 67.1 bits (235),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 37/87 (43%), Positives = 67/87 (78%), Gaps = 0/87 (0%)

Query  1   MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII  60
           M+ + ++++  Q L ++++LSLP +L A+++G ++SLIQA+TQ+Q+QTL F++K+IAV+ 
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLFITTQWLGAELHAFASLALDKIPQI  87
           TL +T +W+G  L  F+S+  + IPQ+
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

16) VP1673 in NC_004603


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 67.1 bits (235),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 37/87 (43%), Positives = 67/87 (78%), Gaps = 0/87 (0%)

Query  1   MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII  60
           M+ + ++++  Q L ++++LSLP +L A+++G ++SLIQA+TQ+Q+QTL F++K+IAV+ 
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLFITTQWLGAELHAFASLALDKIPQI  87
           TL +T +W+G  L  F+S+  + IPQ+
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

17) sctS in NC_012962


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 66.8 bits (234),  Expect = 7e-13, Method: Compositional matrix adjust.
 Identities = 37/85 (44%), Positives = 64/85 (76%), Gaps = 0/85 (0%)

Query  1   MSNADILHFTSQSLWLVLILSLPPVLMAAVVGTLVSLIQALTQIQEQTLGFVIKLIAVII  60
           M  + ++++  Q LW++++LSLP VL A+V+G ++SLIQA+TQ+Q+QTL F++K+IAV+ 
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLFATATWLGNELYSFANMAFSKVP  85
           TL  T  W+G  L +F+++ +  +P
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

18) sctS in NC_005126


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 66.3 bits (232),  Expect = 9e-13, Method: Compositional matrix adjust.
 Identities = 37/87 (43%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  1   MSNADILHFTSQSLWLVLILSLPPVLMAAAVGTLVSLIQALTQIQEQTLGFVIKLIAVII  60
           M  + ++++  Q LW++++LSLP VL A+ +G ++SLIQA+TQ+Q+QTL F++K+IAV+ 
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLFATATWLGNELYSFANMTFLKVPQI  87
           TL  T  W+G  L +F+++ +  +PQ+
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

19) M892_04540 in NC_022269


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 65.5 bits (229),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 35/87 (41%), Positives = 67/87 (78%), Gaps = 0/87 (0%)

Query  1   MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLVQALTQVQEQTLGFVVKLIAVII  60
           M+ + ++++  Q L ++++LSLP +L A+++G ++SL+QA+TQ+Q+QTL F++K+IAV+ 
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLFVTTQWLGAELHSFATLTLGKIPQI  87
           TL +T +W+G  L +F+++    IPQ+
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

20) VIBHAR_01725 in NC_009783


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 65.5 bits (229),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 35/87 (41%), Positives = 67/87 (78%), Gaps = 0/87 (0%)

Query  1   MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLVQALTQVQEQTLGFVVKLIAVII  60
           M+ + ++++  Q L ++++LSLP +L A+++G ++SL+QA+TQ+Q+QTL F++K+IAV+ 
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLFVTTQWLGAELHSFATLTLGKIPQI  87
           TL +T +W+G  L +F+++    IPQ+
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

21) N646_0741 in NC_022349


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 65.0 bits (227),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 37/87 (43%), Positives = 67/87 (78%), Gaps = 0/87 (0%)

Query  1   MHSAEIIHFTTQALTLVLYLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII  60
           M+++ ++++  Q L +++ LSLP +L A+++G ++SLIQA+TQ+Q+QTL F++K+IAV+ 
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLFVTTQWLGAELHAFASLAMDKIPQI  87
           TL +T +W+G  L  F+S+  + IPQ+
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

22) VEA_003361 in NC_013456


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 65.0 bits (227),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 37/87 (43%), Positives = 67/87 (78%), Gaps = 0/87 (0%)

Query  1   MHSAEIIHFTTQALTLVLYLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII  60
           M+++ ++++  Q L +++ LSLP +L A+++G ++SLIQA+TQ+Q+QTL F++K+IAV+ 
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLFVTTQWLGAELHAFASLAMDKIPQI  87
           TL +T +W+G  L  F+S+  + IPQ+
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

23) ascS in NC_009350


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 60.0 bits (208),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 35/87 (41%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MSHADILHFTSQALWLVLILSMPPVLVAALVGTLVSLLQALTQIQEQTLGFVAKLIAVVI  60
           M  + ++++  Q LW++++LS+P VL A+++G ++SL+QA+TQ+Q+QTL F+ K+IAV  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLFATTAWLGNELYSFANMVLFKVPQI  87
           TL  T  W+G  L +F++++   +PQ+
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

24) bscS in NC_019382


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 36/87 (42%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  4   MQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  63
           M+T  LV +  Q L +++ LSLP +  A+++G ++SL+QA+TQ+Q+QTL+F +K+IAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  64  TLMLAARWISAEIYNFTIAVFDAFHRI  90
           TL L+ +W++  + NFT  +++ + ++
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

25) bscS in NC_018829


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 36/87 (42%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  4   MQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  63
           M+T  LV +  Q L +++ LSLP +  A+++G ++SL+QA+TQ+Q+QTL+F +K+IAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  64  TLMLAARWISAEIYNFTIAVFDAFHRI  90
           TL L+ +W++  + NFT  +++ + ++
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

26) bscS in NC_002927


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 36/87 (42%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  4   MQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  63
           M+T  LV +  Q L +++ LSLP +  A+++G ++SL+QA+TQ+Q+QTL+F +K+IAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  64  TLMLAARWISAEIYNFTIAVFDAFHRI  90
           TL L+ +W++  + NFT  +++ + ++
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

27) bscS in NC_002928


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 36/87 (42%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  4   MQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  63
           M+T  LV +  Q L +++ LSLP +  A+++G ++SL+QA+TQ+Q+QTL+F +K+IAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  64  TLMLAARWISAEIYNFTIAVFDAFHRI  90
           TL L+ +W++  + NFT  +++ + ++
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

28) bscS in NC_018828


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 36/87 (42%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  4   MQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  63
           M+T  LV +  Q L +++ LSLP +  A+++G ++SL+QA+TQ+Q+QTL+F +K+IAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  64  TLMLAARWISAEIYNFTIAVFDAFHRI  90
           TL L+ +W++  + NFT  +++ + ++
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

29) bscS in NC_018518


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 58.4 bits (202),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 35/87 (41%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MQTQDLVSFMTQALYLVLWLSLPPIAVVAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  60
           M+T  LV +  Q L +++ LSLP +   +++G ++SL+QA+TQ+Q+QTL+F +K+IAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMLAARWISAEIYNFTIAVFDAFHRI  87
           TL L+ +W++  + NFT  +++ + ++
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

30) bscS in NC_017223


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 58.4 bits (202),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 35/87 (41%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MQTQDLVSFMTQALYLVLWLSLPPIAVVAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  60
           M+T  LV +  Q L +++ LSLP +   +++G ++SL+QA+TQ+Q+QTL+F +K+IAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMLAARWISAEIYNFTIAVFDAFHRI  87
           TL L+ +W++  + NFT  +++ + ++
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

31) bscS in NC_002929


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 58.4 bits (202),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 35/87 (41%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MQTQDLVSFMTQALYLVLWLSLPPIAVVAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  60
           M+T  LV +  Q L +++ LSLP +   +++G ++SL+QA+TQ+Q+QTL+F +K+IAVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMLAARWISAEIYNFTIAVFDAFHRI  87
           TL L+ +W++  + NFT  +++ + ++
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

32) D781_3937 in NC_020064


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 58.2 bits (201),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 35/76 (47%), Positives = 57/76 (75%), Gaps = 0/76 (0%)

