Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of tnpA gene of AF141323

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SF3701
( - )

NC_004337
(Shigella flexneri 301)

0.0

99.9

2) unnamed
( - )

NC_004337
(Shigella flexneri 301)

0.0

99.8

3) unnamed
( - )

NC_004431
(Escherichia coli CFT073)

0.0

4) ECO26_3396
( - )

NC_013361
(Escherichia coli 11368)

0.0

99.2

5) Entcl_0666
( - )

NC_014618
(Enterobacter cloacae SCF1)

e-257

84.3

6) unnamed
( - )

NC_004851
(Shigella flexneri 301)

e-236

84.9

7) D781_1369
( - )

NC_020064
(Serratia marcescens FGI94)

e-206

84.3

8) CFSAN002069_07205
( - )

NC_021812
(Salmonella enterica CFSAN002069)

e-197

82.7

9) SEEB0189_17675
( - )

NC_021844
(Salmonella enterica CFSAN000189)

e-189

81.6

10) SNSL254_A0365
( - )

NC_011080
(Salmonella enterica SL254)

e-162

81.7

11) PAGR_g2474
( - )

NC_017554
(Pantoea ananatis PA13)

e-116

• Sequence Alignments

1) SF3701 in NC_004337


>AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA 
          Length = 708

 Score = 1390 bits (3587), Expect = 0.0
 Identities = 707/708 (100%)
 Strand = Plus / Plus

Query: 149 atgccgctgtccataaggcattctttgaggcaaagcagcgatacggtgctccccgccttg 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgccgctgtccataaggcattctttgaggcaaagcagcgatacggtgctccccgccttg 60

Query: 209 ctgacgaactgccggagttcaatattaaaaccattgccgccagcctgcgtcgtcaggggc 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgacgaactgccggagttcaatattaaaaccattgccgccagcctgcgtcgtcaggggc 120

Query: 269 tgcgggcgaaagccagccggaagttcagcccggtcagctaccgtgcacatggcctgcccg 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcgggcgaaagccagccggaagttcagcccggtcagctaccgtgcacatggcctgcccg 180

Query: 329 tattggagaatctgctggagcaggacttcagcgccagtggcccgaaaccagaagtgggcg 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tattggagaatctgctggagcaggacttcagcgccagtggcccgaaaccagaagtgggcg 240

Query: 389 ggtgacatcacgtacttgcgtaccgatgagggctggttgtatctcgcagtagtcatcgac 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggtgacatcacgtacttgcgtaccgatgagggctggttgtatctcgcagtagtcatcgac 300

Query: 449 ctgtggtcacgcgccgtcattggctggtcgatgtcaccgcgaatgacagcacaactggcc 508
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgtggtcacgcgccgtcattggctggtcgatgtcaccgcgaatgacagcacaactggcc 360

Query: 509 tgtgatgcactgcaaatggcgttgtggcggagaagacgcccggaaagcgtcattgttcat 568
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtgatgcactgcaaatggcgttgtggcggagaagacgcccggaaagcgtcattgttcat 420

Query: 569 acggaccgtggtggtcaatactgttcaggggattatcaggcaatgctgaagcgacacaac 628
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acggaccgtggtggtcagtactgttcaggggattatcaggcaatgctgaagcgacacaac 480

Query: 629 ctgcgtggcagtatgagtgcgaaaggctactgttatgacaatgcctgtgtggaaagcttc 688
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctgcgtggcagtatgagtgcgaaaggctactgttatgacaatgcctgtgtggaaagcttc 540

Query: 689 tttcattcgctgaaggtggaatgtatccacggggaacgctttagcagccgggaaataatg 748
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tttcattcgctgaaggtggaatgtatccacggggaacgctttagcagccgggaaataatg 600

Query: 749 cgggcaacggtgtttaattatatcgagtgtgattacaatcgctggcgtcgtcacagtgcc 808
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cgggcaacggtgtttaattatatcgagtgtgattacaatcgctggcgtcgtcacagtgcc 660

Query: 809 tgtggcggtctcagcccggaacaatttgaaaaccataatctcgcttag 856
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgtggcggtctcagcccggaacaatttgaaaaccataatctcgcttag 708

2) unnamed in NC_004337


>AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA 
          Length = 708

 Score = 1191 bits (3075), Expect = 0.0
 Identities = 606/607 (100%)
 Strand = Plus / Plus

Query: 1   agcctgcgtcgtcaggggctgcgggcgaaagccagccggaagttcagcccggtcagctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 agcctgcgtcgtcaggggctgcgggcgaaagccagccggaagttcagcccggtcagctac 161

Query: 61  cgtgcacatggcctgcccgtattggagaatctgctggagcaggacttcagcgccagtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgtgcacatggcctgcccgtattggagaatctgctggagcaggacttcagcgccagtggc 221

