> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  383 bits (1439),  Expect = 4e-108, Method: Compositional matrix adjust.
 Identities = 235/235 (100%), Positives = 235/235 (100%), Gaps = 0/235 (0%)

Query  1    MPLSIRHSLRQSSDTVLPALLTNCRSSILKPLPPACVVRGCGRKPAGSSARSATVHMACP  60
            MPLSIRHSLRQSSDTVLPALLTNCRSSILKPLPPACVVRGCGRKPAGSSARSATVHMACP
Sbjct  1    MPLSIRHSLRQSSDTVLPALLTNCRSSILKPLPPACVVRGCGRKPAGSSARSATVHMACP  60

Query  61   YWRICWSRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLA  120
            YWRICWSRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLA
Sbjct  61   YWRICWSRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLA  120

Query  121  CDALQMALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESF  180
            CDALQMALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESF
Sbjct  121  CDALQMALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESF  180

Query  181  FHSLKVECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENHNLA  235
            FHSLKVECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENHNLA
Sbjct  181  FHSLKVECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENHNLA  235

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  186 bits (688),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 113/206 (55%), Positives = 147/206 (72%), Gaps = 5/206 (2%)

Query  43   KTILNSMERQGLVAKAARKFKVTTDSKHSLQVAPNLL----EQDFSATGPNQKWVGDITY  98
             +IL+++    +V   +RK   ++    ++++A         +  ++ + NQKW GDITY
Sbjct  26   SSILKPLPPACVVRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDITY  85

Query  99   LMTSEGWLYLAVIIDLYSRAVIGWSMSNRMTADLVCSALNMALFRRGFPKSVIVHSDRGS  158
            L T EGWLYLAV+IDL SRAVIGWSMS RMTA+L C AL+MAL RR  P SVIVH+DRG+
Sbjct  86   LRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGG  145

Query  159  QYCSHDYRDLIKKHQLVQSMSRKGNCWDVNACAESFFHSLKVEAIQDEPIMDRETMRQHV  218
            QYCS DY+ ++K+H+L  SMS KG C D NAC ESFFHSLKVE I++E +  RE MR  V
Sbjct  146  QYCSGDYQAMLKRHNLRGSMSAKGYCYD-NACVESFFHSLKVECIHGERFSSREIMRATV  204

Query  219  FEYIEVDYDKTRRHSALSYLSPENFE  244
            F+YIE DY++ RRHSA + LSPE+FE
Sbjct  205  FNYIECDYNRWRRHSACGGLSPEQFE  230

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  185 bits (687),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 113/205 (56%), Positives = 145/205 (71%), Gaps = 4/205 (1%)

Query  66   KTILNSMERQGLVAKAARKFKVTTDSKHSLPVAPNLL----EQDFSATGPNQKWVGDITY  121
             +IL+++    +V   +RK   ++    ++ +A         +  ++ + NQKW GDITY
Sbjct  26   SSILKPLPPACVVRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDITY  85

Query  122  LMTSEGWLYLAVIIDLYSRAVIGWSMSNRMTADLVCSALNMALFRRGFPKSVIVHSDRGS  181
            L T EGWLYLAV+IDL SRAVIGWSMS RMTA+L C AL+MAL RR  P SVIVH+DRG+
Sbjct  86   LRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGG  145

Query  182  QYCSHDYRDLIKKHQLLQSMSRKGNCWDNAVAESFFHSLKVETLQDEPIMDRETMRQHVF  241
            QYCS DY+ ++K+H+L  SMS KG C DNA  ESFFHSLKVE +++E +  RE MR  VF
Sbjct  146  QYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVF  205

Query  242  EYIEVDYNKTRRHSALGYLSPENFE  266
            +YIE DYN+ RRHSA G LSPE+FE
Sbjct  206  NYIECDYNRWRRHSACGGLSPEQFE  230

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  185 bits (687),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 113/205 (56%), Positives = 145/205 (71%), Gaps = 4/205 (1%)

Query  66   KTILNSMERQGLVAKAARKFKVTTDSKHSLPVAPNLL----EQDFSATGPNQKWVGDITY  121
             +IL+++    +V   +RK   ++    ++ +A         +  ++ + NQKW GDITY
Sbjct  26   SSILKPLPPACVVRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDITY  85

Query  122  LMTSEGWLYLAVIIDLYSRAVIGWSMSNRMTADLVCSALNMALFRRGFPKSVIVHSDRGS  181
            L T EGWLYLAV+IDL SRAVIGWSMS RMTA+L C AL+MAL RR  P SVIVH+DRG+
Sbjct  86   LRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGG  145

Query  182  QYCSHDYRDLIKKHQLLQSMSRKGNCWDNAVAESFFHSLKVETLQDEPIMDRETMRQHVF  241
            QYCS DY+ ++K+H+L  SMS KG C DNA  ESFFHSLKVE +++E +  RE MR  VF
Sbjct  146  QYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVF  205

Query  242  EYIEVDYNKTRRHSALGYLSPENFE  266
            +YIE DYN+ RRHSA G LSPE+FE
Sbjct  206  NYIECDYNRWRRHSACGGLSPEQFE  230

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  185 bits (687),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 113/205 (56%), Positives = 145/205 (71%), Gaps = 4/205 (1%)

Query  66   KTILNSMERQGLVAKAARKFKVTTDSKHSLPVAPNLL----EQDFSATGPNQKWVGDITY  121
             +IL+++    +V   +RK   ++    ++ +A         +  ++ + NQKW GDITY
Sbjct  26   SSILKPLPPACVVRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDITY  85

Query  122  LMTSEGWLYLAVIIDLYSRAVIGWSMSNRMTADLVCSALNMALFRRGFPKSVIVHSDRGS  181
            L T EGWLYLAV+IDL SRAVIGWSMS RMTA+L C AL+MAL RR  P SVIVH+DRG+
Sbjct  86   LRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGG  145

Query  182  QYCSHDYRDLIKKHQLLQSMSRKGNCWDNAVAESFFHSLKVETLQDEPIMDRETMRQHVF  241
            QYCS DY+ ++K+H+L  SMS KG C DNA  ESFFHSLKVE +++E +  RE MR  VF
Sbjct  146  QYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVF  205

Query  242  EYIEVDYNKTRRHSALGYLSPENFE  266
            +YIE DYN+ RRHSA G LSPE+FE
Sbjct  206  NYIECDYNRWRRHSACGGLSPEQFE  230

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  185 bits (687),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 113/205 (56%), Positives = 145/205 (71%), Gaps = 4/205 (1%)

Query  66   KTILNSMERQGLVAKAARKFKVTTDSKHSLPVAPNLL----EQDFSATGPNQKWVGDITY  121
             +IL+++    +V   +RK   ++    ++ +A         +  ++ + NQKW GDITY
Sbjct  26   SSILKPLPPACVVRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDITY  85

Query  122  LMTSEGWLYLAVIIDLYSRAVIGWSMSNRMTADLVCSALNMALFRRGFPKSVIVHSDRGS  181
            L T EGWLYLAV+IDL SRAVIGWSMS RMTA+L C AL+MAL RR  P SVIVH+DRG+
Sbjct  86   LRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGG  145

Query  182  QYCSHDYRDLIKKHQLLQSMSRKGNCWDNAVAESFFHSLKVETLQDEPIMDRETMRQHVF  241
            QYCS DY+ ++K+H+L  SMS KG C DNA  ESFFHSLKVE +++E +  RE MR  VF
Sbjct  146  QYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVF  205

Query  242  EYIEVDYNKTRRHSALGYLSPENFE  266
            +YIE DYN+ RRHSA G LSPE+FE
Sbjct  206  NYIECDYNRWRRHSACGGLSPEQFE  230

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  183 bits (679),  Expect = 7e-48, Method: Compositional matrix adjust.
 Identities = 112/205 (55%), Positives = 142/205 (70%), Gaps = 4/205 (1%)

Query  78   KTIMNSMTRQNLVAKAARKFKTTTDSDHQLPVAPNLL----EQNFDTTGPNQKWVGDITY  133
             +I++++    +V   +RK   ++     + +A         +     + NQKW GDITY
Sbjct  26   SSILKPLPPACVVRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDITY  85

Query  134  LMTSEGWLYLAVIIDLYSRAVIGWSMNNRMTAQLACDALTMALFRRGFPKNVIVHSDRGS  193
            L T EGWLYLAV+IDL SRAVIGWSM+ RMTAQLACDAL MAL RR  P +VIVH+DRG+
Sbjct  86   LRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGG  145

Query  194  QYCSHAYRNLIEKHQLTQSMSRKACCWDNACAESFFHSLKVEAIQYEPIMDRETMRQTVF  253
            QYCS  Y+ ++ +H+L  SMS K+ C DNAC ESFFHSLKVE I+ E +  RE MR TVF
Sbjct  146  QYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVF  205

Query  254  EYIEVDYNKTRRHSSLGYLSPENFE  278
            +YIE DYN+ RRHS+ G LSPE+FE
Sbjct  206  NYIECDYNRWRRHSACGGLSPEQFE  230

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  183 bits (679),  Expect = 7e-48, Method: Compositional matrix adjust.
 Identities = 112/205 (55%), Positives = 142/205 (70%), Gaps = 4/205 (1%)

Query  78   KTIMNSMTRQNLVAKAARKFKTTTDSDHQLPVAPNLL----EQNFDTTGPNQKWVGDITY  133
             +I++++    +V   +RK   ++     + +A         +     + NQKW GDITY
Sbjct  26   SSILKPLPPACVVRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDITY  85

Query  134  LMTSEGWLYLAVIIDLYSRAVIGWSMNNRMTAQLACDALTMALFRRGFPKNVIVHSDRGS  193
            L T EGWLYLAV+IDL SRAVIGWSM+ RMTAQLACDAL MAL RR  P +VIVH+DRG+
Sbjct  86   LRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGG  145

Query  194  QYCSHAYRNLIEKHQLTQSMSRKACCWDNACAESFFHSLKVEAIQYEPIMDRETMRQTVF  253
            QYCS  Y+ ++ +H+L  SMS K+ C DNAC ESFFHSLKVE I+ E +  RE MR TVF
Sbjct  146  QYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVF  205

Query  254  EYIEVDYNKTRRHSSLGYLSPENFE  278
            +YIE DYN+ RRHS+ G LSPE+FE
Sbjct  206  NYIECDYNRWRRHSACGGLSPEQFE  230

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  155 bits (570),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 91/204 (45%), Positives = 128/204 (63%), Gaps = 13/204 (6%)

Query  60   TCGENRVAKLMKQAKLRANIGYKRRYFKPSTPHIAADNHLQQQFVVCEPDTAWVGDITYI  119
             CG +  +   + A ++    Y R     +++ +A ++              W GDITY+
Sbjct  40   GCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQK-------------WAGDITYL  86

Query  120  KTYEGWLYLAVVLDLFSRKVIGWSMQPTMTSDIVIKALLMAVWQRPKATQVIVHSDQGSQ  179
            +T EGWLYLAVV+DL SR VIGWSM P MT+++   AL MA+W+R ++  VIVH+D+G+Q
Sbjct  87   RTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGGQ  146

