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Homologs of ssaT gene of NC_003198_P3

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ssaT
( YP_002226664.1 )

type III secretion protein

NC_011274
(Salmonella enterica 287/91)

7e-105

2) SBOV14171
( YP_008505288.1 )

type III secretion apparatus protein SpaR/YscT/HrcT

NC_022241
(Salmonella enterica 3114)

4e-100

3) SSPA1330
( YP_002142169.1 )

type III secretion protein

NC_011147
(Salmonella enterica AKU12601)

4e-100

4) ssaT
( YP_150683.1 )

type III secretion protein

NC_006511
(Salmonella enterica ATCC 9150)

4e-100

5) epaR
( YP_002040672.1 )

type III secretion apparatus protein SpaR/YscT/HrcT

NC_011080
(Salmonella enterica SL254)

4e-100

6) SEEH1578_16340
( YP_008247327.1 )

type III secretion system protein SsaT

NC_021810
(Salmonella enterica 41578)

1e-99

7) CFSAN002069_01895
( YP_008249239.1 )

type III secretion system protein SsaT

NC_021812
(Salmonella enterica CFSAN002069)

1e-99

8) ssaT
( YP_002243724.1 )

type III secretion protein

NC_011294
(Salmonella enterica P125109)

1e-99

9) epaR
( YP_002045424.1 )

type III secretion apparatus protein SpaR/YscT/HrcT

NC_011083
(Salmonella enterica SL476)

1e-99

10) ssaT
( NP_456107.1 )

putative type III secretion protein

NC_003198
(Salmonella enterica CT18)

2e-99

100

11) ssaT
( NP_805092.1 )

type III secretion protein

NC_004631
(Salmonella enterica Ty2)

2e-99

100

12) TY21A_06550
( YP_007925614.1 )

putative type III secretion protein

NC_021176
(Salmonella enterica Ty21a)

2e-99

100

13) CFSAN001992_04485
( YP_007470655.1 )

type III secretion system protein SsaT

NC_020307
(Salmonella enterica CFSAN001992)

4e-99

14) epaR
( YP_002114434.1 )

type III secretion apparatus protein SpaR/YscT/HrcT

NC_011094
(Salmonella enterica CVM19633)

4e-99

15) epaR
( YP_002146622.1 )

type III secretion apparatus protein SpaR/YscT/HrcT

NC_011149
(Salmonella enterica SL483)

5e-99

16) epaR
( YP_002215711.1 )

type III secretion apparatus protein SpaR/YscT/HrcT

NC_011205
(Salmonella enterica CT_02021853)

7e-99

17) SEEB0189_12430
( YP_008308801.1 )

type III secretion system protein SsaT

NC_021844
(Salmonella enterica CFSAN000189)

2e-98

18) ssaT
( YP_002637866.1 )

type III secretion protein

NC_012125
(Salmonella enterica RKS4594)

2e-98

19) ssaT
( YP_008480908.1 )

putative type III secretion protein

NC_022221
(Salmonella enterica CDC1983-67)

2e-98

20) I137_05710
( YP_008380652.1 )

type III secretion system protein SsaT

NC_021984
(Salmonella enterica S06004)

2e-98

21) ssaT
( YP_005212446.1 )

putative type III secretion protein

NC_016831
(Salmonella enterica RKS5078)

5e-98

22) SE451236_12970
( YP_008265620.1 )

type III secretion system protein SsaT

NC_021820
(Salmonella enterica 08-1736)

6e-98

23) ssaT
( YP_005237291.1 )

type III secretion system apparatus protein

NC_016856
(Salmonella enterica 14028S)

6e-98

24) ssaT
( YP_005396817.1 )

type III secretion protein

NC_017046
(Salmonella enterica 798)

6e-98

25) CFSAN001921_10040
( YP_008255382.1 )

type III secretion system protein SsaT

NC_021814
(Salmonella enterica CFSAN001921)

6e-98

26) STMMW_14261
( YP_005232480.1 )

putative type III secretion protein

NC_016854
(Salmonella enterica D23580)

6e-98

27) ssaT
( NP_460386.1 )

type III secretion system apparatus protein

NC_003197
(Salmonella enterica LT2)

6e-98

28) ssaT
( YP_005181265.1 )

putative type III secretion protein

NC_016810
(Salmonella enterica SL1344)

6e-98

29) ssaT
( YP_005242322.1 )

type III secretion system apparatus protein

NC_016857
(Salmonella enterica ST4/74)

6e-98

30) STMDT12_C14370
( YP_005247133.1 )

putative type III secretion protein

NC_016860
(Salmonella enterica T000240)

6e-98

31) STU288_03425
( YP_007901790.1 )

type III secretion system protein SsaT

NC_021151
(Salmonella enterica U288)

6e-98

32) ssaT
( YP_005251925.1 )

type III secretion system apparatus protein

NC_016863
(Salmonella enterica UK-1)

6e-98

33) ssaT
( YP_216429.1 )

secretion system apparatus protein SsaT

NC_006905
(Salmonella enterica SC-B67)

9e-98

34) SARI_01561
( YP_001570597.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

2e-97

35) SPAB_01904
( YP_001588127.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

2e-91

36) CFSAN002050_13500
( YP_008260611.1 )

hypothetical protein

NC_021818
(Salmonella enterica CFSAN002050)

2e-90

37) SN31241_24900
( YP_008360406.1 )

Secretion system apparatus protein ssaT

NC_021902
(Salmonella enterica USMARC-S3124.1)

1e-83

38) STBHUCCB_13780
( YP_005216936.1 )

Secretion system apparatus protein ssaT

NC_016832
(Salmonella enterica P-stx-12)

2e-83

100

39) SU5_02037
( YP_006087671.1 )