Query: 121 ccgaaaccagaagtgggcgggtgacatcacgtacttgcgtaccgatgagggctggttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ccgaaaccagaagtgggcgggtgacatcacgtacttgcgtaccgatgagggctggttgta 281

Query: 181 tctcgcagtagtcatcgacctgtggtcacgcgccgtcattggctggtcgatgtcaccgcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tctcgcagtagtcatcgacctgtggtcacgcgccgtcattggctggtcgatgtcaccgcg 341

Query: 241 aatgacagcacaactggcctgtgatgcactgcaaatggcgttgtggcggagaagacgccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aatgacagcacaactggcctgtgatgcactgcaaatggcgttgtggcggagaagacgccc 401

Query: 301 ggaaagcgtcattgttcatacggaccgtggtggtcaatactgttcaggggattatcaggc 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 402 ggaaagcgtcattgttcatacggaccgtggtggtcagtactgttcaggggattatcaggc 461

Query: 361 aatgctgaagcgacacaacctgcgtggcagtatgagtgcgaaaggctactgttatgacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aatgctgaagcgacacaacctgcgtggcagtatgagtgcgaaaggctactgttatgacaa 521

Query: 421 tgcctgtgtggaaagcttctttcattcgctgaaggtggaatgtatccacggggaacgctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgcctgtgtggaaagcttctttcattcgctgaaggtggaatgtatccacggggaacgctt 581

Query: 481 tagcagccgggaaataatgcgggcaacggtgtttaattatatcgagtgtgattacaatcg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tagcagccgggaaataatgcgggcaacggtgtttaattatatcgagtgtgattacaatcg 641

Query: 541 ctggcgtcgtcacagtgcctgtggcggtctcagcccggaacaatttgaaaaccataatct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ctggcgtcgtcacagtgcctgtggcggtctcagcccggaacaatttgaaaaccataatct 701

Query: 601 cgcttag 607
           |||||||
Sbjct: 702 cgcttag 708

3) unnamed in NC_004431


>AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA 
          Length = 708

 Score = 1132 bits (2922), Expect = 0.0
 Identities = 587/595 (99%)
 Strand = Plus / Plus

Query: 1   agcctgcgtcgtcaggggctgcgggcgaaagccagccggaagttcagcccggtcagctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 agcctgcgtcgtcaggggctgcgggcgaaagccagccggaagttcagcccggtcagctac 161

Query: 61  cgtgcacatggcctgcccgtattggagaatctgctggagcaggacttcagcgccagcggc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 162 cgtgcacatggcctgcccgtattggagaatctgctggagcaggacttcagcgccagtggc 221

Query: 121 ccg-aaccagaagtgggcgggtgacatcacgtacttgcgtaccgatgagggctggttgta 179
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ccgaaaccagaagtgggcgggtgacatcacgtacttgcgtaccgatgagggctggttgta 281

Query: 180 tctcgcagtagtcatcgacctgtggtcacgcgccgtcattggctggtcgatgtcactgcg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 282 tctcgcagtagtcatcgacctgtggtcacgcgccgtcattggctggtcgatgtcaccgcg 341

Query: 240 aatgacagcacaactggcctgtgatgcactgcaaatggcgttgtggcggagaagacgccc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aatgacagcacaactggcctgtgatgcactgcaaatggcgttgtggcggagaagacgccc 401

Query: 300 ggaaagcgtcattgttcatacggaccgtggtggtcaatactgttcaggggattatcaggc 359
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 402 ggaaagcgtcattgttcatacggaccgtggtggtcagtactgttcaggggattatcaggc 461

Query: 360 gctgctgaagctgacacaacctgcgtggcagtatgagtgcgaaaggctactgttatgaca 419
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aatgctgaagc-gacacaacctgcgtggcagtatgagtgcgaaaggctactgttatgaca 520

Query: 420 atgcctgtgtggaaagcttctttcattcgctgaaggtggaatatatccacggggaacgct 479
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 521 atgcctgtgtggaaagcttctttcattcgctgaaggtggaatgtatccacggggaacgct 580

Query: 480 ttagcagccgggaaataatgcgggcaacggtgtttaattatatcgagtgtgattacaatc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttagcagccgggaaataatgcgggcaacggtgtttaattatatcgagtgtgattacaatc 640

Query: 540 gctggcgtcgtcacagtgcctgtggcggtctcagcccggaacaatttgaaaacca 594
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gctggcgtcgtcacagtgcctgtggcggtctcagcccggaacaatttgaaaacca 695

4) ECO26_3396 in NC_013361


>AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA 
          Length = 708

 Score = 1085 bits (2800), Expect = 0.0
 Identities = 560/566 (99%)
 Strand = Plus / Plus