Query  180  YASGDYRDFLKAHNLTPSMSRRGHCLDNAVAESFFHSLKTERVKRKVYATRSEAKADLFD  239
            Y SGDY+  LK HNL  SMS +G C DNA  ESFFHSLK E +    +++R   +A +F+
Sbjct  147  YCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVFN  206

Query  240  YIEVFYNRTRLHSHLGHVSPDEYE  263
            YIE  YNR R HS  G +SP+++E
Sbjct  207  YIECDYNRWRRHSACGGLSPEQFE  230

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  153 bits (563),  Expect = 7e-39, Method: Compositional matrix adjust.
 Identities = 90/204 (45%), Positives = 128/204 (63%), Gaps = 13/204 (6%)

Query  17   TCDENRVAKLMKQAKLRANIGYKRRYFEPSTPHIAADNHLQQQFVVCEPDTAWVGDITYI  76
             C+ +  +   + A ++    Y R     +++ +A ++              W GDITY+
Sbjct  40   GCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQK-------------WAGDITYL  86

Query  77   KTYEGWLYLAVVLDLFSRKVIGWSMQPTMTSDIVIKALLMAVWQRPKATQVIVHSDQGSQ  136
            +T EGWLYLAVV+DL SR VIGWSM P MT+++   AL MA+W+R ++  VIVH+D+G+Q
Sbjct  87   RTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGGQ  146

Query  137  YASGDYRDFLKAHNLTPSMSRRGHCLDNAVAESFFHSLKTERVKRKVYATRSEAKADLFD  196
            Y SGDY+  LK HNL  SMS +G C DNA  ESFFHSLK E +    +++R   +A +F+
Sbjct  147  YCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVFN  206

Query  197  YIEVFYNRTRLHSHLGHVSPDEYE  220
            YIE  YNR R HS  G +SP+++E
Sbjct  207  YIECDYNRWRRHSACGGLSPEQFE  230

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  148 bits (545),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 82/165 (50%), Positives = 116/165 (71%), Gaps = 0/165 (0%)

Query  8    RQFNPDAPDERWVTDITYIRTHEGWLYLAVVVDLFSLKIIGWSMQSRMTKDIVLNAMLMA  67
            R   P A +++W  DITY+RT+EGWLYLAVV+DL S  +IGWSM +RMT ++  +A+ MA
Sbjct  68   RTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMA  127

Query  68   VWRRNPQRSVLVHSDQGSQYTSHEWQSFLKSQGLEGSMSRRGNCHDNAVAESFFQLLKRE  127
            +WRR    SV+VH+D+G+QY S + Q+ LK + L GSMS +G C DNA  ESFF+ LK E
Sbjct  128  LWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVE  187

Query  128  RIKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSNQMSPTEYENQ  172
             I    +++RE  R+ +F+YIE  YN  RRH++   +SP ++EN+
Sbjct  188  CIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  147 bits (543),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 90/182 (50%), Positives = 121/182 (67%), Gaps = 3/182 (1%)

Query  18   RGGVSHIVTPNR---LNRVFNTEQPNQAWVTDVTYIKTHEGWLYLAVVVDLFSRRVIGWS  74
            R++  H+  P +    +R       NQ W  D+TY++T+EGWLYLAVV+DL SR VIGWS
Sbjct  51   RSATVHMACPYWRICWSRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWS  110

Query  75   MQQRMTKELVLDALLMAIWRRKPKQKVVVHSDQGSQYTSHDWSSFLKSNNLEGSMSRRGN  134
            M  RMT +L  DAL MA+WRR+  + V+VH+D+G+QY S D  + LK +NL GSMS +G 
Sbjct  111  MSPRMTAQLACDALQMALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGY  170

Query  135  CHDNAVAESFFQLLKRERIKRKIYSNRAEARRDVFDYIEMFYNSKRRHSSNDQLSPVEYE  194
            C DNA  ESFF+ LK E I    +S+R   R  VF+YIE  YN  RRHS+ + LSP ++E
Sbjct  171  CYDNACVESFFHSLKVECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFE  230

Query  195  KR  196
            ++
Sbjct  231  NH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  147 bits (543),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 90/182 (50%), Positives = 121/182 (67%), Gaps = 3/182 (1%)

Query  18   RGGVSHIVTPNR---LNRVFNTEQPNQAWVTDVTYIKTHEGWLYLAVVVDLFSRRVIGWS  74
            R++  H+  P +    +R       NQ W  D+TY++T+EGWLYLAVV+DL SR VIGWS
Sbjct  51   RSATVHMACPYWRICWSRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWS  110

Query  75   MQQRMTKELVLDALLMAIWRRKPKQKVVVHSDQGSQYTSHDWSSFLKSNNLEGSMSRRGN  134
            M  RMT +L  DAL MA+WRR+  + V+VH+D+G+QY S D  + LK +NL GSMS +G 
Sbjct  111  MSPRMTAQLACDALQMALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGY  170

Query  135  CHDNAVAESFFQLLKRERIKRKIYSNRAEARRDVFDYIEMFYNSKRRHSSNDQLSPVEYE  194
            C DNA  ESFF+ LK E I    +S+R   R  VF+YIE  YN  RRHS+ + LSP ++E
Sbjct  171  CYDNACVESFFHSLKVECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFE  230

Query  195  KR  196
            ++
Sbjct  231  NH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  147 bits (541),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 92/197 (47%), Positives = 132/197 (68%), Gaps = 12/197 (6%)

Query  80   GYRRRPGMRGGKPAVVAPNHLQRQF---------SVAQPNQSWVTDITYIRTHEGWLYLA  130
            G  R+P+  ++++A V   H+   +         +    NQ W  DITY+RT+EGWLYLA
Sbjct  40   GCGRKPAGSSARSATV---HMACPYWRICWSRTSAPVARNQKWAGDITYLRTDEGWLYLA  96

Query  131  VVVDLFSRQVVGWSMGSRIDTGLALDALVMALWRRRPEQPVTVHSDQGSQFTGHDWQDFL  190
            VV+DL SR V+GWSM++R+ + LA DAL MALWRRR  ++V VH+D+G+Q+ + D Q  L
Sbjct  97   VVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGGQYCSGDYQAML  156

Query  191  RDHKLICSMSRRGNCHDNAVAESFFQLLKRERIRRQIYPTRDDARADVFNYIEMFYNPKR  250
            + H+L  SMS +G C DNA  ESFF+ LK E I+ + +++R+  RA VFNYIE  YN  R
Sbjct  157  KRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVFNYIECDYNRWR  216

Query  251  RHGTAGDTSPVEFERRH  267
            RH++ G+ SP +FE ++
Sbjct  217  RHSACGGLSPEQFENHN  233

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  146 bits (538),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 83/186 (45%), Positives = 122/186 (66%), Gaps = 3/186 (1%)

Query  14   SPRARKGEVSIVTPNR---LQRQFNPATPDVRWVTDITYIRTHEGLLYLTVVVDLFSRKV  70
            ++ AR + V +  P +     R   P + + +W  DITY+RT+EG LYL+VV+DL SR V
Sbjct  47   GSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAV  106

Query  71   IGWSMQPRMTKDIVLNALLMAVWRRNPQKQVLVHSDQGSQYTSHEWQSFLKSHDLEGCMS  130
            IGWSM PRMT ++  +AL MA+WRR     V+VH+D+G+QY S + Q+ LK H+L G MS
Sbjct  107  IGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMS  166

Query  131  RRGNRHDNAVAESFFQQLKRERIKNKIYGKREEARSDIFDYIEMFYNSKRRHGSSDQMPP  190
             +G   DNA  ESFF+ LK E I    ++ RE  R+ +F+YIE  YN  RRH++ + ++P
Sbjct  167  AKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSP  226

Query  191  TEYEKQ  196
             ++E++
Sbjct  227  EQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  146 bits (538),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 91/207 (44%), Positives = 137/207 (67%), Gaps = 14/207 (6%)

Query  79   TCGRNRVGRLMQAEGVAFANGLSPSSWVLWRKTNRGLAQPPCPAVQVSEPNKVWVTDISY  138
             CGR+  G   ++  V  A    P  ++ W +T+  +A+           N+ W  DI+Y
Sbjct  40   GCGRKPAGSSARSATVHMA---CPYWRICWSRTSAPVAR-----------NQKWAGDITY  85

Query  139  IRTYEGWLYLAVVLDLFSRQVIGWSMKPRMSSDLAIDAMLMALWRRKPQQQVMIHSDQGS  198
            +RT EGWLYLAVV+DL SR VIGWSM PRM+++LA DA+ MALWRR+  + V++H+D+G+
Sbjct  86   LRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGG  145

Query  199  QFSSSDWQSFLKANNVVSSMSRRGNCHDNAVAESFFQLLKRERVRRKTYATRDEARSDIF  258
            Q+ S+D Q+ LK +N+ +SMS +G C DNA  ESFF+ LK E ++   +++R+  R+ +F
Sbjct  146  QYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVF  205

Query  259  DYIEMFYNPKRRHSSAMQLSPVEYEKR  285
            +YIE  YN  RRHS+   LSP ++E++
Sbjct  206  NYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  144 bits (529),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 90/195 (47%), Positives = 124/195 (64%), Gaps = 6/195 (3%)

Query  35   VRGYKRNP--SFGRGDVSHTAPN----TLNRGFDIAEPNKVWVTDFTYIRTHEGWLYLTV  88
            VRG  R+P  S +R+   H A        +R       N+ W  D+TY+RT+EGWLYL+V
Sbjct  38   VRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDITYLRTDEGWLYLAV  97

Query  89   VIDLFSRQVVGWTMKSTARADLVIDALLMAVWRRTPTEKVLIHSDQGVQYTCSDWRSFLK  148
            VIDL SR V+GW+M +   A+L  DAL MA+WRR   E V++H+D+G QY  +D ++ LK
Sbjct  98   VIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGGQYCSGDYQAMLK  157

Query  149  EHNLEASMSRRGNCHDNAVAESFFSLLKKDRIKRKVYKTRDEARAEIFNYIEYFYNPVRH  208
             HNL +SMS +G C DNA  ESFF  LK + I    + +R+  RA +FNYIE  YN  R+
Sbjct  158  RHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVFNYIECDYNRWRR  217

Query  209  HGSNNGLSPMNFEKQ  223
            H++  GLSP +FE++
Sbjct  218  HSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  144 bits (529),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 90/195 (47%), Positives = 124/195 (64%), Gaps = 6/195 (3%)

Query  35   VRGYKRNP--SFGRGDVSHTAPN----TLNRGFDIAEPNKVWVTDFTYIRTHEGWLYLTV  88
            VRG  R+P  S +R+   H A        +R       N+ W  D+TY+RT+EGWLYL+V
Sbjct  38   VRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDITYLRTDEGWLYLAV  97

Query  89   VIDLFSRQVVGWTMKSTARADLVIDALLMAVWRRTPTEKVLIHSDQGVQYTCSDWRSFLK  148
            VIDL SR V+GW+M +   A+L  DAL MA+WRR   E V++H+D+G QY  +D ++ LK
Sbjct  98   VIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGGQYCSGDYQAMLK  157

Query  149  EHNLEASMSRRGNCHDNAVAESFFSLLKKDRIKRKVYKTRDEARAEIFNYIEYFYNPVRH  208
             HNL +SMS +G C DNA  ESFF  LK + I    + +R+  RA +FNYIE  YN  R+
Sbjct  158  RHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVFNYIECDYNRWRR  217

Query  209  HGSNNGLSPMNFEKQ  223
            H++  GLSP +FE++
Sbjct  218  HSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  144 bits (529),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 90/195 (47%), Positives = 124/195 (64%), Gaps = 6/195 (3%)

Query  35   VRGYKRNP--SFGRGDVSHTAPN----TLNRGFDIAEPNKVWVTDFTYIRTHEGWLYLTV  88
            VRG  R+P  S +R+   H A        +R       N+ W  D+TY+RT+EGWLYL+V
Sbjct  38   VRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDITYLRTDEGWLYLAV  97

Query  89   VIDLFSRQVVGWTMKSTARADLVIDALLMAVWRRTPTEKVLIHSDQGVQYTCSDWRSFLK  148
            VIDL SR V+GW+M +   A+L  DAL MA+WRR   E V++H+D+G QY  +D ++ LK
Sbjct  98   VIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGGQYCSGDYQAMLK  157

Query  149  EHNLEASMSRRGNCHDNAVAESFFSLLKKDRIKRKVYKTRDEARAEIFNYIEYFYNPVRH  208
             HNL +SMS +G C DNA  ESFF  LK + I    + +R+  RA +FNYIE  YN  R+
Sbjct  158  RHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVFNYIECDYNRWRR  217

Query  209  HGSNNGLSPMNFEKQ  223
            H++  GLSP +FE++
Sbjct  218  HSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  144 bits (529),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 90/195 (47%), Positives = 124/195 (64%), Gaps = 6/195 (3%)

Query  35   VRGYKRNP--SFGRGDVSHTAPN----TLNRGFDIAEPNKVWVTDFTYIRTHEGWLYLTV  88
            VRG  R+P  S +R+   H A        +R       N+ W  D+TY+RT+EGWLYL+V
Sbjct  38   VRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDITYLRTDEGWLYLAV  97

Query  89   VIDLFSRQVVGWTMKSTARADLVIDALLMAVWRRTPTEKVLIHSDQGVQYTCSDWRSFLK  148
            VIDL SR V+GW+M +   A+L  DAL MA+WRR   E V++H+D+G QY  +D ++ LK
Sbjct  98   VIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGGQYCSGDYQAMLK  157

Query  149  EHNLEASMSRRGNCHDNAVAESFFSLLKKDRIKRKVYKTRDEARAEIFNYIEYFYNPVRH  208
             HNL +SMS +G C DNA  ESFF  LK + I    + +R+  RA +FNYIE  YN  R+
Sbjct  158  RHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVFNYIECDYNRWRR  217

Query  209  HGSNNGLSPMNFEKQ  223
            H++  GLSP +FE++
Sbjct  218  HSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  144 bits (531),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 98/220 (45%), Positives = 138/220 (63%), Gaps = 8/220 (3%)

Query  64   TDLMELGESCGKNRVHKLMRLAGIKSQVGYRKP--RYSKGNVSHIADNYLQ----QDFAV  117
            T L  L  +C ++ + K +  A +    G RKP    +++   H+A  Y +    +  A 
Sbjct  15   TVLPALLTNC-RSSILKPLPPACVVRGCG-RKPAGSSARSATVHMACPYWRICWSRTSAP  72

Query  118  SEPNKVWVTDITYIRTYEGWLYLAVVIDLFSRQIIGWSMQHRMHSDIVLKALLMAVWRRK  177
               N+ W  DITY+RT EGWLYLAVVIDL SR +IGWSM  RM +++   AL MA+WRR+
Sbjct  73   VARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRR  132

Query  178  PDNNVIIHSDQGSQYTSSEWQSFLKTHNLTCSMSRRGNCYDNAVAENFFQLLKRERIKKR  237
              ++VI+H+D+G+QY S++ Q+ LK HNL  SMS +G CYDNA  E+FF+ LK E I   
Sbjct  133  RPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGE  192

Query  238  IYKNREEARRDIFDYIEMFYNPIRRHGNNGNLSPVEFEKN  277
             + +RE  R  +F+YIE  YN  RRH+  G LSP +FE++
Sbjct  193  RFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  144 bits (528),  Expect = 4e-36, Method: Compositional matrix adjust.
 Identities = 90/195 (47%), Positives = 124/195 (64%), Gaps = 6/195 (3%)

Query  9    VRGYKRNP--SFGRGDVSHTAPN----TLNRGFDIAEPNKVWVTDFTYIRTHEGWLYLTV  62
            VRG  R+P  S +R+   H A        +R       N+ W  D+TY+RT+EGWLYL+V
Sbjct  38   VRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDITYLRTDEGWLYLAV  97

Query  63   VIDLFSRQVVGWTMKSTARADLVIDALLMAVWRRTPTEKVLIHSDQGVQYTCSDWRSFLK  122
            VIDL SR V+GW+M +   A+L  DAL MA+WRR   E V++H+D+G QY  +D ++ LK
Sbjct  98   VIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGGQYCSGDYQAMLK  157

Query  123  EHNLEASMSRRGNCHDNAVAESFFSLLKKDRIKRKVYKTRDEARAEIFNYIEYFYNPVRH  182
             HNL +SMS +G C DNA  ESFF  LK + I    + +R+  RA +FNYIE  YN  R+
Sbjct  158  RHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVFNYIECDYNRWRR  217

Query  183  HGSNNGLSPMNFEKQ  197
            H++  GLSP +FE++
Sbjct  218  HSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  144 bits (529),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 96/222 (44%), Positives = 144/222 (65%), Gaps = 15/222 (6%)

Query  73   LRELGETCGRNRVGRLMQAEGLRSQTGYRRRPGFYGGKPTVASPNHLARQF------KVS  126
            L  L   C  + +  L  A  +R   G  R+P+   G ++ ++  H+A  +      + S
Sbjct  17   LPALLTNCRSSILKPLPPACVVR---GCGRKPA---GSSARSATVHMACPYWRICWSRTS  70

Query  127  EP---NKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMCSDLALDAMLMAVWR  183
             P   N+ W  DITY+RT EGWLYLAVV+DL SR VIGWSM PRM ++LA DA+ MA+WR
Sbjct  71   APVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWR  130

Query  184  RKPRQQVMIHSDQGSQFSSSDWQSFLKANNIISSMSRRGNCHDNAVAESFFQLLKRERIR  243
            R+  + V++H+D+G+Q+ S+D Q+ LK +N+ +SMS +G C DNA  ESFF+ LK E I+
Sbjct  131  RRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIH  190

Query  244  RKIYATRDEARSDIFDYIEMFYNPRRRHSSAMQLSPVEYEKR  285
               +++R+  R+ +F+YIE  YN +RRHS+   LSP ++E++
Sbjct  191  GERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  144 bits (529),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 96/222 (44%), Positives = 144/222 (65%), Gaps = 15/222 (6%)

Query  73   LRELGETCGRNRVGRLMQAEGLRSQTGYRRRPGFYGGKPTVASPNHLARQF------KVS  126
            L  L   C  + +  L  A  +R   G  R+P+   G ++ ++  H+A  +      + S
Sbjct  17   LPALLTNCRSSILKPLPPACVVR---GCGRKPA---GSSARSATVHMACPYWRICWSRTS  70

Query  127  EP---NKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMCSDLALDAMLMAVWR  183
             P   N+ W  DITY+RT EGWLYLAVV+DL SR VIGWSM PRM ++LA DA+ MA+WR
Sbjct  71   APVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWR  130

Query  184  RKPRQQVMIHSDQGSQFSSSDWQSFLKANNIISSMSRRGNCHDNAVAESFFQLLKRERIR  243
            R+  + V++H+D+G+Q+ S+D Q+ LK +N+ +SMS +G C DNA  ESFF+ LK E I+
Sbjct  131  RRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIH  190

Query  244  RKIYATRDEARSDIFDYIEMFYNPRRRHSSAMQLSPVEYEKR  285
               +++R+  R+ +F+YIE  YN +RRHS+   LSP ++E++
Sbjct  191  GERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  144 bits (529),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 96/222 (44%), Positives = 144/222 (65%), Gaps = 15/222 (6%)

Query  73   LRELGETCGRNRVGRLMQAEGLRSQTGYRRRPGFYGGKPTVASPNHLARQF------KVS  126
            L  L   C  + +  L  A  +R   G  R+P+   G ++ ++  H+A  +      + S
Sbjct  17   LPALLTNCRSSILKPLPPACVVR---GCGRKPA---GSSARSATVHMACPYWRICWSRTS  70

Query  127  EP---NKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMCSDLALDAMLMAVWR  183
             P   N+ W  DITY+RT EGWLYLAVV+DL SR VIGWSM PRM ++LA DA+ MA+WR
Sbjct  71   APVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWR  130

Query  184  RKPRQQVMIHSDQGSQFSSSDWQSFLKANNIISSMSRRGNCHDNAVAESFFQLLKRERIR  243
            R+  + V++H+D+G+Q+ S+D Q+ LK +N+ +SMS +G C DNA  ESFF+ LK E I+
Sbjct  131  RRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIH  190

Query  244  RKIYATRDEARSDIFDYIEMFYNPRRRHSSAMQLSPVEYEKR  285
               +++R+  R+ +F+YIE  YN +RRHS+   LSP ++E++
Sbjct  191  GERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  144 bits (528),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 96/222 (44%), Positives = 144/222 (65%), Gaps = 15/222 (6%)

Query  57   LRELGETCGRNRVGRLMQAEGLRSQTGYRRRPGFYGGKPTVASPNHLARQF------KVS  110
            L  L   C  + +  L  A  +R   G  R+P+   G ++ ++  H+A  +      + S
Sbjct  17   LPALLTNCRSSILKPLPPACVVR---GCGRKPA---GSSARSATVHMACPYWRICWSRTS  70

Query  111  EP---NKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMCSDLALDAMLMAVWR  167
             P   N+ W  DITY+RT EGWLYLAVV+DL SR VIGWSM PRM ++LA DA+ MA+WR
Sbjct  71   APVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWR  130

Query  168  RKPRQQVMIHSDQGSQFSSSDWQSFLKANNIISSMSRRGNCHDNAVAESFFQLLKRERIR  227
            R+  + V++H+D+G+Q+ S+D Q+ LK +N+ +SMS +G C DNA  ESFF+ LK E I+
Sbjct  131  RRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIH  190

Query  228  RKIYATRDEARSDIFDYIEMFYNPRRRHSSAMQLSPVEYEKR  269
               +++R+  R+ +F+YIE  YN +RRHS+   LSP ++E++
Sbjct  191  GERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  144 bits (530),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 95/222 (43%), Positives = 141/222 (64%), Gaps = 15/222 (6%)

