Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of Z1599 gene of NC_002655_P2

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SbBS512_E2398
( - )

NC_010658
(Shigella boydii CDC 3083-94)

e-162

91.4

2) SbBS512_E2142
( - )

NC_010658
(Shigella boydii CDC 3083-94)

e-161

91.1

3) ROD_31801
( - )

NC_013716
(Citrobacter rodentium ICC168)

9e-62

• Sequence Alignments

1) SbBS512_E2398 in NC_010658


>NC_002655_P2|39|G39|15801087|NP_287103.1|Escherichia_coli_O157:H7_EDL933|+|30974..31324|-|Z1599|hypothetical 
          Length = 351

 Score = 569 bits (1467), Expect = e-162
 Identities = 307/336 (91%)
 Strand = Plus / Minus

Query: 97  ttacaacattgtcagtgcgttaaggcgggatgtttttggctgacgccagtccagcttatc 156
           |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 351 ttacaacattgtcagtgcattaaggcgggatgttttgggctgacgccagtccagtttatc 292

Query: 157 gaggagcattgccagttgcgagcgggtaatggataccttgccgtcacgcacagcaggcca 216
           ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 291 gaggagcattgccagctgcgagcgggtaatggataccttaccgtcacgcaccgcaggcca 232

Query: 217 gataaactggccttcctccaggcgtctggtgaacaggcacagaccatcagcatcagccca 276
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 231 gataaactggccttcctccagacgtttggtgaacaggcacagaccatcagcatcagccca 172

Query: 277 caggattttaatcatgtcaccccgtcggccacggaagatgaacaggtgaccggagaaggg 336
           ||| ||||||||| |||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 171 cagaattttaatcgtgtcaccccgtcggccgcgaaagataaacaggtgaccggagaaggg 112

Query: 337 attatcattcagcacatgctgtacctgttcacccagcccgttgaaagacttacgcatatc 396
            || |||| ||||||||| ||||||||||| ||||| |||||||| || |||||||||||
Sbjct: 111 gttctcatccagcacatgttgtacctgttctcccagaccgttgaaggatttacgcatatc 52

Query: 397 ggttatcccagcaacgagccagatgcgggtgcctga 432
            || |  || ||||| |||||||| || ||||||||
Sbjct: 51  agtaacgccggcaaccagccagattcgagtgcctga 16

2) SbBS512_E2142 in NC_010658


>NC_002655_P2|39|G39|15801087|NP_287103.1|Escherichia_coli_O157:H7_EDL933|+|30974..31324|-|Z1599|hypothetical 
          Length = 351

 Score = 564 bits (1456), Expect = e-161
 Identities = 306/336 (91%)
 Strand = Plus / Minus

Query: 40  ttacaacattgtcagagcgttaaggcgggatgtttttggctgacgccagtccagcttatc 99
           ||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 351 ttacaacattgtcagtgcattaaggcgggatgttttgggctgacgccagtccagtttatc 292

Query: 100 gaggagcattgccagttgcgagcgggtaatggataccttgccgtcacgcacagcaggcca 159
           ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 291 gaggagcattgccagctgcgagcgggtaatggataccttaccgtcacgcaccgcaggcca 232

Query: 160 gataaactggccttcctccaggcgtctggtgaacaggcacagaccatcagcatcagccca 219
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 231 gataaactggccttcctccagacgtttggtgaacaggcacagaccatcagcatcagccca 172

Query: 220 caggattttaatcatgtcaccccgtcggccacggaagatgaacaggtgaccggagaaggg 279
           ||| ||||||||| |||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 171 cagaattttaatcgtgtcaccccgtcggccgcgaaagataaacaggtgaccggagaaggg 112

Query: 280 attatcattcagcacatgctgtacctgttcacccagcccgttgaaagacttacgcatatc 339
            || |||| ||||||||| ||||||||||| ||||| |||||||| || |||||||||||
Sbjct: 111 gttctcatccagcacatgttgtacctgttctcccagaccgttgaaggatttacgcatatc 52

Query: 340 ggttatcccagcaacgagccagatgcgggtgcctga 375
            || |  || ||||| |||||||| || ||||||||
Sbjct: 51  agtaacgccggcaaccagccagattcgagtgcctga 16

3) ROD_31801 in NC_013716


>NC_002655_P2|39|G39|15801087|NP_287103.1|Escherichia_coli_O157:H7_EDL933|+|30974..31324|-|Z1599|hypothetical 
          Length = 351

 Score = 234 bits (605), Expect = 9e-62
 Identities = 141/166 (85%)
 Strand = Plus / Plus

Query: 179 gatgctgatg------gcctg---accaaacgccttgaagaagggtcgtttatctggcct 229
           ||||||||||      |||||   |||||||| || || |||||   |||||||||||||
Sbjct: 178 gatgctgatggtctgtgcctgttcaccaaacgtctggaggaaggccagtttatctggcct 237

Query: 230 gcggtgcgtgatggtaagatctccatgacccgctcacaactggcaatgctcttcaataaa 289
           ||||||||||| |||||| | ||||| |||||||| || |||||||||||| || |||||
Sbjct: 238 gcggtgcgtgacggtaaggtatccattacccgctcgcagctggcaatgctcctcgataaa 297

Query: 290 ctggactggcgtcagccgaaaacatcccgccttaacgcactgacaa 335
           ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 298 ctggactggcgtcagcccaaaacatcccgccttaatgcactgacaa 343


 Score = 229 bits (592), Expect = 3e-60
 Identities = 131/152 (86%)
 Strand = Plus / Plus

Query: 1   atgatctccctcccatcaggtacccgtatctggctggttgcaggtgtgacagatatgcgt 60
           |||||||| ||||||||||| || || |||||||||||||| || || || |||||||||
Sbjct: 1   atgatctcgctcccatcaggcactcgaatctggctggttgccggcgttactgatatgcgt 60

Query: 61  aaatccttcaacggactgagggaacaaatacaacatatgctgaatgataacaccttctcc 120
           |||||||||||||| ||| | |||||  |||||||| ||||| |||| ||| ||||||||
Sbjct: 61  aaatccttcaacggtctgggagaacaggtacaacatgtgctggatgagaaccccttctcc 120

Query: 121 gatcacctgtttatcttccgtagccgacgggg 152
           | ||||||||||||||| ||  ||||||||||
Sbjct: 121 ggtcacctgtttatctttcgcggccgacgggg 152