Type III secretion inner membrane protein

NC_017623
(Salmonella enterica B182)

3e-83

40) SG1307
( YP_454987.1 )

type III secretion apparatus

NC_007712
(Sodalis glossinidius morsitans)

2e-52

41) YE105_C0340
( YP_004296541.1 )

type III secretory pathway, component EscT

NC_015224
(Yersinia enterocolitica 105.5R(r))

2e-48

42) fliR1
( NP_991821.1 )

type III secretion apparatus protein

NC_005810
(Yersinia pestis 91001)

1e-44

43) A1122_03775
( YP_005520450.1 )

putative type III secretion apparatus protein

NC_017168
(Yersinia pestis A1122)

1e-44

44) epaR
( YP_001608226.1 )

type III secretion apparatus protein SpaR/YscT/HrcT

NC_010159
(Yersinia pestis Angola)

1e-44

45) YPA_4010
( YP_653916.1 )

putative type III secretion apparatus protein

NC_008150
(Yersinia pestis Antiqua)

1e-44

46) YPO0272
( YP_002345354.1 )

type III secretion apparatus protein

NC_003143
(Yersinia pestis CO92)

1e-44

47) YPD8_0241
( YP_005507324.1 )

putative type III secretion apparatus protein

NC_017160
(Yersinia pestis D182038)

1e-44

48) y0532
( NP_667869.1 )

type III secretion system component

NC_004088
(Yersinia pestis KIM)

1e-44

49) YPN_3395
( YP_649322.1 )

type III secretion apparatus protein

NC_008149
(Yersinia pestis Nepal516)

1e-44

50) YPDSF_3698
( YP_001165021.1 )

type III secretion apparatus protein

NC_009381
(Yersinia pestis Pestoides F)

1e-44

51) YPZ3_0234
( YP_003566406.1 )

putative type III secretion apparatus protein

NC_014029
(Yersinia pestis Z176003)

1e-44

52) epaR
( YP_001402766.1 )

type III secretion apparatus protein SpaR/YscT/HrcT

NC_009708
(Yersinia pseudotuberculosis IP 31758)

1e-44

53) YPTB0329
( YP_068875.1 )

type III secretion apparatus protein EscT/SsaT/YscT

NC_006155
(Yersinia pseudotuberculosis IP 32953)

1e-44

54) YPTS_0353
( YP_001870799.1 )

type III secretion protein SpaR/YscT/HrcT

NC_010634
(Yersinia pseudotuberculosis PB1/+)

1e-44

55) YPK_3900
( YP_001722618.1 )

type III secretion protein SpaR/YscT/HrcT

NC_010465
(Yersinia pseudotuberculosis YPIII)

1e-44

56) Sbal175_2389
( YP_006020946.1 )

type III secretion protein SpaR/YscT/HrcT

NC_017571
(Shewanella baltica BA175)

5e-40

57) Sbal195_2280
( YP_001554708.1 )

type III secretion protein SpaR/YscT/HrcT

NC_009997
(Shewanella baltica OS195)

5e-40

58) Sbal678_2290
( YP_005273497.1 )

type III secretion protein SpaR/YscT/HrcT

NC_016901
(Shewanella baltica OS678)

5e-40

59) Sbal117_2092
( YP_006037323.1 )

type III secretion protein SpaR/YscT/HrcT

NC_017579
(Shewanella baltica OS117)

1e-39

60) Sbal_1976
( YP_001050349.1 )

type III secretion protein SpaR/YscT/HrcT

NC_009052
(Shewanella baltica OS155)

1e-39

61) escT
( NP_902279.1 )

type III secretion system EscT protein

NC_005085
(Chromobacterium violaceum ATCC 12472)

2e-39

62) SVI_2228
( YP_003556977.1 )

type III secretion system apparatus protein, SpaR/YscT family

NC_014012
(Shewanella violacea DSS12)

2e-38

• Sequence Alignments

1) ssaT in NC_011274


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  373 bits (1401),  Expect = 7e-105, Method: Compositional matrix adjust.
 Identities = 252/259 (98%), Positives = 258/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgsAILRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLG+A+LRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFLSMPLKSISVLLTLLISFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFF+SMPLKSI VLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

2) SBOV14171 in NC_022241


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  357 bits (1341),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgsAILRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLG+A+LRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

3) epaR in NC_011080


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  357 bits (1341),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgsAILRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLG+A+LRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

4) SSPA1330 in NC_011147


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  357 bits (1341),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgsAILRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLG+A+LRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGVEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGG+EFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

5) ssaT in NC_006511


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  357 bits (1341),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgsAILRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLG+A+LRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGVEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGG+EFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

6) ssaT in NC_011294


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  355 bits (1335),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 254/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgsAILRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLG+A+LRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

7) SEEH1578_16340 in NC_021810


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  355 bits (1335),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 254/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgsAILRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLG+A+LRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

8) CFSAN002069_01895 in NC_021812


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  355 bits (1335),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 254/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgsAILRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLG+A+LRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

9) epaR in NC_011083


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  355 bits (1335),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 254/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgsAILRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLG+A+LRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

10) ssaT in NC_003198


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  355 bits (1333),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 259/259 (100%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MTQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

11) TY21A_06550 in NC_021176


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  355 bits (1333),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 259/259 (100%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MTQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

12) ssaT in NC_004631


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  355 bits (1333),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 259/259 (100%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MTQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

13) CFSAN001992_04485 in NC_020307


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  353 bits (1327),  Expect = 4e-99, Method: Compositional matrix adjust.
 Identities = 256/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgsallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLG+ALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSVPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFS+PAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

14) epaR in NC_011094


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  353 bits (1327),  Expect = 4e-99, Method: Compositional matrix adjust.
 Identities = 256/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgsallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLG+ALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSVPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFS+PAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