Query  73   LRELGETCGRNRVGRLMQVEGLRSQTGYRRRPGFYGGKPTVASPNHLARQF------KVS  126
            L  L   C   R + L  +       G  R+P+   G ++ ++  H+A  +      + S
Sbjct  17   LPALLTNC---RSSILKPLPPACVVRGCGRKPA---GSSARSATVHMACPYWRICWSRTS  70

Query  127  EP---NKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMCSDLAIDAMLMAVWR  183
             P   N+ W  DITY+RT EGWLYLAVV+DL SR VIGWSM PRM ++LA DA+ MA+WR
Sbjct  71   APVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWR  130

Query  184  RKPQQQVMIHSDQGSQFSSSDWQSFLKANNVISSMSRRGNCHDNAVAESFFQLLKRERIR  243
            R+  + V++H+D+G+Q+ S+D Q+ LK +N+ +SMS +G C DNA  ESFF+ LK E I+
Sbjct  131  RRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIH  190

Query  244  RKTYATRDEARSDIFDYIEMFYNPKRRHSSAMQLSPVEYEKR  285
               +++R+  R+ +F+YIE  YN  RRHS+   LSP ++E++
Sbjct  191  GERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  144 bits (528),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 95/222 (43%), Positives = 143/222 (65%), Gaps = 15/222 (6%)

Query  73   LRELGETCGRNRVGRLMQAEGLRSQTGYRRRPGFYGGKPTVASPNHLARQF------KVS  126
            L  L   C  + +  L  A  +R   G  R+P+   G ++ ++  H+A  +      + S
Sbjct  17   LPALLTNCRSSILKPLPPACVVR---GCGRKPA---GSSARSATVHMACPYWRICWSRTS  70

Query  127  EP---NKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMCSDLAIDAMLMAVWR  183
             P   N+ W  DITY+RT EGWLYLAVV+DL SR VIGWSM PRM ++LA DA+ MA+WR
Sbjct  71   APVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWR  130

Query  184  RKPQQQVMIHSDQGSQFSSSDWQSFLKANNVVSSMSRRGNCHDNAVAESFFQLLKRERVR  243
            R+  + V++H+D+G+Q+ S+D Q+ LK +N+ +SMS +G C DNA  ESFF+ LK E ++
Sbjct  131  RRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIH  190

Query  244  RKTYATRDEARSDIFDYIEMFYNPKRRHSSAMQLSPVEYEKR  285
               +++R+  R+ +F+YIE  YN  RRHS+   LSP ++E++
Sbjct  191  GERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  144 bits (528),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 95/222 (43%), Positives = 143/222 (65%), Gaps = 15/222 (6%)

Query  73   LRELGETCGRNRVGRLMQAEGLRSQTGYRRRPGFYGGKPTVASPNHLARQF------KVS  126
            L  L   C  + +  L  A  +R   G  R+P+   G ++ ++  H+A  +      + S
Sbjct  17   LPALLTNCRSSILKPLPPACVVR---GCGRKPA---GSSARSATVHMACPYWRICWSRTS  70

Query  127  EP---NKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMCSDLAIDAMLMAVWR  183
             P   N+ W  DITY+RT EGWLYLAVV+DL SR VIGWSM PRM ++LA DA+ MA+WR
Sbjct  71   APVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWR  130

Query  184  RKPQQQVMIHSDQGSQFSSSDWQSFLKANNVVSSMSRRGNCHDNAVAESFFQLLKRERVR  243
            R+  + V++H+D+G+Q+ S+D Q+ LK +N+ +SMS +G C DNA  ESFF+ LK E ++
Sbjct  131  RRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIH  190

Query  244  RKTYATRDEARSDIFDYIEMFYNPKRRHSSAMQLSPVEYEKR  285
               +++R+  R+ +F+YIE  YN  RRHS+   LSP ++E++
Sbjct  191  GERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  144 bits (528),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 95/222 (43%), Positives = 143/222 (65%), Gaps = 15/222 (6%)

Query  73   LRELGETCGRNRVGRLMQAEGLRSQTGYRRRPGFYGGKPTVASPNHLARQF------KVS  126
            L  L   C  + +  L  A  +R   G  R+P+   G ++ ++  H+A  +      + S
Sbjct  17   LPALLTNCRSSILKPLPPACVVR---GCGRKPA---GSSARSATVHMACPYWRICWSRTS  70

Query  127  EP---NKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMCSDLAIDAMLMAVWR  183
             P   N+ W  DITY+RT EGWLYLAVV+DL SR VIGWSM PRM ++LA DA+ MA+WR
Sbjct  71   APVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWR  130

Query  184  RKPQQQVMIHSDQGSQFSSSDWQSFLKANNVVSSMSRRGNCHDNAVAESFFQLLKRERVR  243
            R+  + V++H+D+G+Q+ S+D Q+ LK +N+ +SMS +G C DNA  ESFF+ LK E ++
Sbjct  131  RRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIH  190

Query  244  RKTYATRDEARSDIFDYIEMFYNPKRRHSSAMQLSPVEYEKR  285
               +++R+  R+ +F+YIE  YN  RRHS+   LSP ++E++
Sbjct  191  GERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  143 bits (527),  Expect = 5e-36, Method: Compositional matrix adjust.
 Identities = 94/208 (46%), Positives = 132/208 (64%), Gaps = 7/208 (3%)

Query  21   NRVLRLMKQAGIKAQVGYRKPRSSKGKP---HIVTPNR---LKRQFSPATPNEAWVTDIT  74
            + +L+ +  A +    G RKP +S +++   H+  P +     R  +P + N+ W  DIT
Sbjct  26   SSILKPLPPACVVRGCG-RKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDIT  84

Query  75   HIRTHEGWLYLAVVVDLYSRRVVGWSMQSRITKELVLNALLMAVWRRNPVTPVTVHSDQG  134
             +RT+EGWLYLAVV+DL SR V+GWSM +R+T +L  +AL MA+WRR    +V VH+D+G
Sbjct  85   YLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRG  144

Query  135  SQYTSHDWSAFLKAHGLEGSMSRRGNCHDNAVAESFFQLLKRERVKRKIYSTRQEARNDI  194
            +QY S D  A LK H L GSMS +G C DNA  ESFF+ LK E +    +S+R+  R  +
Sbjct  145  GQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATV  204

Query  195  FDYIEMFYNSKRRHSFNNQMSPVEFENR  222
            F+YIE  YN  RRHS    +SP +FEN+
Sbjct  205  FNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  142 bits (524),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 87/201 (44%), Positives = 128/201 (64%), Gaps = 10/201 (4%)

Query  12   ACRDKGSGRVPEPAGTQRRGLYRIAQ-------QAPATVQSGCANERWVTDITYIRTHEG  64
            AC  +G GR P  ++++   +            +++A V     N++W  DITY+RT+EG
Sbjct  35   ACVVRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVAR---NQKWAGDITYLRTDEG  91

Query  65   WLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWRGNPQRKVLVHSDQGSQYTNHE  124
            WLYLAVV+DL SR +IGWSM +RMT ++  +AL MA+WR      V+VH+D+G+QY + +
Sbjct  92   WLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGGQYCSGD  151

Query  125  WQSFLKSHGLDGSMSRRGNCHDNAVAESFFQLLKRERIKKKIYGTREEACSDIFDYIEMF  184
             Q+ LK H L GSMS +G C DNA  ESFF+ LK E I    +++RE   + +F+YIE  
Sbjct  152  YQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVFNYIECD  211

Query  185  YNSKRRHGSSNQMSPTEYENQ  205
            YN  RRH++   +SP ++EN+
Sbjct  212  YNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  142 bits (521),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 99/220 (45%), Positives = 138/220 (63%), Gaps = 8/220 (3%)

Query  64   TDLMELGESCGKNRVHKLMRLAGIKSQVGYRKP--RYSKGNVSHIADNYLQ----QDFAV  117
            T L  L  +C ++ + K +  A +    G RKP    +++   H+A  Y +    +  A 
Sbjct  15   TVLPALLTNC-RSSILKPLPPACVVRGCG-RKPAGSSARSATVHMACPYWRICWSRTSAP  72

Query  118  SEPNKVWVTDITYIRTYEGWLYLAVVIDLFSRQIIGWSMQHRMHSDIVLKALLMAVWRRK  177
               N+ W  DITY+RT EGWLYLAVVIDL SR +IGWSM  RM +++   AL MA+WRR+
Sbjct  73   VARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRR  132

Query  178  PDNNVIIHSDQGSQYTSSEWQSFLKTHNLTCSMSRRGNCYDNAVAESFFQLLKRERIKRR  237
              ++VI+H+D+G+QY S++ Q+ LK HNL  SMS +G CYDNA  ESFF+ LK E I   
Sbjct  133  RPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGE  192

Query  238  IYKNREEARRDIFDYIEMFYNPIRRHGNNGYLSPVEFEKN  277
             + +RE  R  +F+YIE  YN  RRH+  G LSP +FE++
Sbjct  193  RFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  142 bits (523),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 95/222 (43%), Positives = 143/222 (65%), Gaps = 15/222 (6%)

Query  73   LRELGEECGRNRVERLMRAEGLRSQTGYRRRPGFYGGKPTVASPNHLARQF------KVS  126
            L  L  +C  + +  L  A  +R   G  R+P+   G ++ ++  H+A  +      + S
Sbjct  17   LPALLTNCRSSILKPLPPACVVR---GCGRKPA---GSSARSATVHMACPYWRICWSRTS  70

Query  127  EP---NKVWVTDITYIRTYEGWLYLAVVLDLFSRQIIGWSMKPRMCSDLAIDAMLMAVWR  183
             P   N+ W  DITY+RT EGWLYLAVV+DL SR +IGWSM PRM ++LA DA+ MA+WR
Sbjct  71   APVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWR  130

Query  184  RKPQQQVMIHSDQVSQFSSSDWQGFLKANNVISSMSRRGNCHDNAVAESFFQLLKRERIR  243
            R+  + V++H+D+ +Q+ S+D Q+ LK +N+ +SMS +G C DNA  ESFF+ LK E I+
Sbjct  131  RRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIH  190

Query  244  RKIYTTREEARSDIFDYIEMFYNPKRRHSSAMQLSPIEYEKR  285
               +++RE  R+ +F+YIE  YN  RRHS+   LSP ++E++
Sbjct  191  GERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  141 bits (519),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 94/222 (43%), Positives = 141/222 (64%), Gaps = 15/222 (6%)

Query  11   LRELGETCGRNRVGRLMQAEGLRSQTGYRRRPGFYGGKPTAASPNHLARQF------KVS  64
            L  L   C  + +  L  A  +R   G  R+P+   G ++ ++  H+A  +      + S
Sbjct  17   LPALLTNCRSSILKPLPPACVVR---GCGRKPA---GSSARSATVHMACPYWRICWSRTS  70

