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Homologs of SAR0366 gene of NC_002952_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SAA6008_00346
( YP_005743732.1 )

pathogenicity island protein, integrase

NC_017341
(Staphylococcus aureus JKD6008)

1e-178

100

2) SAR0366
( YP_039823.1 )

integrase

NC_002952
(Staphylococcus aureus MRSA252)

1e-178

100

3) SAT0131_00377
( YP_005751641.1 )

Integrase

NC_017347
(Staphylococcus aureus T0131)

1e-176

4) A284_11360
( YP_007386029.1 )

Integrase

NC_020164
(Staphylococcus warneri SG1)

3e-149

5) int
( YP_254496.1 )

integrase

NC_007168
(Staphylococcus haemolyticus JCSC1435)

5e-83

6) int
( YP_008167977.1 )

Integrase

NC_021670
(Staphylococcus aureus Bmb9393)

5e-75

7) SAAG_01239
( YP_008448745.1 )

integrase

NC_022113
(Staphylococcus aureus 55/2053)

1e-74

8) int3
( YP_005748445.1 )

prophage L54a integrase

NC_017342
(Staphylococcus aureus TCH60)

1e-74

9) SAAV_0787
( YP_003281710.1 )

pathogenicity island protein, integrase

NC_013450
(Staphylococcus aureus ED98)

1e-73

10) SARLGA251_07460
( YP_005754746.1 )

integrase

NC_017349
(Staphylococcus aureus LGA251)

3e-73

11) SLGD_02010
( YP_003472225.1 )

pathogenicity island protein, integrase

NC_013893
(Staphylococcus lugdunensis HKU09-01)

9e-73

12) SAOV_0274
( YP_005735791.1 )

putative prophage integrase

NC_017337
(Staphylococcus aureus ED133)

4e-71

13) SAB0258c
( YP_415762.1 )

phage-related integrase

NC_007622
(Staphylococcus aureus RF122)

1e-69

14) SACOL0885
( YP_185756.1 )

pathogenicity island protein, integrase

NC_002951
(Staphylococcus aureus COL)

3e-69

15) int
( YP_493499.1 )

integrase

NC_007793
(Staphylococcus aureus FPR3757)

3e-69

16) M013TW_0806
( YP_005297248.1 )

Integrase, superantigen-encoding pathogenicityislands SaPI

NC_016928
(Staphylococcus aureus M013)

3e-69

17) SA40_0754
( YP_008587399.1 )

integrase

NC_022443
(Staphylococcus aureus SA40)

3e-69

18) SA957_0769
( YP_008584867.1 )

integrase

NC_022442
(Staphylococcus aureus SA957)

3e-69

19) USA300HOU_0850
( YP_001574750.1 )

integrase

NC_010079
(Staphylococcus aureus TCH1516)

3e-69

20) int
( YP_005744209.1 )

pathogenicity island protein, integrase

NC_017341
(Staphylococcus aureus JKD6008)

2e-68

21) rbsU
( YP_005752134.1 )

Pathogenicity island protein, integrase

NC_017347
(Staphylococcus aureus T0131)

2e-68

22) SATW20_08890
( YP_005730901.1 )

integrase

NC_017331
(Staphylococcus aureus TW20)

2e-68

23) SAPIG0334
( YP_005733144.1 )

integrase

NC_017333
(Staphylococcus aureus ST398)

7e-68

24) C248_0310
( YP_006709071.1 )

phage integrase family protein

NC_018608
(Staphylococcus aureus 08BA02176)

7e-66

25) int
( YP_185210.1 )

prophage L54a, integrase

NC_002951
(Staphylococcus aureus COL)

5e-64

26) SaurJH1_0311
( YP_001315460.1 )

phage integrase family protein

NC_009632
(Staphylococcus aureus JH1)

2e-63

27) SaurJH9_0304
( YP_001245687.1 )

phage integrase family protein

NC_009487
(Staphylococcus aureus JH9)

2e-63

28) int
( YP_001331297.1 )

integrase

NC_009641
(Staphylococcus aureus Newman)

2e-63

29) SATW20_03260
( YP_005730346.1 )

phage integrase

NC_017331
(Staphylococcus aureus TW20)

2e-63

30) SaurJH1_1039
( YP_001316182.1 )

phage integrase family protein

NC_009632
(Staphylococcus aureus JH1)

4e-60

31) SaurJH9_1020
( YP_001246397.1 )

phage integrase family protein

NC_009487
(Staphylococcus aureus JH9)

4e-60

• Sequence Alignments

1) SAA6008_00346 in NC_017341


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  619 bits (2338),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 404/404 (100%), Positives = 404/404 (100%), Gaps = 0/404 (0%)

Query  1    MWVREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKH  60
            MWVREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKH
Sbjct  1    MWVREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKH  60

Query  61   YSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTY  120
            YSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTY
Sbjct  61   YSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTY  120

Query  121  LQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQA  180
            LQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQA
Sbjct  121  LQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQA  180

Query  181  KRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTD  240
            KRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTD
Sbjct  181  KRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTD  240

Query  241  NVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSInllkklmlenkk  300
            NVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKK
Sbjct  241  NVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKK  300

Query  301  enQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQ  360
            ENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQ
Sbjct  301  ENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQ  360

Query  361  LGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGIGS  404
            LGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGIGS
Sbjct  361  LGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGIGS  404

2) SAR0366 in NC_002952


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  619 bits (2338),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 404/404 (100%), Positives = 404/404 (100%), Gaps = 0/404 (0%)

Query  1    MWVREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKH  60
            MWVREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKH
Sbjct  1    MWVREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKH  60

Query  61   YSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTY  120
            YSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTY
Sbjct  61   YSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTY  120

Query  121  LQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQA  180
            LQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQA
Sbjct  121  LQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQA  180

Query  181  KRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTD  240
            KRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTD
Sbjct  181  KRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTD  240

Query  241  NVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSInllkklmlenkk  300
            NVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKK
Sbjct  241  NVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKK  300

Query  301  enQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQ  360
            ENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQ
Sbjct  301  ENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQ  360

Query  361  LGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGIGS  404
            LGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGIGS
Sbjct  361  LGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGIGS  404

3) SAT0131_00377 in NC_017347


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  612 bits (2314),  Expect = 1e-176, Method: Compositional matrix adjust.
 Identities = 375/401 (94%), Positives = 392/401 (98%), Gaps = 0/401 (0%)

Query  1    MWVREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKH  60
            MWVREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKH
Sbjct  1    MWVREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKH  60

Query  61   NSTKQLEKLTFHDVCDEWLEHYKTHSGSKPTTIKEKKSNANTVKNAIDSKVLISKITHTY  120
             STKQLE+LTFHD CDEWLEHYKTHSGSKPTTIKEKKSN+NTVKNAIDSKVLISKITHTY
Sbjct  61   YSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTY  120