Query  9   QAMLLVVLLSAPPLIVAVLVGVITSLLQAAMQLQDQTLPFCLKLVAVGVTLALTGRWLGV  68
           Q + ++ LLS P ++ A ++G++ SL+QA  QLQDQTLPF LK++AV  TLALT +W+GV
Sbjct  12  QMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGV  71

Query  69  ELLQLTQNAFAMMSRV  84
            L+++T   + ++++V
Sbjct  72  TLINFTSIIYEIIPQV  87

33) NH44784_014531 in NC_021285


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 58.2 bits (201),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 35/80 (44%), Positives = 59/80 (74%), Gaps = 4/80 (5%)

Query  8   SYMTQALYLVLW----LSLPPIAVAAIVGTLFSLFQALTQIQEQTLSFAVKLIAVFATIM  63
           +Y+ Q    +LW    LSLP +  A+++G ++SL+QA+TQ+Q+QTL+F +K+IAVFAT+ 
Sbjct  4   GYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLA  63

Query  64  LTARWLSAELYNFTISVFDL  83
           LT +W++  L NFT  ++++
Sbjct  64  LTYHWMGVTLINFTSIIYEI  83

34) Ser39006_2920 in NC_022268


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 57.6 bits (199),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 31/71 (44%), Positives = 54/71 (77%), Gaps = 0/71 (0%)

Query  13  LVVMLSAPPLLAAVMVGVLVSLIQAVMQLQDQTLPFAVKLVSVGLVLAMTGRWIGSELIQ  72
           ++ +LS P +LAA ++G+++SLIQA+ QLQDQTLPF +K+++V   LA+T +W+G  LI+
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  73  LAVTAFSMIEH  83
           ++   + +I +
Sbjct  76  FTSIIYEIIPQ  86

35) Dvul_3009 in NC_008741


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 57.1 bits (197),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 37/72 (52%), Positives = 53/72 (74%), Gaps = 0/72 (0%)

Query  9   AVKALYLVLMLSMPPIIVASVVGIVLSLIQAITQLQEQTLTFGVKLIAVVLTLFLMGGWF  68
            V+ L ++++LS+P ++ ASV+GIV+SLIQAITQLQ+QTL F +K+IAV  TL L   W 
Sbjct  10  CVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWM  69

Query  69  GGELLRFADEIF  80
           G  L+ F+  I+
Sbjct  70  GVTLINFTSIIY  81

36) invX in NC_005863


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 57.1 bits (197),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 37/72 (52%), Positives = 53/72 (74%), Gaps = 0/72 (0%)

Query  9   AVKALYLVLMLSMPPIIVASVVGIVLSLIQAITQLQEQTLTFGVKLIAVVLTLFLMGGWF  68
            V+ L ++++LS+P ++ ASV+GIV+SLIQAITQLQ+QTL F +K+IAV  TL L   W 
Sbjct  10  CVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWM  69

Query  69  GGELLRFADEIF  80
           G  L+ F+  I+
Sbjct  70  GVTLINFTSIIY  81

37) DvMF_2414 in NC_011769


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 57.1 bits (197),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 37/72 (52%), Positives = 53/72 (74%), Gaps = 0/72 (0%)

Query  9   AVKALYLVLMLSMPPIVVASVIGILISLVQAITQLQEQTLTFGVKLIAVVLTLFLMGGWF  68
            V+ L ++++LS+P ++ ASVIGI+ISL+QAITQLQ+QTL F +K+IAV  TL L   W 
Sbjct  10  CVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWM  69

Query  69  GAELLRFADEIF  80
           G  L+ F+  I+
Sbjct  70  GVTLINFTSIIY  81

38) Deval_3199 in NC_017311


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 57.1 bits (197),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 37/72 (52%), Positives = 53/72 (74%), Gaps = 0/72 (0%)

Query  9   AVKALYLVLMLSMPPIIVASVVGIVLSLIQAITQLQEQTLTFGVKLIAVVLTLFLMGGWF  68
            V+ L ++++LS+P ++ ASV+GIV+SLIQAITQLQ+QTL F +K+IAV  TL L   W 
Sbjct  10  CVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWM  69

Query  69  GGELLRFADEIF  80
           G  L+ F+  I+
Sbjct  70  GVTLINFTSIIY  81

39) escS in NC_005085


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 57.1 bits (197),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 42/87 (49%), Positives = 70/87 (81%), Gaps = 0/87 (0%)

Query  1   MSEAMIAQLATQMMWlvlllslpvvvvasfvgvlvslvQALTQVQDQTVQFLVKLLAVSV  60
           M  + + Q+  QM+W+++LLSLP V+ AS +G+++SL+QA+TQ+QDQT+ FL+K++AV  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLAMTYHWMGDVLLNYAGLAFDQITQM  87
           TLA+TYHWMG  L+N++++ ++ I Q+
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQV  87

40) LILAB_19930 in NC_015711


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 56.1 bits (193),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 32/77 (42%), Positives = 55/77 (72%), Gaps = 0/77 (0%)

Query  7   ITQEALFLVLVASAPPVLMSLLVGFIISLFQATTQIQEQTLTFAPKVVAVFGILALAGPW  66
           I  + L ++++ S P VL + ++G++ISL+QA TQ+Q+QTL F  K++AVF+ LAL+  W
Sbjct  9   ICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHW  68

Query  67  IGSQLVRFTFHVFDRFP  83
           +G  L+ FT  +++ +P
Sbjct  69  MGVTLINFTSIIYEIIP  85

41) YE105_C0339 in NC_015224


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 55.8 bits (192),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 46/81 (57%), Positives = 67/81 (83%), Gaps = 0/81 (0%)

Query  1   MSNAIVVHLATQLLWIvlllsmpvvvvasvvgivvsllQALTQIQDQTLQFLIKLLAVSA  60
           M  + +V++  Q+LWI++LLS+P V+ ASV+GIV+SL+QA+TQ+QDQTL FL+K++AV A
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLLITYHWMGSTLLNYTQQTF  81
           TL +TYHWMG TL+N+T   +
Sbjct  61  TLALTYHWMGVTLINFTSIIY  81

42) Y11_35461 in NC_017564


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 55.8 bits (192),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 46/81 (57%), Positives = 67/81 (83%), Gaps = 0/81 (0%)

Query  1   MSNAIVVHLATQLLWIvlllsmpvvvvasvvgivvsllQALTQIQDQTLQFLIKLLAVSA  60
           M  + +V++  Q+LWI++LLS+P V+ ASV+GIV+SL+QA+TQ+QDQTL FL+K++AV A
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLLITYHWMGSTLLNYTQQTF  81
           TL +TYHWMG TL+N+T   +
Sbjct  61  TLALTYHWMGVTLINFTSIIY  81

43) hrcS in NC_004578


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 55.8 bits (192),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 31/75 (42%), Positives = 57/75 (76%), Gaps = 0/75 (0%)

Query  9   QGMFLVVILTAPPLGVAVLVGVITSLLQALMQIQDQTLPFGIKLAAVGMTLAMTGRWIGV  68
           Q + ++ +L+ P +  A ++G++ SL+QA+ Q+QDQTLPF +K+ AV  TLA+T +W+GV
Sbjct  12  QMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGV  71

Query  69  ELIQFINMAFDLIAR  83
            LI+F ++ +++I++
Sbjct  72  TLINFTSIIYEIIPQ  86

44) ysaS in NC_008800


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 55.5 bits (191),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 30/71 (43%), Positives = 57/71 (81%), Gaps = 1/71 (1%)