Query  65   EP---NKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMCSDLAIDAMLMAVWR  121
             P   N+ W  DITY+RT EGWLYLAVV+DL SR VIGWSM PRM ++LA DA+ MA+WR
Sbjct  71   APVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWR  130

Query  122  RKPQQQVMIHSDQGSQFSSSDWQSFLKANNVISSMSRRGNCHDTAVAESFFQLLKRERIR  181
            R+  + V++H+D+G+Q+ S+D Q+ LK +N+ +SMS +G C D A  ESFF+ LK E I+
Sbjct  131  RRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIH  190

Query  182  RKIYATRDEARSDIFDYIEMFYNPKRRHSSAMQLCPVEYEKR  223
               +++R+  R+ +F+YIE  YN  RRHS+   L P ++E++
Sbjct  191  GERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  139 bits (511),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 93/210 (45%), Positives = 133/210 (64%), Gaps = 3/210 (1%)

Query  76   LTSGRERIARLMRYAGLRAQPKRRQRPRDARTDVVHTLAP---NVLDRQFTATAPNQKWV  132
            LT+ R  I + +  A +     R+     AR+  VH   P       R  ++ A NQKW 
Sbjct  21   LTNCRSSILKPLPPACVVRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWA  80

Query  133  ADFTYVWTGEGWLFVAVVLDLFSRRVVGWSMQAAMTAQLVADALVMAVWRRGRTTALVHH  192
            +D+TY++T+EGWL++AVV+DL SR V+GWSM + MTAQL  DAL MA+WRR R  +++ H
Sbjct  81   GDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVH  140

Query  193  SDRGSQYTSEHFQRLLRDIGVTCSMSRAGNVWDNAVAESFFATLKTERVHRQHYRTRNDA  252
            +DRG+QY S ++Q +L+   +  SMS  G   DNA  ESFF +LK E +H +++ +R+  
Sbjct  141  TDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIM  200

Query  253  RADIFHFIERFYNPARRHSKLGYLSPLDFE  282
            RA +F++IE  YN  RRHS  G LSP +FE
Sbjct  201  RATVFNYIECDYNRWRRHSACGGLSPEQFE  230

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  139 bits (511),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 91/210 (44%), Positives = 134/210 (64%), Gaps = 15/210 (7%)

Query  72   TAMGQACGRHRVARLMREAGLRVRSRKRWRLVSSSRHDLPIAPNHLDRQFVSDRANRHWV  131
            + + ++CGR   +   R A +++     WR +  SR   P+A N+             W 
Sbjct  35   ACVVRGCGRKPAGSSARSATVHMACPY-WR-ICWSRTSAPVARNQ------------KWA  80

Query  132  SDMTYVRTAQGWLYLAVVLDLYSRAVVGWAMHHRMQQALVHAALEMAVARRQPQAEVLLH  191
            +D+TY+RT +GWLYLAVV+DL SRAV+GW+M  RM   L   AL+MA+ RR+    V++H
Sbjct  81   GDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVH  140

Query  192  SDRGSQYCAYDYQALLRRHRIVPSHSRPGNCWDNAAMESFFRSLKAERVYLTRYASYQEA  251
            +DRG+QYC+ DYQA+L+RH +  S S  G C DNA +ESFF+SLK E +   R++S +  
Sbjct  141  TDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIM  200

Query  252  KTDLFDYIRF-YNHRRRHSTLGYLSPMEFE  280
            ++ +F+YI   YN++RRHS+ G LSP +FE
Sbjct  201  RATVFNYIECDYNRWRRHSACGGLSPEQFE  230

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  138 bits (508),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 83/166 (50%), Positives = 114/166 (69%), Gaps = 0/166 (0%)

Query  31   AREFNPRAPNQSWVTDITYIKTHEGWLYLAIVVDLFSRKVIGWSMKSRITKELVLDALLM  90
            +R   P A NQ W  DITY++T+EGWLYLA+V+DL SR VIGWSM +R+T +L  DAL M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  91   AIWRCSPSQKVPVHSDQGSQYTSHDWNKFLKQHGLEASMSRRGNCHDNAVAESFFQLLKR  150
            A+WR   ++ V VH+D+G+QY S D +  LK+H L +SMS +G C DNA  ESFF+ LK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  151  ERVKRKIYSTREDARMDIFEYIEMFYNVKRRHGSNNQLSLVEYEKQ  196
            E +    +S+RE  R  +F+YIE  YN  RRH++   LS  ++E++
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  138 bits (508),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 87/212 (42%), Positives = 130/212 (62%), Gaps = 6/212 (2%)

Query  56   SENRVARLASLAGVTAQIGYKRRPARYGGKPAVVADNTL------DRQFEVDMTALVWVT  109
            ++ R + L +L+      G  R+PA  ++++A V            R          W  
Sbjct  22   TNCRSSILKPLPPACVVRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAG  81

Query  110  DITYIKTHEGWSYLAVVIDLFSRRVVGWSMQSRMTTDLALQALLSAVWRRKPKTKVMVHS  169
            DITY++T+EGW YLAVVIDL SR V+GWSM +RMT++LA +AL  A+WRR+    V+VH+
Sbjct  82   DITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHT  141

Query  170  GQGSQFTSKEWQSFLSKHNLDASMSRRGNCHDNAVAESFFQLLKRERIRRRMYLTRDAAR  229
            ++G+Q+ S + Q+ L +HNL +SMS +G C DNA  ESFF+ LK E I+   + +R+  R
Sbjct  142  DRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMR  201

Query  230  QDMFDYIEMFYNPNRKHTNNGMLSPVDYETKQ  261
              +F+YIE  YN  R+H+  G LSP ++E  +
Sbjct  202  ATVFNYIECDYNRWRRHSACGGLSPEQFENHN  233

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  135 bits (496),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 84/165 (51%), Positives = 113/165 (69%), Gaps = 0/165 (0%)

Query  18   ARDFNPPRPDRTWATDITYVPTREGWLYLAVVLDLFSRRVIGWAMDRCIDRHLVLSALDM  77
            +R   P   ++ WA DITY+ T EGWLYLAVV+DL SR VIGW+M   +  +L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  78   ALKGRCPPAGLLHHSDRGSQYASEDYQRALAARGIRFSMSRKGNCWDNAVVESFFSTLKT  137
            AL  R  P +++ H+DRG+QY S DYQ  L  + +R SMS KG C DNA VESFF +LK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  138  ELVHDADFSTREAAKGGLFEFIEVFYNRKRRHSSLGYVSPADFEK  182
            E +H+  FS+RE  ++ +F++IE  YNR RRHS+ G +SP +FE+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFEN  231

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  132 bits (485),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 94/218 (44%), Positives = 132/218 (61%), Gaps = 8/218 (3%)

Query  57   LRDLGEQCGINRVHRLMQRAGLRAQVGYRKP---RTRSGEQHVVTPNR---LERQFNPLA  110
            L  L  +C  + +  L     +R+    RKP    +RS+  H+  P +     R   P+A
Sbjct  17   LPALLTNCRSSILKPLPPACVVRGCG--RKPAGSSARSATVHMACPYWRICWSRTSAPVA  74

Query  111  PNKVWVTDITYIKTHEGWLYLGAVMDLFSRRIIGWSMGRRITKELALYALLMAVWRRKPA  170
             N+ W  DITY++T+EGWLYL+ V+DL SR +IGWSM+ R+T +LA  AL MA+WRR+ +
Sbjct  75   RNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRP  134

Query  171  GKVLVHSDQGSQYTSHDWGEFLSAHGLEGSMSRLGNSHDNAVAESFFQLLKRERIKRKIY  230
              V+VH+D+G+QY S D    L  H L GSMS  G   DNA  ESFF+ LK E I    +
Sbjct  135  ESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERF  194

Query  231  AIRDDAKMDVFNYIEMFYNPKRQHSSNDGLSPLEYERQ  268
            + R+  +  VFNYIE  YN  R+HS+ +GLSP ++E +
Sbjct  195  SSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  132 bits (485),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 85/192 (45%), Positives = 121/192 (64%), Gaps = 7/192 (3%)

Query  12   KAFNYGGHALTMHKLRTTSFWR-----DFSTDRPNQKWVTDITYVWVKNQWLYLATVMDL  66
            K+   ++++ T+H   + ++WR       +    NQKW  DITY++  + WLYLA V+DL
Sbjct  44   KPAGSSARSATVHM--ACPYWRICWSRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDL  101

Query  67   YSRRIIGWSLDTGMTEQLITRAMQMAIDARGVAPGLIVHSDRGTQYRSNSYVGFLEKHKI  126
             SR +IGWS+   MT QL   A+QMA+  R  + ++IVH+DRG QY S  Y + L +H++
Sbjct  102  WSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNL  161

Query  127  TRSMSRKGNCWDNAVMESFYARLKVELIYAKNYQSIGEARSGIFGYIEVFYNRKRRHSAN  186
              SMS KG C DNA +ESF+  LKVE I +  + S    R+ +F YIE  YNR RRHSA 
Sbjct  162  RGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATVFNYIECDYNRWRRHSAC  221

Query  187  DGLSPVDFEENA  198
            +GLSP +FE++ 
Sbjct  222  GGLSPEQFENHN  233

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  129 bits (472),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 78/168 (47%), Positives = 116/168 (70%), Gaps = 1/168 (0%)

Query  66   NHTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM  125
            ++T AP A NQ W +D+TY+ T+EGWLYLA + D+ +  ++G +M+ RMT +L+  AL M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  126  ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKN  185
            AL+ +R P ++I H+DRG+QYC+ DY+ +  +  L+ SMS KG CYDNA +ESF  +LK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  186  ESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKHH  233
            E +   RF++R+   + + +YIE  YNR RRHS  G +SP  F E+H+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQF-ENHN  233

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  129 bits (471),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 78/171 (46%), Positives = 117/171 (69%), Gaps = 2/171 (1%)

Query  66   NQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM  125
            ++T AP A NQ W +D+TY+ T+EGWLYLA + D+ +  ++G +M+ RMT +L+  AL M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  126  ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKN  185
            AL+ +R P ++I H+DRG+QYC+ DY+ +  +  L+ SMS KG CYDNA +ESF  +LK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  186  ESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFRKKHHQMA  236
            E +   RF++R+   + + +YIE  YNR RRHS  G +SP  F   +H++A
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQF--ENHNLA  235

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  128 bits (470),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 78/168 (47%), Positives = 116/168 (70%), Gaps = 1/168 (0%)

Query  66   NQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM  125
            ++T AP A NQ W +D+TY+ T+EGWLYLA + D+ +  ++G +M+ RMT +L+  AL M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  126  ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKN  185
            AL+ +R P ++I H+DRG+QYC+ DY+ +  +  L+ SMS KG CYDNA +ESF  +LK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  186  ESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKHH  233
            E +   RF++R+   + + +YIE  YNR RRHS  G +SP  F E+H+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQF-ENHN  233

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  128 bits (467),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 91/227 (41%), Positives = 139/227 (62%), Gaps = 11/227 (4%)