Query  121  LQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNELQA  180
            LQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNE+QA
Sbjct  121  LQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQA  180

Query  181  KRNNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKKD  240
            KRNNYLEDSEVKELL+CFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIK D
Sbjct  181  KRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTD  240

Query  241  NINYEDKTLDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILDNKK  300
            N++ E+KTL+IDGTINWVTD  TGAFGVKETTKTSKSYRTIGLT+QSINLLK L+L+NKK
Sbjct  241  NVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKK  300

Query  301  ENQWNEDFIDRGYVFTNTAGSPIDLNKVNSIIKEATEISSINKRVTTHTLRHTHISTLAQ  360
            ENQWN+ FIDRGY+FTNTAGSPIDLNKVN+IIKEAT+ISSINKRVTTHTLRHTHISTLAQ
Sbjct  301  ENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQ  360

Query  361  LGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMMNKLEE  401
            LGINLKAIQ+RVGHSDYKTTLEIYTHVTD+MAKDMMNKLE 
Sbjct  361  LGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEG  401

4) A284_11360 in NC_020164


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  521 bits (1966),  Expect = 3e-149, Method: Compositional matrix adjust.
 Identities = 320/404 (80%), Positives = 361/404 (90%), Gaps = 1/404 (0%)

Query  1    MWHEKFTNKHGNVQYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQKRLNERIEAKLN  60
            MW   +T K+ +  YRY E+Y DPLT K + VSV  NKN  +SQK+AQ  LN  IE +L+
Sbjct  1    MWVREIT-KNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   DKTPTTLKSLTFHAACDEWLEYYKNHSGSKATTIKEKVSNTNTVKNSIDKEVLINNITHT  120
            + +   L +LTFH ACDEWLE YK HSGSK+TTIKEK SNTNTVKN+ID  VLI++ITHT
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YLQDIINEWAKLHSKGHVQSLVIIIRSVFKYAFKYYDLQDISVLDKIDIPKKAKTRDELQ  180
            YLQ+IINEWAK HS GHVQSLVI+IRSVFKYAFKYYDL+DISVLDKIDIPKKA+TR+E+Q
Sbjct  120  YLQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQ  179

Query  181  AKRNNYLEDSEVKELLECFDYLIKHKNHSSRKRNYNMVKAIVQFQIANGMRIGELLAIKS  240
            AKRNNYLEDSEVKELLECFDYLIKHK H++RKRNY+MVKA+V+FQI NGMRIGELLAIK+
Sbjct  180  AKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKT  239

Query  241  DNINYEDKTLDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGITTQSINLLKTLILENK  300
            DN++ E+KTL+IDGTINWVTD  TGAFGVKETTKTSKSYRTIG+T+QSINLLK L+LENK
Sbjct  240  DNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENK  299

Query  301  KENQWNDNFIDRGYIFTNTAGSPIDLNKINTIIKEATEISSIKKSVTTHTLRHTHISTLA  360
            KENQWND+FIDRGYIFTNTAGSPIDLNK+N IIKEAT+ISSI+K VTTHTLRHTHISTLA
Sbjct  300  KENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLA  359

Query  361  QLGINLKAIQERVGHSDYKTTLEIYTHVTDQMAKDMMNKLEKVG  404
            QLGINLKAIQERVGHSDYKTTLEIYTHVTD+MAKDMMNKLE +G
Sbjct  360  QLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGIG  403

5) int in NC_007168


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  301 bits (1128),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 196/405 (49%), Positives = 292/405 (73%), Gaps = 6/405 (1%)

Query  1    MWHEKFTNKHGETKYRYYEKYKDPLTNKWRRTSVVLNKNGKQSQKEAQKRLNERIEAKLN  60
            MW   +T K+  T YRY E+Y DPLT K +  SV  NKN  +SQK+AQ  LN  IE +L+
Sbjct  1    MWVREIT-KNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   DKTPTNLKTLTFHAACDEWFERYKLTSGSKQSTITTKSYKVAHIKRNIDKDILVENMNAD  120
            + +  +L  LTFH ACDEW+E+YK  SGSK +TI  K  +   +K  ID  +L+ ++   
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  VIQDLINS-SLKDGLSHKLVKDDLSIIKNILRYAQKKYHITDISYIDDVVMPKKATTREE  179
             +Q++IN  +  ++++H  V+  + +I+++++YA K Y++ DIS +D + +PKKA TR+E
Sbjct  120  YLQNIINEWAKSHSIGH--VQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNE  177

Query  180  VKAKRENYLEMAEVLAIVEELNRIANKKRASYMKRSYLFTAYIVEFQVLNGMRIGELLAI  239
             +AKR+NYLE +EV  ++E ++ + + KR +  KR+Y     +VEFQ+ NGMRIGELLAI
Sbjct  178  FQAKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAI  237

Query  240  QPDNIDFENKKLVIDGTIHWRKDGNKVGF--KDTTKTASSYRTISLTTRSCDILRRVMLE  297
            + DN+D ENK L IDGTI+W  D    +F  K+TTKT+ SYRTI+LT++S ++L+++MLE
Sbjct  238  KTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLE  297

Query  298  NKKAVQWEIMYVDRGFIFTSHRGNSLPLTSinrniqiaaqnigiEKHVTSHTMRHSHISL  357
            NKK  QW+  ++DRG+IFT+  G+++ L  +N  I+ A++  +I+K+VT+HT+RH+HIS 
Sbjct  298  NKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHIST  357

Query  358  LSQLGVSLRAIMERVGHTDHKTTLQIYSHVTEQMDKDMMNKLEKI  402
            L+QLG++L+AI ERVGH+D KTTL+IY+HVT++M KDMMNKLE I
Sbjct  358  LAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGI  402

6) int in NC_021670


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  275 bits (1027),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 188/404 (47%), Positives = 294/404 (73%), Gaps = 3/404 (0%)

Query  1    MWHEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRRLNERIEAKLN  60
            MW   +T K+  T YRY E+Y DPLT K + VSV  NKN  +SQK+AQ  LN  IE +L+
Sbjct  1    MWVREIT-KNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   DNTPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            + +   L +LTFH ACDEW+++Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            Y Q++++E      + +V+   + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E 
Sbjct  120  YLQNIINEWAKSHSIGHVQ-SLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEF  178

Query  181  KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240
            +AKRN+YLE +E++ ++  ++   +  + + +KR Y  V  + EFQ  NGMRIGE+LAI+
Sbjct  179  QAKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIK  238

Query  241  NEDIDFDNKSLNINGTIHWFHDE-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILEN  299
             +++D +NK+L+I+GTI+W  D  +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LEN
Sbjct  239  TDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLEN  298

Query  300  KKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshisll  359
            KK+++WND +++R ++FTN  G+P++ ++ N+I++EA+   +I+K V++H LRH+HIS L
Sbjct  299  KKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTL  358