Query  12  MLLIVLLSAIP-VMVATVVGLLIGLIQTVTQLQEQTLPFGIKLLAVFGSLFMISGWLSDK  70
           ML I++L ++P V+ A+V+G++I+LIQ++TQLQ+QTLPF +K++AVF++L +   W++  
Sbjct  13  MLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVT  72

Query  71  VMNYATEVLAI  81
           ++N+++ +  I
Sbjct  73  LINFTSIIYEI  83

45) MYSTI_02839 in NC_020126


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 55.0 bits (189),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 32/77 (42%), Positives = 55/77 (72%), Gaps = 0/77 (0%)

Query  7   ITQEALFLVLVVSAPPVLMSLLVGFIISLFQATTQIQEQTLTFAPKVIIVFGVLAMTGPW  66
           I  + L +++++S P VL + ++G++ISL+QA TQ+Q+QTL F  K+I VF+ LA+T  W
Sbjct  9   ICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHW  68

Query  67  IGSQLMRFTFHVFDRFP  83
           +G  L+ FT  +++ +P
Sbjct  69  MGVTLINFTSIIYEIIP  85

46) hscS in NC_014366


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 54.0 bits (185),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 32/79 (41%), Positives = 59/79 (75%), Gaps = 0/79 (0%)

Query  6   IQLTQEALWLLLMLSAPIILGAAASGLVIAFLQAVTQLQEQTLGFAVKLVVVSALIFLTS  65
           +Q+  + LW++++LS P +L+A+  G+VI+++QA+TQLQ+QTL F +K++ V A + LT 
Sbjct  7   VQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTY  66

Query  66  GLVGETLFQYASRIFTSFP  84
             +G TL++++S I+  +P
Sbjct  67  HWMGVTLINFTSIIYEIIP  85

47) STAUR_3047 in NC_014623


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 54.0 bits (185),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 31/77 (41%), Positives = 54/77 (71%), Gaps = 0/77 (0%)

Query  7   ITQQALFLVLIVSAPPVLISLVVGFIIALFQATTQIQEQTLTFAPKVVIVFIVLAMAGPW  66
           I  Q L +++++S P VL + V+G++I+L+QA TQ+Q+QTL F  K++ VF  LA++  W
Sbjct  9   ICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHW  68

Query  67  IGHQLLRFTFHVFDRFP  83
           +G  L+ FT  +++ +P
Sbjct  69  MGVTLINFTSIIYEIIP  85

48) UWK_03089 in NC_020304


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 30/69 (44%), Positives = 50/69 (73%), Gaps = 0/69 (0%)

Query  1   MTDEFVVDICRKAIQTALMISGPMLLAGMIIGLIVSIFQATTQINEQTLTFIPKIIAVFI  60
           M   ++V+IC + +   +++S P +LA+ +IG+++S++QA TQ+++QTL F+ KIIAVF 
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLLLMTPWM  69
           TL L   WM
Sbjct  61  TLALTYHWM  69

49) bsaX in NC_006349


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 49/68 (73%), Gaps = 0/68 (0%)

Query  14  LVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLA  73
           +++LL  + V  A+V+G+ I+L+Q++TQLQ+QTLPF LK++AVF+ L +   W G  L+ 
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  74  FATEMLSI  81
           F++ +  I
Sbjct  76  FTSIIYEI  83

50) bsaX in NC_008835


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 49/68 (73%), Gaps = 0/68 (0%)

Query  14  LVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLA  73
           +++LL  + V  A+V+G+ I+L+Q++TQLQ+QTLPF LK++AVF+ L +   W G  L+ 
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  74  FATEMLSI  81
           F++ +  I
Sbjct  76  FTSIIYEI  83

51) bsaX in NC_009079


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 49/68 (73%), Gaps = 0/68 (0%)

Query  14  LVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLA  73
           +++LL  + V  A+V+G+ I+L+Q++TQLQ+QTLPF LK++AVF+ L +   W G  L+ 
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  74  FATEMLSI  81
           F++ +  I
Sbjct  76  FTSIIYEI  83

52) bsaX in NC_017832


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 49/68 (73%), Gaps = 0/68 (0%)

Query  14  LVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLA  73
           +++LL  + V  A+V+G+ I+L+Q++TQLQ+QTLPF LK++AVF+ L +   W G  L+ 
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  74  FATEMLSI  81
           F++ +  I
Sbjct  76  FTSIIYEI  83

53) BURPS1106A_A2078 in NC_009078


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 49/68 (73%), Gaps = 0/68 (0%)

Query  14  LVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLA  73
           +++LL  + V  A+V+G+ I+L+Q++TQLQ+QTLPF LK++AVF+ L +   W G  L+ 
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  74  FATEMLSI  81
           F++ +  I
Sbjct  76  FTSIIYEI  83

54) bsaX in NC_007435


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 49/68 (73%), Gaps = 0/68 (0%)

Query  14  LVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLA  73
           +++LL  + V  A+V+G+ I+L+Q++TQLQ+QTLPF LK++AVF+ L +   W G  L+ 
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  74  FATEMLSI  81
           F++ +  I
Sbjct  76  FTSIIYEI  83

55) BURPS668_A2166 in NC_009075


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 49/68 (73%), Gaps = 0/68 (0%)

Query  14  LVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLA  73
           +++LL  + V  A+V+G+ I+L+Q++TQLQ+QTLPF LK++AVF+ L +   W G  L+ 
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  74  FATEMLSI  81
           F++ +  I
Sbjct  76  FTSIIYEI  83

56) BPC006_II2060 in NC_018529


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 49/68 (73%), Gaps = 0/68 (0%)

Query  27  LVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLA  86
           +++LL  + V  A+V+G+ I+L+Q++TQLQ+QTLPF LK++AVF+ L +   W G  L+ 
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  87  FATEMLSI  94
           F++ +  I
Sbjct  76  FTSIIYEI  83

57) bsaX in NC_006351


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 49/68 (73%), Gaps = 0/68 (0%)

Query  14  LVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLA  73
           +++LL  + V  A+V+G+ I+L+Q++TQLQ+QTLPF LK++AVF+ L +   W G  L+ 
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  74  FATEMLSI  81
           F++ +  I
Sbjct  76  FTSIIYEI  83

58) BDL_4845 in NC_021877


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 49/68 (73%), Gaps = 0/68 (0%)

Query  14  LVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLA  73
           +++LL  + V  A+V+G+ I+L+Q++TQLQ+QTLPF LK++AVF+ L +   W G  L+ 
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  74  FATEMLSI  81
           F++ +  I
Sbjct  76  FTSIIYEI  83

59) BTH_II0837 in NC_007650


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 49/68 (73%), Gaps = 0/68 (0%)

Query  14  LVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLA  73
           +++LL  + V  A+V+G+ I+L+Q++TQLQ+QTLPF LK++AVF+ L +   W G  L+ 
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  74  FATEMLSI  81
           F++ +  I
Sbjct  76  FTSIIYEI  83

60) BTI_4015 in NC_021174


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 53.7 bits (184),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 29/68 (43%), Positives = 49/68 (73%), Gaps = 0/68 (0%)

Query  14  LVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLA  73
           +++LL  + V  A+V+G+ I+L+Q++TQLQ+QTLPF LK++AVF+ L +   W G  L+ 
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  74  FATEMLSI  81
           F++ +  I
Sbjct  76  FTSIIYEI  83

61) fliQ in NC_017030


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 53.2 bits (182),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 31/77 (41%), Positives = 55/77 (72%), Gaps = 0/77 (0%)