Query  43   KLHDDLRDAGETC-----SENRVARLASLAGVTAQIGYKRRPARYGGKPAVVADNTL---  94
             +++ LR++++T      ++ R + L +L+      G  R+PA  ++++A V        
Sbjct  4    SIRHSLRQSSDTVLPALLTNCRSSILKPLPPACVVRGCGRKPAGSSARSATVHMACPYWR  63

Query  95   ---DRQFEVDMTALVWVTDITYIKTHEGWSYLAVVIDLFSRRVVGWSMQSRMTTDLALQA  151
                R          W  DITY++T+EGW YLAVVIDL SR V+GWSM +RMT++LA +A
Sbjct  64   ICWSRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDA  123

Query  152  LLSAVWRRKPKTKVMVHSGQGSQFTSKEWQSFLSKHNLDASMSRRGNCHDNAVAESFFQl  211
            L  A+WRR+    V+VH+++G+Q+ S + Q+ L +HNL +SMS +G C DNA  ESFF+ 
Sbjct  124  LQMALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHS  183

Query  212  lkrerirrrtyltrDAARQDVFDYIEMFYNPNRKHTNNGMLSPVNYE  258
            LK E I+   + +R+  R  VF+YIE  YN  R+H+  G LSP ++E
Sbjct  184  LKVECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFE  230

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  125 bits (456),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 90/209 (44%), Positives = 127/209 (61%), Gaps = 6/209 (2%)

Query  82   RVARLTRLAGIKAQIGYKRRPGIHGGRPSVVIDNT------LDRQFDVTAPDTTWVTDIT  135
            R + L  L+      G  R+P+  ++R++ V            R     A +  W  DIT
Sbjct  25   RSSILKPLPPACVVRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDIT  84

Query  136  YIRTCEGFAYLAVVIDLYSRRVIGWAMQSRQTTDVVLQALLMAVWRRKPKEKVLIHSDQG  195
            Y+RT EG  YLAVVIDL SR VIGW+M +R T+++  +AL MA+WRR+  E V++H+D+G
Sbjct  85   YLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRG  144

Query  196  SQFTSMDWAAFLRHHNLVHSMSRRGNCHDNAVAESFFNLLKrerirrrvyrsrDEARQDV  255
            +Q+ S D  A L++HNL  SMS +G C DNA  ESFF+ LK E I+   + SR+  R  V
Sbjct  145  GQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATV  204

Query  256  FDYIEMFYNPKRKHVRNGMLSPVEFEKQQ  284
            F+YIE  YN  R+H   G LSP +FE+++
Sbjct  205  FNYIECDYNRWRRHSACGGLSPEQFENHN  233

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 90/209 (44%), Positives = 127/209 (61%), Gaps = 6/209 (2%)

Query  82   RVARLTRLAGIKAQIGYKRRPGIHGGRPSVVIDNT------LDRQFDVTAPDTTWVTDIT  135
            R + L  L+      G  R+P+  ++R++ V            R     A +  W  DIT
Sbjct  25   RSSILKPLPPACVVRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDIT  84

Query  136  YIRTCEGFAYLAVVIDLYSRRVIGWAMQSRQTTDVVLQALLMAVWRRKPKEKVLIHSDQG  195
            Y+RT EG  YLAVVIDL SR VIGW+M +R T+++  +AL MA+WRR+  E V++H+D+G
Sbjct  85   YLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRG  144

Query  196  SQFTSMDWAAFLRHHNLVHSMSRRGNCHDNAVAESFFNLLKrerirrrvyrsrDEARQDV  255
            +Q+ S D  A L++HNL  SMS +G C DNA  ESFF+ LK E I+   + SR+  R  V
Sbjct  145  GQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATV  204

Query  256  FDYIEMFYNPKRKHVRNGMLSPVEFEKQQ  284
            F+YIE  YN  R+H   G LSP +FE+++
Sbjct  205  FNYIECDYNRWRRHSACGGLSPEQFENHN  233

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 95/226 (43%), Positives = 137/226 (61%), Gaps = 8/226 (3%)

Query  65   RKLHDDLLDQGETSCANRIARLAKLAGIKAQIGYKRRPGSYGGKPSVVVDNTL------A  118
            R+  D +L    T+C + I  L  L+      G  R+P++ +++++ V           +
Sbjct  10   RQSSDTVLPALLTNCRSSI--LKPLPPACVVRGCGRKPAGSSARSATVHMACPYWRICWS  67

Query  119  RQFDVEAPDRAWVTDITYIRTQEGFAYLAVVIDLFSRRVIGWSLQSRQTTDVVLQALLMA  178
            R     A ++ W  DITY+RT+EG  YLAVVIDL SR VIGWS+ +R T+++  +AL MA
Sbjct  68   RTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMA  127

Query  179  VWRRKPKSRVLVHSDQGSQFTSMDWAAFLKHHNLEHSMSRRGNCHDNAVAESFFNLLKre  238
            +WRR+    V+VH+D+G+Q+ S D  A LK+HNL  SMS +G C DNA  ESFF+ LK E
Sbjct  128  LWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVE  187

Query  239  rirrrtyrtreearQDVFDYIEMFYNPKRKHVRNGMLSPVEFERQH  284
             I+   + +RE  R  VF+YIE  YN  R+H   G LSP +FE ++
Sbjct  188  CIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENHN  233

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 95/226 (43%), Positives = 137/226 (61%), Gaps = 8/226 (3%)

Query  65   RKLHDDLLDQGETSCANRIARLAKLAGIKAQIGYKRRPGSYGGKPSVVVDNTL------A  118
            R+  D +L    T+C + I  L  L+      G  R+P++ +++++ V           +
Sbjct  10   RQSSDTVLPALLTNCRSSI--LKPLPPACVVRGCGRKPAGSSARSATVHMACPYWRICWS  67

Query  119  RQFDVEAPDRAWVTDITYIRTQEGFAYLAVVIDLFSRRVIGWSLQSRQTTDVVLQALLMA  178
            R     A ++ W  DITY+RT+EG  YLAVVIDL SR VIGWS+ +R T+++  +AL MA
Sbjct  68   RTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMA  127

Query  179  VWRRKPKSRVLVHSDQGSQFTSMDWAAFLKHHNLEHSMSRRGNCHDNAVAESFFNLLKre  238
            +WRR+    V+VH+D+G+Q+ S D  A LK+HNL  SMS +G C DNA  ESFF+ LK E
Sbjct  128  LWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVE  187

Query  239  rirrrtyrtreearQDVFDYIEMFYNPKRKHVRNGMLSPVEFERQH  284
             I+   + +RE  R  VF+YIE  YN  R+H   G LSP +FE ++
Sbjct  188  CIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENHN  233

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  121 bits (442),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 89/209 (43%), Positives = 127/209 (61%), Gaps = 6/209 (2%)

Query  82   RVARLAQLAGIKAEIGYKRRPGSYGGKPSVVVDNT------LDRQFDVDAPDRVWVIDIT  135
            R + L  L+      G  R+P++ +++++ V            R     A ++ W  DIT
Sbjct  25   RSSILKPLPPACVVRGCGRKPAGSSARSATVHMACPYWRICWSRTSAPVARNQKWAGDIT  84

Query  136  YIRTQEGFAYLAVVIDLYSRRVIGWSMQSRQTTDVVLQALLMAVWRRKPKGKVLIHSDQG  195
            Y+RT+EG  YLAVVIDL SR VIGWSM +R T+++  +AL MA+WRR+    V++H+D+G
Sbjct  85   YLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRRRPESVIVHTDRG  144

Query  196  SQFTSMDWAAFLSAHNLEHSMSRRGNCHDNAVAESFFNLLKrerirrrtyrtredarQDV  255
            +Q+ S D  A L  HNL  SMS +G C DNA  ESFF+ LK E I+   + +RE  R  V
Sbjct  145  GQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECIHGERFSSREIMRATV  204

Query  256  FDYIEMFYNPKRKHARNGMLSPAEFERQQ  284
            F+YIE  YN  R+H+  G LSP +FE ++
Sbjct  205  FNYIECDYNRWRRHSACGGLSPEQFENHN  233

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  120 bits (437),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 71/166 (43%), Positives = 113/166 (69%), Gaps = 0/166 (0%)

Query  60   NRQFNPEQLNTHWSGDITYIRTGQGWLYLAVIVDLCSRKIVSWAFSDKPNSELTVRALRL  119
            +R   P   N  W+GDITY+RT++GWLYLAV++DL SR +++W+ S +  ++L+  AL++
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  120  AVNKRQPNTGVIFHSDQGAQYTSETFQCCLRELGLQSSMSRAGNCLDNAVTERFFRSLKS  179
            A+ +R+   +VI H+D+G+QY S  +Q  L+   L++SMS  G C DNA  E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  180  ERVNYRRYQTRHQAQADIIDYIEPFYNQKRRHYKLGNISPVQYEMQ  225
            E ++  R+ +R+  +A +++YIE  YN+ RRH   G +SP Q+E +
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  110 bits (401),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 71/165 (44%), Positives = 106/165 (65%), Gaps = 1/165 (0%)

Query  43   RKFHPNEQNRIWVSDVTFIRTSFGWSYLCVILDLYSRKTVGWSLSNRNDSQLVCDTVLKA  102
            R   P  +N+ W +D+T++RT  GW YL V++DL SR  +GWS+S R  +QL CD++  A
Sbjct  68   RTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMA  127

Query  103  VLSRNPRKGLIFHSDRGSNFCSKETRRLLIANGIRRSNSRKGNCWDNAVAESFFSSLKRE  162
            +  R    ++I H+DRG+++CS + + +L  + +R S S KG C DNA  ESFF SLK E
Sbjct  128  LWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVE  187

Query  163  -IEYNTFYNIEEAEHLLFDFIEVYYNRFRFHSTLGYISPEEFETN  206
             I+ + F + E     +F++IE  YNR R HS+ G +SPE+FE +
Sbjct  188  CIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  109 bits (396),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 82/173 (48%), Positives = 115/173 (67%), Gaps = 2/173 (1%)

Query  63   RLAWPFVSP--GRDRVWVADITFVPTRGGWLYLAAILDMHSRHLAGWAMGaradqalasa  120
            R+ W+  S+  +R++ W +DIT++ T  GWLYLA ++D+ SR + GW+M++R    LA  
Sbjct  63   RICWSRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACD  122

Query  121  alemalQRRRPSKGTIHHSDQGSQYTSGAYQRQLQAAGLVASMSRKGMPYDNAVMESFFS  180
            AL+MAL RRR + + I H+D+G+QY SG YQ  L+   L +SMS KG  YDNA +ESFF 
Sbjct  123  ALQMALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFH  182

Query  181  SLKQELTHHEQFVSLDEARAKLFTYIEVFYNRQRLRSALGYRSPVEFERTDVP  233
            SLK E  H E+F S +  RA +F YIE  YNR R +SA G  SP +FE  +++
Sbjct  183  SLKVECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENHNLA  235

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  106 bits (385),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 69/165 (42%), Positives = 106/165 (65%), Gaps = 0/165 (0%)