Query  360  sQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            +Q G++LKAI +RVGHSD +TTL IY+HVT++M KDMMNKLE +
Sbjct  359  AQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGI  402

7) SAAG_01239 in NC_022113


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  273 bits (1022),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 187/404 (47%), Positives = 294/404 (73%), Gaps = 3/404 (0%)

Query  1    MWYEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRRLNERIEAKLN  60
            MW   +T K+  T YRY E+Y DPLT K + VSV  NKN  +SQK+AQ  LN  IE +L+
Sbjct  1    MWVREIT-KNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   DNTPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            + +   L +LTFH ACDEW+++Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            Y Q++++E      + +V+   + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E 
Sbjct  120  YLQNIINEWAKSHSIGHVQ-SLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEF  178

Query  181  KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIK  240
            +AKRN+YLE +E++ ++  ++   +  + + +KR Y  V  + EFQ  NGMRIGE+LAIK
Sbjct  179  QAKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIK  238

Query  241  NEDIDFDNKSLNINGTIHWFHDE-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILEN  299
             +++D +NK+L+I+GTI+W  D  +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LEN
Sbjct  239  TDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLEN  298

Query  300  KKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILRESAKDVGIEKEisshilrhshisll  359
            KK+++WND +++R ++FTN  G+P++ ++ N+I++E++   +I+K +++H LRH+HIS L
Sbjct  299  KKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTL  358

Query  360  sQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            +Q G++LKAI +RVGHSD +TTL IY+HVT++M KDMMNKLE +
Sbjct  359  AQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGI  402

8) int3 in NC_017342


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  273 bits (1022),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 187/404 (47%), Positives = 294/404 (73%), Gaps = 3/404 (0%)

Query  9    MWYEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRRLNERIEAKLN  68
            MW   +T K+  T YRY E+Y DPLT K + VSV  NKN  +SQK+AQ  LN  IE +L+
Sbjct  1    MWVREIT-KNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  69   DNTPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  128
            + +   L +LTFH ACDEW+++Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  129  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  188
            Y Q++++E      + +V+   + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E 
Sbjct  120  YLQNIINEWAKSHSIGHVQ-SLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEF  178

Query  189  KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIK  248
            +AKRN+YLE +E++ ++  ++   +  + + +KR Y  V  + EFQ  NGMRIGE+LAIK
Sbjct  179  QAKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIK  238

Query  249  NEDIDFDNKSLNINGTIHWFHDE-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILEN  307
             +++D +NK+L+I+GTI+W  D  +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LEN
Sbjct  239  TDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLEN  298

Query  308  KKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILRESAKDVGIEKEisshilrhshisll  367
            KK+++WND +++R ++FTN  G+P++ ++ N+I++E++   +I+K +++H LRH+HIS L
Sbjct  299  KKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTL  358

Query  368  sQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  411
            +Q G++LKAI +RVGHSD +TTL IY+HVT++M KDMMNKLE +
Sbjct  359  AQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGI  402

9) SAAV_0787 in NC_013450


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  270 bits (1009),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 186/404 (47%), Positives = 292/404 (73%), Gaps = 3/404 (0%)

Query  1    MWYEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MW   +T K+  T YRY E+Y DPLT K + VSV  NKN  +SQK+AQ  LN  IE +L+
Sbjct  1    MWVREIT-KNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   DNTPTTLKSLTFHVACDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            + +   L +LTFH ACDEW+++Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YAQQVFDELDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            Y Q++++E      + +V+   + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E 
Sbjct  120  YLQNIINEWAKSHSIGHVQ-SLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEF  178

Query  181  KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIK  240
            +AKRN+YLE +E++ ++  ++   +  + + +KR Y  V  + EFQ  NGMRIGE+LAIK
Sbjct  179  QAKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIK  238

Query  241  NEVIDFDNKSLNINGTIHWFHDE-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILEN  299
             + +D +NK+L+I+GTI+W  D  +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LEN
Sbjct  239  TDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLEN  298

Query  300  KKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILRKSAKDVGIEKEisshilrhshisll  359
            KK+++WND +++R ++FTN  G+P++ ++ N+I++ ++   +I+K +++H LRH+HIS L
Sbjct  299  KKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTL  358

Query  360  sQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            +Q G++LKAI +RVGHSD +TTL IY+HVT++M KDMMNKLE +
Sbjct  359  AQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGI  402

10) SARLGA251_07460 in NC_017349


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  269 bits (1004),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 186/404 (47%), Positives = 293/404 (73%), Gaps = 3/404 (0%)

Query  1    MWHDKFTNKHGDVQYRFYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MW   +T K+    YR+ E+Y DPLT+K + VSV  NKN  +SQK+AQ  LN  IE +L+
Sbjct  1    MWVREIT-KNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   DKTPTTLKSLTFHAASDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            + +   L +LTFH A DEW+++Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YAQQIFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            Y Q+I++E      + +V+   + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E 
Sbjct  120  YLQNIINEWAKSHSIGHVQ-SLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEF  178

Query  181  KAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQ  240
            +AKRN+YLE +E++ ++  ++   +  + + +KR Y  V  + EFQ  NGMRIGE+LAI+
Sbjct  179  QAKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIK  238

Query  241  NEDIDFDNKSLNINGTIHWFHDE-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILEN  299
             +++D +NK+L+I+GTI+W  D  +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LEN
Sbjct  239  TDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLEN  298

Query  300  KKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshisll  359
            KK+++WND +++R ++FTN  G+P++ ++ N+I++EA+   +I+K V++H LRH+HIS L
Sbjct  299  KKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTL  358

Query  360  sQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            +Q G++LKAI +RVGHSD +TTL IY+HVT++M KDMMNKLE +
Sbjct  359  AQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGI  402

11) SLGD_02010 in NC_013893


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  267 bits (998),  Expect = 9e-73, Method: Compositional matrix adjust.
 Identities = 188/405 (47%), Positives = 295/405 (73%), Gaps = 5/405 (1%)

Query  1    MWHEKFTNKHGNIQYRFYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLN  60
            MW   +T K+ +  YR+ E+Y DPLT K + VSV  NKN  +SQK+AQ  LN  IE +L+
Sbjct  1    MWVREIT-KNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   DKTPTTLKSLTFHAASDEWFQNYIKTSGSKRttiktklsklntlkkFVDEDILINKITLS  120
            + +   L +LTFH A DEW+++Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEV  180
            Y Q++++E      + +V+   + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E 
Sbjct  120  YLQNIINEWAKSHSIGHVQ-SLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEF  178

Query  181  KAKRNKYLELNEIQSIIKDIN-MKAQKMHSCIHKRFYLFVALMTEFQALNGMRIGEMLAI  239
            +AKRN+YLE +E++ ++  ++ +  +K H+  +KR Y  V  + EFQ  NGMRIGE+LAI
Sbjct  179  QAKRNNYLEDSEVKELLECFDYLIKHKRHA-TRKRNYEMVKALVEFQINNGMRIGELLAI  237

