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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpB gene of AY597277

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpB
( YP_273533.1 )

type III secretion component protein HrpB

NC_005773
(Pseudomonas syringae 1448A)

5e-46

2) HrpB
( YP_234286.1 )

type III secretion protein HrpB

NC_007005
(Pseudomonas syringae B728a)

1e-45

3) hrpB
( NP_791210.1 )

type III secretion protein HrpB

NC_004578
(Pseudomonas syringae DC3000)

3e-33

4) Pmen_0029
( YP_001185536.1 )

YscI/HrpB family type III secretion apparatus protein

NC_009439
(Pseudomonas mendocina ymp)

2e-21

• Sequence Alignments

1) hrpB in NC_005773


> AY597277|40|G40|51103011|AAT96158.1|Pseudomonas_viridiflava_LP23.1a|-|34476..34880|hrpB|-|HrpB
Length=134

 Score =  176 bits (653),  Expect = 5e-46, Method: Compositional matrix adjust.
 Identities = 103/124 (84%), Positives = 119/124 (96%), Gaps = 0/124 (0%)

Query  1    MTVSHLGNVKNISPELGQDVPQGLVSEPPQADVDIFTAATRPDNVSSGAPLSEHIASAIS  60
            +T+SHL++VK++SPEL QDVPQGLV+EP QADVD+F+AA RPD VS GAPLSEHIASAIS
Sbjct  11   VTISHLSKVKSLSPELEQDVPQGLVAEPDQADVDLFSAAMRPDAVSKGAPLSEHIASAIS  70

Query  61   GGLGETEKMSQQAMRSMKKASGSGEALDIAAMTRTLSQCSLQTALTTKVVSKTAQAIDKL  120
            GGLGETEKMSQQAMRSMKKA+GS++A+DIAAMTRTLSQCSLQTA++TKVVSKTAQA+DKL
Sbjct  71   GGLGETEKMSQQAMRSMKKAAGSADAMDIAAMTRTLSQCSLQTAFATKVVSKTAQAVDKL  130

Query  121  TNLQ  124
            TNLQ
Sbjct  131  TNLQ  134

2) HrpB in NC_007005


> AY597277|40|G40|51103011|AAT96158.1|Pseudomonas_viridiflava_LP23.1a|-|34476..34880|hrpB|-|HrpB
Length=134

 Score =  175 bits (649),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 104/124 (84%), Positives = 120/124 (97%), Gaps = 0/124 (0%)

Query  1    MTISHLGNVKSISPELGQDVPQGLVSEPAQADVDIFTAATQPDGVSSGAPLSEHIASAIS  60
            +TISHL++VKS+SPEL QDVPQGLV+EP QADVD+F+AA +PD+VS GAPLSEHIASAIS
Sbjct  11   VTISHLSKVKSLSPELEQDVPQGLVAEPDQADVDLFSAAMRPDAVSKGAPLSEHIASAIS  70

Query  61   GGLGETEKMSQQAMRSMKKASGTGDALDIAAMTRTLSQCSLQTALTTKVVSKTAQALDKL  120
            GGLGETEKMSQQAMRSMKKA+G++DA+DIAAMTRTLSQCSLQTA++TKVVSKTAQA+DKL
Sbjct  71   GGLGETEKMSQQAMRSMKKAAGSADAMDIAAMTRTLSQCSLQTAFATKVVSKTAQAVDKL  130

Query  121  TNLQ  124
            TNLQ
Sbjct  131  TNLQ  134

3) hrpB in NC_004578


> AY597277|40|G40|51103011|AAT96158.1|Pseudomonas_viridiflava_LP23.1a|-|34476..34880|hrpB|-|HrpB
Length=134

 Score =  134 bits (491),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 79/124 (64%), Positives = 105/124 (85%), Gaps = 0/124 (0%)

Query  1    MTISQLSNLKSVSPELGQNAHQGLGSEPVQADVDLFNAAMRPDSGPAASHLSDRIASALS  60
            +TIS+LS++KS+SPEL Q+  QGL +EP QADVDLF+AAMRPD+ + ++ LS++IASA+S
Sbjct  11   VTISHLSKVKSLSPELEQDVPQGLVAEPDQADVDLFSAAMRPDAVSKGAPLSEHIASAIS  70

Query  61   ERLGSTEKLSQQALRQMKKVSNTEDPGDIVQMSRALSQCSLQMALTTKVVSKSAQALDKL  120
              LG TEK+SQQA+R MKK + + D+ DI  M+R+LSQCSLQ A++TKVVSK+AQA+DKL
Sbjct  71   GGLGETEKMSQQAMRSMKKAAGSADAMDIAAMTRTLSQCSLQTAFATKVVSKTAQAVDKL  130

Query  121  TNLQ  124
            TNLQ
Sbjct  131  TNLQ  134

4) Pmen_0029 in NC_009439


> AY597277|40|G40|51103011|AAT96158.1|Pseudomonas_viridiflava_LP23.1a|-|34476..34880|hrpB|-|HrpB
Length=134

 Score = 95.4 bits (343),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 60/122 (50%), Positives = 88/122 (73%), Gaps = 5/122 (4%)

Query  3    ISKIDGLTSPDLKLD--QGLVSEPSQADVDLFSSLMRDNGNTADQPSHLAAVIAETVNAR  60
            +SK+ +L SP+L  D  QGLV+EP QADVDLFS+ MR ++ + + P  L+  IA ++++ 
Sbjct  16   LSKVKSL-SPELEQDVPQGLVAEPDQADVDLFSAAMRPDAVSKGAP--LSEHIASAISGG  72

Query  61   MTSVDDLSRQAMRHMKEAVTGNDVSAITDMSRALSQYSLQMAVTTKVVSKTGQALEKLTN  120
            +   + +S+QAMR MK A  + D   I+ M+R+LSQ SLQ A +TKVVSKT+QA++KLTN
Sbjct  73   LGETEKMSQQAMRSMKKAAGSADAMDIAAMTRTLSQCSLQTAFATKVVSKTAQAVDKLTN  132

Query  121  MQ  122
            +Q
Sbjct  133  LQ  134