Query  30   ARRFDPAQRDQVWVGDITFVQTRQGWLYVAVVMDLYARRVVGWAFSQHADTDLALKALRR  89
            +R   P  R+Q W GDIT+++T +GWLY+AVV+DL +R V+GW+ S +  ++LA  AL+ 
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  90   AYDHRRPPPGLMFHSDQGCQYTSTRFLAELRARGTIQSMSRRGNCWDNAVVERFFRSLKN  149
            A  +RR P +++ H+D+G QY S  + A L+ +    SMS +G C DNA VE FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  150  EWIGDQLYVDHRHAEQDITDYLVDFYNHRRLHSAAKGLPPARFEA  194
            E I ++ +  +      + +Y+   YN++R HSA  GL+P +FE 
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFEN  231

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  106 bits (385),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 69/165 (42%), Positives = 106/165 (65%), Gaps = 0/165 (0%)

Query  30   ARRFDPAQRDQVWVGDITFVQTRQGWLYVAVVMDLYARRVVGWAFSQHADTDLALKALRR  89
            +R   P  R+Q W GDIT+++T +GWLY+AVV+DL +R V+GW+ S +  ++LA  AL+ 
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  90   AYDHRRPPPGLMFHSDQGCQYTSTRFLAELRARGTIQSMSRRGNCWDNAVVERFFRSLKN  149
            A  +RR P +++ H+D+G QY S  + A L+ +    SMS +G C DNA VE FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  150  EWIGDQLYVDHRHAEQDITDYLVDFYNHRRLHSAAKGLPPARFEA  194
            E I ++ +  +      + +Y+   YN++R HSA  GL+P +FE 
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFEN  231

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  106 bits (385),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 69/165 (42%), Positives = 106/165 (65%), Gaps = 0/165 (0%)

Query  30   ARRFDPAQRDQVWVGDITFVQTRQGWLYVAVVMDLYARRVVGWAFSQHADTDLALKALRR  89
            +R   P  R+Q W GDIT+++T +GWLY+AVV+DL +R V+GW+ S +  ++LA  AL+ 
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  90   AYDHRRPPPGLMFHSDQGCQYTSTRFLAELRARGTIQSMSRRGNCWDNAVVERFFRSLKN  149
            A  +RR P +++ H+D+G QY S  + A L+ +    SMS +G C DNA VE FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  150  EWIGDQLYVDHRHAEQDITDYLVDFYNHRRLHSAAKGLPPARFEA  194
            E I ++ +  +      + +Y+   YN++R HSA  GL+P +FE 
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFEN  231

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  106 bits (385),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 69/165 (42%), Positives = 106/165 (65%), Gaps = 0/165 (0%)

Query  30   ARRFDPAQRDQVWVGDITFVQTRQGWLYVAVVMDLYARRVVGWAFSQHADTDLALKALRR  89
            +R   P  R+Q W GDIT+++T +GWLY+AVV+DL +R V+GW+ S +  ++LA  AL+ 
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  90   AYDHRRPPPGLMFHSDQGCQYTSTRFLAELRARGTIQSMSRRGNCWDNAVVERFFRSLKN  149
            A  +RR P +++ H+D+G QY S  + A L+ +    SMS +G C DNA VE FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  150  EWIGDQLYVDHRHAEQDITDYLVDFYNHRRLHSAAKGLPPARFEA  194
            E I ++ +  +      + +Y+   YN++R HSA  GL+P +FE 
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFEN  231

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  104 bits (378),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 68/165 (42%), Positives = 105/165 (64%), Gaps = 0/165 (0%)

Query  30   ARRFDPAQRDQVWVGDITFVQTRQGWLYVAVVMDLYARRVVGWAFSQHADTDLALKALRR  89
            +R   P  R+Q W GDIT+++T +GWLY+AVV+DL +R V+GW+ S +  ++LA  AL+ 
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  90   AYDHRRPPPGLMFHSDQGCQYTSTRFLAELRARGTIQSMSRRGNCWDNAVVERFFRSLEN  149
            A  +RR P +++ H+D+G QY S  + A L+ +    SMS +G C DNA VE FF+SL  
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  150  EWIGDQLYVDHRHAEQDITDYLVDFYNHRRLHSAAKGLPPARFEA  194
            E I ++ +  +      + +Y+   YN++R HSA  GL+P +FE 
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFEN  231

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 67/166 (41%), Positives = 107/166 (65%), Gaps = 0/166 (0%)

Query  48   ERQFAVPEPDRVWCGDITYIWAGNRWCYLAVVMDLFARRVIGWSLSANADTALISSALRM  107
             R  A    ++ W GDITY+++++ W YLAVV+DL +R VIGWS+S+   + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  108  AYEVRGQPRDVMFHSDQGSQYTGLKYQQLLWRYRIKQSVSRRGNCWDNSPMERFFRSLKT  167
            A   R +P  V+ H+D+G+QY +  YQ +L R  ++ S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  168  EWVPTDGYTGKDVARQQISSYILNYYNSVRPHHYNGGLTPEESENR  213
            E +  + ++++++ R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 67/166 (41%), Positives = 107/166 (65%), Gaps = 0/166 (0%)

Query  48   ERQFAVPEPDRVWCGDITYIWAGNRWCYLAVVMDLFARRVIGWSLSANADTALISSALRM  107
             R  A    ++ W GDITY+++++ W YLAVV+DL +R VIGWS+S+   + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  108  AYEVRGQPRDVMFHSDQGSQYTGLKYQQLLWRYRIKQSVSRRGNCWDNSPMERFFRSLKT  167
            A   R +P  V+ H+D+G+QY +  YQ +L R  ++ S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  168  EWVPTDGYTGKDVARQQISSYILNYYNSVRPHHYNGGLTPEESENR  213
            E +  + ++++++ R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  101 bits (367),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 67/166 (41%), Positives = 107/166 (65%), Gaps = 0/166 (0%)

Query  40   ERQFAVPEPDRVWCGDITYIWAGNRWCYLAVVMDLFARRVIGWSLSANADTALISSALRM  99
             R  A    ++ W GDITY+++++ W YLAVV+DL +R VIGWS+S+   + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  100  AYEVRGQPRDVMFHSDQGSQYTGLKYQQLLWRYRIKQSVSRRGNCWDNSPMERFFRSLKT  159
            A   R +P  V+ H+D+G+QY +  YQ +L R  ++ S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  160  EWVPTDGYTGKDVARQQISSYILNYYNSVRPHHYNGGLTPEESENR  205
            E +  + ++++++ R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  101 bits (367),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 67/166 (41%), Positives = 107/166 (65%), Gaps = 0/166 (0%)

Query  40   ERQFAVPEPDRVWCGDITYIWAGNRWCYLAVVMDLFARRVIGWSLSANADTALISSALRM  99
             R  A    ++ W GDITY+++++ W YLAVV+DL +R VIGWS+S+   + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  100  AYEVRGQPRDVMFHSDQGSQYTGLKYQQLLWRYRIKQSVSRRGNCWDNSPMERFFRSLKT  159
            A   R +P  V+ H+D+G+QY +  YQ +L R  ++ S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  160  EWVPTDGYTGKDVARQQISSYILNYYNSVRPHHYNGGLTPEESENR  205
            E +  + ++++++ R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  101 bits (367),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 67/166 (41%), Positives = 107/166 (65%), Gaps = 0/166 (0%)

Query  40   ERQFAVPEPDRVWCGDITYIWAGNRWCYLAVVMDLFARRVIGWSLSANADTALISSALRM  99
             R  A    ++ W GDITY+++++ W YLAVV+DL +R VIGWS+S+   + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  100  AYEVRGQPRDVMFHSDQGSQYTGLKYQQLLWRYRIKQSVSRRGNCWDNSPMERFFRSLKT  159
            A   R +P  V+ H+D+G+QY +  YQ +L R  ++ S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  160  EWVPTDGYTGKDVARQQISSYILNYYNSVRPHHYNGGLTPEESENR  205
            E +  + ++++++ R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  101 bits (367),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 67/166 (41%), Positives = 107/166 (65%), Gaps = 0/166 (0%)

Query  40   ERQFAVPEPDRVWCGDITYIWAGNRWCYLAVVMDLFARRVIGWSLSANADTALISSALRM  99
             R  A    ++ W GDITY+++++ W YLAVV+DL +R VIGWS+S+   + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  100  AYEVRGQPRDVMFHSDQGSQYTGLKYQQLLWRYRIKQSVSRRGNCWDNSPMERFFRSLKT  159
            A   R +P  V+ H+D+G+QY +  YQ +L R  ++ S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  160  EWVPTDGYTGKDVARQQISSYILNYYNSVRPHHYNGGLTPEESENR  205
            E +  + ++++++ R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  101 bits (367),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 67/166 (41%), Positives = 107/166 (65%), Gaps = 0/166 (0%)

Query  40   ERQFAVPEPDRVWCGDITYIWAGNRWCYLAVVMDLFARRVIGWSLSANADTALISSALRM  99
             R  A    ++ W GDITY+++++ W YLAVV+DL +R VIGWS+S+   + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  100  AYEVRGQPRDVMFHSDQGSQYTGLKYQQLLWRYRIKQSVSRRGNCWDNSPMERFFRSLKT  159
            A   R +P  V+ H+D+G+QY +  YQ +L R  ++ S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  160  EWVPTDGYTGKDVARQQISSYILNYYNSVRPHHYNGGLTPEESENR  205
            E +  + ++++++ R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  101 bits (367),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 67/166 (41%), Positives = 107/166 (65%), Gaps = 0/166 (0%)

Query  40   ERQFAVPEPDRVWCGDITYIWAGNRWCYLAVVMDLFARRVIGWSLSANADTALISSALRM  99
             R  A    ++ W GDITY+++++ W YLAVV+DL +R VIGWS+S+   + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  100  AYEVRGQPRDVMFHSDQGSQYTGLKYQQLLWRYRIKQSVSRRGNCWDNSPMERFFRSLKT  159
            A   R +P  V+ H+D+G+QY +  YQ +L R  ++ S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  160  EWVPTDGYTGKDVARQQISSYILNYYNSVRPHHYNGGLTPEESENR  205
            E +  + ++++++ R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score =  101 bits (367),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 67/166 (41%), Positives = 107/166 (65%), Gaps = 0/166 (0%)

Query  40   ERQFAVPEPDRVWCGDITYIWAGNRWCYLAVVMDLFARRVIGWSLSANADTALISSALRM  99
             R  A    ++ W GDITY+++++ W YLAVV+DL +R VIGWS+S+   + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  100  AYEVRGQPRDVMFHSDQGSQYTGLKYQQLLWRYRIKQSVSRRGNCWDNSPMERFFRSLKT  159
            A   R +P  V+ H+D+G+QY +  YQ +L R  ++ S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  160  EWVPTDGYTGKDVARQQISSYILNYYNSVRPHHYNGGLTPEESENR  205
            E +  + ++++++ R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 99.6 bits (359),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 69/167 (42%), Positives = 105/167 (63%), Gaps = 2/167 (1%)