Query: 39  gttcagcccggtcagctaccgtgcacatggcctgcccgtattggagaatctgctggagca 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gttcagcccggtcagctaccgtgcacatggcctgcccgtattggagaatctgctggagca 202

Query: 99  ggacttcagcgccagaggcccg-aaccagaagtgggcgggtgacatcacgtacttgcgta 157
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggacttcagcgccagtggcccgaaaccagaagtgggcgggtgacatcacgtacttgcgta 262

Query: 158 ccgatgagggctggttgtatctcgcagtagtcatcgacctgtggtcacgcgccgtcattg 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccgatgagggctggttgtatctcgcagtagtcatcgacctgtggtcacgcgccgtcattg 322

Query: 218 gctggtcgatgtcaccgcgaatgacagcacaactggcctgtgatgcactacaaatggcgt 277
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 323 gctggtcgatgtcaccgcgaatgacagcacaactggcctgtgatgcactgcaaatggcgt 382

Query: 278 tgtggcggagaagacgcccggaaagcgtcattgttcatacggaccgtggtggtcaatact 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 383 tgtggcggagaagacgcccggaaagcgtcattgttcatacggaccgtggtggtcagtact 442

Query: 338 gttcaggggattatcaggcgctgctgaagcgacacaacctgcgtggcagtatgagtgcga 397
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gttcaggggattatcaggcaatgctgaagcgacacaacctgcgtggcagtatgagtgcga 502

Query: 398 aaggctactgttatgacaatgcctgtgtggaaagcttctttcattcgctgaaggtggaat 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaggctactgttatgacaatgcctgtgtggaaagcttctttcattcgctgaaggtggaat 562

Query: 458 gtatccacggggaacgctttagcagccgggaaataatgcgggcaacggtgtttaattata 517
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtatccacggggaacgctttagcagccgggaaataatgcgggcaacggtgtttaattata 622

Query: 518 tcgagtgtgattacaatcgctggcgtcgtcacagtgcctgtggcggtctcagcccggaac 577
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcgagtgtgattacaatcgctggcgtcgtcacagtgcctgtggcggtctcagcccggaac 682

Query: 578 aatttgaaaaccataatctcgcttag 603
           ||||||||||||||||||||||||||
Sbjct: 683 aatttgaaaaccataatctcgcttag 708


 Score = 76 bits (196), Expect = 4e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

Query: 1   ttgccgccagcctgcgtcgtcaggggctgcgggcgaaa 38
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ttgccgccagcctgcgtcgtcaggggctgcgggcgaaa 131

5) Entcl_0666 in NC_014618


>AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA 
          Length = 708

 Score = 885 bits (2284), Expect = e-257
 Identities = 510/606 (84%)
 Strand = Plus / Plus

Query: 98  gcctgcgtcgtcagggagtgcgggcgaaagcggcccgcaagttcagtccggtcagttact 157
           ||||||||||||||||  |||||||||||||   ||| |||||||| |||||||| ||| 
Sbjct: 103 gcctgcgtcgtcaggggctgcgggcgaaagccagccggaagttcagcccggtcagctacc 162

Query: 158 gtgagcacggcttgcccgtgtcagagaacctgctgaaacaggatttttacgccagtggcc 217
           |||  || ||| ||||||| |  ||||| |||||| | ||||| ||   |||||||||||
Sbjct: 163 gtgcacatggcctgcccgtattggagaatctgctggagcaggacttcagcgccagtggcc 222

Query: 218 c-aaaccagaagtgggcaggtgatatcacctacttacgtacagatgaaggttggttatac 276
           | ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || ||||| || 
Sbjct: 223 cgaaaccagaagtgggcgggtgacatcacgtacttgcgtaccgatgagggctggttgtat 282

Query: 277 ctggcggtggtcatagatctgtggtcgcgtgctgtcatcggctggtcaatgtcgtcgcgt 336
           || || || ||||| || |||||||| || || ||||| |||||||| |||||  |||| 
Sbjct: 283 ctcgcagtagtcatcgacctgtggtcacgcgccgtcattggctggtcgatgtcaccgcga 342

Query: 337 atgacagcacaacttgtctgcgatgcactgcaaatggcgctctgacggcgtaaacgtccg 396
           |||||||||||||| | ||| |||||||||||||||||| | || ||| | | ||| |||
Sbjct: 343 atgacagcacaactggcctgtgatgcactgcaaatggcgttgtggcggagaagacgcccg 402

Query: 397 gaaaatgtcattgttcacacggaccgcagtggtcagtactgttcagcggattataagacg 456
           ||||  ||||||||||| ||||||||  |||||||||||||||||| ||||||| || | 
Sbjct: 403 gaaagcgtcattgttcatacggaccgtggtggtcagtactgttcaggggattatcaggca 462

