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PAthogenisity Island DataBase (PAI DB)

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Homologs of tnpA gene of AM086403

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) HPELS_00920
( YP_005424337.1 )

IS606 transposase

NC_017063
(Helicobacter pylori ELS37)

0.0

2) HPELS_00940
( YP_005424341.1 )

IS606 transposase

NC_017063
(Helicobacter pylori ELS37)

0.0

3) HPELS_05260
( YP_005425158.1 )

IS606 transposase

NC_017063
(Helicobacter pylori ELS37)

0.0

4) HPELS_07270
( YP_005425545.1 )

IS606 transposase

NC_017063
(Helicobacter pylori ELS37)

0.0

5) join
( YP_005425737.1 )

IS606 transposase

NC_017064
(Helicobacter pylori ELS37)

0.0

6) tnpB
( NP_223544.1 )

IS606 transposase

NC_000921
(Helicobacter pylori J99)

0.0

7) HPELS_08105
( YP_005425702.1 )

IS606 transposase

NC_017063
(Helicobacter pylori ELS37)

2e-177

8) HPSA_02765
( YP_005771167.1 )

IS606 transposase

NC_017361
(Helicobacter pylori SouthAfrica7)

1e-173

9) HPSA_07580
( YP_005772070.1 )

IS606 transposase

NC_017361
(Helicobacter pylori SouthAfrica7)

1e-173

10) HPSA_08259
( YP_005782948.1 )

IS606 transposase

NC_017373
(Helicobacter pylori SouthAfrica7)

1e-173

11) HPSA_08289
( YP_005782954.1 )

IS606 transposase

NC_017373
(Helicobacter pylori SouthAfrica7)

1e-173

12) HPSA_08344
( YP_005782965.1 )

IS606 transposase

NC_017373
(Helicobacter pylori SouthAfrica7)

1e-173

13) HCD_01195
( YP_006220481.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

6e-158

14) HCD_05110
( YP_006221234.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

6e-158

15) HCD_07850
( YP_006221767.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

6e-158

16) HCD_08095
( YP_006221813.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

6e-158

17) HCD_08330
( YP_006221858.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

6e-158

18) HPPC_04955
( YP_003927257.1 )

IS606 transposase

NC_014555
(Helicobacter pylori PeCan4)

3e-156

19) HPAKL117_04690
( YP_007017472.1 )

IS606 transposase

NC_019560
(Helicobacter pylori Aklavik117)

4e-156

20) HCD_01015
( YP_006220445.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

2e-152

21) HCD_01955
( YP_006220625.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

2e-152

22) HCD_02215
( YP_006220677.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

2e-152

23) HCD_02410
( YP_006220712.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

2e-152

24) HCD_02820
( YP_006220792.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

2e-152

25) HCD_02975
( YP_006220821.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

2e-152

26) HCD_05155
( YP_006221243.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

2e-152

27) HCD_05185
( YP_006221249.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

2e-152

28) HCD_06180
( YP_006221448.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

2e-152

29) HCD_07460
( YP_006221693.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

2e-152

30) HCD_07770
( YP_006221751.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

2e-152

31) HCD_07790
( YP_006221755.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

2e-152

32) HCD_07940
( YP_006221782.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

2e-152

33) HCD_08729
( YP_006221919.1 )

IS606 transposase

NC_017736
(Helicobacter cetorum MIT 99-5656)

2e-152

34) HCD_08764
( YP_006221925.1 )

IS606 transposase

NC_017736
(Helicobacter cetorum MIT 99-5656)

2e-152

35) tnpB2a
( YP_005784500.1 )

IS606 Transposase

NC_017374
(Helicobacter pylori 2017)

1e-142

36) tnpB1
( YP_005792345.1 )

IS606 transposase

NC_017381
(Helicobacter pylori 2018)

4e-133

37) hp908_1540
( YP_005766034.1 )

IS606 transposase

NC_017357
(Helicobacter pylori 908)