Query  62   STIGLNQKWTADMTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMATDLVLKTLESAVK  121
            + ++ NQKW++D+TY++T  +GW YL+ ++DL SR +IG S S +M+++L   +L+ A+ 
Sbjct  71   APVARNQKWAGDITYLRTD-EGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALW  129

Query  122  NRTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECV  181
             R     +I+HTD G+QY S+DY+  L   ++R S S KG  YDNA +ESF  SLK EC+
Sbjct  130  RRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKVECI  189

Query  182  YPVPVFEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQVEIATLT  228
                 F   E   A +F+Y++  YNR R HS+ G  +P Q E   L+
Sbjct  190  HGER-FSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENHNLA  235

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 99.4 bits (358),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 68/166 (41%), Positives = 106/166 (64%), Gaps = 0/166 (0%)

Query  48   ERQFAVPEPDRVWCGDITYLWAGNRWCYLAVVMDLFARRVIGWSLSAHADTALISSALRM  107
             R  A    ++ W GDITYL++++ W YLAVV+DL +R VIGWS+S++  + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  108  AYETRGQPRDVVFHSDQGSQYTGLKYQQLLWRCRINQSVSRRGNCWDNSPMERFFRSLKT  167
            A   R +P  V+ H+D+G+QY +  YQ +L R  +  S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  168  EWVPTNGYAGKDEARQQINDYILNYYNSVRPHHYNGGLTPEESENR  213
            E +  + +++++  R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 99.4 bits (358),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 68/166 (41%), Positives = 106/166 (64%), Gaps = 0/166 (0%)

Query  48   ERQFAVPEPDRVWCGDITYLWAGNRWCYLAVVMDLFARRVIGWSLSAHADTALISSALRM  107
             R  A    ++ W GDITYL++++ W YLAVV+DL +R VIGWS+S++  + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  108  AYETRGQPRDVVFHSDQGSQYTGLKYQQLLWRCRINQSVSRRGNCWDNSPMERFFRSLKT  167
            A   R +P  V+ H+D+G+QY +  YQ +L R  +  S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  168  EWVPTNGYAGKDEARQQINDYILNYYNSVRPHHYNGGLTPEESENR  213
            E +  + +++++  R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 99.4 bits (358),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 68/166 (41%), Positives = 106/166 (64%), Gaps = 0/166 (0%)

Query  31   ERQFAVPEPDRVWCGDITYLWAGNRWCYLAVVMDLFARRVIGWSLSAHADTALISSALRM  90
             R  A    ++ W GDITYL++++ W YLAVV+DL +R VIGWS+S++  + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  91   AYETRGQPRDVVFHSDQGSQYTGLKYQQLLWRCRINQSVSRRGNCWDNSPMERFFRSLKT  150
            A   R +P  V+ H+D+G+QY +  YQ +L R  +  S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  151  EWVPTNGYAGKDEARQQINDYILNYYNSVRPHHYNGGLTPEESENR  196
            E +  + +++++  R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 99.4 bits (358),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 68/166 (41%), Positives = 106/166 (64%), Gaps = 0/166 (0%)

Query  40   ERQFAVPEPDRVWCGDITYLWAGNRWCYLAVVMDLFARRVIGWSLSAHADTALISSALRM  99
             R  A    ++ W GDITYL++++ W YLAVV+DL +R VIGWS+S++  + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  100  AYETRGQPRDVVFHSDQGSQYTGLKYQQLLWRCRINQSVSRRGNCWDNSPMERFFRSLKT  159
            A   R +P  V+ H+D+G+QY +  YQ +L R  +  S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  160  EWVPTNGYAGKDEARQQINDYILNYYNSVRPHHYNGGLTPEESENR  205
            E +  + +++++  R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 99.4 bits (358),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 68/166 (41%), Positives = 106/166 (64%), Gaps = 0/166 (0%)

Query  48   ERQFAVPEPDRVWCGDITYLWAGNRWCYLAVVMDLFARRVIGWSLSAHADTALISSALRM  107
             R  A    ++ W GDITYL++++ W YLAVV+DL +R VIGWS+S++  + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  108  AYETRGQPRDVVFHSDQGSQYTGLKYQQLLWRCRINQSVSRRGNCWDNSPMERFFRSLKT  167
            A   R +P  V+ H+D+G+QY +  YQ +L R  +  S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  168  EWVPTNGYAGKDEARQQINDYILNYYNSVRPHHYNGGLTPEESENR  213
            E +  + +++++  R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 99.4 bits (358),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 68/166 (41%), Positives = 106/166 (64%), Gaps = 0/166 (0%)

Query  48   ERQFAVPEPDRVWCGDITYLWAGNRWCYLAVVMDLFARRVIGWSLSAHADTALISSALRM  107
             R  A    ++ W GDITYL++++ W YLAVV+DL +R VIGWS+S++  + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  108  AYETRGQPRDVVFHSDQGSQYTGLKYQQLLWRCRINQSVSRRGNCWDNSPMERFFRSLKT  167
            A   R +P  V+ H+D+G+QY +  YQ +L R  +  S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  168  EWVPTNGYAGKDEARQQINDYILNYYNSVRPHHYNGGLTPEESENR  213
            E +  + +++++  R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 98.9 bits (356),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 68/166 (41%), Positives = 106/166 (64%), Gaps = 0/166 (0%)

Query  48   ERQFAVPEPDRVWCGDITYLWAGNRWCYLAVVMDLFARRVIGWSLSAHADTALISSALRM  107
             R  A    ++ W GDITYL++++ W YLAVV+DL +R VIGWS+S++  + L   AL+M
Sbjct  67   SRTSAPVARNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  108  AYETRGQPRDVMFHSDQGSQYTGLKYQQLLWRCRINQSVSRRGNCWDNSPMERFFRSLKT  167
            A   R +P  V+ H+D+G+QY +  YQ +L R  +  S+S +G C DN+ +E FF+SLK 
Sbjct  127  ALWRRRRPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLKV  186

Query  168  EWVPTNGYAGKDEARQQINDYILNYYNSVRPHHYNGGLTPEESENR  213
            E +  + +++++  R  + +YI   YN  R H   GGL+PE+ EN+
Sbjct  187  ECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 96.8 bits (348),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 67/167 (41%), Positives = 109/167 (66%), Gaps = 3/167 (1%)

Query  11   KGSSPVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEM  70
            + S+PV+  NQ W GD+TY++T+  W YLAVV+DL +R  +GW+MS    ++L+  AL+M
Sbjct  68   RTSAPVA-RNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  71   A-WETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLK  129
            A W  R +P +V+ H+D+G++Y S +++ +L R ++R SMS +G C DN+ +E FF+SLK
Sbjct  127  ALWRRR-RPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLK  185

Query  130  NEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENR  176
             E +    + S      ++ +YI   Y+  R H   GGL+P++ EN+
Sbjct  186  VECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 96.8 bits (348),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 67/167 (41%), Positives = 109/167 (66%), Gaps = 3/167 (1%)

Query  11   KGSSPVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEM  70
            + S+PV+  NQ W GD+TY++T+  W YLAVV+DL +R  +GW+MS    ++L+  AL+M
Sbjct  68   RTSAPVA-RNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  71   A-WETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLK  129
            A W  R +P +V+ H+D+G++Y S +++ +L R ++R SMS +G C DN+ +E FF+SLK
Sbjct  127  ALWRRR-RPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLK  185

Query  130  NEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENR  176
             E +    + S      ++ +YI   Y+  R H   GGL+P++ EN+
Sbjct  186  VECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 96.8 bits (348),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 67/167 (41%), Positives = 109/167 (66%), Gaps = 3/167 (1%)

Query  11   KGSSPVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEM  70
            + S+PV+  NQ W GD+TY++T+  W YLAVV+DL +R  +GW+MS    ++L+  AL+M
Sbjct  68   RTSAPVA-RNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  71   A-WETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLK  129
            A W  R +P +V+ H+D+G++Y S +++ +L R ++R SMS +G C DN+ +E FF+SLK
Sbjct  127  ALWRRR-RPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLK  185

Query  130  NEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENR  176
             E +    + S      ++ +YI   Y+  R H   GGL+P++ EN+
Sbjct  186  VECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 96.8 bits (348),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 67/167 (41%), Positives = 109/167 (66%), Gaps = 3/167 (1%)

Query  11   KGSSPVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEM  70
            + S+PV+  NQ W GD+TY++T+  W YLAVV+DL +R  +GW+MS    ++L+  AL+M
Sbjct  68   RTSAPVA-RNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  71   A-WETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLK  129
            A W  R +P +V+ H+D+G++Y S +++ +L R ++R SMS +G C DN+ +E FF+SLK
Sbjct  127  ALWRRR-RPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLK  185

Query  130  NEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENR  176
             E +    + S      ++ +YI   Y+  R H   GGL+P++ EN+
Sbjct  186  VECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 96.8 bits (348),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 67/167 (41%), Positives = 109/167 (66%), Gaps = 3/167 (1%)

Query  11   KGSSPVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEM  70
            + S+PV+  NQ W GD+TY++T+  W YLAVV+DL +R  +GW+MS    ++L+  AL+M
Sbjct  68   RTSAPVA-RNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  71   A-WETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLK  129
            A W  R +P +V+ H+D+G++Y S +++ +L R ++R SMS +G C DN+ +E FF+SLK
Sbjct  127  ALWRRR-RPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLK  185

Query  130  NEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENR  176
             E +    + S      ++ +YI   Y+  R H   GGL+P++ EN+
Sbjct  186  VECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 96.8 bits (348),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 67/167 (41%), Positives = 109/167 (66%), Gaps = 3/167 (1%)

Query  11   KGSSPVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEM  70
            + S+PV+  NQ W GD+TY++T+  W YLAVV+DL +R  +GW+MS    ++L+  AL+M
Sbjct  68   RTSAPVA-RNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  71   A-WETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLK  129
            A W  R +P +V+ H+D+G++Y S +++ +L R ++R SMS +G C DN+ +E FF+SLK
Sbjct  127  ALWRRR-RPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLK  185

Query  130  NEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENR  176
             E +    + S      ++ +YI   Y+  R H   GGL+P++ EN+
Sbjct  186  VECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232

> AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA
Length=235

 Score = 96.8 bits (348),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 67/167 (41%), Positives = 109/167 (66%), Gaps = 3/167 (1%)

Query  11   KGSSPVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEM  70
            + S+PV+  NQ W GD+TY++T+  W YLAVV+DL +R  +GW+MS    ++L+  AL+M
Sbjct  68   RTSAPVA-RNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQM  126

Query  71   A-WETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLK  129
            A W  R +P +V+ H+D+G++Y S +++ +L R ++R SMS +G C DN+ +E FF+SLK
Sbjct  127  ALWRRR-RPESVIVHTDRGGQYCSGDYQAMLKRHNLRGSMSAKGYCYDNACVESFFHSLK  185

Query  130  NEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENR  176
             E +    + S      ++ +YI   Y+  R H   GGL+P++ EN+
Sbjct  186  VECIHGERFSSREIMRATVFNYIECDYNRWRRHSACGGLSPEQFENH  232