Query: 457 ttactgaaacgccataatctgcgggggagcatgagcgcaaaaggttgctgttatgacaat 516
            | ||||| || || || ||||| || || ||||| || ||||| | |||||||||||||
Sbjct: 463 atgctgaagcgacacaacctgcgtggcagtatgagtgcgaaaggctactgttatgacaat 522

Query: 517 gcctgtgtggaaagcttctttcattcgctgaaagtggaatgtattcacggagaacacttt 576
           |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||
Sbjct: 523 gcctgtgtggaaagcttctttcattcgctgaaggtggaatgtatccacggggaacgcttt 582

Query: 577 accagcagagaaataatgcggacgacggtgtttaattatattgagtgtgactacaatcgc 636
           | |||| | |||||||||||| | ||||||||||||||||| |||||||| |||||||||
Sbjct: 583 agcagccgggaaataatgcgggcaacggtgtttaattatatcgagtgtgattacaatcgc 642

Query: 637 tggcgtcgccacagtgcgtgcggcggtctaagcccggagcaatttgaaaaccagaacctc 696
           |||||||| |||||||| || |||||||| |||||||| |||||||||||||| || |||
Sbjct: 643 tggcgtcgtcacagtgcctgtggcggtctcagcccggaacaatttgaaaaccataatctc 702

Query: 697 gcttag 702
           ||||||
Sbjct: 703 gcttag 708

6) unnamed in NC_004851


>AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA 
          Length = 708

 Score = 815 bits (2104), Expect = e-236
 Identities = 473/558 (85%)
 Strand = Plus / Plus

Query: 1   cggtcagttaccgcgcacatggcctgcctgtgtcagaaaatctgctggagcaggattttt 60
           ||||||| ||||| |||||||||||||| || |  || ||||||||||||||||| ||  
Sbjct: 151 cggtcagctaccgtgcacatggcctgcccgtattggagaatctgctggagcaggacttca 210

Query: 61  acgccagtggtccg-aaccagaagtgggcgggagacatcacgtacttacgtacagatgaa 119
            ||||||||| ||| ||||||||||||||||| |||||||||||||| ||||| ||||| 
Sbjct: 211 gcgccagtggcccgaaaccagaagtgggcgggtgacatcacgtacttgcgtaccgatgag 270

Query: 120 ggctggctgtatctggctgtggtcattgacctgtggtcacgtgccgttattggctggtcc 179
           |||||| ||||||| || || ||||| |||||||||||||| ||||| ||||||||||| 
Sbjct: 271 ggctggttgtatctcgcagtagtcatcgacctgtggtcacgcgccgtcattggctggtcg 330

Query: 180 atgtcaccacgcctgacggcgcaactggcctgcgatgccctgcagatggcgctgtggcgg 239
           |||||||| ||  |||| || ||||||||||| ||||| ||||| |||||| ||||||||
Sbjct: 331 atgtcaccgcgaatgacagcacaactggcctgtgatgcactgcaaatggcgttgtggcgg 390

Query: 240 cgtaagagaccccggaacgttatcgttcactcggaccgaggaagtcagtactgttcagca 299
            | |   | ||    | ||| || |||||  ||||||| ||  |||||||||||||||  
Sbjct: 391 agaagacgcccggaaagcgtcattgttcatacggaccgtggtggtcagtactgttcaggg 450

Query: 300 gattatcaggcgctgctgaagtggcataatctgcgtggcagtatgagcgcaaagggctgc 359
           |||||||||||  |||||||| | || || ||||||||||||||||| || || |||| |
Sbjct: 451 gattatcaggcaatgctgaagcgacacaacctgcgtggcagtatgagtgcgaaaggctac 510

Query: 360 tgctacgataatgcctgcgtggaaagcttctttcattcgctgaaagtggaatgtctccac 419
           || || || |||||||| |||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 511 tgttatgacaatgcctgtgtggaaagcttctttcattcgctgaaggtggaatgtatccac 570

Query: 420 ggagaacactttatcagccgggaaataatgagggcaacagtgtttaattatatcgaatgt 479
           || |||| ||||| |||||||||||||||| ||||||| ||||||||||||||||| |||
Sbjct: 571 ggggaacgctttagcagccgggaaataatgcgggcaacggtgtttaattatatcgagtgt 630

Query: 480 gattacaatcgctggcgacggcacagttggtgtggcggcctcagtccggaacaatttgaa 539
           ||||||||||||||||| || ||||||   |||||||| ||||| |||||||||||||||
Sbjct: 631 gattacaatcgctggcgtcgtcacagtgcctgtggcggtctcagcccggaacaatttgaa 690