Query  7   ITQEALFLVLVVSAPPVLMSLLVGFLISLFQATTQIQEQTLTFAPKVVLVFGVLAMTGPW  66
           I  + L +++++S P VL + ++G++ISL+QA TQ+Q+QTL F  K++ VF+ LA+T  W
Sbjct  9   ICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHW  68

Query  67  IGGQLLRFTFHVFDRFP  83
           +G  L+ FT  +++ +P
Sbjct  69  MGVTLINFTSIIYEIIP  85

62) SARI_01562 in NC_010067


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 52.9 bits (181),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 64/80 (80%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAT  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+ +
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

63) S70_09790 in NC_017731


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 52.9 bits (181),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 28/66 (43%), Positives = 53/66 (81%), Gaps = 1/66 (1%)

Query  11  AMLLIVMLSAIP-VIVATVVGLLVGLIQTVTQLQEQTLPFGIKLLAVFGSLFMISGWLAD  69
            ML I+ L ++P V+ A+V+G++++LIQ++TQLQ+QTLPF +K++AVF++L +   W++ 
Sbjct  12  QMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGV  71

Query  70  KVMNYA  75
            ++N++
Sbjct  72  TLINFT  77

64) fliQ in NC_011985


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 52.6 bits (180),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 30/72 (42%), Positives = 53/72 (74%), Gaps = 0/72 (0%)

Query  14  IWTVLVASGPAVLAAMVVGLVIALIQALTQVQEATLTFVPKIVAVMVTVGISAPFVGSQI  73
           +W +++ S P+VLAA V+G+VI+LIQA+TQ+Q+ TL F+ KI+AV  T++++   +G  +
Sbjct  14  LWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTL  73

Query  74  SIFTNLVFSRIQ  85
             FT++++  I 
Sbjct  74  INFTSIIYEIIP  85

65) AMIS_2110 in NC_017093


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 52.6 bits (180),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 35/86 (41%), Positives = 59/86 (69%), Gaps = 0/86 (0%)

Query  1   MTDTMVVELALQAMTISAKLAAPVLLTALGVGFVISLFQSVTQIQEATLSFVPKAIAIGV  60
           M    +V++ +Q + I   L+ P +L+A  +G+VISL+Q++TQ+Q+ TL+F+ K IA+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  ALLLTGNWMLREMLTFTTQLYEKIPQ  86
           +L LT +WM   ++ FT+ +YE IPQ
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQ  86

66) fliQ in NC_020059


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 52.1 bits (178),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 29/72 (41%), Positives = 53/72 (74%), Gaps = 0/72 (0%)

Query  14  IWTVLVASGPAVIAAMVVGLVIALIQALTQVQEATLTFVPKIVAVMVTIGISAPFVGAQI  73
           +W +++ S P+V+AA V+G+VI+LIQA+TQ+Q+ TL F+ KI+AV  T++++   +G  +
Sbjct  14  LWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTL  73

Query  74  SIFTNLVFSRIQ  85
             FT++++  I 
Sbjct  74  INFTSIIYEIIP  85

67) fliQ in NC_021820


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

68) fliQ in NC_021844


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

69) SBOV14166 in NC_022241


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

70) ssaS in NC_006905


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

71) fliQ in NC_021818


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

72) ssaS in NC_011294


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

73) ssaS in NC_011274


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

74) SEEH1578_16335 in NC_021810


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

75) SU5_02036 in NC_017623


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

76) fliQ in NC_021812


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

77) SeHA_C1553 in NC_011083


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

78) CFSAN001992_04490 in NC_020307


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

79) SSPA1331 in NC_011147


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

80) ssaS in NC_006511


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

81) SPAB_01905 in NC_010102


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

82) ssaS in NC_012125


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

83) fliQ in NC_021984


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

84) SeSA_A1516 in NC_011094


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

85) ssaS in NC_016856


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

86) STMMW_14251 in NC_016854


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

87) ssaS in NC_003197


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

88) ssaS in NC_016810


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

89) ssaS in NC_016857


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

90) STMDT12_C14360 in NC_016860


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

91) STU288_03420 in NC_021151


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

92) ssaS in NC_016863


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

93) fliQ in NC_021814


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

94) fliQ in NC_021905


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 30/72 (42%), Positives = 53/72 (74%), Gaps = 0/72 (0%)

Query  14  IWTVLIASGPAVLAAMVVGLVIALIQALTQVQEATLTFVPKIVAVLVVVGITAPFVGSQI  73
           +W +++ S P+VLAA V+G+VI+LIQA+TQ+Q+ TL F+ KI+AV+  +++T   +G  +
Sbjct  14  LWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTL  73

Query  74  SIFTNLVFSRIQ  85
             FT++++  I 
Sbjct  74  INFTSIIYEIIP  85

95) fliQ in NC_007761


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 30/72 (42%), Positives = 53/72 (74%), Gaps = 0/72 (0%)

Query  14  IWTVLIASGPAVLAAMVVGLVIALIQALTQVQEATLTFVPKIVAVLVVVGITAPFVGSQI  73
           +W +++ S P+VLAA V+G+VI+LIQA+TQ+Q+ TL F+ KI+AV+  +++T   +G  +
Sbjct  14  LWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTL  73

Query  74  SIFTNLVFSRIQ  85
             FT++++  I 
Sbjct  74  INFTSIIYEIIP  85

96) fliQ in NC_012587


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 57/84 (68%), Gaps = 0/84 (0%)

Query  1   MNEADALDIVQAAIWTVIVASGPAVLAAMVVGVVIAFIQALTQVQEMTLTFVPKILAVMV  60
           M+ +  ++I    +W +++ S P+VLAA V+G+VI++IQA+TQ+Q+ TL F+ KI+AV  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TAAISAPFVGAQISIFTDIIFSRI  84
           T A++   +G  +  FT II+  I
Sbjct  61  TLALTYHWMGVTLINFTSIIYEII  84

97) fliQ in NC_016812


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 57/84 (68%), Gaps = 0/84 (0%)

Query  1   MNEADALDIVQAAIWTVIVASGPAVLAAMVVGVVIAFIQALTQVQEMTLTFVPKILAVMV  60
           M+ +  ++I    +W +++ S P+VLAA V+G+VI++IQA+TQ+Q+ TL F+ KI+AV  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TAAISAPFVGAQISIFTDIIFSRI  84
           T A++   +G  +  FT II+  I
Sbjct  61  TLALTYHWMGVTLINFTSIIYEII  84

98) ssaS in NC_003198


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.6 bits (176),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFITQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

99) TY21A_06545 in NC_021176


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.6 bits (176),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFITQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

100) ssaS in NC_004631


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.6 bits (176),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MNDSELTQFITQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           M+ + L Q+  Q+LWI+++ S+P VL ASV+G+++SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLMVSYPWLSGILLNYTRQI  80
           TL ++Y W++  L+N+T  I
Sbjct  61  TLALTYHWMGVTLINFTSII  80

101) Sked_31050 in NC_013521


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.3 bits (175),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 36/85 (43%), Positives = 59/85 (70%), Gaps = 0/85 (0%)

Query  1   MDTSAVLDIGVQGLIIAAKLCAPVLITALVVGFAVSLLQSITQIQEVTLSFVPKAIAVSL  60
           MDT+ +++I VQ L I   L  P +++A V+G+ +SL+Q+ITQ+Q+ TL+F+ K IAV  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  ALLISGHWMISEMISFTHELFGRIP  85
           +L ++ HWM   +I+FT  ++  IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

102) fliQ in NC_012850


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.3 bits (175),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 29/72 (41%), Positives = 54/72 (75%), Gaps = 0/72 (0%)