5e-131

• Sequence Alignments

1) HPELS_00920 in NC_017063


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  647 bits (2447),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/442 (96%), Positives = 432/442 (98%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKRSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKD PPKERKWK+SS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFLWN  120
            ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVK+RGFPKFKNSKSAKQSF WN
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKESDEERFKTFTLMKMPLLMRMHRDFPPNFKVKQISISCSHRKYFVSFSVEYEQ  180
            NQGFSIK+SDEERFK FTLMKMPL+MRMHRDFPP+ KVKQI ISCSHRKYFVSFSVEYEQ
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITPIKNPKDCVGLDLNILDIACSCGINNHEKLTDFKQYQTDMKELLGIEIDKELDTKRL  240
            DITPIKNPK+ VGLDLNILDIACSCG+NNH KLTDFKQY TDMKELLGIEID ELDTKRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  241  IPTysklyslkkyskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300
            IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSINNTSFYQIISFLD  360
            TDRYHKIT+ELS+QFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSI NTSFYQIISFLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

2) HPELS_00940 in NC_017063


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  647 bits (2447),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/442 (96%), Positives = 432/442 (98%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKRSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKD PPKERKWK+SS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFLWN  120
            ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVK+RGFPKFKNSKSAKQSF WN
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKESDEERFKTFTLMKMPLLMRMHRDFPPNFKVKQISISCSHRKYFVSFSVEYEQ  180
            NQGFSIK+SDEERFK FTLMKMPL+MRMHRDFPP+ KVKQI ISCSHRKYFVSFSVEYEQ
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITPIKNPKDCVGLDLNILDIACSCGINNHEKLTDFKQYQTDMKELLGIEIDKELDTKRL  240
            DITPIKNPK+ VGLDLNILDIACSCG+NNH KLTDFKQY TDMKELLGIEID ELDTKRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  241  IPTysklyslkkyskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300
            IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSINNTSFYQIISFLD  360
            TDRYHKIT+ELS+QFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSI NTSFYQIISFLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

3) HPELS_05260 in NC_017063


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  647 bits (2447),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/442 (96%), Positives = 432/442 (98%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKRSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKD PPKERKWK+SS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFLWN  120
            ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVK+RGFPKFKNSKSAKQSF WN
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKESDEERFKTFTLMKMPLLMRMHRDFPPNFKVKQISISCSHRKYFVSFSVEYEQ  180
            NQGFSIK+SDEERFK FTLMKMPL+MRMHRDFPP+ KVKQI ISCSHRKYFVSFSVEYEQ
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITPIKNPKDCVGLDLNILDIACSCGINNHEKLTDFKQYQTDMKELLGIEIDKELDTKRL  240
            DITPIKNPK+ VGLDLNILDIACSCG+NNH KLTDFKQY TDMKELLGIEID ELDTKRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  241  IPTysklyslkkyskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300
            IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSINNTSFYQIISFLD  360
            TDRYHKIT+ELS+QFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSI NTSFYQIISFLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

4) HPELS_07270 in NC_017063


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  647 bits (2447),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/442 (96%), Positives = 432/442 (98%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKRSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKD PPKERKWK+SS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFLWN  120
            ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVK+RGFPKFKNSKSAKQSF WN
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKESDEERFKTFTLMKMPLLMRMHRDFPPNFKVKQISISCSHRKYFVSFSVEYEQ  180
            NQGFSIK+SDEERFK FTLMKMPL+MRMHRDFPP+ KVKQI ISCSHRKYFVSFSVEYEQ
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITPIKNPKDCVGLDLNILDIACSCGINNHEKLTDFKQYQTDMKELLGIEIDKELDTKRL  240
            DITPIKNPK+ VGLDLNILDIACSCG+NNH KLTDFKQY TDMKELLGIEID ELDTKRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  241  IPTysklyslkkyskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300
            IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSINNTSFYQIISFLD  360
            TDRYHKIT+ELS+QFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSI NTSFYQIISFLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

5) join in NC_017064


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  647 bits (2447),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/442 (96%), Positives = 432/442 (98%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKRSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKD PPKERKWK+SS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFLWN  120
            ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVK+RGFPKFKNSKSAKQSF WN
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKESDEERFKTFTLMKMPLLMRMHRDFPPNFKVKQISISCSHRKYFVSFSVEYEQ  180
            NQGFSIK+SDEERFK FTLMKMPL+MRMHRDFPP+ KVKQI ISCSHRKYFVSFSVEYEQ
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITPIKNPKDCVGLDLNILDIACSCGINNHEKLTDFKQYQTDMKELLGIEIDKELDTKRL  240
            DITPIKNPK+ VGLDLNILDIACSCG+NNH KLTDFKQY TDMKELLGIEID ELDTKRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  241  IPTysklyslkkyskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300
            IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSINNTSFYQIISFLD  360
            TDRYHKIT+ELS+QFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSI NTSFYQIISFLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