Query: 540 aaccagaacctcgcttag 557
           ||||| || |||||||||
Sbjct: 691 aaccataatctcgcttag 708

7) D781_1369 in NC_020064


>AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA 
          Length = 708

 Score = 713 bits (1840), Expect = e-206
 Identities = 405/480 (84%)
 Strand = Plus / Plus

Query: 88  cagaagtgggtgggtgacatcacgtatctgcgcaccggtgaaggctggctgtatctggcg 147
           |||||||||| |||||||||||||||  |||| |||| ||| |||||| ||||||| || 
Sbjct: 229 cagaagtgggcgggtgacatcacgtacttgcgtaccgatgagggctggttgtatctcgca 288

Query: 148 gtggtgattgacctgtggtcgcggtcagtcattggctggtcgatgtcgtcacggatgacg 207
           || || || ||||||||||| ||  | ||||||||||||||||||||  | || ||||| 
Sbjct: 289 gtagtcatcgacctgtggtcacgcgccgtcattggctggtcgatgtcaccgcgaatgaca 348

Query: 208 gcacagcttgcctgcgatgcactgcagatggcgttatggcggcgtaaacgcccggaaaat 267
           ||||| || ||||| ||||||||||| |||||||| |||||| | | |||||||||||  
Sbjct: 349 gcacaactggcctgtgatgcactgcaaatggcgttgtggcggagaagacgcccggaaagc 408

Query: 268 gtcatcgtgcacacagaccgaggtggtcagtactgttcaacggattaccagagcttactg 327
           ||||| || || || ||||| ||||||||||||||||||  |||||| |||    | |||
Sbjct: 409 gtcattgttcatacggaccgtggtggtcagtactgttcaggggattatcaggcaatgctg 468

Query: 328 aaacggcataatctgcagggcagtatgagcgctaagggctgttgttacgacaatgcctgt 387
           || || || || ||||  ||||||||||| || || ||||  ||||| ||||||||||||
Sbjct: 469 aagcgacacaacctgcgtggcagtatgagtgcgaaaggctactgttatgacaatgcctgt 528

Query: 388 gcagaaagcttctttcactcactgaaggtggaatgtatccacggggaggactttgccagc 447
           |  |||||||||||||| || ||||||||||||||||||||||||||   ||||  ||||
Sbjct: 529 gtggaaagcttctttcattcgctgaaggtggaatgtatccacggggaacgctttagcagc 588

Query: 448 cgggaaataatgcgaacggcagtgtttaattatatcgagtgcgattacaatcgctggcgt 507
           ||||||||||||||  |  | |||||||||||||||||||| ||||||||||||||||||
Sbjct: 589 cgggaaataatgcgggcaacggtgtttaattatatcgagtgtgattacaatcgctggcgt 648

Query: 508 cgtcacagtgcctgtggcggtcttagcccggaacagtttgaaaaccaaaacctcgcttag 567
           ||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||
Sbjct: 649 cgtcacagtgcctgtggcggtctcagcccggaacaatttgaaaaccataatctcgcttag 708


 Score = 61 bits (157), Expect = 2e-09
 Identities = 34/41 (83%)
 Strand = Plus / Plus

Query: 46  gagaatctgttgaagtaggacttttacgccagcggcccgaa 86
           ||||||||| || || |||||||   |||||| ||||||||
Sbjct: 186 gagaatctgctggagcaggacttcagcgccagtggcccgaa 226

8) CFSAN002069_07205 in NC_021812


>AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA 
          Length = 708

 Score = 685 bits (1769), Expect = e-197
 Identities = 399/480 (83%)
 Strand = Plus / Plus

Query: 145 cagaagtgggtgggtgacatcacgtatcttcgcactggtgaaggctggctttatctggcc 204
           |||||||||| |||||||||||||||  | || || | ||| |||||| | ||||| || 
Sbjct: 229 cagaagtgggcgggtgacatcacgtacttgcgtaccgatgagggctggttgtatctcgca 288

Query: 205 gtggttatcgatctgtggtcgcggtcagtcattggctggtcaatgtcatcacggatgacg 264
           || || ||||| |||||||| ||  | |||||||||||||| |||||| | || ||||| 
Sbjct: 289 gtagtcatcgacctgtggtcacgcgccgtcattggctggtcgatgtcaccgcgaatgaca 348

Query: 265 gcacagctggcctgcgatgcgctacagatggcgttgtggcggcgtaagcgcccggaaaat 324
           ||||| |||||||| ||||| || || ||||||||||||||| | |  ||||||||||  
Sbjct: 349 gcacaactggcctgtgatgcactgcaaatggcgttgtggcggagaagacgcccggaaagc 408