Query  14  IWTVLIAAGPAVIAAMVVGLVIALIQALTQVQEATLTFVPKIVAVLITVGVTAPFVGSQI  73
           +W +++ + P+V+AA V+G+VI+LIQA+TQ+Q+ TL F+ KI+AV+ T+++T   +G  +
Sbjct  14  LWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTL  73

Query  74  SIFTNLVFSRIQ  85
             FT++++  I 
Sbjct  74  INFTSIIYEIIP  85

103) fliQ in NC_008380


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 51.3 bits (175),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 29/72 (41%), Positives = 54/72 (75%), Gaps = 0/72 (0%)

Query  14  IWTVLIAAGPAVIAAMVVGLVIALIQALTQVQEATLTFVPKIVAVLITVGVTAPFVGSQI  73
           +W +++ + P+V+AA V+G+VI+LIQA+TQ+Q+ TL F+ KI+AV+ T+++T   +G  +
Sbjct  14  LWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTL  73

Query  74  SIFTNLVFSRIQ  85
             FT++++  I 
Sbjct  74  INFTSIIYEIIP  85

104) fliQ in NC_010994


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 50.3 bits (171),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 29/72 (41%), Positives = 54/72 (75%), Gaps = 0/72 (0%)

Query  14  IWTVLIAAGPAVIAAMVVGLVIALIQALTQVQEATLTFVPKILAVLITVGVTAPFIGSQI  73
           +W +++ + P+V+AA V+G+VI+LIQA+TQ+Q+ TL F+ KI+AV+ T+++T   +G  +
Sbjct  14  LWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTL  73

Query  74  SIFTNLVFSRIQ  85
             FT++++  I 
Sbjct  74  INFTSIIYEIIP  85

105) Mesau_01994 in NC_019973


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 49.8 bits (169),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 31/73 (43%), Positives = 49/73 (68%), Gaps = 0/73 (0%)

Query  14  VWTVLTASAPVVLVAMAVGIGIALIQALTQVQEITLTFVPKIVAIMLVVALTGPFIGGQI  73
           +W ++  S P VL A  +GI I+LIQA+TQ+Q+ TL F+ KI+A+   +ALT   +G  +
Sbjct  14  LWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTL  73

Query  74  SAFTNVIFERIQN  86
             FT++I+E I +
Sbjct  74  INFTSIIYEIIPQ  86

106) Mesop_1988 in NC_015675


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 49.8 bits (169),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 31/73 (43%), Positives = 49/73 (68%), Gaps = 0/73 (0%)

Query  14  VWTVLTASAPVVLVAMAVGIGIALIQALTQVQEITLTFVPKIVAIMLVVALTGPFIGGQI  73
           +W ++  S P VL A  +GI I+LIQA+TQ+Q+ TL F+ KI+A+   +ALT   +G  +
Sbjct  14  LWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTL  73

Query  74  SAFTNVIFERIQN  86
             FT++I+E I +
Sbjct  74  INFTSIIYEIIPQ  86

107) sctS in NC_020127


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 49.2 bits (167),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 30/69 (44%), Positives = 51/69 (74%), Gaps = 0/69 (0%)

Query  8   LYLVLVLSMPPILVASLVGLFVSLIQAITQLQEQTLAFGIKLLAVVLTLFFMGGWLTGEL  67
           L ++++LS+P +L AS++G+ +SLIQAITQLQ+QTL+F +K++AV  TL +   W+   L
Sbjct  14  LWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTL  73

Query  68  YRYAEEIFN  76
             ++  I++
Sbjct  74  INFTSIIYE  82

108) yscS in NC_008011


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 49.2 bits (167),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 30/69 (44%), Positives = 51/69 (74%), Gaps = 0/69 (0%)

Query  13  LYLVLVLSMPPILVASLVGLFVSLIQAITQLQEQTLAFGIKLLAVVLTLFFMGGWLTGEL  72
           L ++++LS+P +L AS++G+ +SLIQAITQLQ+QTL+F +K++AV  TL +   W+   L
Sbjct  14  LWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTL  73

Query  73  YRYAEEIFN  81
             ++  I++
Sbjct  74  INFTSIIYE  82

109) fliQ in NC_002678


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 49.2 bits (167),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 30/73 (42%), Positives = 49/73 (68%), Gaps = 0/73 (0%)

Query  14  VWTVLTASAPVVLVAMAVGIGIALIQALTQIQEITLTFVPKIVAIMLVVALTGPFIGGQI  73
           +W ++  S P VL A  +GI I+LIQA+TQ+Q+ TL F+ KI+A+   +ALT   +G  +
Sbjct  14  LWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTL  73

Query  74  SAFTNVIFQRIQN  86
             FT++I++ I +
Sbjct  74  INFTSIIYEIIPQ  86

110) Desku_1771 in NC_015573


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 49.0 bits (166),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 36/86 (42%), Positives = 61/86 (71%), Gaps = 0/86 (0%)

Query  1   MTDTLVTQIAREALMMILILSLPTlavsllvglvisilQATTQVQEQSLTFVPKIIAVFL  60
           M    + QI  + L +I++LSLPT+  + ++G+VIS++QA TQ+Q+Q+L F+ KIIAVF 
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TLAVTAPWMVRLMTSYTTRLFKHLPN  86
           TLA+T  WM   + ++T+ ++  +P+
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIPQ  86

111) fliQ in NC_020516


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 48.7 bits (165),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 36/85 (43%), Positives = 61/85 (72%), Gaps = 0/85 (0%)

Query  1   MNPGTIVDIGREALEITllmaapmflaalVTGLIVSVFQAATQINEMTLSFVPKLVAVFA  60
           M+ G +V+I  + L I +L++ P  LAA V G+++S++QA TQ+++ TL+F+ K++AVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  SLVIAGHWMMTLIIDFTRRLLESIP  85
           +L ++ HWM   +I+FT  + E IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

112) Clo1100_2394 in NC_016791


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 48.7 bits (165),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 33/77 (43%), Positives = 56/77 (73%), Gaps = 0/77 (0%)

Query  1   MDESSIINIAQEALKVILYVSAPILLISMVVGLVISIFQATTQIQEQTLTFVPKILSVVA  60
           MD + +++I  + L +I+ +S P +L + V+G+VIS++QA TQ+Q+QTL F+ KI++V A
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  AIALFGSWMLRVLIEYT  77
           ++AL   WM   LI++T
Sbjct  61  TLALTYHWMGVTLINFT  77

113) fliQ in NC_009662


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 48.4 bits (164),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 34/75 (46%), Positives = 52/75 (70%), Gaps = 0/75 (0%)

Query  12  QMLKITALVSLPPLATAFGVGLIISIFQAATQIQEMTLTFIPKIIATVAALIIFGSWMFV  71
           QML I  L+SLP + +A  +G++IS++QA TQ+Q+ TL F+ KIIA  A+L +   WM V
Sbjct  12  QMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGV  71

Query  72  TLIDYYKSIFDSITR  86
           TLI++   I++ I +
Sbjct  72  TLINFTSIIYEIIPQ  86

114) Rru_A2823 in NC_007643


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 47.7 bits (161),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 28/69 (41%), Positives = 49/69 (72%), Gaps = 0/69 (0%)

Query  13  MLIISAPPLLAGMVIGLIIALFQTLTQIQEMTLVFVPKIVVVFASLLLTLPWMVRQASEF  72
           ++++S P +LA+ VIG++I+L+Q++TQ+Q+ TL F+ KI+ VFA+L LT  WM     +F
Sbjct  17  IFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINF  76

Query  73  MERLMDIVT  81
              + +I+ 
Sbjct  77  TSIIYEIIP  85

115) Btus_1510 in NC_014098


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 47.4 bits (160),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 35/82 (43%), Positives = 58/82 (71%), Gaps = 0/82 (0%)