6) tnpB in NC_000921


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  635 bits (2399),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 428/442 (97%), Positives = 435/442 (99%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYEKNKDLPPKERTRKKSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYE NKD PPKER +KKSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWN  120
            ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVK+RGFPKFKNSKSAKQSFSWN
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFFIKESDEERFKIFTLMKMPLMMCMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180
            NQGF IK+SDEERFKIFTLMKMPLMM MHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKRYSTDMKellgieideeldTKRL  240
            DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFK+Y+TDMKELLGIEIDEELDTKRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  241  IPTYsklyslkkhskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQVFDKSSHQK  300
            IPTYSKLYSLKK SKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQ FDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360
            TDRYHKIT+ELS+QFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

7) HPELS_08105 in NC_017063


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  614 bits (2321),  Expect = 2e-177, Method: Compositional matrix adjust.
 Identities = 402/422 (96%), Positives = 412/422 (98%), Gaps = 0/422 (0%)

Query  1    MQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKRSSELDKAIKHHLNARGLSFSSV  60
            +QHCFFVYNQAYNIGLNLLQEQYETNKD PPKERKWK+SSELDKAIKHHLNARGLSFSSV
Sbjct  21   LQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHLNARGLSFSSV  80

Query  61   IAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFLWNNQGFSIKESDEERFKTFTLM  120
            IAQQSRMNVERALKDAFKVK+RGFPKFKNSKSAKQSF WNNQGFSIK+SDEERFK FTLM
Sbjct  81   IAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSDEERFKIFTLM  140

Query  121  KMPLLMRMHRDFPPNFKVKQISISCSHRKYFVSFSVEYEQDITPIKNPKDCVGLDLNILD  180
            KMPL+MRMHRDFPP+ KVKQI ISCSHRKYFVSFSVEYEQDITPIKNPK+ VGLDLNILD
Sbjct  141  KMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKNGVGLDLNILD  200

Query  181  IACSCGINNHEKLTDFKQYQTDMKELLGIEIDKELDTKRLIPTysklyslkkyskkfkrl  240
            IACSCG+NNH KLTDFKQY TDMKELLGIEID ELDTKRLIPTYSKLYSLKKYSKKFKRL
Sbjct  201  IACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSLKKYSKKFKRL  260

Query  241  qrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSELSKQFELIVV  300
            QRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKIT+ELS+QFELIVV
Sbjct  261  QRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNELSRQFELIVV  320

Query  301  EDLQVKNMTKRAKLKNVKQKSGLNQSINNTSFYQIISFLDYKQQHNGKLLVKVPPQYTSK  360
            EDLQVKNMTKRAKLKNVKQKSGLNQSI NTSFYQIISFLDYKQQHNGKLLVKVPPQYTSK
Sbjct  321  EDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLLVKVPPQYTSK  380

Query  361  TCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGNIHADFKEQSL  420
            TCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGNIHADFKEQSL
Sbjct  381  TCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGNIHADFKEQSL  440

Query  421  SC  422
            SC
Sbjct  441  SC  442

8) HPSA_02765 in NC_017361


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  602 bits (2274),  Expect = 1e-173, Method: Compositional matrix adjust.
 Identities = 382/442 (87%), Positives = 412/442 (94%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKNLPPKERKYKKSS  60
            MKVNKGFKFRLYPTKEQQDKLQH FFVYNQAYNIGLNL QEQYE NK+ PPKERK KKSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDNAIKQCLRARDLPFSAVIAQQSRMNVERAFKDALKIKDRGFPKFKNSKFAKQSFSWS  120
            ELD+AIK+ L AR+L+FS+VIAQQSRMNVERA+KDA+K+KDRGFPKFKNSK AKQSFSW+
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKESDDERFKVFTLMKMPLMMRMHRDFPPNAKIKQITISCRHRKYFVSFSVEYKQ  180
            NQGFSIK+SD+ERFK+FTLMKMPLMMRMHRDFPP++K+KQI ISC HRKYFVSFSVEY Q
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITAIKNPKDCVGLDLNVLDIACSCGVNNPEKLTDFKRYIQDMKELLGLEIDEKTDPKRL  240
            DIT+IKNPK+ VGLDLN+LDIACSCGVNN  KLTDFK+Y  DMKELLG+EIDE  D KRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  241  IPTCsklyslkkysEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFERSSHQK  300
            IPT SKLYSLKKYS KFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAF++SSHQK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFEWIAVEDLQVKNMIKRAKLKNAKQKSGLNKSILNASFYQIIFFLD  360
            TDRYHKIT+ELS+QFE I VEDLQVKNM KRAKLKN KQKSGLN+SILN+SFYQII FLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHRQYWCSDCGYKEHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTC  CG+IN KLKLNHRQYWC +CGY+EHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