Query  240  QNEDIDFDNKSLNINGTIHWFHDE-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILE  298
            + +++D +NK+L+I+GTI+W  D  +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LE
Sbjct  238  KTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLE  297

Query  299  NKKDSKWNDGYLNRNFIFTNHKGNPMQTERFNKILREAAKDVGIDKEVsshilrhshisl  358
            NKK+++WND +++R +IFTN  G+P++ ++ N+I++EA+   +I+K V++H LRH+HIS 
Sbjct  298  NKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHIST  357

Query  359  lsQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQV  403
            L+Q G++LKAI +RVGHSD +TTL IY+HVT++M KDMMNKLE +
Sbjct  358  LAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGI  402

12) SAOV_0274 in NC_017337


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  262 bits (978),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 169/404 (42%), Positives = 279/404 (70%), Gaps = 11/404 (2%)

Query  1    MWIEKFKNKNNETSYRYYEKYKDPYTDKWKRVSVVLNKNTKQAQKEAMFRLEEKIKEKLH  60
            MW+  +  KNN T+YRY E+Y DP T+K K VSV  NKN  ++QK+A + L+  I ++L 
Sbjct  1    MWVREI-TKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   DKSSNELKTLTFHSLLDEWLEYHTKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            + S+++L  LTFH   DEWLE     SG K TT+ + K+  + +K+    ++L++KI   
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            Y+Q +INE ++  S  +V+  +  ++  +KYA K+Y+  +  +L+ + +PKK++T ++++
Sbjct  120  YLQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQ  179

Query  181  KEEAKMYNYLE---MEQVIQIRDFILNDSNMQYRARI--LVAGAVEVQALTGMRIGELLA  235
               AK  NYLE   + ++++  D+++++     R R   +V + VE Q   GMRIGELLA
Sbjct  180  ---AKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLA  236

Query  236  LQVKDVDLKNKTIDINGTIHRIK--CNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIML  293
            ++  +VD+ NKT++I+GTI+++     ++FG K+TTKT+ S R I++ ++  N+LKK+ML
Sbjct  237  IKTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLML  296

Query  294  ENKKMQQWEPNYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHIS  353
            ENKK +QW+ +++DRG+IFT   G+P++ +++N+ +  A++  +INK+VTTHTLRHTHIS
Sbjct  297  ENKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHIS  356

Query  354  LLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLE  397
             LA++ I+LKAI  RVGH+D KTT+ +YTHVT+KM +++ +KLE
Sbjct  357  TLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLE  400

13) SAB0258c in NC_007622


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  256 bits (958),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 169/404 (42%), Positives = 276/404 (69%), Gaps = 11/404 (2%)

Query  1    MWMEKFKNKNNETSYRYYEKYKDPYTDKWKRVSVALNKNTKQAQKEAMFRLEEKIKEKLH  60
            MW+  +  KNN T+YRY E+Y DP T+K K VSV+ NKN  ++QK+A + L+  I ++L 
Sbjct  1    MWVREI-TKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   DKSSSILKTLTFHSLLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            + S+  L  LTFH   DEWLE     SG K TT+ + K+  + +K+    ++L++KI   
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            Y+Q +INE ++  S  +V+  +  ++  +KYA K+Y+  +  +L+ + +PKK++T ++++
Sbjct  120  YLQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQ  179

Query  181  KEEAKMYNYLEMEQGIQIR---DFILNDNNMQYRARI--LVAGAVEVQALTGMRIGELLA  235
               AK  NYLE  +  ++    D++++++    R R   +V + VE Q   GMRIGELLA
Sbjct  180  ---AKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLA  236

Query  236  LQVKDVDLKNKTIDINGTIHRIK--CNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIML  293
            ++  +VD+ NKT++I+GTI+++     ++FG K+TTKT+ S R I++ ++  N+LKK+ML
Sbjct  237  IKTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLML  296

Query  294  ENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHIS  353
            ENKK +QW+  ++DRG+IFT   G+P++ +++N+ +  A++  +INK+VTTHTLRHTHIS
Sbjct  297  ENKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHIS  356

Query  354  LLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLE  397
             LA++ I+LKAI  RVGH+D KTT+ +YTHVT+KM +++ +KLE
Sbjct  357  TLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLE  400

14) SACOL0885 in NC_002951


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  255 bits (954),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 178/382 (47%), Positives = 282/382 (74%), Gaps = 2/382 (0%)

Query  23   DPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHVACDEWFQS  82
            DPLT+K + VSV  NKN  +SQK+AQ  LN  IE +L++ +   L +LTFH ACDEW++ 
Sbjct  22   DPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYSTKQLENLTFHDACDEWLEH  81

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDNKGYVYQVNKDA  142
            Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +Y Q++++E  +   + +V+   
Sbjct  82   YKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQNIINEWAKSHSIGHVQ-SL  140

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINT  202
            + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E +AKRN+YLE +E++ ++  ++ 
Sbjct  141  VIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQAKRNNYLEDSEVKELLECFDY  200

Query  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262
              +  + + +KR Y  V  + EFQ  NGMRIGE+LAI+ +++D +NK+L+I+GTI+W  D
Sbjct  201  LIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKTLEIDGTINWVTD  260

Query  263  E-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKG  321
              +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LENKK+++WND +++R ++FTN  G
Sbjct  261  VVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKENQWNDKFIDRGYIFTNTAG  320

Query  322  NPMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHRTT  381
            +P++ ++ N+I++EA+   +I+K V++H LRH+HIS L+Q G++LKAI +RVGHSD +TT
Sbjct  321  SPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTT  380

Query  382  LSIYSHVTEQMDKDMMNKLEQV  403
            L IY+HVT++M KDMMNKLE +
Sbjct  381  LEIYTHVTDKMAKDMMNKLEGI  402

15) M013TW_0806 in NC_016928


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  255 bits (954),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 178/382 (47%), Positives = 282/382 (74%), Gaps = 2/382 (0%)

Query  23   DPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHVACDEWFQS  82
            DPLT+K + VSV  NKN  +SQK+AQ  LN  IE +L++ +   L +LTFH ACDEW++ 
Sbjct  22   DPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYSTKQLENLTFHDACDEWLEH  81

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDNKGYVYQVNKDA  142
            Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +Y Q++++E  +   + +V+   
Sbjct  82   YKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQNIINEWAKSHSIGHVQ-SL  140

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINT  202
            + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E +AKRN+YLE +E++ ++  ++ 
Sbjct  141  VIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQAKRNNYLEDSEVKELLECFDY  200

Query  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262
              +  + + +KR Y  V  + EFQ  NGMRIGE+LAI+ +++D +NK+L+I+GTI+W  D
Sbjct  201  LIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKTLEIDGTINWVTD  260

Query  263  E-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKG  321
              +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LENKK+++WND +++R ++FTN  G
Sbjct  261  VVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKENQWNDKFIDRGYIFTNTAG  320