Query  1   MSPDNVLQIGQETLRIAlllslpflgftlVVGLIISIFQAVTQIQEPTLTFLPKVLAVFA  60
           M  + ++QI  + L+I +LLSLP +  + V+G++IS++QA+TQ+Q+ TL FL K++AVFA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  VILLLGPWMLHTLLDYTEGIFG  82
            + L   WM  TL+++T  I+ 
Sbjct  61  TLALTYHWMGVTLINFTSIIYE  82

116) ssaS in NC_012751


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 46.1 bits (155),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 38/81 (47%), Positives = 66/81 (82%), Gaps = 0/81 (0%)

Query  1   MSNAIIIQLTTQVLWIVLIlsmpvvvvaslvglmvslFQALTQIQDQTLQFlikllavcl  60
           M  + ++Q+  Q+LWI+++LS+P V+ AS++G+++SL+QA+TQ+QDQTL FL+K++AV  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  cllMSYHWMGSTMLNYTHQVF  81
            L ++YHWMG T++N+T  ++
Sbjct  61  TLALTYHWMGVTLINFTSIIY  81

117) Neut_2060 in NC_008344


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 46.1 bits (155),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 29/70 (42%), Positives = 49/70 (70%), Gaps = 0/70 (0%)

Query  16  ITFTIAAPLLLAALVTGLAISIFQAATQINEMTLSFIPKLLAIFLTLALAGPWMLQIILD  75
           I F ++ P +LAA V G+ IS++QA TQ+++ TL+F+ K++A+F TLAL+  WM   +++
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  76  YIERLYTSIP  85
           +   +Y  IP
Sbjct  76  FTSIIYEIIP  85

118) xsaX in NC_013722


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 45.8 bits (154),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 26/63 (42%), Positives = 50/63 (80%), Gaps = 0/63 (0%)

Query  19  SAPAIITATIVGIAMGLFQTVTQLQEQTLPFGVKliavlacllllEPWMAMIVMRFAREV  78
           S P++++A+++GI ++L+Q++TQLQ+QTLPF +K+IAV+A L L   WM++ ++ F+  +
Sbjct  21  SLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFTSII  80

Query  79  FRM  81
           + +
Sbjct  81  YEI  83

119) Pmob_1395 in NC_010003


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 45.0 bits (151),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 26/63 (42%), Positives = 44/63 (70%), Gaps = 1/63 (1%)

Query  15  MLFLKVVSPILIISVAVGLIISIFQAVTQLHEQTLTFAPKIIITFLALVLMFSWIMQNLS  74
           ++FL  ++ +L  SV +G++IS++QA+TQL++QTL F  KII  F +L L + W+   L 
Sbjct  16  IIFLLSLPTVLAASV-IGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLI  74

Query  75  DFS  77
           +F+
Sbjct  75  NFT  77

120) Despr_2237 in NC_014972


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 45.0 bits (151),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 36/88 (41%), Positives = 59/88 (68%), Gaps = 2/88 (2%)

Query  1   MSPEAVIHIGRKAVETILLTSAPMLIAAMVIGLIISIFQAATQINEQTMTFIPKIVAVFI  60
           M    +++I  + +  I+L S P ++AA VIG++IS++QA TQ+++QT+ F+ KI+AVF 
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  TL-LIFGPWIMELLITFTTGIINQIATV  87
           TL L +  W+   LI FT+ I + I+ V
Sbjct  61  TLALTY-HWMGVTLINFTSIIYEIIPQV  87

121) BTI_1910 in NC_021173


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 44.8 bits (150),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 44/85 (52%), Positives = 67/85 (79%), Gaps = 0/85 (0%)

Query  1   MSEAVITQLAAQMMWlvlllslpvvvvasvvgilvslvQALTQVQDQTIQFLIKllavav  60
           M  + + Q+  QM+W+++LLSLP V+ ASV+GI++SL+QA+TQ+QDQT+ FL+K++AV  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  tlaatYHWMGDVLINYATQSFNQIG  85
           TLA TYHWMG  LIN+++  ++ I 
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

122) PSEBR_a5381 in NC_015379


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 44.8 bits (150),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 29/71 (41%), Positives = 53/71 (75%), Gaps = 0/71 (0%)

Query  13  LVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKlvavgltllvtgRWIGVELLG  72
           ++ LLS P ++ A ++G++ SL+QA+ Q+QDQTLPF +K++AV  TL +T +W+GV L+ 
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  73  LLRRAFEMMAN  83
           +    +E++++
Sbjct  76  FTSIIYEIIPQ  86

123) hrcS in NC_016830


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 44.8 bits (150),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 29/71 (41%), Positives = 53/71 (75%), Gaps = 0/71 (0%)

Query  13  LVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKlvavgltllvtgRWIGVELLG  72
           ++ LLS P ++ A ++G++ SL+QA+ Q+QDQTLPF +K++AV  TL +T +W+GV L+ 
Sbjct  16  IIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLIN  75

Query  73  LLRRAFEMMAN  83
           +    +E++++
Sbjct  76  FTSIIYEIIPQ  86

124) fliQ in NC_010505


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 44.2 bits (148),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 29/71 (41%), Positives = 49/71 (70%), Gaps = 0/71 (0%)

Query  14  IWTIIVASGPAVGAAMVVGILIALFQALTQIQEVTLTFVPKIVVVLIVMIVTGSFVGGQI  73
           +W I++ S P+V AA V+GI+I+L+QA+TQ+Q+ TL F+ KI+ V+  + +T   +G  +
Sbjct  14  LWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTL  73

Query  74  YAFTEMVYGRI  84
             FT ++Y  I
Sbjct  74  INFTSIIYEII  84

125) hrcS in NC_014323


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 44.0 bits (147),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 31/76 (41%), Positives = 59/76 (78%), Gaps = 0/76 (0%)

Query  10  QSLWMAIMMSAPPLLIATLCGLGVSLIQAVTQIQDQTlpyvvklvavavtlaSMGRWIGV  69
           Q LW+ +++S P +L A++ G+ +SLIQA+TQ+QDQTLP+++K++AV  TLA   +W+GV
Sbjct  12  QMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGV  71

Query  70  EMLRLADLAFTMVPDI  85
            ++ ++ + + ++P++
Sbjct  72  TLINFTSIIYEIIPQV  87

126) fliQ in NC_012563


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 42.4 bits (141),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 30/70 (43%), Positives = 47/70 (68%), Gaps = 0/70 (0%)

Query  18  LLISAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVAVVGLLTGSWMLHQLLAFT  77
           +L+S P +  + ++G++IS++QA TQ+Q+QTL F+ K+IAV     LT  WM   L+ FT
Sbjct  18  FLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFT  77

Query  78  ERIFAMITQV  87
             I+ +I QV
Sbjct  78  SIIYEIIPQV  87

127) fliQ in NC_009697


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 42.4 bits (141),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 30/70 (43%), Positives = 47/70 (68%), Gaps = 0/70 (0%)

Query  18  LLISAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVAVVGLLTGSWMLHQLLAFT  77
           +L+S P +  + ++G++IS++QA TQ+Q+QTL F+ K+IAV     LT  WM   L+ FT
Sbjct  18  FLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFT  77

Query  78  ERIFAMITQV  87
             I+ +I QV
Sbjct  78  SIIYEIIPQV  87

128) fliQ in NC_009495


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 42.4 bits (141),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 30/70 (43%), Positives = 47/70 (68%), Gaps = 0/70 (0%)