15) epaR in NC_011149


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  353 bits (1327),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 256/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCVSFSVPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLC+SFS+PAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

16) epaR in NC_011205


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  353 bits (1325),  Expect = 7e-99, Method: Compositional matrix adjust.
 Identities = 256/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCVSFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLC+SFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

17) SEEB0189_12430 in NC_021844


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  351 bits (1319),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 256/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

18) ssaT in NC_012125


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  351 bits (1319),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 256/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

19) ssaT in NC_022221


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  351 bits (1319),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 251/259 (97%), Positives = 257/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAAAFIRplslslllpllksgslgsAILRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALA AFIRPLSLSLLLPLLKSGSLG+A+LRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCIRFSLPAIICMVLADLALGLLNRSAQQLNVFFLSMPlksilvlltllisFPYALHH  240
            YQLCI FSLPAIICMVLADLALGLLNRSAQQLNVFF+SMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

20) I137_05710 in NC_021984


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  351 bits (1319),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 251/259 (97%), Positives = 257/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAAAFIRplslslllpllksgslgsAILRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALA AFIRPLSLSLLLPLLKSGSLG+A+LRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCIRFSLPAIICMVLADLALGLLNRSAQQLNVFFLSMPlksilvlltllisFPYALHH  240
            YQLCI FSLPAIICMVLADLALGLLNRSAQQLNVFF+SMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

21) ssaT in NC_016831


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  350 bits (1314),  Expect = 5e-98, Method: Compositional matrix adjust.
 Identities = 250/259 (97%), Positives = 257/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAAAFIRplslslllpllksgslgsAILRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALA AFIRPLSLSLLLPLLKSGSLG+A+LRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCIRFSLPAIICMVLADLALGLLNRSAQQLNVFFLSMPlksilvlltllisFPYALHH  240
            YQLCI FSLPAIICMVLADLALGLLNRSAQQLNVFF+SMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESGKFYIYLKDWFPSV  259
            YLVES+KFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

22) SE451236_12970 in NC_021820


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  349 bits (1312),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGF IGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

23) ssaT in NC_016856


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  349 bits (1312),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGF IGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

24) ssaT in NC_017046


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  349 bits (1312),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGF IGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

25) STMMW_14261 in NC_016854


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  349 bits (1312),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGF IGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

26) ssaT in NC_003197


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  349 bits (1312),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGF IGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

27) ssaT in NC_016810


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  349 bits (1312),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGF IGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

28) ssaT in NC_016857


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  349 bits (1312),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGF IGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

29) STMDT12_C14370 in NC_016860


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  349 bits (1312),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGF IGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

30) STU288_03425 in NC_021151


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  349 bits (1312),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGF IGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

31) ssaT in NC_016863


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  349 bits (1312),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGF IGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

32) CFSAN001921_10040 in NC_021814


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  349 bits (1312),  Expect = 6e-98, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 258/259 (99%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGF IGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

33) ssaT in NC_006905


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  349 bits (1311),  Expect = 9e-98, Method: Compositional matrix adjust.
 Identities = 255/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)

Query  1    MAQQVNEWLIALAVAFIRplslslllpllksgslgaallRNGVLMSLTFPILPIIYQQKI  60
            M+QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  120
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  180
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFLSMPlksilvlltllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFF+SMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKDWFPSV  259
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

34) SARI_01561 in NC_010067


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  348 bits (1307),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 241/259 (94%), Positives = 253/259 (98%), Gaps = 0/259 (0%)

Query  1    MTQQLNEWIIVLAVAFIRplglslllpllksgslgTELLRNGVLISLTFPVLPIIYQQHI  60
            MTQQ+NEW+I LAVAFIRPL+LSLLLPLLKSGSLG+ LLRNGVL+SLTFP+LPIIYQQ I
Sbjct  1    MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKI  60

Query  61   FMHVGKDYSWLGLITGEIIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGAIFNSTMEA  120
             MH+GKDYSWLGL+TGE+IIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMG+IFNSTMEA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  121  ETSLFGLLFSQFLCMIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQVEWRTL  180
            ETSLFGLLFSQFLC+IFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQ EWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvllmllisFPYALHH  240
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLL LLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  241  YLVESDKFYIYLKNWFPSV  259
            YLVESDKFYIYLK+WFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

35) SPAB_01904 in NC_010102


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  327 bits (1228),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDT  60
            MSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDT
Sbjct  45   MSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDT  104

Query  61   LRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLL  120
            LRGATMGTIFNST+EAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLL
Sbjct  105  LRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLL  164

Query  121  FDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksi  180
            FDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSI
Sbjct  165  FDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSI  224

Query  181  lvlltllisFPYALHHYLVESDKFYIYLKDWFPSV  215
            LVLLTLLISFPYALHHYLVESDKFYIYLKDWFPSV
Sbjct  225  LVLLTLLISFPYALHHYLVESDKFYIYLKDWFPSV  259

36) CFSAN002050_13500 in NC_021818


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  324 bits (1217),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 213/215 (99%), Positives = 214/215 (99%), Gaps = 0/215 (0%)

Query  1    MSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDT  60
            MSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDT
Sbjct  45   MSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDT  104

Query  61   LRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGCTLL  120
            LRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPG TLL
Sbjct  105  LRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLL  164

Query  121  FDRQFLKYIQAEWRTLYQLCVSFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksi  180
            FDRQFLKYIQAEWRTLYQLC+SFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSI
Sbjct  165  FDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSI  224

Query  181  lvlltllisFPYALHHYLVESDKFYIYLKDWFPSV  215
            LVLLTLLISFPYALHHYLVESDKFYIYLKDWFPSV
Sbjct  225  LVLLTLLISFPYALHHYLVESDKFYIYLKDWFPSV  259