Query  322  NPMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHRTT  381
            +P++ ++ N+I++EA+   +I+K V++H LRH+HIS L+Q G++LKAI +RVGHSD +TT
Sbjct  321  SPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTT  380

Query  382  LSIYSHVTEQMDKDMMNKLEQV  403
            L IY+HVT++M KDMMNKLE +
Sbjct  381  LEIYTHVTDKMAKDMMNKLEGI  402

16) SA40_0754 in NC_022443


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  255 bits (954),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 178/382 (47%), Positives = 282/382 (74%), Gaps = 2/382 (0%)

Query  23   DPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHVACDEWFQS  82
            DPLT+K + VSV  NKN  +SQK+AQ  LN  IE +L++ +   L +LTFH ACDEW++ 
Sbjct  22   DPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYSTKQLENLTFHDACDEWLEH  81

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDNKGYVYQVNKDA  142
            Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +Y Q++++E  +   + +V+   
Sbjct  82   YKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQNIINEWAKSHSIGHVQ-SL  140

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINT  202
            + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E +AKRN+YLE +E++ ++  ++ 
Sbjct  141  VIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQAKRNNYLEDSEVKELLECFDY  200

Query  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262
              +  + + +KR Y  V  + EFQ  NGMRIGE+LAI+ +++D +NK+L+I+GTI+W  D
Sbjct  201  LIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKTLEIDGTINWVTD  260

Query  263  E-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKG  321
              +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LENKK+++WND +++R ++FTN  G
Sbjct  261  VVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKENQWNDKFIDRGYIFTNTAG  320

Query  322  NPMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHRTT  381
            +P++ ++ N+I++EA+   +I+K V++H LRH+HIS L+Q G++LKAI +RVGHSD +TT
Sbjct  321  SPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTT  380

Query  382  LSIYSHVTEQMDKDMMNKLEQV  403
            L IY+HVT++M KDMMNKLE +
Sbjct  381  LEIYTHVTDKMAKDMMNKLEGI  402

17) SA957_0769 in NC_022442


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  255 bits (954),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 178/382 (47%), Positives = 282/382 (74%), Gaps = 2/382 (0%)

Query  23   DPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHVACDEWFQS  82
            DPLT+K + VSV  NKN  +SQK+AQ  LN  IE +L++ +   L +LTFH ACDEW++ 
Sbjct  22   DPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYSTKQLENLTFHDACDEWLEH  81

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDNKGYVYQVNKDA  142
            Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +Y Q++++E  +   + +V+   
Sbjct  82   YKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQNIINEWAKSHSIGHVQ-SL  140

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINT  202
            + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E +AKRN+YLE +E++ ++  ++ 
Sbjct  141  VIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQAKRNNYLEDSEVKELLECFDY  200

Query  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262
              +  + + +KR Y  V  + EFQ  NGMRIGE+LAI+ +++D +NK+L+I+GTI+W  D
Sbjct  201  LIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKTLEIDGTINWVTD  260

Query  263  E-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKG  321
              +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LENKK+++WND +++R ++FTN  G
Sbjct  261  VVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKENQWNDKFIDRGYIFTNTAG  320

Query  322  NPMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHRTT  381
            +P++ ++ N+I++EA+   +I+K V++H LRH+HIS L+Q G++LKAI +RVGHSD +TT
Sbjct  321  SPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTT  380

Query  382  LSIYSHVTEQMDKDMMNKLEQV  403
            L IY+HVT++M KDMMNKLE +
Sbjct  381  LEIYTHVTDKMAKDMMNKLEGI  402

18) int in NC_007793


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  255 bits (954),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 178/382 (47%), Positives = 281/382 (74%), Gaps = 2/382 (0%)

Query  23   DPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEEKLNDKKPTTLKSLTFHVACDEWFQN  82
            DPLT+K + VSV  NKN  +SQK+AQ  LN  IE++L++     L +LTFH ACDEW+++
Sbjct  22   DPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYSTKQLENLTFHDACDEWLEH  81

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDA  142
            Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +Y Q++++E      + +V+   
Sbjct  82   YKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQNIINEWAKSHSIGHVQ-SL  140

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIESIIKDINT  202
            + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E +AKRN+YLE +E+  ++  ++ 
Sbjct  141  VIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQAKRNNYLEDSEVKELLECFDY  200

Query  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262
              +  + + +KR Y  V  + EFQ  NGMRIGE+LAI+ +++D +NK+L+I+GTI+W  D
Sbjct  201  LIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKTLEIDGTINWVTD  260

Query  263  E-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKG  321
              +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LENKK+++WND +++R ++FTN  G
Sbjct  261  VVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKENQWNDKFIDRGYIFTNTAG  320

Query  322  NPMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHRTT  381
            +P++ ++ N+I++EA+   +I+K V++H LRH+HIS L+Q G++LKAI +RVGHSD +TT
Sbjct  321  SPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTT  380

Query  382  LSIYSHVTEQMDKDMMNKLEQV  403
            L IY+HVT++M KDMMNKLE +
Sbjct  381  LEIYTHVTDKMAKDMMNKLEGI  402

19) USA300HOU_0850 in NC_010079


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  255 bits (954),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 178/382 (47%), Positives = 281/382 (74%), Gaps = 2/382 (0%)

Query  23   DPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEEKLNDKKPTTLKSLTFHVACDEWFQN  82
            DPLT+K + VSV  NKN  +SQK+AQ  LN  IE++L++     L +LTFH ACDEW+++
Sbjct  22   DPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYSTKQLENLTFHDACDEWLEH  81

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDA  142
            Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +Y Q++++E      + +V+   
Sbjct  82   YKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQNIINEWAKSHSIGHVQ-SL  140

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIESIIKDINT  202
            + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E +AKRN+YLE +E+  ++  ++ 
Sbjct  141  VIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQAKRNNYLEDSEVKELLECFDY  200

Query  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262
              +  + + +KR Y  V  + EFQ  NGMRIGE+LAI+ +++D +NK+L+I+GTI+W  D
Sbjct  201  LIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKTLEIDGTINWVTD  260

Query  263  E-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKG  321
              +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LENKK+++WND +++R ++FTN  G
Sbjct  261  VVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKENQWNDKFIDRGYIFTNTAG  320

Query  322  NPMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHRTT  381
            +P++ ++ N+I++EA+   +I+K V++H LRH+HIS L+Q G++LKAI +RVGHSD +TT
Sbjct  321  SPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTT  380

Query  382  LSIYSHVTEQMDKDMMNKLEQV  403
            L IY+HVT++M KDMMNKLE +
Sbjct  381  LEIYTHVTDKMAKDMMNKLEGI  402

20) int in NC_017341


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  252 bits (942),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 177/382 (47%), Positives = 280/382 (74%), Gaps = 2/382 (0%)