Query  18  LLISAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVAVVGLLTGSWMLHQLLAFT  77
           +L+S P +  + ++G++IS++QA TQ+Q+QTL F+ K+IAV     LT  WM   L+ FT
Sbjct  18  FLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFT  77

Query  78  ERIFAMITQV  87
             I+ +I QV
Sbjct  78  SIIYEIIPQV  87

129) fliQ in NC_009698


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 42.4 bits (141),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 30/70 (43%), Positives = 47/70 (68%), Gaps = 0/70 (0%)

Query  18  LLISAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVAVVGLLTGSWMLHQLLAFT  77
           +L+S P +  + ++G++IS++QA TQ+Q+QTL F+ K+IAV     LT  WM   L+ FT
Sbjct  18  FLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFT  77

Query  78  ERIFAMITQV  87
             I+ +I QV
Sbjct  78  SIIYEIIPQV  87

130) fliQ in NC_012658


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 42.4 bits (141),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 30/70 (43%), Positives = 47/70 (68%), Gaps = 0/70 (0%)

Query  18  LLISAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVAVVGLLTGSWMLHQLLAFT  77
           +L+S P +  + ++G++IS++QA TQ+Q+QTL F+ K+IAV     LT  WM   L+ FT
Sbjct  18  FLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFT  77

Query  78  ERIFAMITQV  87
             I+ +I QV
Sbjct  78  SIIYEIIPQV  87

131) fliQ in NC_017297


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 42.4 bits (141),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 30/70 (43%), Positives = 47/70 (68%), Gaps = 0/70 (0%)

Query  18  LLISAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVAVVGLLTGSWMLHQLLAFT  77
           +L+S P +  + ++G++IS++QA TQ+Q+QTL F+ K+IAV     LT  WM   L+ FT
Sbjct  18  FLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFT  77

Query  78  ERIFAMITQV  87
             I+ +I QV
Sbjct  78  SIIYEIIPQV  87

132) fliQ in NC_009699


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 42.4 bits (141),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 30/70 (43%), Positives = 47/70 (68%), Gaps = 0/70 (0%)

Query  18  LLISAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVAVVGLLTGSWMLHQLLAFT  77
           +L+S P +  + ++G++IS++QA TQ+Q+QTL F+ K+IAV     LT  WM   L+ FT
Sbjct  18  FLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFT  77

Query  78  ERIFAMITQV  87
             I+ +I QV
Sbjct  78  SIIYEIIPQV  87

133) yscS in NC_015717


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 42.1 bits (140),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 28/66 (43%), Positives = 47/66 (72%), Gaps = 0/66 (0%)

Query  22  MPPIvvatvvgvvLSLIQAITQIQEQTLSFAVKLIVVSVVILGTASWLGGELYRYTERVF  81
           +P ++ A+V+G+V+SLIQAITQ+Q+QTL+F +K+I V   +  T  W+G  L  +T  ++
Sbjct  22  LPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFTSIIY  81

Query  82  DSIGQI  87
           + I Q+
Sbjct  82  EIIPQV  87

134) MXAN_2448 in NC_008095


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 42.1 bits (140),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 32/77 (42%), Positives = 55/77 (72%), Gaps = 0/77 (0%)

Query  7   ITQEALFLVLVASAPPVLMSLLVGFIISLFQATTQIQEQTLTFAPKvvavfgvlalagPW  66
           I  + L ++++ S P VL + ++G++ISL+QA TQ+Q+QTL F  K++AVF+ LAL+  W
Sbjct  9   ICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHW  68

Query  67  IGSQLVRFTFHVFDRFP  83
           +G  L+ FT  +++ +P
Sbjct  69  MGVTLINFTSIIYEIIP  85

135) Krad_1667 in NC_009664


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 41.1 bits (136),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 29/66 (44%), Positives = 45/66 (69%), Gaps = 0/66 (0%)

Query  20  LSAPMLLTALAVGFGISLFQSVTQLQEQTIAFVPKavavgiaivvCGKWMLHELTGFTST  79
           LS P +L+A  +G+ ISL+Q++TQLQ+QT++F+ K +AV  ++ +   WM   L  FTS 
Sbjct  20  LSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFTSI  79

Query  80  LYGQIP  85
           +Y  IP
Sbjct  80  IYEIIP  85

136) H04402_02742 in NC_017299


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 41.1 bits (136),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 29/70 (42%), Positives = 47/70 (68%), Gaps = 0/70 (0%)

Query  18  LLISAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVALVGLLTGSWMLHQLLAFT  77
           +L+S P +  + ++G++IS++QA TQ+Q+QTL F+ K+IAV     LT  WM   L+ FT
Sbjct  18  FLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFT  77

Query  78  ERIFAMITQI  87
             I+ +I Q+
Sbjct  78  SIIYEIIPQV  87

137) fliQ in NC_010520


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 40.8 bits (135),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 30/70 (43%), Positives = 47/70 (68%), Gaps = 1/70 (1%)

Query  18  LLVSAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVALVGLLTGSWMLHQLLAFT  77
           LL  + +L+ S+ +G++IS++QA TQ+Q+QTL F+ K+IAV     LT  WM   L+ FT
Sbjct  19  LLSLPTVLAASV-IGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFT  77

Query  78  ERIFAMITQI  87
             I+ +I Q+
Sbjct  78  SIIYEIIPQV  87

138) fliQ in NC_010516


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 40.8 bits (135),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 30/70 (43%), Positives = 47/70 (68%), Gaps = 1/70 (1%)

Query  18  LLVSAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVALVGLLTGSWMLHQLLAFT  77
           LL  + +L+ S+ +G++IS++QA TQ+Q+QTL F+ K+IAV     LT  WM   L+ FT
Sbjct  19  LLSLPTVLAASV-IGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFT  77

Query  78  ERIFAMITQI  87
             I+ +I Q+
Sbjct  78  SIIYEIIPQV  87

139) spaQ in NC_012751


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 40.8 bits (135),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 29/72 (41%), Positives = 48/72 (67%), Gaps = 0/72 (0%)

Query  10  KALYLILTLSAIPVAVATAVGLIIGLIQTVTQLQEQTLPFGIKllsvslclfllAGWYGD  69
           + L +I+ LS   V  A+ +G++I+LIQ++TQLQ+QTLPF +K+++V   L L   W G 
Sbjct  12  QMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGV  71

Query  70  TLLAYAREVIGI  81
           TL+ ++  +  I
Sbjct  72  TLINFTSIIYEI  83

140) Thethe_01404 in NC_019970


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 40.3 bits (133),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 33/77 (43%), Positives = 56/77 (73%), Gaps = 0/77 (0%)

Query  1   MDPGVVLDIGREALMVTMIVSAPllivslligliisiFQATTQIQEQTLTFVPKILAIFA  60
           MD G +++I  + L +  ++S P ++ + +IG++IS++QA TQ+Q+QTL F+ KI+A+FA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  SIILFGPWMLTTLINYT  77
           ++ L   WM  TLIN+T
Sbjct  61  TLALTYHWMGVTLINFT  77

141) Tsac_1797 in NC_017992


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 39.5 bits (130),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 31/77 (41%), Positives = 55/77 (72%), Gaps = 0/77 (0%)

Query  1   MDPGVVLDIGREALMVTMMVSAPlliisllvgliisiFQATTQIQEQTLTFVPKILAIFA  60
           MD G +++I  + L +  ++S P ++ + ++G++IS++QA TQ+Q+QTL F+ KI+A+FA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  SIILFGPWMLTVLINYT  77
           ++ L   WM   LIN+T
Sbjct  61  TLALTYHWMGVTLINFT  77

142) Thexy_1316 in NC_015555


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 39.5 bits (130),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 31/77 (41%), Positives = 55/77 (72%), Gaps = 0/77 (0%)