Query: 325 gtcatcgtgcatacagacagaggcggtcagtactgttcaacggattaccagaacttactg 384
           ||||| || ||||| ||| | || |||||||||||||||  |||||| |||    | |||
Sbjct: 409 gtcattgttcatacggaccgtggtggtcagtactgttcaggggattatcaggcaatgctg 468

Query: 385 aaacgccataatctgcggggaagtatgagcgccagaggttgttgttacgacaatgcctgt 444
           || || || || ||||| || |||||||| || | ||| |  ||||| ||||||||||||
Sbjct: 469 aagcgacacaacctgcgtggcagtatgagtgcgaaaggctactgttatgacaatgcctgt 528

Query: 445 gcggaaagcttcttccatacgctgagggtggaatgtatccacggagaggactttgtcagc 504
           | |||||||||||| ||| |||||| |||||||||||||||||| ||   ||||  ||||
Sbjct: 529 gtggaaagcttctttcattcgctgaaggtggaatgtatccacggggaacgctttagcagc 588

Query: 505 cgggaaataatgcggacagcagtgtttaattatagtgagtgtgattacaatcggtggcgt 564
           ||||||||||||||| || | |||||||||||||  ||||||||||||||||| ||||||
Sbjct: 589 cgggaaataatgcgggcaacggtgtttaattatatcgagtgtgattacaatcgctggcgt 648

Query: 565 cgtcacagtgcctgtggcggtctcagtccggaacaatttgaaaaccagaacctcgcttag 624
           |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct: 649 cgtcacagtgcctgtggcggtctcagcccggaacaatttgaaaaccataatctcgcttag 708


 Score = 172 bits (443), Expect = 7e-43
 Identities = 104/128 (81%)
 Strand = Plus / Plus

Query: 16  gccagcctgcgtcggcaggggctgcgggcgaaagcctcgcgctgattccgtccggtcagt 75
           |||||||||||||| |||||||||||||||||||||   ||    ||| | |||||||| 
Sbjct: 99  gccagcctgcgtcgtcaggggctgcgggcgaaagccagccggaagttcagcccggtcagc 158

Query: 76  taccacaaacatggtctgccagtcttagagaatctgctgaagcaggacttttacgccagc 135
           ||||    |||||| ||||| || || |||||||||||| ||||||||||   |||||| 
Sbjct: 159 taccgtgcacatggcctgcccgtattggagaatctgctggagcaggacttcagcgccagt 218

Query: 136 ggcccgaa 143
           ||||||||
Sbjct: 219 ggcccgaa 226

9) SEEB0189_17675 in NC_021844


>AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA 
          Length = 708

 Score = 657 bits (1694), Expect = e-189
 Identities = 392/480 (82%)
 Strand = Plus / Plus

Query: 388 cagaagtgggtgggtgacatcacgtatcttcgcactggttaaggctggctttatctggcc 447
           |||||||||| |||||||||||||||  | || || | | | |||||| | ||||| || 
Sbjct: 229 cagaagtgggcgggtgacatcacgtacttgcgtaccgatgagggctggttgtatctcgca 288

Query: 448 gtggttatcgatctgtggtcgcggtcagtcattggctggtcgatgtcctcgcggatgaca 507
           || || ||||| |||||||| ||  | ||||||||||||||||||||  |||| ||||||
Sbjct: 289 gtagtcatcgacctgtggtcacgcgccgtcattggctggtcgatgtcaccgcgaatgaca 348

Query: 508 gcacagcttgcctgcgatgcgttacagatggcgctgtggcggcgtaaatgtccggaatat 567
           ||||| || ||||| |||||  | || |||||| |||||||| | | | | ||||||   
Sbjct: 349 gcacaactggcctgtgatgcactgcaaatggcgttgtggcggagaagacgcccggaaagc 408

Query: 568 gtcatcgtgcatacagacagaggcggtcagtactgttcaacggattaccagagcttactg 627
           ||||| || ||||| ||| | || |||||||||||||||  |||||| |||    | |||
Sbjct: 409 gtcattgttcatacggaccgtggtggtcagtactgttcaggggattatcaggcaatgctg 468

Query: 628 aaacgccataatctgcggggaagtatgagcgccagaggttgttgttacgacaatgcctgt 687
           || || || || ||||| || |||||||| || | ||| |  ||||| ||||||||||||
Sbjct: 469 aagcgacacaacctgcgtggcagtatgagtgcgaaaggctactgttatgacaatgcctgt 528

Query: 688 gcggaaagcttcttccatacgctgaggggggaatgtatccactgagaggactttgtcagc 747
           | |||||||||||| ||| |||||| || ||||||||||||| | ||   ||||  ||||
Sbjct: 529 gtggaaagcttctttcattcgctgaaggtggaatgtatccacggggaacgctttagcagc 588