9) HPSA_07580 in NC_017361


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  602 bits (2274),  Expect = 1e-173, Method: Compositional matrix adjust.
 Identities = 382/442 (87%), Positives = 412/442 (94%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKNLPPKERKYKKSS  60
            MKVNKGFKFRLYPTKEQQDKLQH FFVYNQAYNIGLNL QEQYE NK+ PPKERK KKSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDNAIKQCLRARDLPFSAVIAQQSRMNVERAFKDALKIKDRGFPKFKNSKFAKQSFSWS  120
            ELD+AIK+ L AR+L+FS+VIAQQSRMNVERA+KDA+K+KDRGFPKFKNSK AKQSFSW+
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKESDDERFKVFTLMKMPLMMRMHRDFPPNAKIKQITISCRHRKYFVSFSVEYKQ  180
            NQGFSIK+SD+ERFK+FTLMKMPLMMRMHRDFPP++K+KQI ISC HRKYFVSFSVEY Q
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITAIKNPKDCVGLDLNVLDIACSCGVNNPEKLTDFKRYIQDMKELLGLEIDEKTDPKRL  240
            DIT+IKNPK+ VGLDLN+LDIACSCGVNN  KLTDFK+Y  DMKELLG+EIDE  D KRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  241  IPTCsklyslkkysEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFERSSHQK  300
            IPT SKLYSLKKYS KFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAF++SSHQK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFEWIAVEDLQVKNMIKRAKLKNAKQKSGLNKSILNASFYQIIFFLD  360
            TDRYHKIT+ELS+QFE I VEDLQVKNM KRAKLKN KQKSGLN+SILN+SFYQII FLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHRQYWCSDCGYKEHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTC  CG+IN KLKLNHRQYWC +CGY+EHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

10) HPSA_08259 in NC_017373


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  602 bits (2274),  Expect = 1e-173, Method: Compositional matrix adjust.
 Identities = 382/442 (87%), Positives = 412/442 (94%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKNLPPKERKYKKSS  60
            MKVNKGFKFRLYPTKEQQDKLQH FFVYNQAYNIGLNL QEQYE NK+ PPKERK KKSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDNAIKQCLRARDLPFSAVIAQQSRMNVERAFKDALKIKDRGFPKFKNSKFAKQSFSWS  120
            ELD+AIK+ L AR+L+FS+VIAQQSRMNVERA+KDA+K+KDRGFPKFKNSK AKQSFSW+
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKESDDERFKVFTLMKMPLMMRMHRDFPPNAKIKQITISCRHRKYFVSFSVEYKQ  180
            NQGFSIK+SD+ERFK+FTLMKMPLMMRMHRDFPP++K+KQI ISC HRKYFVSFSVEY Q
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITAIKNPKDCVGLDLNVLDIACSCGVNNPEKLTDFKRYIQDMKELLGLEIDEKTDPKRL  240
            DIT+IKNPK+ VGLDLN+LDIACSCGVNN  KLTDFK+Y  DMKELLG+EIDE  D KRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  241  IPTCsklyslkkysEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFERSSHQK  300
            IPT SKLYSLKKYS KFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAF++SSHQK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFEWIAVEDLQVKNMIKRAKLKNAKQKSGLNKSILNASFYQIIFFLD  360
            TDRYHKIT+ELS+QFE I VEDLQVKNM KRAKLKN KQKSGLN+SILN+SFYQII FLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHRQYWCSDCGYKEHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTC  CG+IN KLKLNHRQYWC +CGY+EHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