37) SN31241_24900 in NC_021902


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  302 bits (1131),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 198/199 (99%), Positives = 199/199 (100%), Gaps = 0/199 (0%)

Query  1    MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  60
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  61   ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  120
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  121  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  180
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  181  YLVESDKFYIYLKDWFPSV  199
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

38) STBHUCCB_13780 in NC_016832


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  301 bits (1128),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 198/198 (100%), Positives = 198/198 (100%), Gaps = 0/198 (0%)

Query  1    MHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEAE  60
            MHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEAE
Sbjct  62   MHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEAE  121

Query  61   TSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTLY  120
            TSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTLY
Sbjct  122  TSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTLY  181

Query  121  QLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHHY  180
            QLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHHY
Sbjct  182  QLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHHY  241

Query  181  LVESDKFYIYLKDWFPSV  198
            LVESDKFYIYLKDWFPSV
Sbjct  242  LVESDKFYIYLKDWFPSV  259

39) SU5_02037 in NC_017623


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  300 bits (1125),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 197/199 (99%), Positives = 199/199 (100%), Gaps = 0/199 (0%)

Query  1    MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEA  60
            MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNST+EA
Sbjct  61   MMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEA  120

Query  61   ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTL  120
            ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFD+QFLKYIQAEWRTL
Sbjct  121  ETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTL  180

Query  121  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPlksilvlltllisFPYALHH  180
            YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH
Sbjct  181  YQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHH  240

Query  181  YLVESDKFYIYLKDWFPSV  199
            YLVESDKFYIYLKDWFPSV
Sbjct  241  YLVESDKFYIYLKDWFPSV  259

40) SG1307 in NC_007712


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  198 bits (736),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 131/225 (59%), Positives = 189/225 (84%), Gaps = 8/225 (3%)

Query  34   GSALIRNGVLLALIIPMLPLVYKQAAPLR-----GWGLLERVPGELLIGVILGFCAAIPF  88
            G+AL+RNGVL++L +P+LP++Y+Q   ++     +W  L  V GE++IG ++GFCAA+PF
Sbjct  35   GAALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSW--LGLVTGEVIIGFLIGFCAAVPF  92

Query  89   WAVDMAGFLIDTLRGATMGSVYNPSMAMQTSLFGLLFSQFLCAlfflggginlllSALYD  148
            WAVDMAGFL+DTLRGATMG+++N++M  +TSLFGLLFSQFLC +FF++GG++++L+ LY+
Sbjct  93   WAVDMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYE  152

Query  149  SYRAFPPGTTLALDRRLFDFILTQWQLLYCLCLSFSLPAVLSMILADLALGLINRSARQL  208
            SY+ +PPG TL +DR+++ +I ++W+ LY LC+SFSLPA++ M+LADLALGL+NRSA+QL
Sbjct  153  SYQYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQL  212

Query  209  NVFFLSMPIKsalalllllvslPYAFHHYLQETETLYQALTKAWL  253
            NVFF+SMP+KS L LL LL+S+PYA+HHYL E++ +Y  L K W+
Sbjct  213  NVFFFSMPLKSILVLLTLLISFPYALHHYLVESDKFYIYL-KDWF  256

41) YE105_C0340 in NC_015224


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  185 bits (687),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 127/245 (52%), Positives = 200/245 (82%), Gaps = 1/245 (0%)

Query  2    HDSLHWLGALGLAMMRPYGMLLILPLFTARSLGSSLLRNSVVFAIALPVTPIFFTTSLLY  61
            ++  +WL AL++A +RP ++ L+LPL+ + SLG++LLRN+V+ ++++P+ PI++   ++ 
Sbjct  3    QQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKIMM  62

Query  62   HDSLT-GWFWVLCIELMVGVLIGFVAALPFWAIDMAGFLIDTLRGATMSTLFNPSMGMES  120
            H +   +W+ ++  E+++G LIGF AA+PFWA+DMAGFL+DTLRGATM+T+FN++M  E+
Sbjct  63   HIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEAET  122

Query  121  SIFGVLFTQILTVLFLISGGFNLVLTALYSSYEILPAGSGIQPTSAILQFLQSEWQLMYE  180
            S+FG+LF+Q+L V+F+ISGG +++L  LY SY+ LP+G  +     +L+++Q+EW+ +Y+
Sbjct  123  SLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTLYQ  182

Query  181  LCLSFALPAMLVMVLADLSLGLINRSSQQLNVFFLAMPIKSalalllllislpyalHHYL  240
            LC+SF+LPA++ MVLADL+LGL+NRS+QQLNVFF++MP+KS L LL LLIS+PYALHHYL
Sbjct  183  LCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHHYL  242

Query  241  VGINQ  245
            V  ++
Sbjct  243  VESDK  247

42) A1122_03775 in NC_017168


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 162/199 (82%), Gaps = 1/199 (0%)

Query  43   IVAIALPVTPLFLSAPIITN-SSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLID  101
            ++++++P+ P++    I+ + +   +W+G++  E++IG ++GF AA+PFWA++MAGFL+D
Sbjct  44   LMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLD  103

Query  102  TLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGI  161
            TLRGATM+T+FN+ M  E+SLFG+LF+Q+L V+F+ISGG + +L  LY SY+ LP G+ +
Sbjct  104  TLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL  163

Query  162  QPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKs  221
                ++L ++Q+EW+ +++LC+ F+LPA++ MVLADL+LGL+NRSA+QLNVFF++MP+KS
Sbjct  164  LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS  223

Query  222  alalflllislPYGLHHYL  240
             L L+ LLIS+PY+LHHYL
Sbjct  224  ILVLLTLLISFPYALHHYL  242

