Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of ORF_41 gene of DQ095216

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) c5164
( NP_757012.1 )

hypothetical protein

NC_004431
(Escherichia coli CFT073)

2e-129

2) ECS88_3302
( YP_002392913.1 )

hypothetical protein

NC_011742
(Escherichia coli S88)

2e-129

3) APECO1_3495
( YP_854316.1 )

hypothetical protein

NC_008563
(Escherichia coli APEC O1)

3e-115

100

4) SeHA_C4687
( YP_002048323.1 )

hypothetical protein

NC_011083
(Salmonella enterica SL476)

4e-114

• Sequence Alignments

1) c5164 in NC_004431


> DQ095216|40|G40|70608378|AAZ04450.1|Escherichia_coli_APEC_O1|+|44567..45442|-|ORF_41|conserved 
hypothetical protein
Length=291

 Score =  454 bits (1712),  Expect = 2e-129, Method: Compositional matrix adjust.
 Identities = 290/291 (99%), Positives = 290/291 (99%), Gaps = 0/291 (0%)

Query  1    MIFLLIPLHIQLTCDGENHQKRKRLRRNQMKQYKGGYNVNRYDWKNKTTEHllndnnlad  60
            MIFLLIPLHIQLTCDGENHQKRKRLRRNQMKQYKGGYNVNRYDWKNKTTEHLLNDNNLAD
Sbjct  1    MIFLLIPLHIQLTCDGENHQKRKRLRRNQMKQYKGGYNVNRYDWKNKTTEHLLNDNNLAD  60

Query  61   nHIPEWIRKNEIAAFWFWLIMSHTVPEKLKLNNESEFNSALKGVIVMKDNPMTIIPSSHE  120
            NHIPEW RKNEIAAFWFWLIMSHTVPEKLKLNNESEFNSALKGVIVMKDNPMTIIPSSHE
Sbjct  61   NHIPEWNRKNEIAAFWFWLIMSHTVPEKLKLNNESEFNSALKGVIVMKDNPMTIIPSSHE  120

Query  121  TRLNVIGKWINALILYGEADRIISIMHQNWLGLEKRNEAKWLKKNTEQLKWAWEYIDARI  180
            TRLNVIGKWINALILYGEADRIISIMHQNWLGLEKRNEAKWLKKNTEQLKWAWEYIDARI
Sbjct  121  TRLNVIGKWINALILYGEADRIISIMHQNWLGLEKRNEAKWLKKNTEQLKWAWEYIDARI  180

Query  181  SPTYLSWFNPVNDNERYIAIVVLLKMLFPTDTPCLLTPKEFHLGFAAKERFFDKMHNAFR  240
            SPTYLSWFNPVNDNERYIAIVVLLKMLFPTDTPCLLTPKEFHLGFAAKERFFDKMHNAFR
Sbjct  181  SPTYLSWFNPVNDNERYIAIVVLLKMLFPTDTPCLLTPKEFHLGFAAKERFFDKMHNAFR  240

Query  241  KQFIDGKKDKRVQINVKISPSAKSALDRLTRERKTTQQAILEQLILYGRLD  291
            KQFIDGKKDKRVQINVKISPSAKSALDRLTRERKTTQQAILEQLILYGRLD
Sbjct  241  KQFIDGKKDKRVQINVKISPSAKSALDRLTRERKTTQQAILEQLILYGRLD  291

2) ECS88_3302 in NC_011742


> DQ095216|40|G40|70608378|AAZ04450.1|Escherichia_coli_APEC_O1|+|44567..45442|-|ORF_41|conserved 
hypothetical protein
Length=291

 Score =  454 bits (1712),  Expect = 2e-129, Method: Compositional matrix adjust.
 Identities = 290/291 (99%), Positives = 290/291 (99%), Gaps = 0/291 (0%)

Query  1    MIFLLIPLHIQLTCDGENHQKRKRLRRNQMKQYKGGYNVNRYDWKNKTTEHllndnnlad  60
            MIFLLIPLHIQLTCDGENHQKRKRLRRNQMKQYKGGYNVNRYDWKNKTTEHLLNDNNLAD
Sbjct  1    MIFLLIPLHIQLTCDGENHQKRKRLRRNQMKQYKGGYNVNRYDWKNKTTEHLLNDNNLAD  60

Query  61   nHIPEWIRKNEIAAFWFWLIMSHTVPEKLKLNNESEFNSALKGVIVMKDNPMTIIPSSHE  120
            NHIPEW RKNEIAAFWFWLIMSHTVPEKLKLNNESEFNSALKGVIVMKDNPMTIIPSSHE
Sbjct  61   NHIPEWNRKNEIAAFWFWLIMSHTVPEKLKLNNESEFNSALKGVIVMKDNPMTIIPSSHE  120

Query  121  TRLNVIGKWINALILYGEADRIISIMHQNWLGLEKRNEAKWLKKNTEQLKWAWEYIDARI  180
            TRLNVIGKWINALILYGEADRIISIMHQNWLGLEKRNEAKWLKKNTEQLKWAWEYIDARI
Sbjct  121  TRLNVIGKWINALILYGEADRIISIMHQNWLGLEKRNEAKWLKKNTEQLKWAWEYIDARI  180

Query  181  SPTYLSWFNPVNDNERYIAIVVLLKMLFPTDTPCLLTPKEFHLGFAAKERFFDKMHNAFR  240
            SPTYLSWFNPVNDNERYIAIVVLLKMLFPTDTPCLLTPKEFHLGFAAKERFFDKMHNAFR
Sbjct  181  SPTYLSWFNPVNDNERYIAIVVLLKMLFPTDTPCLLTPKEFHLGFAAKERFFDKMHNAFR  240