11) HPSA_08289 in NC_017373


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  602 bits (2274),  Expect = 1e-173, Method: Compositional matrix adjust.
 Identities = 382/442 (87%), Positives = 412/442 (94%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKNLPPKERKYKKSS  60
            MKVNKGFKFRLYPTKEQQDKLQH FFVYNQAYNIGLNL QEQYE NK+ PPKERK KKSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDNAIKQCLRARDLPFSAVIAQQSRMNVERAFKDALKIKDRGFPKFKNSKFAKQSFSWS  120
            ELD+AIK+ L AR+L+FS+VIAQQSRMNVERA+KDA+K+KDRGFPKFKNSK AKQSFSW+
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKESDDERFKVFTLMKMPLMMRMHRDFPPNAKIKQITISCRHRKYFVSFSVEYKQ  180
            NQGFSIK+SD+ERFK+FTLMKMPLMMRMHRDFPP++K+KQI ISC HRKYFVSFSVEY Q
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITAIKNPKDCVGLDLNVLDIACSCGVNNPEKLTDFKRYIQDMKELLGLEIDEKTDPKRL  240
            DIT+IKNPK+ VGLDLN+LDIACSCGVNN  KLTDFK+Y  DMKELLG+EIDE  D KRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  241  IPTCsklyslkkysEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFERSSHQK  300
            IPT SKLYSLKKYS KFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAF++SSHQK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFEWIAVEDLQVKNMIKRAKLKNAKQKSGLNKSILNASFYQIIFFLD  360
            TDRYHKIT+ELS+QFE I VEDLQVKNM KRAKLKN KQKSGLN+SILN+SFYQII FLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHRQYWCSDCGYKEHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTC  CG+IN KLKLNHRQYWC +CGY+EHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

12) HPSA_08344 in NC_017373


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  602 bits (2274),  Expect = 1e-173, Method: Compositional matrix adjust.
 Identities = 382/442 (87%), Positives = 412/442 (94%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKNLPPKERKYKKSS  60
            MKVNKGFKFRLYPTKEQQDKLQH FFVYNQAYNIGLNL QEQYE NK+ PPKERK KKSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDNAIKQCLRARDLPFSAVIAQQSRMNVERAFKDALKIKDRGFPKFKNSKFAKQSFSWS  120
            ELD+AIK+ L AR+L+FS+VIAQQSRMNVERA+KDA+K+KDRGFPKFKNSK AKQSFSW+
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKESDDERFKVFTLMKMPLMMRMHRDFPPNAKIKQITISCRHRKYFVSFSVEYKQ  180
            NQGFSIK+SD+ERFK+FTLMKMPLMMRMHRDFPP++K+KQI ISC HRKYFVSFSVEY Q
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITAIKNPKDCVGLDLNVLDIACSCGVNNPEKLTDFKRYIQDMKELLGLEIDEKTDPKRL  240
            DIT+IKNPK+ VGLDLN+LDIACSCGVNN  KLTDFK+Y  DMKELLG+EIDE  D KRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  241  IPTCsklyslkkysEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFERSSHQK  300
            IPT SKLYSLKKYS KFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAF++SSHQK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFEWIAVEDLQVKNMIKRAKLKNAKQKSGLNKSILNASFYQIIFFLD  360
            TDRYHKIT+ELS+QFE I VEDLQVKNM KRAKLKN KQKSGLN+SILN+SFYQII FLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHRQYWCSDCGYKEHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTC  CG+IN KLKLNHRQYWC +CGY+EHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

13) HCD_01195 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  550 bits (2075),  Expect = 6e-158, Method: Compositional matrix adjust.
 Identities = 354/442 (81%), Positives = 398/442 (91%), Gaps = 2/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSS  60
            MKVNKGFKFRLYPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDSAIKHHLKARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWN  120
            ELD AIKHHL+AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WN
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKDFNE-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEK  179
            NQGFSIKD +E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  180  ELNTIKEPRNCVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRL  238
            ++  IK+P+N VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  239  IPTYSKLHSFKKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQK  298
            IPTYSKL S+KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  299  LDRYHKITSELSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLD  358
             DRYHKIT+ELS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  359  YKQQHNGKLLVKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIls  418
            YKQQHNGKLLVK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  419  kglsllglgnslADFKEQSLSY  440
            KGLSL+G+GN  ADFKEQSLS 
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

