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Homologs of SH1749 gene of NC_007168_R2

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SH1749
( YP_253664.1 )

holin

NC_007168
(Staphylococcus haemolyticus JCSC1435)

9e-34

100

2) Sca_0517
( YP_002633616.1 )

putative holin

NC_012121
(Staphylococcus carnosus TM300)

3e-21

3) SA2981_0868
( YP_005741617.1 )

Holin

NC_017340
(Staphylococcus aureus 04-02981)

5e-18

4) SAAV_0873
( YP_003281796.1 )

holin, SPP1 family

NC_013450
(Staphylococcus aureus ED98)

5e-18

5) SaurJH1_0930
( YP_001316073.1 )

SPP1 family holin

NC_009632
(Staphylococcus aureus JH1)

5e-18

6) SaurJH9_0912
( YP_001246289.1 )

SPP1 family holin

NC_009487
(Staphylococcus aureus JH9)

5e-18

7) SLUG_08850
( YP_005760006.1 )

holin

NC_017353
(Staphylococcus lugdunensis N920143)

2e-15

8) llh_3465
( YP_005875292.1 )

Phage holin

NC_017492
(Lactococcus lactis A76)

1e-09

9) pi251
( NP_267214.1 )

holin

NC_002662
(Lactococcus lactis IL1403)

2e-09

10) pi148
( NP_266639.1 )

prophage pi1 protein 48

NC_002662
(Lactococcus lactis IL1403)

3e-09

11) CVCAS_1830
( YP_005869189.1 )

holin

NC_017486
(Lactococcus lactis CV56)

4e-09

12) CVCAS_2108
( YP_005869462.1 )

holin

NC_017486
(Lactococcus lactis CV56)

5e-04

13) pi306
( YP_005868409.1 )

holin

NC_017486
(Lactococcus lactis CV56)

0.001

14) pi306
( NP_267536.1 )

holin

NC_002662
(Lactococcus lactis IL1403)

0.001

15) OB0853
( NP_691774.1 )

hypothetical protein

NC_004193
(Oceanobacillus iheyensis HTE831)

0.003

• Sequence Alignments

1) SH1749 in NC_007168


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score =  136 bits (500),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MKTDAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITGVVSLLAWWKNNNFTQH  60
           MKTDAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITGVVSLLAWWKNNNFTQH
Sbjct  1   MKTDAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITGVVSLLAWWKNNNFTQH  60

Query  61  AHKGQKEINKSKAGVTGGTGSPLGDD  86
           AHKGQKEINKSKAGVTGGTGSPLGDD
Sbjct  61  AHKGQKEINKSKAGVTGGTGSPLGDD  86

2) Sca_0517 in NC_012121


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score = 95.2 bits (342),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 55/79 (70%), Positives = 69/79 (88%), Gaps = 0/79 (0%)

Query  2   DTGTIVRTILLILAWVNQALALNHISPIPVDEVTISTLITGVVSLWTWWKNNNFTHHAQK  61
           D+G+I RTI L LAW+NQ LA+N+ISPIPVDE+TIST+ITGVVSL +WWKNNNFT+HA+K
Sbjct  4   DAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITGVVSLLAWWKNNNFTQHAHK  63

Query  62  GQKVIKQSKAGTYSTGGAP  80
           GQK I++SKAG  +  G+P
Sbjct  64  GQKEINKSKAGVTGGTGSP  82

3) SA2981_0868 in NC_017340


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score = 84.4 bits (301),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 47/79 (60%), Positives = 64/79 (82%), Gaps = 0/79 (0%)

Query  2   DIGTIVRTILLIVAWINQFLAIKHISPIPVDEVFISTVVTGIVSIWTWWKNNNFTHASKK  61
           D G+I RTI L +AWINQ+LA+++ISPIPVDE+ ISTV+TG+VS+ +WWKNNNFT+ + K
Sbjct  4   DAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITGVVSLLAWWKNNNFTQHAHK  63

Query  62  GQQKIYEVKAGIQSTGGAP  80
           GQ+ I   KAG+ +  G+P
Sbjct  64  GQKEINKSKAGVTGGTGSP  82

4) SAAV_0873 in NC_013450


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score = 84.4 bits (301),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 47/79 (60%), Positives = 64/79 (82%), Gaps = 0/79 (0%)