Query  23   DPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQN  82
            DPLT K + VSV  NKN  +SQK+AQ  LN  IE +L++ +   L +LTFH A DEW+++
Sbjct  22   DPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYSTKQLENLTFHDACDEWLEH  81

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDA  142
            Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +Y Q++++E      + +V+   
Sbjct  82   YKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQNIINEWAKSHSIGHVQ-SL  140

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINM  202
            + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E +AKRN+YLE +E++ ++  ++ 
Sbjct  141  VIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQAKRNNYLEDSEVKELLECFDY  200

Query  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262
              +  + + +KR Y  V  + EFQ  NGMRIGE+LAI+ +++D +NK+L+I+GTI+W  D
Sbjct  201  LIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKTLEIDGTINWVTD  260

Query  263  E-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKG  321
              +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LENKK+++WND +++R ++FTN  G
Sbjct  261  VVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKENQWNDKFIDRGYIFTNTAG  320

Query  322  NPMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHRTT  381
            +P++ ++ N+I++EA+   +I+K V++H LRH+HIS L+Q G++LKAI +RVGHSD +TT
Sbjct  321  SPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTT  380

Query  382  LSIYSHVTEQMDKDMMNKLEQV  403
            L IY+HVT++M KDMMNKLE +
Sbjct  381  LEIYTHVTDKMAKDMMNKLEGI  402

21) rbsU in NC_017347


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  252 bits (942),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 177/382 (47%), Positives = 280/382 (74%), Gaps = 2/382 (0%)

Query  23   DPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQN  82
            DPLT K + VSV  NKN  +SQK+AQ  LN  IE +L++ +   L +LTFH A DEW+++
Sbjct  22   DPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYSTKQLENLTFHDACDEWLEH  81

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDA  142
            Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +Y Q++++E      + +V+   
Sbjct  82   YKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQNIINEWAKSHSIGHVQ-SL  140

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINM  202
            + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E +AKRN+YLE +E++ ++  ++ 
Sbjct  141  VIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQAKRNNYLEDSEVKELLECFDY  200

Query  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262
              +  + + +KR Y  V  + EFQ  NGMRIGE+LAI+ +++D +NK+L+I+GTI+W  D
Sbjct  201  LIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKTLEIDGTINWVTD  260

Query  263  E-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKG  321
              +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LENKK+++WND +++R ++FTN  G
Sbjct  261  VVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKENQWNDKFIDRGYIFTNTAG  320

Query  322  NPMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHRTT  381
            +P++ ++ N+I++EA+   +I+K V++H LRH+HIS L+Q G++LKAI +RVGHSD +TT
Sbjct  321  SPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTT  380

Query  382  LSIYSHVTEQMDKDMMNKLEQV  403
            L IY+HVT++M KDMMNKLE +
Sbjct  381  LEIYTHVTDKMAKDMMNKLEGI  402

22) SATW20_08890 in NC_017331


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  252 bits (942),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 177/382 (47%), Positives = 280/382 (74%), Gaps = 2/382 (0%)

Query  23   DPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQN  82
            DPLT K + VSV  NKN  +SQK+AQ  LN  IE +L++ +   L +LTFH A DEW+++
Sbjct  22   DPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYSTKQLENLTFHDACDEWLEH  81

Query  83   YIKTSGSKRttiktklsklntlkkFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDA  142
            Y   SGSK TTIK K S+ NT+K+ +D  +LI+KIT +Y Q++++E      + +V+   
Sbjct  82   YKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQNIINEWAKSHSIGHVQ-SL  140

Query  143  LSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINM  202
            + ++++VF Y+ + Y L+D+  L  I + K+ ++ +E +AKRN+YLE +E++ ++  ++ 
Sbjct  141  VIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQAKRNNYLEDSEVKELLECFDY  200

Query  203  KAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHD  262
              +  + + +KR Y  V  + EFQ  NGMRIGE+LAI+ +++D +NK+L+I+GTI+W  D
Sbjct  201  LIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNVDVENKTLEIDGTINWVTD  260

Query  263  E-SGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKG  321
              +G+FGVK+TTKT  SYRTIGL+++S ++LKK +LENKK+++WND +++R ++FTN  G
Sbjct  261  VVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKENQWNDKFIDRGYIFTNTAG  320

Query  322  NPMQTERFNKILREAAKDVGIDKEVsshilrhshisllsQQGVSLKAIMDRVGHSDHRTT  381
            +P++ ++ N+I++EA+   +I+K V++H LRH+HIS L+Q G++LKAI +RVGHSD +TT
Sbjct  321  SPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTT  380

Query  382  LSIYSHVTEQMDKDMMNKLEQV  403
            L IY+HVT++M KDMMNKLE +
Sbjct  381  LEIYTHVTDKMAKDMMNKLEGI  402

23) SAPIG0334 in NC_017333


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  251 bits (937),  Expect = 7e-68, Method: Compositional matrix adjust.
 Identities = 168/404 (42%), Positives = 276/404 (69%), Gaps = 11/404 (2%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEDKIKEKLN  60
            MW   + ++N+ T YRY E+Y DP T+K K VSV  NKN  +SQK+A + L+  I ++L+
Sbjct  1    MWVREITKNNS-TAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   NQSSSILKTLTFHTLLDEWFEYHTKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            + S+  L  LTFH   DEW+E     SG K TT+ + K+  + +K+    ++L++KI   
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YMQTFINELSNIYSENQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            Y+Q +INE ++  S  +V+  +  ++  +KYA K+Y+  +  +L+ + +PKK++T ++++
Sbjct  120  YLQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQ  179

Query  181  KEEAKMYNYLEMEQVIQIR---DFILNDNNMQYRARI--LVAGAVEVQALTGMRIGELLA  235
               AK  NYLE  +V ++    D++++++    R R   +V + VE Q   GMRIGELLA
Sbjct  180  ---AKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLA  236

Query  236  LQVKDVDLKNKTIDINGTIHRIK--CNAGFGHKDTTKTAGSRRKIAINSRIANVLKKIML  293
            ++  +VD+ NKT++I+GTI+++     ++FG K+TTKT+ S R I++ ++  N+LKK+ML
Sbjct  237  IKTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLML  296

Query  294  ENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHIS  353
            ENKK +QW+  ++DRG+IFT   G+P++ +++N+ +  A++  +INK+VTTHTLRHTHIS
Sbjct  297  ENKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHIS  356

Query  354  LLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLE  397
             LA++ I+LKAI  RVGH+D KTT+ +YTHVT+KM +++ +KLE
Sbjct  357  TLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLE  400

24) C248_0310 in NC_018608


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  244 bits (912),  Expect = 7e-66, Method: Compositional matrix adjust.
 Identities = 171/404 (43%), Positives = 277/404 (69%), Gaps = 11/404 (2%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW+  +  KNN T YRY E+Y DP T+K K VSV  NKN  +SQK+A + L+  I ++L+
Sbjct  1    MWVREI-TKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            + S+ +L  LTFH   DEWLE     SG K TT+ + K+  + +K+    ++L++KI   
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            Y+Q +INE ++  S  +V+  +  ++  +KYA K+Y+  +  +L+ + +PKK++T ++++
Sbjct  120  YLQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQ  179