14) HCD_05110 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  550 bits (2075),  Expect = 6e-158, Method: Compositional matrix adjust.
 Identities = 354/442 (81%), Positives = 398/442 (91%), Gaps = 2/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSS  60
            MKVNKGFKFRLYPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDSAIKHHLKARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWN  120
            ELD AIKHHL+AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WN
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKDFNE-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEK  179
            NQGFSIKD +E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  180  ELNTIKEPRNCVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRL  238
            ++  IK+P+N VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  239  IPTYSKLHSFKKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQK  298
            IPTYSKL S+KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  299  LDRYHKITSELSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLD  358
             DRYHKIT+ELS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  359  YKQQHNGKLLVKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIls  418
            YKQQHNGKLLVK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  419  kglsllglgnslADFKEQSLSY  440
            KGLSL+G+GN  ADFKEQSLS 
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

15) HCD_07850 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  550 bits (2075),  Expect = 6e-158, Method: Compositional matrix adjust.
 Identities = 354/442 (81%), Positives = 398/442 (91%), Gaps = 2/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSS  60
            MKVNKGFKFRLYPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDSAIKHHLKARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWN  120
            ELD AIKHHL+AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WN
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKDFNE-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEK  179
            NQGFSIKD +E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  180  ELNTIKEPRNCVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRL  238
            ++  IK+P+N VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  239  IPTYSKLHSFKKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQK  298
            IPTYSKL S+KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  299  LDRYHKITSELSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLD  358
             DRYHKIT+ELS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  359  YKQQHNGKLLVKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIls  418
            YKQQHNGKLLVK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  419  kglsllglgnslADFKEQSLSY  440
            KGLSL+G+GN  ADFKEQSLS 
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

16) HCD_08095 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  550 bits (2075),  Expect = 6e-158, Method: Compositional matrix adjust.
 Identities = 354/442 (81%), Positives = 398/442 (91%), Gaps = 2/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSS  60
            MKVNKGFKFRLYPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDSAIKHHLKARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWN  120
            ELD AIKHHL+AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WN
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKDFNE-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEK  179
            NQGFSIKD +E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  180  ELNTIKEPRNCVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRL  238
            ++  IK+P+N VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  239  IPTYSKLHSFKKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQK  298
            IPTYSKL S+KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  299  LDRYHKITSELSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLD  358
             DRYHKIT+ELS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  359  YKQQHNGKLLVKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIls  418
            YKQQHNGKLLVK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  419  kglsllglgnslADFKEQSLSY  440
            KGLSL+G+GN  ADFKEQSLS 
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

17) HCD_08330 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  550 bits (2075),  Expect = 6e-158, Method: Compositional matrix adjust.
 Identities = 354/442 (81%), Positives = 398/442 (91%), Gaps = 2/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSS  60
            MKVNKGFKFRLYPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDSAIKHHLKARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWN  120
            ELD AIKHHL+AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WN
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKDFNE-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEK  179
            NQGFSIKD +E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  180  ELNTIKEPRNCVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRL  238
            ++  IK+P+N VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRL
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  239  IPTYSKLHSFKKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQK  298
            IPTYSKL S+KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  299  LDRYHKITSELSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLD  358
             DRYHKIT+ELS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLD
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360

Query  359  YKQQHNGKLLVKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIls  418
            YKQQHNGKLLVK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  419  kglsllglgnslADFKEQSLSY  440
            KGLSL+G+GN  ADFKEQSLS 
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

18) HPPC_04955 in NC_014555


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  544 bits (2053),  Expect = 3e-156, Method: Compositional matrix adjust.
 Identities = 362/432 (84%), Positives = 397/432 (92%), Gaps = 0/432 (0%)