43) epaR in NC_010159


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 162/199 (82%), Gaps = 1/199 (0%)

Query  43   IVAIALPVTPLFLSAPIITN-SSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLID  101
            ++++++P+ P++    I+ + +   +W+G++  E++IG ++GF AA+PFWA++MAGFL+D
Sbjct  44   LMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLD  103

Query  102  TLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGI  161
            TLRGATM+T+FN+ M  E+SLFG+LF+Q+L V+F+ISGG + +L  LY SY+ LP G+ +
Sbjct  104  TLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL  163

Query  162  QPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKs  221
                ++L ++Q+EW+ +++LC+ F+LPA++ MVLADL+LGL+NRSA+QLNVFF++MP+KS
Sbjct  164  LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS  223

Query  222  alalflllislPYGLHHYL  240
             L L+ LLIS+PY+LHHYL
Sbjct  224  ILVLLTLLISFPYALHHYL  242

44) YPA_4010 in NC_008150


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 162/199 (82%), Gaps = 1/199 (0%)

Query  43   IVAIALPVTPLFLSAPIITN-SSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLID  101
            ++++++P+ P++    I+ + +   +W+G++  E++IG ++GF AA+PFWA++MAGFL+D
Sbjct  44   LMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLD  103

Query  102  TLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGI  161
            TLRGATM+T+FN+ M  E+SLFG+LF+Q+L V+F+ISGG + +L  LY SY+ LP G+ +
Sbjct  104  TLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL  163

Query  162  QPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKs  221
                ++L ++Q+EW+ +++LC+ F+LPA++ MVLADL+LGL+NRSA+QLNVFF++MP+KS
Sbjct  164  LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS  223

Query  222  alalflllislPYGLHHYL  240
             L L+ LLIS+PY+LHHYL
Sbjct  224  ILVLLTLLISFPYALHHYL  242

45) fliR1 in NC_005810


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 162/199 (82%), Gaps = 1/199 (0%)

Query  43   IVAIALPVTPLFLSAPIITN-SSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLID  101
            ++++++P+ P++    I+ + +   +W+G++  E++IG ++GF AA+PFWA++MAGFL+D
Sbjct  44   LMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLD  103

Query  102  TLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGI  161
            TLRGATM+T+FN+ M  E+SLFG+LF+Q+L V+F+ISGG + +L  LY SY+ LP G+ +
Sbjct  104  TLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL  163

Query  162  QPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKs  221
                ++L ++Q+EW+ +++LC+ F+LPA++ MVLADL+LGL+NRSA+QLNVFF++MP+KS
Sbjct  164  LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS  223

Query  222  alalflllislPYGLHHYL  240
             L L+ LLIS+PY+LHHYL
Sbjct  224  ILVLLTLLISFPYALHHYL  242

46) YPO0272 in NC_003143


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 162/199 (82%), Gaps = 1/199 (0%)

Query  43   IVAIALPVTPLFLSAPIITN-SSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLID  101
            ++++++P+ P++    I+ + +   +W+G++  E++IG ++GF AA+PFWA++MAGFL+D
Sbjct  44   LMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLD  103

Query  102  TLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGI  161
            TLRGATM+T+FN+ M  E+SLFG+LF+Q+L V+F+ISGG + +L  LY SY+ LP G+ +
Sbjct  104  TLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL  163

Query  162  QPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKs  221
                ++L ++Q+EW+ +++LC+ F+LPA++ MVLADL+LGL+NRSA+QLNVFF++MP+KS
Sbjct  164  LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS  223

Query  222  alalflllislPYGLHHYL  240
             L L+ LLIS+PY+LHHYL
Sbjct  224  ILVLLTLLISFPYALHHYL  242

47) YPD8_0241 in NC_017160


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 162/199 (82%), Gaps = 1/199 (0%)

Query  43   IVAIALPVTPLFLSAPIITN-SSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLID  101
            ++++++P+ P++    I+ + +   +W+G++  E++IG ++GF AA+PFWA++MAGFL+D
Sbjct  44   LMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLD  103

Query  102  TLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGI  161
            TLRGATM+T+FN+ M  E+SLFG+LF+Q+L V+F+ISGG + +L  LY SY+ LP G+ +
Sbjct  104  TLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL  163

Query  162  QPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKs  221
                ++L ++Q+EW+ +++LC+ F+LPA++ MVLADL+LGL+NRSA+QLNVFF++MP+KS
Sbjct  164  LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS  223

Query  222  alalflllislPYGLHHYL  240
             L L+ LLIS+PY+LHHYL
Sbjct  224  ILVLLTLLISFPYALHHYL  242

48) y0532 in NC_004088


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 162/199 (82%), Gaps = 1/199 (0%)

Query  43   IVAIALPVTPLFLSAPIITN-SSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLID  101
            ++++++P+ P++    I+ + +   +W+G++  E++IG ++GF AA+PFWA++MAGFL+D
Sbjct  44   LMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLD  103

Query  102  TLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGI  161
            TLRGATM+T+FN+ M  E+SLFG+LF+Q+L V+F+ISGG + +L  LY SY+ LP G+ +
Sbjct  104  TLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL  163

Query  162  QPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKs  221
                ++L ++Q+EW+ +++LC+ F+LPA++ MVLADL+LGL+NRSA+QLNVFF++MP+KS
Sbjct  164  LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS  223

Query  222  alalflllislPYGLHHYL  240
             L L+ LLIS+PY+LHHYL
Sbjct  224  ILVLLTLLISFPYALHHYL  242

49) YPN_3395 in NC_008149


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 162/199 (82%), Gaps = 1/199 (0%)