Query  1   MDPGLVLDIGREALMVTMMVSAPlliisllvgliisiFQATTQIQEQTLTFVPKILAIFA  60
           MD G +++I  + L +  ++S P ++ + ++G++IS++QA TQ+Q+QTL F+ KI+A+FA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  SIILFGPWMLTVLINYT  77
           ++ L   WM   LIN+T
Sbjct  61  TLALTYHWMGVTLINFT  77

143) Thein_0184 in NC_015681


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 39.0 bits (128),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/63 (42%), Positives = 49/63 (78%), Gaps = 0/63 (0%)

Query  18  LLISMPMLLAGLVVGLLISIFQAVTQIQEMTLTFVPKIvavllallvaFPWIMRKMLTFT  77
           +L+S+P +LA+ V+G++IS++QA+TQ+Q+ TL F+ KI+AV+ +L +++ W+   ++ FT
Sbjct  18  FLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFT  77

Query  78  EQI  80
             I
Sbjct  78  SII  80

144) Tthe_1439 in NC_014410


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.7 bits (127),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 32/77 (42%), Positives = 55/77 (72%), Gaps = 0/77 (0%)

Query  1   MDPGVVLDIGREALMVTMIVSAPllivslligliisiFQATTQIQEQTLTFVPKILAIFA  60
           MD G +++I  + L +  ++S P ++ + +IG++IS++QA TQ+Q+QTL F+ KI+A+FA
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  SIILFGPWMLTILINYT  77
           ++ L   WM   LIN+T
Sbjct  61  TLALTYHWMGVTLINFT  77

145) fliQ in NC_022362


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/85 (46%), Positives = 58/85 (69%), Gaps = 0/85 (0%)

Query  1   MDESTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD + LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMIDFTENILNQIP  85
            L +   WM  T+I+FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

146) fliQ in NC_022352


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/85 (46%), Positives = 58/85 (69%), Gaps = 0/85 (0%)

Query  1   MDESTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD + LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMIDFTENILNQIP  85
            L +   WM  T+I+FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

147) fliQ in NC_022351


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/85 (46%), Positives = 58/85 (69%), Gaps = 0/85 (0%)

Query  1   MDESTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD + LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMIDFTENILNQIP  85
            L +   WM  T+I+FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

148) fliQ in NC_022353


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/85 (46%), Positives = 58/85 (69%), Gaps = 0/85 (0%)

Query  1   MDESTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD + LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMIDFTENILNQIP  85
            L +   WM  T+I+FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

149) M635_04085 in NC_021834


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/85 (46%), Positives = 58/85 (69%), Gaps = 0/85 (0%)

Query  1   MDESTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD + LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMIDFTENILNQIP  85
            L +   WM  T+I+FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

150) fliQ in NC_009839


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/85 (46%), Positives = 58/85 (69%), Gaps = 0/85 (0%)

Query  1   MDESTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD + LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMIDFTENILNQIP  85
            L +   WM  T+I+FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

151) fliQ in NC_008787


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/85 (46%), Positives = 58/85 (69%), Gaps = 0/85 (0%)

Query  1   MDESTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD + LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMIDFTENILNQIP  85
            L +   WM  T+I+FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

152) fliQ in NC_017279


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/85 (46%), Positives = 58/85 (69%), Gaps = 0/85 (0%)

Query  1   MDESTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD + LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMIDFTENILNQIP  85
            L +   WM  T+I+FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

153) fliQ in NC_017280


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/85 (46%), Positives = 58/85 (69%), Gaps = 0/85 (0%)

Query  1   MDESTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD + LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMIDFTENILNQIP  85
            L +   WM  T+I+FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

154) fliQ in NC_002163


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/85 (46%), Positives = 58/85 (69%), Gaps = 0/85 (0%)

Query  1   MDESTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD + LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMIDFTENILNQIP  85
            L +   WM  T+I+FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

155) fliQ in NC_018521


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/85 (46%), Positives = 58/85 (69%), Gaps = 0/85 (0%)

Query  1   MDESTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD + LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMIDFTENILNQIP  85
            L +   WM  T+I+FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

156) fliQ in NC_018709


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/85 (46%), Positives = 58/85 (69%), Gaps = 0/85 (0%)

Query  1   MDESTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD + LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMIDFTENILNQIP  85
            L +   WM  T+I+FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

157) fliQ in NC_003912


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/85 (46%), Positives = 58/85 (69%), Gaps = 0/85 (0%)

Query  1   MDESTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD + LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMIDFTENILNQIP  85
            L +   WM  T+I+FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

158) fliQ in NC_017281


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 38.2 bits (125),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 39/85 (46%), Positives = 58/85 (69%), Gaps = 0/85 (0%)

Query  1   MDESTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD + LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMIDFTENILNQIP  85
            L +   WM  T+I+FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

159) fliQ in NC_009707


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 37.2 bits (121),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 38/85 (45%), Positives = 57/85 (68%), Gaps = 0/85 (0%)

Query  1   MDENTLVALGVQTFKITlllslpmllaglIAGLVISIFQATTQINEMTLSFVPKiilvvv  60
           MD   LV + VQ + I +LLSLP +LA+ + G+VIS++QA TQ+++ TL+F+ KII V  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  iliflMPWMTTTMMDFTENILNQIP  85
            L +   WM  T+++FT  I + IP
Sbjct  61  TLALTYHWMGVTLINFTSIIYEIIP  85

160) fliQ in NC_014246


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 34.5 bits (111),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 28/66 (43%), Positives = 45/66 (69%), Gaps = 0/66 (0%)

Query  20  LSAPILITSLVVGFLISLFQSITQIQEVTLTFVPKTVAVGIALYITGYWMLQTLVTTTED  79
           LS P ++++ V+G++ISL+Q+ITQ+Q+ TL F+ K +AV  +L +T  WM  TL+  T  
Sbjct  20  LSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGVTLINFTSI  79

Query  80  MMARIP  85
           +   IP
Sbjct  80  IYEIIP  85

161) Aaci_1407 in NC_013205


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 26.4 bits (80),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 33/81 (41%), Positives = 57/81 (71%), Gaps = 2/81 (2%)

Query  1   MTDTYVIGLAAQVMWLVVKITAPvlllglamglvvSIFqattqlqeqtlaFIPKIIAVVI  60
           M   Y++ +  Q++W++  ++ P +L +  +G+V+S++QA TQLQ+QTL+F+ KIIAV  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  AL-LAFGPWMLQNLIDFTNSI  80
           +L L++  WM   LI+FT+ I
Sbjct  61  TLALTY-HWMGVTLINFTSII  80

162) TC41_1344 in NC_017167


> JQ747523|40|G37|397781946|AFO66341.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|+|35843..36106|escS|SESS1296_03634|putative 
LEE-encoded type III secretion system factor
Length=87

 Score = 26.4 bits (80),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 33/81 (41%), Positives = 57/81 (71%), Gaps = 2/81 (2%)

Query  1   MTDTYVIGLAAQVMWLVVKITAPvlllglamglvvSIFqattqlqeqtlaFIPKIIAVVI  60
           M   Y++ +  Q++W++  ++ P +L +  +G+V+S++QA TQLQ+QTL+F+ KIIAV  
Sbjct  1   MDTGYLVQICVQMLWIIFLLSLPTVLAASVIGIVISLIQAITQLQDQTLPFLLKIIAVFA  60

Query  61  AL-LAFGPWMLQNLIDFTNSI  80
           +L L++  WM   LI+FT+ I
Sbjct  61  TLALTY-HWMGVTLINFTSII  80