Query: 748 cgggaaataatgcggacagcagtgtttaattatagtgagtgtgattacaatcggtggcgt 807
           ||||||||||||||| || | |||||||||||||  ||||||||||||||||| ||||||
Sbjct: 589 cgggaaataatgcgggcaacggtgtttaattatatcgagtgtgattacaatcgctggcgt 648

Query: 808 cgtcacagtgcctgtggcggtctcagtccggaacaatttgaaaaccagagcctcgcttag 867
           |||||||||||||||||||||||||| |||||||||||||||||||| |  |||||||||
Sbjct: 649 cgtcacagtgcctgtggcggtctcagcccggaacaatttgaaaaccataatctcgcttag 708


 Score = 172 bits (444), Expect = 5e-43
 Identities = 104/128 (81%)
 Strand = Plus / Plus

Query: 259 gccagcctgcgtcggcaggggctgcgggcgaaagcctcgcgccggttccgtccggtcagt 318
           |||||||||||||| |||||||||||||||||||||   ||   |||| | |||||||| 
Sbjct: 99  gccagcctgcgtcgtcaggggctgcgggcgaaagccagccggaagttcagcccggtcagc 158

Query: 319 taccgcaaacatgatctgccagtctcagagaatctgctgaagcaggacttttacgccagc 378
           |||||   |||||  ||||| || |  |||||||||||| ||||||||||   |||||| 
Sbjct: 159 taccgtgcacatggcctgcccgtattggagaatctgctggagcaggacttcagcgccagt 218

Query: 379 ggcccgaa 386
           ||||||||
Sbjct: 219 ggcccgaa 226

10) SNSL254_A0365 in NC_011080


>AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA 
          Length = 708

 Score = 568 bits (1465), Expect = e-162
 Identities = 337/413 (82%)
 Strand = Plus / Plus

Query: 145 cagaagtgggtgggtgacatcacgtatcttcgcactggtgaaggctggctttatctggcc 204
           |||||||||| |||||||||||||||  | || || | ||| |||||| | ||||| || 
Sbjct: 229 cagaagtgggcgggtgacatcacgtacttgcgtaccgatgagggctggttgtatctcgca 288

Query: 205 gtggttatcgatctgtggtcgcggtcagtcattggctggtcgatgtcttcgcggatgaca 264
           || || ||||| |||||||| ||  | ||||||||||||||||||||  |||| ||||||
Sbjct: 289 gtagtcatcgacctgtggtcacgcgccgtcattggctggtcgatgtcaccgcgaatgaca 348

Query: 265 gcacagcttgcctgcgatgcgttacagatggcgctgtggcggcgtaaatgtccggaaaat 324
           ||||| || ||||| |||||  | || |||||| |||||||| | | | | |||||||  
Sbjct: 349 gcacaactggcctgtgatgcactgcaaatggcgttgtggcggagaagacgcccggaaagc 408

Query: 325 gtcatcgtgcatacagacagaggcggtcagtactgttcaacggattatcagagcttactg 384
           ||||| || ||||| ||| | || |||||||||||||||  ||||||||||    | |||
Sbjct: 409 gtcattgttcatacggaccgtggtggtcagtactgttcaggggattatcaggcaatgctg 468

Query: 385 aaacgccataatctgcggggaagtatgagcgccagaggttgttgttacgacaatgcctgt 444
           || || || || ||||| || |||||||| || | ||| |  ||||| ||||||||||||
Sbjct: 469 aagcgacacaacctgcgtggcagtatgagtgcgaaaggctactgttatgacaatgcctgt 528

Query: 445 gcggaaagcttcttccatacgctgaaggtggaatgtatccacggagaggactttgtcagc 504
           | |||||||||||| ||| ||||||||||||||||||||||||| ||   ||||  ||||
Sbjct: 529 gtggaaagcttctttcattcgctgaaggtggaatgtatccacggggaacgctttagcagc 588

Query: 505 cgggaaataatgcggacagcagtgtttaattatattgagtgtgattacaatcg 557
           ||||||||||||||| || | |||||||||||||| |||||||||||||||||
Sbjct: 589 cgggaaataatgcgggcaacggtgtttaattatatcgagtgtgattacaatcg 641


 Score = 175 bits (451), Expect = 8e-44
 Identities = 105/128 (82%)
 Strand = Plus / Plus

Query: 16  gccagcctgcgtcggcaggggctgcgggcgaaagcctcgcgccggttccgtccggtcagt 75
           |||||||||||||| |||||||||||||||||||||   ||   |||| | |||||||| 
Sbjct: 99  gccagcctgcgtcgtcaggggctgcgggcgaaagccagccggaagttcagcccggtcagc 158