Query  43   IVAIALPVTPLFLSAPIITN-SSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLID  101
            ++++++P+ P++    I+ + +   +W+G++  E++IG ++GF AA+PFWA++MAGFL+D
Sbjct  44   LMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLD  103

Query  102  TLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGI  161
            TLRGATM+T+FN+ M  E+SLFG+LF+Q+L V+F+ISGG + +L  LY SY+ LP G+ +
Sbjct  104  TLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL  163

Query  162  QPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKs  221
                ++L ++Q+EW+ +++LC+ F+LPA++ MVLADL+LGL+NRSA+QLNVFF++MP+KS
Sbjct  164  LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS  223

Query  222  alalflllislPYGLHHYL  240
             L L+ LLIS+PY+LHHYL
Sbjct  224  ILVLLTLLISFPYALHHYL  242

50) YPDSF_3698 in NC_009381


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 162/199 (82%), Gaps = 1/199 (0%)

Query  43   IVAIALPVTPLFLSAPIITN-SSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLID  101
            ++++++P+ P++    I+ + +   +W+G++  E++IG ++GF AA+PFWA++MAGFL+D
Sbjct  44   LMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLD  103

Query  102  TLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGI  161
            TLRGATM+T+FN+ M  E+SLFG+LF+Q+L V+F+ISGG + +L  LY SY+ LP G+ +
Sbjct  104  TLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL  163

Query  162  QPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKs  221
                ++L ++Q+EW+ +++LC+ F+LPA++ MVLADL+LGL+NRSA+QLNVFF++MP+KS
Sbjct  164  LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS  223

Query  222  alalflllislPYGLHHYL  240
             L L+ LLIS+PY+LHHYL
Sbjct  224  ILVLLTLLISFPYALHHYL  242

51) YPZ3_0234 in NC_014029


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 162/199 (82%), Gaps = 1/199 (0%)

Query  43   IVAIALPVTPLFLSAPIITN-SSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLID  101
            ++++++P+ P++    I+ + +   +W+G++  E++IG ++GF AA+PFWA++MAGFL+D
Sbjct  44   LMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLD  103

Query  102  TLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGI  161
            TLRGATM+T+FN+ M  E+SLFG+LF+Q+L V+F+ISGG + +L  LY SY+ LP G+ +
Sbjct  104  TLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL  163

Query  162  QPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKs  221
                ++L ++Q+EW+ +++LC+ F+LPA++ MVLADL+LGL+NRSA+QLNVFF++MP+KS
Sbjct  164  LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS  223

Query  222  alalflllislPYGLHHYL  240
             L L+ LLIS+PY+LHHYL
Sbjct  224  ILVLLTLLISFPYALHHYL  242

52) epaR in NC_009708


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 162/199 (82%), Gaps = 1/199 (0%)

Query  43   IVAIALPVTPLFLSAPIITN-SSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLID  101
            ++++++P+ P++    I+ + +   +W+G++  E++IG ++GF AA+PFWA++MAGFL+D
Sbjct  44   LMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLD  103

Query  102  TLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGI  161
            TLRGATM+T+FN+ M  E+SLFG+LF+Q+L V+F+ISGG + +L  LY SY+ LP G+ +
Sbjct  104  TLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL  163

Query  162  QPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKs  221
                ++L ++Q+EW+ +++LC+ F+LPA++ MVLADL+LGL+NRSA+QLNVFF++MP+KS
Sbjct  164  LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS  223

Query  222  alalflllislPYGLHHYL  240
             L L+ LLIS+PY+LHHYL
Sbjct  224  ILVLLTLLISFPYALHHYL  242

53) YPTB0329 in NC_006155


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 162/199 (82%), Gaps = 1/199 (0%)

Query  43   IVAIALPVTPLFLSAPIITN-SSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLID  101
            ++++++P+ P++    I+ + +   +W+G++  E++IG ++GF AA+PFWA++MAGFL+D
Sbjct  44   LMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLD  103

Query  102  TLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGI  161
            TLRGATM+T+FN+ M  E+SLFG+LF+Q+L V+F+ISGG + +L  LY SY+ LP G+ +
Sbjct  104  TLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL  163

Query  162  QPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKs  221
                ++L ++Q+EW+ +++LC+ F+LPA++ MVLADL+LGL+NRSA+QLNVFF++MP+KS
Sbjct  164  LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS  223

Query  222  alalflllislPYGLHHYL  240
             L L+ LLIS+PY+LHHYL
Sbjct  224  ILVLLTLLISFPYALHHYL  242

54) YPTS_0353 in NC_010634


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 162/199 (82%), Gaps = 1/199 (0%)

Query  43   IVAIALPVTPLFLSAPIITN-SSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLID  101
            ++++++P+ P++    I+ + +   +W+G++  E++IG ++GF AA+PFWA++MAGFL+D
Sbjct  44   LMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLD  103

Query  102  TLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGI  161
            TLRGATM+T+FN+ M  E+SLFG+LF+Q+L V+F+ISGG + +L  LY SY+ LP G+ +
Sbjct  104  TLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL  163

Query  162  QPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKs  221
                ++L ++Q+EW+ +++LC+ F+LPA++ MVLADL+LGL+NRSA+QLNVFF++MP+KS
Sbjct  164  LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS  223

Query  222  alalflllislPYGLHHYL  240
             L L+ LLIS+PY+LHHYL
Sbjct  224  ILVLLTLLISFPYALHHYL  242

55) YPK_3900 in NC_010465


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  173 bits (640),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 102/199 (52%), Positives = 162/199 (82%), Gaps = 1/199 (0%)