Query  181  KEEAKMYNYLEMEQVIQIR---DFILNDNNMQYRARI--LVAGAVEVQALTGMRIGELLA  235
               AK  NYLE  +V ++    D++++++    R R   +V + VE Q   GMRIGELLA
Sbjct  180  ---AKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLA  236

Query  236  LQVKDVDLKNKTIDINGTIHRIK--CNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIML  293
            ++  +VD+ NKT++I+GTI+++     ++FG K+TTKT+ S R I++ ++  N+LKK+ML
Sbjct  237  IKTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLML  296

Query  294  ENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHIS  353
            ENKK +QW+  ++DRG+IFT   G+P++ +++N+ +  A++  +INK+VTTHTLRHTHIS
Sbjct  297  ENKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHIS  356

Query  354  LLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLE  397
             LA++ I+LKAI  RVGH+D KTT+ +YTHVT+KM +++ +KLE
Sbjct  357  TLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLE  400

25) int in NC_002951


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  238 bits (888),  Expect = 5e-64, Method: Compositional matrix adjust.
 Identities = 169/404 (42%), Positives = 277/404 (69%), Gaps = 11/404 (2%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW   + ++N+ T YRY E+Y DP T+K K VSV  NKN  +SQK+A + L+  I ++L+
Sbjct  1    MWVREITKNNS-TAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            + S+ +L  LTFH   DEWLE     SG K TT+ + K+  + +K+    ++L++KI   
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            Y+Q +INE ++  S  +V+  +  ++  +KYA K+Y+  +  +L+ + +PKK++T ++++
Sbjct  120  YLQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQ  179

Query  181  KEEAKMYNYLEMEQVIQIR---DFILNDNNMQYRARI--LVAGAVEVQALTGMRIGELLA  235
               AK  NYLE  +V ++    D++++++    R R   +V + VE Q   GMRIGELLA
Sbjct  180  ---AKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLA  236

Query  236  LQVKDVDLKNKTIDINGTIHRIK--CNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIML  293
            ++  +VD+ NKT++I+GTI+++     ++FG K+TTKT+ S R I++ ++  N+LKK+ML
Sbjct  237  IKTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLML  296

Query  294  ENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHIS  353
            ENKK +QW+  ++DRG+IFT   G+P++ +++N+ +  A++  +INK+VTTHTLRHTHIS
Sbjct  297  ENKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHIS  356

Query  354  LLAEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELEQKLE  397
             LA++ I+LKAI  RVGH+D KTT+ +YTHVT+KM +++ +KLE
Sbjct  357  TLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLE  400

26) SaurJH1_0311 in NC_009632


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/404 (42%), Positives = 275/404 (69%), Gaps = 11/404 (2%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW   + ++N+ T YRY E+Y DP T+K K VSV  NKN  +SQK+A + L+  I ++L+
Sbjct  1    MWVREITKNNS-TAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            + S+ +L  LTFH   DEWLE     SG K TT+ + K+  + +K+    ++L++KI   
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            Y+Q +INE ++  S  +V+  +  ++  +KYA K+Y+  +  +L+ + +PKK++T ++++
Sbjct  120  YLQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQ  179

Query  181  KEEAKMYNYLEMEQVIQIR---DFILNDNNMQYRARI--LVAGAVEVQALTGMRIGELLA  235
               AK  NYLE  +V ++    D++++++    R R   +V + VE Q   GMRIGELLA
Sbjct  180  ---AKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLA  236

Query  236  LQVKDVDLKNKTIAINGTIHRIK--CNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIML  293
            ++  +VD+ NKT+ I+GTI+++     ++FG K+TTKT+ S R I++ ++  N+LKK+ML
Sbjct  237  IKTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLML  296

Query  294  ENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHIS  353
            ENKK +QW+  ++DRG+IFT   G+P++ +++N+ +  A++  +INK+VTTHTLRHTHIS
Sbjct  297  ENKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHIS  356

Query  354  LLAEMNISLKAIMKRVGHRDEKTTIKVYTHVTEKMDRELEQKLE  397
             LA++ I+LKAI  RVGH D KTT+ +YTHVT+KM +++ +KLE
Sbjct  357  TLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLE  400

27) SaurJH9_0304 in NC_009487


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/404 (42%), Positives = 275/404 (69%), Gaps = 11/404 (2%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW   + ++N+ T YRY E+Y DP T+K K VSV  NKN  +SQK+A + L+  I ++L+
Sbjct  1    MWVREITKNNS-TAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            + S+ +L  LTFH   DEWLE     SG K TT+ + K+  + +K+    ++L++KI   
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            Y+Q +INE ++  S  +V+  +  ++  +KYA K+Y+  +  +L+ + +PKK++T ++++
Sbjct  120  YLQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQ  179

Query  181  KEEAKMYNYLEMEQVIQIR---DFILNDNNMQYRARI--LVAGAVEVQALTGMRIGELLA  235
               AK  NYLE  +V ++    D++++++    R R   +V + VE Q   GMRIGELLA
Sbjct  180  ---AKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLA  236

Query  236  LQVKDVDLKNKTIAINGTIHRIK--CNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIML  293
            ++  +VD+ NKT+ I+GTI+++     ++FG K+TTKT+ S R I++ ++  N+LKK+ML
Sbjct  237  IKTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLML  296

Query  294  ENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHIS  353
            ENKK +QW+  ++DRG+IFT   G+P++ +++N+ +  A++  +INK+VTTHTLRHTHIS
Sbjct  297  ENKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHIS  356

Query  354  LLAEMNISLKAIMKRVGHRDEKTTIKVYTHVTEKMDRELEQKLE  397
             LA++ I+LKAI  RVGH D KTT+ +YTHVT+KM +++ +KLE
Sbjct  357  TLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLE  400

28) int in NC_009641


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/404 (42%), Positives = 275/404 (69%), Gaps = 11/404 (2%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW   + ++N+ T YRY E+Y DP T+K K VSV  NKN  +SQK+A + L+  I ++L+
Sbjct  1    MWVREITKNNS-TAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            + S+ +L  LTFH   DEWLE     SG K TT+ + K+  + +K+    ++L++KI   
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            Y+Q +INE ++  S  +V+  +  ++  +KYA K+Y+  +  +L+ + +PKK++T ++++
Sbjct  120  YLQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQ  179

Query  181  KEEAKMYNYLEMEQVIQIR---DFILNDNNMQYRARI--LVAGAVEVQALTGMRIGELLA  235
               AK  NYLE  +V ++    D++++++    R R   +V + VE Q   GMRIGELLA
Sbjct  180  ---AKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLA  236