Query  2   DIGTIVRTILLIVAWINQFLAIKHISPIPVDEVFISTVVTGIVSIWTWWKNNNFTHASKK  61
           D G+I RTI L +AWINQ+LA+++ISPIPVDE+ ISTV+TG+VS+ +WWKNNNFT+ + K
Sbjct  4   DAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITGVVSLLAWWKNNNFTQHAHK  63

Query  62  GQQKIYEVKAGIQSTGGAP  80
           GQ+ I   KAG+ +  G+P
Sbjct  64  GQKEINKSKAGVTGGTGSP  82

5) SaurJH1_0930 in NC_009632


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score = 84.4 bits (301),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 47/79 (60%), Positives = 64/79 (82%), Gaps = 0/79 (0%)

Query  2   DIGTIVRTILLIVAWINQFLAIKHISPIPVDEVFISTVVTGIVSIWTWWKNNNFTHASKK  61
           D G+I RTI L +AWINQ+LA+++ISPIPVDE+ ISTV+TG+VS+ +WWKNNNFT+ + K
Sbjct  4   DAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITGVVSLLAWWKNNNFTQHAHK  63

Query  62  GQQKIYEVKAGIQSTGGAP  80
           GQ+ I   KAG+ +  G+P
Sbjct  64  GQKEINKSKAGVTGGTGSP  82

6) SaurJH9_0912 in NC_009487


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score = 84.4 bits (301),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 47/79 (60%), Positives = 64/79 (82%), Gaps = 0/79 (0%)

Query  2   DIGTIVRTILLIVAWINQFLAIKHISPIPVDEVFISTVVTGIVSIWTWWKNNNFTHASKK  61
           D G+I RTI L +AWINQ+LA+++ISPIPVDE+ ISTV+TG+VS+ +WWKNNNFT+ + K
Sbjct  4   DAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITGVVSLLAWWKNNNFTQHAHK  63

Query  62  GQQKIYEVKAGIQSTGGAP  80
           GQ+ I   KAG+ +  G+P
Sbjct  64  GQKEINKSKAGVTGGTGSP  82

7) SLUG_08850 in NC_017353


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score = 76.0 bits (269),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 51/82 (63%), Positives = 69/82 (85%), Gaps = 0/82 (0%)

Query  1   MKTDIGSIVRTIVFILAWVNQFLATKHISPIPVDEvtissiitgvisiYTWWKNNNFTHA  60
           MKTD GSI RTI + LAW+NQ+LA ++ISPIPVDE+TIS++ITGV+S+ +WWKNNNFT+ 
Sbjct  1   MKTDAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITGVVSLLAWWKNNNFTQH  60

Query  61  AQKGQQKIHEVKSGVETTTGGA  82
           A+KGQ+ I+  K+GV   TG++
Sbjct  61  AHKGQKEINKSKAGVTGGTGSP  82

8) llh_3465 in NC_017492


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score = 56.3 bits (194),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 41/72 (57%), Positives = 55/72 (77%), Gaps = 2/72 (2%)

Query  1   MKTIDKGTLTRTILLWLAILNQILTALNINPLPLDDNTVSTVITTVFALWAWWKNNDFTH  60
           MKT D G+++RTI L LA +NQIL+   I+P+P+D+ T+STVIT V +L AWWKNN+FT+
Sbjct  1   MKT-DAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITGVVSLLAWWKNNNFTQ  59

Query  61  AAKKG-TELTKS  71
            A KG  E+ KS
Sbjct  60  HAHKGQKEINKS  71

9) pi251 in NC_002662


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score = 56.1 bits (193),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 40/72 (56%), Positives = 56/72 (78%), Gaps = 2/72 (2%)

Query  1   MKAIDKGTLTRTILLWLAILNQILTVLNMNPLPLDDNTISTVITTVFALWAWWKNNDFTH  60
           MK+ D G+++RTI L LA +NQIL++  ++P+P+D+ TISTVIT V +L AWWKNN+FT+
Sbjct  1   MKT-DAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITGVVSLLAWWKNNNFTQ  59

Query  61  AAKKG-TELTKS  71
            A KG  E+ KS
Sbjct  60  HAHKGQKEINKS  71

10) pi148 in NC_002662


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score = 55.5 bits (191),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 41/72 (57%), Positives = 55/72 (77%), Gaps = 2/72 (2%)

Query  1   MKTIDKGTLTRTVLLWLAIINQILTALGINPLPLDDNTVSTVITTVFALWAWWKNNDFTH  60
           MKT D G+++RT+ L LA INQIL+   I+P+P+D+ T+STVIT V +L AWWKNN+FT+
Sbjct  1   MKT-DAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITGVVSLLAWWKNNNFTQ  59

Query  61  AAKKG-TELTKS  71
            A KG  E+ KS
Sbjct  60  HAHKGQKEINKS  71

11) CVCAS_1830 in NC_017486


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score = 55.0 bits (189),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 40/75 (54%), Positives = 54/75 (72%), Gaps = 1/75 (1%)

Query  1   MKTIDKGTLTRTILLWLAILNQILTALGINPLPLDDNTVSTVITTVFALWAWWKNNDFTH  60
           MKT D G+++RTI L LA +NQIL+   I+P+P+D+ T+STVIT V +L AWWKNN+FT+
Sbjct  1   MKT-DAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITGVVSLLAWWKNNNFTQ  59

Query  61  AAKKGTELTKSLKNG  75
            A KG    +  K G
Sbjct  60  HAHKGQKEINKSKAG  74

12) CVCAS_2108 in NC_017486


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score = 37.7 bits (123),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 34/76 (45%), Positives = 52/76 (69%), Gaps = 6/76 (7%)

Query  1   MKTIDKGTLTRTIllvlalanqlltaSGHSVIPIDDATVTNIISTGFTVATALVSWWKNN  60
           MKT D G+++RTI L LA  NQ+L+ +  S IP+D+ T++ +I+       +L++WWKNN
Sbjct  1   MKT-DAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITG----VVSLLAWWKNN  55

Query  61  DFTHAAKKG-TELTKS  75
           +FT+ A KG  E+ KS
Sbjct  56  NFTQHAHKGQKEINKS  71

13) pi306 in NC_017486


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score = 36.6 bits (119),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 34/76 (45%), Positives = 51/76 (68%), Gaps = 6/76 (7%)

Query  1   MKTIDKGTLTRTIllvlalanqlltaSGHSVIPIDDATVTNIISTGFTVATALASWWKNN  60
           MKT D G+++RTI L LA  NQ+L+ +  S IP+D+ T++ +I+       +L +WWKNN
Sbjct  1   MKT-DAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITG----VVSLLAWWKNN  55

Query  61  DFTHAAKKG-TELTKS  75
           +FT+ A KG  E+ KS
Sbjct  56  NFTQHAHKGQKEINKS  71

14) pi306 in NC_002662


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score = 36.6 bits (119),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 34/76 (45%), Positives = 51/76 (68%), Gaps = 6/76 (7%)

Query  1   MKTIDKGTLTRTIllvlalanqlltaSGHSVIPIDDATVTNIISTGFTVATALASWWKNN  60
           MKT D G+++RTI L LA  NQ+L+ +  S IP+D+ T++ +I+       +L +WWKNN
Sbjct  1   MKT-DAGSIARTIALALAWINQILAMNRISPIPVDEMTISTVITG----VVSLLAWWKNN  55

Query  61  DFTHAAKKG-TELTKS  75
           +FT+ A KG  E+ KS
Sbjct  56  NFTQHAHKGQKEINKS  71

15) OB0853 in NC_004193


> NC_007168_R2|4|G4|70726750|YP_253664.1|Staphylococcus_haemolyticus_JCSC1435|-|2549..2809|-|SH1749|holin
Length=86

 Score = 35.6 bits (115),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 28/68 (42%), Positives = 40/68 (59%), Gaps = 7/68 (10%)

Query  2   DKGTIIRTIVLVLALTNQFLITAGYHPIPGTQELWGEILSSIFTIVATLTAWFKNNY---  58
           D G+I RTI L LA  NQ+L      PIP  +E+    +S+++T V +L AW KNN    
Sbjct  4   DAGSIARTIALALAWINQILAMNRISPIP-VDEM---TISTVITGVVSLLAWWKNNNFTQ  59

Query  59  VTYKGKKQ  66
            + KG+K+
Sbjct  60  HAHKGQKE  67