Query  43   IVAIALPVTPLFLSAPIITN-SSPVTWIGVLCTELLIGVVMGFVAALPFWAMNMAGFLID  101
            ++++++P+ P++    I+ + +   +W+G++  E++IG ++GF AA+PFWA++MAGFL+D
Sbjct  44   LMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLD  103

Query  102  TLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQGI  161
            TLRGATM+T+FN+ M  E+SLFG+LF+Q+L V+F+ISGG + +L  LY SY+ LP G+ +
Sbjct  104  TLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTL  163

Query  162  QPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKs  221
                ++L ++Q+EW+ +++LC+ F+LPA++ MVLADL+LGL+NRSA+QLNVFF++MP+KS
Sbjct  164  LFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKS  223

Query  222  alalflllislPYGLHHYL  240
             L L+ LLIS+PY+LHHYL
Sbjct  224  ILVLLTLLISFPYALHHYL  242

56) Sbal175_2389 in NC_017571


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  157 bits (580),  Expect = 5e-40, Method: Compositional matrix adjust.
 Identities = 101/208 (49%), Positives = 165/208 (80%), Gaps = 0/208 (0%)

Query  39   GSALIRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGKEMIVGVLLGFCAAIPFWA  98
            G+AL+RN++++ +++P +  + + + +++ +     ++L   E+I+G L+GFCAA+PFWA
Sbjct  35   GAALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWA  94

Query  99   IDMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMlftqvltvlflvSGGFNFLLTALYQSY  158
            +DMAGF++DT+RGA+M+T++N+ M  ++S++G+LF+Q L V+F++SGG +F+L  LY+SY
Sbjct  95   VDMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESY  154

Query  159  QQLPPGFNLTLAQPLMMFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNV  218
            Q LPPG  L + + ++ +I  EW+ + QLC+SF++PA++ M+L D+ALGL+NRSAQQLNV
Sbjct  155  QYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNV  214

Query  219  FFLSMPIKSAlvllllIYSLQFALSHYL  246
            FF+SMP+KS LVLL L+ S+ +AL HYL
Sbjct  215  FFFSMPLKSILVLLTLLISFPYALHHYL  242

57) Sbal195_2280 in NC_009997


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  157 bits (581),  Expect = 5e-40, Method: Compositional matrix adjust.
 Identities = 101/208 (49%), Positives = 165/208 (80%), Gaps = 0/208 (0%)

Query  39   GSALIRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGKEIIVGMLLGFCAAIPFWA  98
            G+AL+RN++++ +++P +  + + + +++ +     ++L   E+I+G L+GFCAA+PFWA
Sbjct  35   GAALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWA  94

Query  99   IDMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMlftqvltvlflvSGGFNFLLTALYQSY  158
            +DMAGF++DT+RGA+M+T++N+ M  ++S++G+LF+Q L V+F++SGG +F+L  LY+SY
Sbjct  95   VDMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESY  154

Query  159  QQLPPGFNLTLSQPLMVFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNV  218
            Q LPPG  L + + ++ +I  EW+ + QLC+SF++PA++ M+L D+ALGL+NRSAQQLNV
Sbjct  155  QYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNV  214

Query  219  FFLSMPIKSAlvllllIYSLQFALSHYL  246
            FF+SMP+KS LVLL L+ S+ +AL HYL
Sbjct  215  FFFSMPLKSILVLLTLLISFPYALHHYL  242

58) Sbal678_2290 in NC_016901


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  157 bits (581),  Expect = 5e-40, Method: Compositional matrix adjust.
 Identities = 101/208 (49%), Positives = 165/208 (80%), Gaps = 0/208 (0%)

Query  39   GSALIRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGKEIIVGMLLGFCAAIPFWA  98
            G+AL+RN++++ +++P +  + + + +++ +     ++L   E+I+G L+GFCAA+PFWA
Sbjct  35   GAALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWA  94

Query  99   IDMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMlftqvltvlflvSGGFNFLLTALYQSY  158
            +DMAGF++DT+RGA+M+T++N+ M  ++S++G+LF+Q L V+F++SGG +F+L  LY+SY
Sbjct  95   VDMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESY  154

Query  159  QQLPPGFNLTLSQPLMVFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNV  218
            Q LPPG  L + + ++ +I  EW+ + QLC+SF++PA++ M+L D+ALGL+NRSAQQLNV
Sbjct  155  QYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNV  214

Query  219  FFLSMPIKSAlvllllIYSLQFALSHYL  246
            FF+SMP+KS LVLL L+ S+ +AL HYL
Sbjct  215  FFFSMPLKSILVLLTLLISFPYALHHYL  242

59) Sbal117_2092 in NC_017579


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  156 bits (577),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 101/208 (49%), Positives = 165/208 (80%), Gaps = 0/208 (0%)

Query  39   GSALIRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGKEMIVGVLLGFCAAIPFWA  98
            G+AL+RN++++ +++P +  + + + +++ +     ++L   E+I+G L+GFCAA+PFWA
Sbjct  35   GAALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWA  94

Query  99   IDMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMlftqvltvlflvSGGFNFLLTALYQSY  158
            +DMAGF++DT+RGA+M+T++N+ M  ++S++G+LF+Q L V+F++SGG +F+L  LY+SY
Sbjct  95   VDMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESY  154

Query  159  QQLPPGFNLTLAQPLMVFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNV  218
            Q LPPG  L + + ++ +I  EW+ + QLC+SF++PA++ M+L D+ALGL+NRSAQQLNV
Sbjct  155  QYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNV  214

Query  219  FFLSMPIKSAlvllllIYSLQFALSHYL  246
            FF+SMP+KS LVLL L+ S+ +AL HYL
Sbjct  215  FFFSMPLKSILVLLTLLISFPYALHHYL  242