Query  1    MYPTKEQESKLQHCFFVYNQAYNIGLNLQQEQYEKNKDLPPKERKWKKSSELDHAIKQCL  60
            +YPTKEQ+ KLQHCFFVYNQAYNIGLNL QEQYE NKD PPKERKWKKSSELD AIK+ L
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   RARDLPFSSVIAKQSRMNVERAFKDAFKVKNRGFPKFKNSKFAKQSFSWNNQGFSFKESA  120
             AR+L+FSSVIA+QSRMNVERA+KDAFKVK+RGFPKFKNSK AKQSFSWNNQGFS+K+S 
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  DERFKIFTLMKMPLLLRMHRDPPPNAKIKQITISCSHRKYFVSFSVEYEQNIATIKNPKD  180
            +ERFKIFTLMKMPL++RMHRD PP++K+KQI ISCSHRKYFVSFSVEYEQ+I+ IKNPK+
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  181  CVGLDLNILDIACSCGVNNPEKLTDFKRYLLDMEELLGIKLDAKTHATQLIPTYsklhsl  240
             VGLDLNILDIACSCGVNN  KLTDFK+Y  DM ELLGI +D   ++ +LIPTYSKL SL
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  241  kkyskkskklqrkqsrrvlkSKQNKTKLGGNFYQTQKRLNQAFDKSSHQKTDRYHKITSE  300
            KKYSKK K+LQRKQSRRVLKSKQNKTKLGGNFY+TQK+LNQAFDKSSHQKTDRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  301  LSKQFELIAVEDLQVKNMTKRAKLKNVKQKSGLNRSILNTSFYQIIFFLDYKQQHNGKLL  360
            LS+QFELI VEDLQVKNMTKRAKLKNVKQKSGLN+SILNTSFYQII FLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  361  VKVPPQYTSKTCYNCGSINPKLKLNHRQYLCSDCGYKEHRDINAANNILNKGLSLFRAGN  420
            VKVPPQYTSKTC  CG+IN KLKLNHRQY C +CGY+EHRDINAANNIL+KGLSLF  GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  421  VLADFKEQSLSC  432
            + ADFKEQSLSC
Sbjct  431  IHADFKEQSLSC  442

19) HPAKL117_04690 in NC_019560


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  544 bits (2052),  Expect = 4e-156, Method: Compositional matrix adjust.
 Identities = 359/432 (84%), Positives = 396/432 (92%), Gaps = 0/432 (0%)

Query  1    MYPTKEQESKLQHCFFVYNQAYNIGLNLQQEQYEKNKDLPQKERKWKKSSELDHAIKQCL  60
            +YPTKEQ+ KLQHCFFVYNQAYNIGLNL QEQYE NKD P KERKWKKSSELD AIK+ L
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   RARDLPFSSVIAQQSRMNVERAFKDAFKVKNRGFPKFKNSKFAKQSFSWNNQGFSLKESA  120
             AR+L+FSSVIAQQSRMNVERA+KDAFKVK+RGFPKFKNSK AKQSFSWNNQGFS+K+S 
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  DERFKIFTLMKMPLLLRMHRDFPPNAKIKQITISCSHRKYFVSFSVEYEQDTTTIKNPKD  180
            +ERFKIFTLMKMPL++RMHRDFPP++K+KQI ISCSHRKYFVSFSVEYEQD T IKNPK+
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  181  CVGIDLNVFDIACSCGVNNPEKLTDFKRYLLDMEELLGIKLDAKTHATQLIPTYsklhsl  240
             VG+DLN++DIACSCGVNN  KLTDFK+Y  DM ELLGI +D   ++ +LIPTYSKL SL
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  241  kkyskkskrlqkkqsrrvlkSKQNKTKLGGNFYQTQKRLNQAFDKSSHQKTDRYHKITSE  300
            KKYSKK KRLQ+KQSRRVLKSKQNKTKLGGNFY+TQK+LNQAFDKSSHQKTDRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  301  LSKQFELIAVEDLQVKNMTKRAKLKNVKQKRGLNKSILNASFYQIISFLDYKQQHNGKLL  360
            LS+QFELI VEDLQVKNMTKRAKLKNVKQK GLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  361  VKVPPQYTSKTCCNCGSINPKLKLNHRQYLCPDCGYKEHRDINAANNILNKGLSLFRAGN  420
            VKVPPQYTSKTC  CG+IN KLKLNHRQY C +CGY+EHRDINAANNIL+KGLSLF  GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  421  VLADYKEQSLSC  432
            + AD+KEQSLSC
Sbjct  431  IHADFKEQSLSC  442