Query  241  KQFIDGKKDKRVQINVKISPSAKSALDRLTRERKTTQQAILEQLILYGRLD  291
            KQFIDGKKDKRVQINVKISPSAKSALDRLTRERKTTQQAILEQLILYGRLD
Sbjct  241  KQFIDGKKDKRVQINVKISPSAKSALDRLTRERKTTQQAILEQLILYGRLD  291

3) APECO1_3495 in NC_008563


> DQ095216|40|G40|70608378|AAZ04450.1|Escherichia_coli_APEC_O1|+|44567..45442|-|ORF_41|conserved 
hypothetical protein
Length=291

 Score =  407 bits (1531),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 262/262 (100%), Positives = 262/262 (100%), Gaps = 0/262 (0%)

Query  1    MKQYKGGYNVNRYDWKNKTTEHllndnnladnHIPEWNRKNEIAAFWFWLIMSHTVPEKL  60
            MKQYKGGYNVNRYDWKNKTTEHLLNDNNLADNHIPEWNRKNEIAAFWFWLIMSHTVPEKL
Sbjct  30   MKQYKGGYNVNRYDWKNKTTEHLLNDNNLADNHIPEWNRKNEIAAFWFWLIMSHTVPEKL  89

Query  61   KLNNESEFNSALKGVIVMKDNPMTIIPSSHETRLNVIGKWINALILYGEADRIISIMHQN  120
            KLNNESEFNSALKGVIVMKDNPMTIIPSSHETRLNVIGKWINALILYGEADRIISIMHQN
Sbjct  90   KLNNESEFNSALKGVIVMKDNPMTIIPSSHETRLNVIGKWINALILYGEADRIISIMHQN  149

Query  121  WLGLEKRNEAKWLKKNTEQLKWAWEYIDARISPTYLSWFNPVNDNERYIAIVVLLKMLFP  180
            WLGLEKRNEAKWLKKNTEQLKWAWEYIDARISPTYLSWFNPVNDNERYIAIVVLLKMLFP
Sbjct  150  WLGLEKRNEAKWLKKNTEQLKWAWEYIDARISPTYLSWFNPVNDNERYIAIVVLLKMLFP  209

Query  181  TDTPCLLTPKEFHLGFAAKERFFDKMHNAFRKQFIDGKKDKRVQINVKISPSAKSALDRL  240
            TDTPCLLTPKEFHLGFAAKERFFDKMHNAFRKQFIDGKKDKRVQINVKISPSAKSALDRL
Sbjct  210  TDTPCLLTPKEFHLGFAAKERFFDKMHNAFRKQFIDGKKDKRVQINVKISPSAKSALDRL  269

Query  241  TRERKTTQQAILEQLILYGRLD  262
            TRERKTTQQAILEQLILYGRLD
Sbjct  270  TRERKTTQQAILEQLILYGRLD  291

4) SeHA_C4687 in NC_011083


> DQ095216|40|G40|70608378|AAZ04450.1|Escherichia_coli_APEC_O1|+|44567..45442|-|ORF_41|conserved 
hypothetical protein
Length=291

 Score =  403 bits (1517),  Expect = 4e-114, Method: Compositional matrix adjust.
 Identities = 260/262 (99%), Positives = 260/262 (99%), Gaps = 0/262 (0%)

Query  1    MKQYKGGYNVNRYDWKNKTTEHllndnnladnHIPEWIRKNEIAAFWFWLIMSHTVPEKL  60
            MKQYKGGYNVNRYDWKNKTTEHLLNDNNLADNHIPEW RKNEIAAFWFWLIMSHTVPEKL
Sbjct  30   MKQYKGGYNVNRYDWKNKTTEHLLNDNNLADNHIPEWNRKNEIAAFWFWLIMSHTVPEKL  89

Query  61   KLNNESEFNSALKGVIVMKDNPMTIIPSSHETRLNVIGKWINALILYGEADRIISIMHQN  120
            KLNNESEFNSALKGVIVMKDNPMTIIPSSHETRLNVIGKWINALILYGEADRIISIMHQN
Sbjct  90   KLNNESEFNSALKGVIVMKDNPMTIIPSSHETRLNVIGKWINALILYGEADRIISIMHQN  149

Query  121  WQGLEKRNEAKWLKKNTEQLKWAWEYIDARISPTYLSWFNPVNDNERYIAIVVLLKMLFP  180
            W GLEKRNEAKWLKKNTEQLKWAWEYIDARISPTYLSWFNPVNDNERYIAIVVLLKMLFP
Sbjct  150  WLGLEKRNEAKWLKKNTEQLKWAWEYIDARISPTYLSWFNPVNDNERYIAIVVLLKMLFP  209

Query  181  TDTPCLLTPKEFHLGFAAKERFFDKMHNAFRKQFIDGKKDKRVQINVKISPSAKSALDRL  240
            TDTPCLLTPKEFHLGFAAKERFFDKMHNAFRKQFIDGKKDKRVQINVKISPSAKSALDRL
Sbjct  210  TDTPCLLTPKEFHLGFAAKERFFDKMHNAFRKQFIDGKKDKRVQINVKISPSAKSALDRL  269

Query  241  TRERKTTQQAILEQLILYGRLD  262
            TRERKTTQQAILEQLILYGRLD
Sbjct  270  TRERKTTQQAILEQLILYGRLD  291