60) Sbal_1976 in NC_009052


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  156 bits (577),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 101/208 (49%), Positives = 165/208 (80%), Gaps = 0/208 (0%)

Query  39   GSALIRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGKEMIVGVLLGFCAAIPFWA  98
            G+AL+RN++++ +++P +  + + + +++ +     ++L   E+I+G L+GFCAA+PFWA
Sbjct  35   GAALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWA  94

Query  99   IDMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMlftqvltvlflvSGGFNFLLTALYQSY  158
            +DMAGF++DT+RGA+M+T++N+ M  ++S++G+LF+Q L V+F++SGG +F+L  LY+SY
Sbjct  95   VDMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESY  154

Query  159  QQLPPGFNLTLAQPLMVFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNV  218
            Q LPPG  L + + ++ +I  EW+ + QLC+SF++PA++ M+L D+ALGL+NRSAQQLNV
Sbjct  155  QYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNV  214

Query  219  FFLSMPIKSAlvllllIYSLQFALSHYL  246
            FF+SMP+KS LVLL L+ S+ +AL HYL
Sbjct  215  FFFSMPLKSILVLLTLLISFPYALHHYL  242

61) escT in NC_005085


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  155 bits (572),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 111/245 (46%), Positives = 191/245 (78%), Gaps = 6/245 (2%)

Query  5    TQWLPVLGLCMLRPLGVFLLMPLFSTANLGGALIRNSLVLMIALPLLPV-YPQWQLPAAG  63
             +WL  L++  +RPL++ LL+PL+ +++LG+AL+RN++++ +++P+LP+ Y Q  +   G
Sbjct  6    NEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKIMMHIG  65

Query  64   ---AWGYVLLAAGEICIGLMIGFCAAIPFWVLDMAGFLIDTMRGSSMASVLNPllgqqss  120
               +W  + L +GE+ IG++IGFCAA+PFW +DMAGFL+DT+RG++M++++N+ +  ++S
Sbjct  66   KDYSW--LGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEAETS  123

Query  121  lfgllfTQIFGVLFLISGGFNELLEAIYQSYVTLPPGAAIHYSPEALSFFYRQWQLMYEL  180
            LFGLLF+Q++ V+F+ISGG + +L+ +Y+SY  LPPG ++ +  + L ++  +W+ +Y+L
Sbjct  124  LFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTLYQL  183

Query  181  CLRFSMPAIVVILLVDMALGLVNRSAQQLNVFFLSMPIKSAFALLMLIVSLSFAFNGLLD  240
            C+ FS+PAI+ ++L D+ALGL+NRSAQQLNVFF+SMP+KS + LL L++S+++A++  L 
Sbjct  184  CISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYALHHYLV  243

Query  241  YSAHF  245
             S  F
Sbjct  244  ESDKF  248

62) SVI_2228 in NC_014012


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  152 bits (559),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 100/208 (49%), Positives = 165/208 (80%), Gaps = 0/208 (0%)

Query  2    GSALIRNSLVLLFALPTLHAMADMQEVILQADILGVVNLYGKEILVGFLLGFCAAIPFWA  61
            G+AL+RN++++ +++P L  + + + ++  +   + + L   E+++GFL+GFCAA+PFWA
Sbjct  35   GAALLRNGVLMSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWA  94

Query  62   IDMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMlftqvltvlflvSGGFNHLLTAMYQSY  121
            +DMAGF++DT+RGA+M+T++N+ M  ++S++G+LF+Q L V+F++SGG + +L  +Y+SY
Sbjct  95   VDMAGFLLDTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESY  154

Query  122  NELPPGFELNLSQQLLTFFNQEWLLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNV  181
            + LPPG  L + +Q+L +++ EW  + QLC+SF++PA++ M+L D+ALGL+NRSAQQLNV
Sbjct  155  QYLPPGRTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNV  214

Query  182  FFLSMPIKSAlvllllIYSLQFALSHYL  209
            FF+SMP+KS LVLL L+ S+ +AL HYL
Sbjct  215  FFFSMPLKSILVLLTLLISFPYALHHYL  242

63) epaR in NC_021173


> NC_003198_P3|4|G2|16760490|NP_456107.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|1377..2156|ssaT|-|putative 
type III secretion protein
Length=259

 Score =  149 bits (548),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 104/250 (42%), Positives = 183/250 (74%), Gaps = 6/250 (2%)

Query  3    AAMAGEWLPMVALSMLRPLGAMLLVPVFSTGTLGGTLARNALVLAISLPVLAL---HDLW  59
            +    EWL  +A++ +RPL+  LL+P++ +G+LG++L RN++++++++P+L++   + + 
Sbjct  2    TQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKIM  61

Query  60   PAVDGARSWAAYLWLACGELSIGLVIGFCAAVPFWALDMAGFLIDTMRGASMASVLNPLL  119
              ++   SW +   L  GE+ IG++IGFCAAVPFWA+DMAGFL+DT+RGA+M++++N+ +
Sbjct  62   MHIGKDYSWLG---LVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTM  118

Query  120  GQQSSMMGVVFSQVFSLLFMMFGGFHALLEALYASYLTLppgaafrfrpaaLDFLGQQWQ  179
              ++S+ G++FSQ + ++F + GG + +L+ LY SY  LPPG ++ F    L ++  +W+
Sbjct  119  EAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWR  178

Query  180  LMYTLCLRFAMPAIVAILLVDMALGLVNRSAQQLNVFFVAMPIKSAFALLLMIICANFAF  239
             +Y LC+ F++PAI+ ++L D+ALGL+NRSAQQLNVFF +MP+KS + LL ++I   +A+
Sbjct  179  TLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPYAL  238

Query  240  QLPLSESLRL  249
            +  L ES ++
Sbjct  239  HHYLVESDKF  248