Hit (GenBank Accn) |
Product |
Source Genome |
Eval. |
Ident.(%) |
|
putative plasmid transfer protein |
NC_011745 (Escherichia coli ED1a) |
2e-140 |
97 |
|
hypothetical protein |
NC_022371 (Escherichia coli PMV-1) |
3e-129 |
83 |
|
hypothetical protein |
NC_017328 (Shigella flexneri 2002017) |
6e-119 |
99 |
|
hypothetical protein |
NC_010658 (Shigella boydii CDC 3083-94) |
7e-117 |
99 |
|
hypothetical protein |
NC_004741 (Shigella flexneri 2457T) |
1e-113 |
100 |
|
hypothetical protein |
NC_004337 (Shigella flexneri 301) |
1e-113 |
100 |
|
hypothetical protein |
NC_018650 (Escherichia coli 2009EL-2050) |
2e-113 |
99 |
|
hypothetical protein |
NC_018661 (Escherichia coli 2009EL-2071) |
2e-113 |
99 |
|
hypothetical protein |
NC_018658 (Escherichia coli 2011C-3493) |
2e-113 |
99 |
|
putative plasmid transfer protein |
NC_016822 (Shigella sonnei 53G) |
2e-111 |
99 |
|
hypothetical protein |
NC_007384 (Shigella sonnei Ss046) |
2e-111 |
99 |
|
hypothetical protein |
NC_007613 (Shigella boydii Sb227) |
3e-111 |
99 |
|
hypothetical protein |
NC_007613 (Shigella boydii Sb227) |
3e-111 |
99 |
|
IncI1 conjugal transfer protein TraF |
NC_017642 (Escherichia coli UMNK88) |
3e-109 |
71 |
|
TraF |
NC_011081 (Salmonella enterica SL476) |
3e-109 |
71 |
|
protein TraF |
NC_016904 (Escherichia coli KO11FL) |
4e-109 |
71 |
|
TraF protein |
NC_021811 (Salmonella enterica 41578) |
4e-109 |
71 |
|
conjugal transfer protein TraF |
NC_021813 (Salmonella enterica CFSAN002069) |
4e-109 |
71 |
|
conjugal transfer protein |
NC_017718 (Salmonella enterica SL1344) |
4e-109 |
71 |
|
TraF protein |
NC_017675 (Salmonella enterica ST4/74) |
4e-109 |
71 |
|
F pilus assembly |
NC_018659 (Escherichia coli 2011C-3493) |
5e-109 |
71 |
|
thick pilus signal peptide |
NC_017637 (Escherichia coli W) |
5e-109 |
71 |
|
conjugational transfer protein TraF |
NC_017665 (Escherichia coli W) |
5e-109 |
71 |
|
TraF protein |
NC_011419 (Escherichia coli SE11) |
7e-109 |
71 |
|
hypothetical protein |
NC_014121 (Enterobacter cloacae ATCC 13047) |
3e-94 |
61 |
|
hypothetical protein |
NC_010102 (Salmonella enterica SGSC4150; SPB7) |
1e-91 |
61 |
|
plasmid transfer protein |
NC_013421 (Pectobacterium wasabiae WPP163) |
4e-76 |
55 |
|
TraF like protein |
NC_017845 (Pectobacterium sp. SCC3193) |
2e-75 |
54 |
|
plasmid transfer protein |
NC_004547 (Pectobacterium atrosepticum SCRI1043) |
6e-69 |
54 |
|
hypothetical protein |
NC_022268 (Serratia sp. ATCC 39006) |
2e-68 |
47 |
|
putative plasmid transfer protein |
NC_017531 (Pantoea ananatis AJ13355) |
2e-65 |
47 |
|
conjugal transfer protein TraF |
NC_017554 (Pantoea ananatis PA13) |
9e-65 |
47 |
|
type IV pilus protein, TraF |
NC_016816 (Pantoea ananatis LMG 5342) |
1e-64 |
47 |
|
plasmid transfer protein TraF |
NC_014306 (Erwinia billingiae Eb661) |
1e-62 |
43 |
|
plasmid transfer protein TraF |
NC_010694 (Erwinia tasmaniensis Et1/99) |
3e-60 |
43 |
|
hypothetical protein |
NC_017390 (Erwinia pyrifoliae DSM 12163) |
1e-58 |
46 |
|
plasmid transfer protein |
NC_012214 (Erwinia pyrifoliae Ep1/96) |
1e-58 |
46 |
|
putative plasmid transfer protein TraF |
NC_014837 (Pantoea sp. At-9b) |
1e-58 |
42 |
|
putative plasmid transfer protein |
NC_013592 (Dickeya dadantii Ech586) |
7e-59 |
41 |
|
plasmid transfer protein |
NC_013971 (Erwinia amylovora ATCC 49946) |
6e-58 |
44 |
|
hypothetical protein |
NC_013961 (Erwinia amylovora CFBP1430) |
6e-58 |
44 |
|
Putative plasmid transfer protein |
NC_017445 (Erwinia sp. Ejp617) |
2e-57 |
46 |
|
IncI1 plasmid conjugative transfer protein TraF |
NC_014500 (Dickeya dadantii 3937) |
1e-54 |
42 |
|
hypothetical protein |
NC_014562 (Pantoea vagans C9-1) |
7e-52 |
41 |
SELECT distinct ph.genome_accn, ph.id_genome_orf, ph.position_begin_pai, ph.position_end_pai, ph.position_begin_genome, ph.position_end_genome, ph.identity, ph.qcoverage, ph.tcoverage,
ph.evalue, ph.score, ph.multi_hsp, ph.multi_strand, ph.source_class, hsp, go.name, go.name_alt, go.pid
FROM pai_homolog as ph, genome_orf as go
WHERE ph.pai_accn='AF200692' AND ph.id_pai_orf='4' AND match_level='P'
AND go.genome_accn=ph.genome_accn AND ph.id_genome_orf=go.id_genome_orf
ORDER BY ph.score desc, ph.evalue asc, ph.identity desc