Query: 76  taccgcaaacatggtctgccagtctcagagaatctgctgaagcaggacttttacgccagc 135
           |||||   |||||| ||||| || |  |||||||||||| ||||||||||   |||||| 
Sbjct: 159 taccgtgcacatggcctgcccgtattggagaatctgctggagcaggacttcagcgccagt 218

Query: 136 ggcccgaa 143
           ||||||||
Sbjct: 219 ggcccgaa 226

11) PAGR_g2474 in NC_017554


>AF141323|4|G4|5532449|AAD44733.1|Shigella_flexneri_5a_str._M90T|-|3897..4604|tnpA|-|TnpA 
          Length = 708

 Score = 415 bits (1070), Expect = e-116
 Identities = 238/279 (85%)
 Strand = Plus / Plus

Query: 199 agcctgcgccgtcaggggcccagagcaaaagctgccaggaagttcagcccggtcagctac 258
           |||||||| ||||||||||   | || |||||   | |||||||||||||||||||||||
Sbjct: 102 agcctgcgtcgtcaggggctgcgggcgaaagccagccggaagttcagcccggtcagctac 161

Query: 259 cgtgagcatggcctgccggtgtcggagaatctgctgaagcaggatttcagcgccagcggc 318
           ||||  ||||||||||| || | ||||||||||||| ||||||| ||||||||||| |||
Sbjct: 162 cgtgcacatggcctgcccgtattggagaatctgctggagcaggacttcagcgccagtggc 221

Query: 319 ccgaa-ccagaagtggtcaggagacatcacatagttacgtaccgacgagggctggttata 377
           ||||| |||||||||| | || |||||||| || || |||||||| ||||||||||| ||
Sbjct: 222 ccgaaaccagaagtgggcgggtgacatcacgtacttgcgtaccgatgagggctggttgta 281

Query: 378 tctaacggtggtcatcgacctgtggtcgcgggcagttatcggctggtcgatgtcatcacg 437
           |||  | || ||||||||||||||||| || || || || ||||||||||||||| | ||
Sbjct: 282 tctcgcagtagtcatcgacctgtggtcacgcgccgtcattggctggtcgatgtcaccgcg 341

Query: 438 gatgacagcgcaactggcctgtgatgcgctgcaaatggc 476
            |||||||| ||||||||||||||||| |||||||||||
Sbjct: 342 aatgacagcacaactggcctgtgatgcactgcaaatggc 380


 Score = 314 bits (811), Expect = 8e-86
 Identities = 175/200 (88%)
 Strand = Plus / Plus

Query: 610 actgttatgacaatgcctgcgcggaaagcttcttccactccctgaatgtggaatgtatcc 669
           ||||||||||||||||||| | |||||||||||| || || ||||| |||||||||||||
Sbjct: 509 actgttatgacaatgcctgtgtggaaagcttctttcattcgctgaaggtggaatgtatcc 568

Query: 670 atggcgagcgctttgccagccgggaaacgatgcggacggcggtgtttagttatatcgagt 729
           | || || ||||||  |||||||||||  |||||| |  ||||||||| |||||||||||
Sbjct: 569 acggggaacgctttagcagccgggaaataatgcgggcaacggtgtttaattatatcgagt 628

Query: 730 gtgattacaatcgctggcgacgccacagggcctgcggcggtctcagtccggaacagtttg 789
           ||||||||||||||||||| || ||||| ||||| ||||||||||| |||||||| ||||
Sbjct: 629 gtgattacaatcgctggcgtcgtcacagtgcctgtggcggtctcagcccggaacaatttg 688

Query: 790 aaaaccagaacctcgcttag 809
           ||||||| || |||||||||
Sbjct: 689 aaaaccataatctcgcttag 708


 Score = 162 bits (417), Expect = 7e-40
 Identities = 101/124 (81%)
 Strand = Plus / Plus

Query: 484 tgtggcggcgtaaacgcccggaaaatgtcatcgtacaaacagatcgtggcgggcaatact 543
           |||||||| | | |||||||||||  ||||| || || || || ||||| || || ||||
Sbjct: 383 tgtggcggagaagacgcccggaaagcgtcattgttcatacggaccgtggtggtcagtact 442

Query: 544 gttcagtggattatcagactctgctaaagcggtacaacctgcgtggtagcatgagtgc-a 602
           |||||| |||||||||| |  |||| |||||  ||||||||||||| || |||||||| |
Sbjct: 443 gttcaggggattatcaggcaatgctgaagcgacacaacctgcgtggcagtatgagtgcga 502

Query: 603 aagg 606
           ||||
Sbjct: 503 aagg 506


 Score = 47 bits (122), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

Query: 115 gcaaagcagcgttacggtgctccccg 140
           ||||||||||| ||||||||||||||
Sbjct: 30  gcaaagcagcgatacggtgctccccg 55