20) HCD_01015 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

21) HCD_01955 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

22) HCD_02215 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

23) HCD_02410 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

24) HCD_02820 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

25) HCD_02975 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

26) HCD_05155 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

27) HCD_05185 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

28) HCD_06180 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

29) HCD_07460 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

30) HCD_07770 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

31) HCD_07790 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

32) HCD_07940 in NC_017735


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

33) HCD_08729 in NC_017736


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

34) HCD_08764 in NC_017736


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 343/432 (80%), Positives = 388/432 (90%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKD P K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSSELDKAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQSRMN ERAL+DAFKVK+RGFPKFKNSK AKQSF+WNNQGFSIKD +
Sbjct  71   NARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWNNQGFSIKDSD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHRD+P ++K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P+N
Sbjct  131  EERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKN  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
             VG+DLNI DIA S ++++  KLTD+ QY  DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  GVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYSK FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKIT+E
Sbjct  251  KKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITNE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LS+QFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILNTSFYQIISFLDYKQQHNGKLL
Sbjct  311  LSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

35) tnpB2a in NC_017374


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  498 bits (1879),  Expect = 1e-142, Method: Compositional matrix adjust.
 Identities = 343/358 (96%), Positives = 352/358 (99%), Gaps = 0/358 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWEKSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKW KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDKAIKHHLNTRGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWN  120
            ELDKAIKHHLN+RGLSFSSVIAQQSRMNVERALKDAFKVK+RGFPKFKNSKSAKQSFSWN
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPHSKVKQIVISCRHRKYFVSFNVEYEQ  180
            NQGFSIK+SDEERFKIFTLMKMPLMMRMHR+FPPHSKVKQIVISC HRKYFVSF+VEYEQ
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DIIPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKRYSTDMKellgieideeldTKLL  240
            DI PIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFK+Y+TDMKELLGIEIDEELDTK L
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  241  IPTYsklyslkkhskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQVFDKSSHQK  300
            IPTYSKLYSLKK SKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQ FDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISF  358
            TDRYHKIT+ELS+QFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISF
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISF  358

36) tnpB1 in NC_017381


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  467 bits (1760),  Expect = 4e-133, Method: Compositional matrix adjust.
 Identities = 321/338 (95%), Positives = 331/338 (98%), Gaps = 0/338 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWEKSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKW KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDKAIKHHLNTRGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWN  120
            ELDKAIKHHLN+RGLSFSSVIAQQSRMNVERALKDAFKVK+RGFPKFKNSKSAKQSFSWN
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPHSKVKQIVISCRHRKYFVSFNVEYEQ  180
            NQGFSIK+SDEERFKIFTLMKMPLMMRMHR+FPPHSKVKQIVISC HRKYFVSF+VEYEQ
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DIIPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKRYSTDMKellgieideeldTKLL  240
            DI PIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFK+Y+TDMKELLGIEIDEELDTK L
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  241  IPTYsklyslkkhskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQVFDKSSHQK  300
            IPTYSKLYSLKK SKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQ FDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKTIK  338
            TDRYHKIT+ELS+QFELIVVEDLQVKNMTKRAKLK +K
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAKLKNVK  338

37) hp908_1540 in NC_017357


> AM086403|4|G3|83682416|CAJ31329.1|Helicobacter_pylori_LSU1062-1|+|1494..2822|tnpA|-|insertion 
sequence IS606 transposase 
homolog A
Length=442

 Score =  460 bits (1732),  Expect = 5e-131, Method: Compositional matrix adjust.
 Identities = 317/333 (96%), Positives = 327/333 (99%), Gaps = 0/333 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWEKSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKW KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWKKSS  60

Query  61   ELDKAIKHHLNTRGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWN  120
            ELDKAIKHHLN+RGLSFSSVIAQQSRMNVERALKDAFKVK+RGFPKFKNSKSAKQSFSWN
Sbjct  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKDRGFPKFKNSKSAKQSFSWN  120

Query  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPHSKVKQIVISCRHRKYFVSFNVEYEQ  180
            NQGFSIK+SDEERFKIFTLMKMPLMMRMHR+FPPHSKVKQIVISC HRKYFVSF+VEYEQ
Sbjct  121  NQGFSIKDSDEERFKIFTLMKMPLMMRMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DIIPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKRYSTDMKellgieideeldTKLL  240
            DI PIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFK+Y+TDMKELLGIEIDEELDTK L
Sbjct  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKQYPTDMKELLGIEIDEELDTKRL  240

Query  241  IPTYsklyslkkhskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQVFDKSSHQK  300
            IPTYSKLYSLKK SKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQ FDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAN  333
            TDRYHKIT+ELS+QFELIVVEDLQVKNMTKRA+
Sbjct  301  TDRYHKITNELSRQFELIVVEDLQVKNMTKRAK  333