Query  236  LQVKDVDLKNKTIAINGTIHRIK--CNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIML  293
            ++  +VD+ NKT+ I+GTI+++     ++FG K+TTKT+ S R I++ ++  N+LKK+ML
Sbjct  237  IKTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLML  296

Query  294  ENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHIS  353
            ENKK +QW+  ++DRG+IFT   G+P++ +++N+ +  A++  +INK+VTTHTLRHTHIS
Sbjct  297  ENKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHIS  356

Query  354  LLAEMNISLKAIMKRVGHRDEKTTIKVYTHVTEKMDRELEQKLE  397
             LA++ I+LKAI  RVGH D KTT+ +YTHVT+KM +++ +KLE
Sbjct  357  TLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLE  400

29) SATW20_03260 in NC_017331


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/404 (42%), Positives = 275/404 (69%), Gaps = 11/404 (2%)

Query  1    MWfekfknknneTKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRleekikekln  60
            MW   + ++N+ T YRY E+Y DP T+K K VSV  NKN  +SQK+A + L+  I ++L+
Sbjct  1    MWVREITKNNS-TAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   nkssselkTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTK  120
            + S+ +L  LTFH   DEWLE     SG K TT+ + K+  + +K+    ++L++KI   
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIE  180
            Y+Q +INE ++  S  +V+  +  ++  +KYA K+Y+  +  +L+ + +PKK++T ++++
Sbjct  120  YLQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQ  179

Query  181  KEEAKMYNYLEMEQVIQIR---DFILNDNNMQYRARI--LVAGAVEVQALTGMRIGELLA  235
               AK  NYLE  +V ++    D++++++    R R   +V + VE Q   GMRIGELLA
Sbjct  180  ---AKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLA  236

Query  236  LQVKDVDLKNKTIAINGTIHRIK--CNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIML  293
            ++  +VD+ NKT+ I+GTI+++     ++FG K+TTKT+ S R I++ ++  N+LKK+ML
Sbjct  237  IKTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLML  296

Query  294  ENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHIS  353
            ENKK +QW+  ++DRG+IFT   G+P++ +++N+ +  A++  +INK+VTTHTLRHTHIS
Sbjct  297  ENKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHIS  356

Query  354  LLAEMNISLKAIMKRVGHRDEKTTIKVYTHVTEKMDRELEQKLE  397
             LA++ I+LKAI  RVGH D KTT+ +YTHVT+KM +++ +KLE
Sbjct  357  TLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLE  400

30) SaurJH1_1039 in NC_009632


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  225 bits (839),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 163/406 (41%), Positives = 276/406 (68%), Gaps = 11/406 (2%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKDTKQSQKEAMFRleekikekln  60
            MW+  +  KNN T YRY E+Y DP T+K K VSV  NK+  +SQK+A + L+  I ++L+
Sbjct  1    MWVREI-TKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   nkssselkTLTFHTLLEEWLEYHIKTSGSKVTTLNNIKTRVKNIkknsskdlllnkldTK  120
            + S+ +L  LTFH   +EWLE     SGSK TT+++ K+  + +K+     +L++K+   
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YMQMFINKLSSIYSTNQLRYQLGHMKEAIKYAVKFYDYPNEHLLTGVKLPKKRKTIEDIE  180
            Y+Q +IN  +   S  +++  +  ++  +KYA K+YD  +  +L  + +PKK +T ++++
Sbjct  120  YLQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQ  179

Query  181  KDEAKMYNYLE---LQQVIQIRDFILNYNSLHYRTRI--LIAGALEVQALTGMRIGELLA  235
               AK  NYLE   ++++++  D++++ +    R R   ++ + +E Q   GMRIGELLA
Sbjct  180  ---AKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLA  236

Query  236  LQIKDVDLKNKTIDINGTLHRIK--CNTGFGYKDTTKTTGSKRNITINSRTAKVLKKIML  293
            ++  +VD+ NKT++I+GT++++      +FG K+TTKT+ S R I + +++ ++LKK+ML
Sbjct  237  IKTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLML  296

Query  294  ENKKMKQWKPSYIDRGFLFTTSKGNPLQIDKINKLLSLAAESLNINKKVTTHTLRHTHIS  353
            ENKK +QW+  +IDRG++FT + G+P++++K+N+++  A++  +INK+VTTHTLRHTHIS
Sbjct  297  ENKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHIS  356

Query  354  LLVEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELDRKLEKL  399
             L ++ I+LKAI  RVGH+D KTT+ +YTHVT+KM +++  KLE +
Sbjct  357  TLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGI  402

31) SaurJH9_1020 in NC_009487


> NC_002952_P1|4|G2|49482599|YP_039823.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|1079..2293|-|SAR0366|integrase
Length=404

 Score =  225 bits (839),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 163/406 (41%), Positives = 276/406 (68%), Gaps = 11/406 (2%)

Query  1    MWIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKDTKQSQKEAMFRleekikekln  60
            MW+  +  KNN T YRY E+Y DP T+K K VSV  NK+  +SQK+A + L+  I ++L+
Sbjct  1    MWVREI-TKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLK  59

Query  61   nkssselkTLTFHTLLEEWLEYHIKTSGSKVTTLNNIKTRVKNIkknsskdlllnkldTK  120
            + S+ +L  LTFH   +EWLE     SGSK TT+++ K+  + +K+     +L++K+   
Sbjct  60   HYSTKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHT  119

Query  121  YMQMFINKLSSIYSTNQLRYQLGHMKEAIKYAVKFYDYPNEHLLTGVKLPKKRKTIEDIE  180
            Y+Q +IN  +   S  +++  +  ++  +KYA K+YD  +  +L  + +PKK +T ++++
Sbjct  120  YLQNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQ  179

Query  181  KDEAKMYNYLE---LQQVIQIRDFILNYNSLHYRTRI--LIAGALEVQALTGMRIGELLA  235
               AK  NYLE   ++++++  D++++ +    R R   ++ + +E Q   GMRIGELLA
Sbjct  180  ---AKRNNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLA  236

Query  236  LQIKDVDLKNKTIDINGTLHRIK--CNTGFGYKDTTKTTGSKRNITINSRTAKVLKKIML  293
            ++  +VD+ NKT++I+GT++++      +FG K+TTKT+ S R I + +++ ++LKK+ML
Sbjct  237  IKTDNVDVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLML  296

Query  294  ENKKMKQWKPSYIDRGFLFTTSKGNPLQIDKINKLLSLAAESLNINKKVTTHTLRHTHIS  353
            ENKK +QW+  +IDRG++FT + G+P++++K+N+++  A++  +INK+VTTHTLRHTHIS
Sbjct  297  ENKKENQWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHIS  356

Query  354  LLVEMNISLKAIMKRVGHTDEKTTIKVYTHVTEKMDRELDRKLEKL  399
             L ++ I+LKAI  RVGH+D KTT+ +YTHVT+KM +++  KLE +
Sbjct  357  TLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDKMAKDMMNKLEGI  402