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Homologs of escR gene of JQ747540

601

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ECs4583
( NP_312610.1 )

type III secretion system protein

NC_002695
(Escherichia coli Sakai)

3e-73

2) escR
( YP_003232138.1 )

type III secretion system protein

NC_013361
(Escherichia coli 11368)

7e-73

3) escR
( YP_003223490.1 )

T3SS structure protein EscR

NC_013353
(Escherichia coli 12009)

7e-73

4) escR
( YP_003236103.1 )

T3SS structure protein EscR

NC_013364
(Escherichia coli 11128)

8e-73

5) escR
( YP_003501889.1 )

type III secretion system EscR protein

NC_013941
(Escherichia coli CB9615)

8e-73

6) escR
( YP_002331425.1 )

type III secretion system protein

NC_011601
(Escherichia coli E2348/69)

8e-73

7) epaP
( YP_002273179.1 )

type III secretion system protein

NC_011353
(Escherichia coli EC4115)

8e-73

8) escR
( NP_290283.1 )

type III secretion system protein

NC_002655
(Escherichia coli EDL933)

8e-73

9) ECO55CA74_21290
( YP_006161363.1 )

type III secretion system protein YscR

NC_017656
(Escherichia coli RM12579)

8e-73

10) escR
( YP_003080495.1 )

type III secretion system protein

NC_013008
(Escherichia coli TW14359)

8e-73

11) CDCO157_4318
( YP_006315183.1 )

type III secretion system protein

NC_017906
(Escherichia coli Xuzhou21)

8e-73

12) escR
( YP_003366517.1 )

T3SS structural protein EscR

NC_013716
(Citrobacter rodentium ICC168)

7e-72

13) Sbal175_2391
( YP_006020948.1 )

Yop virulence translocation R

NC_017571
(Shewanella baltica BA175)

1e-53

14) Sbal117_2090
( YP_006037321.1 )

Yop virulence translocation R

NC_017579
(Shewanella baltica OS117)

1e-53

15) Sbal_1974
( YP_001050347.1 )

type III secretion system protein

NC_009052
(Shewanella baltica OS155)

1e-53

16) Sbal195_2278
( YP_001554706.1 )

type III secretion system protein

NC_009997
(Shewanella baltica OS195)

1e-53

17) Sbal678_2288
( YP_005273495.1 )

Yop virulence translocation R

NC_016901
(Shewanella baltica OS678)

1e-53

18) SVI_2230
( YP_003556979.1 )

type III secretion system EscR protein

NC_014012
(Shewanella violacea DSS12)

2e-53

19) escR
( NP_902277.1 )

type III secretion system protein

NC_005085
(Chromobacterium violaceum ATCC 12472)

5e-49

20) Y11_35451
( YP_006007044.1 )

type III secretion inner membrane protein

NC_017564
(Yersinia enterocolitica Y11)

8e-45

21) fliP1
( NP_991819.2 )

type III secretion system protein

NC_005810
(Yersinia pestis 91001)

2e-44

22) A1122_03785
( YP_005520452.1 )

type III secretion system protein YscR

NC_017168
(Yersinia pestis A1122)

2e-44

23) epaP
( YP_001608228.1 )

type III secretion system protein

NC_010159
(Yersinia pestis Angola)

2e-44

24) YPA_4012
( YP_653918.1 )

type III secretion system protein

NC_008150
(Yersinia pestis Antiqua)

2e-44

25) YPO0270
( YP_002345352.1 )

type III secretion system protein

NC_003143
(Yersinia pestis CO92)

2e-44

26) YPD4_0235
( YP_005503447.1 )

putative type III secretion apparatus protein

NC_017154
(Yersinia pestis D106004)

2e-44

27) YPD8_0240
( YP_005507323.1 )

putative type III secretion apparatus protein

NC_017160
(Yersinia pestis D182038)

2e-44

28) y0530
( NP_667867.1 )

type III secretion system protein

NC_004088
(Yersinia pestis KIM)

2e-44

29) YPN_3397
( YP_649324.1 )

type III secretion system protein

NC_008149
(Yersinia pestis Nepal516)

2e-44

30) YPDSF_3700
( YP_001165023.1 )

type III secretion system protein

NC_009381
(Yersinia pestis Pestoides F)

2e-44

31) YPZ3_0233
( YP_003566405.1 )

putative type III secretion apparatus protein

NC_014029
(Yersinia pestis Z176003)

2e-44

32) epaP
( YP_001402768.1 )

type III secretion system protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

2e-44

33) YPTB0327
( YP_068873.2 )

type III secretion system protein

NC_006155
(Yersinia pseudotuberculosis IP 32953)

2e-44

34) YPTS_0351
( YP_001870797.1 )

type III secretion system protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

2e-44

35) YPK_3902
( YP_001722620.1 )

type III secretion system protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

2e-44

36) ETAC_04225
( YP_007628336.1 )

type III secretion system protein YscR

NC_020796
(Edwardsiella tarda C07-087)

2e-44

37) esaR
( YP_003294936.1 )

type three secretion apparatus protein R

NC_013508
(Edwardsiella tarda EIB202)

2e-44

38) esaR
( YP_005698435.1 )

protein EsaR

NC_017309
(Edwardsiella tarda FL6-60)

2e-44

39) YE105_C0338
( YP_004296539.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_015224
(Yersinia enterocolitica 105.5R(r))

4e-44

40) SARI_01563
( YP_001570599.1 )

type III secretion system protein

NC_010067
(Salmonella enterica RSK2980)

7e-44

41) HCH_03263
( YP_434447.1 )

type III secretion system protein

NC_007645
(Hahella chejuensis KCTC 2396)

7e-44

42) ssaR
( YP_008265618.1 )

flagellar biosynthesis protein FliP

NC_021820
(Salmonella enterica 08-1736)

1e-43

43) ssaR
( YP_005237289.1 )

type III secretion system protein

NC_016856
(Salmonella enterica 14028S)

1e-43

44) ssaR
( YP_002226666.1 )

type III secretion system protein

NC_011274
(Salmonella enterica 287/91)

1e-43

45) SBOV14161
( YP_008505286.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_022241
(Salmonella enterica 3114)

1e-43

46) SEEH1578_16330
( YP_008247325.1 )

type III secretion system protein YscR

NC_021810
(Salmonella enterica 41578)

1e-43

47) yscR
( YP_005396816.1 )

type III secretion protein

NC_017046
(Salmonella enterica 798)

1e-43

48) SSPA1332
( YP_002142171.1 )

type III secretion system protein

NC_011147
(Salmonella enterica AKU12601)

1e-43

49) yscR
( YP_150685.1 )

type III secretion protein

NC_006511
(Salmonella enterica ATCC 9150)

1e-43

50) SU5_02035
( YP_006087669.1 )

Type III secretion inner membrane protein

NC_017623
(Salmonella enterica B182)

1e-43

51) ssaR
( YP_008480906.1 )

putative type III secretion protein

NC_022221
(Salmonella enterica CDC1983-67)

1e-43

52) ssaR
( YP_008308803.1 )

flagellar biosynthesis protein FliP

NC_021844
(Salmonella enterica CFSAN000189)

1e-43

53) ssaR
( YP_008255384.1 )

flagellar biosynthesis protein FliP

NC_021814
(Salmonella enterica CFSAN001921)

1e-43

54) CFSAN001992_04495
( YP_007470657.1 )

type III secretion system protein YscR

NC_020307
(Salmonella enterica CFSAN001992)

1e-43

55) ssaR
( YP_008260609.1 )

flagellar biosynthesis protein FliP

NC_021818
(Salmonella enterica CFSAN002050)

1e-43

56) ssaR
( YP_008249241.1 )

flagellar biosynthesis protein FliP

NC_021812
(Salmonella enterica CFSAN002069)

1e-43

57) epaP
( YP_002215713.1 )

type III secretion system protein

NC_011205
(Salmonella enterica CT_02021853)

1e-43

58) epaP
( YP_002114432.1 )

type III secretion system protein

NC_011094
(Salmonella enterica CVM19633)

1e-43

59) STMMW_14241
( YP_005232478.1 )

putative type III secretion protein

NC_016854
(Salmonella enterica D23580)

1e-43

60) ssaR
( NP_460384.1 )

type III secretion system protein

NC_003197
(Salmonella enterica LT2)

1e-43

61) ssaR
( YP_002243726.1 )

type III secretion system protein

NC_011294
(Salmonella enterica P125109)

1e-43

62) yscR
( YP_002637868.1 )

type III secretion system protein

NC_012125
(Salmonella enterica RKS4594)

1e-43

63) ssaR
( YP_005212444.1 )

putative type III secretion protein

NC_016831
(Salmonella enterica RKS5078)

1e-43

64) ssaR
( YP_008380650.1 )

flagellar biosynthesis protein FliP

NC_021984
(Salmonella enterica S06004)

1e-43

65) ssaR
( YP_216427.1 )

type III secretion system protein

NC_006905
(Salmonella enterica SC-B67)

1e-43

66) SPAB_01906
( YP_001588129.1 )

type III secretion system protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

1e-43

67) yscR
( YP_005181263.1 )

putative type III secretion protein

NC_016810
(Salmonella enterica SL1344)

1e-43

68) epaP
( YP_002040671.1 )

type III secretion system protein

NC_011080
(Salmonella enterica SL254)

1e-43

69) epaP
( YP_002045422.1 )

type III secretion system protein

NC_011083
(Salmonella enterica SL476)

1e-43

70) ssaR
( YP_005242320.1 )

type III secretion system protein

NC_016857
(Salmonella enterica ST4/74)

1e-43

71) STMDT12_C14350
( YP_005247131.1 )

type III secretion system protein

NC_016860
(Salmonella enterica T000240)

1e-43

72) STU288_03415
( YP_007901788.1 )

type III secretion system protein YscR

NC_021151
(Salmonella enterica U288)

1e-43

73) ssaR
( YP_005251923.1 )

type III secretion system protein

NC_016863
(Salmonella enterica UK-1)

1e-43

74) SN31241_24890
( YP_008360405.1 )

Virulence protein yscR

NC_021902
(Salmonella enterica USMARC-S3124.1)

1e-43

75) epaP
( YP_002146623.1 )

type III secretion system protein

NC_011149
(Salmonella enterica SL483)

2e-43

76) SG1305
( YP_454985.1 )

type III secretion system protein

NC_007712
(Sodalis glossinidius morsitans)

2e-43

77) yscR
( NP_456109.1 )

putative type III secretion protein

NC_003198
(Salmonella enterica CT18)

5e-43

78) STBHUCCB_13770
( YP_005216935.1 )

hypothetical protein

NC_016832
(Salmonella enterica P-stx-12)

5e-43

79) yscR
( NP_805090.1 )

type III secretion system protein

NC_004631
(Salmonella enterica Ty2)

5e-43

80) TY21A_06540
( YP_007925612.1 )

type III secretion system protein

NC_021176
(Salmonella enterica Ty21a)

5e-43

81) NT01EI_0960
( YP_002932408.1 )

type III secretion apparatus protein, YscR/HrcR family, putative

NC_012779
(Edwardsiella ictaluri 93-146)

1e-41

82) yscR
( YP_004677245.1 )

Yop proteins translocation protein R

NC_015717
(Hyphomicrobium sp. MC1)

2e-41

83) H045_00190
( YP_007395610.1 )

type III secretion system protein YscR

NC_020209
(Pseudomonas poae RE*1-1-14)

4e-41

84) NH44784_014541
( YP_008028549.1 )

Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

4e-39

85) spaP
( YP_006216510.1 )

type III secretion system protein SpaP

NC_017731
(Providencia stuartii MRSN 2154)

5e-39

86) Dvul_2984
( YP_961183.1 )

type III secretion system protein

NC_008741
(Desulfovibrio vulgaris DP4)

6e-39

87) DVUA0122
( YP_009162.1 )

type III secretion system protein

NC_005863
(Desulfovibrio vulgaris Hildenborough)

6e-39

88) Deval_3224
( YP_005704003.1 )

Yop virulence translocation R

NC_017311
(Desulfovibrio vulgaris RCH1)

6e-39

89) hrcR
( YP_006032351.1 )

hrp protein hrcr

NC_017575
(Ralstonia solanacearum Po82)

2e-38

90) DvMF_2439
( YP_002436848.1 )

type III secretion system protein

NC_011769
(Desulfovibrio vulgaris Miyazaki F)

3e-38

91) PSEBR_a5382
( YP_004356892.1 )

type III secretion protein

NC_015379
(Pseudomonas brassicacearum NFM421)

4e-38

92) bscR
( YP_006967888.1 )

type III secretion protein

NC_019382
(Bordetella bronchiseptica 253)

5e-38

93) bscR
( NP_888177.1 )

type III secretion system protein

NC_002927
(Bordetella bronchiseptica RB50)

5e-38

94) bscR
( NP_884486.1 )

type III secretion system protein

NC_002928
(Bordetella parapertussis 12822)

5e-38

95) bscR
( YP_006895376.1 )

type III secretion protein

NC_018828
(Bordetella parapertussis Bpp5)

5e-38

96) rscR
( YP_002870380.1 )

type III secretion system protein

NC_012660
(Pseudomonas fluorescens SBW25)

5e-38

97) ssaR
( YP_002924940.1 )

type III secretion system protein

NC_012751
(Candidatus Hamiltonella defensa T5A)

6e-38

98) hrcR
( YP_005210969.1 )

protein HrcR

NC_016830
(Pseudomonas fluorescens F113)

6e-38

99) bscR
( YP_006899833.1 )

type III secretion protein

NC_018829
(Bordetella bronchiseptica MO149)

1e-37

100) bscR
( YP_006625537.1 )

type III secretion protein

NC_018518
(Bordetella pertussis 18323)

1e-37

101) bscR
( YP_005590274.1 )

type III secretion system protein

NC_017223
(Bordetella pertussis CS)

1e-37

102) bscR
( NP_880884.1 )

type III secretion system protein

NC_002929
(Bordetella pertussis Tohama I)

1e-37

103) yscR
( YP_436217.1 )

type III secretion system protein

NC_007645
(Hahella chejuensis KCTC 2396)

4e-37

104) sctR
( NP_930977.1 )

type III secretion system protein

NC_005126
(Photorhabdus luminescens TTO1)

8e-37

105) sctR
( YP_003039885.1 )

type iii secretion component protein sctr

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

9e-37

106) G655_16715
( YP_007710183.1 )

type III secretion system protein YscR

NC_020912
(Pseudomonas aeruginosa B136-33)

9e-37

107) pscR
( YP_005975938.1 )

type III secretion system protein

NC_017548
(Pseudomonas aeruginosa M18)

9e-37

108) pscR
( YP_005980835.1 )

type III secretion system protein

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

9e-37

109) pscR
( NP_250384.1 )

type III secretion system protein

NC_002516
(Pseudomonas aeruginosa PAO1)

9e-37

110) ssaR
( YP_008132244.1 )

flagellar biosynthesis protein FliP

NC_021577
(Pseudomonas aeruginosa RP73)

9e-37

111) pscR
( YP_791552.1 )

type III secretion system protein

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

9e-37

112) PADK2_17235
( YP_006483428.1 )

type III secretion system protein YscR

NC_018080
(Pseudomonas aeruginosa DK2)

1e-36

113) Marme_1071
( YP_004312182.1 )

Yop virulence translocation R

NC_015276
(Marinomonas mediterranea MMB-1)

1e-36

114) pscR
( YP_002441218.1 )

type III secretion system protein

NC_011770
(Pseudomonas aeruginosa LESB58)

6e-36

115) hrcR
( YP_004754990.1 )

type III secretion inner membrane protein

NC_015856
(Collimonas fungivorans Ter331)

6e-36

116) yscR
( NP_995367.1 )

type III secretion system protein

NC_005813
(Yersinia pestis 91001)

8e-36

117) yscR
( YP_001604476.1 )

type III secretion system protein

NC_010157
(Yersinia pestis Angola)

8e-36

118) YPA_CD0018
( YP_636810.1 )

type III secretion system protein

NC_008122
(Yersinia pestis Antiqua)

8e-36

119) yscR
( NP_395178.1 )

type III secretion system protein

NC_003131
(Yersinia pestis CO92)

8e-36

120) yscR
( YP_005503177.1 )

needle complex export protein

NC_017153
(Yersinia pestis D106004)

8e-36

121) yscR
( YP_005506960.1 )

needle complex export protein

NC_017157
(Yersinia pestis D182038)

8e-36

122) YPDSF_3973
( YP_001154602.1 )

type III secretion system protein

NC_009377
(Yersinia pestis Pestoides F)

8e-36

123) yscR
( YP_003560536.1 )

needle complex export protein

NC_014017
(Yersinia pestis Z176003)

8e-36

124) pYV0071
( YP_068480.1 )

type III secretion system protein

NC_006153
(Yersinia pseudotuberculosis IP 32953)

8e-36

125) YPTS_4289
( YP_001874689.1 )

type III secretion system protein

NC_010635
(Yersinia pseudotuberculosis PB1/+)

8e-36

126) rscR
( YP_006322231.1 )

type III secretion protein RscR

NC_017911
(Pseudomonas fluorescens A506)

8e-36

127) YE105_P0026
( YP_004424928.1 )

type III secretion system protein

NC_015475
(Yersinia enterocolitica 105.5R(r))

9e-36

128) yscR
( YP_001004082.1 )

type III secretion system protein

NC_008791
(Yersinia enterocolitica 8081)

9e-36

129) Y11_p0741
( YP_006007922.1 )

type III secretion inner membrane protein

NC_017565
(Yersinia enterocolitica Y11)

9e-36

130) hrcR
( YP_001906463.1 )

type III secretion system protein

NC_010694
(Erwinia tasmaniensis Et1/99)

2e-35

131) ascR
( YP_001144302.1 )

type III secretion system protein

NC_009350
(Aeromonas salmonicida A449)

3e-35

132) hrcR
( YP_198720.1 )

type III secretion system protein

NC_006834
(Xanthomonas oryzae KACC10331)

3e-35

133) XOO_0095
( YP_449124.1 )

type III secretion system protein

NC_007705
(Xanthomonas oryzae MAFF 311018)

5e-35

134) epaP
( YP_001911274.1 )

type III secretion system protein

NC_010717
(Xanthomonas oryzae PXO99A)

5e-35

135) hrcR
( NP_640757.1 )

type III secretion system protein

NC_003919
(Xanthomonas axonopodis 306)

6e-35

136) hrcR
( YP_004849999.1 )

type III secretion system protein

NC_016010
(Xanthomonas axonopodis F1)

6e-35

137) XAC29_02060
( YP_007634905.1 )

type III secretion system protein YscR

NC_020800
(Xanthomonas axonopodis Xac29-1)

6e-35

138) hrcR
( YP_362153.1 )

type III secretion system protein

NC_007508
(Xanthomonas campestris 85-10)

6e-35

139) hrcR
( YP_007648827.1 )

HrcR protein

NC_020815
(Xanthomonas citri Aw12879)

6e-35

140) hrcR
( YP_005630680.1 )

type III secretion protein HrcR

NC_017267
(Xanthomonas oryzae BLS256)

8e-35

141) yscR
( YP_005082209.1 )

Yop proteins translocation protein R

NC_016642
(Pseudovibrio sp. FO-BEG1)

2e-34

142) hrcR
( YP_005636495.1 )

type III secretion protein HrcR

NC_017271
(Xanthomonas campestris 756C)

2e-34

143) XC_3016
( YP_244084.1 )

type III secretion system protein

NC_007086
(Xanthomonas campestris 8004)

2e-34

144) hrcR
( NP_636600.1 )

type III secretion system protein

NC_003902
(Xanthomonas campestris ATCC 33913)

2e-34

145) xccb100_3079
( YP_001904484.1 )

type III secretion system protein

NC_010688
(Xanthomonas campestris B100)

2e-34

146) C770_GR4pC1264
( YP_007193547.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_019848
(Sinorhizobium meliloti GR4)

2e-34

147) sctR
( YP_007365636.1 )

type III secretion system protein

NC_020127
(Lawsonia intracellularis N343)

9e-34

148) SctR
( YP_594912.1 )

type III secretion system protein

NC_008011
(Lawsonia intracellularis PHE/MN1-00)

9e-34

149) SFHH103_04957
( YP_005191562.1 )

RhcR-like, type III secretion system

NC_016815
(Sinorhizobium fredii HH103)

2e-33

150) USDA257_c21640
( YP_006397503.1 )

translocation protein y4yL

NC_018000
(Sinorhizobium fredii USDA 257)

2e-33

151) rhcR
( YP_002824496.1 )

type III secretion system protein

NC_012586
(Sinorhizobium fredii NGR234)

2e-33

152) fliP
( YP_004395820.1 )

flagellar biosynthetic protein FliP

NC_015425
(Clostridium botulinum BKT015925)

3e-33

153) H650_14845
( YP_008108769.1 )

hypothetical protein

NC_021500
(Enterobacter sp. R4-368)

3e-33

154) fliP
( YP_002796342.1 )

flagellar biosynthesis protein FliP

NC_012559
(Laribacter hongkongensis HLHK9)

5e-33

155) Pmen_0046
( YP_001185552.1 )

type III secretion system protein

NC_009439
(Pseudomonas mendocina ymp)

3e-32

156) Thet_1223
( YP_003904117.1 )

flagellar biosynthetic protein FliP

NC_014538
(Thermoanaerobacter sp. X513)

3e-32

157) fliP
( YP_001663299.1 )

flagellar biosynthesis protein FliP

NC_010320
(Thermoanaerobacter sp. X514)

3e-32

158) spaP
( YP_001907833.1 )

surface presentation of antigens protein SpaP

NC_010694
(Erwinia tasmaniensis Et1/99)

5e-32

159) hrcR
( YP_003774221.1 )

type III secretion HrcR transmembrane protein

NC_014323
(Herbaspirillum seropedicae SmR1)

5e-32

160) HrcR
( YP_234300.1 )

type III secretion system protein

NC_007005
(Pseudomonas syringae B728a)

6e-32

161) hrcR
( YP_273544.2 )

type III secretion system protein

NC_005773
(Pseudomonas syringae 1448A)

6e-32

162) Marme_3223
( YP_004314275.1 )

flagellar biosynthetic protein FliP

NC_015276
(Marinomonas mediterranea MMB-1)

7e-32

163) MXAN_2447
( YP_630667.1 )

type III secretion system protein

NC_008095
(Myxococcus xanthus DK 1622)

1e-31

164) fliP
( YP_004846442.1 )

flagellar biosynthetic protein FliP

NC_016002
(Pseudogulbenkiania sp. NH8B)

1e-31

165) MYSTI_02838
( YP_007359838.1 )

type III secretion system protein

NC_020126
(Myxococcus stipitatus DSM 14675)

2e-31

166) fliP
( YP_007398170.1 )

flagellar biosynthesis protein FliP

NC_020209
(Pseudomonas poae RE*1-1-14)

2e-31

167) Daud_1753
( YP_001717881.1 )

flagellar biosynthetic protein FliP

NC_010424
(Candidatus Desulforudis audaxviator MP104C)

3e-31

168) LILAB_19925
( YP_004666965.1 )

type III secretion system protein

NC_015711
(Myxococcus fulvus HW-1)

3e-31

169) JCM7686_1775
( YP_008404643.1 )

type III secretion protein

NC_022041
(Paracoccus aminophilus JCM 7686)

3e-31

170) fliP
( YP_002873959.1 )

flagellar biosynthesis protein FliP

NC_012660
(Pseudomonas fluorescens SBW25)

3e-31

171) spaP
( NP_902294.1 )

surface presentation of antigens protein SpaP

NC_005085
(Chromobacterium violaceum ATCC 12472)

4e-31

172) fliP
( NP_871053.1 )

flagellar biosynthesis protein FliP

NC_004344
(Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis)

6e-31

173) Deba_2315
( YP_003808271.1 )

flagellar biosynthetic protein FliP

NC_014365
(Desulfarculus baarsii DSM 2075)

1e-30

174) PSEBR_a1491
( YP_004352690.1 )

flagellar biosynthetic protein

NC_015379
(Pseudomonas brassicacearum NFM421)

6e-31

175) fliP
( YP_005206995.1 )

protein FliP

NC_016830
(Pseudomonas fluorescens F113)

6e-31

176) MDS_1862
( YP_004379645.1 )

flagellar biosynthesis protein FliP

NC_015410
(Pseudomonas mendocina NK-01)

6e-31

177) fliP
( YP_001394554.1 )

flagellar biosynthesis protein FliP

NC_009706
(Clostridium kluyveri DSM 555)

7e-31

178) fliP
( YP_002471527.1 )

flagellar biosynthesis protein FliP

NC_011837
(Clostridium kluyveri NBRC 12016)

7e-31

179) fliP
( YP_275528.1 )

flagellar biosynthesis protein FliP

NC_005773
(Pseudomonas syringae 1448A)

8e-31

180) fliP
( YP_236514.1 )

flagellar biosynthesis protein FliP

NC_007005
(Pseudomonas syringae B728a)

8e-31

181) fliP
( YP_005371584.1 )

type III secretion system protein

NC_017030
(Corallococcus coralloides DSM 2259)

9e-31

182) fliP
( YP_001188299.1 )

flagellar biosynthesis protein FliP

NC_009439
(Pseudomonas mendocina ymp)

1e-30

183) Ser39006_2919
( YP_008523301.1 )

Yop virulence translocation R

NC_022268
(Serratia sp. ATCC 39006)

1e-30

184) MU9_1792
( YP_007505211.1 )

Flagellar biosynthesis protein FliP

NC_020418
(Morganella morganii KT)

2e-30

185) H650_09085
( YP_008107643.1 )

flagellar biosynthesis protein FliP

NC_021500
(Enterobacter sp. R4-368)

2e-30

186) REMIM1_PE00285
( YP_008368039.1 )

type III secretion system FliP/YscR family protein

NC_021909
(Rhizobium etli Mim1)

2e-30

187) Adeg_2033
( YP_003239961.1 )

flagellar biosynthetic protein FliP

NC_013385
(Ammonifex degensii KC4)

2e-30

188) spaP
( YP_005207205.1 )

protein SpaP

NC_016830
(Pseudomonas fluorescens F113)

3e-30

189) spaP
( YP_007030625.1 )

surface presentation of antigens protein

NC_019670
(Pseudomonas sp. UW4)

3e-30

190) Clopa_2925
( YP_007941440.1 )

flagellar biosynthetic protein FliP

NC_021182
(Clostridium pasteurianum BC1)

3e-30

191) fliP
( NP_623044.1 )

flagellar biosynthesis protein FliP

NC_003869
(Thermoanaerobacter tengcongensis MB4)

3e-30

192) ETAC_10205
( YP_007629522.1 )

Flagellar biosynthesis protein FliP

NC_020796
(Edwardsiella tarda C07-087)

4e-30

193) fliP
( YP_003296198.1 )

flagellar biosynthesis pathway protein FliP

NC_013508
(Edwardsiella tarda EIB202)

4e-30

194) fliP
( YP_005699542.1 )

Flagellar biosynthesis protein FliP

NC_017309
(Edwardsiella tarda FL6-60)

4e-30

195) fliP
( YP_003539639.1 )

flagellar biosynthetic protein

NC_013971
(Erwinia amylovora ATCC 49946)

4e-30

196) fliP3
( YP_003532039.1 )

flagellar biosynthetic protein FliP

NC_013961
(Erwinia amylovora CFBP1430)

4e-30

197) Mar181_0819
( YP_004480792.1 )

flagellar biosynthetic protein FliP

NC_015559
(Marinomonas posidonica IVIA-Po-181)

4e-30

198) NT01EI_2431
( YP_002933836.1 )

flagellar biosynthetic protein FliP, putative

NC_012779
(Edwardsiella ictaluri 93-146)

5e-30

199) fliP
( YP_007710437.1 )

flagellar biosynthesis protein FliP

NC_020912
(Pseudomonas aeruginosa B136-33)

5e-30

200) fliP
( YP_006483676.1 )

flagellar biosynthesis protein FliP

NC_018080
(Pseudomonas aeruginosa DK2)

5e-30

201) fliP
( YP_002441550.1 )

flagellar biosynthesis protein FliP

NC_011770
(Pseudomonas aeruginosa LESB58)

5e-30

202) fliP
( YP_005976268.1 )

flagellar biosynthesis protein FliP

NC_017548
(Pseudomonas aeruginosa M18)

5e-30

203) fliP
( YP_005980573.1 )

flagellar biosynthesis protein

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

5e-30

204) fliP
( NP_250137.1 )

flagellar biosynthesis protein FliP

NC_002516
(Pseudomonas aeruginosa PAO1)

5e-30

205) M062_07750
( YP_008131995.1 )

flagellar biosynthesis protein FliP

NC_021577
(Pseudomonas aeruginosa RP73)

5e-30

206) fliP
( YP_791806.1 )

flagellar biosynthesis protein FliP

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

5e-30

207) fliP
( YP_005816715.1 )

Flagellar biosynthetic protein FliP

NC_017445
(Erwinia sp. Ejp617)

5e-30

208) ENC_28610
( YP_007846393.1 )

flagellar biosynthetic protein FliP

NC_021046
(Enterobacter cloacae NCTC 9394)

6e-30

209) fliP
( YP_001452577.1 )

flagellar biosynthesis protein FliP

NC_009792
(Citrobacter koseri ATCC BAA-895)

7e-30

210) Entcl_1801
( YP_003941341.1 )

flagellar biosynthetic protein FliP

NC_014618
(Enterobacter cloacae SCF1)

7e-30

211) fliP
( YP_005801745.1 )

flagellar biosynthetic protein FliP

NC_017390
(Erwinia pyrifoliae DSM 12163)

7e-30

212) fliP
( YP_002647972.1 )

flagellar biosynthetic protein FliP

NC_012214
(Erwinia pyrifoliae Ep1/96)

7e-30

213) fliP
( YP_587429.1 )

flagellar biosynthesis protein FliP

NC_007974
(Cupriavidus metallidurans CH34)

9e-30

214) hrcR
( YP_050174.1 )

type III secretion system protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

9e-30

215) fliP
( YP_004751609.1 )

flagellar biosynthesis protein

NC_015856
(Collimonas fungivorans Ter331)

1e-29

216) fliP
( YP_003613714.1 )

flagellar biosynthesis protein FliP

NC_014121
(Enterobacter cloacae ATCC 13047)

1e-29

217) fliP
( YP_004952741.1 )

flagellar biosynthetic protein fliP

NC_016514
(Enterobacter cloacae EcWSU1)

1e-29

218) fliP
( YP_006478314.1 )

flagellar biosynthesis protein FliP

NC_018079
(Enterobacter cloacae SDM)

1e-29

219) A464_2127
( YP_008322722.1 )

Flagellar biosynthesis protein FliP

NC_021870
(Salmonella bongori N268-08)

1e-29

220) fliP
( YP_004730660.1 )

flagellar biosynthetic protein FliP

NC_015761
(Salmonella bongori NCTC 12419)

1e-29

221) fliP
( YP_008266182.1 )

flagellar biosynthesis protein FliP

NC_021820
(Salmonella enterica 08-1736)

1e-29

222) fliP
( YP_005237949.1 )

flagellar biosynthesis protein FliP

NC_016856
(Salmonella enterica 14028S)

1e-29

223) fliP
( YP_002226128.1 )

flagellar biosynthesis protein FliP

NC_011274
(Salmonella enterica 287/91)

1e-29

224) SBOV20391
( YP_008505882.1 )

flagellar biosynthetic protein FliP

NC_022241
(Salmonella enterica 3114)

1e-29

225) fliP
( YP_005397341.1 )

flagellar biosynthetic protein FliP

NC_017046
(Salmonella enterica 798)

1e-29

226) fliP
( YP_008481487.1 )

flagellar biosynthetic protein flip precursor

NC_022221
(Salmonella enterica CDC1983-67)

1e-29

227) fliP
( YP_008308242.1 )

flagellar biosynthesis protein FliP

NC_021844
(Salmonella enterica CFSAN000189)

1e-29

228) fliP
( YP_008254817.1 )

flagellar biosynthesis protein FliP

NC_021814
(Salmonella enterica CFSAN001921)

1e-29

229) fliP
( YP_007470075.1 )

flagellar biosynthesis protein FliP

NC_020307
(Salmonella enterica CFSAN001992)

1e-29

230) fliP
( YP_008261244.1 )

flagellar biosynthesis protein FliP

NC_021818
(Salmonella enterica CFSAN002050)

1e-29

231) STY2187
( NP_456540.1 )

flagellar biosynthetic protein FliP

NC_003198
(Salmonella enterica CT18)

1e-29

232) fliP
( YP_002215107.1 )

flagellar biosynthesis protein FliP

NC_011205
(Salmonella enterica CT_02021853)

1e-29

233) fliP
( YP_002115013.1 )

flagellar biosynthesis protein FliP

NC_011094
(Salmonella enterica CVM19633)

1e-29

234) STMMW_19591
( YP_005232998.1 )

flagellar biosynthetic protein FliP

NC_016854
(Salmonella enterica D23580)

1e-29

235) fliP
( NP_460932.1 )

flagellar biosynthesis protein FliP

NC_003197
(Salmonella enterica LT2)

1e-29

236) STBHUCCB_9660
( YP_005216542.1 )

Flagellar biosynthetic protein fliP

NC_016832
(Salmonella enterica P-stx-12)

1e-29

237) fliP
( YP_002243159.1 )

flagellar biosynthesis protein FliP

NC_011294
(Salmonella enterica P125109)

1e-29

238) fliP
( YP_002637320.1 )

flagellar biosynthesis protein FliP

NC_012125
(Salmonella enterica RKS4594)

1e-29

239) fliP
( YP_005213029.1 )

flagellar biosynthetic protein flip precursor

NC_016831
(Salmonella enterica RKS5078)

1e-29

240) fliP
( YP_001570011.1 )

flagellar biosynthesis protein FliP

NC_010067
(Salmonella enterica RSK2980)

1e-29

241) fliP
( YP_008381167.1 )

flagellar biosynthesis protein FliP

NC_021984
(Salmonella enterica S06004)

1e-29

242) fliP
( YP_216971.1 )

flagellar biosynthesis protein FliP

NC_006905
(Salmonella enterica SC-B67)

1e-29

243) fliP
( YP_001587417.1 )

flagellar biosynthesis protein FliP

NC_010102
(Salmonella enterica SGSC4150; SPB7)

1e-29

244) fliP
( YP_005181802.1 )

flagellar biosynthetic protein FliP

NC_016810
(Salmonella enterica SL1344)

1e-29

245) fliP
( YP_002041244.1 )

flagellar biosynthesis protein FliP

NC_011080
(Salmonella enterica SL254)

1e-29

246) fliP
( YP_002146044.1 )

flagellar biosynthesis protein FliP

NC_011149
(Salmonella enterica SL483)

1e-29

247) fliP
( YP_005242887.1 )

flagellar biosynthesis protein FliP

NC_016857
(Salmonella enterica ST4/74)

1e-29

248) fliP
( YP_005247696.1 )

flagellar biosynthesis protein FliP

NC_016860
(Salmonella enterica T000240)

1e-29

249) fliP
( NP_804727.1 )

flagellar biosynthesis protein FliP

NC_004631
(Salmonella enterica Ty2)

1e-29

250) fliP
( YP_007925244.1 )

flagellar biosynthesis protein FliP

NC_021176
(Salmonella enterica Ty21a)

1e-29

251) fliP
( YP_007902356.1 )

flagellar biosynthesis protein FliP

NC_021151
(Salmonella enterica U288)

1e-29

252) fliP
( YP_005252485.1 )

flagellar biosynthesis protein FliP

NC_016863
(Salmonella enterica UK-1)

1e-29

253) SN31241_30780
( YP_008360994.1 )

Flagellar biosynthetic protein fliP

NC_021902
(Salmonella enterica USMARC-S3124.1)

1e-29

254) COB47_1938
( YP_003841191.1 )

flagellar biosynthetic protein FliP

NC_014392
(Caldicellulosiruptor obsidiansis OB47)

1e-29

255) fliP
( YP_008104325.1 )

flagellar biosynthesis protein FliP

NC_021499
(Pseudomonas resinovorans NBRC 106553)

1e-29

256) Entas_2744
( YP_004829256.1 )

flagellar biosynthetic protein FliP

NC_015968
(Enterobacter asburiae LF7a)

2e-29

257) fliP
( YP_008247887.1 )

flagellar biosynthesis protein FliP

NC_021810
(Salmonella enterica 41578)

2e-29

258) SU5_02582
( YP_006088206.1 )

Flagellar biosynthesis protein FliP

NC_017623
(Salmonella enterica B182)

2e-29

259) fliP
( YP_008253121.1 )

flagellar biosynthesis protein FliP

NC_021812
(Salmonella enterica CFSAN002069)

2e-29

260) fliP
( YP_002046030.1 )

flagellar biosynthesis protein FliP

NC_011083
(Salmonella enterica SL476)

2e-29

261) fliP
( YP_008112706.1 )

flagellar biosynthesis protein FliP

NC_021505
(Pseudomonas putida NBRC 14164)

2e-29

262) fliP
( YP_574016.1 )

flagellar biosynthesis protein FliP

NC_007963
(Chromohalobacter salexigens DSM 3043)

2e-29

263) Dd586_1882
( YP_003333446.1 )

Yop virulence translocation R

NC_013592
(Dickeya dadantii Ech586)

2e-29

264) A3UG_14735
( YP_006478375.1 )

Flagellar biosynthetic protein FliP

NC_018079
(Enterobacter cloacae SDM)

2e-29

265) PC1_2212
( YP_003017787.1 )

Yop virulence translocation R

NC_012917
(Pectobacterium carotovorum PC1)

2e-29

266) PCC21_022910
( YP_006646947.1 )

type III secretion system protein

NC_018525
(Pectobacterium carotovorum PCC21)

2e-29

267) fliP
( YP_008106948.1 )

flagellar biosynthesis protein FliP

NC_021500
(Enterobacter sp. R4-368)

3e-29

268) fliP
( YP_001177259.1 )

flagellar biosynthesis protein FliP

NC_009436
(Enterobacter sp. 638)

3e-29

269) fliP
( YP_001458737.1 )

flagellar biosynthesis protein FliP

NC_009800
(Escherichia coli HS)

3e-29

270) S70_18345
( YP_006218162.1 )

flagellar biosynthesis protein FliP

NC_017731
(Providencia stuartii MRSN 2154)

3e-29

271) Calhy_0599
( YP_003991709.1 )

flagellar biosynthetic protein flip

NC_014652
(Caldicellulosiruptor hydrothermalis 108)

3e-29

272) Calkr_0422
( YP_004025586.1 )

flagellar biosynthetic protein flip

NC_014721
(Caldicellulosiruptor kristjanssonii 177R1B)

3e-29

273) Calkro_0478
( YP_004023197.1 )

flagellar biosynthetic protein flip

NC_014720
(Caldicellulosiruptor kronotskyensis 2002)

3e-29

274) Calla_1939
( YP_004799490.1 )

flagellar biosynthetic protein FliP

NC_015949
(Caldicellulosiruptor lactoaceticus 6A)

3e-29

275) fliP
( YP_003211028.1 )

flagellar biosynthetic protein fliP

NC_013282
(Cronobacter turicensis z3032)

3e-29

276) Toce_1113
( YP_003825497.1 )

flagellar biosynthetic protein FliP

NC_014377
(Thermosediminibacter oceani DSM 16646)

3e-29

277) Athe_2157
( YP_002574005.1 )

flagellar biosynthetic protein FliP

NC_012034
(Caldicellulosiruptor bescii DSM 6725)

4e-29

278) ENC_42160
( YP_007847461.1 )

flagellar biosynthetic protein FliP

NC_021046
(Enterobacter cloacae NCTC 9394)

4e-29

279) fliP
( YP_001437348.1 )

flagellar biosynthesis protein FliP

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

4e-29

280) fliP
( YP_006579300.1 )

flagellar biosynthesis protein FliP

NC_018405
(Enterobacter cloacae ENHKU01)

4e-29

281) fliP
( YP_006342565.1 )

flagellar biosynthesis protein FliP

NC_017933
(Cronobacter sakazakii ES15)

4e-29

282) CSSP291_05910
( YP_007440068.1 )

flagellar biosynthesis protein FliP

NC_020260
(Cronobacter sakazakii Sp291)

4e-29

283) D782_1687
( YP_007339871.1 )

flagellar biosynthetic protein FliP

NC_020063
(Enterobacteriaceae bacterium FGI 57)

5e-29

284) SerAS9_3041
( YP_004506421.1 )

flagellar biosynthetic protein FliP

NC_015567
(Serratia plymuthica AS9)

5e-29

285) SerAS12_3042
( YP_004501468.1 )

flagellar biosynthetic protein FliP

NC_015566
(Serratia sp. AS12)

5e-29

286) SerAS13_3044
( YP_006025883.1 )

flagellar biosynthetic protein FliP

NC_017573
(Serratia sp. AS13)

5e-29

287) fliP
( NP_707833.3 )

flagellar biosynthesis protein

NC_004337
(Shigella flexneri 301)

6e-29

288) fliP
( YP_008138959.1 )

flagellar biosynthetic protein flip

NC_021591
(Serratia odorifera 4Rx13)

6e-29

289) fliP
( YP_008159817.1 )

flagellar biosynthesis protein FliP

NC_021659
(Serratia plymuthica S13)

6e-29

290) fliP
( YP_066407.1 )

flagellar biosynthesis protein FliP

NC_006138
(Desulfotalea psychrophila LSv54)

6e-29

291) fliP
( YP_001907927.1 )

flagellar biosynthesis protein FliP

NC_010694
(Erwinia tasmaniensis Et1/99)

6e-29

292) fliP
( YP_006096412.1 )

flagellar biosynthetic protein FliP

NC_017626
(Escherichia coli 042)

7e-29

293) fliP
( YP_003234943.1 )

flagellar biosynthesis protein FliP

NC_013364
(Escherichia coli 11128)

7e-29

294) fliP
( YP_003229814.1 )

flagellar biosynthesis protein FliP

NC_013361
(Escherichia coli 11368)

7e-29

295) fliP
( YP_003222125.1 )

flagellar biosynthesis protein FliP

NC_013353
(Escherichia coli 12009)

7e-29

296) fliP
( YP_006769620.1 )

flagellar biosynthesis protein FliP

NC_018650
(Escherichia coli 2009EL-2050)

7e-29

297) fliP
( YP_006783745.1 )

flagellar biosynthesis protein FliP

NC_018661
(Escherichia coli 2009EL-2071)

7e-29

298) fliP
( YP_006778674.1 )

flagellar biosynthesis protein FliP

NC_018658
(Escherichia coli 2011C-3493)

7e-29

299) fliP
( YP_669784.1 )

flagellar biosynthesis protein FliP

NC_008253
(Escherichia coli 536)

7e-29

300) fliP
( YP_002403220.1 )

flagellar biosynthesis protein FliP

NC_011748
(Escherichia coli 55989)

7e-29

301) fliP
( YP_006106267.1 )

flagellar biosynthetic protein FliP

NC_017631
(Escherichia coli ABU 83972)

7e-29

302) fliP
( YP_007381879.1 )

flagellar biosynthesis protein FliP

NC_020163
(Escherichia coli APEC O78)

7e-29

303) fliP
( YP_001724673.1 )

flagellar biosynthesis protein FliP

NC_010468
(Escherichia coli ATCC 8739)

7e-29

304) fliP
( YP_003499943.1 )

flagellar biosynthetic protein fliP precursor

NC_013941
(Escherichia coli CB9615)

7e-29

305) fliP
( YP_006144296.1 )

flagellar biosynthesis protein

NC_017646
(Escherichia coli CE10)

7e-29

306) fliP
( NP_754257.1 )

flagellar biosynthesis protein FliP

NC_004431
(Escherichia coli CFT073)

7e-29

307) fliP
( YP_006154289.1 )

flagellar biosynthesis protein FliP

NC_017652
(Escherichia coli clone D i14)

7e-29

308) fliP
( YP_006149370.1 )

flagellar biosynthesis protein FliP

NC_017651
(Escherichia coli clone D i2)

7e-29

309) EcDH1_1700
( YP_006091650.1 )

flagellar biosynthetic protein FliP

NC_017625
(Escherichia coli DH1)

7e-29

310) fliP
( YP_006129289.1 )

flagellar biosynthetic protein fliP precursor

NC_017638
(Escherichia coli DH1)

7e-29

311) fliP
( YP_001463250.1 )

flagellar biosynthesis protein FliP

NC_009801
(Escherichia coli E24377A)

7e-29

312) fliP
( YP_002271065.1 )

flagellar biosynthesis protein FliP

NC_011353
(Escherichia coli EC4115)

7e-29

313) fliP
( YP_002398155.1 )

flagellar biosynthesis protein FliP

NC_011745
(Escherichia coli ED1a)

7e-29

314) fliP
( NP_288409.1 )

flagellar biosynthesis protein FliP

NC_002655
(Escherichia coli EDL933)

7e-29

315) fliP
( YP_003035934.1 )

flagellar biosynthesis protein FliP

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

7e-29

316) ETEC_2051
( YP_006115617.1 )

flagellar biosynthetic protein FliP

NC_017633
(Escherichia coli ETEC H10407)

7e-29

317) fliP
( YP_002387441.1 )

flagellar biosynthesis protein FliP

NC_011741
(Escherichia coli IAI1)

7e-29

318) fliP
( YP_002407120.1 )

flagellar biosynthesis protein FliP

NC_011750
(Escherichia coli IAI39)

7e-29

319) fliP
( YP_001730912.1 )

flagellar biosynthesis protein FliP

NC_010473
(Escherichia coli K-12)

7e-29

320) fliP
( YP_002926949.1 )

flagellar biosynthesis protein FliP

NC_012759
(Escherichia coli K-12)

7e-29

321) fliP
( YP_490202.1 )

flagellar biosynthesis protein

NC_007779
(Escherichia coli K-12)

7e-29

322) fliP
( NP_416458.1 )

flagellar biosynthesis protein

NC_000913
(Escherichia coli K12)

7e-29

323) EKO11_1826
( YP_005277507.1 )

flagellar biosynthetic protein FliP

NC_016902
(Escherichia coli KO11FL)

7e-29

324) fliP
( YP_006164919.1 )

flagellar biosynthesis protein FliP

NC_017660
(Escherichia coli KO11FL)

7e-29

325) fliP
( YP_002556821.1 )

flagellar biosynthetic protein fliP

NC_011993
(Escherichia coli LF82)

7e-29

326) fliP
( YP_008565120.1 )

flagellar biosynthesis protein FliP

NC_022364
(Escherichia coli LY180)

7e-29

327) fliP
( YP_006139128.1 )

Flagellar biosynthesis protein

NC_017644
(Escherichia coli NA114)

7e-29

328) fliP
( YP_006120302.1 )

flagellar biosynthesis protein FliP

NC_017634
(Escherichia coli NRG 857C)

7e-29

329) fliP
( YP_006168111.1 )

Flagellar biosynthetic protein FliP precursor

NC_017663
(Escherichia coli P12b)

7e-29

330) fliP
( YP_006159446.1 )

flagellar biosynthesis protein FliP

NC_017656
(Escherichia coli RM12579)

7e-29

331) fliP
( NP_310714.1 )

flagellar biosynthesis protein FliP

NC_002695
(Escherichia coli Sakai)

7e-29

332) fliP
( YP_002293454.1 )

flagellar biosynthesis protein FliP

NC_011415
(Escherichia coli SE11)

7e-29

333) ECSF_1800
( YP_003349790.1 )

flagellar biosynthetic protein FliP

NC_013654
(Escherichia coli SE15)

7e-29

334) fliP
( YP_001743297.1 )

flagellar biosynthesis protein FliP

NC_010498
(Escherichia coli SMS-3-5)

7e-29

335) fliP
( YP_003078435.1 )

flagellar biosynthesis protein FliP

NC_013008
(Escherichia coli TW14359)

7e-29

336) fliP
( YP_002412960.1 )

flagellar biosynthesis protein FliP

NC_011751
(Escherichia coli UMN026)

7e-29

337) fliP
( YP_006124817.1 )

flagellar biosynthesis protein

NC_017635
(Escherichia coli W)

7e-29

338) fliP
( YP_006173528.1 )

flagellar biosynthesis protein FliP

NC_017664
(Escherichia coli W)

7e-29

339) fliP
( YP_006313351.1 )

flagellar biosynthesis protein FliP

NC_017906
(Escherichia coli Xuzhou21)

7e-29

340) fliP
( YP_001879727.1 )

flagellar biosynthesis protein FliP

NC_010658
(Shigella boydii CDC 3083-94)

7e-29

341) fliP
( YP_689437.1 )

flagellar biosynthesis protein FliP

NC_008258
(Shigella flexneri 8401)

7e-29

342) fliP
( YP_003365583.1 )

flagellar biosynthetic protein FliP

NC_013716
(Citrobacter rodentium ICC168)

7e-29

343) fliP
( YP_004593337.1 )

flagellar biosynthesis protein FliP

NC_015663
(Enterobacter aerogenes KCTC 2190)

7e-29

344) fliP
( YP_008230983.1 )

flagellar biosynthesis protein FliP

NC_021741
(Serratia liquefaciens ATCC 27592)

8e-29

345) fliP
( YP_003496926.1 )

flagellar transport protein FliP

NC_013939
(Deferribacter desulfuricans SSM1)

1e-28

346) fliP
( YP_002329579.1 )

flagellar biosynthesis protein FliP

NC_011601
(Escherichia coli E2348/69)

1e-28

347) fliP
( YP_002383064.1 )

flagellar biosynthesis protein FliP

NC_011740
(Escherichia fergusonii ATCC 35469)

1e-28

348) mlr8766
( NP_106869.1 )

type III secretion system protein

NC_002678
(Mesorhizobium loti MAFF303099)

1e-28

349) fliP
( YP_002141671.1 )

flagellar biosynthesis protein FliP

NC_011147
(Salmonella enterica AKU12601)

1e-28

350) fliP
( YP_150183.1 )

flagellar biosynthetic protein FliP

NC_006511
(Salmonella enterica ATCC 9150)

1e-28

351) fliP
( YP_007406771.1 )

flagellar biosynthetic protein FliP

NC_020211
(Serratia marcescens WW4)

1e-28

352) ST548_p6298
( YP_007388300.1 )

Flagellar biosynthesis protein FliP

NC_020181
(Enterobacter aerogenes EA1509E)

1e-28

353) D781_2730
( YP_007345166.1 )

flagellar biosynthetic protein FliP

NC_020064
(Serratia marcescens FGI94)

1e-28

354) fliP
( YP_853001.1 )

flagellar biosynthesis protein FliP

NC_008563
(Escherichia coli APEC O1)

8e-29

355) fliP
( YP_006101245.1 )

flagellar biosynthetic protein FliP

NC_017628
(Escherichia coli IHE3034)

8e-29

356) fliP
( YP_008571879.1 )

Flagellar biosynthetic protein fliP precursor

NC_022370
(Escherichia coli PMV-1)

8e-29

357) fliP
( YP_002391718.1 )

flagellar biosynthesis protein FliP

NC_011742
(Escherichia coli S88)

8e-29

358) fliP
( YP_006110392.1 )

flagellar biosynthesis protein FliP

NC_017632
(Escherichia coli UM146)

8e-29

359) fliP
( YP_541152.1 )

flagellar biosynthesis protein FliP

NC_007946
(Escherichia coli UTI89)

8e-29

360) fliP
( YP_006134171.1 )

flagellar biosynthetic protein FliP

NC_017641
(Escherichia coli UMNK88)

2e-28

361) fliP
( YP_005456910.1 )

flagellar biosynthesis protein FliP

NC_016822
(Shigella sonnei 53G)

2e-28

362) fliP
( YP_310907.1 )

flagellar biosynthesis protein FliP

NC_007384
(Shigella sonnei Ss046)

2e-28

363) fliP
( YP_001479186.1 )

flagellar biosynthesis protein FliP

NC_009832
(Serratia proteamaculans 568)

3e-28

364) fliP
( YP_001470257.1 )

flagellar biosynthesis protein FliP

NC_009828
(Thermotoga lettingae TMO)

4e-28

365) spaP
( YP_002152389.1 )

surface presentation of antigens protein SpaP

NC_010554
(Proteus mirabilis HI4320)

1e-27

366) fliP
( YP_455736.1 )

flagellar biosynthesis protein FliP

NC_007712
(Sodalis glossinidius morsitans)

1e-27

367) fliP
( NP_992929.2 )

flagellar biosynthesis protein FliP

NC_005810
(Yersinia pestis 91001)

1e-27

368) fliP
( YP_005522991.1 )

flagellar biosynthesis protein FliP

NC_017168
(Yersinia pestis A1122)

1e-27

369) fliP
( YP_651108.2 )

flagellar biosynthesis protein FliP

NC_008150
(Yersinia pestis Antiqua)

1e-27

370) fliP
( YP_002346816.1 )

flagellar biosynthesis protein FliP

NC_003143
(Yersinia pestis CO92)

1e-27

371) fliP
( YP_005504825.1 )

flagellar biosynthesis protein

NC_017154
(Yersinia pestis D106004)

1e-27

372) fliP
( YP_005509013.1 )

flagellar biosynthesis protein

NC_017160
(Yersinia pestis D182038)

1e-27

373) fliP
( YP_005624300.1 )

flagellar biosynthetic protein FliP

NC_017265
(Yersinia pestis Harbin 35)

1e-27

374) fliP
( NP_669792.2 )

flagellar biosynthesis protein FliP

NC_004088
(Yersinia pestis KIM)

1e-27

375) fliP
( YP_648231.2 )

flagellar biosynthesis protein FliP

NC_008149
(Yersinia pestis Nepal516)

1e-27

376) fliP
( YP_001162668.1 )

flagellar biosynthesis protein FliP

NC_009381
(Yersinia pestis Pestoides F)

1e-27

377) fliP
( YP_003568075.1 )

flagellar biosynthesis protein

NC_014029
(Yersinia pestis Z176003)

1e-27

378) fliP
( YP_001401271.1 )

flagellar biosynthesis protein FliP

NC_009708
(Yersinia pseudotuberculosis IP 31758)

1e-27

379) fliP
( YP_070220.2 )

flagellar biosynthesis protein FliP

NC_006155
(Yersinia pseudotuberculosis IP 32953)

1e-27

380) fliP
( YP_001872246.1 )

flagellar biosynthesis protein FliP

NC_010634
(Yersinia pseudotuberculosis PB1/+)

1e-27

381) fliP
( YP_001721132.1 )

flagellar biosynthesis protein FliP

NC_010465
(Yersinia pseudotuberculosis YPIII)

1e-27

382) rhcR
( NP_444164.1 )

type III secretion system protein

NC_000914
(Sinorhizobium fredii NGR234)

5e-28

383) fliP
( YP_001306175.1 )

flagellar biosynthesis protein FliP

NC_009616
(Thermosipho melanesiensis BI429)

7e-28

384) spaP
( YP_002924278.1 )

surface presentation of antigens protein SpaP

NC_012751
(Candidatus Hamiltonella defensa T5A)

1e-27

385) Pat9b_2399
( YP_004116257.1 )

flagellar biosynthetic protein FliP

NC_014837
(Pantoea sp. At-9b)

2e-27

386) YE105_C1710
( YP_004297909.1 )

flagellar biosynthesis protein FliP

NC_015224
(Yersinia enterocolitica 105.5R(r))

2e-27

387) fliP
( YP_001006751.1 )

flagellar biosynthesis protein FliP

NC_008800
(Yersinia enterocolitica 8081)

2e-27

388) Y11_14301
( YP_006004929.1 )

flagellar biosynthesis protein FliP

NC_017564
(Yersinia enterocolitica Y11)

2e-27

389) spaP
( YP_008399203.1 )

surface presentation of antigens protein SpaP

NC_022000
(Proteus mirabilis BB2000)

3e-27

390) fliP
( YP_002535429.1 )

flagellar biosynthesis protein FliP

NC_011978
(Thermotoga neapolitana DSM 4359)

4e-27

391) Theth_0696
( YP_004659877.1 )

flagellar biosynthetic protein FliP

NC_015707
(Thermotoga thermarum DSM 5069)

4e-27

392) Thein_0183
( YP_004625032.1 )

flagellar biosynthetic protein FliP

NC_015681
(Thermodesulfatator indicus DSM 15286)

1e-26

393) spaP
( YP_001007698.1 )

surface presentation of antigens protein SpaP

NC_008800
(Yersinia enterocolitica 8081)

9e-27

394) fliP
( YP_049816.1 )

flagellar biosynthesis protein FliP

NC_004547
(Pectobacterium atrosepticum SCRI1043)

5e-26

395) fliP
( NP_902797.1 )

flagellar biosynthesis protein FliP

NC_005085
(Chromobacterium violaceum ATCC 12472)

1e-25

396) Halha_0669
( YP_007314735.1 )

flagellar biosynthetic protein FliP

NC_019978
(Halobacteroides halobius DSM 5150)

2e-25

397) W5S_1792
( YP_006282755.1 )

Flagellar biosynthetic protein FliP

NC_017845
(Pectobacterium sp. SCC3193)

8e-26

398) fliP
( YP_004589901.1 )

type III protein exporter membrane protein

NC_015662
(Buchnera aphidicola host: Cinara tujafilina)

2e-25

399) fliP
( YP_001920217.1 )

flagellar biosynthetic protein FliP

NC_010723
(Clostridium botulinum Alaska E43)

6e-25

400) fliP
( YP_001885056.1 )

flagellar biosynthetic protein FliP

NC_010674
(Clostridium botulinum Eklund 17B)

1e-24

401) Thebr_1270
( YP_004186227.1 )

flagellar biosynthetic protein FliP

NC_014964
(Thermoanaerobacter brockii Ako-1)

6e-25

402) fliP
( YP_001665231.1 )

flagellar biosynthesis protein FliP

NC_010321
(Thermoanaerobacter pseudethanolicus ATCC 33223)

6e-25

403) ETEC_3055
( YP_006116602.1 )

type III secretion system protein

NC_017633
(Escherichia coli ETEC H10407)

7e-25

404) fliP
( YP_004467968.1 )

flagellar biosynthesis protein FliP

NC_015554
(Alteromonas sp. SN2)

1e-24

405) B649_04650
( YP_007527939.1 )

hypothetical protein

NC_020505
(uncultured Sulfuricurvum sp. RIFRC-1)

1e-24

406) Thewi_1381
( YP_004820087.1 )

flagellar biosynthetic protein FliP

NC_015958
(Thermoanaerobacter wiegelii Rt8.B1)

1e-24

407) fliP
( YP_006747081.1 )

flagellar biosynthesis protein FliP

NC_018632
(Alteromonas macleodii ATCC 27126)

2e-24

408) fliP
( YP_006824044.1 )

flagellar biosynthesis protein FliP

NC_018692
(Alteromonas macleodii Black Sea 11)

2e-24

409) fliP
( YP_006798070.1 )

flagellar biosynthesis protein FliP

NC_018678
(Alteromonas macleodii English Channel 673)

2e-24

410) Sulku_1113
( YP_004059976.1 )

flagellar biosynthetic protein flip

NC_014762
(Sulfuricurvum kujiense DSM 16994)

2e-24

411) Acear_1628
( YP_003828199.1 )

flagellar biosynthetic protein FliP

NC_014378
(Acetohalobium arabaticum DSM 5501)

2e-24

412) fliP
( YP_003516248.1 )

flagellar biosynthesis protein

NC_013949
(Helicobacter mustelae 12198)

3e-24

413) fliP
( YP_001466589.1 )

flagellar biosynthesis protein FliP

NC_009802
(Campylobacter concisus 13826)

3e-24

414) fliP
( YP_002955997.1 )

flagellar biosynthesis protein FliP

NC_012796
(Desulfovibrio magneticus RS-1)

3e-24

415) fliP
( YP_006801984.1 )

flagellar biosynthesis protein FliP

NC_018679
(Alteromonas macleodii Balearic Sea AD45)

3e-24

416) Clole_2443
( YP_004309347.1 )

flagellar biosynthetic protein FliP

NC_015275
(Clostridium lentocellum DSM 5427)

3e-24

417) Thit_1219
( YP_003477045.1 )

flagellar biosynthetic protein FliP

NC_013921
(Thermoanaerobacter italicus Ab9)

3e-24

418) Tmath_1270
( YP_003676996.1 )

flagellar biosynthetic protein FliP

NC_014209
(Thermoanaerobacter mathranii A3)

3e-24

419) fliP
( YP_007545115.1 )

flagellar biosynthesis protein FliP

NC_020514
(Glaciecola psychrophila 170)

3e-24

420) fliP
( YP_006975941.1 )

flagellar biosynthesis protein FliP

NC_019393
(Alteromonas macleodii AltDE1)

4e-24

421) MADE_1005950
( YP_004426330.1 )

flagellar biosynthesis protein FliP

NC_011138
(Alteromonas macleodii Deep ecotype)

4e-24

422) fliP
( YP_008191968.1 )

flagellar biosynthesis protein FliP

NC_021716
(Alteromonas macleodii English Channel 615)

4e-24

423) fliP
( YP_008171083.1 )

flagellar biosynthesis protein FliP

NC_021710
(Alteromonas macleodii Ionian Sea U4)

4e-24

424) fliP
( YP_008195492.1 )

flagellar biosynthesis protein FliP

NC_021717
(Alteromonas macleodii Ionian Sea U7)

4e-24

425) fliP
( YP_008175213.1 )

flagellar biosynthesis protein FliP

NC_021712
(Alteromonas macleodii Ionian Sea U8)

4e-24

426) fliP
( YP_008183049.1 )

flagellar biosynthesis protein FliP

NC_021714
(Alteromonas macleodii Ionian Sea UM4b)

4e-24

427) fliP
( YP_008178996.1 )

flagellar biosynthesis protein FliP

NC_021713
(Alteromonas macleodii Ionian Sea UM7)

4e-24

428) fliP
( YP_393530.1 )

flagellar biosynthesis protein FliP

NC_007575
(Sulfurimonas denitrificans ATCC 33889)

4e-24

429) fliP
( NP_348768.1 )

flagellar biosynthesis protein FliP

NC_003030
(Clostridium acetobutylicum ATCC 824)

6e-24

430) fliP
( YP_004636814.1 )

flagellar biosynthesis protein FliP

NC_015687
(Clostridium acetobutylicum DSM 1731)

6e-24

431) fliP
( YP_005671296.1 )

flagellar biosynthesis protein FliP

NC_017295
(Clostridium acetobutylicum EA 2018)

6e-24

432) spaP
( YP_002143407.1 )

surface presentation of antigens protein SpaP

NC_011147
(Salmonella enterica AKU12601)

7e-24

433) spaP
( YP_151917.1 )

secretory protein (associated with virulence)

NC_006511
(Salmonella enterica ATCC 9150)

7e-24

434) fliP
( YP_002729321.1 )

flagellar biosynthetic protein FliP

NC_012438
(Sulfurihydrogenibium azorense Az-Fu1)

9e-24

435) A464_2914
( YP_008323508.1 )

Type III secretion inner membrane protein

NC_021870
(Salmonella bongori N268-08)

1e-23

436) spaP
( YP_004731330.1 )

virulence associated secretory protein

NC_015761
(Salmonella bongori NCTC 12419)

1e-23

437) spaP
( NP_457284.1 )

secretory protein (associated with virulence)

NC_003198
(Salmonella enterica CT18)

1e-23

438) STBHUCCB_29360
( YP_005218436.1 )

Surface presentation of antigens protein spaP

NC_016832
(Salmonella enterica P-stx-12)

1e-23

439) spaP
( NP_806493.1 )

surface presentation of antigens protein SpaP

NC_004631
(Salmonella enterica Ty2)

1e-23

440) spaP
( YP_007927063.1 )

surface presentation of antigens protein SpaP

NC_021176
(Salmonella enterica Ty21a)

1e-23

441) fliP
( YP_007640886.1 )

flagellar biosynthesis protein FliP

NC_020802
(Psychromonas sp. CNPT3)

2e-23

442) SE451236_20545
( YP_008267096.1 )

type III secretion system protein

NC_021820
(Salmonella enterica 08-1736)

2e-23

443) spaP
( YP_005238999.1 )

surface presentation of antigens protein SpaP

NC_016856
(Salmonella enterica 14028S)

2e-23

444) spaP
( YP_002227634.1 )

surface presentation of antigens protein SpaP

NC_011274
(Salmonella enterica 287/91)

2e-23

445) SBOV29161
( YP_008506738.1 )

hypothetical protein

NC_022241
(Salmonella enterica 3114)

2e-23

446) spaP
( YP_008248698.1 )

type III secretion system protein SpaP

NC_021810
(Salmonella enterica 41578)

2e-23

447) spaP
( YP_005398253.1 )

type III secretion system secretory apparatus

NC_017046
(Salmonella enterica 798)

2e-23

448) SU5_03371
( YP_006088978.1 )

Type III secretion inner membrane protein

NC_017623
(Salmonella enterica B182)

2e-23

449) spaP
( YP_008482453.1 )

secretory protein

NC_022221
(Salmonella enterica CDC1983-67)

2e-23

450) SEEB0189_05720
( YP_008307495.1 )

type III secretion system protein

NC_021844
(Salmonella enterica CFSAN000189)

2e-23

451) CFSAN001921_02625
( YP_008253933.1 )

type III secretion system protein

NC_021814
(Salmonella enterica CFSAN001921)

2e-23

452) spaP
( YP_007473531.1 )

type III secretion system protein SpaP

NC_020307
(Salmonella enterica CFSAN001992)

2e-23

453) CFSAN002050_20750
( YP_008262021.1 )

type III secretion system protein

NC_021818
(Salmonella enterica CFSAN002050)

2e-23

454) CFSAN002069_17820
( YP_008252324.1 )

type III secretion system protein

NC_021812
(Salmonella enterica CFSAN002069)

2e-23

455) spaP
( YP_002216859.1 )

surface presentation of antigens protein SpaP

NC_011205
(Salmonella enterica CT_02021853)

2e-23

456) spaP
( YP_002115842.1 )

surface presentation of antigens protein SpaP

NC_011094
(Salmonella enterica CVM19633)

2e-23

457) STMMW_28521
( YP_005233879.1 )

secretory protein (associated with virulence)

NC_016854
(Salmonella enterica D23580)

2e-23

458) spaP
( NP_461811.1 )

surface presentation of antigens protein SpaP

NC_003197
(Salmonella enterica LT2)

2e-23

459) spaP
( YP_002244803.1 )

surface presentation of antigens protein SpaP

NC_011294
(Salmonella enterica P125109)

2e-23

460) spaP
( YP_002638466.1 )

surface presentation of antigens protein SpaP

NC_012125
(Salmonella enterica RKS4594)

2e-23

461) spaP
( YP_005213998.1 )

secretory protein (associated with virulence)

NC_016831
(Salmonella enterica RKS5078)

2e-23

462) I137_13760
( YP_008382153.1 )

type III secretion system protein

NC_021984
(Salmonella enterica S06004)

2e-23

463) spaP
( YP_217809.1 )

surface presentation of antigens protein SpaP

NC_006905
(Salmonella enterica SC-B67)

2e-23

464) spaP
( YP_001589767.1 )

surface presentation of antigens protein SpaP

NC_010102
(Salmonella enterica SGSC4150; SPB7)

2e-23

465) spaP
( YP_005182758.1 )

type III secretion system secretory apparatus

NC_016810
(Salmonella enterica SL1344)

2e-23

466) spaP
( YP_002042131.1 )

surface presentation of antigens protein SpaP

NC_011080
(Salmonella enterica SL254)

2e-23

467) spaP
( YP_002046850.1 )

surface presentation of antigens protein SpaP

NC_011083
(Salmonella enterica SL476)

2e-23

468) spaP
( YP_002147787.1 )

surface presentation of antigens protein SpaP

NC_011149
(Salmonella enterica SL483)

2e-23

469) spaP
( YP_005243871.1 )

surface presentation of antigens protein SpaP

NC_016857
(Salmonella enterica ST4/74)

2e-23

470) spaP
( YP_005248635.1 )

surface presentation of antigens protein SpaP

NC_016860
(Salmonella enterica T000240)

2e-23

471) spaP
( YP_007904012.1 )

type III secretion system protein SpaP

NC_021151
(Salmonella enterica U288)

2e-23

472) spaP
( YP_005253379.1 )

surface presentation of antigens protein SpaP

NC_016863
(Salmonella enterica UK-1)

2e-23

473) SN31241_39820
( YP_008361897.1 )

Surface presentation of antigens protein spaP

NC_021902
(Salmonella enterica USMARC-S3124.1)

2e-23

474) spaP
( YP_002272331.1 )

surface presentation of antigens protein SpaP

NC_011353
(Escherichia coli EC4115)

2e-23

475) spaP
( NP_289422.1 )

surface presentation of antigens protein SpaP

NC_002655
(Escherichia coli EDL933)

2e-23

476) spaP
( NP_311752.1 )

surface presentation of antigens protein SpaP

NC_002695
(Escherichia coli Sakai)

2e-23

477) spaP
( YP_003079643.1 )

surface presentation of antigens protein SpaP

NC_013008
(Escherichia coli TW14359)

2e-23

478) spaP
( YP_006314345.1 )

surface presentation of antigens protein SpaP

NC_017906
(Escherichia coli Xuzhou21)

2e-23

479) spaP
( YP_001569178.1 )

surface presentation of antigens protein SpaP

NC_010067
(Salmonella enterica RSK2980)

2e-23

480) fliP
( YP_001036912.1 )

flagellar biosynthesis protein FliP

NC_009012
(Clostridium thermocellum ATCC 27405)

3e-23

481) Clo1313_1739
( YP_005688247.1 )

flagellar biosynthetic protein FliP

NC_017304
(Clostridium thermocellum DSM 1313)

3e-23

482) spaP
( YP_001459638.1 )

surface presentation of antigens protein SpaP

NC_009800
(Escherichia coli HS)

4e-23

483) fliP
( YP_006222976.1 )

flagellar biosynthesis protein FliP

NC_017737
(Helicobacter cetorum MIT 00-7128)

6e-23

484) fliP
( YP_006221253.1 )

flagellar biosynthesis protein FliP

NC_017735
(Helicobacter cetorum MIT 99-5656)

6e-23

485) Celf_0690
( YP_004452217.1 )

flagellar biosynthetic protein FliP

NC_015514
(Cellulomonas fimi ATCC 484)

6e-23

486) spaP
( YP_006145309.1 )

surface presentation of antigens protein SpaP

NC_017646
(Escherichia coli CE10)

6e-23

487) fliP
( YP_007705135.1 )

flagellar biosynthetic protein FliP

NC_020911
(Octadecabacter antarcticus 307)

8e-23

488) fliP
( YP_002993401.1 )

flagellar biosynthesis protein FliP

NC_012881
(Desulfovibrio salexigens DSM 2638)

1e-22

489) fliP
( YP_001141197.1 )

flagellar biosynthesis protein FliP

NC_009348
(Aeromonas salmonicida A449)

1e-22

490) fliP
( YP_007911862.1 )

flagellar biosynthesis protein FliP

NC_021171
(Bacillus sp. 1NLA3E)

1e-22

491) fliP
( YP_004918416.1 )

flagellar biosynthetic protein FliP Precursor

NC_016112
(Methylomicrobium alcaliphilum 20Z)

1e-22

492) fliP
( YP_005771256.1 )

flagellar biosynthesis protein FliP

NC_017361
(Helicobacter pylori SouthAfrica7)

2e-22

493) Desaci_3816
( YP_006468029.1 )

flagellar biosynthetic protein FliP

NC_018068
(Desulfosporosinus acidiphilus SJ4)

2e-22

494) fliP
( YP_004073913.1 )

flagellar biosynthesis protein

NC_014810
(Helicobacter felis ATCC 49179)

8e-23

495) SAR116_0822
( YP_003551149.1 )

flagellar biosynthetic protein FliP

NC_014010
(Candidatus Puniceispirillum marinum IMCC1322)

9e-23

496) fliP
( YP_005793034.1 )

flagellar biosynthetic protein

NC_017382
(Helicobacter pylori 51)

2e-22

497) HPOK113_0695
( YP_007536809.1 )

flagellar biosynthesis protein FliP

NC_020508
(Helicobacter pylori OK113)

2e-22

498) fliP
( YP_005786841.1 )

flagellar biosynthesis protein FliP

NC_017376
(Helicobacter pylori Santal49)

2e-22

499) fliP
( YP_005768321.1 )

flagellar biosynthesis protein FliP

NC_017359
(Helicobacter pylori Sat464)

2e-22

500) fliP
( YP_006225889.1 )

flagellar biosynthesis protein FliP

NC_017740
(Helicobacter pylori Shi169)

2e-22

501) fliP
( YP_001910157.1 )

flagellar biosynthesis protein FliP

NC_010698
(Helicobacter pylori Shi470)

2e-22

502) fliP
( YP_005763615.1 )

flagellar biosynthetic protein FliP

NC_017355
(Helicobacter pylori v225d)

2e-22

503) fliP
( YP_001499953.1 )

flagellar biosynthesis protein FliP

NC_009901
(Shewanella pealeana ATCC 700345)

2e-22

504) fliP
( YP_008330936.1 )

flagellar biosynthesis protein

NC_021878
(Arcobacter butzleri 7h1h)

2e-22

505) ABED_0941
( YP_005538468.1 )

flagellar biosynthesis protein FliP

NC_017187
(Arcobacter butzleri ED-1)

2e-22

506) fliP
( YP_001489924.1 )

flagellar biosynthesis protein FliP

NC_009850
(Arcobacter butzleri RM4018)

2e-22

507) fliP
( YP_005785311.1 )

flagellar biosynthetic protein FliP

NC_017375
(Helicobacter pylori 83)

2e-22

508) fliP
( YP_005775862.1 )

flagellar biosynthesis protein FliP

NC_017366
(Helicobacter pylori F32)

2e-22

509) K750_05710
( YP_007982491.1 )

flagellar biosynthesis protein FliP

NC_021217
(Helicobacter pylori UM037)

2e-22

510) fliP
( YP_005783661.1 )

Flagellar biosynthesis protein

NC_017374
(Helicobacter pylori 2017)

2e-22

511) fliP
( YP_005765193.1 )

Flagellar biosynthesis protein

NC_017357
(Helicobacter pylori 908)

2e-22

512) fliP
( YP_124071.1 )

flagellar biosynthesis protein FliP

NC_006368
(Legionella pneumophila Paris)

2e-22

513) Dbac_2731
( YP_003159223.1 )

flagellar biosynthetic protein FliP

NC_013173
(Desulfomicrobium baculatum DSM 4028)

2e-22

514) fliP
( YP_005762174.1 )

flagellar biosynthesis protein FliP

NC_017354
(Helicobacter pylori 52)

3e-22

515) fliP
( YP_007017196.1 )

flagellar biosynthesis protein FliP

NC_019560
(Helicobacter pylori Aklavik117)

3e-22

516) fliP
( YP_003057436.1 )

flagellar biosynthesis protein FliP

NC_012973
(Helicobacter pylori B38)

3e-22

517) fliP
( YP_005766806.1 )

flagellar biosynthesis protein FliP

NC_017358
(Helicobacter pylori Cuz20)

3e-22

518) fliP
( YP_005778930.1 )

flagellar biosynthesis protein FliP

NC_017368
(Helicobacter pylori F16)

3e-22

519) fliP
( YP_005774392.1 )

flagellar biosynthesis protein FliP

NC_017365
(Helicobacter pylori F30)

3e-22

520) fliP
( YP_005777421.1 )

flagellar biosynthesis protein FliP

NC_017367
(Helicobacter pylori F57)

3e-22

521) fliP
( YP_627409.1 )

flagellar biosynthesis protein FliP

NC_008086
(Helicobacter pylori HPAG1)

3e-22

522) fliP
( YP_005781967.1 )

flagellar biosynthesis protein FliP

NC_017372
(Helicobacter pylori India7)

3e-22

523) fliP
( YP_005772819.1 )

flagellar biosynthesis protein FliP

NC_017362
(Helicobacter pylori Lithuania75)

3e-22

524) HPOK310_0676
( YP_007538310.1 )

flagellar biosynthesis protein FliP

NC_020509
(Helicobacter pylori OK310)

3e-22

525) fliP
( YP_006228922.1 )

flagellar biosynthesis protein FliP

NC_017742
(Helicobacter pylori PeCan18)

3e-22

526) fliP
( YP_003926954.1 )

flagellar biosynthesis protein FliP

NC_014555
(Helicobacter pylori PeCan4)

3e-22

527) fliP
( YP_005788328.1 )

flagellar biosynthesis protein FliP

NC_017378
(Helicobacter pylori Puno120)

3e-22

528) fliP
( YP_005789888.1 )

flagellar biosynthesis protein FliP

NC_017379
(Helicobacter pylori Puno135)

3e-22

529) fliP
( YP_006227415.1 )

flagellar biosynthesis protein FliP

NC_017741
(Helicobacter pylori Shi112)

3e-22

530) fliP
( YP_006224302.1 )

flagellar biosynthesis protein FliP

NC_017739
(Helicobacter pylori Shi417)

3e-22

531) K747_07525
( YP_007979688.1 )

flagellar biosynthesis protein FliP

NC_021215
(Helicobacter pylori UM032)

3e-22

532) K751_03955
( YP_007983769.1 )

flagellar biosynthesis protein FliP

NC_021218
(Helicobacter pylori UM066)

3e-22

533) K748_00620
( YP_008336047.1 )

flagellar biosynthesis protein FliP

NC_021882
(Helicobacter pylori UM298)

3e-22

534) K749_02145
( YP_007980226.1 )

flagellar biosynthesis protein FliP

NC_021216
(Helicobacter pylori UM299)

3e-22

535) fliP
( NP_223343.1 )

flagellar biosynthesis protein FliP

NC_000921
(Helicobacter pylori J99)

3e-22

536) fliP
( YP_007018934.1 )

flagellar biosynthesis protein FliP

NC_019563
(Helicobacter pylori Aklavik86)

3e-22

537) fliP
( YP_005770013.1 )

flagellar biosynthetic protein FliP

NC_017360
(Helicobacter pylori 35A)

3e-22

538) fliP
( YP_006219372.1 )

flagellar biosynthesis protein FliP

NC_017733
(Helicobacter pylori HUP-B14)

3e-22

539) fliP
( YP_008471673.1 )

flagellar biosynthetic protein FliP

NC_022130
(Helicobacter pylori SouthAfrica20)

3e-22

540) fliP
( YP_664645.1 )

flagellar biosynthesis protein FliP

NC_008229
(Helicobacter acinonychis Sheeba)

4e-22

541) fliP
( YP_005780419.1 )

flagellar biosynthesis protein FliP

NC_017371
(Helicobacter pylori Gambia94/24)

4e-22

542) ECO111_3598
( YP_003235942.1 )

type III secretion protein EpaP

NC_013364
(Escherichia coli 11128)

4e-22

543) spaP
( YP_003230868.1 )

surface presentation of antigens protein SpaP

NC_013361
(Escherichia coli 11368)

4e-22

544) ECO103_3430
( YP_003223303.1 )

type III secretion protein EpaP

NC_013353
(Escherichia coli 12009)

4e-22

545) spaP
( YP_002388324.1 )

surface presentation of antigens protein SpaP

NC_011741
(Escherichia coli IAI1)

4e-22

546) EKO11_0869
( YP_005276581.1 )

Yop virulence translocation R

NC_016902
(Escherichia coli KO11FL)

4e-22

547) spaP
( YP_006164025.1 )

type III secretion system protein SpaP

NC_017660
(Escherichia coli KO11FL)

4e-22

548) LY180_14720
( YP_008566010.1 )

type III secretion system protein

NC_022364
(Escherichia coli LY180)

4e-22

549) spaP
( YP_002294401.1 )

surface presentation of antigens protein SpaP

NC_011415
(Escherichia coli SE11)

4e-22

550) spaP
( YP_002413881.1 )

surface presentation of antigens protein SpaP

NC_011751
(Escherichia coli UMN026)

4e-22

551) epaP
( YP_006125736.1 )

type III secretion system protein

NC_017635
(Escherichia coli W)

4e-22

552) spaP
( YP_006174476.1 )

type III secretion system protein SpaP

NC_017664
(Escherichia coli W)

4e-22

553) fliP
( YP_001787969.1 )

flagellar biosynthesis protein FliP

NC_010520
(Clostridium botulinum Loch Maree)

5e-22

554) fliP
( YP_001782265.1 )

flagellar biosynthesis protein FliP

NC_010516
(Clostridium botulinum Okra)

5e-22

555) epaP
( YP_006097359.1 )

type III secretion system protein

NC_017626
(Escherichia coli 042)

5e-22

556) spaP
( YP_006768713.1 )

type III secretion system protein SpaP

NC_018650
(Escherichia coli 2009EL-2050)

5e-22

557) spaP
( YP_006782820.1 )

type III secretion system protein SpaP

NC_018661
(Escherichia coli 2009EL-2071)

5e-22

558) spaP
( YP_006777750.1 )

type III secretion system protein SpaP

NC_018658
(Escherichia coli 2011C-3493)

5e-22

559) spaP
( YP_002404126.1 )

surface presentation of antigens protein SpaP

NC_011748
(Escherichia coli 55989)

5e-22

560) spaP
( YP_007382760.1 )

type III secretion system protein SpaP

NC_020163
(Escherichia coli APEC O78)

5e-22

561) spaP
( YP_001464197.1 )

surface presentation of antigens protein SpaP

NC_009801
(Escherichia coli E24377A)

6e-22

562) H04402_02743
( YP_005679281.1 )

flagellar biosynthesis protein FliP

NC_017299
(Clostridium botulinum H04402 065)

7e-22

563) fliP
( YP_001676432.1 )

flagellar biosynthesis protein FliP

NC_010334
(Shewanella halifaxensis HAW-EB4)

7e-22

564) fliP
( YP_002863640.1 )

flagellar biosynthesis protein FliP

NC_012658
(Clostridium botulinum 657)

8e-22

565) fliP
( YP_001384893.1 )

flagellar biosynthesis protein FliP

NC_009697
(Clostridium botulinum ATCC 19397)

8e-22

566) fliP
( YP_001255147.1 )

flagellar biosynthesis protein FliP

NC_009495
(Clostridium botulinum ATCC 3502)

8e-22

567) fliP
( YP_001388362.1 )

flagellar biosynthesis protein FliP

NC_009698
(Clostridium botulinum Hall)

8e-22

568) fliP
( YP_002805152.1 )

flagellar biosynthesis protein FliP

NC_012563
(Clostridium botulinum Kyoto)

8e-22

569) BN341_p1310
( YP_007043253.1 )

Flagellar biosynthesis protein FliP

NC_019674
(Helicobacter heilmannii ASB1.4)

2e-21

570) spaP
( YP_001723845.1 )

surface presentation of antigens protein SpaP

NC_010468
(Escherichia coli ATCC 8739)

2e-21

571) Hipma_0871
( YP_004339900.1 )

flagellar biosynthetic protein FliP

NC_015318
(Hippea maritima DSM 10411)

2e-21

572) fliP
( YP_001250540.1 )

flagellar biosynthesis protein FliP

NC_009494
(Legionella pneumophila Corby)

3e-21

573) fliP
( YP_005675545.1 )

flagellar biosynthetic protein FliP

NC_017297
(Clostridium botulinum 230613)

3e-21

574) fliP
( YP_001391949.1 )

flagellar biosynthesis protein FliP

NC_009699
(Clostridium botulinum Langeland)

3e-21

575) Fbal_2331
( YP_003913608.1 )

flagellar biosynthetic protein FliP

NC_014541
(Ferrimonas balearica DSM 9799)

2e-21

576) fliP
( YP_003619080.1 )

flagellar biosynthetic protein FliP

NC_014125
(Legionella pneumophila 2300/99 Alcoy)

3e-21

577) lp12_1727
( YP_005186088.1 )

flagellar biosynthetic protein FliP

NC_016811
(Legionella pneumophila ATCC 43290)

3e-21

578) LPE509_01400
( YP_007567943.1 )

Flagellar biosynthesis protein FliP

NC_020521
(Legionella pneumophila Philadelphia 1)

3e-21

579) fliP
( YP_095815.1 )

flagellar biosynthesis protein FliP

NC_002942
(Legionella pneumophila Philadelphia 1)

3e-21

580) fliP
( YP_008063475.1 )

flagellar biosynthetic protein FliP

NC_021350
(Legionella pneumophila Thunder Bay)

3e-21

581) swp_5086
( YP_002314288.1 )

Flagellar transport protein FliP

NC_011566
(Shewanella piezotolerans WP3)

5e-21

582) fliP
( YP_001471824.1 )

flagellar biosynthesis protein FliP

NC_009831
(Shewanella sediminis HAW-EB3)

5e-21

583) fliP
( YP_001167849.1 )

flagellar biosynthesis protein FliP

NC_009428
(Rhodobacter sphaeroides ATCC 17025)

2e-20

584) fliP
( YP_007702200.1 )

flagellar biosynthetic protein

NC_020909
(Octadecabacter arcticus 238)

2e-20

585) fliP
( YP_564662.1 )

flagellar biosynthesis protein FliP

NC_007954
(Shewanella denitrificans OS217)

1e-19

586) fliP
( NP_908191.1 )

flagellar biosynthesis protein FliP

NC_005090
(Wolinella succinogenes DSM 1740)

2e-19

587) fliP
( YP_008589950.1 )

putative flagellar biosynthesis protein FliP

NC_022444
(Desulfovibrio gigas ATCC 19364)

5e-19

588) fliP
( YP_891929.1 )

flagellar biosynthesis protein FliP

NC_008599
(Campylobacter fetus 82-40)

6e-19

589) Q7A_2938
( YP_006297360.1 )

flagellar biosynthesis protein FliP

NC_017857
(Methylophaga sp. JAM1)

1e-18

590) fliP
( YP_001019772.1 )

flagellar biosynthesis protein FliP

NC_008825
(Methylibium petroleiphilum PM1)

2e-14

591) fliP
( YP_461382.1 )

flagellar biosynthesis protein FliP

NC_007759
(Syntrophus aciditrophicus SB)

4e-14

592) fliP
( YP_006509053.1 )

flagellar biosynthesis protein

NC_018140
(Legionella pneumophila HL06041035)

1e-13

593) fliP
( YP_127091.1 )

flagellar biosynthesis protein FliP

NC_006369
(Legionella pneumophila Lens)

1e-13

594) fliP
( YP_006505781.1 )

flagellar biosynthesis protein

NC_018139
(Legionella pneumophila Lorraine)

1e-13

595) MROS_2143
( YP_006528386.1 )

flagellar biosynthetic protein FliP

NC_018178
(Melioribacter roseus P3M-2)

2e-13

596) fliP
( YP_005847500.1 )

flagellar biosynthetic protein FliP

NC_017464
(Ignavibacterium album JCM 16511)

4e-13

597) fliP
( YP_002607556.1 )

flagellar biosynthesis protein FliP

NC_012115
(Nautilia profundicola AmH)

7e-13

598) ECBG_01258
( YP_007751372.1 )

flagellar biosynthetic protein FliP

NC_020995
(Enterococcus casseliflavus EC20)

1e-12

599) Calni_1332
( YP_004051403.1 )

flagellar biosynthetic protein flip

NC_014758
(Calditerrivibrio nitroreducens DSM 19672)

6e-12

600) R2APBS1_2987
( YP_007591297.1 )

flagellar biosynthetic protein FliP

NC_020541
(Rhodanobacter sp. 2APBS1)

4e-09

601) Anae109_0745
( YP_001377942.1 )

type III secretion system protein

NC_009675
(Anaeromyxobacter sp. Fw109-5)

7e-08

• Sequence Alignments

1) ECs4583 in NC_002695


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  267 bits (997),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 176/217 (82%), Positives = 202/217 (94%), Gaps = 0/217 (0%)

Query  1    MSQLMTIGSQpifliivffllsllpifvGIGTSFLKISIVLGILKNALGIQQVPPNMALT  60
            MSQL  IG+QPI+LI++FFLLS+LPIFV IGTSFLKI IVLGILKNALGIQQVPPNMA+T
Sbjct  1    MSQLSVIGGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAIT  60

Query  61   SVSLILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVE  120
            SV+L+LTMFIMSP+IL+INDNI ++PINY+D DF+QKV++ ILSPYR FL KNT   ++ 
Sbjct  61   SVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS  120

Query  121  FFERAAQKKLGNETILKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLA  180
            FFE AA+KKLGN+T+LK DS+FILLPAFT+GQLEAAFK+GFLLYLPFIAIDLIISNILLA
Sbjct  121  FFESAAKKKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLA  180

Query  181  LGMMMVSPVTISIPFKILLFILVGGWQKLFEFLLVVN  217
            LGMMMVSPVTISIPFKILLFILVGGWQK+FE+LLVVN
Sbjct  181  LGMMMVSPVTISIPFKILLFILVGGWQKIFEYLLVVN  217

2) escR in NC_013353


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  266 bits (993),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 177/217 (82%), Positives = 203/217 (94%), Gaps = 0/217 (0%)

Query  1    MSQLMTIGSQpifliivffllsllpifvviGTSFLKISIVLGILKNALGIQQVPPNMALT  60
            MSQL  IG+QPI+LI++FFLLS+LPIFVVIGTSFLKI IVLGILKNALGIQQVPPNMA+T
Sbjct  1    MSQLSVIGGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAIT  60

Query  61   SVSLILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKENVE  120
            SV+L+LTMFIMSP+IL+INDNI ++PINY+D DF+QKV++ ILSPYR FL KNT   ++ 
Sbjct  61   SVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS  120

Query  121  FFERAAQKKLGNETILKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLA  180
            FFE AA+KKLGN+T+LK DS+FILLPAFT+GQLEAAFK+GFLLYLPFIAIDLIISNILLA
Sbjct  121  FFESAAKKKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLA  180

Query  181  LGMMMVSPVTISIPFKILLFILVGGWQKLFEFLLVVN  217
            LGMMMVSPVTISIPFKILLFILVGGWQK+FE+LLVVN
Sbjct  181  LGMMMVSPVTISIPFKILLFILVGGWQKIFEYLLVVN  217

3) escR in NC_013361


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  266 bits (993),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 177/217 (82%), Positives = 203/217 (94%), Gaps = 0/217 (0%)

Query  1    MSQLMTIGSQpifliivffllsllpifvviGTSFLKISIVLGILKNALGIQQVPPNMALT  60
            MSQL  IG+QPI+LI++FFLLS+LPIFVVIGTSFLKI IVLGILKNALGIQQVPPNMA+T
Sbjct  1    MSQLSVIGGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAIT  60

Query  61   SVSLILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKENVE  120
            SV+L+LTMFIMSP+IL+INDNI ++PINY+D DF+QKV++ ILSPYR FL KNT   ++ 
Sbjct  61   SVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS  120

Query  121  FFERAAQKKLGNETILKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLA  180
            FFE AA+KKLGN+T+LK DS+FILLPAFT+GQLEAAFK+GFLLYLPFIAIDLIISNILLA
Sbjct  121  FFESAAKKKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLA  180

Query  181  LGMMMVSPVTISIPFKILLFILVGGWQKLFEFLLVVN  217
            LGMMMVSPVTISIPFKILLFILVGGWQK+FE+LLVVN
Sbjct  181  LGMMMVSPVTISIPFKILLFILVGGWQKIFEYLLVVN  217

4) escR in NC_013364


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  265 bits (992),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 177/217 (82%), Positives = 203/217 (94%), Gaps = 0/217 (0%)

Query  1    MSQLMTIGSQpifliivffllsllpifvviGTSFLKISIVLGILKNALGIQQVPPNMALT  60
            MSQL  IG+QPI+LI++FFLLS+LPIFVVIGTSFLKI IVLGILKNALGIQQVPPNMA+T
Sbjct  1    MSQLSVIGGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAIT  60

Query  61   SVSLILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVE  120
            SV+L+LTMFIMSP+IL+INDNI ++PINY+D DF+QKV++ ILSPYR FL KNT   ++ 
Sbjct  61   SVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS  120

Query  121  FFERAAQKKLGNETILKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLA  180
            FFE AA+KKLGN+T+LK DS+FILLPAFT+GQLEAAFK+GFLLYLPFIAIDLIISNILLA
Sbjct  121  FFESAAKKKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLA  180

Query  181  LGMMMVSPVTISIPFKILLFILVGGWQKLFEFLLVVN  217
            LGMMMVSPVTISIPFKILLFILVGGWQK+FE+LLVVN
Sbjct  181  LGMMMVSPVTISIPFKILLFILVGGWQKIFEYLLVVN  217

5) escR in NC_011601


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  265 bits (992),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 177/217 (82%), Positives = 203/217 (94%), Gaps = 0/217 (0%)

Query  1    MSQLMTIGSQpifliivffllsllpifvviGTSFLKISIVLGILKNALGIQQVPPNMALT  60
            MSQL  IG+QPI+LI++FFLLS+LPIFVVIGTSFLKI IVLGILKNALGIQQVPPNMA+T
Sbjct  1    MSQLSVIGGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAIT  60

Query  61   SVSLILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVE  120
            SV+L+LTMFIMSP+IL+INDNI ++PINY+D DF+QKV++ ILSPYR FL KNT   ++ 
Sbjct  61   SVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS  120

Query  121  FFERAAQKKLGNETILKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLA  180
            FFE AA+KKLGN+T+LK DS+FILLPAFT+GQLEAAFK+GFLLYLPFIAIDLIISNILLA
Sbjct  121  FFESAAKKKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLA  180

Query  181  LGMMMVSPVTISIPFKILLFILVGGWQKLFEFLLVVN  217
            LGMMMVSPVTISIPFKILLFILVGGWQK+FE+LLVVN
Sbjct  181  LGMMMVSPVTISIPFKILLFILVGGWQKIFEYLLVVN  217

6) epaP in NC_011353


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  265 bits (992),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 177/217 (82%), Positives = 203/217 (94%), Gaps = 0/217 (0%)

Query  1    MSQLMTIGSQpifliivffllsllpifvviGTSFLKISIVLGILKNALGIQQVPPNMALT  60
            MSQL  IG+QPI+LI++FFLLS+LPIFVVIGTSFLKI IVLGILKNALGIQQVPPNMA+T
Sbjct  1    MSQLSVIGGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAIT  60

Query  61   SVSLILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVE  120
            SV+L+LTMFIMSP+IL+INDNI ++PINY+D DF+QKV++ ILSPYR FL KNT   ++ 
Sbjct  61   SVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS  120

Query  121  FFERAAQKKLGNETILKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLA  180
            FFE AA+KKLGN+T+LK DS+FILLPAFT+GQLEAAFK+GFLLYLPFIAIDLIISNILLA
Sbjct  121  FFESAAKKKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLA  180

Query  181  LGMMMVSPVTISIPFKILLFILVGGWQKLFEFLLVVN  217
            LGMMMVSPVTISIPFKILLFILVGGWQK+FE+LLVVN
Sbjct  181  LGMMMVSPVTISIPFKILLFILVGGWQKIFEYLLVVN  217

7) escR in NC_002655


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  265 bits (992),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 177/217 (82%), Positives = 203/217 (94%), Gaps = 0/217 (0%)

Query  1    MSQLMTIGSQpifliivffllsllpifvviGTSFLKISIVLGILKNALGIQQVPPNMALT  60
            MSQL  IG+QPI+LI++FFLLS+LPIFVVIGTSFLKI IVLGILKNALGIQQVPPNMA+T
Sbjct  1    MSQLSVIGGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAIT  60

Query  61   SVSLILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVE  120
            SV+L+LTMFIMSP+IL+INDNI ++PINY+D DF+QKV++ ILSPYR FL KNT   ++ 
Sbjct  61   SVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS  120

Query  121  FFERAAQKKLGNETILKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLA  180
            FFE AA+KKLGN+T+LK DS+FILLPAFT+GQLEAAFK+GFLLYLPFIAIDLIISNILLA
Sbjct  121  FFESAAKKKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLA  180

Query  181  LGMMMVSPVTISIPFKILLFILVGGWQKLFEFLLVVN  217
            LGMMMVSPVTISIPFKILLFILVGGWQK+FE+LLVVN
Sbjct  181  LGMMMVSPVTISIPFKILLFILVGGWQKIFEYLLVVN  217

8) escR in NC_013008


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  265 bits (992),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 177/217 (82%), Positives = 203/217 (94%), Gaps = 0/217 (0%)

Query  1    MSQLMTIGSQpifliivffllsllpifvviGTSFLKISIVLGILKNALGIQQVPPNMALT  60
            MSQL  IG+QPI+LI++FFLLS+LPIFVVIGTSFLKI IVLGILKNALGIQQVPPNMA+T
Sbjct  1    MSQLSVIGGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAIT  60

Query  61   SVSLILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVE  120
            SV+L+LTMFIMSP+IL+INDNI ++PINY+D DF+QKV++ ILSPYR FL KNT   ++ 
Sbjct  61   SVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS  120

Query  121  FFERAAQKKLGNETILKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLA  180
            FFE AA+KKLGN+T+LK DS+FILLPAFT+GQLEAAFK+GFLLYLPFIAIDLIISNILLA
Sbjct  121  FFESAAKKKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLA  180

Query  181  LGMMMVSPVTISIPFKILLFILVGGWQKLFEFLLVVN  217
            LGMMMVSPVTISIPFKILLFILVGGWQK+FE+LLVVN
Sbjct  181  LGMMMVSPVTISIPFKILLFILVGGWQKIFEYLLVVN  217

9) escR in NC_013941


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  265 bits (992),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 177/217 (82%), Positives = 203/217 (94%), Gaps = 0/217 (0%)

Query  1    MSQLMTIGSQpifliivffllsllpifvviGTSFLKISIVLGILKNALGIQQVPPNMALT  60
            MSQL  IG+QPI+LI++FFLLS+LPIFVVIGTSFLKI IVLGILKNALGIQQVPPNMA+T
Sbjct  1    MSQLSVIGGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAIT  60

Query  61   SVSLILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVE  120
            SV+L+LTMFIMSP+IL+INDNI ++PINY+D DF+QKV++ ILSPYR FL KNT   ++ 
Sbjct  61   SVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS  120

Query  121  FFERAAQKKLGNETILKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLA  180
            FFE AA+KKLGN+T+LK DS+FILLPAFT+GQLEAAFK+GFLLYLPFIAIDLIISNILLA
Sbjct  121  FFESAAKKKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLA  180

Query  181  LGMMMVSPVTISIPFKILLFILVGGWQKLFEFLLVVN  217
            LGMMMVSPVTISIPFKILLFILVGGWQK+FE+LLVVN
Sbjct  181  LGMMMVSPVTISIPFKILLFILVGGWQKIFEYLLVVN  217

10) ECO55CA74_21290 in NC_017656


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  265 bits (992),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 177/217 (82%), Positives = 203/217 (94%), Gaps = 0/217 (0%)

Query  1    MSQLMTIGSQpifliivffllsllpifvviGTSFLKISIVLGILKNALGIQQVPPNMALT  60
            MSQL  IG+QPI+LI++FFLLS+LPIFVVIGTSFLKI IVLGILKNALGIQQVPPNMA+T
Sbjct  1    MSQLSVIGGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAIT  60

Query  61   SVSLILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVE  120
            SV+L+LTMFIMSP+IL+INDNI ++PINY+D DF+QKV++ ILSPYR FL KNT   ++ 
Sbjct  61   SVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS  120

Query  121  FFERAAQKKLGNETILKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLA  180
            FFE AA+KKLGN+T+LK DS+FILLPAFT+GQLEAAFK+GFLLYLPFIAIDLIISNILLA
Sbjct  121  FFESAAKKKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLA  180

Query  181  LGMMMVSPVTISIPFKILLFILVGGWQKLFEFLLVVN  217
            LGMMMVSPVTISIPFKILLFILVGGWQK+FE+LLVVN
Sbjct  181  LGMMMVSPVTISIPFKILLFILVGGWQKIFEYLLVVN  217

11) CDCO157_4318 in NC_017906


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  265 bits (992),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 177/217 (82%), Positives = 203/217 (94%), Gaps = 0/217 (0%)

Query  1    MSQLMTIGSQpifliivffllsllpifvviGTSFLKISIVLGILKNALGIQQVPPNMALT  60
            MSQL  IG+QPI+LI++FFLLS+LPIFVVIGTSFLKI IVLGILKNALGIQQVPPNMA+T
Sbjct  1    MSQLSVIGGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAIT  60

Query  61   SVSLILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVE  120
            SV+L+LTMFIMSP+IL+INDNI ++PINY+D DF+QKV++ ILSPYR FL KNT   ++ 
Sbjct  61   SVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS  120

Query  121  FFERAAQKKLGNETILKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLA  180
            FFE AA+KKLGN+T+LK DS+FILLPAFT+GQLEAAFK+GFLLYLPFIAIDLIISNILLA
Sbjct  121  FFESAAKKKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLA  180

Query  181  LGMMMVSPVTISIPFKILLFILVGGWQKLFEFLLVVN  217
            LGMMMVSPVTISIPFKILLFILVGGWQK+FE+LLVVN
Sbjct  181  LGMMMVSPVTISIPFKILLFILVGGWQKIFEYLLVVN  217

12) escR in NC_013716


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  262 bits (981),  Expect = 7e-72, Method: Compositional matrix adjust.
 Identities = 173/217 (80%), Positives = 202/217 (94%), Gaps = 0/217 (0%)

Query  1    MTQLMTIGSQpiflivvffffsllpifvviGTSFLKISIVLGILKNALGIQQVPPNMALT  60
            M+QL  IG+QPI+LIV+FF++S+LPIFVVIGTSFLKI IVLGILKNALGIQQVPPNMA+T
Sbjct  1    MSQLSVIGGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAIT  60

Query  61   SVSLILTIFIMSPIILQINDNISQEPINYTDSDFYQKVDGKIISPYRIFLENNTNKENID  120
            SV+L+LT+FIMSP+IL+INDNI ++PINY+D DFYQKV+  I+SPYR+FL +NT   +I 
Sbjct  61   SVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS  120

Query  121  FFENVAKKKLGNETSLKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLA  180
            FFE+ AKKKLGN+T LK DS+FILLPAFT+GQLEAAFK+GFLLYLPFIAIDLIISNILLA
Sbjct  121  FFESAAKKKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLA  180

Query  181  LGMMMVSPVTISIPFKILLFILIGGWQKLFEFLLVVN  217
            LGMMMVSPVTISIPFKILLFIL+GGWQK+FE+LLVVN
Sbjct  181  LGMMMVSPVTISIPFKILLFILVGGWQKIFEYLLVVN  217

13) Sbal175_2391 in NC_017571


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  202 bits (749),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 109/209 (53%), Positives = 170/209 (82%), Gaps = 2/209 (0%)

Query  5    DHPVQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTL  64
            ++P+ LI+++F LS+LP+F V+GTSFLK+ IV+++L+NALGIQQ+PPNMAI ++AL+LT+
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  65   FTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLDKNTSNTQIEFFANIGHK  124
            F M+PV + INDN+   PI +   + +++++   ++PYR FL KNT + +I FF + + K
Sbjct  69   FIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKK  128

Query  125  VWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMV  184
               +  + VL  DS+++++PAFT++QL  AFK+G+L+YLPF+AIDLI+SNILLA+GMMMV
Sbjct  129  KLGN--DTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMV  186

Query  185  SPMTIALPFKLLIFILMGGWEKLISQLMM  213
            SP+TI++PFK+L+FIL+GGW+K++  L++
Sbjct  187  SPVTISIPFKILLFILVGGWQKIFEYLLV  215

14) Sbal117_2090 in NC_017579


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  202 bits (749),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 109/209 (53%), Positives = 170/209 (82%), Gaps = 2/209 (0%)

Query  5    DHPVQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTL  64
            ++P+ LI+++F LS+LP+F V+GTSFLK+ IV+++L+NALGIQQ+PPNMAI ++AL+LT+
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  65   FTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLDKNTSNTQIEFFANIGHK  124
            F M+PV + INDN+   PI +   + +++++   ++PYR FL KNT + +I FF + + K
Sbjct  69   FIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKK  128

Query  125  VWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMV  184
               +  + VL  DS+++++PAFT++QL  AFK+G+L+YLPF+AIDLI+SNILLA+GMMMV
Sbjct  129  KLGN--DTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMV  186

Query  185  SPMTIALPFKLLIFILMGGWEKLISQLMM  213
            SP+TI++PFK+L+FIL+GGW+K++  L++
Sbjct  187  SPVTISIPFKILLFILVGGWQKIFEYLLV  215

15) Sbal_1974 in NC_009052


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  202 bits (749),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 109/209 (53%), Positives = 170/209 (82%), Gaps = 2/209 (0%)

Query  5    DHPVQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTL  64
            ++P+ LI+++F LS+LP+F V+GTSFLK+ IV+++L+NALGIQQ+PPNMAI ++AL+LT+
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  65   FTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLDKNTSNTQIEFFANIGHK  124
            F M+PV + INDN+   PI +   + +++++   ++PYR FL KNT + +I FF + + K
Sbjct  69   FIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKK  128

Query  125  VWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMV  184
               +  + VL  DS+++++PAFT++QL  AFK+G+L+YLPF+AIDLI+SNILLA+GMMMV
Sbjct  129  KLGN--DTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMV  186

Query  185  SPMTIALPFKLLIFILMGGWEKLISQLMM  213
            SP+TI++PFK+L+FIL+GGW+K++  L++
Sbjct  187  SPVTISIPFKILLFILVGGWQKIFEYLLV  215

16) Sbal195_2278 in NC_009997


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  202 bits (750),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 110/209 (53%), Positives = 170/209 (82%), Gaps = 2/209 (0%)

Query  5    DHPIQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTL  64
            ++PI LI+++F LS+LP+F V+GTSFLK+ IV+++L+NALGIQQ+PPNMAI ++AL+LT+
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  65   FTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLEKNTSNTQIEFFANIGHK  124
            F M+PV + INDN+   PI +   + +++++   ++PYR FL KNT + +I FF + + K
Sbjct  69   FIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKK  128

Query  125  VWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMV  184
               +  + VL  DS+++++PAFT++QL  AFK+G+L+YLPF+AIDLI+SNILLA+GMMMV
Sbjct  129  KLGN--DTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMV  186

Query  185  SPMTIALPFKLLIFILMGGWEKLISQLMM  213
            SP+TI++PFK+L+FIL+GGW+K++  L++
Sbjct  187  SPVTISIPFKILLFILVGGWQKIFEYLLV  215

17) Sbal678_2288 in NC_016901


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  202 bits (750),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 110/209 (53%), Positives = 170/209 (82%), Gaps = 2/209 (0%)

Query  5    DHPIQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTL  64
            ++PI LI+++F LS+LP+F V+GTSFLK+ IV+++L+NALGIQQ+PPNMAI ++AL+LT+
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  65   FTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLEKNTSNTQIEFFANIGHK  124
            F M+PV + INDN+   PI +   + +++++   ++PYR FL KNT + +I FF + + K
Sbjct  69   FIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKK  128

Query  125  VWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMV  184
               +  + VL  DS+++++PAFT++QL  AFK+G+L+YLPF+AIDLI+SNILLA+GMMMV
Sbjct  129  KLGN--DTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMV  186

Query  185  SPMTIALPFKLLIFILMGGWEKLISQLMM  213
            SP+TI++PFK+L+FIL+GGW+K++  L++
Sbjct  187  SPVTISIPFKILLFILVGGWQKIFEYLLV  215

18) SVI_2230 in NC_014012


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  201 bits (748),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 113/209 (55%), Positives = 169/209 (81%), Gaps = 2/209 (0%)

Query  5    DNPVQLIILLFCLSILPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLSLILTL  64
            ++P+ LI+++F LS+LP+F V+GTSFLK+ IVL++L+NALGIQQ+PPNMAI +++L+LT+
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  65   FIMAPIGMEINDNLKVHPIVFDSANIIEQVNTLAIIPYRDFLEKNTSKTQLDFFANIGHK  124
            FIM+P+ + INDN+  +PI +   ++ ++V+   + PYR FL KNT   ++ FF + + K
Sbjct  69   FIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKK  128

Query  125  TWPDKYQDVLSKDSLFVMLPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMV  184
               +  + VL  DS+F++LPAFT++QL  AFK+G+L+YLPF+AIDLI+SNILLA+GMMMV
Sbjct  129  KLGN--DTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMV  186

Query  185  SPMTISLPFKLLIFILMGGWEKLVSQLMV  213
            SP+TIS+PFK+L+FIL+GGW+K+   L+V
Sbjct  187  SPVTISIPFKILLFILVGGWQKIFEYLLV  215

19) epaP in NC_021173


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  197 bits (730),  Expect = 4e-52, Method: Compositional matrix adjust.
 Identities = 103/205 (51%), Positives = 168/205 (82%), Gaps = 2/205 (0%)

Query  5    DQPVQLIVVLFALSILPLLMVLGSSFLKLAVVFALLRNALGTQQIPPNIALYGLALVLTL  64
            +QP+ LIV++F LS+LP+++V+G+SFLK+ +V+++L+NALG QQ+PPN+A+ ++ALVLT+
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  65   FIMAPVGLAIQDNLAEHPVQLDDKQFTQQVETTILAPYRDFLARNTARAQVRFFADIGHR  124
            FIM+PV L I+DN+  +P++  D++F Q+VE  IL+PYR FL +NT   ++ FF   + +
Sbjct  69   FIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKK  128

Query  125  TWPEPYRNRIPDDSLIVLIPAFAISQLIEAFKIGLLLFLPFVAIDLIVSNVLLAMGMMMV  184
               +     + +DS+++L+PAF+++QL  AFK+G+LL+LPF+AIDLI+SN+LLA+GMMMV
Sbjct  129  KLGN--DTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMV  186

Query  185  SPMTIALPLKLLVFVLINGWEKLLG  209
            SP+TI++P+K+L+F+L+ GW+K++ 
Sbjct  187  SPVTISIPFKILLFILVGGWQKIFE  211

20) escR in NC_005085


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  186 bits (691),  Expect = 5e-49, Method: Compositional matrix adjust.
 Identities = 99/195 (51%), Positives = 160/195 (83%), Gaps = 2/195 (1%)

Query  15   FALSILPLLVVLGTSFLKLAVVFALLRNALGIQQIPPNIALYGLALILTLFIMAPIGLEI  74
            F LS+LP++VV+GTSFLK+ +V+++L+NALGIQQ+PPN+A+ ++AL+LT+FIM+P+ L I
Sbjct  19   FLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKI  78

Query  75   QDNLIAHPIKIESPAFIQQVESGVFTPYRVFLERNTAPEQVHFFADIGHQIWPEKYQQRI  134
            +DN+  +PI+     F Q+VE G+++PYRVFL +NT   ++ FF   + +   +  +  +
Sbjct  79   NDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGN--DTVL  136

Query  135  PDNSLLVLMPAFTVSQLIEAFKIGLLLFLPFVAIDLVVSNVLLAMGMMMVSPMTISMPLK  194
             ++S+++L+PAFT++QL  AFK+G+LL+LPF+AIDL++SN+LLA+GMMMVSP+TIS+P+K
Sbjct  137  KEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFK  196

Query  195  LLVFVLMNGWEKLLG  209
            +L+F+L+ GW+K++ 
Sbjct  197  ILLFILVGGWQKIFE  211

21) Y11_35451 in NC_017564


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  172 bits (638),  Expect = 8e-45, Method: Compositional matrix adjust.
 Identities = 99/182 (55%), Positives = 144/182 (80%), Gaps = 4/182 (2%)

Query  24   MVMGTSFLKLSIVLSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL  83
            +V+GTSFLK+ IVL++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++ +P+
Sbjct  28   VVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPI  87

Query  84   PNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTI-KPNSLLIL  142
                  +   +++  L PYR FL++NT   ++ FF+   + K      DT+ K +S++IL
Sbjct  88   NYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLG---NDTVLKEDSIFIL  144

Query  143  MPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILID  202
            +PAFTL+QL  AFK+G+LLYLPF+AIDLI+SNILLA+GMMMVSP+TIS+PFK+L+FIL++
Sbjct  145  LPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVG  204

Query  203  GW  204
            GW
Sbjct  205  GW  206

22) A1122_03785 in NC_017168


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (632),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  46   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  105
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  106  DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  224
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

23) epaP in NC_010159


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (633),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

24) YPA_4012 in NC_008150


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (632),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  46   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  105
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  106  DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  224
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

25) fliP1 in NC_005810


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (632),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  46   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  105
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  106  DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  224
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

26) YPO0270 in NC_003143


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (633),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

27) YPD4_0235 in NC_017154


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (633),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

28) YPD8_0240 in NC_017160


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (633),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

29) y0530 in NC_004088


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (632),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  46   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  105
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  106  DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  224
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

30) YPN_3397 in NC_008149


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (632),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  46   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  105
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  106  DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  224
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

31) YPDSF_3700 in NC_009381


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (632),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  46   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  105
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  106  DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  224
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

32) YPZ3_0233 in NC_014029


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (633),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

33) epaP in NC_009708


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (633),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  26   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  85
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  86   DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  145
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  146  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  204
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

34) YPTB0327 in NC_006155


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (632),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  46   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  105
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  106  DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  224
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

35) YPTS_0351 in NC_010634


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (632),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  46   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  105
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  106  DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  224
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

36) YPK_3902 in NC_010465


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (632),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 92/179 (52%), Positives = 147/179 (83%), Gaps = 2/179 (1%)

Query  46   MGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSN  105
            +GT+FLK+ +V+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  106  DIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPA  165
                + ++++Q  L PYR FL++NT   +++FF+   ++K  +     +K DS++IL+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  166  FTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGW  224
            FTL+QL+ AFK+G+LL+LPF+AIDLI+SNILLA+GMMMVSP+T+S+PFK+L+F+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

37) ETAC_04225 in NC_020796


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (632),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 93/190 (49%), Positives = 147/190 (78%), Gaps = 3/190 (1%)

Query  24   IVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLALILTLFIMTPVGTAVQARLADAPA  83
            +V+GTSFLK+ +V+++L+NALGIQQ+PPN+A+ ++AL+LT+FIM+PV   ++  +   P 
Sbjct  28   VVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPI  87

Query  84   E-AQTTLLARLSDNTLDPYRQFLRQHTSATQLHFFRQVATKSWPASVREQISDDSLLLLM  142
            + ++  +  ++ +  L PYR FL+++T   ++ FF   A K         + +DS+++L+
Sbjct  88   NYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGG  202
            PAF+++QL  AF++G+LL+LPFIAIDLI+SNILLA+GMMMVSP+TIS+PFK+L+FILVGG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WDKLLGQLLL  212
            W+K++  LL+
Sbjct  206  WQKIFEYLLV  215

38) esaR in NC_013508


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (632),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 93/190 (49%), Positives = 147/190 (78%), Gaps = 3/190 (1%)

Query  24   IVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLALILTLFIMTPVGTAVQARLADAPA  83
            +V+GTSFLK+ +V+++L+NALGIQQ+PPN+A+ ++AL+LT+FIM+PV   ++  +   P 
Sbjct  28   VVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPI  87

Query  84   E-AQTTLLARLSDNTLDPYRQFLRQHTSATQLHFFRQVATKSWPASVREQISDDSLLLLM  142
            + ++  +  ++ +  L PYR FL+++T   ++ FF   A K         + +DS+++L+
Sbjct  88   NYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGG  202
            PAF+++QL  AF++G+LL+LPFIAIDLI+SNILLA+GMMMVSP+TIS+PFK+L+FILVGG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WDKLLGQLLL  212
            W+K++  LL+
Sbjct  206  WQKIFEYLLV  215

39) esaR in NC_017309


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  171 bits (632),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 93/190 (49%), Positives = 147/190 (78%), Gaps = 3/190 (1%)

Query  24   IVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLALILTLFIMTPVGTAVQARLADAPA  83
            +V+GTSFLK+ +V+++L+NALGIQQ+PPN+A+ ++AL+LT+FIM+PV   ++  +   P 
Sbjct  28   VVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPI  87

Query  84   E-AQTTLLARLSDNTLDPYRQFLRQHTSATQLHFFRQVATKSWPASVREQISDDSLLLLM  142
            + ++  +  ++ +  L PYR FL+++T   ++ FF   A K         + +DS+++L+
Sbjct  88   NYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGG  202
            PAF+++QL  AF++G+LL+LPFIAIDLI+SNILLA+GMMMVSP+TIS+PFK+L+FILVGG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WDKLLGQLLL  212
            W+K++  LL+
Sbjct  206  WQKIFEYLLV  215

40) YE105_C0338 in NC_015224


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  170 bits (630),  Expect = 4e-44, Method: Compositional matrix adjust.
 Identities = 98/182 (54%), Positives = 144/182 (80%), Gaps = 4/182 (2%)

Query  24   MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL  83
            +V+GTSFLK+ IV+++L+NALG+QQVPPN+AI ++ALVLT+FIM+PV L ++  ++ +P+
Sbjct  28   VVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPI  87

Query  84   PNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTI-KPNSLLIL  142
                  +   +++  L PYR FL++NT   ++ FF+   + K      DT+ K +S++IL
Sbjct  88   NYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLG---NDTVLKEDSIFIL  144

Query  143  MPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILID  202
            +PAFTL+QL  AFK+G+LLYLPF+AIDLI+SNILLA+GMMMVSP+TIS+PFK+L+FIL++
Sbjct  145  LPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVG  204

Query  203  GW  204
            GW
Sbjct  205  GW  206

41) SARI_01563 in NC_010067


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  169 bits (626),  Expect = 7e-44, Method: Compositional matrix adjust.
 Identities = 97/182 (54%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VADAPFWMSEWDSKALAPYRQFLQKNSEEKEASYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             +D  F     +   L+PYR FL+KN+ EK+ S+F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

42) HCH_03263 in NC_007645


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  169 bits (626),  Expect = 7e-44, Method: Compositional matrix adjust.
 Identities = 92/191 (49%), Positives = 149/191 (79%), Gaps = 2/191 (1%)

Query  16   IALIPFFAVMATSFVKIAVVLGLLRNALGIQQIPPNMALYGLAIILTAYIMAPVGISAYN  75
            ++++P+F V++TSF+KI +VLG+L+NALGIQQ+PPNMA+ ++A++LT +IM+PV +   +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  76   ELSTKPISLENTQELKALMDTASQPYKEFLQRHGSEDEQTFFHETAAEIWPEDVAKGLEK  135
            ++  +PI+  + +  + + +    PY+ FL+++  E + +FF+ +A     +D    L  
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKE  138

Query  136  DSFFVLIPAFTASELTSAFEIGFLIYLPFLAIDLIISNILLAMGMMMVSPMTISLPFKLL  195
            DS+F+L+PAFT ++L +AF +GFL+YLPF+AIDLIISNILLA+GMMMVSP+TIS+PFK+L
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  196  LFVLMDGWTRL  206
            LF+L++GW ++
Sbjct  199  LFILVGGWQKI  209

43) ssaR in NC_021820


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

44) ssaR in NC_021844


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (623),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 96/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F S  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

45) SBOV14161 in NC_022241


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (623),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 96/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F S  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

46) ssaR in NC_006905


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

47) ssaR in NC_021818


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

48) epaP in NC_011205


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

49) ssaR in NC_011294


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (623),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 96/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F S  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

50) ssaR in NC_011274


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (623),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 96/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F S  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

51) ssaR in NC_022221


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (623),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 96/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F S  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

52) ssaR in NC_016831


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (623),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 96/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F S  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

53) SEEH1578_16330 in NC_021810


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

54) SU5_02035 in NC_017623


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

55) ssaR in NC_021812


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

56) epaP in NC_011083


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

57) CFSAN001992_04495 in NC_020307


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

58) epaP in NC_011080


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (623),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 96/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F S  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

59) SN31241_24890 in NC_021902


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (623),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 96/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F S  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

60) SSPA1332 in NC_011147


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

61) yscR in NC_006511


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

62) SPAB_01906 in NC_010102


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

63) yscR in NC_012125


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

64) ssaR in NC_021984


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (623),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 96/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F S  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

65) epaP in NC_011094


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

66) ssaR in NC_016856


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

67) yscR in NC_017046


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

68) STMMW_14241 in NC_016854


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

69) ssaR in NC_003197


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

70) yscR in NC_016810


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

71) ssaR in NC_016857


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

72) STMDT12_C14350 in NC_016860


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

73) STU288_03415 in NC_021151


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

74) ssaR in NC_016863


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

75) ssaR in NC_021814


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (622),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

76) epaP in NC_011149


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  168 bits (621),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 146/182 (81%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ ++ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

77) SG1305 in NC_007712


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  167 bits (619),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 92/181 (51%), Positives = 142/181 (79%), Gaps = 5/181 (2%)

Query  26   MGTSFLKLAVVLSILRNALGIQQVPPNMALYGLALILSLFIMAPTALAVKA--QWHPVAA  83
            +GTSFLK+ +VL+IL+NALGIQQVPPNMA+ ++AL+L++FIM+P  L ++   + +P+  
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  84   PGDTPWASGWDGKALMPYRQFLRRNADEKEIRYFHQLVTKTWPEEARRRVRPDSLLILLP  143
            ++        +G  L PYR FL++N+ EK+I +F+    K   +++   ++ DS++ILLP
Sbjct  90   SDRDFYQKVEQG-ILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIFILLP  146

Query  144  AFTVSQLSQAFRIGLLIYLPFLAIDLLVSNVLLAMGMMMVSPMTISLPFKLLIFMLAGGW  203
            AFT++QL  AF++G+L+YLPF+AIDL++SN+LLA+GMMMVSP+TIS+PFK+L+F+L GGW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  204  D  204
            +
Sbjct  207  Q  207

78) yscR in NC_003198


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  167 bits (616),  Expect = 5e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 145/182 (80%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ + ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

79) STBHUCCB_13770 in NC_016832


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  167 bits (616),  Expect = 5e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 145/182 (80%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ + ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

80) TY21A_06540 in NC_021176


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  167 bits (616),  Expect = 5e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 145/182 (80%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ + ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

81) yscR in NC_004631


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  167 bits (616),  Expect = 5e-43, Method: Compositional matrix adjust.
 Identities = 95/182 (53%), Positives = 145/182 (80%), Gaps = 5/182 (2%)

Query  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQ  82
            V+GTSFLK+ +V++IL+NALGIQQVPPN+A+ + ALVL++FIM+P +L +++    +P++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  83   VAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142
             ++  F     +   L+PYR FL+KN+ EK+ ++F +  K+   +D    +K DS++IL+
Sbjct  89   YSDRDFYQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202
            PAFT++QL  AF++G+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WD  204
            W+
Sbjct  206  WQ  207

82) NT01EI_0960 in NC_012779


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  162 bits (597),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 148/190 (78%), Gaps = 3/190 (1%)

Query  24   IVMGTSFLKLSVVFALLRNALGIQQIPPNlalyglaliltlFIMTPVGTAVQARLADAPA  83
            +V+GTSFLK+ +V+++L+NALGIQQ+PPN+A+ ++AL+LT+FIM+PV   ++  +   P 
Sbjct  28   VVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPI  87

Query  84   Q-AQTTLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQVATKSWPASVREKISDNSLLLLM  142
            + ++  +  ++ +  L PYR FL+++T  K++ FF   A K        K  ++S+++L+
Sbjct  88   NYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLK--EDSIFILL  145

Query  143  PAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGG  202
            PAF+++QL  AF++G+LL+LPFIAIDLI+SNILLA+GMMMVSP+TIS+PFK+L+FILVGG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  203  WDKILGQLLL  212
            W+KI+  LL+
Sbjct  206  WQKIFEYLLV  215

83) yscR in NC_015717


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  161 bits (594),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 83/189 (44%), Positives = 143/189 (76%), Gaps = 2/189 (1%)

Query  27   PFIAIMATTYVKLVVVLGLVRNALGVQNVPPNMALNGIAIILTVYIMAPVAIASYQAVRD  86
            P++ +++T+++K+V+VLG+++NALG+Q+VPPNMA+ ++A++LT++IM+PV +   + +  
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  87   RPVDTRNMESLADIARDGAKPFLHFLERNTTPADRAFFVDTTHRLWPKDQADSVTDHDIL  146
             P++  + +    + ++   P+  FL +NT   D +FF  ++ +   +D    + ++ I+
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIF  142

Query  147  VLVPAFTTAELTKAFKAGFLLFLPFIVIDLIVSNILLAMGMMMVSPMTISLPFKLFLFVI  206
            +L+PAFT ++L  AFK GFLL+LPFI IDLI+SNILLA+GMMMVSP+TIS+PFK++LF++
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  207  VNGWQKLIQ  215
            V GWQK+++
Sbjct  203  VGGWQKIFE  211

84) H045_00190 in NC_020209


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  160 bits (592),  Expect = 4e-41, Method: Compositional matrix adjust.
 Identities = 91/209 (44%), Positives = 155/209 (75%), Gaps = 4/209 (1%)

Query  5    GVDPVVLALFFGAMSLLPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALAAT  64
            G +P++L ++F  +S+LP+++V+ T+FLKIVIVL I +NA+G+QQVPP+MAI ++AL  T
Sbjct  8    GGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLT  67

Query  65   LFVMAPVGYQIAENLKTSPLDMSNVQTLQATGLVAIQPLRTFMTRNTDPDVLTHLQENSA  124
            +F+M+PV  +I +N+  +P++ S+ +  Q      + P R F+ +NT    ++ ++  + 
Sbjct  68   MFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK  127

Query  125  RMWPPEMAQSTQREDWV-LLIPAFVVSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQ  183
            +    +   +  +ED + +L+PAF ++QL+A+F +GFL+Y+PFI IDLI+SN+LLALGM 
Sbjct  128  KKLGND---TVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMM  184

Query  184  MVSPMTISLPLKLLLFVMVSGWSRLLDSL  212
            MVSP+TIS+P+K+LLF++V+GW ++++ L
Sbjct  185  MVSPVTISIPFKILLFILVGGWQKIFEYL  213

85) NH44784_014541 in NC_021285


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  153 bits (566),  Expect = 4e-39, Method: Compositional matrix adjust.
 Identities = 90/192 (47%), Positives = 144/192 (75%), Gaps = 11/192 (5%)

Query  25   MTTSFLKIAVVLTLVRNALGVQQVPPNMALYGLALILSAYVMGPVVMQIGDELRAPPAVA  84
            + TSFLKI +VL +++NALG+QQVPPNMA+ ++AL+L+ ++M+PV+++I D++   P   
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNP---  86

Query  85   APGTPEPDRLEGILEAVARGA-EPMRAFMLKNSRAEQRDFFLRTARGLWGEQQARNLKED  143
                  +DR  ++ + V +G   P R F+ KN+   +  FF  +A+   G++    LKED
Sbjct  87   ---INYSDR--DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKED  139

Query  144  DLLVLIPSFLLSELTAAFQIGFLLYLPFVIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  203
             +++L+P+F L++L AAF++GFLLYLPF+ IDLI+SNILLA+GMMMVSPVTIS+P+K++L
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  204  FVMVDGWTRLIQ  215
            F++V+GW ++++
Sbjct  200  FILVGGWQKIFE  211

86) spaP in NC_017731


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  153 bits (565),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 142/189 (76%), Gaps = 2/189 (1%)

Query  7    LATLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIAMLLSLFVMMPVVQDIS  66
            L ++LP+++  GT +LKI IVL +++NA+G+QQVP+ MA+ ++A++L++F+M PV+  I+
Sbjct  20   LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIN  79

Query  67   HYMREEKVDFGNVESVDNFVDGGLGRYKAYLQKYSDPELVQFFESVQQQRNEEPMDAEAH  126
            + +  + +++++ +  ++  +G L+ Y+ +L+K +    + FFES  +++  +  D+   
Sbjct  80   DNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGN--DTVLK  137

Query  127  SATLFSLLPAYALSEVKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMSPVTISVPVKL  186
              ++F LLPA++L+++ +AF +GF +YLPF+ IDL+IS+ILLALGMMM+SPVTIS+P K+
Sbjct  138  EDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  187  ILFVAIDGW  195
            +LF+ ++GW
Sbjct  198  LLFILVGGW  206

87) Dvul_2984 in NC_008741


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  153 bits (564),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 157/200 (79%), Gaps = 7/200 (3%)

Query  15   LLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASGTL  74
            LL++ P+F+++ TS++KIV+V ++++NALG+QQVPP M + ++A++L++FIM+PV    L
Sbjct  20   LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPV---IL  76

Query  75   DLMQNMKIGP-DPAPREIIALLDKAS-PPLRGFLERNADDKVVTVFMSTAKRIWPADQHA  132
             + +N+   P + + R++   ++++  +P R FL +N+ +K ++ F S+AK+    ++++
Sbjct  77   KINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKK--KLGNDT  134

Query  133  SISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVSPMTISLP  192
             +  D+++IL+P+FT+++L  AF++GFLLYLPF+AIDL+ISNILLA+GMMMVSP+TIS+P
Sbjct  135  VLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIP  194

Query  193  FKLLLFVTLDGWLKVSQGLL  212
            FK+LLF+ ++GW K+ + LL
Sbjct  195  FKILLFILVGGWQKIFEYLL  214

88) DVUA0122 in NC_005863


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  153 bits (564),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 157/200 (79%), Gaps = 7/200 (3%)

Query  15   LLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASGTL  74
            LL++ P+F+++ TS++KIV+V ++++NALG+QQVPP M + ++A++L++FIM+PV    L
Sbjct  20   LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPV---IL  76

Query  75   DLMQNMKIGP-DPAPREIIALLDKAS-PPLRGFLERNADDKVVTVFMSTAKRIWPADQHA  132
             + +N+   P + + R++   ++++  +P R FL +N+ +K ++ F S+AK+    ++++
Sbjct  77   KINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKK--KLGNDT  134

Query  133  SISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVSPMTISLP  192
             +  D+++IL+P+FT+++L  AF++GFLLYLPF+AIDL+ISNILLA+GMMMVSP+TIS+P
Sbjct  135  VLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIP  194

Query  193  FKLLLFVTLDGWLKVSQGLL  212
            FK+LLF+ ++GW K+ + LL
Sbjct  195  FKILLFILVGGWQKIFEYLL  214

89) Deval_3224 in NC_017311


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  153 bits (564),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 157/200 (79%), Gaps = 7/200 (3%)

Query  15   LLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASGTL  74
            LL++ P+F+++ TS++KIV+V ++++NALG+QQVPP M + ++A++L++FIM+PV    L
Sbjct  20   LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPV---IL  76

Query  75   DLMQNMKIGP-DPAPREIIALLDKAS-PPLRGFLERNADDKVVTVFMSTAKRIWPADQHA  132
             + +N+   P + + R++   ++++  +P R FL +N+ +K ++ F S+AK+    ++++
Sbjct  77   KINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKK--KLGNDT  134

Query  133  SISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVSPMTISLP  192
             +  D+++IL+P+FT+++L  AF++GFLLYLPF+AIDL+ISNILLA+GMMMVSP+TIS+P
Sbjct  135  VLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIP  194

Query  193  FKLLLFVTLDGWLKVSQGLL  212
            FK+LLF+ ++GW K+ + LL
Sbjct  195  FKILLFILVGGWQKIFEYLL  214

90) hrcR in NC_017575


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  151 bits (556),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 149/200 (75%), Gaps = 10/200 (5%)

Query  9    LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAP  68
            LIV+   +++LP+  ++ TS+ KIV+VLG+L+NALG+QQVPPNM + ++A++++ FIM+P
Sbjct  14   LIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSP  73

Query  69   VGM---EAMQRAHVQLNAQGGANITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQ  125
            V +   + +++  ++ + ++  +  +     ++   P+R FL+K+T  ++ +FF  +A++
Sbjct  74   VILKINDNIEKNPINYSDRDFYQKVE-----QGILSPYRVFLKKNTLEKDISFFESAAKK  128

Query  126  LWPPAKAALLKEDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQV  185
                ++ ++LKED +++L PAFTL +L +AF++GFLLYL+FI IDL+I+N+L+ALG+  V
Sbjct  129  --KLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMV  186

Query  186  TPSNVAIPFKLLLFVVMDGW  205
            +P  ++IPFK+LLF++++GW
Sbjct  187  SPVTISIPFKILLFILVGGW  206

91) DvMF_2439 in NC_011769


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  151 bits (556),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 89/199 (45%), Positives = 153/199 (77%), Gaps = 5/199 (2%)

Query  15   LLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILSIFIMAPMVESTL  74
            LL++ P+F+++ TS++KIV+V ++++NALG+QQVPP M + ++A++L++FIM+P++    
Sbjct  20   LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIN  79

Query  75   DILKTVRVSEQPEPREVVELLDRAS-PPLRDFLSRNADDKVITAFMGTAKRIWPKERHDT  133
            D +    ++     R+  + ++++  +P R FL +N+ +K I+ F ++AK+   ++    
Sbjct  80   DNIEKNPINY--SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TV  135

Query  134  IRRENLLILVPAFTISELTKAFQIGFLLYLPFVAIDLIISNILLAMGMMMVSPMTISLPF  193
            ++ ++++IL+PAFT+++L  AF++GFLLYLPF+AIDLIISNILLA+GMMMVSP+TIS+PF
Sbjct  136  LKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  194  KLLLFVTLDGWLKISQGLL  212
            K+LLF+ ++GW KI + LL
Sbjct  196  KILLFILVGGWQKIFEYLL  214

92) PSEBR_a5382 in NC_015379


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  150 bits (553),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 153/208 (74%), Gaps = 2/208 (0%)

Query  5    GVDPFLLALFIGGISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAAT  64
            G +P+LL +++  +S++P++++I ++FLKI IVL I +NA+G+QQVPPNMA+ ++AL  T
Sbjct  8    GGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLT  67

Query  65   LFIMAPVGHNIAEQVKERPLDFSNTEALQGSALNAIKPLQAFMSRNTNPDILAHLLENTQ  124
            +FIM+PV  +I +++   P+++S+ +  Q      + P + F+ +NT    ++ +   ++
Sbjct  68   MFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK  127

Query  125  RMWPKERAEQASRDDLMLLIPAFMLSELEAGFQMGFLIYIPFIVIDLIVSNLLLALGMQM  184
            +   ++   +   D + +L+PAF L++LEA+F++GFL+Y+PFI IDLI+SN+LLALGM M
Sbjct  128  KKLGNDTVLKE--DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMM  185

Query  185  VAPMTISLPLKLLIFVLVQGWTQLLDSL  212
            V+P+TIS+P+K+L+F+LV GW ++++ L
Sbjct  186  VSPVTISIPFKILLFILVGGWQKIFEYL  213

93) bscR in NC_019382


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  150 bits (552),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 86/193 (45%), Positives = 144/193 (75%), Gaps = 12/193 (6%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + TSFLKI +VL++++NALG+QQVPPNMA+ ++AL+L+ ++M+PV+ +I  +++    + 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  85   GESGTAAPMALDAVLGVVERGV-APLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSE  143
            ++ +             VE+G+ +P R F+ +N+   +  FF  +A+   G+++   L E
Sbjct  90   SDRDFYQK---------VEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKE  138

Query  144  DNLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLF  203
            D++++L PAF +++L AAF++GFLLYLPFI IDLI+SNILLA+GMMMVSPVTIS+P+K++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  204  LFVMVDGWTRLIQ  216
            LF++V+GW ++++
Sbjct  199  LFILVGGWQKIFE  211

94) bscR in NC_002927


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  150 bits (552),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 86/193 (45%), Positives = 144/193 (75%), Gaps = 12/193 (6%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + TSFLKI +VL++++NALG+QQVPPNMA+ ++AL+L+ ++M+PV+ +I  +++    + 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  85   GESGTAAPMALDAVLGVVERGV-APLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSE  143
            ++ +             VE+G+ +P R F+ +N+   +  FF  +A+   G+++   L E
Sbjct  90   SDRDFYQK---------VEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKE  138

Query  144  DNLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLF  203
            D++++L PAF +++L AAF++GFLLYLPFI IDLI+SNILLA+GMMMVSPVTIS+P+K++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  204  LFVMVDGWTRLIQ  216
            LF++V+GW ++++
Sbjct  199  LFILVGGWQKIFE  211

95) bscR in NC_002928


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  150 bits (552),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 86/193 (45%), Positives = 144/193 (75%), Gaps = 12/193 (6%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + TSFLKI +VL++++NALG+QQVPPNMA+ ++AL+L+ ++M+PV+ +I  +++    + 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  85   GESGTAAPMALDAVLGVVERGV-APLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSE  143
            ++ +             VE+G+ +P R F+ +N+   +  FF  +A+   G+++   L E
Sbjct  90   SDRDFYQK---------VEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKE  138

Query  144  DNLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLF  203
            D++++L PAF +++L AAF++GFLLYLPFI IDLI+SNILLA+GMMMVSPVTIS+P+K++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  204  LFVMVDGWTRLIQ  216
            LF++V+GW ++++
Sbjct  199  LFILVGGWQKIFE  211

96) bscR in NC_018828


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  150 bits (552),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 86/193 (45%), Positives = 144/193 (75%), Gaps = 12/193 (6%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + TSFLKI +VL++++NALG+QQVPPNMA+ ++AL+L+ ++M+PV+ +I  +++    + 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  85   GESGTAAPMALDAVLGVVERGV-APLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSE  143
            ++ +             VE+G+ +P R F+ +N+   +  FF  +A+   G+++   L E
Sbjct  90   SDRDFYQK---------VEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKE  138

Query  144  DNLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLF  203
            D++++L PAF +++L AAF++GFLLYLPFI IDLI+SNILLA+GMMMVSPVTIS+P+K++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  204  LFVMVDGWTRLIQ  216
            LF++V+GW ++++
Sbjct  199  LFILVGGWQKIFE  211

97) rscR in NC_012660


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  150 bits (552),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 85/195 (44%), Positives = 149/195 (77%), Gaps = 8/195 (4%)

Query  21   MPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFIMAPVGYEIAESVK  80
            +P+++V+ T+FLKIVIVL I +NA+G+QQVPP+MAI ++AL  T+FIM+PV   I +++ 
Sbjct  24   LPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIE  83

Query  81   ALPLDLSNVQTLLQTANEAIKPLRAFMLRN-IDPDVLTHLLENTARLWPAQMAQEV--QR  137
              P++ S+ +   +  +  + P R F+ +N ++ D+   ++E++A+    +++++   + 
Sbjct  84   KNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDI--SFFESAAK---KKLGNDTVLKE  138

Query  138  EDLILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKLL  197
            + +++L+PAF L+QL+A+F +GFL+Y+PFI IDLI+SN+LLALGM MVSP+TIS+P+K+L
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  198  LFVMVSGWSRLLDSL  212
            LF++V+GW ++++ L
Sbjct  199  LFILVGGWQKIFEYL  213

98) ssaR in NC_012751


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  150 bits (551),  Expect = 6e-38, Method: Compositional matrix adjust.
 Identities = 97/184 (53%), Positives = 143/184 (78%), Gaps = 2/184 (1%)

Query  24   VVMGTCFLKLSVVFSLLRNALGVQQTPPNIAIYGLALVLTIFIMAPVGLEVNESLKGEKL  83
            VV+GT FLK+ +V+++L+NALG+QQ PPN+AI ++ALVLT+FIM+PV L +N+++  + +
Sbjct  28   VVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPI  87

Query  84   SQDFGTFVEQINSKALDPYRQFLLHNTSSEQINFFSDMIKNNWPKKYRDKVASDSLLILM  143
            +     F ++++   L PYR FL  NT   +I+FF    K++  +     +  DS++IL+
Sbjct  88   NYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  144  PAFTVSQLIEAFKIGLLLYLPFVAIDLIVSNILLAmgmmmmspmTISLPFKILIFLLVGG  203
            PAFT++QL  AFK+G+LLYLPF+AIDLI+SNILLA+GMMM+SP+TIS+PFKIL+F+LVGG
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  204  WDMI  207
            W+ I
Sbjct  206  WQKI  209

99) hrcR in NC_016830


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  150 bits (551),  Expect = 6e-38, Method: Compositional matrix adjust.
 Identities = 86/208 (42%), Positives = 153/208 (74%), Gaps = 2/208 (0%)

Query  5    GVDPFLLALFIGGISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAAT  64
            G +P+LL +++  +S++P++++I ++FLKI IVL I +NA+G+QQVPPNMA+ ++AL  T
Sbjct  8    GGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLT  67

Query  65   LFIMAPVGHNIAEQLKERPLDFSNTEALQGSALNAIKPLQAFMSRNTNPDILAHLLENTQ  124
            +FIM+PV  +I +++   P+++S+ +  Q      + P + F+ +NT    ++ +   ++
Sbjct  68   MFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK  127

Query  125  RMWPKERAEQASRDDLMLLIPAFMLSELEAGFQMGFLIYIPFIVIDLIVSNLLLALGMQM  184
            +   ++   +   D + +L+PAF L++LEA+F++GFL+Y+PFI IDLI+SN+LLALGM M
Sbjct  128  KKLGNDTVLKE--DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMM  185

Query  185  VAPMTISLPLKLLIFVLVQGWTQLLDSL  212
            V+P+TIS+P+K+L+F+LV GW ++++ L
Sbjct  186  VSPVTISIPFKILLFILVGGWQKIFEYL  213

100) bscR in NC_018829


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  149 bits (547),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 85/193 (45%), Positives = 144/193 (75%), Gaps = 12/193 (6%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + TSFLKI +VL++++NALG+QQVPPNMA+ ++AL+L+ ++M+PV+ +I  +++    + 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  85   GESGTAAPMALDAVLGVAERGV-GPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSE  143
            ++ +    +         E+G+ +P R F+ +N+   +  FF  +A+   G+++   L E
Sbjct  90   SDRDFYQKV---------EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKE  138

Query  144  DNLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLF  203
            D++++L PAF +++L AAF++GFLLYLPFI IDLI+SNILLA+GMMMVSPVTIS+P+K++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  204  LFVMVDGWTRLIQ  216
            LF++V+GW ++++
Sbjct  199  LFILVGGWQKIFE  211

101) bscR in NC_018518


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  149 bits (547),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 85/193 (45%), Positives = 144/193 (75%), Gaps = 12/193 (6%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + TSFLKI +VL++++NALG+QQVPPNMA+ ++AL+L+ ++M+PV+ +I  +++    + 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  85   GESGTAAPMALDAVLGVAERGV-GPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSE  143
            ++ +    +         E+G+ +P R F+ +N+   +  FF  +A+   G+++   L E
Sbjct  90   SDRDFYQKV---------EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKE  138

Query  144  DNLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLF  203
            D++++L PAF +++L AAF++GFLLYLPFI IDLI+SNILLA+GMMMVSPVTIS+P+K++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  204  LFVMVDGWTRLIQ  216
            LF++V+GW ++++
Sbjct  199  LFILVGGWQKIFE  211

102) bscR in NC_017223


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  149 bits (547),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 85/193 (45%), Positives = 144/193 (75%), Gaps = 12/193 (6%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + TSFLKI +VL++++NALG+QQVPPNMA+ ++AL+L+ ++M+PV+ +I  +++    + 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  85   GESGTAAPMALDAVLGVAERGV-GPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSE  143
            ++ +    +         E+G+ +P R F+ +N+   +  FF  +A+   G+++   L E
Sbjct  90   SDRDFYQKV---------EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKE  138

Query  144  DNLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLF  203
            D++++L PAF +++L AAF++GFLLYLPFI IDLI+SNILLA+GMMMVSPVTIS+P+K++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  204  LFVMVDGWTRLIQ  216
            LF++V+GW ++++
Sbjct  199  LFILVGGWQKIFE  211

103) bscR in NC_002929


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  149 bits (547),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 85/193 (45%), Positives = 144/193 (75%), Gaps = 12/193 (6%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            + TSFLKI +VL++++NALG+QQVPPNMA+ ++AL+L+ ++M+PV+ +I  +++    + 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  85   GESGTAAPMALDAVLGVAERGV-GPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSE  143
            ++ +    +         E+G+ +P R F+ +N+   +  FF  +A+   G+++   L E
Sbjct  90   SDRDFYQKV---------EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKE  138

Query  144  DNLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLF  203
            D++++L PAF +++L AAF++GFLLYLPFI IDLI+SNILLA+GMMMVSPVTIS+P+K++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  204  LFVMVDGWTRLIQ  216
            LF++V+GW ++++
Sbjct  199  LFILVGGWQKIFE  211

104) yscR in NC_007645


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  147 bits (540),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 93/202 (47%), Positives = 158/202 (79%), Gaps = 2/202 (0%)

Query  5    QAIPLIGTLVLLSLIPFIAIMTTSFIKLAVVFSLLRNALGIQQIPPNMALYGLAIVLSIY  64
            Q+I LI  + LLS++P++ ++ TSF+K+ +V+++L+NALGIQQ+PPNMA+ ++A+VL+++
Sbjct  10   QPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMF  69

Query  65   IMAPVGYQIADTVKEKGFDLSQSESLKELANSAIDPMSEFLTKHSSEKERGFFLESAETL  124
            IM+PV  +I D +  + ++ S+ +  + + ++ + P   FL K++ EK+ +FF  +A   
Sbjct  70   IMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK  129

Query  125  WPKEYAARLDTNSMLVLVPSFTISELKSAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVS  184
              ++  + L  +S+++L+P+FT+++L +AF +GFLLYLPFIAIDLI+SNILLA+GMMMVS
Sbjct  130  LGND--TVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVS  187

Query  185  PMTISlpfklllfvllDGWTRL  206
            P+TIS+PFK+LLF+L++GW ++
Sbjct  188  PVTISIPFKILLFILVGGWQKI  209

105) sctR in NC_005126


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  146 bits (537),  Expect = 8e-37, Method: Compositional matrix adjust.
 Identities = 91/183 (50%), Positives = 147/183 (81%), Gaps = 2/183 (1%)

Query  25   VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQDYLRQNEVS  84
            V++TSFLK+ +V+++L+NALG+QQ+PPNMA+ ++A++LT+++M+PV +  +D + +N ++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   FSNAQSVDKFVEEGLTPYRNFLKQHIKPSERTFFIDSTRQIWPSQYADRLEPDSLLILLP  144
            +S+ +  +K  +  L+PYR FLK++    + +FF  ++++   ++    L  DS++ILLP
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLP  146

Query  145  AFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+++L  AF +GFLLYLPFIAIDLIISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  205  TRL  207
             ++
Sbjct  207  QKI  209

106) sctR in NC_012962


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  146 bits (536),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 90/184 (49%), Positives = 147/184 (80%), Gaps = 2/184 (1%)

Query  24   AVMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQDYLRQNEV  83
             V++TSFLK+ +V+++L+NALG+QQ+PPNMA+ ++A++LT+++M+PV +  +D + +N +
Sbjct  28   VVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPI  87

Query  84   SFSNAQSVEKFLEEGMAPYRNFLKQHIKSSERTFFIDSTRQIWPSQYANRLEPDSLLILL  143
            ++S+ +  +K  +  ++PYR FLK++    + +FF  ++++   ++    L  DS++ILL
Sbjct  88   NYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILL  145

Query  144  PAFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDG  203
            PAFT+++L  AF +GFLLYLPFIAIDLIISNILLA+GMMMVSP+TIS+PFK+LLF+L++G
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  204  WTRL  207
            W ++
Sbjct  206  WQKI  209

107) G655_16715 in NC_020912


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  146 bits (536),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 88/188 (47%), Positives = 150/188 (80%), Gaps = 2/188 (1%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P++ V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +   D + 
Sbjct  24   LPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIE  83

Query  80   NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL  139
            ++ ++ SD    ++  +  ++PYR FLK++  E++ +FF  ++++   ++    L  DS+
Sbjct  84   KNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSI  141

Query  140  LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            +ILLPAFT+++L  AF +GFL+YLPFIAIDLIISNILLA+GMMMVSP+TIS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  200  llDGWARL  207
            L++GW ++
Sbjct  202  LVGGWQKI  209

108) pscR in NC_017548


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  146 bits (536),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 88/188 (47%), Positives = 150/188 (80%), Gaps = 2/188 (1%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P++ V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +   D + 
Sbjct  24   LPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIE  83

Query  80   NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL  139
            ++ ++ SD    ++  +  ++PYR FLK++  E++ +FF  ++++   ++    L  DS+
Sbjct  84   KNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSI  141

Query  140  LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            +ILLPAFT+++L  AF +GFL+YLPFIAIDLIISNILLA+GMMMVSP+TIS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  200  llDGWARL  207
            L++GW ++
Sbjct  202  LVGGWQKI  209

109) pscR in NC_017549


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  146 bits (536),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 88/188 (47%), Positives = 150/188 (80%), Gaps = 2/188 (1%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P++ V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +   D + 
Sbjct  24   LPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIE  83

Query  80   NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL  139
            ++ ++ SD    ++  +  ++PYR FLK++  E++ +FF  ++++   ++    L  DS+
Sbjct  84   KNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSI  141

Query  140  LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            +ILLPAFT+++L  AF +GFL+YLPFIAIDLIISNILLA+GMMMVSP+TIS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  200  llDGWARL  207
            L++GW ++
Sbjct  202  LVGGWQKI  209

110) pscR in NC_002516


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  146 bits (536),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 88/188 (47%), Positives = 150/188 (80%), Gaps = 2/188 (1%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P++ V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +   D + 
Sbjct  24   LPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIE  83

Query  80   NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL  139
            ++ ++ SD    ++  +  ++PYR FLK++  E++ +FF  ++++   ++    L  DS+
Sbjct  84   KNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSI  141

Query  140  LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            +ILLPAFT+++L  AF +GFL+YLPFIAIDLIISNILLA+GMMMVSP+TIS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  200  llDGWARL  207
            L++GW ++
Sbjct  202  LVGGWQKI  209

111) ssaR in NC_021577


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  146 bits (536),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 88/188 (47%), Positives = 150/188 (80%), Gaps = 2/188 (1%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P++ V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +   D + 
Sbjct  24   LPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIE  83

Query  80   NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL  139
            ++ ++ SD    ++  +  ++PYR FLK++  E++ +FF  ++++   ++    L  DS+
Sbjct  84   KNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSI  141

Query  140  LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            +ILLPAFT+++L  AF +GFL+YLPFIAIDLIISNILLA+GMMMVSP+TIS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  200  llDGWARL  207
            L++GW ++
Sbjct  202  LVGGWQKI  209

112) pscR in NC_008463


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  146 bits (536),  Expect = 9e-37, Method: Compositional matrix adjust.
 Identities = 88/188 (47%), Positives = 150/188 (80%), Gaps = 2/188 (1%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P++ V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +   D + 
Sbjct  24   LPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIE  83

Query  80   NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL  139
            ++ ++ SD    ++  +  ++PYR FLK++  E++ +FF  ++++   ++    L  DS+
Sbjct  84   KNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSI  141

Query  140  LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            +ILLPAFT+++L  AF +GFL+YLPFIAIDLIISNILLA+GMMMVSP+TIS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  200  llDGWARL  207
            L++GW ++
Sbjct  202  LVGGWQKI  209

113) PADK2_17235 in NC_018080


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  145 bits (535),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 87/188 (47%), Positives = 150/188 (80%), Gaps = 2/188 (1%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P++ V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +   D + 
Sbjct  24   LPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIE  83

Query  80   NHDVSLNDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL  139
            ++ ++ +D    ++  +  ++PYR FLK++  E++ +FF  ++++   ++    L  DS+
Sbjct  84   KNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSI  141

Query  140  LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            +ILLPAFT+++L  AF +GFL+YLPFIAIDLIISNILLA+GMMMVSP+TIS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  200  llDGWARL  207
            L++GW ++
Sbjct  202  LVGGWQKI  209

114) Marme_1071 in NC_015276


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  145 bits (535),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 81/189 (43%), Positives = 136/189 (72%), Gaps = 2/189 (1%)

Query  22   PIMLIVCSAFLKISMVLMITRNAMGVQQVPPNMAIYGIALAATMFVMAPVFSDIGNKVKE  81
            PI +++ ++FLKI +VL I +NA+G+QQVPPNMAI ++AL  TMF+M+PV+  I +++  
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  82   TPPDFSSLEGMQTSANKIVGPLQAFMSRNSNPDVTTHMMDNTARLWPKEMASKVTKDDLM  141
             P ++S  +  Q   + I++P + F+ +N+     +     + +   ++   K   D + 
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLK--EDSIF  142

Query  142  IVIPSFMLSELKAGLQIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKILLFVL  201
            I++P+F L++L A++++GFL+Y+PFI IDLI+SN+LLALGM MVSP+TIS+P+KILLF+L
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  202  VDGWGRLLD  210
            V+GW ++++
Sbjct  203  VGGWQKIFE  211

115) pscR in NC_011770


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  143 bits (526),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 86/182 (48%), Positives = 145/182 (80%), Gaps = 2/182 (1%)

Query  26   MATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRNHDVSL  85
            ++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +   D + ++ ++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  86   SDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLPA  145
            SD    ++  +  ++PYR FLK++  E++ +FF  ++++   ++    L  DS++ILLPA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPA  147

Query  146  FTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGWA  205
            FT+++L  AF +GFL+YLPFIAIDLIISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW 
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

Query  206  RL  207
            ++
Sbjct  208  KI  209

116) hrcR in NC_015856


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  143 bits (526),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 76/183 (42%), Positives = 131/183 (72%), Gaps = 3/183 (1%)

Query  25   MVVTSYTKIVVVLGLLRNALGLQQVPPTSVLNGVAIIISCFVMAPVGMEAVKHAQLSSEQ  84
            ++ TS+ KIV+VLG+L+NALG+QQVPP   + +VA++++ F+M+PV +    + + ++ +
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   TAGSQIMPLFDAAR-EPFRTFLRKHTSEREKAFFMRSARQIWPPERAAELKPDDLIVLAP  143
             ++ ++    + +   P+R FL+K+T E++ +FF  +A++    +    LK D +++L P
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIFILLP  146

Query  144  AFVLSELTAAFKIGFLLYLCFIVIDLVIANVLMALGLSQVNPSNVAIPFKLLLFISLDGW  203
            AF L++L AAFK+GFLLYL FI IDL+I+N+L+ALG+  V+P  ++IPFK+LLFI ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  204  STL  206
              +
Sbjct  207  QKI  209

117) BC1001_6056 in NC_015137


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  143 bits (525),  Expect = 7e-36, Method: Compositional matrix adjust.
 Identities = 86/213 (41%), Positives = 155/213 (73%), Gaps = 6/213 (2%)

Query  1    MVQFSDITG----LLIVIVAISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLN  56
            M Q+S I G    L++++  +S++P+  ++ TS+ KIV+VLG+L+NALG+QQVPPNM + 
Sbjct  1    MSQLSVIGGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAIT  60

Query  57   GVAILVSLYVMAPVgmqamqsmqgqaiagqPTQALIQVFSAAREPFRTFLQKHTNEREKR  116
            +VA+++++++M+PV ++  ++++ ++I     +   +V  +   P+R FL+K+T E++  
Sbjct  61   SVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS  120

Query  117  FFIRSANVVWPKDAAASLHENDLIVLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVL  176
            FF  +A+    +D+   L E+ +++L PAFTL +L  AFK+GFLLY++FI IDLII+N+L
Sbjct  121  FFESAAKKKLGNDTV--LKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  177  LAMGLNQVTPTNVAIPFKLLLFVVMDGWSTLIH  209
            LA+G+  V+P  ++IPFK+LLF++++GW  +++
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGWQKIFE  211

118) BUPH_00158 in NC_018672


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (523),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 86/213 (41%), Positives = 154/213 (73%), Gaps = 6/213 (2%)

Query  1    MVQFSDITG----LLIVIVAISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLN  56
            M Q+S I G    L++++  +S++P+  ++ TS+ KIV+VLG+L+NALG+QQVPPNM + 
Sbjct  1    MSQLSVIGGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAIT  60

Query  57   GVAILVSLYVMAPVgmqamqsmqgqaiagqPTQALIQVFSTAREPFRTFLQKHTNEREKR  116
            +VA+++++++M+PV ++  ++++ ++I     +   +V      P+R FL+K+T E++  
Sbjct  61   SVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS  120

Query  117  FFIRSANVVWPKDAAASLHENDLIVLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVL  176
            FF  +A+    +D+   L E+ +++L PAFTL +L  AFK+GFLLY++FI IDLII+N+L
Sbjct  121  FFESAAKKKLGNDTV--LKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  177  LAMGLNQVTPTNVAIPFKLLLFVVMDGWSTLIH  209
            LA+G+  V+P  ++IPFK+LLF++++GW  +++
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGWQKIFE  211

119) yscR in NC_010157


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 88/183 (49%), Positives = 147/183 (81%), Gaps = 2/183 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +  +D ++ N ++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             ++ +  +K  +  L+PYR+FLK++   ++ SFF  ++K+   ++    L  DS+FILLP
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLP  146

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+++L  AF +GFL+YLPFI IDL+ISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  205  TRL  207
             ++
Sbjct  207  QKI  209

120) YPA_CD0018 in NC_008122


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 88/183 (49%), Positives = 147/183 (81%), Gaps = 2/183 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +  +D ++ N ++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             ++ +  +K  +  L+PYR+FLK++   ++ SFF  ++K+   ++    L  DS+FILLP
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLP  146

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+++L  AF +GFL+YLPFI IDL+ISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  205  TRL  207
             ++
Sbjct  207  QKI  209

121) yscR in NC_005813


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 88/183 (49%), Positives = 147/183 (81%), Gaps = 2/183 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +  +D ++ N ++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             ++ +  +K  +  L+PYR+FLK++   ++ SFF  ++K+   ++    L  DS+FILLP
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLP  146

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+++L  AF +GFL+YLPFI IDL+ISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  205  TRL  207
             ++
Sbjct  207  QKI  209

122) yscR in NC_003131


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 88/183 (49%), Positives = 147/183 (81%), Gaps = 2/183 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +  +D ++ N ++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             ++ +  +K  +  L+PYR+FLK++   ++ SFF  ++K+   ++    L  DS+FILLP
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLP  146

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+++L  AF +GFL+YLPFI IDL+ISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  205  TRL  207
             ++
Sbjct  207  QKI  209

123) yscR in NC_017153


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 88/183 (49%), Positives = 147/183 (81%), Gaps = 2/183 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +  +D ++ N ++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             ++ +  +K  +  L+PYR+FLK++   ++ SFF  ++K+   ++    L  DS+FILLP
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLP  146

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+++L  AF +GFL+YLPFI IDL+ISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  205  TRL  207
             ++
Sbjct  207  QKI  209

124) yscR in NC_017157


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 88/183 (49%), Positives = 147/183 (81%), Gaps = 2/183 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +  +D ++ N ++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             ++ +  +K  +  L+PYR+FLK++   ++ SFF  ++K+   ++    L  DS+FILLP
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLP  146

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+++L  AF +GFL+YLPFI IDL+ISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  205  TRL  207
             ++
Sbjct  207  QKI  209

125) YPDSF_3973 in NC_009377


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 88/183 (49%), Positives = 147/183 (81%), Gaps = 2/183 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +  +D ++ N ++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             ++ +  +K  +  L+PYR+FLK++   ++ SFF  ++K+   ++    L  DS+FILLP
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLP  146

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+++L  AF +GFL+YLPFI IDL+ISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  205  TRL  207
             ++
Sbjct  207  QKI  209

126) yscR in NC_014017


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 88/183 (49%), Positives = 147/183 (81%), Gaps = 2/183 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +  +D ++ N ++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             ++ +  +K  +  L+PYR+FLK++   ++ SFF  ++K+   ++    L  DS+FILLP
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLP  146

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+++L  AF +GFL+YLPFI IDL+ISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  205  TRL  207
             ++
Sbjct  207  QKI  209

127) pYV0071 in NC_006153


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 88/183 (49%), Positives = 147/183 (81%), Gaps = 2/183 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +  +D ++ N ++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             ++ +  +K  +  L+PYR+FLK++   ++ SFF  ++K+   ++    L  DS+FILLP
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLP  146

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+++L  AF +GFL+YLPFI IDL+ISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  205  TRL  207
             ++
Sbjct  207  QKI  209

128) YPTS_4289 in NC_010635


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 88/183 (49%), Positives = 147/183 (81%), Gaps = 2/183 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +  +D ++ N ++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             ++ +  +K  +  L+PYR+FLK++   ++ SFF  ++K+   ++    L  DS+FILLP
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLP  146

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+++L  AF +GFL+YLPFI IDL+ISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  205  TRL  207
             ++
Sbjct  207  QKI  209

129) rscR in NC_017911


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 92/209 (45%), Positives = 163/209 (78%), Gaps = 8/209 (3%)

Query  7    DPVVLAVFLGALSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLF  66
            +P++L V++  LS++P+++V+ T+FLKIVIVL I +NA+G+QQVPP+MAI ++AL  T+F
Sbjct  10   QPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMF  69

Query  67   IMAPVGYEIAENLKASPLDMTNVQTFLSTGNEAINPLRAFMLRN-VDPDVLTHLLENTAR  125
            IM+PV   I +N+  +P++ ++ + +    +  ++P R F+ +N ++ D+   ++E++A+
Sbjct  70   IMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDI--SFFESAAK  127

Query  126  LWPAKMAQE--VQREDLILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQ  183
                K++++  ++ + +++L+PAF L+QL+A+F +GFL+Y+PFI IDLI+SN+LLALGM 
Sbjct  128  ---KKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMM  184

Query  184  MVSPMTISlplklllfvlVSGWSRLLDSL  212
            MVSP+TIS+P+K+LLF+LV+GW ++++ L
Sbjct  185  MVSPVTISIPFKILLFILVGGWQKIFEYL  213

130) yscR in NC_008791


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (523),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 88/183 (49%), Positives = 147/183 (81%), Gaps = 2/183 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +  +D ++ N ++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             ++ +  +K  +  L+PYR+FLK++   ++ SFF  ++K+   ++    L  DS+FILLP
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLP  146

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+++L  AF +GFL+YLPFI IDL+ISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  205  TRL  207
             ++
Sbjct  207  QKI  209

131) YE105_P0026 in NC_015475


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (523),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 88/183 (49%), Positives = 147/183 (81%), Gaps = 2/183 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +  +D ++ N ++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             ++ +  +K  +  L+PYR+FLK++   ++ SFF  ++K+   ++    L  DS+FILLP
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLP  146

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+++L  AF +GFL+YLPFI IDL+ISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  205  TRL  207
             ++
Sbjct  207  QKI  209

132) Y11_p0741 in NC_017565


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  142 bits (523),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 88/183 (49%), Positives = 147/183 (81%), Gaps = 2/183 (1%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +  +D ++ N ++
Sbjct  29   VIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN  88

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             ++ +  +K  +  L+PYR+FLK++   ++ SFF  ++K+   ++    L  DS+FILLP
Sbjct  89   YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLP  146

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFT+++L  AF +GFL+YLPFI IDL+ISNILLA+GMMMVSP+TIS+PFK+LLF+L++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  205  TRL  207
             ++
Sbjct  207  QKI  209

133) hrcR in NC_010694


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  141 bits (520),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 148/194 (77%), Gaps = 4/194 (2%)

Query  18   LSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQ  77
            LS++P+++++ T FLKI +VL I +NA+G+QQVPPNMA+ ++AL  T+F+M+PV+ ++++
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  78   QFSQSPADLSSMDSLKNSVTHGV-APLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSVS  136
            ++ ++P + S  D + + V +G+ +P + F+  NT    +  ++  + +   ++    + 
Sbjct  81   NIEKNPINYSDRD-FYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLK  137

Query  137  KDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKM  196
             D++++++PAF L++L+A+FK+GFL+Y+PFI IDLI+SN+LLALGM MV+P+T+S+P+K+
Sbjct  138  EDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  197  LLFVLINGWTRLLD  210
            LLF+L+ GW ++++
Sbjct  198  LLFILVGGWQKIFE  211

134) ascR in NC_009350


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  141 bits (517),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 91/188 (49%), Positives = 151/188 (81%), Gaps = 4/188 (2%)

Query  21   PFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVMAPVGFATQDYLRQ  80
            P++ V++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++++M+PV +  +D + +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  81   NEVSLAKSESVEKFLDEGI-APYRDFLKKQIKPREHAFFIDSTKQLWPSKYADRLEPDSL  139
            N ++ +  +  +K +++GI +PYR FLKK+   ++ +FF  ++K+   +     L  DS+
Sbjct  85   NPINYSDRDFYQK-VEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGN--DTVLKEDSI  141

Query  140  LILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfv  199
            +ILLPAFT+++L  AF +GFL+YLPFIAIDLIISNILLA+GMMMVSP+TIS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  200  llDGWARL  207
            L++GW ++
Sbjct  202  LVGGWQKI  209

135) hrcR in NC_006834


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  141 bits (517),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 81/192 (43%), Positives = 135/192 (71%), Gaps = 9/192 (4%)

Query  32   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF----K  87
            P+  ++ TS+ KIV+VLG+L+NA+G+QQVPPNM + +VAL+++ F+M+PV +       K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  88   AAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKSD  147
             + NY+      ++    ++   P+R FL K+T E++ +FF  +A++   +D  T LK D
Sbjct  85   NPINYSDRDFYQKVE---QGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKED  139

Query  148  DLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLL  207
             ++IL PAFTL++L  AF++GFLLYL FI IDL+++N L+A+G+  V+P  ++IPFK+LL
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  208  FVAMDGWSMLIH  219
            F+ ++GW  +++
Sbjct  200  FILVGGWQKIFE  211

136) XOO_0095 in NC_007705


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  140 bits (515),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 81/192 (43%), Positives = 135/192 (71%), Gaps = 9/192 (4%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF----K  75
            P+  ++ TS+ KIV+VLG+L+NA+G+QQVPPNM + +VAL+++ F+M+PV +       K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  76   AAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKSD  135
             + NY+      ++    ++   P+R FL K+T E++ +FF  +A++   +D  T LK D
Sbjct  85   NPINYSDRDFYQKVE---QGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKED  139

Query  136  DLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLL  195
             ++IL PAFTL++L  AF++GFLLYL FI IDL+++N L+A+G+  V+P  ++IPFK+LL
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  196  FVAMDGWSMLIH  207
            F+ ++GW  +++
Sbjct  200  FILVGGWQKIFE  211

137) epaP in NC_010717


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  140 bits (515),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 81/192 (43%), Positives = 135/192 (71%), Gaps = 9/192 (4%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF----K  75
            P+  ++ TS+ KIV+VLG+L+NA+G+QQVPPNM + +VAL+++ F+M+PV +       K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  76   AAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKSD  135
             + NY+      ++    ++   P+R FL K+T E++ +FF  +A++   +D  T LK D
Sbjct  85   NPINYSDRDFYQKVE---QGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKED  139

Query  136  DLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLL  195
             ++IL PAFTL++L  AF++GFLLYL FI IDL+++N L+A+G+  V+P  ++IPFK+LL
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  196  FVAMDGWSMLIH  207
            F+ ++GW  +++
Sbjct  200  FILVGGWQKIFE  211

138) hrcR in NC_003919


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  140 bits (513),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 80/192 (42%), Positives = 135/192 (71%), Gaps = 9/192 (4%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF----K  75
            P+  ++ TS+ KIV+VLG+L+NA+G+QQVPPNM + +VAL+++ F+M+PV +       K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  76   AAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSD  135
             + NY+      +V    ++   P+R FL K+T E++ +FF  +A++   +D  + LK D
Sbjct  85   NPINYSDRDFYQKVE---QGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKED  139

Query  136  DLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLL  195
             +++L PAFTL++L  AF++GFLLYL FI IDL+++N L+A+G+  V+P  ++IPFK+LL
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  196  FVAMDGWSMLIH  207
            F+ ++GW  +++
Sbjct  200  FILVGGWQKIFE  211

139) hrcR in NC_016010


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  140 bits (513),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 80/192 (42%), Positives = 135/192 (71%), Gaps = 9/192 (4%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF----K  75
            P+  ++ TS+ KIV+VLG+L+NA+G+QQVPPNM + +VAL+++ F+M+PV +       K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  76   AAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSD  135
             + NY+      +V    ++   P+R FL K+T E++ +FF  +A++   +D  + LK D
Sbjct  85   NPINYSDRDFYQKVE---QGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKED  139

Query  136  DLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLL  195
             +++L PAFTL++L  AF++GFLLYL FI IDL+++N L+A+G+  V+P  ++IPFK+LL
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  196  FVAMDGWSMLIH  207
            F+ ++GW  +++
Sbjct  200  FILVGGWQKIFE  211

140) XAC29_02060 in NC_020800


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  140 bits (513),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 80/192 (42%), Positives = 135/192 (71%), Gaps = 9/192 (4%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF----K  75
            P+  ++ TS+ KIV+VLG+L+NA+G+QQVPPNM + +VAL+++ F+M+PV +       K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  76   AAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSD  135
             + NY+      +V    ++   P+R FL K+T E++ +FF  +A++   +D  + LK D
Sbjct  85   NPINYSDRDFYQKVE---QGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKED  139

Query  136  DLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLL  195
             +++L PAFTL++L  AF++GFLLYL FI IDL+++N L+A+G+  V+P  ++IPFK+LL
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  196  FVAMDGWSMLIH  207
            F+ ++GW  +++
Sbjct  200  FILVGGWQKIFE  211

141) hrcR in NC_007508


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  140 bits (513),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 80/192 (42%), Positives = 135/192 (71%), Gaps = 9/192 (4%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF----K  75
            P+  ++ TS+ KIV+VLG+L+NA+G+QQVPPNM + +VAL+++ F+M+PV +       K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  76   AAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSD  135
             + NY+      +V    ++   P+R FL K+T E++ +FF  +A++   +D  + LK D
Sbjct  85   NPINYSDRDFYQKVE---QGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKED  139

Query  136  DLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLL  195
             +++L PAFTL++L  AF++GFLLYL FI IDL+++N L+A+G+  V+P  ++IPFK+LL
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  196  FVAMDGWSMLIH  207
            F+ ++GW  +++
Sbjct  200  FILVGGWQKIFE  211

142) hrcR in NC_020815


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  140 bits (513),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 80/192 (42%), Positives = 135/192 (71%), Gaps = 9/192 (4%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF----K  75
            P+  ++ TS+ KIV+VLG+L+NA+G+QQVPPNM + +VAL+++ F+M+PV +       K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  76   AAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSD  135
             + NY+      +V    ++   P+R FL K+T E++ +FF  +A++   +D  + LK D
Sbjct  85   NPINYSDRDFYQKVE---QGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKED  139

Query  136  DLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLL  195
             +++L PAFTL++L  AF++GFLLYL FI IDL+++N L+A+G+  V+P  ++IPFK+LL
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  196  FVAMDGWSMLIH  207
            F+ ++GW  +++
Sbjct  200  FILVGGWQKIFE  211

143) hrcR in NC_017267


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  139 bits (512),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 80/187 (43%), Positives = 132/187 (71%), Gaps = 9/187 (4%)

Query  20   PFAALVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF----K  75
            P+  ++ TS+ KIV+VLG+L+NA+G+QQVPPNM + +VAL+++ F+M+PV +       K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  76   AAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSD  135
             + NY+      ++    ++   P+R FL K+T E++ +FF  +A++   +D  + LK D
Sbjct  85   NPINYSDRDFYQKVE---QGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKED  139

Query  136  DLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLL  195
             ++IL PAFTL++L  AF++GFLLYL FI IDL+++N L+A+G+  V+P  ++IPFK+LL
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  196  FVAMDGW  202
            F+ ++GW
Sbjct  200  FILVGGW  206

144) M892_04535 in NC_022269


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  139 bits (511),  Expect = 9e-35, Method: Compositional matrix adjust.
 Identities = 94/187 (51%), Positives = 146/187 (79%), Gaps = 2/187 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVTQ  80
            P++ +++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++FIM+PV +   D + +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  81   HEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWPQKYVDRLESDSll  140
            + I+  D +  + + ++ L PYR FLKK+  E +  FF  AA+    +  V  L  DS++
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIF  142

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +LLPAFT+++L  AF +GFLLYLPFIAIDLI+SNILLA+GMMMVSP+TIS+PFK+LLF+L
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  201  lDGWTKL  207
            ++GW K+
Sbjct  203  VGGWQKI  209

145) VIBHAR_01726 in NC_009783


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  139 bits (511),  Expect = 9e-35, Method: Compositional matrix adjust.
 Identities = 94/187 (51%), Positives = 146/187 (79%), Gaps = 2/187 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVTQ  80
            P++ +++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++FIM+PV +   D + +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  81   HEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWPQKYVDRLESDSll  140
            + I+  D +  + + ++ L PYR FLKK+  E +  FF  AA+    +  V  L  DS++
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIF  142

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +LLPAFT+++L  AF +GFLLYLPFIAIDLI+SNILLA+GMMMVSP+TIS+PFK+LLF+L
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  201  lDGWTKL  207
            ++GW K+
Sbjct  203  VGGWQKI  209

146) yscR in NC_016642


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  138 bits (507),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 83/180 (47%), Positives = 133/180 (74%), Gaps = 2/180 (1%)

Query  28   TSFIKLSVVLLLVRNALGVQQIPPNMALNALAIILSGYIMLPVFLQTFEILEKGNYSIAT  87
            TSF+K+ +VL +++NALG+QQ+PPNMA+ ++A++L+ +IM PV+L+  + +EK   + + 
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  88   VEDMKTTFVAAKGPLEEFLAKHADSKEKAFFLEASRQLWPAEVADSMSADSIAILLPAYT  147
             +  +    +  +P   FL K++  K+ +FF  A+++    +    +  DSI ILLPA+T
Sbjct  92   RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIFILLPAFT  149

Query  148  VSQLREAFEIGFLLYLPFLAIDLVVSNILLAMGMMMVSPLTISLPFKLFLFVAVDGWSRL  207
            ++QL  AF +GFLLYLPF+AIDL++SNILLA+GMMMVSP+TIS+PFK++LF+ V+GW ++
Sbjct  150  LGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKI  209

147) XC_3016 in NC_007086


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  138 bits (507),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 81/192 (43%), Positives = 134/192 (70%), Gaps = 9/192 (4%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF----K  75
            P+  ++ TS+ KIV+VLG+L+NA+G+QQVPPNM + +VAL+++ F+M+PV +       K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  76   AAQNYSPGADNSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPD  135
             + NYS      +V    ++   P+R FL K+T E++ +FF  +A++   +D    LK D
Sbjct  85   NPINYSDRDFYQKVE---QGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKED  139

Query  136  DLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLL  195
             +++L PAFTL++L  AF++GFLLYL FI IDL+++N L+A+G+  V+P  ++IPFK+LL
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  196  FVALDGWSMLIH  207
            F+ ++GW  +++
Sbjct  200  FILVGGWQKIFE  211

148) hrcR in NC_003902


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  138 bits (507),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 81/192 (43%), Positives = 134/192 (70%), Gaps = 9/192 (4%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF----K  75
            P+  ++ TS+ KIV+VLG+L+NA+G+QQVPPNM + +VAL+++ F+M+PV +       K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  76   AAQNYSPGADNSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPD  135
             + NYS      +V    ++   P+R FL K+T E++ +FF  +A++   +D    LK D
Sbjct  85   NPINYSDRDFYQKVE---QGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKED  139

Query  136  DLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLL  195
             +++L PAFTL++L  AF++GFLLYL FI IDL+++N L+A+G+  V+P  ++IPFK+LL
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  196  FVALDGWSMLIH  207
            F+ ++GW  +++
Sbjct  200  FILVGGWQKIFE  211

149) hrcR in NC_017271


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  138 bits (507),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 81/192 (43%), Positives = 134/192 (70%), Gaps = 9/192 (4%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF----K  75
            P+  ++ TS+ KIV+VLG+L+NA+G+QQVPPNM + +VAL+++ F+M+PV +       K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  76   AAQNYSPGAENSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPD  135
             + NYS      +V    ++   P+R FL K+T E++ +FF  +A++   +D    LK D
Sbjct  85   NPINYSDRDFYQKVE---QGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKED  139

Query  136  DLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLL  195
             +++L PAFTL++L  AF++GFLLYL FI IDL+++N L+A+G+  V+P  ++IPFK+LL
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  196  FVALDGWSMLIH  207
            F+ ++GW  +++
Sbjct  200  FILVGGWQKIFE  211

150) xccb100_3079 in NC_010688


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  138 bits (507),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 81/192 (43%), Positives = 134/192 (70%), Gaps = 9/192 (4%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF----K  75
            P+  ++ TS+ KIV+VLG+L+NA+G+QQVPPNM + +VAL+++ F+M+PV +       K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  76   AAQNYSPGADNSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPD  135
             + NYS      +V    ++   P+R FL K+T E++ +FF  +A++   +D    LK D
Sbjct  85   NPINYSDRDFYQKVE---QGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKED  139

Query  136  DLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLL  195
             +++L PAFTL++L  AF++GFLLYL FI IDL+++N L+A+G+  V+P  ++IPFK+LL
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  196  FVALDGWSMLIH  207
            F+ ++GW  +++
Sbjct  200  FILVGGWQKIFE  211

151) C770_GR4pC1264 in NC_019848


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  138 bits (506),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 83/200 (42%), Positives = 141/200 (71%), Gaps = 2/200 (1%)

Query  10   IIIIVSTIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVALILTVYVTTP  69
            +I+I   ++++P+ VV  T+FLKI IVL +++NALGIQQ PPN+ + +VAL+LT+++ +P
Sbjct  14   LIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSP  73

Query  70   LVGEMYRTLSSEPVDVQSIDSMMRAADSLRVPLQTHLKRYTDENERQFFMQATERIWSEE  129
            ++  +   +  +P++    D   +  +++  P +  LK+ T E++  FF  A+ +  +++
Sbjct  74   VILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND  133

Query  130  ARAEVKTDSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMGMMMVSPTLI  189
            +   +K DS++IL+PAF  ++L  AF +GFLLYLPF+ IDLI+S +L+A+GMMMVSP  I
Sbjct  134  T--VLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTI  191

Query  190  SIPLKIFLFVAVNGWSRLMH  209
            SIP+KI+LF+ V GW ++ +
Sbjct  192  SIPFKILLFILVGGWQKIFE  211

152) N646_0740 in NC_022349


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  137 bits (503),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 94/187 (51%), Positives = 145/187 (78%), Gaps = 2/187 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P++ +++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++FIM+PV +   D + +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  81   HDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSll  140
            + I+  D    + + ++ L PYR FLKK+  E +  FF  AA+    +  V  L  DS++
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIF  142

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +LLPAFT+++L  AF +GFLLYLPFIAIDLI+SNILLA+GMMMVSP+TIS+PFK+LLF+L
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  201  lDGWTKL  207
            ++GW K+
Sbjct  203  VGGWQKI  209

153) VEA_003362 in NC_013456


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  137 bits (503),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 94/187 (51%), Positives = 145/187 (78%), Gaps = 2/187 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P++ +++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++FIM+PV +   D + +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  81   HDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSll  140
            + I+  D    + + ++ L PYR FLKK+  E +  FF  AA+    +  V  L  DS++
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIF  142

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +LLPAFT+++L  AF +GFLLYLPFIAIDLI+SNILLA+GMMMVSP+TIS+PFK+LLF+L
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  201  lDGWTKL  207
            ++GW K+
Sbjct  203  VGGWQKI  209

154) VPBB_1532 in NC_019955


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  137 bits (503),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 94/187 (51%), Positives = 145/187 (78%), Gaps = 2/187 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P++ +++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++FIM+PV +   D + +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  81   HDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSll  140
            + I+  D    + + ++ L PYR FLKK+  E +  FF  AA+    +  V  L  DS++
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIF  142

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +LLPAFT+++L  AF +GFLLYLPFIAIDLI+SNILLA+GMMMVSP+TIS+PFK+LLF+L
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  201  lDGWTKL  207
            ++GW K+
Sbjct  203  VGGWQKI  209

155) ssaR in NC_021848


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  137 bits (503),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 94/187 (51%), Positives = 145/187 (78%), Gaps = 2/187 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P++ +++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++FIM+PV +   D + +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  81   HDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSll  140
            + I+  D    + + ++ L PYR FLKK+  E +  FF  AA+    +  V  L  DS++
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIF  142

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +LLPAFT+++L  AF +GFLLYLPFIAIDLI+SNILLA+GMMMVSP+TIS+PFK+LLF+L
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  201  lDGWTKL  207
            ++GW K+
Sbjct  203  VGGWQKI  209

156) ssaR in NC_021847


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  137 bits (503),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 94/187 (51%), Positives = 145/187 (78%), Gaps = 2/187 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P++ +++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++FIM+PV +   D + +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  81   HDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSll  140
            + I+  D    + + ++ L PYR FLKK+  E +  FF  AA+    +  V  L  DS++
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIF  142

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +LLPAFT+++L  AF +GFLLYLPFIAIDLI+SNILLA+GMMMVSP+TIS+PFK+LLF+L
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  201  lDGWTKL  207
            ++GW K+
Sbjct  203  VGGWQKI  209

157) VP1672 in NC_004603


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  137 bits (503),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 94/187 (51%), Positives = 145/187 (78%), Gaps = 2/187 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P++ +++TSF+K+ +V+++L+NALG+QQ+PPNMA+ ++A++L++FIM+PV +   D + +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  81   HDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSll  140
            + I+  D    + + ++ L PYR FLKK+  E +  FF  AA+    +  V  L  DS++
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIF  142

Query  141  lllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfvl  200
            +LLPAFT+++L  AF +GFLLYLPFIAIDLI+SNILLA+GMMMVSP+TIS+PFK+LLF+L
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  201  lDGWTKL  207
            ++GW K+
Sbjct  203  VGGWQKI  209

158) sctR in NC_020127


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  136 bits (498),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 83/193 (44%), Positives = 141/193 (74%), Gaps = 13/193 (6%)

Query  20   PFVIMMVTSYVKIVVVTSLIRNALGVQQVPPAIVMNGLAIILSIFIMAPVYMKMEDLYLK  79
            P+ +++ TS++KIV+V ++++NALG+QQVPP + + ++A++L++FIM+PV +K++D   K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  80   TALPSSPAALEVIKALYDAT-----PPLREFLIRNADESTIRGLMVTAKRIWPKDQHETI  134
             ++  S       + +Y+       +P R FL +N+ E  I  +  +AK+   +D    +
Sbjct  85   NPINYSD------RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVL  136

Query  135  SRNNLLIIIPAFTITELTKSFQIGFLLYLPFVAIDLVVSNILLAMGMMMVSPMTISLPFK  194
              ++++I++PAFT+ +L  +F++GFLLYLPF+AIDL++SNILLA+GMMMVSP+TIS+PFK
Sbjct  137  KEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFK  196

Query  195  LLLFVTLDGWLKI  207
            +LLF+ ++GW KI
Sbjct  197  ILLFILVGGWQKI  209

159) SctR in NC_008011


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  136 bits (498),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 83/193 (44%), Positives = 141/193 (74%), Gaps = 13/193 (6%)

Query  20   PFVIMMVTSYVKIVVVTSLIRNALGVQQVPPAIVMNGLAIILSIFIMAPVYMKMEDLYLK  79
            P+ +++ TS++KIV+V ++++NALG+QQVPP + + ++A++L++FIM+PV +K++D   K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  80   TALPSSPAALEVIKALYDAT-----PPLREFLIRNADESTIRGLMVTAKRIWPKDQHETI  134
             ++  S       + +Y+       +P R FL +N+ E  I  +  +AK+   +D    +
Sbjct  85   NPINYSD------RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVL  136

Query  135  SRNNLLIIIPAFTITELTKSFQIGFLLYLPFVAIDLVVSNILLAMGMMMVSPMTISLPFK  194
              ++++I++PAFT+ +L  +F++GFLLYLPF+AIDL++SNILLA+GMMMVSP+TIS+PFK
Sbjct  137  KEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFK  196

Query  195  LLLFVTLDGWLKI  207
            +LLF+ ++GW KI
Sbjct  197  ILLFILVGGWQKI  209

160) SFHH103_04957 in NC_016815


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  135 bits (494),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 79/193 (41%), Positives = 135/193 (70%), Gaps = 2/193 (1%)

Query  18   IGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVALILTVYVTTPLVGEMYR  77
            ++++P+ VV  T+FLKI IVL +++NALGIQQ PPN+ + +VAL+LT+++ +P++  +  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  78   TLSSEQVDMQSMDSMMRAANQLRAPLQAHLTRYTDENERQFFLQATERIWSEEARASVKT  137
             +  + ++    D   +  + + +P +  L + T E++  FF  A+ +  ++++   +K 
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDT--VLKE  138

Query  138  DSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMGMMMVSPTLISIPLKIF  197
            DS++IL+PAF  ++L  AF +GFLLYLPF+ IDLI+S +L+A+GMMMVSP  ISIP+KI+
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  198  LFVAVNGWSRLMH  210
            LF+ V GW ++ +
Sbjct  199  LFILVGGWQKIFE  211

161) USDA257_c21640 in NC_018000


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  135 bits (495),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 139/200 (70%), Gaps = 2/200 (1%)

Query  11   IIIIVSTIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVALILTVYVTTP  70
            +I+I   ++++P+ VV  T+FLKI IVL +++NALGIQQ PPN+ + +VAL+LT+++ +P
Sbjct  14   LIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSP  73

Query  71   LVGEMYRTLSSEQVDVQSMDSMVRAADQLRAPLQAHLTRYTDENERQFFLQATERIWSEE  130
            ++  +   +  + ++    D   +  + + +P +  L + T E++  FF  A+ +  +++
Sbjct  74   VILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND  133

Query  131  ARASVKTDSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMGMMMVSPTLI  190
            +   +K DS++IL+PAF  ++L  AF +GFLLYLPF+ IDLI+S +L+A+GMMMVSP  I
Sbjct  134  T--VLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTI  191

Query  191  SIPLKIFLFVAVNGWSRLMH  210
            SIP+KI+LF+ V GW ++ +
Sbjct  192  SIPFKILLFILVGGWQKIFE  211

162) rhcR in NC_012586


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  134 bits (493),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 139/200 (70%), Gaps = 2/200 (1%)

Query  11   IIIIVSTIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVALILTVYVTTP  70
            +I+I   ++++P+ VV  T+FLKI IVL +++NALGIQQ PPN+ + +VAL+LT+++ +P
Sbjct  14   LIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSP  73

Query  71   LVGEMYRTLSSEQVDMQSMDSMVRAANQLRAPLQAHLTRYTDENERQFFLQATERIWSEE  130
            ++  +   +  + ++    D   +  + + +P +  L + T E++  FF  A+ +  +++
Sbjct  74   VILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND  133

Query  131  ARASVKTDSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMGMMMVSPTLI  190
            +   +K DS++IL+PAF  ++L  AF +GFLLYLPF+ IDLI+S +L+A+GMMMVSP  I
Sbjct  134  T--VLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTI  191

Query  191  SIPLKIFLFVAVNGWSRLMH  210
            SIP+KI+LF+ V GW ++ +
Sbjct  192  SIPFKILLFILVGGWQKIFE  211

163) fliP in NC_015425


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  134 bits (492),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 81/194 (42%), Positives = 136/194 (71%), Gaps = 14/194 (7%)

Query  66   PSFLVMMTSFTRIIIVLGFMRNALGTQQAPPNQILIGIALFLTIFIMAPTYKTINKEAIK  125
            P F+V+ TSF +I+IVLG+++NALG QQ PPN  + ++AL LT+FIM+P    IN +  K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  126  PFLENKITG--QQAMDNASKPMREFMLKQTRDKDLELFLDVSKTDKTKITKDNV----PM  179
              ++    +  Q+  +    P R F+ K+T +KD+ +F     + K K+ +D V    ++
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFF---ESAAKKKLGNDTVLKEDSI  141

Query  180  YVVIPSFIISELKTAFKIGFLLYIPFLIIDIVVASVLMSMGMFMLPPVMISLPFKILLFV  239
            ++++P+F +++L +AFK+GFLLY+PF+ ID++++++L+++GM M++PV IS+PFKILLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  240  MVDGW-----YLLV  248
            +V+GW     YLLV
Sbjct  202  LVGGWQKIFEYLLV  215

164) H650_14845 in NC_021500


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  134 bits (492),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 78/188 (42%), Positives = 139/188 (74%), Gaps = 6/188 (3%)

Query  25   MIISTSFLKISVVLLIVRNALGIQQVPGNMVIYSISLAATLFIMGPVFNDMTQRVRQISP  84
            ++I+TSFLKI +VL I++NALGIQQVP NM I S++L  T+FIM+PV+  + + + + +P
Sbjct  28   VVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK-NP  86

Query  85   DKIDVAAIYAHY-PTVIAPLQNFLQRNIDADTHVRLTEAAKKLWKDQANNPITRDNPALI  143
             +     +Y      +++P + FL++N   + ++ + E+A K  K  +N+ + ++++ +I
Sbjct  87   INYSDRDFYQKVEQGILSPYRVFLKKN-TLEKDISFFESAAK--KKLGNDTVLKEDSIFI  143

Query  144  L-SAFVLSELQSGFKIGFLIYIPFLVIDLVVSTVLMALGMQMVAPMFIAIPLKLLLFVLI  202
            L +AF L++L+++FK+GFL+Y+PF+ IDL++S +L+ALGM MV+P+ I+IP+K+LLF+L+
Sbjct  144  LLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILV  203

Query  203  EGWSRLLE  210
             GW +++E
Sbjct  204  GGWQKIFE  211

165) fliP in NC_012559


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  134 bits (490),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 76/185 (42%), Positives = 137/185 (75%), Gaps = 8/185 (4%)

Query  59   IPALLLMMTAFTRIVIVLSLLRQAIGLMQSPPNQVIVGLSLFLTLFVMAPVF---DQAYR  115
            +P ++++ T+F +IVIVL++L++A+G+ Q PPN  I +++L LT+F+M+PV+   ++   
Sbjct  24   LPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIE  83

Query  116  EAWLPYSDSQMNFMQAAEKGV-QPFKGFMLKQTREKDLAFFVEIARE--APPATPADVSL  172
               + YSD   +F Q  E+G+  P++ F+ K+T EKD++FF   A+   +  +   + S+
Sbjct  84   KNPINYSDR--DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSI  141

Query  173  KTLIPAFVVSELKTAFQIGFMVFIPFLIIDLVVASVLMAMGMMMVSPVIISLPFKLMLFV  232
              L+PAF +++L +AF++GF++++PF+ IDL+++++L+A+GMMMVSPV IS+PFK++LF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  233  LVDGW  237
            LV+GW
Sbjct  202  LVGGW  206

166) Pmen_0046 in NC_009439


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 92/211 (44%), Positives = 157/211 (75%), Gaps = 8/211 (3%)

Query  5    GMNPIMLALFLGALSLIPFLLIVCTAFLKIAMTLMITRNAIGVQQVPPNMAIYGIALAAT  64
            G +PI+L +++  LS++P+++++ T+FLKI + L I +NA+G+QQVPPNMAI ++AL  T
Sbjct  8    GGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLT  67

Query  65   MFVMAPVAYEIQNRLSDNPLDLSSTDSLQASAGNVVEPLQDFMVNNT-DPDIATHLLENT  123
            MF+M+PV   I++ +  NP++ S  D  Q     ++ P + F+ +NT + DI+  ++E++
Sbjct  68   MFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS--FFESA  125

Query  124  QRMWPREMSEKA--SKSDLLLAIPAFVLSELQAAFQIGFLIYIPFIVIDLIISNLLLALG  181
             +   + +++ +      +++ +PAF L++L+AAF++GFL+Y+PFI IDLIISN+LLALG
Sbjct  126  AK---KKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALG  182

Query  182  MQMVSPMTISlplklllfvlVDGWTRLLNSL  212
            M MVSP+TIS+P+K+LLF+LV+GW ++++ L
Sbjct  183  MMMVSPVTISIPFKILLFILVGGWQKIFEYL  213

167) Thet_1223 in NC_014538


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 78/185 (43%), Positives = 143/185 (78%), Gaps = 9/185 (4%)

Query  33   PSILIMMTSFTRIVIVLSFLRNALGLQQMPPNQVLIGLALFLTLFIMAP----IGQDINN  88
            P ++++ TSF +IVIVL++L+NALG+QQ+PPN  + ++AL LT+FIM+P    I ++I++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  89   NAIKPYTEGKITQEEAYQNTIKPLKNFMLKQTRQNDLNLFVSLAKININN---VEELPMR  145
            N+I+ Y++  + Q    Q  + P + F+ K+T ++D+++F S AK ++ N   + E ++ 
Sbjct  85   NPIN-YSDRDFYQKVE-QGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIF  142

Query  146  VVIPAFIISELKTAFQIGFILYIPFLIIDIVVASVLMSMGMFMLPPVLISLPFKVLLFIL  205
            +++PAF +++L +AF++GF+LY+PF+ ID++++++L+++GM M++PV IS+PFK+LLFIL
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  206  VDGWN  210
            V+GW+
Sbjct  203  VGGWQ  207

168) fliP in NC_010320


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 78/185 (43%), Positives = 143/185 (78%), Gaps = 9/185 (4%)

Query  33   PSILIMMTSFTRIVIVLSFLRNALGLQQMPPNQVLIGLALFLTLFIMAP----IGQDINN  88
            P ++++ TSF +IVIVL++L+NALG+QQ+PPN  + ++AL LT+FIM+P    I ++I++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  89   NAIKPYTEGKITQEEAYQNTIKPLKNFMLKQTRQNDLNLFVSLAKININN---VEELPMR  145
            N+I+ Y++  + Q    Q  + P + F+ K+T ++D+++F S AK ++ N   + E ++ 
Sbjct  85   NPIN-YSDRDFYQKVE-QGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIF  142

Query  146  VVIPAFIISELKTAFQIGFILYIPFLIIDIVVASVLMSMGMFMLPPVLISLPFKVLLFIL  205
            +++PAF +++L +AF++GF+LY+PF+ ID++++++L+++GM M++PV IS+PFK+LLFIL
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  206  VDGWN  210
            V+GW+
Sbjct  203  VGGWQ  207

169) spaP in NC_010694


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  130 bits (476),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 83/204 (41%), Positives = 156/204 (77%), Gaps = 6/204 (2%)

Query  3    NNEISLIALLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGVALVLTA  62
             + I LI ++ ++++LP+++  GT F+K+ IVL +++NALGIQQVP+N+++ +VALVLT 
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  63   FVMMPVCQRISGYIEAKSLDFNERGALSQLMNEGIESYREYLVRYSDHNLILFFNNVEHR  122
            F+M PV  +I++ IE +++++++R+   ++ +  + +YR +L + + ++ I FF++   +
Sbjct  69   FIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKK  128

Query  123  NEVTLEDRVPDEELSQLSLLTLMPAYALSEIQSAFRIAFYLYIPFvvidlvvssillalG  182
            +   L +   D  L + S++ L+PA++L+++++AF+++F LY+PF+ IDL++S+ILLALG
Sbjct  129  K---LGN---DTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALG  182

Query  183  MMMMSPVTISIPIKLILFVAMDGW  206
            MMM+SPVTISIP+K++LF+ ++GW
Sbjct  183  MMMVSPVTISIPFKILLFILVGGW  206

170) hrcR in NC_014323


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  130 bits (476),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 76/189 (41%), Positives = 131/189 (70%), Gaps = 7/189 (3%)

Query  28   TTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIALALSVFIMAPTVQEVGKRAMAVDVSHP  87
             TSFLKI +VL +L+NA+G+QQVPP +AI ++AL L++FIM+P +  +      ++  +P
Sbjct  31   GTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDN---IE-KNP  86

Query  88   AASRTVPILERAQDA-FDPLRKFMLKMSHAEQREMFLASAKKLWPKEAAKDAQPTDALIL  146
                   + ++ +++ + P R F+ K +   +   F ++AKK   +++    ++   +IL
Sbjct  87   INYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSI--FIL  144

Query  147  IPAFVVSELQTGYEIGFLIYIPFVVIDLLISNLLMALGMQQVSPQTITIPLKLLLFTLVG  206
            +PAF +++L++++ +GFL+Y+PF+ IDL+ISN+L+ALGM  VSP TI+IP+K+LLF LVG
Sbjct  145  LPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVG  204

Query  207  GWAKLLNAL  215
            GW K+++ L
Sbjct  205  GWQKIFEYL  213

171) HrcR in NC_007005


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  130 bits (475),  Expect = 6e-32, Method: Compositional matrix adjust.
 Identities = 88/211 (42%), Positives = 160/211 (76%), Gaps = 8/211 (3%)

Query  5    GINPIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAAT  64
            G +PI+L +++  LS++P+++++ T+FLKI + L I +NA+G+QQVPPNMA+ ++AL  T
Sbjct  8    GGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLT  67

Query  65   MFVMAPVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNT-DPDVVAHLLENT  123
            MF+M+PV   I++ ++ +P++ S+ D  Q   + ++ P + F+ +NT + D+   ++E++
Sbjct  68   MFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDI--SFFESA  125

Query  124  QRMWPKEMADQA--SKDDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALG  181
             +   K +++++    D +++ +PAF L++L+A+F +GFL+Y+PFI IDLI+SN+LLALG
Sbjct  126  AK---KKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALG  182

Query  182  MQMVSPMTlslplklllfvlVSGWSRLLDSL  212
            M MVSP+T+S+P+K+LLF+LV+GW ++++ L
Sbjct  183  MMMVSPVTISIPFKILLFILVGGWQKIFEYL  213

172) hrcR in NC_005773


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  130 bits (475),  Expect = 6e-32, Method: Compositional matrix adjust.
 Identities = 86/211 (41%), Positives = 160/211 (76%), Gaps = 8/211 (3%)

Query  3    GVNPIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAAT  62
            G +PI+L +++  LS++P+++++ T+FLKI + L I +NA+G+QQVPPNMA+ ++AL  T
Sbjct  8    GGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLT  67

Query  63   MFVMAPVAHEIQQRVHEHPLELGSADKLQSSLKTVIEPLQRFMTRNT-DPDVVAHLLENT  121
            MF+M+PV   I++ ++ +P++ +  D  Q   + ++ P + F+ +NT + D+   ++E++
Sbjct  68   MFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDI--SFFESA  125

Query  122  QRMWPKEMADQA--NKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALG  179
             +   K +++++  + + +++ +PAF L++L+A+F +GFL+Y+PFI IDLI+SN+LLALG
Sbjct  126  AK---KKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALG  182

Query  180  MQMVSPMTlslplklllfvlVSGWSRLLDSL  210
            M MVSP+T+S+P+K+LLF+LV+GW ++++ L
Sbjct  183  MMMVSPVTISIPFKILLFILVGGWQKIFEYL  213

173) Marme_3223 in NC_015276


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  130 bits (475),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 80/193 (42%), Positives = 138/193 (72%), Gaps = 3/193 (1%)

Query  56   LTLLPSALIMMTSFTRIIIVLSILRQALGLQQAPSNQIILGMALFLTLFIMGPTLDQINE  115
            L++LP  +++ TSF +I+IVL+IL++ALG+QQ P+N  I ++AL LT+FIM+P + +IN+
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  116  S-ALQPYLSDNMTSLQAVKAASI-PIREFMLGQTREDDIALFVKLAGKE-GQIPSLEDLP  172
            +   +P    +    Q V  + + P R F+  +T E DI++F   A K  G+   L + +
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  173  FTILMPAFVTSELKTAFQIGFMLFIPFLIVDMVVASVLMAMGMMMLSPIIISLPFKIMLF  232
            + IL+PAF  ++L +AF++GF+L++PF+ +D++++++L+A+GMMM+SP+ IS+PFKI+LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  233  VMVDGWSMIMGTL  245
            ++V+GW  I   L
Sbjct  201  ILVGGWQKIFEYL  213

174) MXAN_2447 in NC_008095


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  129 bits (471),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 82/195 (43%), Positives = 137/195 (71%), Gaps = 9/195 (4%)

Query  25   MGLVPFALMMATSFVKISVVLSIVRSALGTQQIPPTQVITGLAIILTVYIMAPVGQQMYR  84
            ++++P+ ++++TSF+KI +VL+I+++ALG QQ+PP   IT++A++LT++IM+PV  ++  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKI--  78

Query  85   AAGLDIWAKGPGVFSSETVGSMLGAANKSKEPLREWLIKKVTTKDRALFFNLAKKMRKGE  144
               ++   K P  +S       +  +  S  P R  L K+   KD + FF+ A K + G+
Sbjct  79   NDNIE---KNPINYSDRDFYQKVEQGILS--PYRVFLKKNTLEKDIS-FFESAAKKKLGN  132

Query  145  DRDAVESNDFMVIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTI  204
            D    E + F +++PAF +++L  AF++GFLL++PFI ID++++NILLALGM M+SP TI
Sbjct  133  DTVLKEDSIF-ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTI  191

Query  205  SMPFKLLLFVLVDGW  219
            S+PFK+LLF+LV+GW
Sbjct  192  SIPFKILLFILVGGW  206

175) fliP in NC_016002


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  129 bits (471),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 78/188 (42%), Positives = 135/188 (72%), Gaps = 8/188 (4%)

Query  53   LSFIPALLLMMTSFTRIIIVLSLLRQAMGTMQAPPNQVLVGLALFLTLFVMGP---TFDQ  109
            LS +P ++++ TSF +I+IVL++L++A+G  Q PPN  + ++AL LT+F+M+P    +++
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  110  VYSKAWVPFSEDKIGFAQMLEEGS-KPMREFMLKQTREKDLAFFIEVSQSPAPPTPA--E  166
               K  + +S+   +F Q +E+G   P R F+ K+T EKD++FF   ++          E
Sbjct  81   NIEKNPINYSDR--DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  167  VSMKTLIPAFVISELKTAFQIGFMVFIPFLIIDLVVASILMAMGMMMVSPVIISLPFKLM  226
             S+  L+PAF +++L +AF++GF++++PF+ IDL++++IL+A+GMMMVSPV IS+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  227  LFVLVDGW  234
            LF+LV+GW
Sbjct  199  LFILVGGW  206

176) MYSTI_02838 in NC_020126


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 82/195 (43%), Positives = 138/195 (71%), Gaps = 9/195 (4%)

Query  68   MGLVPFALMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGTAMYR  127
            ++++P+ +++ TSF+KI +VL+I+++ALG QQ+PP   IT++A++LT++IM+PV   +  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKI--  78

Query  128  AAEIDVWAKGPGVFSSSTVGSLLEGASKSKEPLRAWLMKKVTVKDRSLFYNLAKKMRTGE  187
              +I+   K P  +S       +E +  S  P R  L K+   KD S F++ A K + G+
Sbjct  79   NDNIE---KNPINYSDRDFYQKVEQGILS--PYRVFLKKNTLEKDIS-FFESAAKKKLGN  132

Query  188  DRDSVQSQDFMVIVPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTI  247
            D   ++ + + +++PAF +++L  AF++GFLL++PFI ID++++NILLALGM M+SP TI
Sbjct  133  D-TVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTI  191

Query  248  SMPFKLLLFVLVDGW  262
            S+PFK+LLF+LV+GW
Sbjct  192  SIPFKILLFILVGGW  206

177) fliP in NC_020209


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  128 bits (468),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 76/187 (41%), Positives = 136/187 (73%), Gaps = 6/187 (3%)

Query  52   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDKVNQ  111
            LS +P FV++ TSF +I+IV++IL++ALG+QQ P+N  +T++AL LTMFIM+PV+ K+N+
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  112  QALQP---YLAETITPQVAIDRAQGPIKDFMLSQTRSSDLELFVRLSKRT--DIATPDQA  166
            +  +    Y    +  +V  +   +P + F+  +T   D+ +F   +K+   + +   + 
Sbjct  81   NIEKNPINYSDRDFYQKVE-QGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED  139

Query  167  PLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIML  226
            ++ IL+PAF  ++L +AF++GF++++PF+ IDL+++++L+A+GMMM+SP+ IS+PFKI+L
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  227  FVLVDGW  233
            F+LV+GW
Sbjct  200  FILVGGW  206

178) Daud_1753 in NC_010424


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  128 bits (467),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 78/186 (42%), Positives = 138/186 (75%), Gaps = 5/186 (2%)

Query  68   ISLLPAFLVMVTSFTRIVVVLAFLRAGLGIYQAPPGSVLIGLALFLTVFIMAPVYAQVNE  127
            +S+LP F+V+ TSF +IV+VL++L+ +LGI Q PP   + ++AL LT+FIM+PV  ++N+
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  128  Q-AIEPFLRGEIDQVEAQERAA-GPLREFMLRHTREKDLDLFVRMAEI---ENPVPNELP  182
            +   +P+  ++ D  +  E++  +P R F+ ++T EKD+ +F   A     ++ V +E +
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  183  LTVVIPAFIISELKTAFTMGFMLYLPFLIIDMVVASILLSMGMFMLPPVMISLPFKLLLF  242
            + +++PAF +++L +AF +GF+LYLPF+ ID+++++ILL++GM M++PV IS+PFK+LLF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  243  VLVDGW  248
            +LV+GW
Sbjct  201  ILVGGW  206

179) LILAB_19925 in NC_015711


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  128 bits (467),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 81/195 (42%), Positives = 136/195 (70%), Gaps = 9/195 (4%)

Query  68   MGLVPFALMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGTQMYR  127
            ++++P+ +++ TSF+KI +VL+I+++ALG QQ+PP   IT++A++LT++IM+PV  ++  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKI--  78

Query  128  AAGLDIWAKGPGVFSSETVGSMLGAANKSKEPLREWLMKKVTTKDRALFFNLAKKLRQGE  187
               ++   K P  +S       +  +  S  P R  L K+   KD + FF+ A K + G+
Sbjct  79   NDNIE---KNPINYSDRDFYQKVEQGILS--PYRVFLKKNTLEKDIS-FFESAAKKKLGN  132

Query  188  DRDAVESDDFMVIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTI  247
            D   +  D + +++PAF +++L  AF++GFLL++PFI ID++++NILLALGM M+SP TI
Sbjct  133  D-TVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTI  191

Query  248  SMPFKLLLFVLVDGW  262
            S+PFK+LLF+LV+GW
Sbjct  192  SIPFKILLFILVGGW  206

180) JCM7686_1775 in NC_022041


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  127 bits (466),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 81/194 (42%), Positives = 133/194 (69%), Gaps = 7/194 (3%)

Query  14   LMVVPFIVVSLTAFVKIAVVLFLVRSALGVQQTPPNLVLYGVTIVLTGYVMSPVLAASFA  73
            L V+P++VV  T+F+KI +VL ++++ALG+QQ PPN+ + +V++VLT ++MSPV+     
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVIL----  76

Query  74   EMTNGGQMDALP-PPSEWPGLIQRG-LGPVREFLMRFTTPVDRAFFLSAAEEMHKTSGVV  131
             + +  + +++  +  +    +++G L+P R FL + T   D +FF  +A      ++ V
Sbjct  77   KINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFF-ESAAKKKLGNDTV  135

Query  132  PSEQDLFILAPAFVTAELTRAFEIGVMLYLPFIVVDLVITNILTAMGMMMVSPTVISLPF  191
              E+ +FIL PAF  ++L  AF +G +LYLPFI +DL+I+NIL A+GMMMVSP  IS+PF
Sbjct  136  LKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  192  KLLLFVAVDGWARL  205
            K+LLF+ V+GW ++
Sbjct  196  KILLFILVGGWQKI  209

181) fliP in NC_012660


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  127 bits (466),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 75/187 (41%), Positives = 137/187 (74%), Gaps = 6/187 (3%)

Query  52   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPVFDKVNQ  111
            LS +P FV++ TSF +I+IV++IL++ALG+QQ P+N  +T++AL LT+FIM+PV+ K+N+
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  112  QALQP---YLAEKMTAQDAIDKAQGPIKDFMLSQTRSSDLELFMRLSKRT--DIATPDQA  166
            +  +    Y +++   Q   +   +P + F+  +T   D+ +F   +K+   + +   + 
Sbjct  81   NIEKNPINY-SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED  139

Query  167  PLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIML  226
            ++ IL+PAF  ++L +AF++GF++++PF+ IDL+++++L+A+GMMM+SP+ IS+PFKI+L
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  227  FVLVDGW  233
            F+LV+GW
Sbjct  200  FILVGGW  206

182) spaP in NC_005085


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  127 bits (465),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 82/203 (41%), Positives = 147/203 (73%), Gaps = 5/203 (2%)

Query  2    SNDISLIALLAFSTLLPFLIASGTCFVKFSIVFVMVRNALGLQQVPSNMTLNGIALMLSM  61
            ++ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQVP+NM++ ++AL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMLPVAQQAYGYYQEERVSFTSVEAVNNFVENGLDGYRGYLQKYSDPELTRFFEKAQSQ  121
            F+M PV  +  +  + + ++++  +  ++  +  L  YR +L+K +      FFE A  +
Sbjct  69   FIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKK  128

Query  122  RSERDGGEAAAPDDKPSIFALLPAYALSEIKSAFKIGFYLYLPFvvvdlvissvllalGM  181
            +    G ++   +D  SIF LLPA++L+++ +AFK+GF LYLPF+ +DL+IS++LLALGM
Sbjct  129  KL---GNDTVLKED--SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGM  183

Query  182  MMMSPVTISVPIKLVLFVALDGW  204
            MM+SPVTIS+P+K++LF+ ++GW
Sbjct  184  MMVSPVTISIPFKILLFILVGGW  206

183) fliP in NC_004344


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  127 bits (464),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 136/195 (70%), Gaps = 20/195 (10%)

Query  68   LTFIPALILLMSSFTRIIIVLSILRNALGTPTAPPNQILIGLSLCLTIFIMSPVLEKI--  125
            L+ +P ++++ +SF +I+IVL+IL+NALG    PPN  + +++L LT+FIMSPV+ KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  126  --------YYDSYLPFYQNKINLQKAIIYAEQPIKEFMISQTREKDLAFYSKISKTNEIN  177
                    Y D    FYQ+   ++++I+    P + F+  +T EKD++F+   +K +  N
Sbjct  81   NIEKNPINYSDR--DFYQK---VEQGIL---SPYRVFLKKNTLEKDISFFESAAKKKLGN  132

Query  178  SP--KEVPIKILIPAFVTSELKTAFQIGFTLFIPFLIIDMVVASILMALGMMMLPPTTVS  235
                KE +I IL+PAF  ++L +AF++GF L++PF+ ID+++++IL+ALGMMM++P T+S
Sbjct  133  DTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTIS  192

Query  236  LPFKLMLFVMADGWQ  250
            +PFK++LF++ +GWQ
Sbjct  193  IPFKILLFILVGGWQ  207

184) Deba_2315 in NC_014365


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 77/192 (41%), Positives = 132/192 (69%), Gaps = 17/192 (8%)

Query  74   MTTSFVRIAVSFSLLRNALGAPQVPPTQIIVGLSLFLTFFIMAPVFDQVHDKALKPYLDG  133
            + TSF++I + +++L+NALG  QVPP   I +++L LT FIM+PV+ +++D+  K     
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKN--PI  87

Query  134  AISQSAFFEEAAK----PMREFMLKQTRKKDLGLF----MKIAGEDRPRNEQDVTMSALV  185
              S+  F++   +    P R F+ K+T  KD+++F     K  G+D   +E+ + +  L+
Sbjct  88   NYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFI--LL  145

Query  186  PAFVISELRTAFEIGFLLYVPFLVIDMVVASVLLSMGMMMLPPVMISLPFKLMLFVLVDG  245
            PAF +++L +AF +GFLLY+PF+ ID++++++LL++GMMM++PV IS+PFK++LF+LV+G
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  246  W-----YLLVGS  252
            W     YLLV +
Sbjct  206  WQKIFEYLLVVN  217

185) PSEBR_a1491 in NC_015379


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  126 bits (463),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 77/188 (41%), Positives = 136/188 (73%), Gaps = 8/188 (4%)

Query  54   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQ  113
            LS +P FV++ TSF +I+IV++IL++ALG+QQ P+N  +T++AL LTMFIM+PV+ ++N+
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  114  DALQPYLAEKITAQDAVAKAE----VPIKDFMLAQTRSSDLELFMRLSKRT--DIPSADQ  167
            +  +   + + + +D   K E     P + F+  +T   D+ +F   +K+   +     +
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  168  APLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPLIISLPFKIM  227
             ++ IL+PAF  ++L +AF++GF++++PF+ IDL++++IL+A+GMMM+SP+ IS+PFKI+
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  228  LFVLVDGW  235
            LF+LV+GW
Sbjct  199  LFILVGGW  206

186) fliP in NC_016830


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  126 bits (463),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 77/188 (41%), Positives = 136/188 (73%), Gaps = 8/188 (4%)

Query  54   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQ  113
            LS +P FV++ TSF +I+IV++IL++ALG+QQ P+N  +T++AL LTMFIM+PV+ ++N+
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  114  DALQPYLAEKITAQDAVAKAE----VPIKDFMLAQTRSSDLELFMRLSKRT--DIPSADQ  167
            +  +   + + + +D   K E     P + F+  +T   D+ +F   +K+   +     +
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  168  APLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPLIISLPFKIM  227
             ++ IL+PAF  ++L +AF++GF++++PF+ IDL++++IL+A+GMMM+SP+ IS+PFKI+
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  228  LFVLVDGW  235
            LF+LV+GW
Sbjct  199  LFILVGGW  206

187) MDS_1862 in NC_015410


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  126 bits (463),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 78/191 (41%), Positives = 141/191 (74%), Gaps = 14/191 (7%)

Query  66   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTMFIMAPVF----D  121
            LS +P FV++ TSF +I+IV++IL++ALG+QQ P+N  + ++AL LTMFIM+PV+    D
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  122  RINTDALQPYLNEEI---IAQEALTRAEGPIRDFMLAQTRESDLALFVRLSKRT--DLAG  176
             I+ ++++ Y + ++   + Q  L+    P R F+  +T E D+++F   +K+   + + 
Sbjct  81   NIEKNPIN-YSDRDFYQKVEQGILS----PYRVFLKKNTLEKDISFFESAAKKKLGNDTV  135

Query  177  VEDVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSPLIISLPF  236
            + + ++ IL+PAF  ++L +AF++GF++++PF+ ID+++++IL+A+GMMM+SP+ IS+PF
Sbjct  136  LKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  237  KIMLFVLVDGW  247
            KI+LF+LV+GW
Sbjct  196  KILLFILVGGW  206

188) fliP in NC_009706


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  126 bits (463),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 77/185 (42%), Positives = 131/185 (71%), Gaps = 13/185 (7%)

Query  77   SFVRIVVVFGFLRTAMGTQQSPPNQVLVGLALFLTVFIMLPVYGKINSEAIQP---YLQN  133
            SF++IV+V+G+L+ A+G QQ PPN  + ++AL LT+FIM PV  KIN +  +    Y + 
Sbjct  33   SFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSDR  92

Query  134  GITQEQAVERGA-KPLREFMLKQTRQKDLKLFVDEAK--LNYEVTKDNAPLYVVIPAYII  190
            ++ Q   VE+G   P R F+ K+T +KD+ +F   AK  L  +    + ++++++PA+ +
Sbjct  93   DFYQK--VEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFTL  150

Query  191  SELKTAFQIGFLLYIPFMIIDLVVGSVLMSMGMFMLPPVMISLPFKLLLFVMTDGW----  246
            ++L +AF++GFLLY+PF+ IDL+++++L+++GM M++PV IS+PFK+LLF++ +GW    
Sbjct  151  GQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKIF  210

Query  247  -YLLV  250
             YLLV
Sbjct  211  EYLLV  215

189) fliP in NC_011837


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  126 bits (463),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 77/185 (42%), Positives = 131/185 (71%), Gaps = 13/185 (7%)

Query  77   SFVRIVVVFGFLRTAMGTQQSPPNQVLVGLALFLTVFIMLPVYGKINSEAIQP---YLQN  133
            SF++IV+V+G+L+ A+G QQ PPN  + ++AL LT+FIM PV  KIN +  +    Y + 
Sbjct  33   SFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSDR  92

Query  134  GITQEQAVERGA-KPLREFMLKQTRQKDLKLFVDEAK--LNYEVTKDNAPLYVVIPAYII  190
            ++ Q   VE+G   P R F+ K+T +KD+ +F   AK  L  +    + ++++++PA+ +
Sbjct  93   DFYQK--VEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFTL  150

Query  191  SELKTAFQIGFLLYIPFMIIDLVVGSVLMSMGMFMLPPVMISLPFKLLLFVMTDGW----  246
            ++L +AF++GFLLY+PF+ IDL+++++L+++GM M++PV IS+PFK+LLF++ +GW    
Sbjct  151  GQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKIF  210

Query  247  -YLLV  250
             YLLV
Sbjct  211  EYLLV  215

190) fliP in NC_007005


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  126 bits (462),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 136/188 (73%), Gaps = 8/188 (4%)

Query  55   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPVFDRVNQ  114
            LS +P FV++ TSF +I+IV++IL++ALG+QQ P+N  +T++AL LTMFIM+PV+ ++N+
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  115  DALQPYLAEKLSAQDAVAKAQ----VPIKDFMLAQTRTSDLELFMRLSKRT--DIPTPDA  168
            +  +   + + S +D   K +     P + F+  +T   D+ +F   +K+   +      
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  169  APLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIM  228
             ++ IL+PAF +++L +AF++GF++++PF+ IDL+++++L+A+GMMM+SP+ IS+PFKI+
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  229  LFVLVDGW  236
            LF+LV+GW
Sbjct  199  LFILVGGW  206

191) fliP in NC_005773


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  126 bits (461),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 76/189 (41%), Positives = 136/189 (72%), Gaps = 8/189 (4%)

Query  55   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQ  114
            LS +P FV++ TSF +I+IV++IL++ALG+QQ P+N  +T++AL LTMFIM+PV+ ++N+
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  115  DALQPYLAEKLSAQDAVAKAQ----VPIKDFMLAQTRTSDLELFMRLSKRT--DIPTPDA  168
            +  +   + + S +D   K +     P + F+  +T   D+ +F   +K+   +      
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  169  APLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIM  228
             ++ IL+PAF +++L +AF++GF++++PF+ IDL+++++L+A+GMMM+SP+ IS+PFKI+
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  229  LFVLVDGWA  237
            LF+LV+GW 
Sbjct  199  LFILVGGWQ  207

192) fliP in NC_017030


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  126 bits (462),  Expect = 9e-31, Method: Compositional matrix adjust.
 Identities = 82/198 (42%), Positives = 136/198 (69%), Gaps = 15/198 (7%)

Query  68   MSLVPFALMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAIILTVYIMAPVG---QE  124
            +S++P+ +++ TSF+KI +VL+I+++ALG QQ+PP   IT++A++LT++IM+PV    ++
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  125  MYRAGGIDIWSRGTSVFSSETVGTMLGAADKSKEPLREFLMKKVTNKDRTLFYSLAKKMR  184
                  I+   R+   F       +L+       P R FL K+  +KD ++F S AKK  
Sbjct  81   NIEKNPINYSDRD---FYQKVEQGILS-------PYRVFLKKNTLEKDISFFESAAKK--  128

Query  185  KEEDRKDIGPNDFMVIVPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSP  244
            K  +   +  + + +++PAF +++L  AF++GFLL++PFI ID++++NILLALGM M+SP
Sbjct  129  KLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSP  188

Query  245  TTISMPFKLLLFVLVDGW  262
             TIS+PFK+LLF+LV+GW
Sbjct  189  VTISIPFKILLFILVGGW  206

193) fliP in NC_009439


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  125 bits (459),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 77/191 (41%), Positives = 141/191 (74%), Gaps = 14/191 (7%)

Query  66   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTLFIMAPIF----D  121
            LS +P FV++ TSF +I+IV++IL++ALG+QQ P+N  + ++AL LT+FIM+P++    D
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  122  RINTDALQPYLNEEI---VAQEALTRAEGPIRDFMLAQTRESDLALFVRLSKRT--DLAG  176
             I+ ++++ Y + ++   V Q  L+    P R F+  +T E D+++F   +K+   + + 
Sbjct  81   NIEKNPIN-YSDRDFYQKVEQGILS----PYRVFLKKNTLEKDISFFESAAKKKLGNDTV  135

Query  177  VEDVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSPLIISLPF  236
            + + ++ IL+PAF  ++L +AF++GF++++PF+ ID+++++IL+A+GMMM+SP+ IS+PF
Sbjct  136  LKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  237  KIMLFVLVDGW  247
            KI+LF+LV+GW
Sbjct  196  KILLFILVGGW  206

194) Ser39006_2919 in NC_022268


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  125 bits (458),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 86/211 (41%), Positives = 158/211 (75%), Gaps = 6/211 (2%)

Query  1    MISGQFDPVMLALFLGALSLIPMMMIVCTCFLKIAMVLIITRNAIGVQQVPPNMALYGIA  60
            +I+GQ  P++L +++  LS++P+ +++ T FLKI +VL I +NA+G+QQVPPNMA+ ++A
Sbjct  6    VIGGQ--PILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVA  63

Query  61   LASTLFIMAPVFNDIRQQFQDTPLDLNSIETLETTLGSGITPLQKFMSRNS-DPDILVHL  119
            L  T+FIM+PV+  I ++++  P++ +  +  +    + ++P + F+ +N+ + DI   +
Sbjct  64   LVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDI--SF  121

Query  120  HENSIRMWPASMSEKVNTQNILLVIPAFVLSELQAGFKIGFLVYIPFIVIDLIVSNVLLA  179
             E++ +   ++    ++ ++I++++PAF L++L+A+FK+GFL+Y+PFI IDLI+SN+LLA
Sbjct  122  FESAAKKKLGN-DTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLA  180

Query  180  LGMQMVAPTTlslplklllfilVNGWTRLLD  210
            LGM MV+P T+S+P+K+LLFILV GW ++++
Sbjct  181  LGMMMVSPVTISIPFKILLFILVGGWQKIFE  211

195) MU9_1792 in NC_020418


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  125 bits (456),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 75/177 (43%), Positives = 129/177 (73%), Gaps = 4/177 (2%)

Query  62   MTTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVFDKVYEDAYR-PFSE  120
            + TSF +I+IVLG+L+NALG    PPN  + ++AL LT F+MSPV+ K+ ++  + P++ 
Sbjct  30   IGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY  89

Query  121  DKISLETALDRGT-APLRTFMLGQTRENDLALFARIAK--VGEIQEAKDVPMRILIPAFI  177
                +   +++G  +P R F+  +T E+D+++F   AK  +G+    K+ ++ IL+PAF 
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFT  149

Query  178  TSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGW  234
             ++L +AF++GF L++PF+ IDL+++++L+ALGMMMV+P T+S+PFK++LF+LV+GW
Sbjct  150  LGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

196) H650_09085 in NC_021500


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  125 bits (458),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 78/187 (42%), Positives = 132/187 (71%), Gaps = 4/187 (2%)

Query  59   LTFLPAILLMMTGFTRIVIVLGLLRNALGTASTPPNQVLLGLALFLTFFVMSPVLNRVYD  118
            L+ LP ++++ T+F +IVIVLG+L+NALG    PPN  + ++AL LT F+MSPV+ ++ D
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  119  E-AWVPLSQDKISMEVALQKGS-QPLRAFMLKQTREGDLALFSRIAKAEQFNTA--DDVP  174
            +    P++         +++G   P R F+ K+T E D+++F   AK    N +   + +
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  175  MSILVPAFVTSELKTGFQIGFTMFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLF  234
            + IL+PAF  ++L ++F++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  235  VLVDGWQ  241
            +LV+GWQ
Sbjct  201  ILVGGWQ  207

197) REMIM1_PE00285 in NC_021909


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  125 bits (456),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 73/178 (42%), Positives = 117/178 (66%), Gaps = 2/178 (1%)

Query  31   FIKVSVVLFLVRNALGTQTIPPNIVLYAAALILTLFISAPVIEQTYIRIADPKLRYQTLD  90
            F+K+ +VL +++NALG Q +PPN+ + + AL+LT+FI +PVI +    I    + Y   D
Sbjct  34   FLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSDRD  93

Query  91   DWVTAAEEGREPLRDYLKKFTSEEQRRFFLSSTKQVWPEEMRARTTPDDFAILVPSFLIS  150
                  +    P R +LKK T E +  FF S++K+   ++   +   D + IL+P+F ++
Sbjct  94   FYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE--DSIFILLPAFTLG  151

Query  151  ELKRAFEIGFLLYLPFICIDLIVTTILMAMGMSMVSPTVIAVPFKLFLFVTIDGWSQL  208
            +L  AF +GFLLYLPFI IDLI++ IL+A+GM MVSP  I++PFK++LF+ ++GW ++
Sbjct  152  QLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKI  209

198) Adeg_2033 in NC_013385


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  125 bits (456),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 75/184 (41%), Positives = 134/184 (73%), Gaps = 8/184 (4%)

Query  34   PAILILMTSFTRIVIVLSLLRSALGTHQAPPNQVLVGLALFLTVFIMAPVYERINQEAIR  93
            P ++++ TSF +IVIVL++L++ALG +Q PPN  + ++AL LT+FIM+PV  +IN++  +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  94   P---YLANQITRQEAQVRGLRPLKEFMLRQVREKDLALFVNLAHL---PQPVNKEELPLR  147
                Y   ++ ++  Q   L P + F+ ++  EKD+++F + A      + V KE+ ++ 
Sbjct  85   NPINYSDRDFYQKVEQGI-LSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-SIF  142

Query  148  VIIPAFLISELKTAFAMGFLLYLPFLVIDMVVASVLMSMGMFMLPPVMISLPFKLLLFVL  207
            +++PAF +++L +AF +GFLLYLPF+ ID++++++L+++GM M++PV IS+PFK+LLF+L
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  208  VDGW  211
            V+GW
Sbjct  203  VGGW  206

199) fliP in NC_007348


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  125 bits (456),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 80/189 (43%), Positives = 131/189 (70%), Gaps = 8/189 (4%)

Query  71   LSFLPAAVLMMTGFTRIVIVLGLLRNALGTASSPPNQVLVGLSLFLTFFVMSPVLDRVYN  130
            LS LP  V++ T+F +IVIVLG+L+NALG    PPN  + +++L LT F+MSPV+ ++ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  131  DAYK-PLS-ENRISLETAMAKAAEPLKGFMLKQTREKDLAMFAQMAKAPEMQGPEEV---  185
            +  K P++  +R   +        P + F+ K+T EKD++ F   AK     G + V   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK--KKLGNDTVLKE  138

Query  186  -PMSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPPATISLPFKLM  244
             ++ IL+PAF  ++L +AF++GF +++PF+ IDL+++++L+A+GMMMV+P TIS+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  245  LFVLVDGWQ  253
            LF+LV+GWQ
Sbjct  199  LFILVGGWQ  207

200) spaP in NC_016830


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (454),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 79/182 (44%), Positives = 131/182 (72%), Gaps = 7/182 (3%)

Query  23   GTCYIKFSIVFVIVRNALGLQQVPSnmalnaialmlaiFVMTPVMKQGHDYYKREAVTFT  82
            GT ++K+ IV+ I++NALG+QQVP+NMA+ ++AL+L++F+M+PV+ + +D   ++++ ++
Sbjct  31   GTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYS  90

Query  83   DIASVVDFAENGLGSYKDYLRKYTDPELAQFFERAQAFQDETYAGLPADEEV-EASLFSL  141
            D        +  L++Y+ +L+K T      FFE A          L  D  + E S+F L
Sbjct  91   DRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK------KKLGNDTVLKEDSIFIL  144

Query  142  LPAYALSEIKSAFKIGFYLYLPFVIVDLVISSILLALGMMMMSPVIISVPIKLVLFVALD  201
            LPA++L+++ +AFK+GF LYLPF+ +DL+IS+ILLALGMMM+SPV IS+P+K++LF+ ++
Sbjct  145  LPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVG  204

Query  202  GW  203
            GW
Sbjct  205  GW  206

201) spaP in NC_019670


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (454),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 79/182 (44%), Positives = 135/182 (75%), Gaps = 7/182 (3%)

Query  23   GTCYIKFSIVFVIVRNALGLQQVPSnmalnaialmlaiFVMTPVMKQGYGYYKEEQVAFT  82
            GT ++K+ IV+ I++NALG+QQVP+NMA+ ++AL+L++F+M+PV+ +  +    + + ++
Sbjct  31   GTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYS  90

Query  83   DIESVVNFAENGLGGYKDYLRKYT-DPELALFFERAQAVQSESDIVLPADEELTPSLFSL  141
            D +   +  +  L+ Y+ +L+K T + +++ FFE A   +  +D VL  D     S+F L
Sbjct  91   DRDFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKED-----SIFIL  144

Query  142  LPAYALSEIKSAFKIGFYLYLPFVIVDLVISSILLALGMMMMSPVIISVPIKLVLFVALD  201
            LPA++L+++ +AFK+GF LYLPF+ +DL+IS+ILLALGMMM+SPV IS+P+K++LF+ ++
Sbjct  145  LPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVG  204

Query  202  GW  203
            GW
Sbjct  205  GW  206

202) Clopa_2925 in NC_021182


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (454),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 77/183 (43%), Positives = 125/183 (69%), Gaps = 6/183 (3%)

Query  68   PSIIIMTTSFTRIIVVLGFLKNALGTQSAPPNQVIIGLALFLTFFIMMPTYTTINNNAIQ  127
            P ++++ TSF +I++VLG+LKNALG Q  PPN  I ++AL LT FIM P    IN+N  +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  128  P---YVNNKINQQQAITVGEKPLKEFMLKQTRKKDLQLFMDAAKMDPKTDT--DHTPIHV  182
                Y +  + Q+    +   P + F+ K+T  KD+ +F  AAK     DT   + +I +
Sbjct  85   NPINYSDRDFYQKVEQGI-LSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFI  143

Query  183  VIPAFIISELKTAFIIGFLLFIPFMIIDFVVASILMSMGMFMVPPAMVSLPFKILLFVMV  242
            ++PAF +++L +AF +GFLL++PF+ ID+++++IL+++GM MV+P  +S+PFKILLF++V
Sbjct  144  LLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILV  203

Query  243  DGW  245
            +GW
Sbjct  204  GGW  206

203) fliP in NC_003869


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (454),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 73/176 (42%), Positives = 137/176 (78%), Gaps = 5/176 (2%)

Query  40   TSFTRIVIVLAFLRNALGLQQMPPNQVLIGLALFLTFYIMAPVGYDINNNAIKPYVE-GQ  98
            TSF +IVIVL++L+NALG+QQ+PPN  + ++AL LT +IM+PV   IN+N  K  ++ ++
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  99   INQYEAYQRAI-KPLKNFMLRQTRQNDLALFVNLAKIKVDK---VEDLPMRVVIPAFIIS  154
             + Y+  +++I  P + F+ ++T ++D+++F + AK K+++   + + ++ +++PAF ++
Sbjct  92   RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFTLG  151

Query  155  ELKTAFEIGFIIYIPFLVIDIIVASVLMSMGMFMLPPVLISLPFKVLLFILVDGWN  210
            +L +AF +GF++Y+PF+ ID+I++++L+++GM M++PV IS+PFK+LLFILV+GW+
Sbjct  152  QLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

204) ETAC_10205 in NC_020796


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (453),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 80/187 (43%), Positives = 133/187 (72%), Gaps = 4/187 (2%)

Query  52   LSFLPAALLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVLDKIYQ  111
            LS LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ KI +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  112  D-AYQPFSEQKISMETALDRGA-KPLRAFMLRQTRETDLALFSRLAKQPEMQGP--EDVP  167
            +   +P++         +++G   P R F+ ++T E D+++F   AK+   ++    + +
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  168  MRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLF  227
            + ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  228  VLVDGWQ  234
            +LV+GWQ
Sbjct  201  ILVGGWQ  207

205) fliP in NC_013508


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (453),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 80/187 (43%), Positives = 133/187 (72%), Gaps = 4/187 (2%)

Query  52   LSFLPAALLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVLDKIYQ  111
            LS LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ KI +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  112  D-AYQPFSEQKISMETALDRGA-KPLRAFMLRQTRETDLALFSRLAKQPEMQGP--EDVP  167
            +   +P++         +++G   P R F+ ++T E D+++F   AK+   ++    + +
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  168  MRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLF  227
            + ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  228  VLVDGWQ  234
            +LV+GWQ
Sbjct  201  ILVGGWQ  207

206) fliP in NC_017309


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (453),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 80/187 (43%), Positives = 133/187 (72%), Gaps = 4/187 (2%)

Query  52   LSFLPAALLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVLDKIYQ  111
            LS LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ KI +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  112  D-AYQPFSEQKISMETALDRGA-KPLRAFMLRQTRETDLALFSRLAKQPEMQGP--EDVP  167
            +   +P++         +++G   P R F+ ++T E D+++F   AK+   ++    + +
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  168  MRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLF  227
            + ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  228  VLVDGWQ  234
            +LV+GWQ
Sbjct  201  ILVGGWQ  207

207) fliP in NC_013971


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (453),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 80/197 (41%), Positives = 139/197 (71%), Gaps = 4/197 (2%)

Query  43   PVQTLVLLSSLTFLPAILLMMTGFTRIIIVLGLMRNALGTPTSPPNQVLVGLALFLTFYV  102
            P+  +V++  L+ LP ++++ T+F +I+IVLG+++NALG    PPN  + ++AL LT ++
Sbjct  11   PILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFI  70

Query  103  MSPVFNQIYEQ-AWQPLQEDKITMEVALEQGV-KPLRAFMLDQTRENDLAMFAQMAKA--  158
            MSPV+ +I ++   +P++         +EQG+  P R F+  +T E+D++ F   AK   
Sbjct  71   MSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKL  130

Query  159  GEFKGPEEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPAT  218
            G+     E ++ IL+PAF  ++L +AF++GF +++PF+ IDL++++IL+ALGMMMV+P T
Sbjct  131  GNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVT  190

Query  219  IALPFKLMLFVLVDGWQ  235
            I++PFK++LF+LV+GWQ
Sbjct  191  ISIPFKILLFILVGGWQ  207

208) fliP3 in NC_013961


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (453),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 80/197 (41%), Positives = 139/197 (71%), Gaps = 4/197 (2%)

Query  43   PVQTLVLLSSLTFLPAILLMMTGFTRIIIVLGLMRNALGTPTSPPNQVLVGLALFLTFYV  102
            P+  +V++  L+ LP ++++ T+F +I+IVLG+++NALG    PPN  + ++AL LT ++
Sbjct  11   PILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFI  70

Query  103  MSPVFNQIYEQ-AWQPLQEDKITMEVALEQGV-KPLRAFMLDQTRENDLAMFAQMAKA--  158
            MSPV+ +I ++   +P++         +EQG+  P R F+  +T E+D++ F   AK   
Sbjct  71   MSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKL  130

Query  159  GEFKGPEEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPAT  218
            G+     E ++ IL+PAF  ++L +AF++GF +++PF+ IDL++++IL+ALGMMMV+P T
Sbjct  131  GNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVT  190

Query  219  IALPFKLMLFVLVDGWQ  235
            I++PFK++LF+LV+GWQ
Sbjct  191  ISIPFKILLFILVGGWQ  207

209) Mar181_0819 in NC_015559


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (452),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 73/181 (41%), Positives = 129/181 (72%), Gaps = 3/181 (1%)

Query  62   SFTRIVVVLAILRQAIGLQQTPSNQIMIGMALFLTLFIMTPTLDRVNQ-VALQPYLNEEM  120
            SF +IV+VL+IL++A+G+QQ P+N  + ++AL LT+FIM+P + ++N+ +  +P    + 
Sbjct  33   SFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSDR  92

Query  121  TSVQAVEAAS-GPIRDFMLAQTREDDINLFVKLAGRE-GSIDSLDSLPFTILMPAFVTSE  178
               Q VE +  +P R F+  +T E DI++F   A +  G+   L   ++ IL+PAF  ++
Sbjct  93   DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFTLGQ  152

Query  179  LKTAFQIGFMIFIPFLIVDMVVASVLMAMGMMMLSPVIISLPFKIMLFVMVDGWAMIMGT  238
            L +AF++GF++++PF+ +D++++++L+A+GMMM+SPV IS+PFKI+LF++V+GW  I   
Sbjct  153  LEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKIFEY  212

Query  239  L  239
            L
Sbjct  213  L  213

210) NT01EI_2431 in NC_012779


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (452),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 80/187 (43%), Positives = 133/187 (72%), Gaps = 4/187 (2%)

Query  52   LSFLPAALLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVLDKIYQ  111
            LS LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ KI +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  112  E-AYQPFSEQKISMETALDRGA-KPLRAFMLRQTRETDLALFSRLAKQPEMQGP--EDVP  167
            +   +P++         +++G   P R F+ ++T E D+++F   AK+   ++    + +
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  168  MRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLF  227
            + ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  228  VLVDGWQ  234
            +LV+GWQ
Sbjct  201  ILVGGWQ  207

211) fliP in NC_020912


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (452),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 8/188 (4%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P FV++ TSF +I+IV++IL++ALG+Q  P+N  + ++AL LTMF+M+PV+ KIN 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  120  QALQPYLNEQIPAQEALQKAE----VPLKAFMLAQTRTSDLELFVRLSKRT--DIGSPEA  173
            +  +     + + ++  QK E     P + F+  +T   D+ +F   +K+   +      
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             ++ IL+PAF  ++L +AF++GF++++PF+ IDL++S++L+A+GMMM+SP+ IS+PFKI+
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  234  LFVLVDGW  241
            LF+LV+GW
Sbjct  199  LFILVGGW  206

212) fliP in NC_018080


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (452),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 8/188 (4%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P FV++ TSF +I+IV++IL++ALG+Q  P+N  + ++AL LTMF+M+PV+ KIN 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  120  QALQPYLNEQIPAQEALQKAE----VPLKAFMLAQTRTSDLELFVRLSKRT--DIGSPEA  173
            +  +     + + ++  QK E     P + F+  +T   D+ +F   +K+   +      
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             ++ IL+PAF  ++L +AF++GF++++PF+ IDL++S++L+A+GMMM+SP+ IS+PFKI+
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  234  LFVLVDGW  241
            LF+LV+GW
Sbjct  199  LFILVGGW  206

213) fliP in NC_011770


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (452),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 8/188 (4%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P FV++ TSF +I+IV++IL++ALG+Q  P+N  + ++AL LTMF+M+PV+ KIN 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  120  QALQPYLNEQIPAQEALQKAE----VPLKAFMLAQTRTSDLELFVRLSKRT--DIGSPEA  173
            +  +     + + ++  QK E     P + F+  +T   D+ +F   +K+   +      
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             ++ IL+PAF  ++L +AF++GF++++PF+ IDL++S++L+A+GMMM+SP+ IS+PFKI+
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  234  LFVLVDGW  241
            LF+LV+GW
Sbjct  199  LFILVGGW  206

214) fliP in NC_017548


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (452),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 8/188 (4%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P FV++ TSF +I+IV++IL++ALG+Q  P+N  + ++AL LTMF+M+PV+ KIN 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  120  QALQPYLNEQIPAQEALQKAE----VPLKAFMLAQTRTSDLELFVRLSKRT--DIGSPEA  173
            +  +     + + ++  QK E     P + F+  +T   D+ +F   +K+   +      
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             ++ IL+PAF  ++L +AF++GF++++PF+ IDL++S++L+A+GMMM+SP+ IS+PFKI+
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  234  LFVLVDGW  241
            LF+LV+GW
Sbjct  199  LFILVGGW  206

215) fliP in NC_017549


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (452),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 8/188 (4%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P FV++ TSF +I+IV++IL++ALG+Q  P+N  + ++AL LTMF+M+PV+ KIN 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  120  QALQPYLNEQIPAQEALQKAE----VPLKAFMLAQTRTSDLELFVRLSKRT--DIGSPEA  173
            +  +     + + ++  QK E     P + F+  +T   D+ +F   +K+   +      
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             ++ IL+PAF  ++L +AF++GF++++PF+ IDL++S++L+A+GMMM+SP+ IS+PFKI+
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  234  LFVLVDGW  241
            LF+LV+GW
Sbjct  199  LFILVGGW  206

216) fliP in NC_002516


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (452),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 8/188 (4%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P FV++ TSF +I+IV++IL++ALG+Q  P+N  + ++AL LTMF+M+PV+ KIN 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  120  QALQPYLNEQIPAQEALQKAE----VPLKAFMLAQTRTSDLELFVRLSKRT--DIGSPEA  173
            +  +     + + ++  QK E     P + F+  +T   D+ +F   +K+   +      
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             ++ IL+PAF  ++L +AF++GF++++PF+ IDL++S++L+A+GMMM+SP+ IS+PFKI+
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  234  LFVLVDGW  241
            LF+LV+GW
Sbjct  199  LFILVGGW  206

217) M062_07750 in NC_021577


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (452),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 8/188 (4%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P FV++ TSF +I+IV++IL++ALG+Q  P+N  + ++AL LTMF+M+PV+ KIN 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  120  QALQPYLNEQIPAQEALQKAE----VPLKAFMLAQTRTSDLELFVRLSKRT--DIGSPEA  173
            +  +     + + ++  QK E     P + F+  +T   D+ +F   +K+   +      
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             ++ IL+PAF  ++L +AF++GF++++PF+ IDL++S++L+A+GMMM+SP+ IS+PFKI+
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  234  LFVLVDGW  241
            LF+LV+GW
Sbjct  199  LFILVGGW  206

218) fliP in NC_008463


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  124 bits (452),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 8/188 (4%)

Query  60   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINS  119
            LS +P FV++ TSF +I+IV++IL++ALG+Q  P+N  + ++AL LTMF+M+PV+ KIN 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  120  QALQPYLNEQIPAQEALQKAE----VPLKAFMLAQTRTSDLELFVRLSKRT--DIGSPEA  173
            +  +     + + ++  QK E     P + F+  +T   D+ +F   +K+   +      
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  174  TPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM  233
             ++ IL+PAF  ++L +AF++GF++++PF+ IDL++S++L+A+GMMM+SP+ IS+PFKI+
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  234  LFVLVDGW  241
            LF+LV+GW
Sbjct  199  LFILVGGW  206

219) fliP in NC_017445


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  123 bits (451),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 80/197 (41%), Positives = 138/197 (71%), Gaps = 4/197 (2%)

Query  43   PVQTLVLLSSLTFLPAVLLMMTGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYV  102
            P+  +V++  L+ LP  +++ T+F +I+IVLG+++NALG    PPN  + ++AL LT ++
Sbjct  11   PILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFI  70

Query  103  MSPVFNQIYEQ-AWQPLQEDKITMEVALEQGV-KPLRAFMLDQTRENDLAMFAQIAKA--  158
            MSPV+ +I ++   +P++         +EQG+  P R F+  +T E+D++ F   AK   
Sbjct  71   MSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKL  130

Query  159  GEFKGPEEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPAT  218
            G+     E ++ IL+PAF  ++L +AF++GF +++PF+ IDL++++IL+ALGMMMV+P T
Sbjct  131  GNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVT  190

Query  219  IALPFKLMLFVLVDGWQ  235
            I++PFK++LF+LV+GWQ
Sbjct  191  ISIPFKILLFILVGGWQ  207

220) ENC_28610 in NC_021046


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  123 bits (451),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 72/176 (41%), Positives = 123/176 (70%), Gaps = 4/176 (2%)

Query  64   TGFTRIVIVLGLMRNALGTPTAPPNQVLVGLALFLTFFVMSPVLNQIYEQ-AWQPLQANK  122
            T+F +IVIVLG+++NALG    PPN  + ++AL LT F+MSPV+ +I ++   +P++ + 
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  123  ITMETALKEGV-KPLRAFMLEQTREADLAMFARIAKTPTLTGP--EDVPLSILVPSFVTS  179
                  + +G+  P R F+  +T E D++ F   AK     +    + ++ IL+P+F  +
Sbjct  92   RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFTLG  151

Query  180  ELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQ  235
            +L +AF++GF +++PF+ IDL++++IL+ALGMMMV+P TI++PFK++LF+LV+GWQ
Sbjct  152  QLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

221) fliP in NC_009792


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  123 bits (450),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AWQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANSGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

222) Entcl_1801 in NC_014618


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  123 bits (450),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 80/189 (43%), Positives = 135/189 (72%), Gaps = 8/189 (4%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRSALGTASAPPNQVLLGLALFLTFFIMSPVIDKIYT  110
            L+ LP ++++ TSF +I+IV+G+L++ALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFNDNKITLEQAIDKGA-QPLREFMLRQTREADLALFARLSHSEPIQGPEAV---  165
            +   +P+N +   + Q +++G   P R F+ ++T E D+++F   +      G ++V   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK--LGNDTVLKE  138

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  225  LFVLVDGWQ  233
            LF+LV+GWQ
Sbjct  199  LFILVGGWQ  207

223) fliP in NC_017390


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  123 bits (449),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 80/197 (41%), Positives = 138/197 (71%), Gaps = 4/197 (2%)

Query  43   PVQTLVLLSSLTFLPAVLLMMTGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYV  102
            P+  +V++  L+ LP  +++ T+F +I+IVLG+++NALG    PPN  + ++AL LT ++
Sbjct  11   PILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFI  70

Query  103  MSPVFNQIYQQ-AWQPLQEDKITMEVALEQGV-KPLRAFMLDQTRENDLAMFAQIAKA--  158
            MSPV+ +I ++   +P++         +EQG+  P R F+  +T E+D++ F   AK   
Sbjct  71   MSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKL  130

Query  159  GEFKGPEEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPAT  218
            G+     E ++ IL+PAF  ++L +AF++GF +++PF+ IDL++++IL+ALGMMMV+P T
Sbjct  131  GNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVT  190

Query  219  IALPFKLMLFVLVDGWQ  235
            I++PFK++LF+LV+GWQ
Sbjct  191  ISIPFKILLFILVGGWQ  207

224) fliP in NC_012214


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  123 bits (449),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 80/197 (41%), Positives = 138/197 (71%), Gaps = 4/197 (2%)

Query  43   PVQTLVLLSSLTFLPAVLLMMTGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYV  102
            P+  +V++  L+ LP  +++ T+F +I+IVLG+++NALG    PPN  + ++AL LT ++
Sbjct  11   PILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFI  70

Query  103  MSPVFNQIYQQ-AWQPLQEDKITMEVALEQGV-KPLRAFMLDQTRENDLAMFAQIAKA--  158
            MSPV+ +I ++   +P++         +EQG+  P R F+  +T E+D++ F   AK   
Sbjct  71   MSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKL  130

Query  159  GEFKGPEEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPAT  218
            G+     E ++ IL+PAF  ++L +AF++GF +++PF+ IDL++++IL+ALGMMMV+P T
Sbjct  131  GNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVT  190

Query  219  IALPFKLMLFVLVDGWQ  235
            I++PFK++LF+LV+GWQ
Sbjct  191  ISIPFKILLFILVGGWQ  207

225) M892_26345 in NC_022270


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  123 bits (449),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 135/189 (72%), Gaps = 10/189 (5%)

Query  62   LSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWTDIHD  121
            LS LP F++++TSF +I++VL+IL++ALG+QQ PPN  + ++AL LT++IM PV   I+D
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  122  NAFK-PYDNGEITLMQAFSVAE---KPVRNFMLAQTHQSSLEQMLRIANEPIDQNV---E  174
            N  K P + ++  + Q   V +    P R F+  +T +  +      A+  ++++    E
Sbjct  81   NIEKNPINYSDRDFYQ--KVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  175  DISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKL  234
            D  F ++LPAF +++L +AF++GF+L++PF+ IDL+++++L+A+GMMM+SP+ IS+PFK+
Sbjct  139  DSIF-ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  235  VVFVLVDGW  243
            ++F+LV+GW
Sbjct  198  LLFILVGGW  206

226) fliP in NC_009784


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  123 bits (449),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 135/189 (72%), Gaps = 10/189 (5%)

Query  62   LSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWTDIHD  121
            LS LP F++++TSF +I++VL+IL++ALG+QQ PPN  + ++AL LT++IM PV   I+D
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  122  NAFK-PYDNGEITLMQAFSVAE---KPVRNFMLAQTHQSSLEQMLRIANEPIDQNV---E  174
            N  K P + ++  + Q   V +    P R F+  +T +  +      A+  ++++    E
Sbjct  81   NIEKNPINYSDRDFYQ--KVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  175  DISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKL  234
            D  F ++LPAF +++L +AF++GF+L++PF+ IDL+++++L+A+GMMM+SP+ IS+PFK+
Sbjct  139  DSIF-ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  235  VVFVLVDGW  243
            ++F+LV+GW
Sbjct  198  LLFILVGGW  206

227) Bamb_4215 in NC_008391


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  123 bits (448),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 77/180 (43%), Positives = 133/180 (74%), Gaps = 5/180 (2%)

Query  28   TSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQSRHFDASG  87
            TS+ K+V+VLG+L++ALGIQQVPPN+ + ++AL+L++FIM+PV + I D ++   ++ S+
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  88   QLSTSDIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDLLVLVP  147
            +     +    ++ L+P + FL  +T ++D  FF  +A     ++    +K+D +++L+P
Sbjct  92   RDFYQKV---EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIFILLP  146

Query  148  SFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFVALDGW  207
            +FTL++L  AF++GF++Y+ FI +DL+++NILLALGM M+SP TIS+PFK+LLF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

228) BamMC406_4737 in NC_010552


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  123 bits (448),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 77/180 (43%), Positives = 133/180 (74%), Gaps = 5/180 (2%)

Query  28   TSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQSRHFDASG  87
            TS+ K+V+VLG+L++ALGIQQVPPN+ + ++AL+L++FIM+PV + I D ++   ++ S+
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  88   QLSTSDIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDLLVLVP  147
            +     +    ++ L+P + FL  +T ++D  FF  +A     ++    +K+D +++L+P
Sbjct  92   RDFYQKV---EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIFILLP  146

Query  148  SFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFVALDGW  207
            +FTL++L  AF++GF++Y+ FI +DL+++NILLALGM M+SP TIS+PFK+LLF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

229) fliP in NC_007974


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  123 bits (449),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 78/188 (42%), Positives = 130/188 (70%), Gaps = 6/188 (3%)

Query  70   LSFLPAAMLMMTGFTRIIIVLGLLRNALGTASSPPNQVLVGLSLFLTFFVMSPVFDKVYT  129
            LS LP  +++ T+F +I+IVLG+L+NALG    PPN  + +++L LT F+MSPV+ K+  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  130  D-AYQPLS-ENKISLETAAQRAAVPLRAFMLRQTREKDLAMFAQMAKT---PELQGPEDV  184
            +   +P++  ++   +   Q    P R F+ ++T EKD++ F   AK     +    ED 
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  185  PFTVLVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPPATISLPFKLML  244
             F +L+PAF  ++L +AF++GF +++PF+ IDL+++++L+A+GMMMV+P TIS+PFK++L
Sbjct  141  IF-ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  245  FVLVDGWQ  252
            F+LV+GWQ
Sbjct  200  FILVGGWQ  207

230) hrcR in NC_004547


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  123 bits (448),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 80/193 (42%), Positives = 140/193 (73%), Gaps = 2/193 (1%)

Query  18   LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVFQDISK  77
            LS++P+ +++ T FLKI IVL I +NA+G+QQVPPNMA+ ++AL  TMF+M+PV+  I+ 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  78   RVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVNT  137
             ++ +P++ +D    Q      L P + F+ +N     ++ ++  + +         ++ 
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKE  138

Query  138  QNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTlslplkll  197
            +++++++PAF L++L+A+FK+GFL+Y+PFI IDLI+SN+LLALGM MV+P+T+S+P+K+L
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  198  lfvlVNGWTRLLD  210
            LF+LV GW ++++
Sbjct  199  LFILVGGWQKIFE  211

231) Bcen_3526 in NC_008061


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 77/180 (43%), Positives = 133/180 (74%), Gaps = 5/180 (2%)

Query  28   TSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQARHFDASG  87
            TS+ K+V+VLG+L++ALGIQQVPPN+ + ++AL+L++FIM+PV + I D ++   ++ S+
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  88   QLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDLLVLVP  147
            +     +    ++ L+P + FL  +T ++D  FF  +A     ++    +K+D +++L+P
Sbjct  92   RDFYQKV---EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIFILLP  146

Query  148  SFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFVALDGW  207
            +FTL++L  AF++GF++Y+ FI +DL+++NILLALGM M+SP TIS+PFK+LLF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

232) Bcen2424_4840 in NC_008543


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 77/180 (43%), Positives = 133/180 (74%), Gaps = 5/180 (2%)

Query  28   TSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQARHFDASG  87
            TS+ K+V+VLG+L++ALGIQQVPPN+ + ++AL+L++FIM+PV + I D ++   ++ S+
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  88   QLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDLLVLVP  147
            +     +    ++ L+P + FL  +T ++D  FF  +A     ++    +K+D +++L+P
Sbjct  92   RDFYQKV---EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIFILLP  146

Query  148  SFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFVALDGW  207
            +FTL++L  AF++GF++Y+ FI +DL+++NILLALGM M+SP TIS+PFK+LLF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

233) bcscR in NC_011001


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 77/180 (43%), Positives = 133/180 (74%), Gaps = 5/180 (2%)

Query  28   TSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQARHFDASG  87
            TS+ K+V+VLG+L++ALGIQQVPPN+ + ++AL+L++FIM+PV + I D ++   ++ S+
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  88   QLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDLLVLVP  147
            +     +    ++ L+P + FL  +T ++D  FF  +A     ++    +K+D +++L+P
Sbjct  92   RDFYQKV---EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIFILLP  146

Query  148  SFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFVALDGW  207
            +FTL++L  AF++GF++Y+ FI +DL+++NILLALGM M+SP TIS+PFK+LLF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

234) Bcenmc03_5444 in NC_010515


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 77/180 (43%), Positives = 133/180 (74%), Gaps = 5/180 (2%)

Query  28   TSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQARHFDASG  87
            TS+ K+V+VLG+L++ALGIQQVPPN+ + ++AL+L++FIM+PV + I D ++   ++ S+
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  88   QLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDLLVLVP  147
            +     +    ++ L+P + FL  +T ++D  FF  +A     ++    +K+D +++L+P
Sbjct  92   RDFYQKV---EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIFILLP  146

Query  148  SFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFVALDGW  207
            +FTL++L  AF++GF++Y+ FI +DL+++NILLALGM M+SP TIS+PFK+LLF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

235) MYA_4948 in NC_017921


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (445),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 76/180 (43%), Positives = 133/180 (74%), Gaps = 5/180 (2%)

Query  28   TSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQARHFDAAG  87
            TS+ K+V+VLG+L++ALGIQQVPPN+ + ++AL+L++FIM+PV + I D ++   ++ ++
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  88   QLSTADIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDLLVLVP  147
            +     +    ++ L+P + FL  +T ++D  FF  +A     ++    +K+D +++L+P
Sbjct  92   RDFYQKV---EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIFILLP  146

Query  148  SFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFVALDGW  207
            +FTL++L  AF++GF++Y+ FI +DL+++NILLALGM M+SP TIS+PFK+LLF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

236) Bmul_3754 in NC_010086


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 77/180 (43%), Positives = 133/180 (74%), Gaps = 5/180 (2%)

Query  28   TSYTKLVVVLGLLRSALGVQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQARHFDASG  87
            TS+ K+V+VLG+L++ALG+QQVPPN+ + ++AL+L++FIM+PV + I D ++   ++ S+
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  88   QLSTADVGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDLLVLVP  147
            +     V    ++ L+P + FL  +T ++D  FF  +A     ++    +K+D +++L+P
Sbjct  92   RDFYQKV---EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIFILLP  146

Query  148  SFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFVALDGW  207
            +FTL++L  AF++GF++Y+ FI +DL+++NILLALGM M+SP TIS+PFK+LLF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

237) yscR in NC_010805


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 77/180 (43%), Positives = 133/180 (74%), Gaps = 5/180 (2%)

Query  28   TSYTKLVVVLGLLRSALGVQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQARHFDASG  87
            TS+ K+V+VLG+L++ALG+QQVPPN+ + ++AL+L++FIM+PV + I D ++   ++ S+
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  88   QLSTADVGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDLLVLVP  147
            +     V    ++ L+P + FL  +T ++D  FF  +A     ++    +K+D +++L+P
Sbjct  92   RDFYQKV---EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIFILLP  146

Query  148  SFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFVALDGW  207
            +FTL++L  AF++GF++Y+ FI +DL+++NILLALGM M+SP TIS+PFK+LLF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

238) Bcep1808_5328 in NC_009255


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (445),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 76/180 (43%), Positives = 133/180 (74%), Gaps = 5/180 (2%)

Query  28   TSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQARHFDAAG  87
            TS+ K+V+VLG+L++ALGIQQVPPN+ + ++AL+L++FIM+PV + I D ++   ++ ++
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  88   QLSTADIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDLLVLVP  147
            +     +    ++ L+P + FL  +T ++D  FF  +A     ++    +K+D +++L+P
Sbjct  92   RDFYQKV---EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV--LKEDSIFILLP  146

Query  148  SFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLLFVALDGW  207
            +FTL++L  AF++GF++Y+ FI +DL+++NILLALGM M+SP TIS+PFK+LLF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

239) fliP in NC_015856


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 76/180 (43%), Positives = 129/180 (72%), Gaps = 12/180 (6%)

Query  70   TSFTRIIIVLGLLRTAIGAQSSPPNQILVGLALFLTFFVMSPVFDKAYSDAYKP---FSD  126
            TSF +I+IVLG+L+ A+G Q  PPN  + ++AL LT F+MSPV+ K   +  K    +SD
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  127  NKISAEQALERGI-QPFKQFMLKQTREGDLALFARLAQAPQMQGPEEV----PLRILVPA  181
              +   Q +E+GI  P++ F+ K+T E D+++F   + A +  G + V    ++ IL+PA
Sbjct  92   RDFY--QKVEQGILSPYRVFLKKNTLEKDISFFE--SAAKKKLGNDTVLKEDSIFILLPA  147

Query  182  FVISELKTAFQIGFTIFIPFLIVDLVVASVLMSMGMMMVPPATISLPFKLMLFVLVDGWQ  241
            F +++L +AF++GF +++PF+ +DL+++++L+++GMMMV+P TIS+PFK++LF+LV+GWQ
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

240) fliP in NC_014121


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYT  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEDKISMQEALEKGA-QPLREFMLRQTREADLALFA-----RLSNTGELQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKI  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFKI
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

241) fliP in NC_018079


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYT  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEDKISMQEALEKGA-QPLREFMLRQTREADLALFA-----RLSNTGELQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKI  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFKI
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

242) fliP in NC_016514


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (445),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYT  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEDKISMQEALDKGA-QPLREFMLRQTREADLALFA-----RLSNTGELQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKI  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFKI
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

243) fliP in NC_015761


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALEKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

244) A464_2127 in NC_021870


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALEKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

245) fliP in NC_010067


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

246) fliP in NC_021820


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

247) fliP in NC_011149


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

248) fliP in NC_021844


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

249) SBOV20391 in NC_022241


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

250) fliP in NC_006905


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

251) fliP in NC_021818


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

252) fliP in NC_011205


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

253) fliP in NC_011294


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

254) fliP in NC_011274


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

255) fliP in NC_022221


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

256) fliP in NC_016831


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

257) fliP in NC_020307


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

258) fliP in NC_011080


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

259) SN31241_30780 in NC_021902


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

260) fliP in NC_010102


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

261) fliP in NC_012125


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

262) fliP in NC_021984


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

263) fliP in NC_011094


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

264) STY2187 in NC_003198


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

265) fliP in NC_016856


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

266) fliP in NC_017046


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

267) STMMW_19591 in NC_016854


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

268) fliP in NC_003197


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

269) fliP in NC_016810


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

270) fliP in NC_016857


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

271) fliP in NC_016860


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

272) fliP in NC_021151


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

273) fliP in NC_016863


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

274) fliP in NC_021814


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

275) STBHUCCB_9660 in NC_016832


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

276) fliP in NC_021176


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

277) fliP in NC_004631


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

278) COB47_1938 in NC_014392


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 78/187 (42%), Positives = 135/187 (73%), Gaps = 12/187 (6%)

Query  64   PSILIMMTSFTRILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQ  123
            P ++++ TSF +I+IVLG+++NALG QQ+PPN  + ++AL LT F+M+PV  KI  +   
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNI--  82

Query  124  PYIKGQI--TSQEALKRAEQ----PLKEFMLKNTRKKDLDLFVKLGN--INPNTNVKDLP  175
               K  I  + ++  ++ EQ    P + F+ KNT  KD+ +F   ++  +  +T +K+ +
Sbjct  83   --EKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  176  IRVVVPAFIISELKSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLF  235
            I +++PAF +++L +AF +GFL+Y+PF+ ID+++++IL+++GM+M++PV IS+PFKILLF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  236  ILVDGWN  242
            ILV+GW+
Sbjct  201  ILVGGWQ  207

279) fliP in NC_021499


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (446),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 132/188 (71%), Gaps = 8/188 (4%)

Query  56   LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTMFIMAPVFDRVNR  115
            LS +P FV++ TSF +I+IV++IL++ALG+QQ P+N  + ++AL LTMFIM+PV+ ++N 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  116  DALQPYLNEQLSAPDALAKAE----VPIKDFMLAQTRASDLELFMRLSKRT--DIASPDA  169
            +  +     + S  D   K E     P + F+  +T   D+ +F   +K+   + +    
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  170  APLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIM  229
             ++ IL+PAF  ++L +AF++GF++++PF+ IDL+++++L+A+GMMM+SP+ IS+PFKI+
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  230  LFVLVDGW  237
            LF+LV+GW
Sbjct  199  LFILVGGW  206

280) Entas_2744 in NC_015968


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYT  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEDKISMQDALEKGA-QPLREFMLRQTREADLALFA-----RLANTGELQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKI  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFKI
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

281) fliP in NC_021810


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

282) SU5_02582 in NC_017623


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

283) fliP in NC_021812


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

284) fliP in NC_011083


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLRAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

285) fliP in NC_021505


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (444),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 84/192 (44%), Positives = 135/192 (71%), Gaps = 6/192 (3%)

Query  9    SLLPFLIAAGTCYIKFSIVFVIVRNALGLQQVPSNMTLNAVALLLAMFVMSPVVQQGYDY  68
            S+LP+++  GT ++K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+MSPV+ +  D 
Sbjct  22   SVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDN  81

Query  69   YKENRVEFTRIDAVVDFLDNGLGGYREYLARYTDPDLAQFFERAQIAREDPRAVNSEFDE  128
               N ++++  D      +  L+ YR +L + T      FFE A   + +  +V      
Sbjct  82   IEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLK----  137

Query  129  RLEPSLFALLPAYALSEIKAAFKIGFYLYLPFvivdlvvssillalGMMMMSPVIISVPI  188
              E S+F LLPA++L+++ AAFK+GF LYLPF+ +DL++S+ILLALGMMM+SPV IS+P+
Sbjct  138  --EDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  189  KLVLFVALDGWS  200
            K++LF+ ++GW 
Sbjct  196  KILLFILVGGWQ  207

286) fliP in NC_007963


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 74/180 (42%), Positives = 127/180 (71%), Gaps = 12/180 (6%)

Query  66   TCFTRIIIVLSLLRTAIGTQSTPPNQVLLGLALFMTFFIMSPVLDRVH---EQAWVPFSE  122
            T F +I+IVL++L+ A+G Q  PPN  + ++AL +T FIMSPV+ +++   E+  + +S+
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  123  ERISLEQALEQGS-QPFREFMFGQTRETDLALFARMADADEMQGPEDV----PMRLLIPA  177
                + Q +EQG   P+R F+  +T E D+++F   + A    G + V    ++ +L+PA
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDISFFE--SAAKKKLGNDTVLKEDSIFILLPA  147

Query  178  FLTSELKTAFQIGFSIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQ  237
            F  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK++LF+LV+GWQ
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

287) Dd586_1882 in NC_013592


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (444),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 80/193 (42%), Positives = 139/193 (73%), Gaps = 2/193 (1%)

Query  18   LSLIPLAMIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGVALAATLFVMAPVFSDIKL  77
            LS++P+ +++ T FLKI +VL + +NA+G+QQVPPNMA+ +VAL  T+F+M+PV+  I+ 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  78   RFQDAPVDFSSLDALESSVTRGIEPLQKFMSRNTDPDILTHLHENSLRMWPAAMTEKITT  137
             ++  P+++S  D  +      + P + F+ +NT    ++ ++  + +        K   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLK--E  138

Query  138  QNILLILPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTlslplkll  197
            ++I+++LPA+ L++L+A+FK+GFL+Y+PFI IDLI+SN+LLALGM MV+P T+S+P+K+L
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  198  lfvlVNGWTRLLD  210
            LF+LV GW ++++
Sbjct  199  LFILVGGWQKIFE  211

288) A3UG_14735 in NC_018079


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 72/176 (41%), Positives = 124/176 (71%), Gaps = 4/176 (2%)

Query  60   TGFTRIIIVLGLMRNALGTPTAPPNQVLVGLSLFLTFFVMSPVFSQIYEK-AWQPLQENK  118
            T+F +I+IVLG+++NALG    PPN  + +++L LT F+MSPV+ +I ++   +P++ + 
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  119  ITMEVALTEGV-KPLRAFMLDQTRESDLAMFARIAKT--PDIASPEEVPLSILVPAFITS  175
                  + +G+  P R F+  +T E D++ F   AK    + +   E ++ IL+PAF  +
Sbjct  92   RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFTLG  151

Query  176  ELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPTTIALPFKLMLFVLVDGWQ  231
            +L +AF++GF +++PF+ IDL++++IL+ALGMMMV+P TI++PFK++LF+LV+GWQ
Sbjct  152  QLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

289) PC1_2212 in NC_012917


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 79/193 (41%), Positives = 140/193 (73%), Gaps = 2/193 (1%)

Query  18   LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDISK  77
            LS++P+ +++ T FLKI IVL I +NA+G+QQVPPNMA+ ++AL  T+F+M+PV+  I+ 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  78   RVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVNT  137
             ++ +P++ +D    Q      L P + F+ +N     ++ ++  + +         ++ 
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKE  138

Query  138  QNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTlslplkll  197
            +++++++PAF L++L+A+FK+GFL+Y+PFI IDLI+SN+LLALGM MV+P+T+S+P+K+L
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  198  lfvlVNGWTRLLD  210
            LF+LV GW ++++
Sbjct  199  LFILVGGWQKIFE  211

290) PCC21_022910 in NC_018525


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (443),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 79/193 (41%), Positives = 140/193 (73%), Gaps = 2/193 (1%)

Query  18   LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDISK  77
            LS++P+ +++ T FLKI IVL I +NA+G+QQVPPNMA+ ++AL  T+F+M+PV+  I+ 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  78   RVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVNT  137
             ++ +P++ +D    Q      L P + F+ +N     ++ ++  + +         ++ 
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKE  138

Query  138  QNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTlslplkll  197
            +++++++PAF L++L+A+FK+GFL+Y+PFI IDLI+SN+LLALGM MV+P+T+S+P+K+L
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  198  lfvlVNGWTRLLD  210
            LF+LV GW ++++
Sbjct  199  LFILVGGWQKIFE  211

291) fliP in NC_021500


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (441),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 83/191 (44%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYT  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  DAYQP---FSENKISVDVALERGA-QPLREFMLRQTREADLALFARLSNSPPIQGPEAV-  165
            +  +    +S+  +   V  E+G   P R F+ ++T E D+++F   S +    G ++V 
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFE--SAAKKKLGNDTVL  136

Query  166  ---SMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFK  222
               S+ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK
Sbjct  137  KEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFK  196

Query  223  LMLFVLVDGWQ  233
            ++LF+LV+GWQ
Sbjct  197  ILLFILVGGWQ  207

292) fliP in NC_009436


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 81/192 (43%), Positives = 136/192 (71%), Gaps = 14/192 (7%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYA  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  DAYQP---FSEDKISMQVALEKGA-QPLREFMLRQTREADLALFA-----RLANEGPIQG  161
            +  +    +S+  +  +V  E+G   P R F+ ++T E D+++F      +L+N+  ++ 
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  162  PEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
                ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PF
Sbjct  139  D---SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  222  KIMLFVLVDGWQ  233
            KI+LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

293) fliP in NC_009800


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (441),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 135/190 (72%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVISELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+ +++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

294) S70_18345 in NC_017731


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (441),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 74/177 (42%), Positives = 124/177 (71%), Gaps = 8/177 (4%)

Query  64   TSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVA---DQAYREAYQPFSE  120
            TSF +I+IVLG+L+NALG    PPN  + ++AL LT F+MSPV    ++        +S+
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  DKISLETALERGT-APFRTFMLGQTRESDLALFARIAK--VGEIQEAKDVPMRILVPAFI  177
              +     +E+G  +P+R F+  +T E D+++F   AK  +G+    K+ ++ IL+PAF 
Sbjct  92   RDFY--QKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFT  149

Query  178  TSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGW  234
             ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P T+S+PFK++LF+LV+GW
Sbjct  150  LGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

295) Calhy_0599 in NC_014652


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (443),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 140/192 (73%), Gaps = 8/192 (4%)

Query  64   PSILIMMTSFTRILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQ  123
            P ++++ TSF +I+IVLG+++NALG QQ+PPN  + ++AL LT F+M+PV  KI  +  +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  124  PYINGRITSQEALKRAEE----PLKEFMLKNTRKKDLDLFVKLSN--VNPNTNVKDLPLR  177
              IN   + ++  ++ E+    P + F+ KNT  KD+ +F   ++  +  +T +K+ ++ 
Sbjct  85   NPIN--YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIF  142

Query  178  VVVPAFIISELKSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFIL  237
            +++PAF +++L +AF +GFL+Y+PF+ ID+++++IL+++GM+M++PV IS+PFKILLFIL
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  238  VDGWNLVVESLV  249
            V+GW+ + E L+
Sbjct  203  VGGWQKIFEYLL  214

296) Calkr_0422 in NC_014721


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (443),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 140/192 (73%), Gaps = 8/192 (4%)

Query  64   PSILIMMTSFTRILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQ  123
            P ++++ TSF +I+IVLG+++NALG QQ+PPN  + ++AL LT F+M+PV  KI  +  +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  124  PYINGRITSQEALKRAEE----PLKEFMLKNTRKKDLDLFVKLSN--VNPNTNVKDLPLR  177
              IN   + ++  ++ E+    P + F+ KNT  KD+ +F   ++  +  +T +K+ ++ 
Sbjct  85   NPIN--YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIF  142

Query  178  VVVPAFIISELKSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFIL  237
            +++PAF +++L +AF +GFL+Y+PF+ ID+++++IL+++GM+M++PV IS+PFKILLFIL
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  238  VDGWNLVVESLV  249
            V+GW+ + E L+
Sbjct  203  VGGWQKIFEYLL  214

297) Calkro_0478 in NC_014720


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 140/192 (73%), Gaps = 8/192 (4%)

Query  63   PSILIMMTSFTRILIVLGFIRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQ  122
            P ++++ TSF +I+IVLG+++NALG QQ+PPN  + ++AL LT F+M+PV  KI  +  +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  123  PYINGRITSQEALKRAEE----PLKEFMLKNTRKKDLDLFVKLSN--VNPNTNVKDLPLR  176
              IN   + ++  ++ E+    P + F+ KNT  KD+ +F   ++  +  +T +K+ ++ 
Sbjct  85   NPIN--YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIF  142

Query  177  VVVPAFIISELKSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFIL  236
            +++PAF +++L +AF +GFL+Y+PF+ ID+++++IL+++GM+M++PV IS+PFKILLFIL
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  237  VDGWNLVVESLV  248
            V+GW+ + E L+
Sbjct  203  VGGWQKIFEYLL  214

298) Calla_1939 in NC_015949


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 140/192 (73%), Gaps = 8/192 (4%)

Query  64   PSILIMMTSFTRILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQ  123
            P ++++ TSF +I+IVLG+++NALG QQ+PPN  + ++AL LT F+M+PV  KI  +  +
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  124  PYINGRITSQEALKRAEE----PLKEFMLKNTRKKDLDLFVKLSN--VNPNTNVKDLPLR  177
              IN   + ++  ++ E+    P + F+ KNT  KD+ +F   ++  +  +T +K+ ++ 
Sbjct  85   NPIN--YSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIF  142

Query  178  VVVPAFIISELKSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFIL  237
            +++PAF +++L +AF +GFL+Y+PF+ ID+++++IL+++GM+M++PV IS+PFKILLFIL
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  238  VDGWNLVVESLV  249
            V+GW+ + E L+
Sbjct  203  VGGWQKIFEYLL  214

299) fliP in NC_013282


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (441),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 78/191 (41%), Positives = 135/191 (71%), Gaps = 12/191 (6%)

Query  29   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYS  88
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  89   DAYQP---FTENKISMEVALDRGA-QPLREFMLRQTREADLALFAKLANTQPIQGPEAV-  143
            +  +    +++  +   V  ++G   P R F+ ++T E D+++F   A+ +   G ++V 
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKK--LGNDTVL  136

Query  144  ---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFK  200
               ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +I++PFK
Sbjct  137  KEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFK  196

Query  201  LMLFVLVDGWQ  211
            ++LF+LV+GWQ
Sbjct  197  ILLFILVGGWQ  207

300) Toce_1113 in NC_014377


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 72/178 (41%), Positives = 134/178 (76%), Gaps = 7/178 (3%)

Query  71   TSFIRIVIVFSFVRSGLGTQQIPPNQVLIGLALFITFFVMAPVF----DDINKNAIQPYM  126
            TSF++IVIV+++++++LG QQ+PPN  + ++AL +T F+M+PV+    D+I+KN+I+ Y 
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN-YS  90

Query  127  REEITTQEALQLAQKPLRDFMFRQTREKDLALFLYHAKLQ-NQVRTLDDVPTYVLIPAFI  185
              ++  Q   Q    P R F+ ++T EKD+++F   AK +  +   L + + ++L+PAF 
Sbjct  91   DRDFY-QKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFT  149

Query  186  ISELKTAFQMGFIIFVPFLVIDMIVASTLMSMGMLMLPPVMISLPFKILLFVMVDGWN  243
            +++L +AF++GF++++PF+ ID+I+++ L+++GM+M++PV IS+PFKILLF++V+GW+
Sbjct  150  LGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

301) N646_3260 in NC_022359


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (442),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 75/187 (41%), Positives = 133/187 (72%), Gaps = 6/187 (3%)

Query  59   LSFLPAFILMATSFTRIVVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWSDIYE  118
            LS LP F++++TSF +IV+VL+IL++ALG+QQ PPN  + ++AL LT++IM PV   I +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  119  N-AFQPYDNGEITLIQAFSVAE-KPVREFMLAQTHQSSLEQMLRIANEPLDQNV---EDI  173
            N   +P + ++  + Q    +   P R F+  +T +  +      A+  L+++    ED 
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  174  SFAVVLPAFVISELKTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLIVSLPFKLVV  233
             F ++LPAF +++L +AF++GF+L++PF+ IDL+++++L+A+GMMM+SP+ +S+PFK+++
Sbjct  141  IF-ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  234  FVLVDGW  240
            F+LV+GW
Sbjct  200  FILVGGW  206

302) Athe_2157 in NC_012034


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  121 bits (441),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 137/190 (73%), Gaps = 4/190 (2%)

Query  63   PSILIMMTSFTRILIVLGFIRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIY--IQA  120
            P ++++ TSF +I+IVLG+++NALG QQ+PPN  + ++AL LT F+M+PV  KI   I+ 
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  121  YQPYINGRITSQEALKRAEEPLKEFMLKNTRKKDLDLFVKLSN--VNPNTNVKDLPLRVV  178
                 ++R   Q   +    P + F+ KNT  KD+ +F   ++  +  +T +K+ ++ ++
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFIL  144

Query  179  VPAFIISELKSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVD  238
            +PAF +++L +AF +GFL+Y+PF+ ID+++++IL+++GM+M++PV IS+PFKILLFILV+
Sbjct  145  LPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVG  204

Query  239  GWNLVIESLV  248
            GW+ ++E L+
Sbjct  205  GWQKIFEYLL  214

303) ENC_42160 in NC_021046


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (440),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 82/192 (43%), Positives = 135/192 (71%), Gaps = 14/192 (7%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYT  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  EAYQP---FSEDKISMQVALEKGA-QPLREFMLRQTREADLALFA-----RLANTGELQG  161
            +  +    +S+  +  +V  E+G   P R F+ ++T E D+++F      +L+N   L+ 
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  162  PEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
                ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PF
Sbjct  139  D---SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  222  KIMLFVLVDGWQ  233
            KI+LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

304) fliP in NC_009778


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (440),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 79/189 (42%), Positives = 135/189 (72%), Gaps = 8/189 (4%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYS  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFNENKISMEVALDRGA-QPLREFMLRQTREADLALFAKLANTQPIQGPEAV---  165
            +   +P+N +       +++G   P R F+ ++T E D+++F   A+ +   G ++V   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK--LGNDTVLKE  138

Query  166  -PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFKLM  224
             ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +I++PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  225  LFVLVDGWQ  233
            LF+LV+GWQ
Sbjct  199  LFILVGGWQ  207

305) fliP in NC_018405


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (440),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYT  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEDKISMQEALDKGA-QPLREFMLRQTREADLALFV-----RLSNTGELQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRVLLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKI  223
              ++ +LLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFKI
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

306) fliP in NC_017933


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (440),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 78/191 (41%), Positives = 135/191 (71%), Gaps = 12/191 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYS  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  DAYQP---FTENKISMEVALDRGA-QPLREFMLRQTREADLALFAKLANTQPIQGPEAV-  165
            +  +    +++  +   V  ++G   P R F+ ++T E D+++F   A+ +   G ++V 
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKK--LGNDTVL  136

Query  166  ---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFK  222
               ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +I++PFK
Sbjct  137  KEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFK  196

Query  223  LMLFVLVDGWQ  233
            ++LF+LV+GWQ
Sbjct  197  ILLFILVGGWQ  207

307) CSSP291_05910 in NC_020260


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (440),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 78/191 (41%), Positives = 135/191 (71%), Gaps = 12/191 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYS  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  DAYQP---FTENKISMEVALDRGA-QPLREFMLRQTREADLALFAKLANTQPIQGPEAV-  165
            +  +    +++  +   V  ++G   P R F+ ++T E D+++F   A+ +   G ++V 
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKK--LGNDTVL  136

Query  166  ---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFK  222
               ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +I++PFK
Sbjct  137  KEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFK  196

Query  223  LMLFVLVDGWQ  233
            ++LF+LV+GWQ
Sbjct  197  ILLFILVGGWQ  207

308) D782_1687 in NC_020063


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (439),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 135/190 (72%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYT  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEDKISLQEAMDKGS-QPLREFMLRQTREADLALFA-----RLANSAPIEGPE  163
            +   +P++     + + +++G   P R F+ ++T E D+++F      +L+N + +    
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPLRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

309) SerAS12_3042 in NC_015566


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (438),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  47   LSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  106
            LS LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  107  D-AYLPFSQDKISLDAALDKGS-QPLREFMLRQTRETDLALYA-----RLANQPPLAGPE  159
            +    P++     +   +++G   P R F+ ++T E D++++      +L+N+  L    
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  160  AVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKL  219
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  220  MLFVLVDGWQ  229
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

310) SerAS13_3044 in NC_017573


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (438),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  47   LSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  106
            LS LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  107  D-AYLPFSQDKISLDAALDKGS-QPLREFMLRQTRETDLALYA-----RLANQPPLAGPE  159
            +    P++     +   +++G   P R F+ ++T E D++++      +L+N+  L    
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  160  AVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKL  219
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  220  MLFVLVDGWQ  229
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

311) SerAS9_3041 in NC_015567


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (438),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  47   LSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  106
            LS LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  107  D-AYLPFSQDKISLDAALDKGS-QPLREFMLRQTRETDLALYA-----RLANQPPLAGPE  159
            +    P++     +   +++G   P R F+ ++T E D++++      +L+N+  L    
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  160  AVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKL  219
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  220  MLFVLVDGWQ  229
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

312) fliP in NC_004337


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (438),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  10   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  69
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  70   D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  122
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  123  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  182
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  183  MLFVLVDGWQ  192
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

313) fliP in NC_021591


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (438),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  47   LSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  106
            LS LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  107  D-AYLPFSQDKISLDAALDKGS-QPLREFMLRQTRETDLALYA-----RLANQPPLAGPE  159
            +    P++     +   +++G   P R F+ ++T E D++++      +L+N+  L    
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  160  AVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKL  219
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  220  MLFVLVDGWQ  229
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

314) fliP in NC_021659


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (438),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  47   LSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  106
            LS LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  107  D-AYLPFSQDKISLDAALDKGS-QPLREFMLRQTRETDLALYA-----RLANQPPLAGPE  159
            +    P++     +   +++G   P R F+ ++T E D++++      +L+N+  L    
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  160  AVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKL  219
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  220  MLFVLVDGWQ  229
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

315) fliP in NC_006138


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (438),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 130/189 (69%), Gaps = 8/189 (4%)

Query  66   IISVAPAIVLMMTCFTRIVIVLGFVRQAMGTQNMPPNQIVIGFALFLTFFIMSPTINKIN  125
            ++SV P +V++ T F +IVIVLG++++A+G Q++PPN  + + AL LT FIMSP I KIN
Sbjct  20   LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIN  79

Query  126  DTALQP---YLAKEISQGKALD-LTVFSMREFMFSQVQESELSFMAELTIEKEPKDKA--  179
            D   +    Y  +++ Q    + L+ +  R F+  +  E ++SF    +  K  +D    
Sbjct  80   DNIEKNPINYSDRDFYQKVEQGILSPY--RVFLKKNTLEKDISFFESAAKKKLGNDTVLK  137

Query  180  DIPTTTLIPAYMLSELKTAFSMGFMVYIPFLVIDMIVASVLMSMGMMMLPPVIISMPFKL  239
            + +   L+PA+ L++L +AF +GF++Y+PF+ ID+I++++L+++GMMM++PV IS+PFK+
Sbjct  138  EDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  240  LLFILVDGW  248
            LLFILV+GW
Sbjct  198  LLFILVGGW  206

316) fliP in NC_010694


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (438),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 76/189 (41%), Positives = 134/189 (71%), Gaps = 8/189 (4%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKIYT  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + +++L LT FIM+PV+ KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEDKISMQEAIDKGA-QPLREFMLRQTREADLALFARLANTAPIAGPEAV---  165
            +   +P++       + +++G   P R F+ ++T E D+++F   A+     G ++V   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK--LGNDTVLKE  138

Query  166  -PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLM  224
             ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TI++PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  225  LFVLVDGWQ  233
            LF+LV+GWQ
Sbjct  199  LFILVGGWQ  207

317) fliP in NC_017626


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

318) fliP in NC_008253


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

319) fliP in NC_011748


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

320) fliP in NC_017631


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

321) fliP in NC_020163


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

322) fliP in NC_010468


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

323) fliP in NC_012947


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

324) fliP in NC_012759


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

325) fliP in NC_004431


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

326) fliP in NC_017652


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

327) fliP in NC_017651


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

328) EcDH1_1700 in NC_017625


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

329) fliP in NC_017638


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

330) fliP in NC_009801


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

331) fliP in NC_011745


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

332) ETEC_2051 in NC_017633


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

333) fliP in NC_011741


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

334) fliP in NC_011750


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

335) fliP in NC_010473


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

336) fliP in NC_000913


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

337) fliP in NC_007779


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

338) fliP in NC_017660


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

339) EKO11_1826 in NC_016902


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

340) fliP in NC_011993


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

341) fliP in NC_022364


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

342) fliP in NC_017644


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

343) fliP in NC_013353


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

344) fliP in NC_018650


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

345) fliP in NC_018661


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

346) fliP in NC_018658


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

347) fliP in NC_013364


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

348) fliP in NC_011353


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

349) fliP in NC_002655


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

350) fliP in NC_002695


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

351) fliP in NC_013008


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

352) fliP in NC_013361


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

353) fliP in NC_013941


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

354) fliP in NC_017656


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

355) fliP in NC_017646


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

356) fliP in NC_017634


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

357) fliP in NC_017663


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

358) fliP in NC_011415


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

359) ECSF_1800 in NC_013654


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

360) fliP in NC_010498


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

361) fliP in NC_011751


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

362) fliP in NC_017635


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

363) fliP in NC_017664


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

364) fliP in NC_017906


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

365) fliP in NC_010658


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

366) fliP in NC_008258


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

367) fliP in NC_013716


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  E-AYQPFSEEKISMQEALDKGA-QPLREFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

368) fliP in NC_015663


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  59   LTFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  118
            L+ LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  119  E-AYLPFSQDKIGLDTALDKGA-QPLREFMLRQTRESDLALYA-----RLANQPPLAGPE  171
            +    P++    ++   +++G   P R F+ ++T E D++++      +L+N+  L    
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  172  AVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKL  231
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  232  MLFVLVDGWQ  241
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

369) fliP in NC_021741


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  120 bits (437),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 80/192 (42%), Positives = 134/192 (70%), Gaps = 14/192 (7%)

Query  64   LSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  123
            LS LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  124  DAY---LPFSQDKISLDIALDKGS-QPLREFMLRQTRETDLALYA-----KLANQPPLAG  174
            +     + +S+  +   +  ++G   P R F+ ++T E D++++      KL+N+  L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  175  PEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPF  234
                ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PF
Sbjct  139  D---SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  235  KLMLFVLVDGWQ  246
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

370) fliP in NC_013939


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (433),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 77/179 (44%), Positives = 130/179 (73%), Gaps = 12/179 (6%)

Query  64   TSFTRLIIVFSFLRSALGTQQSPPNQVLIGLALFLTFFIMSPVL----NDMYKNAVQPYM  119
            TSF +++IV+++L++ALG QQ PPN  + ++AL LT FIMSPV+    +++ KN+++ Y 
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN-YS  90

Query  120  DGKLNFTQALVEAK-KPLRKFLLKNTRKKELLTFIEISKVQRPKTPDDIPDS---VLIPA  175
            D   +F Q + ++   P R FL KNT  K++ +F+E +  ++      + +    +L+PA
Sbjct  91   DR--DFYQKVEQGILSPYRVFLKKNTLEKDI-SFFESAAKKKLGNDTVLKEDSIFILLPA  147

Query  176  FITSELQTAFEIGFLLFLPFLVIDFVVASVLLSMGMMMLPPVMISLPFKILLFVLVDGW  234
            F  ++L++AF +GFLL+LPF+ ID++++++LL++GMMM++PV IS+PFKILLF+LV+GW
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

371) fliP in NC_011601


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (434),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGVFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D++ F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

372) fliP in NC_011740


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (434),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 80/189 (43%), Positives = 134/189 (71%), Gaps = 8/189 (4%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLALFARLANTGPIQGPEAV---  165
            +   +P++       + +E+G   P R F+ ++T E D+++F   A+     G ++V   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK--LGNDTVLKE  138

Query  166  -PMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  225  LFVLVDGWQ  233
            LF+LV+GWQ
Sbjct  199  LFILVGGWQ  207

373) mlr8766 in NC_002678


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (434),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 72/169 (43%), Positives = 112/169 (67%), Gaps = 2/169 (1%)

Query  40   LVRNALGTQTIPPNIALYAVALILTMFLSAPVVEQTYDRMTDPKLHYQTFDDWVSAAKSG  99
            +++NALG Q +PPN+A+ +VAL+LTMF+ +PV+ +  D +    ++Y   D      ++ 
Sbjct  43   ILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGI  102

Query  100  SEPLRDHLKKFTNEEQRQFFLSSTEKVWPAEMRAKATVDDLSILVPSFLISELKRAFEIG  159
              P R  LKK T E +  FF S++ K    +   K   D + IL+P+F +++L  AF +G
Sbjct  103  LSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE--DSIFILLPAFTLGQLEAAFKVG  160

Query  160  FLLYLPFIVIDLIVTTILMAMGMSMVSPTLISVPFKLFVFVAIDGWSKL  208
            FLLYLPFI IDLI++ IL+A+GM MVSP  IS+PFK+++F+ ++GW K+
Sbjct  161  FLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKI  209

374) fliP in NC_011147


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (435),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLCAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P   F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

375) fliP in NC_006511


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (435),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ LP ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEQKISMQEALDKGA-QPLCAFMLRQTREADLALFA-----RLANSGPLQGPE  163
            +   +P++       + +++G   P   F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

376) fliP in NC_020211


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (434),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  59   LTFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  118
            L+ LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  119  D-AYLPFSQDKIGLEVALDKGA-QPLREFMLRQTRETDLALYA-----RLANQPPLAGPE  171
            +    P++    ++   +++G   P R F+ ++T E D++++      +L+N+  L    
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  172  AVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKL  231
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  232  MLFVLVDGWQ  241
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

377) ST548_p6298 in NC_020181


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (435),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 77/190 (41%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  59   LTFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLTLFLTFFIMSPVFDKVYQ  118
            L+ LP  +++ TSF +I+IVLG+L+NALG    PPN  + +++L LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  119  E-AYLPFSQDKIGLDTALDKGA-QPLREFMLRQTRESDLALYA-----RLANQPPLAGPE  171
            +    P++    ++   +++G   P R F+ ++T E D++++      +L+N+  L    
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  172  AVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKL  231
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  232  MLFVLVDGWQ  241
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

378) D781_2730 in NC_020064


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (436),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 134/192 (70%), Gaps = 14/192 (7%)

Query  68   LTFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLTLFLTFFIMSPVFDKVYQ  127
            L+ LP  +++ TSF +I+IVLG+L+NALG    PPN  + +++L LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  128  DAY---LPFSQDKIALDVAMEKGA-QPLREFMLRQTRETDLALYA-----RLAHQPPLAG  178
            +     + +S+  +   V  E+G   P R F+ ++T E D++++      +L+++  L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  179  PEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPF  238
                ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PF
Sbjct  139  D---SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  239  KLMLFVLVDGWQ  250
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

379) fliP in NC_008563


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (436),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFNEEKISMQEALEKGE-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P+N       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

380) fliP in NC_017628


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (436),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFNEEKISMQEALEKGE-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P+N       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

381) fliP in NC_022370


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (436),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFNEEKISMQEALEKGE-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P+N       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

382) fliP in NC_011742


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (436),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFNEEKISMQEALEKGE-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P+N       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

383) fliP in NC_017632


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (436),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFNEEKISMQEALEKGE-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P+N       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

384) fliP in NC_007946


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  119 bits (436),  Expect = 8e-29, Method: Compositional matrix adjust.
 Identities = 81/190 (43%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFNEEKISMQEALEKGE-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P+N       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

385) fliP in NC_017641


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  118 bits (431),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 133/190 (70%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMSPVI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQIREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++  E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

386) fliP in NC_016822


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  118 bits (430),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSSVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMS+VI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

387) fliP in NC_007384


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  118 bits (430),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 134/190 (71%), Gaps = 10/190 (5%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSSVIDKIYV  110
            L+ +P ++++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIMS+VI KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  D-AYQPFSEEKISMQEALEKGA-QPLREFMLRQTREADLGLFA-----RLANTGPLQGPE  163
            +   +P++       + +E+G   P R F+ ++T E D+++F      +L+N   L+   
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  164  AVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKL  223
              ++ ILLPA+  ++L +AF++GF +++PF+ IDL+I+++L+ALGMMMV+P TI++PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  224  MLFVLVDGWQ  233
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

388) fliP in NC_009832


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  118 bits (430),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 138/199 (70%), Gaps = 8/199 (4%)

Query  70   PVQTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFI  129
            P+  +V++  LS LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FI
Sbjct  11   PILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFI  70

Query  130  MSPVFDKVYQDAY---LPFSQDKISLDVAMDKGS-QPLREFMLRQTRETDLALYAKLAN-  184
            MSPV+ K+ ++     + +S+  +   V  ++G   P R F+ ++T E D++++   A+ 
Sbjct  71   MSPVILKINDNIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKK  128

Query  185  -LPPLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPP  243
             L   +     ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P
Sbjct  129  KLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSP  188

Query  244  ATISLPFKLMLFVLVDGWQ  262
             TIS+PFK++LF+LV+GWQ
Sbjct  189  VTISIPFKILLFILVGGWQ  207

389) fliP in NC_009828


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  117 bits (427),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 76/181 (42%), Positives = 128/181 (71%), Gaps = 11/181 (6%)

Query  64   TSFTRIIVVFSFLRNALGTRQTPPSQVLIGLALFLTFFIMQPVW---NDIYNDALTPYME  120
            TSF +I++V+++L+NALG +Q PP+  + ++AL LT FIM PV    ND  +     Y +
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KEIGYEELFSRMIGRVRQFMLKELVDHHNEDNVFLLASSVGKKFDK---IEDAPNSILIP  177
            +++ Y+ +   +++  R F+ K+ +    E ++ ++ S+  KK+++   + + +  IL+P
Sbjct  92   RDF-YQKVEQGILSPYRVFLKKNTL----EKDISFFESAAKKKLGNDTVLKEDSIFILLP  146

Query  178  AFVLGELEIGFKMGVLLYIPFIVIDMIVSSILLAMGMIMIPPVLISLPFKVLLFIVVNGW  237
            AF LG+LE +FK+G LLY+PFI ID+I+S+ILLA+GM+M++PV IS+PFK+LLFI+V GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  238  D  238
            +
Sbjct  207  Q  207

390) spaP in NC_010554


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 76/178 (43%), Positives = 127/178 (72%), Gaps = 2/178 (1%)

Query  24   GTCYLKFSIVLVMTRNALGVQQVPSNMVLNAIALMMALFVMTPITKNICYYIIENKVDMS  83
            GT +LK+ IVL + +NALG+QQVP+NM + ++AL++++F+M+P+  +I   I  N ++ S
Sbjct  31   GTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYS  90

Query  84   SPDAIESFSNEALGDYKKYLYHYSDPDLLAFFEQAQENRPNSDGDKENIENsllsllpay  143
              D  +   +  L+ Y+ +L   +    ++FFE A  ++  +D      E+S++ LLPA+
Sbjct  91   DRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLK--EDSIFILLPAF  148

Query  144  alsEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMSPITLSVPLKLILFIAMDGW  201
            +L+++ +AF +GF LYLPFI IDL++S ILLALGMMM+SP+T+S+P+K++LFI ++GW
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

391) fliP in NC_007712


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 77/190 (41%), Positives = 130/190 (69%), Gaps = 10/190 (5%)

Query  59   LTFIPAALLMMTSFTRIIIVLGLLRSAIGTPSAPPNQVLLGLALFLTFFVMSPVLDSIYT  118
            L+ +P  +++ TSF +I+IVLG+L++A+G    PPN  + ++AL LT F+MSPV+  I  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  119  E-AYLPLSENKISMQTALERGS-QPLRAFMLRQTREADLGLFA-----RLANVPPLEGPE  171
            +    P++ +       +E+G   P R F+ ++T E D+++F      +L+N   L    
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED-  139

Query  172  AVPMRILLPAYVTSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKL  231
              ++ ILLPA+  ++L +AF++GF L++PF+ IDL+++++L+ALGMMMV+P TIS+PFK+
Sbjct  140  --SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  232  MLFVLVDGWQ  241
            +LF+LV+GWQ
Sbjct  198  LLFILVGGWQ  207

392) fliP in NC_017168


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  80   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  139
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  140  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  190
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  191  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  250
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  251  KLMLFVLVDGWQ  262
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

393) fliP in NC_008150


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  52   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  111
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  112  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  162
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  163  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  222
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  223  KLMLFVLVDGWQ  234
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

394) fliP in NC_017265


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  80   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  139
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  140  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  190
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  191  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  250
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  251  KLMLFVLVDGWQ  262
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

395) fliP in NC_005810


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  52   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  111
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  112  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  162
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  163  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  222
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  223  KLMLFVLVDGWQ  234
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

396) fliP in NC_003143


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  80   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  139
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  140  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  190
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  191  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  250
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  251  KLMLFVLVDGWQ  262
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

397) fliP in NC_017154


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  80   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  139
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  140  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  190
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  191  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  250
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  251  KLMLFVLVDGWQ  262
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

398) fliP in NC_017160


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  80   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  139
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  140  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  190
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  191  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  250
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  251  KLMLFVLVDGWQ  262
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

399) fliP in NC_004088


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  52   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  111
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  112  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  162
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  163  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  222
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  223  KLMLFVLVDGWQ  234
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

400) fliP in NC_008149


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  52   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  111
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  112  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  162
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  163  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  222
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  223  KLMLFVLVDGWQ  234
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

401) fliP in NC_009381


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  80   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  139
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  140  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  190
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  191  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  250
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  251  KLMLFVLVDGWQ  262
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

402) fliP in NC_014029


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  80   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  139
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  140  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  190
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  191  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  250
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  251  KLMLFVLVDGWQ  262
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

403) fliP in NC_009708


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  80   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  139
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  140  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  190
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  191  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  250
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  251  KLMLFVLVDGWQ  262
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

404) fliP in NC_006155


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  52   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  111
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  112  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  162
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  163  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  222
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  223  KLMLFVLVDGWQ  234
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

405) fliP in NC_010634


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  80   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  139
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  140  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  190
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  191  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  250
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  251  KLMLFVLVDGWQ  262
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

406) fliP in NC_010465


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (422),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 132/192 (69%), Gaps = 14/192 (7%)

Query  80   LSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  139
            LS LP  +++ TSF +I+IVLG+L+NA+G    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  140  EAY---LPFSQDKISMDVALDKGS-QPLREFMLRQTRESDLALYA-----RLANLPPLEG  190
            +     + +S+  +   V  ++G   P R F+ ++T E D++++      +L+N   L  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  191  PEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPF  250
              +    ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PF
Sbjct  139  DSIF---ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  251  KLMLFVLVDGWQ  262
            K++LF+LV+GWQ
Sbjct  196  KILLFILVGGWQ  207

407) rhcR in NC_000914


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (425),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 68/169 (41%), Positives = 109/169 (65%), Gaps = 2/169 (1%)

Query  40   LVRNALGTQTIPPNIVLYAAALILTMFVSAPVAEQTYDRITDPRLRYQSLDDWAEAAKAG  99
            +++NALG Q +PPN+ + + AL+LTMF+ +PV  +  D I    + Y   D      ++ 
Sbjct  43   ILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGI  102

Query  100  SQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRAGVTADDFAILVPSFLISELKRAFEIG  159
              P    LKK T E +  FF S++ K   ++  + +  D + IL+P+F +++L  AF +G
Sbjct  103  LSPYRVFLKKNTLEKDISFFESAAKKKLGND--TVLKEDSIFILLPAFTLGQLEAAFKVG  160

Query  160  FLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDGWSRL  208
            FLLYLPFI IDLI++ IL+A+GM MVSP  I++PFK++LF+ ++GW ++
Sbjct  161  FLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKI  209

408) fliP in NC_009616


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  116 bits (424),  Expect = 7e-28, Method: Compositional matrix adjust.
 Identities = 73/181 (41%), Positives = 125/181 (70%), Gaps = 11/181 (6%)

Query  64   TSFTRIIVVFSFVRNALGTRQTPPNQILIGLALFLTFFIMQPVW---NDIYNNAITPYLN  120
            TSF +I++V+++++NALG +Q PPN  + ++AL LT FIM PV    ND  ++    Y +
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  SEIGYEEMFSRSMDRLRTFMLTEIKIHHNEDNIYILAENVKKQIDN---IEDTPNSILIP  177
             ++ Y+ +    +   R F+    K +  E +I ++    KK+++N   + + +  IL+P
Sbjct  92   RDF-YQKVEQGILSPYRVFL----KKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLP  146

Query  178  AFVIGELEIGFKMGILLYIPFIVMDMVVASILLSLGMIMIPPVLVSLPFKILLFVLVNGW  237
            AF +G+LE +FK+G+LLY+PFI +D+++++ILL+LGM+M++PV +S+PFKILLF+LV GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  238  D  238
            +
Sbjct  207  Q  207

409) spaP in NC_012751


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  115 bits (421),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 84/203 (42%), Positives = 145/203 (72%), Gaps = 7/203 (3%)

Query  2    DNDISLISILAFSTLLPFVIASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLAS  61
            ++ I LI I+ + ++LP+ +  GT ++K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+ 
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMMPIVKNIYEG--HKNAQFDVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAA  119
            F+M P++ +I +    +  ++  R++   +E  +  L  YR +L K +      FFE AA
Sbjct  69   FIMSPVILKINDNIEKNPINYSDRDFYQKVE--QGILSPYRVFLKKNTLEKDISFFESAA  126

Query  120  SDRKEEDFAGAEEEKPSIFALLPAYALSEIKSAFKIGFYIYLPFVVVDllissillalgm  179
              +  +D    E+   SIF LLPA++L+++ +AFK+GF +YLPF+ +DL+IS+ILLALGM
Sbjct  127  KKKLGNDTVLKED---SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGM  183

Query  180  mmmsPVTISVPIKLVLFVVLDGW  202
            MM+SPVTIS+P+K++LF++++GW
Sbjct  184  MMVSPVTISIPFKILLFILVGGW  206

410) Pat9b_2399 in NC_014837


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  115 bits (418),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 77/191 (41%), Positives = 132/191 (70%), Gaps = 12/191 (6%)

Query  50   LTFIPAVLLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLVGLALFLTFFIMAPTFDKIYS  109
            L+ +P  +++ TSF +I+IV+G+L+NALG    PPN  + ++AL LT FIM+P + KI  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  110  DAY---LPFSQDKISMDVAIDKGA-QPLREFMLRQTREADLALFARLANTPPIEGPEAV-  164
            +     + +S+  +   V  ++G   P R F+ ++T E D+++F   A+     G ++V 
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKL--GNDTVL  136

Query  165  ---PMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFK  221
               ++ ILLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK
Sbjct  137  KEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFK  196

Query  222  LMLFVLVDGWQ  232
            ++LF+LV+GWQ
Sbjct  197  ILLFILVGGWQ  207

411) fliP in NC_008800


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  115 bits (418),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 131/189 (70%), Gaps = 8/189 (4%)

Query  34   LSFLPAALLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  93
            LS LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  94   DAY---LPFSQDKISMEVAMDKGS-QPLREFMLRQTRESDLALYARLANlpplegpevvp  149
            +     + +S+  +   V  ++G   P R F+ ++T E D++++   A+    ++  +  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  150  lRI--LLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLM  207
              I  LLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  208  LFVLVDGWQ  216
            LF+LV+GWQ
Sbjct  199  LFILVGGWQ  207

412) YE105_C1710 in NC_015224


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  115 bits (418),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 131/189 (70%), Gaps = 8/189 (4%)

Query  56   LSFLPAALLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  115
            LS LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  116  D---AYLPFSQDKISMEVAMDKGS-QPLREFMLRQTRESDLALYARLANlpplegpevvp  171
            +     + +S+  +   V  ++G   P R F+ ++T E D++++   A+    ++  +  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  172  lRI--LLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLM  229
              I  LLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  230  LFVLVDGWQ  238
            LF+LV+GWQ
Sbjct  199  LFILVGGWQ  207

413) Y11_14301 in NC_017564


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  115 bits (418),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 131/189 (70%), Gaps = 8/189 (4%)

Query  56   LSFLPAALLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQ  115
            LS LP  +++ TSF +I+IVLG+L+NALG    PPN  + ++AL LT FIMSPV+ K+ +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  116  D---AYLPFSQDKISMEVAMDKGS-QPLREFMLRQTRESDLALYARLANlpplegpevvp  171
            +     + +S+  +   V  ++G   P R F+ ++T E D++++   A+    ++  +  
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  172  lRI--LLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLM  229
              I  LLPA+  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P +IS+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  230  LFVLVDGWQ  238
            LF+LV+GWQ
Sbjct  199  LFILVGGWQ  207

414) spaP in NC_022000


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  114 bits (415),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 75/178 (43%), Positives = 127/178 (72%), Gaps = 2/178 (1%)

Query  24   GTCYLKFSIVLVMTRNALGVQQVPSNMVLNAIALMMALFVMTPITKNICYYFIENKVDMS  83
            GT +LK+ IVL + +NALG+QQVP+NM + ++AL++++F+M+P+  +I   +  N ++ S
Sbjct  31   GTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYS  90

Query  84   SPDAIESFSNEALGDYKKYLYHYSDPDLLAFFEQAQENRPNSDGDKENIENsllsllpay  143
              D  +   +  L+ Y+ +L   +    ++FFE A  ++  +D      E+S++ LLPA+
Sbjct  91   DRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLK--EDSIFILLPAF  148

Query  144  alsEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMSPITLSVPLKLILFIAMDGW  201
            +L+++ +AF +GF LYLPFI IDL++S ILLALGMMM+SP+T+S+P+K++LFI ++GW
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

415) fliP in NC_011978


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  114 bits (416),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 74/179 (42%), Positives = 124/179 (70%), Gaps = 7/179 (3%)

Query  63   TSFTRIIVVFSLFRNALGTRQTPPNQVMIGLALFLTFLIMQPVW---NDIYNNAITPYLE  119
            TSF +I++V+++++NALG +Q PPN  + ++AL LT +IM PV    ND  ++    Y +
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  120  REIGYQEMFQRINNRIREFMIKELKNHHNEDNVFMLAQNANLEITRV-EEAPNSVLIPAF  178
            R++ YQ + Q I +  R F+ K+    +++ + F  A + +L    V  E +  +L+PAF
Sbjct  92   RDF-YQKVEQGILSPYRVFLKKN--TLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  179  VLGELEIAFKMGVVLYVPFIVIDMIVASILLSMGMIMIPPVFVSLPFKILIFVMANGWD  237
             LG+LE AFK+G +LY+PFI ID+I+++ILL++GM+M++PV +S+PFKIL+F++  GW+
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

416) Theth_0696 in NC_015707


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  114 bits (415),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 76/182 (42%), Positives = 130/182 (72%), Gaps = 13/182 (7%)

Query  65   TSFTRIIVVFSFLRNALGTRQTPPAQVLVGLALFLTFLIMQPV----WNDIYNNALQPYM  120
            TSF +I++V+++L+NALG +Q PP   + ++AL LT +IM PV     ++I +N+++ Y 
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN-YS  90

Query  121  NGQIGYQEMFSRIMNRVRIFMINELKNHHNEGKVFLLASSVGQKFDK---LEDAPNSILI  177
            + ++ YQ +   I++  R+F    LK++  E  + ++ S+  +K+++   L + +  IL+
Sbjct  91   DRDF-YQKVEQGILSPYRVF----LKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILL  145

Query  178  PAFVLGELELGFKMGMLLYIPFIVIDMVVSSILLAMGMIMIPPVLISLPFKVLLFVAVNG  237
            PAF LG+LE +FK+G LLY+PFI ID+++S+ILLA+GM+M++PV IS+PFK+LLF+ V G
Sbjct  146  PAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

Query  238  WD  239
            W+
Sbjct  206  WQ  207

417) Thein_0183 in NC_015681


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  112 bits (409),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 74/180 (42%), Positives = 131/180 (73%), Gaps = 12/180 (6%)

Query  65   TSFTRLVIVFSLLRHALGTQQTPPNQVlialalfltffiMKPVFSQAYNQAISPYLAGEI  124
            TSF ++VIV+++L++ALG QQ PPN  + ++AL LT FIM PV+ +  ++      + + 
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKN--PINY  89

Query  125  GDQEFFR----DVVKPFREFMFKNTRKKDLALMIRLSGAPKPENKEDV----STLTLIPA  176
            +D++F++    +++ P+R F+ KNT  KD+++    S+A K   ++ V    S + L+PA
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFE--SAAKKKLGNDTVLKEDSIFILLPA  147

Query  177  FMISELRTAFEIGFLLYIPFLIIDMVVASVLLSMGMMMLPPVMISLPIKVLLFVLVDGWH  236
            F +++L +AF +GFLLY+PF+ ID++++++LL++GMMM++PV IS+P+K+LLF+LV+GW+
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

418) Cabther_B0538 in NC_016025


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  112 bits (407),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 79/193 (41%), Positives = 133/193 (69%), Gaps = 11/193 (5%)

Query  59   TSFVKISVVLSILRNALGTQQVPPNQVITGISLILTIFIMAPVAEKMLEEAGLSDATAPV  118
            TSF+KI +VL+IL+NALG QQVPPN  IT+++L+LT+FIM+PV  K+ ++    +  +  
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNI---EKNPIN  88

Query  119  FTEMRADTLFKALDKGK-EPLRAFLERNAHEADRRLFLGLAQRLAQKNGKDPNAITVRDF  177
            +++     +++ +++G   P R FL +N+ E D  +F    +  A+K+  +   +    +
Sbjct  89   YSD---RDFYQKVEQGILSPYRVFLKKNTLEKDISFF----ESAAKKKLGNDTVLKEDSI  141

Query  178  RVVVPAFVTSQLTEAFQIGFLLFIPFLVIDMLVSNILQAMGMFMLSPTMISLPfklllfv  237
             +++PAF  +QL  AF++GFLL++PF+ ID+++SNIL A+GM M+SP  IS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  238  lvkGWVTLIQNLV  250
            LV GW  +++ L+
Sbjct  202  LVGGWQKIFEYLL  214

419) spaP in NC_008800


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  112 bits (409),  Expect = 9e-27, Method: Compositional matrix adjust.
 Identities = 89/203 (44%), Positives = 151/203 (75%), Gaps = 6/203 (2%)

Query  7    GDIPLLAIVAF--SSLLPFVIAAGTCYLKISIVLIMVRNAMGVQQVPsglalngiallls  64
            G+ P+L IV F   S+LP+ +  GT +LKI IVL +++NA+G+QQVP+ +A+ ++AL+L+
Sbjct  8    GGQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLT  67

Query  65   lFVMMPVIQDVNHYMRTEKVDFSNVDSVDKFIDGGLGSYTAYLKKYSDPELLNFFESLQQ  124
            +F+M PVI  +N+ +  + +++S+ D  +K  +G L++Y  +LKK +    ++FFES  +
Sbjct  68   MFIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK  127

Query  125  GRSEEESMAEADTREPALFSLLPAYALSEIKSAFEIGFYIYLPFVVidliissillalgm  184
             +  ++++     +E ++F LLPA++L+++ +AF +GF +YLPF+ IDLIIS+ILLALGM
Sbjct  128  KKLGNDTV----LKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGM  183

Query  185  mmmsPVTISVPVKLILFVAIDGW  207
            MM+SPVTIS+P K++LF+ ++GW
Sbjct  184  MMVSPVTISIPFKILLFILVGGW  206

420) fliP in NC_004547


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  110 bits (401),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 77/191 (41%), Positives = 134/191 (71%), Gaps = 12/191 (6%)

Query  64   LTFLPAALLMMTSFTRIIIVLSLLRNALGTPTAPPNQVllgltlfltffVMSPVLNRVYD  123
            L+ LP  +++ TSF +I+IVL++L+NALG    PPN  + +++L LT F+MSPV+ ++ D
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  124  EAY---LPFSQDQISMEVAIERGA-EPLREFMLRQTRETDLALFTRLAEIPEIQGPEAV-  178
            +     + +S+ ++   V  E+G   P R F+ ++T E D+++F   +      G ++V 
Sbjct  81   NIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFE--SAAKKKLGNDTVL  136

Query  179  ---PMRVLLPAFVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFK  235
               ++ +LLPAF  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK
Sbjct  137  KEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFK  196

Query  236  LMLFVLVDGWQ  246
            ++LF+LV+GWQ
Sbjct  197  ILLFILVGGWQ  207

421) fliP in NC_005085


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  109 bits (395),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 78/191 (41%), Positives = 138/191 (73%), Gaps = 14/191 (7%)

Query  55   LTFIPAMMLMMTAFTRIVIVLSLLRQALGTTQSPPNQVIVGLALFLTLFVMGPTF---DQ  111
            L+ +P  +++ T+F +IVIVL++L++ALG  Q PPN  I ++AL LT+F+M+P +   ++
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  112  VYAKAWVPFSDDKISFNQALDEGS-KPMKAFMLRQTREKDLAFFIEISQSPKPQSKEEVS  170
               K  + +SD    F Q +++G   P + F+ ++T EKD++FF     ++K +  ++  
Sbjct  81   NIEKNPINYSDR--DFYQKVEQGILSPYRVFLKKNTLEKDISFF---ESAAKKKLGNDTV  135

Query  171  MK-----TLIPAFAVSELKTAfqigfmifipfmiiDLVVASILMAMGMMMVSPVTISLPF  225
            +K      L+PAF++++L +AF++GF++++PF+ IDL++++IL+A+GMMMVSPVTIS+PF
Sbjct  136  LKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  226  KMMLFVLVDGW  236
            K++LF+LV+GW
Sbjct  196  KILLFILVGGW  206

422) Halha_0669 in NC_019978


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 74/180 (42%), Positives = 135/180 (75%), Gaps = 16/180 (8%)

Query  73   SFTRIIVVLSFLRRALATQRMPPNQVLIGLAIFLTIYIMAPV----GQDINQNALQPYLA  128
            SF +I++VL++L+ AL+ Q++PPN  + ++A+ LT++IM+PV     ++I++N+++ Y  
Sbjct  33   SFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPIN-YSD  91

Query  129  ----EKIDRGTAFDRTIKPLRRFMFKQTREKDIALFVNLSNSKRPKGP--KELSTYVLIP  182
                +K+++G      + P R F+ K+T EKDI++F + ++ K  ++   KE S ++L+P
Sbjct  92   RDFYQKVEQGI-----LSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLP  146

Query  183  AFIISELKTAFQIGFMIYLPFVVIDMIVASTlmsmgmmmlppvmISLPFKILLFVLVDGW  242
            AF +++L +AF++GF++YLPF+ ID+I+++ L+++GMMM++PV IS+PFKILLF+LV+GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

423) W5S_1792 in NC_017845


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  109 bits (397),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 73/180 (41%), Positives = 127/180 (71%), Gaps = 12/180 (6%)

Query  43   TSFTRIIIVLSLLRNALGTPTAPPNQVllgltlfltffVMSPVLNRVYEEAY---LPFSQ  99
            TSF +I+IVL++L+NALG    PPN  + +++L LT F+MSPV+ ++ ++     + +S+
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  100  DQISMEVAIERGA-EPVREFMLRQTRETDLALFTRLAEIPEIQGPEAV----PMRVLLPA  154
             ++   V  E+G   P R F+ ++T E D+++F   +      G ++V    ++ +LLPA
Sbjct  92   RDFYQKV--EQGILSPYRVFLKKNTLEKDISFFE--SAAKKKLGNDTVLKEDSIFILLPA  147

Query  155  FVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQ  214
            F  ++L +AF++GF +++PF+ IDL+++++L+ALGMMMV+P TIS+PFK++LF+LV+GWQ
Sbjct  148  FTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

424) fliP in NC_015662


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  108 bits (393),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 79/196 (41%), Positives = 134/196 (69%), Gaps = 13/196 (6%)

Query  47   IFFTLLSFISAGLLMMTSFTRIIIVFSLLRNALGTPYSPPNQVLVGLSLFLTFFIMSPVL  106
            IFF LLS ++  +++ TSF +I+IV+++L+NALG    PPN  + +++L LT FIMSPV+
Sbjct  17   IFF-LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVI  75

Query  107  DKIYHTAYIPFQKENISLE-----IALKRSII-PIHNFMKRQTKSSDLLLFFDLAKIPYV  160
             KI +     ++K+ I+         + ++I+ P + F+K++T   D+ +F   AK    
Sbjct  76   LKINDN----IEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLG  131

Query  161  KKKSLIPMRI--LLPAYMISELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVSPSTI  218
            +   L    I  LLPA+ +++L +AF++GF +++PF+ IDL+++++L+ALGMMMVSP TI
Sbjct  132  NDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTI  191

Query  219  SLPFKLILFVLADGWR  234
            S+PFK++LF+L +GW+
Sbjct  192  SIPFKILLFILVGGWQ  207

425) bglu_1g00190 in NC_012724


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  107 bits (389),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 77/188 (41%), Positives = 139/188 (74%), Gaps = 4/188 (2%)

Query  72   MLSFLPAIVLMMTSFTRIIIVLSLMRQALGTATTPPNQVLVGLALFLTLFVMSPVIDRAY  131
            +LS LP +V++ TSF +I+IVL+++++ALG    PPN  + ++AL LT+F+MSPVI +  
Sbjct  20   LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIN  79

Query  132  NDGYK-PFSAGTLPMDQAVQRG-LAPFKTFMLKQTREGDLALFAKIAKAPAMQGP--EDV  187
            ++  K P++ +     Q V++G L+P++ F+ K+T E D+++F   AK    ++    + 
Sbjct  80   DNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED  139

Query  188  PLPLLVPAFVTSELKTGFQIGFTIFIPFLIIDLvvasvlmsmgmmmvsPTTISLPFKLML  247
            ++ +L+PAF  ++L ++F++GF +++PF+ IDL+++++L+++GMMMVSP TIS+PFK++L
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  248  FVLVDGWQ  255
            F+LV+GWQ
Sbjct  200  FILVGGWQ  207

426) fliP in NC_010723


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  107 bits (388),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 85/205 (42%), Positives = 154/205 (76%), Gaps = 15/205 (7%)

Query  58   ILIFFTILAVLPSIVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIMSP  117
            I+IFF +L+VLP +V++ TSF +IVIV++++K+A+G+QQ  PN  +T++AL LT+FIMSP
Sbjct  15   IVIFF-LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSP  73

Query  118  VY----NEVNTKAFQPYIEQSITQEEAIEIGSKPIKDFMLKQTREKDLELF--VEINNVD  171
            V     ++++ ++++ Y ++ + Q     I S P + F+ K+T EKD+ +F     ++++
Sbjct  74   VILKINDNIEKNPIN-YSDRDFYQKVEQGILS-PYRVFLKKNTLEKDISFFESAAKKKLG  131

Query  172  KEELTRENIPFTTLIPAFAISELKTAFQIGFLIYLPFIVIDmvvasvlmsmgmmmlppam  231
            ++ + +E+  F  L+PAF++++L +AF++GFL+YLPFI ID++++++L+++GMMM++P  
Sbjct  132  NDTVLKEDSIFI-LLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVT  190

Query  232  vSLPFKLLLFVMVDGW-----YLLV  251
            +S+PFK+LLF++V+GW     YLLV
Sbjct  191  ISIPFKILLFILVGGWQKIFEYLLV  215

427) fliP in NC_010674


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 85/205 (42%), Positives = 152/205 (75%), Gaps = 15/205 (7%)

Query  58   ILIFFTILAVLPSIVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIMSP  117
            I+IFF +L+VLP +V++ TSF +IVIV++++K+A+G+QQ  PN  +T++AL LT+FIMSP
Sbjct  15   IVIFF-LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSP  73

Query  118  VY----NEVNTKAFQPYVEQSITQEEAIEIGSKPIKDFMLKQTREKDLELF--VEINNVN  171
            V     ++++ ++++ Y ++ + Q     I S P + F+ K+T EKD+ +F     +++ 
Sbjct  74   VILKINDNIEKNPIN-YSDRDFYQKVEQGILS-PYRVFLKKNTLEKDISFFESAAKKKLG  131

Query  172  KEELTRESVPFTTLIPAFAISELKTAFQMGFLIYLPFIVIDmvvasvlmsmgmmmlppam  231
            ++ + +E   F  L+PAF++++L +AF++GFL+YLPFI ID++++++L+++GMMM++P  
Sbjct  132  NDTVLKEDSIF-ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVT  190

Query  232  vSLPFKLLLFVMVDGW-----YLLV  251
            +S+PFK+LLF++V+GW     YLLV
Sbjct  191  ISIPFKILLFILVGGWQKIFEYLLV  215

428) Thebr_1270 in NC_014964


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  106 bits (387),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 77/185 (42%), Positives = 140/185 (76%), Gaps = 9/185 (4%)

Query  33   PSILIMMTSFTRIVIVLSFLRNALGLQQMPPNQVLIGLALFLTLFIMAP----IGQDINN  88
            P ++++ TSF +IVIVL++L+NALG+QQ+PPN  + ++AL LT+FIM+P    I ++I++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  89   NAIKPYTEGKITQEEAYQNAIKPLKNFMLKQTRQSDLNLFVSLAKIKVNNAEDL---PMR  145
            N+I+ Y++  + Q    Q  + P + F+ K+T + D+++F S AK K+ N   L   ++ 
Sbjct  85   NPIN-YSDRDFYQKVE-QGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIF  142

Query  146  VVIPSFIISELKTAFEigfiiyipfliidiVVASVLMSMGMFMLPPVLISLPFKVLLFIL  205
            +++P+F +++L +AF +GF++Y+PF+ ID++++++L+++GM M++PV IS+PFK+LLFIL
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  206  VDGWN  210
            V+GW+
Sbjct  203  VGGWQ  207

429) fliP in NC_010321


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  106 bits (387),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 77/185 (42%), Positives = 140/185 (76%), Gaps = 9/185 (4%)

Query  33   PSILIMMTSFTRIVIVLSFLRNALGLQQMPPNQVLIGLALFLTLFIMAP----IGQDINN  88
            P ++++ TSF +IVIVL++L+NALG+QQ+PPN  + ++AL LT+FIM+P    I ++I++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  89   NAIKPYTEGKITQEEAYQNAIKPLKNFMLKQTRQSDLNLFVSLAKIKVNNAEDL---PMR  145
            N+I+ Y++  + Q    Q  + P + F+ K+T + D+++F S AK K+ N   L   ++ 
Sbjct  85   NPIN-YSDRDFYQKVE-QGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIF  142

Query  146  VVIPSFIISELKTAFEigfiiyipfliidiVVASVLMSMGMFMLPPVLISLPFKVLLFIL  205
            +++P+F +++L +AF +GF++Y+PF+ ID++++++L+++GM M++PV IS+PFK+LLFIL
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  206  VDGWN  210
            V+GW+
Sbjct  203  VGGWQ  207

430) ETEC_3055 in NC_017633


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  106 bits (385),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 77/186 (42%), Positives = 137/186 (74%), Gaps = 4/186 (2%)

Query  18   PFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYYNSQN  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I  N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   EnlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVNFFEKIQKVNSSEDNEVIFDDDNIS  137
            + +++++     +  +  +S Y+ +L K +    ++FFE   K + ++D   ++ +D+I 
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDT--VLKEDSIF  142

Query  138  IISLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            I  LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  143  I--LLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGW  203
            + ++GW
Sbjct  201  ILVGGW  206

431) fliP in NC_015554


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  105 bits (383),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 80/193 (42%), Positives = 139/193 (73%), Gaps = 3/193 (1%)

Query  55   LSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILVGVSLFLSMFIMAPVFEEINE  114
            LS++P F+++ TSF +I++VL+IL++A+G+QQ P+N  + +V+L L+MFIM+PV+  IN+
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  115  R-ALQPYLSEQMTSLDAIEQAK-GPMRAFMLSQTRVKDLETFVRIAGDE-GKYADTDEVP  171
                +P    +    + +EQ+  +P R F+  +T  KD+  F   A    G+ +   E +
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  172  LTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLMLF  231
            + IL+PAF  ++L +AF++GF+L++PF+ IDL++++IL+A+GMMM+SP+ +S+PFK++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  232  VLVDGWNLIFGTL  244
            +LV+GW+ IF  L
Sbjct  201  ILVGGWQKIFEYL  213

432) B649_04650 in NC_020505


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  105 bits (383),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 75/181 (42%), Positives = 132/181 (73%), Gaps = 6/181 (3%)

Query  58   VLVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLALILTVFVMEPVATKAYEEGIKP--  115
            V++ T+F ++VIV+G+L++ALG QQVPP   +  +AL+LT+F+M PV  K  ++  K   
Sbjct  28   VVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPI  87

Query  116  -YSEEKITYDEAFEKTTEPFKSFMVRNTREKDLALFLRI--RHMENPQSIKEVPLTIVIP  172
             YS+  + Y+   +    P++ F+ +NT EKD+++F     + + N   +KE ++ I++P
Sbjct  88   NYSDRDF-YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLP  146

Query  173  AFMISELKTAFEIGFLLFLPFLVIDMVVAsilmsmgmmmlppvmismpFKILVFVMVDGW  232
            AF +++L +AF +GFLL+LPF+ ID+++++IL+++GMMM++PV IS+PFKIL+F++V+GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  233  N  233
            +
Sbjct  207  Q  207

433) Thewi_1381 in NC_015958


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  105 bits (382),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 75/185 (41%), Positives = 140/185 (76%), Gaps = 9/185 (4%)

Query  33   PSILIMMTSFTRIVVVLSFLRNALGLQQMPPNQVLIGLALFLTLYIMAPV----GQDINN  88
            P ++++ TSF +IV+VL++L+NALG+QQ+PPN  + ++AL LT++IM+PV     ++I++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  89   NAIKPYTEGKITQEEAYQNAIKPLKNFMLKQTRQSDLNLFVSLAKIKVNNAEDL---PMR  145
            N+I+ Y++  + Q    Q  + P + F+ K+T + D+++F S AK K+ N   L   ++ 
Sbjct  85   NPIN-YSDRDFYQKVE-QGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIF  142

Query  146  VVIPSFIISELKTAFEigfiiyipfliidiVVASVLMSMGMFMLPPVLISLPFKVLLFIL  205
            +++P+F +++L +AF +GF++Y+PF+ ID++++++L+++GM M++PV IS+PFK+LLFIL
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  206  VDGWN  210
            V+GW+
Sbjct  203  VGGWQ  207

434) fliP in NC_018632


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  105 bits (380),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 142/195 (73%), Gaps = 7/195 (3%)

Query  54   LSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVN-  112
            LS++P F+++ TSF +I++VL+IL++A+G+QQ P+N  + +V+L L+MFIM+PV+  +N 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  113  --ERALQPYLNEQLTSLDALEQAK-GPMRAFMLSQTRVKDLETFVRIAGDE-GKYADTNE  168
              E+    Y + ++   + +EQ+  +P R F+  +T  KD+  F   A    G+ +  +E
Sbjct  81   NIEKNPINYSDRDF--YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  169  VPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLM  228
             ++ IL+PAF  ++L +AF++GF+L++PF+ IDL++++IL+A+GMMM+SP+ +S+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  229  LFVLVDGWNLIFGTL  243
            LF+LV+GW+ IF  L
Sbjct  199  LFILVGGWQKIFEYL  213

435) fliP in NC_018692


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  105 bits (380),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 142/195 (73%), Gaps = 7/195 (3%)

Query  54   LSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVN-  112
            LS++P F+++ TSF +I++VL+IL++A+G+QQ P+N  + +V+L L+MFIM+PV+  +N 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  113  --ERALQPYLNEQLTSLDALEQAK-GPMRAFMLSQTRVKDLETFVRIAGDE-GKYADTNE  168
              E+    Y + ++   + +EQ+  +P R F+  +T  KD+  F   A    G+ +  +E
Sbjct  81   NIEKNPINYSDRDF--YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  169  VPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLM  228
             ++ IL+PAF  ++L +AF++GF+L++PF+ IDL++++IL+A+GMMM+SP+ +S+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  229  LFVLVDGWNLIFGTL  243
            LF+LV+GW+ IF  L
Sbjct  199  LFILVGGWQKIFEYL  213

436) fliP in NC_018678


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  105 bits (380),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 142/195 (73%), Gaps = 7/195 (3%)

Query  54   LSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVN-  112
            LS++P F+++ TSF +I++VL+IL++A+G+QQ P+N  + +V+L L+MFIM+PV+  +N 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  113  --ERALQPYLNEQLTSLDALEQAK-GPMRAFMLSQTRVKDLETFVRIAGDE-GKYADTNE  168
              E+    Y + ++   + +EQ+  +P R F+  +T  KD+  F   A    G+ +  +E
Sbjct  81   NIEKNPINYSDRDF--YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  169  VPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLM  228
             ++ IL+PAF  ++L +AF++GF+L++PF+ IDL++++IL+A+GMMM+SP+ +S+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  229  LFVLVDGWNLIFGTL  243
            LF+LV+GW+ IF  L
Sbjct  199  LFILVGGWQKIFEYL  213

437) Sulku_1113 in NC_014762


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  105 bits (381),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 76/181 (42%), Positives = 132/181 (73%), Gaps = 6/181 (3%)

Query  58   VLVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLALILTVFVMEPVATKAYDEGIKP--  115
            V++ T+F ++VIV+G+L++ALG QQVPP   +  +AL+LT+F+M PV  K  D+  K   
Sbjct  28   VVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPI  87

Query  116  -YSEEKITYDEAFEKTTEPFKNFMVRNTREKDLALFLRI--RHMQNPQSIKEVPLTIVIP  172
             YS+  + Y+   +    P++ F+ +NT EKD+++F     + + N   +KE ++ I++P
Sbjct  88   NYSDRDF-YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLP  146

Query  173  AFMISELKTAFEIGFLLFLPFLVIDMVVAsilmsmgmmmlppvmismpFKILVFVMVDGW  232
            AF +++L +AF +GFLL+LPF+ ID+++++IL+++GMMM++PV IS+PFKIL+F++V+GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  233  N  233
            +
Sbjct  207  Q  207

438) Acear_1628 in NC_014378


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  105 bits (382),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 80/198 (41%), Positives = 144/198 (73%), Gaps = 8/198 (4%)

Query  54   PLQIMLLLTVLSLAPAILIMLTSFVRIAVVLSLIRRALATRRMPPNQVIIGLAIFLTIFV  113
            P+ +++++ +LS+ P ++++ TSF++I +VL++++ AL+ +++PPN  I ++A+ LT+F+
Sbjct  11   PILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFI  70

Query  114  MAPVWGQIYDTAVQP---YLDDEINQMQAYEQGI-KPLRKFMFKQTREKDIALFVDLGEI  169
            M+PV  +I D   +    Y D ++ Q    EQGI  P R F+ K+T EKDI++F   +  
Sbjct  71   MSPVILKINDNIEKNPINYSDRDFYQKV--EQGILSPYRVFLKKNTLEKDISFFESAAKK  128

Query  170  ERPQNQM--EIPTYVLIPAFIISELRIAFQIGFIIYLPFIVIDMIVASTlmsmgmmmlpp  227
               ++ +  E + ++L+PAF +++L  AF++GF++YLPFI ID+I+++ L+++GMMM++P
Sbjct  129  KLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSP  188

Query  228  vmISLPFKILLFVLVDGW  245
            V IS+PFKILLF+LV+GW
Sbjct  189  VTISIPFKILLFILVGGW  206


 Score = 23.8 bits (70),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 13/48 (28%), Positives = 29/48 (61%), Gaps = 2/48 (4%)

Query  76   SFVRIAVVLSLIRRALATRRMPPNQVIIGLAIFLTIFVMAPVWGQIYD  123
            +F+ I +++S I  AL+   ++P  + I + I+L  F++   W +I++
Sbjct  166  PFIAIDLIISNILLALGMMMVSPVTISIPFKILL--FILVGGWQKIFE  211

439) fliP in NC_013949


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (378),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 80/178 (45%), Positives = 129/178 (73%), Gaps = 8/178 (4%)

Query  65   TSFTRLVIVFSFLRTALGTQQSPPTQILVSLAMVLTFFIMEPVV---RESYQKAIVPYLD  121
            TSF ++VIV+++L+ ALG QQ PP   + S+A+VLT FIM PV+    ++ +K  + Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  122  AKISYETAFDRGV-QPFKDFMLKNTREKDLALFYRI--RKLENPKTSADVSLTTLIPAFM  178
              + Y+   ++G+  P++ F+ KNT EKD+++F     +KL N     + S+  L+PAF 
Sbjct  92   RDF-YQKV-EQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFT  149

Query  179  ISELKTAFQIGFLLYLPFLVIDMVvssilmamgmmmlppvmiSLPFKILIFVLVDGFN  236
            +++L +AF++GFLLYLPF+ ID+++S+IL+A+GMMM++PV IS+PFKIL+F+LV+G +
Sbjct  150  LGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

440) fliP in NC_009802


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (378),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 75/176 (43%), Positives = 133/176 (76%), Gaps = 4/176 (2%)

Query  61   TSFLRLVIVFSFLRQAMGTQQVPPSTVLISLAMVLTFFIMEPVGQRSYDEGIKPYI--AE  118
            TSFL++VIV+++L++A+G QQVPP+  + S+A+VLT FIM PV  +  D+  K  I  ++
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  119  QIGYEEMLDKSLKPFKEFMVKNTREKDLALFFRI--RNLQNPANIEDIPLSIAMSAFMIS  176
            +  Y+ + +  L P++ F+ KNT EKD+++F     ++L N + + + ++ I ++AF ++
Sbjct  92   RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFTLG  151

Query  177  ELKTSFEIAFLLYLPFLVIDmvvssvlmamgmmmlppvmISLPFKLLIFVLVDGWN  232
            +L ++F ++FLLYLPF+ ID+++S++L+A+GMMM++PV IS+PFK+L+F+LV+GW+
Sbjct  152  QLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

441) fliP in NC_012796


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (378),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 84/196 (43%), Positives = 140/196 (72%), Gaps = 7/196 (3%)

Query  48   LLEILFALTVLSLAPSFVLTVTSFTRIIVVFSFLRQAMGVQQVPPTQILASLAIFLTAVI  107
            L+ I+F L+VL   P FV+  TSF +I++V+++L++A+G+QQVPP   ++S+A+ LT  I
Sbjct  14   LIVIFFLLSVL---PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFI  70

Query  108  MYPTGKAINDN-ALQPYMNEEIGFTEALKKAE-APLREFLFKHTREKDLSVFYTITKMER  165
            M P    INDN   +P    + +F + + ++  +P R FL K+T EKD+S F + +K   
Sbjct  71   MSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKL  130

Query  166  PKDKG--EVPTIMLAAGFMISELKTAFTIGFLIYIPFLILDMVISSIllamgmmmlppaT  223
             +D    E + ++L ++F +++L +AF +GFL+Y+PF+ +D++IS+ILLA+GMMM++P T
Sbjct  131  GNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVT  190

Query  224  IAMPFKLLLFVLVDGW  239
            I++PFK+LLF+LV+GW
Sbjct  191  ISIPFKILLFILVGGW  206

442) fliP in NC_018679


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (378),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 141/195 (73%), Gaps = 7/195 (3%)

Query  54   LSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVN-  112
            LS++P F+++ TSF +I++VL+IL++A+G+QQ P+N  + +V+L L+MFIM+PV+  +N 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  113  --ERALQPYLNEQLTSLDALEQAK-GPMRAFMLSQTRVKDLETFVRIAGDE-GKYADTDE  168
              E+    Y + ++   + +EQ+  +P R F+  +T  KD+  F   A    G+ +   E
Sbjct  81   NIEKNPINYSDRDF--YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  169  VPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLM  228
             ++ IL+PAF  ++L +AF++GF+L++PF+ IDL++++IL+A+GMMM+SP+ +S+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  229  LFVLVDGWNLIFGTL  243
            LF+LV+GW+ IF  L
Sbjct  199  LFILVGGWQKIFEYL  213

443) Clole_2443 in NC_015275


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (379),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 139/190 (74%), Gaps = 4/190 (2%)

Query  63   IISLAPSILIMMTSFLRIIIALHFVRSAIGTQTMPPNQILVGLALFLTFFVMSPVFMQIK  122
            ++S+ P ++++ TSFL+I+I L ++++A+G Q +PPN  + ++AL LT F+MSPV+++I+
Sbjct  20   LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIN  79

Query  123  TN-AIDPLEKQQITQEQAIERGI-QPLKEFMLKQTRDEDITLFMDLAHLEPYTEDTDLVK  180
             N   +P++  +    Q +E+GI  P + F+ K+T + DI++F   A      +DT L K
Sbjct  80   DNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK-KKLGNDTVL-K  137

Query  181  EMPLHVIIPAFIISELRAGFIIGFLVYIPFIIIDMVVaatlmsmgmmmlppamISLPFKV  240
            E ++ +++PAF +++L A+F +GFL+Y+PFI ID++++  L+++GMMM++P  IS+PFK+
Sbjct  138  EDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  241  LLFILVDGWN  250
            LLFILV+GW+
Sbjct  198  LLFILVGGWQ  207

444) Thit_1219 in NC_013921


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (377),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 77/185 (42%), Positives = 143/185 (78%), Gaps = 9/185 (4%)

Query  33   PSILIMMTSFTRIVIVLSFLRNALGLQQMPPNQVLIGLALFLTLFIMAP----IGQDINN  88
            P ++++ TSF +IVIVL++L+NALG+QQ+PPN  + ++AL LT+FIM+P    I ++I++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  89   NAIKPYTEGKITQEEAYQNAIKPLKSFMLKQTRQNDLNLFVSLAKINVSN---VEDLPMR  145
            N+I+ Y++  + Q    Q  + P + F+ K+T ++D+++F S AK +++N   + + ++ 
Sbjct  85   NPIN-YSDRDFYQKVE-QGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIF  142

Query  146  VVIPAFIISELKTAFEigfiiyipfliidiiVASVLMSMGMFMLPPVLISLPFKVLLFIL  205
            +++PAF +++L +AF +GF++Y+PF+ ID+I++++L+++GM M++PV IS+PFK+LLFIL
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  206  VDGWN  210
            V+GW+
Sbjct  203  VGGWQ  207

445) Tmath_1270 in NC_014209


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (377),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 77/185 (42%), Positives = 143/185 (78%), Gaps = 9/185 (4%)

Query  33   PSILIMMTSFTRIVIVLSFLRNALGLQQMPPNQVLIGLALFLTLFIMAP----IGQDINN  88
            P ++++ TSF +IVIVL++L+NALG+QQ+PPN  + ++AL LT+FIM+P    I ++I++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  89   NAIKPYTEGKITQEEAYQNAIKPLKSFMLKQTRQNDLNLFVSLAKINVSN---VEDLPMR  145
            N+I+ Y++  + Q    Q  + P + F+ K+T ++D+++F S AK +++N   + + ++ 
Sbjct  85   NPIN-YSDRDFYQKVE-QGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIF  142

Query  146  VVIPAFIISELKTAFEigfiiyipfliidiiVASVLMSMGMFMLPPVLISLPFKVLLFIL  205
            +++PAF +++L +AF +GF++Y+PF+ ID+I++++L+++GM M++PV IS+PFK+LLFIL
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  206  VDGWN  210
            V+GW+
Sbjct  203  VGGWQ  207

446) fliP in NC_020514


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (379),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 79/196 (41%), Positives = 141/196 (72%), Gaps = 9/196 (4%)

Query  55   LSLLPAFVMMMTSFTRIIIVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEKINE  114
            LS+LP FV++ TSF +I+IVL+IL++A+G+QQ P+N  + +V+L L+MFIM+PV+ KIN+
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  115  TALQPYLNEELTSIQAYEIGKE----PLRAFMLAQTRVKDLETFVQIGGMDGQFQDPV--  168
               +     + +  + Y+   +    P R F+  +T  KD+ +F + ++     +D V  
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDI-SFFESAAKKKLGNDTVLK  137

Query  169  DVPMNVLIPAFVTSELKTAFQIGFMLFIPFLILDLVVasilmamgmmmlspmiVSLPFKL  228
            + ++ +L+PAF  ++L +AF++GF+L++PF+ +DL++++IL+A+GMMM+SP+ +S+PFK+
Sbjct  138  EDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  229  MLFVLVDGWNLIFGTL  244
            +LF+LV+GW+ IF  L
Sbjct  198  LLFILVGGWQKIFEYL  213

447) fliP in NC_019393


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (377),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 141/195 (73%), Gaps = 7/195 (3%)

Query  54   LSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVN-  112
            LS++P F+++ TSF +I++VL+IL++A+G+QQ P+N  + +V+L L+MFIM+PV+  +N 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  113  --ERALQPYLNEQLTSLDALEQAK-GPMRAFMLSQTRVKDLETFVRIAGDE-GKYADTDE  168
              E+    Y + ++   + +EQ+  +P R F+  +T  KD+  F   A    G+ +   E
Sbjct  81   NIEKNPINYSDRDF--YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  169  VPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLM  228
             ++ IL+PAF  ++L +AF++GF+L++PF+ IDL++++IL+A+GMMM+SP+ +S+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  229  LFVLVDGWNLIFGTL  243
            LF+LV+GW+ IF  L
Sbjct  199  LFILVGGWQKIFEYL  213

448) MADE_1005950 in NC_011138


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (377),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 141/195 (73%), Gaps = 7/195 (3%)

Query  54   LSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVN-  112
            LS++P F+++ TSF +I++VL+IL++A+G+QQ P+N  + +V+L L+MFIM+PV+  +N 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  113  --ERALQPYLNEQLTSLDALEQAK-GPMRAFMLSQTRVKDLETFVRIAGDE-GKYADTDE  168
              E+    Y + ++   + +EQ+  +P R F+  +T  KD+  F   A    G+ +   E
Sbjct  81   NIEKNPINYSDRDF--YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  169  VPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLM  228
             ++ IL+PAF  ++L +AF++GF+L++PF+ IDL++++IL+A+GMMM+SP+ +S+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  229  LFVLVDGWNLIFGTL  243
            LF+LV+GW+ IF  L
Sbjct  199  LFILVGGWQKIFEYL  213

449) fliP in NC_021716


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (377),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 141/195 (73%), Gaps = 7/195 (3%)

Query  54   LSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVN-  112
            LS++P F+++ TSF +I++VL+IL++A+G+QQ P+N  + +V+L L+MFIM+PV+  +N 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  113  --ERALQPYLNEQLTSLDALEQAK-GPMRAFMLSQTRVKDLETFVRIAGDE-GKYADTDE  168
              E+    Y + ++   + +EQ+  +P R F+  +T  KD+  F   A    G+ +   E
Sbjct  81   NIEKNPINYSDRDF--YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  169  VPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLM  228
             ++ IL+PAF  ++L +AF++GF+L++PF+ IDL++++IL+A+GMMM+SP+ +S+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  229  LFVLVDGWNLIFGTL  243
            LF+LV+GW+ IF  L
Sbjct  199  LFILVGGWQKIFEYL  213

450) fliP in NC_021710


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (377),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 141/195 (73%), Gaps = 7/195 (3%)

Query  54   LSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVN-  112
            LS++P F+++ TSF +I++VL+IL++A+G+QQ P+N  + +V+L L+MFIM+PV+  +N 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  113  --ERALQPYLNEQLTSLDALEQAK-GPMRAFMLSQTRVKDLETFVRIAGDE-GKYADTDE  168
              E+    Y + ++   + +EQ+  +P R F+  +T  KD+  F   A    G+ +   E
Sbjct  81   NIEKNPINYSDRDF--YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  169  VPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLM  228
             ++ IL+PAF  ++L +AF++GF+L++PF+ IDL++++IL+A+GMMM+SP+ +S+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  229  LFVLVDGWNLIFGTL  243
            LF+LV+GW+ IF  L
Sbjct  199  LFILVGGWQKIFEYL  213

451) fliP in NC_021717


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (377),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 141/195 (73%), Gaps = 7/195 (3%)

Query  54   LSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVN-  112
            LS++P F+++ TSF +I++VL+IL++A+G+QQ P+N  + +V+L L+MFIM+PV+  +N 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  113  --ERALQPYLNEQLTSLDALEQAK-GPMRAFMLSQTRVKDLETFVRIAGDE-GKYADTDE  168
              E+    Y + ++   + +EQ+  +P R F+  +T  KD+  F   A    G+ +   E
Sbjct  81   NIEKNPINYSDRDF--YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  169  VPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLM  228
             ++ IL+PAF  ++L +AF++GF+L++PF+ IDL++++IL+A+GMMM+SP+ +S+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  229  LFVLVDGWNLIFGTL  243
            LF+LV+GW+ IF  L
Sbjct  199  LFILVGGWQKIFEYL  213

452) fliP in NC_021712


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (377),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 141/195 (73%), Gaps = 7/195 (3%)

Query  54   LSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVN-  112
            LS++P F+++ TSF +I++VL+IL++A+G+QQ P+N  + +V+L L+MFIM+PV+  +N 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  113  --ERALQPYLNEQLTSLDALEQAK-GPMRAFMLSQTRVKDLETFVRIAGDE-GKYADTDE  168
              E+    Y + ++   + +EQ+  +P R F+  +T  KD+  F   A    G+ +   E
Sbjct  81   NIEKNPINYSDRDF--YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  169  VPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLM  228
             ++ IL+PAF  ++L +AF++GF+L++PF+ IDL++++IL+A+GMMM+SP+ +S+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  229  LFVLVDGWNLIFGTL  243
            LF+LV+GW+ IF  L
Sbjct  199  LFILVGGWQKIFEYL  213

453) fliP in NC_021714


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (377),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 141/195 (73%), Gaps = 7/195 (3%)

Query  54   LSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVN-  112
            LS++P F+++ TSF +I++VL+IL++A+G+QQ P+N  + +V+L L+MFIM+PV+  +N 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  113  --ERALQPYLNEQLTSLDALEQAK-GPMRAFMLSQTRVKDLETFVRIAGDE-GKYADTDE  168
              E+    Y + ++   + +EQ+  +P R F+  +T  KD+  F   A    G+ +   E
Sbjct  81   NIEKNPINYSDRDF--YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  169  VPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLM  228
             ++ IL+PAF  ++L +AF++GF+L++PF+ IDL++++IL+A+GMMM+SP+ +S+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  229  LFVLVDGWNLIFGTL  243
            LF+LV+GW+ IF  L
Sbjct  199  LFILVGGWQKIFEYL  213

454) fliP in NC_021713


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (377),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 80/195 (42%), Positives = 141/195 (73%), Gaps = 7/195 (3%)

Query  54   LSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVN-  112
            LS++P F+++ TSF +I++VL+IL++A+G+QQ P+N  + +V+L L+MFIM+PV+  +N 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  113  --ERALQPYLNEQLTSLDALEQAK-GPMRAFMLSQTRVKDLETFVRIAGDE-GKYADTDE  168
              E+    Y + ++   + +EQ+  +P R F+  +T  KD+  F   A    G+ +   E
Sbjct  81   NIEKNPINYSDRDF--YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  169  VPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLM  228
             ++ IL+PAF  ++L +AF++GF+L++PF+ IDL++++IL+A+GMMM+SP+ +S+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  229  LFVLVDGWNLIFGTL  243
            LF+LV+GW+ IF  L
Sbjct  199  LFILVGGWQKIFEYL  213

455) fliP in NC_007575


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  104 bits (377),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 75/187 (41%), Positives = 134/187 (72%), Gaps = 12/187 (6%)

Query  57   PSMVLVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLGMILTFFVMEPVGIKAYEDGIK  116
            P  V++ T+F ++VIV+G+L++ALG QQVPP   +  ++++LT F+M PV +K  ++  K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  117  PYIEEKIGYEEA--FDKTAL----PFKNFMIRNTREKDLALFFRI--RKMQNPTTIAEVP  168
                + I Y +   ++K       P++ F+ +NT EKD+++F     +K+ N T + E +
Sbjct  85   ----NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  169  LSIIIPAFVISELKTAFEIGFLLFLPFLVIDMVvasilmsmgmmmlppvmiaLPFKILIF  228
            + I++PAF +++L +AF +GFLL+LPF+ ID+++++IL+++GMMM++PV I++PFKIL+F
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  229  ILIDGWN  235
            IL++GW+
Sbjct  201  ILVGGWQ  207

456) fliP in NC_003030


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  103 bits (375),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 135/187 (73%), Gaps = 14/187 (7%)

Query  71   PSIIMMMTSFTRIIVVLGFLRTSMGTQQSPPNQVLIGLALFLTMFIMMPTY----KQINK  126
            P ++++ TSF +I++VLG+L+ ++G QQ PPN  + ++AL LTMFIM P       +I+K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  127  NAIQPYLNKSISQ--QQALLEMEKPLRTFMYKQTYQKDLKLFIDLDNQ---SGKITKDTV  181
            N+I+ Y ++ + Q  +Q++L    P R F+ K+T +KD+ +F    ++   ++ + K+  
Sbjct  85   NPIN-YSDRDFYQKVEQGILS---PYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  182  PFHDIVPAFIISELKTAFTIGFLLYIPFLIIDLVVASIlmsmgmmmlppvmvsmPFKLLL  241
             F  ++PAF +++L +AF +GFLLY+PF+ IDL++++IL+++GMMM++PV +S+PFK+LL
Sbjct  141  IFI-LLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  242  FIMVDGW  248
            FI+V+GW
Sbjct  200  FILVGGW  206

457) fliP in NC_015687


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  103 bits (375),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 135/187 (73%), Gaps = 14/187 (7%)

Query  71   PSIIMMMTSFTRIIVVLGFLRTSMGTQQSPPNQVLIGLALFLTMFIMMPTY----KQINK  126
            P ++++ TSF +I++VLG+L+ ++G QQ PPN  + ++AL LTMFIM P       +I+K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  127  NAIQPYLNKSISQ--QQALLEMEKPLRTFMYKQTYQKDLKLFIDLDNQ---SGKITKDTV  181
            N+I+ Y ++ + Q  +Q++L    P R F+ K+T +KD+ +F    ++   ++ + K+  
Sbjct  85   NPIN-YSDRDFYQKVEQGILS---PYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  182  PFHDIVPAFIISELKTAFTIGFLLYIPFLIIDLVVASIlmsmgmmmlppvmvsmPFKLLL  241
             F  ++PAF +++L +AF +GFLLY+PF+ IDL++++IL+++GMMM++PV +S+PFK+LL
Sbjct  141  IFI-LLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  242  FIMVDGW  248
            FI+V+GW
Sbjct  200  FILVGGW  206

458) fliP in NC_017295


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  103 bits (375),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 135/187 (73%), Gaps = 14/187 (7%)

Query  71   PSIIMMMTSFTRIIVVLGFLRTSMGTQQSPPNQVLIGLALFLTMFIMMPTY----KQINK  126
            P ++++ TSF +I++VLG+L+ ++G QQ PPN  + ++AL LTMFIM P       +I+K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  127  NAIQPYLNKSISQ--QQALLEMEKPLRTFMYKQTYQKDLKLFIDLDNQ---SGKITKDTV  181
            N+I+ Y ++ + Q  +Q++L    P R F+ K+T +KD+ +F    ++   ++ + K+  
Sbjct  85   NPIN-YSDRDFYQKVEQGILS---PYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  182  PFHDIVPAFIISELKTAFTIGFLLYIPFLIIDLVVASIlmsmgmmmlppvmvsmPFKLLL  241
             F  ++PAF +++L +AF +GFLLY+PF+ IDL++++IL+++GMMM++PV +S+PFK+LL
Sbjct  141  IFI-LLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  242  FIMVDGW  248
            FI+V+GW
Sbjct  200  FILVGGW  206

459) spaP in NC_011147


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  103 bits (373),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLSKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

460) spaP in NC_006511


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  103 bits (373),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLSKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

461) fliP in NC_012438


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  103 bits (372),  Expect = 9e-24, Method: Compositional matrix adjust.
 Identities = 77/188 (41%), Positives = 131/188 (70%), Gaps = 7/188 (3%)

Query  46   LSIAPAILISMTSFVRIVIVLSLLRHALGIPTAPPNQVIVGLALFLTFFIMKPVFDKINE  105
            LS+ P +++  TSF++IVIVL++L++ALGI   PPN  I ++AL LT FIM PV+ KIN+
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  106  -VSLTP--YLKKQISDVQAIENAKQPLKEFMLKNTRKEDLKLFIDISKEKPQK---LEDV  159
             +   P  Y  +++ + +  +    P + F+ KNT   D+ +F   +K K  +   L + 
Sbjct  81   NIEKNPINYSDRDFYQ-KVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED  139

Query  160  SMTTLIPAFMISEIKTAFEIVFIIYLPFIVIDFVVASILmsmgmmmvppmFISLPFKLML  219
            S+  L+PAF ++++ +AF + F++YLPFI ID+++++IL+++GMMMV+P+ IS+PFK++L
Sbjct  140  SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  220  FVLADGWE  227
            F+L +GW+
Sbjct  200  FILVGGWQ  207

462) spaP in NC_015761


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (371),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 89/208 (43%), Positives = 153/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEGVSFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFESAQL  120
            F+M P++      +E + ++++D   + + V++G L  YR +L K +    + FFESA  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKEEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T      KE+    SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDTVL----KED----SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

463) A464_2914 in NC_021870


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (371),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 89/208 (43%), Positives = 153/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEGVSFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFESAQL  120
            F+M P++      +E + ++++D   + + V++G L  YR +L K +    + FFESA  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKEEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T      KE+    SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDTVL----KED----SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

464) spaP in NC_003198


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (369),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 89/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ SVAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

465) STBHUCCB_29360 in NC_016832


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (369),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 89/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ SVAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

466) spaP in NC_021176


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (369),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 89/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ SVAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

467) spaP in NC_004631


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (369),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 89/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ SVAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

468) fliP in NC_020802


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (369),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 81/188 (44%), Positives = 136/188 (73%), Gaps = 7/188 (3%)

Query  55   LSFLPAMLVLMTSFTRIVVVMSILRQALGLQQTPSNQVINGIALFLTFFIMTPVFDKINE  114
            LS LP  +V+ TSF +IV+V++IL++ALG+QQ P+N  I ++AL LT FIM+PV+ KIN+
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  115  E-ALQPYLNEDMNIVQAIEQGK-KPLMAFMLAQTRLKDLETFLEIANVQVDT----PEEV  168
            +   +P    D ++ Q +EQG   P   F+  +T  KD+  F   A+ +++      E+ 
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  169  PFTVLIPAFVTSELKTAFQIGFMIFIPFLIIDLVVasilmamgmmmlspmiVSLPFKLML  228
             F +L+PAF  ++L +AF++GF++++PF+ IDL++++IL+A+GMMM+SP+ +S+PFK++L
Sbjct  141  IF-ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILL  199

Query  229  FVLVDGWN  236
            F+LV+GW+
Sbjct  200  FILVGGWQ  207

469) SE451236_20545 in NC_021820


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

470) spaP in NC_011149


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

471) SEEB0189_05720 in NC_021844


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

472) SBOV29161 in NC_022241


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

473) spaP in NC_006905


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

474) CFSAN002050_20750 in NC_021818


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

475) spaP in NC_011205


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

476) spaP in NC_011294


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

477) spaP in NC_011274


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

478) spaP in NC_022221


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

479) spaP in NC_016831


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

480) spaP in NC_021810


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

481) SU5_03371 in NC_017623


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

482) CFSAN002069_17820 in NC_021812


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

483) spaP in NC_011083


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

484) spaP in NC_020307


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

485) spaP in NC_011080


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

486) SN31241_39820 in NC_021902


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

487) spaP in NC_010102


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

488) spaP in NC_012125


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

489) I137_13760 in NC_021984


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

490) spaP in NC_011094


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

491) spaP in NC_016856


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

492) spaP in NC_017046


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

493) STMMW_28521 in NC_016854


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

494) spaP in NC_003197


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

495) spaP in NC_016810


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

496) spaP in NC_016857


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

497) spaP in NC_016860


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

498) spaP in NC_021151


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

499) spaP in NC_016863


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

500) CFSAN001921_02625 in NC_021814


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  102 bits (368),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/208 (43%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ +VAL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

501) spaP in NC_011353


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  101 bits (366),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 77/186 (42%), Positives = 131/186 (71%), Gaps = 4/186 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYYNSQN  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I  N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   EnlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGW  203
            + ++GW
Sbjct  201  ILVGGW  206

502) spaP in NC_002655


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  101 bits (366),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 77/186 (42%), Positives = 131/186 (71%), Gaps = 4/186 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYYNSQN  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I  N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   EnlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGW  203
            + ++GW
Sbjct  201  ILVGGW  206

503) spaP in NC_002695


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  101 bits (366),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 77/186 (42%), Positives = 131/186 (71%), Gaps = 4/186 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYYNSQN  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I  N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   EnlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGW  203
            + ++GW
Sbjct  201  ILVGGW  206

504) spaP in NC_013008


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  101 bits (366),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 77/186 (42%), Positives = 131/186 (71%), Gaps = 4/186 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYYNSQN  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I  N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   EnlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGW  203
            + ++GW
Sbjct  201  ILVGGW  206

505) spaP in NC_017906


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  101 bits (366),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 77/186 (42%), Positives = 131/186 (71%), Gaps = 4/186 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYYNSQN  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I  N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   EnlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGW  203
            + ++GW
Sbjct  201  ILVGGW  206

506) spaP in NC_010067


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  101 bits (367),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 87/208 (42%), Positives = 152/208 (74%), Gaps = 11/208 (5%)

Query  2    GNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGIALLLSM  61
            G+ I LI ++ + ++LP+++  GT F+K+ IV+ +++NALG+QQ+P+NM++ ++AL+L+M
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  62   FVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEG-LDGYRDYLIKYSDRELVQFFENAQL  120
            F+M P++      +E + + ++D   + + V++G L  YR +L K +    + FFE+A  
Sbjct  69   FIMSPVILKINDNIEKNPINYSD-RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA-  126

Query  121  KRQYGEETEAVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYlylpfvvvdlvvssvl  180
            K++ G++T  +K D       SIF LLPA++L+++ +AFK+GF LYLPF+ +DL++S++L
Sbjct  127  KKKLGNDT-VLKED-------SIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNIL  178

Query  181  lalgmmmmsPVTISTPIKLVLFVALDGW  208
            LALGMMM+SPVTIS P+K++LF+ ++GW
Sbjct  179  LALGMMMVSPVTISIPFKILLFILVGGW  206

507) fliP in NC_009012


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  101 bits (367),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 80/189 (43%), Positives = 137/189 (73%), Gaps = 13/189 (6%)

Query  67   PSILIMMTSFVRIIIVLSFFRNAIGTQQMPPNQVLIGLALFLTLFIMRPVLTEINETAFK  126
            P ++++ TSF++I+IVL++++NA+G QQ+PPN  + ++AL LT+FIM PV+  IN+   K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  127  P---YTNQEITQEVALERSSDIIKRFMLKQTSKNDLGLFVSLS----GMETPIKEEDIPK  179
                Y+++++ Q V  +      + F+ K+T  +D+++F S +    G +T +KE+ I  
Sbjct  85   NPINYSDRDFYQKVE-QGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSI--  141

Query  180  LPLTIVIPAFIISELTIAFKIGFLIYIPFLVIDmvvsstlmsmgmmmlppvmISLPFKIL  239
                I++PAF +++L  AFK+GFL+Y+PF+ ID+++S+ L+++GMMM++PV IS+PFKIL
Sbjct  142  ---FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  240  LFIMVGGWN  248
            LFI+VGGW+
Sbjct  199  LFILVGGWQ  207

508) Clo1313_1739 in NC_017304


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  101 bits (367),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 80/189 (43%), Positives = 137/189 (73%), Gaps = 13/189 (6%)

Query  67   PSILIMMTSFVRIIIVLSFFRNAIGTQQMPPNQVLIGLALFLTLFIMRPVLTEINETAFK  126
            P ++++ TSF++I+IVL++++NA+G QQ+PPN  + ++AL LT+FIM PV+  IN+   K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  127  P---YTNQEITQEVALERSSDIIKRFMLKQTSKNDLGLFVSLS----GMETPIKEEDIPK  179
                Y+++++ Q V  +      + F+ K+T  +D+++F S +    G +T +KE+ I  
Sbjct  85   NPINYSDRDFYQKVE-QGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSI--  141

Query  180  LPLTIVIPAFIISELTIAFKIGFLIYIPFLVIDmvvsstlmsmgmmmlppvmISLPFKIL  239
                I++PAF +++L  AFK+GFL+Y+PF+ ID+++S+ L+++GMMM++PV IS+PFKIL
Sbjct  142  ---FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  240  LFIMVGGWN  248
            LFI+VGGW+
Sbjct  199  LFILVGGWQ  207

509) spaP in NC_009800


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  100 bits (364),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 76/186 (41%), Positives = 130/186 (70%), Gaps = 4/186 (2%)

Query  18   PFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYYNSQN  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I  N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   ENLSFNNLASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKVnssedneeifdddnis  137
            + +++++     +  +  +S Y+ +L K +    ++FFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  ifsLLPAYALSEIKSAFIIGFYIYLPFvvvdlvisivlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS +LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGW  203
            + ++GW
Sbjct  201  ILVGGW  206

510) fliP in NC_017737


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  100 bits (362),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 129/179 (73%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFGFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYENGIKP---YMD  120
            TSF ++++V+G+L+ ALG QQ PP   + S++L+LT FIM P + K  +N  K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPNDVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N    ++ S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

511) fliP in NC_017735


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  100 bits (362),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 129/179 (73%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFGFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYENGIKP---YMD  120
            TSF ++++V+G+L+ ALG QQ PP   + S++L+LT FIM P + K  +N  K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPNDVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N    ++ S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

512) Celf_0690 in NC_015514


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  100 bits (362),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 83/199 (42%), Positives = 144/199 (73%), Gaps = 6/199 (3%)

Query  32   SSSIVVLLAITLLSVAPALILMTTSFTKIFVVLSFTRNALGLQGVPPNQVLAGLALFLSL  91
            + +I++++ + LLSV P ++++ TSF KI +VL++ +NALG+Q VPPN  ++++AL L++
Sbjct  9    GQPILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  92   FVMAPVVSDIN-SVGVQPYLDGSLTFSQAVDVGS-GPLREFMLGQTREQDLALLTRAADQ  149
            F+M+PV+  IN ++  +P   +   F Q V+ G  +P R F+  +T E+D++++  AA +
Sbjct  69   FIMSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKK  128

Query  150  ---ENPASPEDVPFATLVPAFLLSELRSAFIMGFVIFVPFLVIDlvvsaslmsmgmmmlp  206
               ++    ED  F  L+PAF L++L +AF +GF++++PF+ IDL++S  L+++GMMM++
Sbjct  129  KLGNDTVLKEDSIF-ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVS  187

Query  207  pvmISLPFKILLFVLVDGW  225
            PV IS+PFKILLF+LV+GW
Sbjct  188  PVTISIPFKILLFILVGGW  206

513) spaP in NC_017646


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  100 bits (361),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 134/189 (71%), Gaps = 4/189 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYnnsqn  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I +N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   enlsfnnvasvvnfvETGMSGYKSYLRKYSEPELVSFFEKIQKVnssednediidddnis  137
            + +++++     +  +  +S Y+ +L+K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGWTML  206
            + ++GW  +
Sbjct  201  ILVGGWQKI  209

514) fliP in NC_020911


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =  100 bits (361),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 79/193 (41%), Positives = 133/193 (69%), Gaps = 12/193 (6%)

Query  63   VLTILPSFLLGVTAFTRIIIVLSILRQALGTQQTPPNQVLLSIALFLTFYVMAPTF----  118
            +L++LP F++  T+F +I+IVL+IL++ALG QQ PPN  + S+AL LT ++M+P +    
Sbjct  20   LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIN  79

Query  119  EDIYNNAISPYLAGDLPPVAAIEGAAGILSEFLVVNTREAELAMFAEMA----GDEPYAS  174
            ++I +N+I+ Y   D+      +G  +    FL  NT E +++ F   A    G++    
Sbjct  80   DNIEKNPIN-YSDRDFYQKVE-QGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLK  137

Query  175  NEDVPYTVLLPAFITSELKTAFQIGFLLFLPFLVIDLVIAsilmslgmmmlspmlVALPF  234
            ++ +   +LLPAF  ++L +AF++GFLL+LPF+ IDL+I++IL++LGMMM+SP+ +++PF
Sbjct  138  EDSI--FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  235  KLLLFVLVDGWAM  247
            K+LLF+LV+GW  
Sbjct  196  KILLFILVGGWQK  208

515) fliP in NC_012881


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 74/177 (42%), Positives = 130/177 (74%), Gaps = 8/177 (4%)

Query  70   TSFTRIIIVFHFLRQAMGTQQMPPNQILASLAIFMTVVIMMPTGKAINDS-ALQPYLNEE  128
            TSF +I+IV+ +L++A+G QQ+PPN  ++S+A+ +T+ IM P    IND+   +P    +
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  129  IGFSEAIDRAQV-PIRTFLFKHTREKDLSIFYSITGEKRPET----KEDVNTMLLVAAYT  183
             +F + ++++ + P R FL K+T EKD+S F+  ++ K+       KED +  +L++A+T
Sbjct  92   RDFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKED-SIFILLPAFT  149

Query  184  ISELKTGFTIGFLIYVPFLILDMVIASIllamgmmmlppamVSLPFKILLFIMVDGW  240
            +++L ++F +GFL+Y+PF+ +D++I++ILLA+GMMM++P  +S+PFKILLFI+V+GW
Sbjct  150  LGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

516) fliP in NC_009348


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/195 (41%), Positives = 139/195 (72%), Gaps = 9/195 (4%)

Query  52   LSFLPAVVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRIND  111
            LS LP  V++ TSF +I+IVLGIL++A+G+QQ P+N  + ++AL ++ FIMSPV+ +IND
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  112  EALQPYLAETIQAREALEKAEL----PIHQFMLSQTRIKDLNTFMEIADVQVDKPA---E  164
            +  +   +     R+  +K E     P + F+  +T  KD++ F   A  ++++ +   E
Sbjct  81   NIEKN--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKE  138

Query  165  VPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVAsilmamgmmmlspmlvslPFKLM  224
             ++ +L+PAF  ++L +AF++GF+L+LPF+ IDL++++IL+A+GMMM+SP+ +S+PFK++
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  225  LFVMVDGWNLILGSL  239
            LF++V+GW+ I+  L
Sbjct  199  LFILVGGWQKIFEYL  213

517) fliP in NC_021171


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 99.4 bits (358),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 85/206 (42%), Positives = 151/206 (74%), Gaps = 11/206 (5%)

Query  50   ILLITV---LSIAPAILVLMTCFTRIIVVLGFVRNALGTQQIPPNQVLIGLALFMTFFIM  106
            ILLI +   LS+ P ++V+ T F +I++VLG+++NALG QQ+PPN  + ++AL +T FIM
Sbjct  12   ILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIM  71

Query  107  GPTFSQINHDGLEPFMSGKMSQQEAFNAASE----PLKEFMAKQTREKDLALFMDYAGMK  162
            +P + +IN D +E   + + S+++ ++   +    P + F+ K+T EKD+++F   A  K
Sbjct  72   SPVILKIN-DNIEK-NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK  129

Query  163  TPKE--VKDIPINALVPAFAISELKTAFQMGFMIFIPFLVIDmivssvlmsmgmmmlppv  220
              ++  +K+ +I  L+PAF++++L +AF++GF++++PF+ ID+I+S++L+++GMMM++PV
Sbjct  130  LGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPV  189

Query  221  mismpFKILLFIMVDGWNLIIKSLLT  246
             IS+PFKILLFI+V+GW+ I+  LL 
Sbjct  190  TISIPFKILLFILVGGWQKIFEYLLV  215

518) fliP in NC_016112


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 99.4 bits (358),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/197 (41%), Positives = 141/197 (72%), Gaps = 14/197 (7%)

Query  52   MLTVLPSLLLTMTSFTRIMIVLGLLRQALGTAQAPSNQILLGLSLFLTFFIMAPVF----  107
            +L+VLP +++  TSF +I+IVLG+L++ALG  Q P+N  + +++L LT FIM+PV+    
Sbjct  20   LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIN  79

Query  108  DKVNRDAIQPYLEEKIDVLTAVENASV-PFRQFMIRQTRESDLEMFLRIS----GHEEVE  162
            D++++++I+ Y +   D    VE++ + P+R F+ ++T E D+  F   +    G++ V 
Sbjct  80   DNIEKNPIN-YSDR--DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVL  136

Query  163  SVDDVPFSVLLPAYVTSELKTAFQIGFLIFLPFLVIDlvvasvlmsmgmmmlspmIISLP  222
              D + F +LLPA+  ++L +AF++GFL++LPF+ IDL+++++L+++GMMM+SP+ IS+P
Sbjct  137  KEDSI-F-ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIP  194

Query  223  FKIMLFVMADGWSLIME  239
            FKI+LF++ +GW  I E
Sbjct  195  FKILLFILVGGWQKIFE  211

519) fliP in NC_017361


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 99.1 bits (357),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 80/179 (45%), Positives = 128/179 (72%), Gaps = 10/179 (5%)

Query  64   TSFIRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF+++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDDVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     + S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

520) Desaci_3816 in NC_018068


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 99.1 bits (357),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 75/187 (41%), Positives = 133/187 (72%), Gaps = 8/187 (4%)

Query  64   VAPAILLLMTSFTRIVIVLSFVRNALGTQQLPPNQVLVGLALFLSFFVMAPT----WNQI  119
            V P ++++ TSF +IVIVL++++NALG QQ+PPN  + ++AL L+ F+M+P      ++I
Sbjct  23   VLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNI  82

Query  120  NTNAIQPYMKNQITQTEALTKAEEPLRDFMFKQTREKDLELFVGLAK--MERPKTYRDIP  177
            + N+I+ Y   ++ Q         P R F+ K+T EKD+ +F + AK  +      ++ +
Sbjct  83   EKNPIN-YSDRDFYQKVE-QGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  178  TYVLIPAFVISELKTAFQMGFAIFIPFMVIDMIVSSTlmsigmmmlppmmislpFKILLF  237
             ++L+PAF +++L +AF++GF +++PF+ ID+I+S+ L+++GMMM++P+ IS+PFKILLF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  238  VLVDGWH  244
            +LV+GW+
Sbjct  201  ILVGGWQ  207

521) fliP in NC_014810


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =   99 bits (360),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 78/177 (45%), Positives = 129/177 (73%), Gaps = 6/177 (3%)

Query  67   TSFIRLIVVFSFLRTALGTQQTPPTQILVSLALILTFFIMEPTA-KKSYKIAIKPYLAEK  125
            TSF+++++V+++L+ ALG QQ PP   + S+AL+LT FIM P   K + +I  +P     
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  126  ISYTQAFERGVV-PFKEFMLKNTREKDLALFFRI---RNLENPKDVNSVPLSVLVPAFMI  181
              + Q  E+G++ P++ F+ KNT EKD++ FF     ++L N   ++  ++ +L+PAF +
Sbjct  92   RDFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAFTL  150

Query  182  SELKTAFQIGFLLYLPFLVIDMVvssilmamgmmmlppvmiSLPFKILVFILVDGFN  238
            ++L +AF++GFLLYLPF+ ID+++S+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  151  GQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

522) SAR116_0822 in NC_014010


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score =   99 bits (360),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 79/187 (43%), Positives = 130/187 (70%), Gaps = 4/187 (2%)

Query  66   LTVLPSLVLGMTSFTRIIIVLSILRQAMGTQQTPPNQVLVAIALFLTFFIMAPTFTQLND  125
            L+VLP +V+  TSF +I+IVL+IL++A+G QQ PPN  + ++AL LT FIM+P + ++ND
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  126  -MALSPYMEGTMPMETALSDGT-NIMKDFLVQNTRVTDLVMFTEMAGDTTYEDP--KDVP  181
             +  +P   +       + +G  +  + FL +NT   D+  F   A     +D   K+ +
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  182  LTVLLPAFITSELKTAFQIGFLLFLPFLVIDMVIAsilmslgmmmlspmlVALPFKLLLF  241
            + +LLPAF  ++L +AF++GFLL+LPF+ ID++I++IL++LGMMM+SP+ +++PFK+LLF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  242  VLVDGWA  248
            +LV+GW 
Sbjct  201  ILVGGWQ  207

523) fliP in NC_017382


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.9 bits (356),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 128/179 (72%), Gaps = 10/179 (5%)

Query  68   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  124
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  125  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPNEVSLSVLIPAF  180
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N    +E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  181  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  239
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

524) HPOK113_0695 in NC_020508


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.6 bits (355),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 128/179 (72%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPNEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N    +E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

525) fliP in NC_017359


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.6 bits (355),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

526) fliP in NC_017740


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.6 bits (355),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

527) fliP in NC_010698


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.6 bits (355),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

528) fliP in NC_017376


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.6 bits (355),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSTL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

529) fliP in NC_017355


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.6 bits (355),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YVD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

530) fliP in NC_009901


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.6 bits (355),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 81/191 (43%), Positives = 137/191 (72%), Gaps = 14/191 (7%)

Query  49   LSFLPAMLMMLTSFTRIIVVLGILRQALGLQQSPPNKVLIGIALVMTIFIMRPV---GEE  105
            LS LP  +++ TSF +I++VLGIL++ALG+QQ PPN  + ++ALV+T+FIM PV    ++
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  106  IYEKAFLPYDQGIIELPEAVERGE-KPLRQFMLAQTRETDL-----EQMLKIADEPTTLT  159
              EK  + Y +   ++ + VE+G   P R F+  +T E D+         K++++ T L 
Sbjct  81   NIEKNPINYSDR--DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND-TVLK  137

Query  160  AEEIPFFVLMPAYVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlspliislpF  219
             + I  F+L+PA+ L++L +AF++GFLL+LPF+ IDL+++++L+++GMMM+SP+ IS+PF
Sbjct  138  EDSI--FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  220  KLMVFVLVDGW  230
            K+++F+LV+GW
Sbjct  196  KILLFILVGGW  206

531) fliP in NC_021878


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.6 bits (355),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 73/177 (42%), Positives = 128/177 (73%), Gaps = 6/177 (3%)

Query  59   TSFTRLIIVFSLLRQAMGlqqtppsqiiislsliltiFIMEPYAKKAWDD---AIVPYMD  115
            TSF +++IV+++L++A+G+QQ PP+  I S++L+LT+FIM P   K  D+     + Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  116  EKIGYEVAFDKGVAPFKEFMIKNTREADLALFYRI--KKEPNPKNIEAVPLTLLMPAFIV  173
              + Y+   +  ++P++ F+ KNT E D+++F     KK  N   +   ++ +L+PAF +
Sbjct  92   RDF-YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFTL  150

Query  174  SELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIVVDGWQ  230
            ++L +AF +GFL++LPF+ ID+I+++IL++LGMMM++PV IS+P+KI++FI+V+GWQ
Sbjct  151  GQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

532) ABED_0941 in NC_017187


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.6 bits (355),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 73/177 (42%), Positives = 128/177 (73%), Gaps = 6/177 (3%)

Query  59   TSFTRLIIVFSLLRQAMGlqqtppsqiiislsliltiFIMEPYAKKAWDD---AIVPYMD  115
            TSF +++IV+++L++A+G+QQ PP+  I S++L+LT+FIM P   K  D+     + Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  116  EKIGYEVAFDKGVAPFKEFMIKNTREADLALFYRI--KKEPNPKNIEAVPLTLLMPAFIV  173
              + Y+   +  ++P++ F+ KNT E D+++F     KK  N   +   ++ +L+PAF +
Sbjct  92   RDF-YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFTL  150

Query  174  SELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIVVDGWQ  230
            ++L +AF +GFL++LPF+ ID+I+++IL++LGMMM++PV IS+P+KI++FI+V+GWQ
Sbjct  151  GQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

533) fliP in NC_009850


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.6 bits (355),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 73/177 (42%), Positives = 128/177 (73%), Gaps = 6/177 (3%)

Query  59   TSFTRLIIVFSLLRQAMGlqqtppsqiiislsliltiFIMEPYAKKAWDD---AIVPYMD  115
            TSF +++IV+++L++A+G+QQ PP+  I S++L+LT+FIM P   K  D+     + Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  116  EKIGYEVAFDKGVAPFKEFMIKNTREADLALFYRI--KKEPNPKNIEAVPLTLLMPAFIV  173
              + Y+   +  ++P++ F+ KNT E D+++F     KK  N   +   ++ +L+PAF +
Sbjct  92   RDF-YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFTL  150

Query  174  SELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIVVDGWQ  230
            ++L +AF +GFL++LPF+ ID+I+++IL++LGMMM++PV IS+P+KI++FI+V+GWQ
Sbjct  151  GQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

534) fliP in NC_017375


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSTL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

535) fliP in NC_017366


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KTISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

536) K750_05710 in NC_021217


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

537) fliP in NC_017374


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 80/179 (45%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  66   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  122
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  123  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDDVSLSVLIPAF  178
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     + S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  179  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  237
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

538) fliP in NC_017357


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 80/179 (45%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  66   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  122
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  123  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDDVSLSVLIPAF  178
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     + S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  179  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  237
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

539) fliP in NC_006368


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 84/197 (43%), Positives = 142/197 (73%), Gaps = 10/197 (5%)

Query  46   LQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVM  105
            L I+IF  LL+VLP +++  TSF +I+IVL+IL++A+G+ Q P N  + ++AL +T F+M
Sbjct  13   LLIVIFF-LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIM  71

Query  106  SPVFNKINET-AIQPYMNERIDFSLALSNAQ-KPLRQFMLNQTRKNDLSLFE-----KFA  158
            SPV+ KIN+    +P      DF   + ++   P R F+ ++T  +D+S+FE     K++
Sbjct  72   SPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLG  131

Query  159  HNVPKTLDEIPMSVLIPAFITSELKTAFQIGFVLFLPFLIIDlvvssllmamgmmmlspl  218
            ++    L E ++ +L+PAF  ++L +AF++GF+L+LPF+ IDL++S++L+A+GMMM+SP+
Sbjct  132  ND--TVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPV  189

Query  219  IISLPFKIMLFVMVDGW  235
             IS+PFKI+LF++V+GW
Sbjct  190  TISIPFKILLFILVGGW  206

540) Dbac_2731 in NC_013173


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 137/189 (73%), Gaps = 6/189 (3%)

Query  37   MLSMAPAFVLTVTSFTRIIIVFHFLRQAMGTQQMPPNQVLASLAIFMTVVIMMPTGRTIN  96
            +LS+ P FV+  TSF +I+IV+ +L++A+G QQ+PPN  ++S+A+ +T+ IM P    IN
Sbjct  20   LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIN  79

Query  97   DT-ALQPYLNEEIGYGEALERAE-TPLRTFLFKHTREKDLSVFFSITGLERPQNK---DE  151
            D    +P    + ++ + +E++  +P R FL K+T EKD+S FF  ++  +  N     E
Sbjct  80   DNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKE  138

Query  152  VPTMILVPAYLISELKTGFQIGFLIYIPFLILDMVVASIllsmgmmmlppvmvslpFKIL  211
             +  IL+PA+ +++L ++F++GFL+Y+PF+ +D+++++ILL++GMMM++PV +S+PFKIL
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  212  LFVMVDGWN  220
            LF++V+GW+
Sbjct  199  LFILVGGWQ  207

541) fliP in NC_019560


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

542) fliP in NC_012973


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

543) fliP in NC_017358


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

544) fliP in NC_017368


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

545) fliP in NC_017365


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

546) fliP in NC_017367


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

547) fliP in NC_008086


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

548) fliP in NC_017372


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

549) fliP in NC_017362


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

550) HPOK310_0676 in NC_020509


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

551) fliP in NC_017742


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

552) fliP in NC_014555


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

553) fliP in NC_017378


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

554) fliP in NC_017379


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

555) fliP in NC_017741


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

556) fliP in NC_017739


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

557) fliP in NC_017354


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

558) K747_07525 in NC_021215


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

559) K751_03955 in NC_021218


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

560) K748_00620 in NC_021882


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

561) K749_02145 in NC_021216


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

562) fliP in NC_000921


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.3 bits (354),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 80/179 (45%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSTL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDDVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     + S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

563) fliP in NC_019563


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.1 bits (353),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEMSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

564) fliP in NC_017360


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.1 bits (353),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 80/179 (45%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDEVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     E S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKVLVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFK+L+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

565) fliP in NC_017733


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.1 bits (353),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 80/179 (45%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDDVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     + S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

566) fliP in NC_022130


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 98.1 bits (353),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 80/179 (45%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RNLPNPKTPDDVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     + S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

567) fliP in NC_008229


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.8 bits (352),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 81/179 (46%), Positives = 129/179 (73%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPS-LKKAYDIGIKP--YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P  LK   +I  +P  Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRI---RQLPNPKTPDDVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     + S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

568) fliP in NC_017371


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.8 bits (352),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 80/179 (45%), Positives = 127/179 (71%), Gaps = 10/179 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKP---YMD  120
            TSF ++++V+++L+ ALG QQ PP   + S++L+LT FIM P + K  D   K    Y D
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  121  KKISYTEAFEKSAL-PFKKFMLKNTREKDLALFFRI---RNLPNPKTPDDVSLSVLIPAF  176
            +   + +  E++ L P++ F+ KNT EKD++ FF     ++L N     + S+ +L+PAF
Sbjct  92   R--DFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAF  148

Query  177  MISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
             +++L +AF++GFLLYLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+FILV+G +
Sbjct  149  TLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

569) spaP in NC_011741


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.5 bits (351),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 133/189 (71%), Gaps = 4/189 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYnnsqn  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I +N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   enlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGWTML  206
            + ++GW  +
Sbjct  201  ILVGGWQKI  209

570) spaP in NC_017660


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.5 bits (351),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 133/189 (71%), Gaps = 4/189 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYnnsqn  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I +N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   enlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGWTML  206
            + ++GW  +
Sbjct  201  ILVGGWQKI  209

571) EKO11_0869 in NC_016902


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.5 bits (351),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 133/189 (71%), Gaps = 4/189 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYnnsqn  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I +N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   enlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGWTML  206
            + ++GW  +
Sbjct  201  ILVGGWQKI  209

572) LY180_14720 in NC_022364


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.5 bits (351),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 133/189 (71%), Gaps = 4/189 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYnnsqn  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I +N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   enlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGWTML  206
            + ++GW  +
Sbjct  201  ILVGGWQKI  209

573) ECO103_3430 in NC_013353


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.5 bits (351),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 133/189 (71%), Gaps = 4/189 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYnnsqn  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I +N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   enlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGWTML  206
            + ++GW  +
Sbjct  201  ILVGGWQKI  209

574) ECO111_3598 in NC_013364


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.5 bits (351),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 133/189 (71%), Gaps = 4/189 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYnnsqn  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I +N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   enlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGWTML  206
            + ++GW  +
Sbjct  201  ILVGGWQKI  209

575) spaP in NC_013361


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.5 bits (351),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 133/189 (71%), Gaps = 4/189 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYnnsqn  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I +N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   enlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGWTML  206
            + ++GW  +
Sbjct  201  ILVGGWQKI  209

576) spaP in NC_011415


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.5 bits (351),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 133/189 (71%), Gaps = 4/189 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYnnsqn  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I +N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   enlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGWTML  206
            + ++GW  +
Sbjct  201  ILVGGWQKI  209

577) spaP in NC_011751


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.5 bits (351),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 133/189 (71%), Gaps = 4/189 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYnnsqn  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I +N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   enlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGWTML  206
            + ++GW  +
Sbjct  201  ILVGGWQKI  209

578) epaP in NC_017635


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.5 bits (351),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 133/189 (71%), Gaps = 4/189 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYnnsqn  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I +N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   enlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGWTML  206
            + ++GW  +
Sbjct  201  ILVGGWQKI  209

579) spaP in NC_017664


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.5 bits (351),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 77/189 (41%), Positives = 133/189 (71%), Gaps = 4/189 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYnnsqn  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I +N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   enlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGWTML  206
            + ++GW  +
Sbjct  201  ILVGGWQKI  209

580) fliP in NC_010520


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.5 bits (351),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 82/195 (43%), Positives = 140/195 (72%), Gaps = 17/195 (8%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVY----SEINT  124
            P F+V+ TSF++ ++V+G+L+NA+G QQ PPN  + ++AL LT+FIM PV      +I+ 
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  125  KAIQPYMKNKITQEQAVETGA-KPLRQFMLKQTRQKDLKLFVDLAKPNF---KVTKDNAP  180
            ++I+ Y    + Q   VE G   P R F+ K+T +KD+ +F   AK ++    V K+++ 
Sbjct  85   NPIN-YSDRDFYQK--VEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS-  140

Query  181  LYIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLF  240
            ++I++PAF +++L +AF++GFLL++PF+ IDL+++++L+++GM M++PV IS+PFK+LLF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  241  VMVDGW-----YLLV  250
            ++V+GW     YLLV
Sbjct  201  ILVGGWQKIFEYLLV  215

581) fliP in NC_010516


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.3 bits (350),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 138/194 (72%), Gaps = 15/194 (7%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVY----SEINT  124
            P F+V+ TSF++ ++V+G+L+NA+G QQ PPN  + ++AL LT+FIM PV      +I+ 
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  125  KAIQPYMKNKINQEQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKPNF---KVTKDNAPL  181
            ++I+ Y    + Q     I   P R F+ K+T +KD+ +F   AK ++    V K+++ +
Sbjct  85   NPIN-YSDRDFYQKVEQGI-LSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS-I  141

Query  182  YIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFV  241
            +I++PAF +++L +AF++GFLL++PF+ IDL+++++L+++GM M++PV IS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  242  MVDGW-----YLLV  250
            +V+GW     YLLV
Sbjct  202  LVGGWQKIFEYLLV  215

582) epaP in NC_017626


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.3 bits (350),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 76/189 (41%), Positives = 133/189 (71%), Gaps = 4/189 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGIALLLSMFVMMPVGKEIYnnsqn  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ ++AL+L+MF+M PV   I +N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   enlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiiddenis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGWTML  206
            + ++GW  +
Sbjct  201  ILVGGWQKI  209

583) spaP in NC_011748


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.3 bits (350),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 75/183 (41%), Positives = 127/183 (70%), Gaps = 4/183 (2%)

Query  24   GTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGTEIYYNSQNEnlsfn  83
            GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I  N +++ ++++
Sbjct  31   GTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYS  90

Query  84   nvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnisiFSLLP  143
            +     +  +  +S Y+ +L K +    +SFFE   K        +     + SIF LLP
Sbjct  91   DRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDSIFILLP  146

Query  144  AYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVIISTPIKLILFVAMDGW  203
            A++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPV IS P+K++LF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  204  TML  206
              +
Sbjct  207  QKI  209

584) spaP in NC_020163


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.3 bits (350),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 75/183 (41%), Positives = 127/183 (70%), Gaps = 4/183 (2%)

Query  24   GTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGTEIYYNSQNEnlsfn  83
            GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I  N +++ ++++
Sbjct  31   GTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYS  90

Query  84   nvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnisiFSLLP  143
            +     +  +  +S Y+ +L K +    +SFFE   K        +     + SIF LLP
Sbjct  91   DRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDSIFILLP  146

Query  144  AYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVIISTPIKLILFVAMDGW  203
            A++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPV IS P+K++LF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  204  TML  206
              +
Sbjct  207  QKI  209

585) spaP in NC_018650


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.3 bits (350),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 75/183 (41%), Positives = 127/183 (70%), Gaps = 4/183 (2%)

Query  24   GTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGTEIYYNSQNEnlsfn  83
            GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I  N +++ ++++
Sbjct  31   GTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYS  90

Query  84   nvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnisiFSLLP  143
            +     +  +  +S Y+ +L K +    +SFFE   K        +     + SIF LLP
Sbjct  91   DRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDSIFILLP  146

Query  144  AYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVIISTPIKLILFVAMDGW  203
            A++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPV IS P+K++LF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  204  TML  206
              +
Sbjct  207  QKI  209

586) spaP in NC_018661


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.3 bits (350),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 75/183 (41%), Positives = 127/183 (70%), Gaps = 4/183 (2%)

Query  24   GTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGTEIYYNSQNEnlsfn  83
            GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I  N +++ ++++
Sbjct  31   GTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYS  90

Query  84   nvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnisiFSLLP  143
            +     +  +  +S Y+ +L K +    +SFFE   K        +     + SIF LLP
Sbjct  91   DRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDSIFILLP  146

Query  144  AYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVIISTPIKLILFVAMDGW  203
            A++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPV IS P+K++LF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  204  TML  206
              +
Sbjct  207  QKI  209

587) spaP in NC_018658


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.3 bits (350),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 75/183 (41%), Positives = 127/183 (70%), Gaps = 4/183 (2%)

Query  24   GTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGTEIYYNSQNEnlsfn  83
            GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I  N +++ ++++
Sbjct  31   GTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYS  90

Query  84   nvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnisiFSLLP  143
            +     +  +  +S Y+ +L K +    +SFFE   K        +     + SIF LLP
Sbjct  91   DRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDSIFILLP  146

Query  144  AYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVIISTPIKLILFVAMDGW  203
            A++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPV IS P+K++LF+ ++GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  204  TML  206
              +
Sbjct  207  QKI  209

588) spaP in NC_009801


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.0 bits (349),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 76/189 (41%), Positives = 133/189 (71%), Gaps = 4/189 (2%)

Query  18   PFIIASGTCFIKFSIVFVIVRKALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYnnsqn  77
            P+++  GT F+K+ IV+ I+++ALG+QQVP+NM++ +VAL+L+MF+M PV   I +N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   enlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVSFFEKIQKVnssedneeiidddnis  137
            + +++++     +  +  +S Y+ +L K +    +SFFE   K        +     + S
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  iFSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGWTML  206
            + ++GW  +
Sbjct  201  ILVGGWQKI  209

589) H04402_02743 in NC_017299


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 97.0 bits (349),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 138/194 (72%), Gaps = 15/194 (7%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVY----SEINT  124
            P F+V+ TSF++ ++V+G+L+NA+G QQ PPN  + ++AL LT+FIM PV      +I+ 
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  125  KAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKPNF---KVTKDNAPL  181
            ++I+ Y    + Q     I   P R F+ K+T +KD+ +F   AK ++    V K+++ +
Sbjct  85   NPIN-YSDRDFYQKVEQGI-LSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS-I  141

Query  182  YIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFV  241
            +I++PAF +++L +AF++GFLL++PF+ IDL+++++L+++GM M++PV IS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  242  MVDGW-----YLLV  250
            +V+GW     YLLV
Sbjct  202  LVGGWQKIFEYLLV  215

590) fliP in NC_010334


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 96.8 bits (348),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 80/189 (43%), Positives = 138/189 (74%), Gaps = 10/189 (5%)

Query  49   LSFLPALLMMLTSFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMRPVGQEIYD  108
            LS LP ++++ TSF +I++VL+IL++ALG+QQ PPN  + ++ALV+T+FIM PV   I D
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  109  D-AFLPYDMGQIELPEAVARGEV-PLRQFMLAQTRETDL-----EQMLKIADEPITLTAD  161
            +    P + ++ ++ + V +G + P R F+  +T E D+         K++++ + L  D
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV-LKED  139

Query  162  EIPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlspliislpFKL  221
             I  F+L+PAF L++L +AF++GFLL+LPF+ IDL+++++L+++GMMM+SP+ IS+PFK+
Sbjct  140  SI--FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  222  MVFVLVDGW  230
            ++F+LV+GW
Sbjct  198  LLFILVGGW  206

591) fliP in NC_012563


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 96.8 bits (348),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 138/194 (72%), Gaps = 15/194 (7%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVY----SEINT  124
            P F+V+ TSF++ ++V+G+L+NA+G QQ PPN  + ++AL LT+FIM PV      +I+ 
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  125  KAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPNF---KVTKDNAPL  181
            ++I+ Y    + Q     I   P R F+ K+T +KD+ +F   AK ++    V K+++ +
Sbjct  85   NPIN-YSDRDFYQKVEQGI-LSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS-I  141

Query  182  YIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFV  241
            +I++PAF +++L +AF++GFLL++PF+ IDL+++++L+++GM M++PV IS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  242  MVDGW-----YLLV  250
            +V+GW     YLLV
Sbjct  202  LVGGWQKIFEYLLV  215

592) fliP in NC_009697


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 96.8 bits (348),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 138/194 (72%), Gaps = 15/194 (7%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVY----SEINT  124
            P F+V+ TSF++ ++V+G+L+NA+G QQ PPN  + ++AL LT+FIM PV      +I+ 
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  125  KAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPNF---KVTKDNAPL  181
            ++I+ Y    + Q     I   P R F+ K+T +KD+ +F   AK ++    V K+++ +
Sbjct  85   NPIN-YSDRDFYQKVEQGI-LSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS-I  141

Query  182  YIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFV  241
            +I++PAF +++L +AF++GFLL++PF+ IDL+++++L+++GM M++PV IS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  242  MVDGW-----YLLV  250
            +V+GW     YLLV
Sbjct  202  LVGGWQKIFEYLLV  215

593) fliP in NC_009495


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 96.8 bits (348),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 138/194 (72%), Gaps = 15/194 (7%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVY----SEINT  124
            P F+V+ TSF++ ++V+G+L+NA+G QQ PPN  + ++AL LT+FIM PV      +I+ 
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  125  KAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPNF---KVTKDNAPL  181
            ++I+ Y    + Q     I   P R F+ K+T +KD+ +F   AK ++    V K+++ +
Sbjct  85   NPIN-YSDRDFYQKVEQGI-LSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS-I  141

Query  182  YIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFV  241
            +I++PAF +++L +AF++GFLL++PF+ IDL+++++L+++GM M++PV IS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  242  MVDGW-----YLLV  250
            +V+GW     YLLV
Sbjct  202  LVGGWQKIFEYLLV  215

594) fliP in NC_009698


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 96.8 bits (348),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 138/194 (72%), Gaps = 15/194 (7%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVY----SEINT  124
            P F+V+ TSF++ ++V+G+L+NA+G QQ PPN  + ++AL LT+FIM PV      +I+ 
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  125  KAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPNF---KVTKDNAPL  181
            ++I+ Y    + Q     I   P R F+ K+T +KD+ +F   AK ++    V K+++ +
Sbjct  85   NPIN-YSDRDFYQKVEQGI-LSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS-I  141

Query  182  YIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFV  241
            +I++PAF +++L +AF++GFLL++PF+ IDL+++++L+++GM M++PV IS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  242  MVDGW-----YLLV  250
            +V+GW     YLLV
Sbjct  202  LVGGWQKIFEYLLV  215

595) fliP in NC_012658


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 96.8 bits (348),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 138/194 (72%), Gaps = 15/194 (7%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVY----SEINT  124
            P F+V+ TSF++ ++V+G+L+NA+G QQ PPN  + ++AL LT+FIM PV      +I+ 
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  125  KAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKPNF---KVTKDNAPL  181
            ++I+ Y    + Q     I   P R F+ K+T +KD+ +F   AK ++    V K+++ +
Sbjct  85   NPIN-YSDRDFYQKVEQGI-LSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS-I  141

Query  182  YIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFV  241
            +I++PAF +++L +AF++GFLL++PF+ IDL+++++L+++GM M++PV IS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  242  MVDGW-----YLLV  250
            +V+GW     YLLV
Sbjct  202  LVGGWQKIFEYLLV  215

596) BN341_p1310 in NC_019674


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 95.7 bits (344),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 79/179 (45%), Positives = 126/179 (71%), Gaps = 14/179 (7%)

Query  65   TSFIRLIVVFSFLRTALGTQQTPPTQILVSLALILTFFIMEPAAKKSYDTAIKPYLAEKI  124
            TSF+++++V+++L+ ALG QQ PP   + S+AL+LT FIM P   K  D   K    + I
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK----NPI  87

Query  125  SYTE-AF----EVGIV-PFKEFMLQNTREKDLALFFRI---RHLENPKTPSAVPLTVLVP  175
            +Y++  F    E GI+ P++ F+ +NT EKD++ FF     + L N       ++ +L+P
Sbjct  88   NYSDRDFYQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLP  146

Query  176  AFMISELKTGFQIGFLLYLPFLVIDMVvssilmamgmmmlppvmiSLPFKILVFILVDG  234
            AF +++L ++F++GFLLYLPF+ ID+++S+IL+A+GMMM++PV IS+PFKIL+FILV+G
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

597) spaP in NC_010468


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 95.4 bits (343),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 75/186 (41%), Positives = 131/186 (71%), Gaps = 4/186 (2%)

Query  18   PFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYYNSQN  77
            P+++  GT F+K+ IV+ I++NALG+QQVP+NM++ +VAL+L+MF+M PV   I  N ++
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  78   EnlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVNFFEKIQKVnssedneeifdddnip  137
            + +++++     +  +  +S Y+ +L K +    ++FFE   K        +     + +
Sbjct  85   NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK----KKLGNDTVLKEDS  140

Query  138  ifSLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKLILF  197
            IF LLPA++L+++ +AF +GF +YLPF+ +DL+IS++LL+LGMMM+SPVTIS P+K++LF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  198  VAMDGW  203
            + ++GW
Sbjct  201  ILVGGW  206

598) Hipma_0871 in NC_015318


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 95.2 bits (342),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 135/187 (73%), Gaps = 12/187 (6%)

Query  59   PSILIMMTSFTRIIIVLAILRQALGTQQMPPNQILIGIALFLTLFIMSPQINTIYKTAYL  118
            P ++++ TSF +I+IVL+IL++ALG QQ+PPN  + ++AL LT+FIMSP I  I      
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDN---  81

Query  119  PLQKNEITLEGA--YKNATK----PLKTFMLKQTRQKDLALFLRIAKKPNPKNP--QELS  170
             ++KN I   +   Y++  +    P + F+ K+T +KD+++F   AKK   ++   +E S
Sbjct  82   -IEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  171  MDIVIPAFIISELKTAFEMGFIIYIPFLIIDMVVssilmsmgmmmlppimislpFKLLIF  230
            + I++PAF +++L +AF +GF++Y+PF+ ID+++S+IL+++GMMM++P+ IS+PFK+L+F
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  231  VLADGWN  237
            +L +GW+
Sbjct  201  ILVGGWQ  207

599) fliP in NC_009494


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 95.2 bits (342),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 85/199 (43%), Positives = 145/199 (73%), Gaps = 14/199 (7%)

Query  46   LQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVM  105
            L I+IF  LL+VLP +++  TSF +I+IVL+IL++A+G+ Q P N  + ++AL +T F+M
Sbjct  13   LLIVIFF-LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIM  71

Query  106  SPVFNKINETAIQP---YMNERIDFSLALSNAQ-KPLRQFMLNQTRKNDLSLFE-----K  156
            SPV+ KIN+   +    Y ++R DF   + ++   P R F+ ++T  +D+S+FE     K
Sbjct  72   SPVILKINDNIEKNPINY-SDR-DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK  129

Query  157  FAHNVPKSLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlVVSSVLMAMGMMMLS  216
            ++++    L E ++ +L+PAF  ++L +AF++GF+L+LPF+ IDL++S++L+A+GMMM+S
Sbjct  130  LGND--TVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVS  187

Query  217  PLIISLPFKIMLFVMVDGW  235
            P+ IS+PFKI+LF++V+GW
Sbjct  188  PVTISIPFKILLFILVGGW  206

600) fliP in NC_017297


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 95.2 bits (342),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 138/194 (72%), Gaps = 15/194 (7%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMYPVY----SEVNT  124
            P F+V+ TSF++ ++V+G+L+NA+G QQ PPN  + ++AL LT+FIM PV      +++ 
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  125  KAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKPNF---KVTKDNAPL  181
            ++I+ Y    + Q     I   P R F+ K+T +KD+ +F   AK ++    V K+++ +
Sbjct  85   NPIN-YSDRDFYQKVEQGI-LSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS-I  141

Query  182  YIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFV  241
            +I++PAF +++L +AF++GFLL++PF+ IDL+++++L+++GM M++PV IS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  242  MVDGW-----YLLV  250
            +V+GW     YLLV
Sbjct  202  LVGGWQKIFEYLLV  215

601) fliP in NC_009699


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 95.2 bits (342),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 138/194 (72%), Gaps = 15/194 (7%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMYPVY----SEVNT  124
            P F+V+ TSF++ ++V+G+L+NA+G QQ PPN  + ++AL LT+FIM PV      +++ 
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  125  KAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKPNF---KVTKDNAPL  181
            ++I+ Y    + Q     I   P R F+ K+T +KD+ +F   AK ++    V K+++ +
Sbjct  85   NPIN-YSDRDFYQKVEQGI-LSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS-I  141

Query  182  YIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLLFV  241
            +I++PAF +++L +AF++GFLL++PF+ IDL+++++L+++GM M++PV IS+PFK+LLF+
Sbjct  142  FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFI  201

Query  242  MVDGW-----YLLV  250
            +V+GW     YLLV
Sbjct  202  LVGGWQKIFEYLLV  215

602) Fbal_2331 in NC_014541


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 94.9 bits (341),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 78/189 (42%), Positives = 133/189 (71%), Gaps = 10/189 (5%)

Query  48   LSFLPAMLLMMTSFTRIIVVLAVLRQALGLQQSPPNKLLIGIALVLTLFIMRPVWTEIH-  106
            LS LP  +++ TSF +I++VL++L++ALG+QQ PPN  + ++ALVLT+FIM PV   I+ 
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  107  --EQAFLPYDNGELTLKQAVAVAEVPLRTFMLGQTRETDL----EQMLKIAGESTQLSAE  160
              E+  + Y + ++  K   ++   P R F+  +T E D+        K  G+ T L  +
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILS-PYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKED  139

Query  161  EVPFSVLMPAFVLSELKTAFQIGFLLFIPFLVIDlvvasvlmsmgmmmlspliislpFKL  220
             + F +L+PAF L++L +AF++GFLL++PF+ IDL+++++L+++GMMM+SP+ IS+PFK+
Sbjct  140  SI-F-ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  221  MVFVLVDGW  229
            ++F+LV+GW
Sbjct  198  LLFILVGGW  206

603) fliP in NC_014125


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 94.9 bits (341),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 85/199 (43%), Positives = 145/199 (73%), Gaps = 14/199 (7%)

Query  46   LQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVM  105
            L I+IF  LL+VLP +++  TSF +I+IVL+IL++A+G+ Q P N  + ++AL +T F+M
Sbjct  13   LLIVIFF-LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIM  71

Query  106  SPVFNKINETAIQP---YMNERIDFSLALSNAQ-KPLRQFMLNQTRKNDLSLFE-----K  156
            SPV+ KIN+   +    Y ++R DF   + ++   P R F+ ++T  +D+S+FE     K
Sbjct  72   SPVILKINDNIEKNPINY-SDR-DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK  129

Query  157  FAHNVPKSLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlVVSSVLMAMGMMMLS  216
            ++++    L E ++ +L+PAF  ++L +AF++GF+L+LPF+ IDL++S++L+A+GMMM+S
Sbjct  130  LGND--TVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVS  187

Query  217  PLIISLPFKIMLFVMVDGW  235
            P+ IS+PFKI+LF++V+GW
Sbjct  188  PVTISIPFKILLFILVGGW  206

604) lp12_1727 in NC_016811


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 94.9 bits (341),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 85/199 (43%), Positives = 145/199 (73%), Gaps = 14/199 (7%)

Query  46   LQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVM  105
            L I+IF  LL+VLP +++  TSF +I+IVL+IL++A+G+ Q P N  + ++AL +T F+M
Sbjct  13   LLIVIFF-LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIM  71

Query  106  SPVFNKINETAIQP---YMNERIDFSLALSNAQ-KPLRQFMLNQTRKNDLSLFE-----K  156
            SPV+ KIN+   +    Y ++R DF   + ++   P R F+ ++T  +D+S+FE     K
Sbjct  72   SPVILKINDNIEKNPINY-SDR-DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK  129

Query  157  FAHNVPKSLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlVVSSVLMAMGMMMLS  216
            ++++    L E ++ +L+PAF  ++L +AF++GF+L+LPF+ IDL++S++L+A+GMMM+S
Sbjct  130  LGND--TVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVS  187

Query  217  PLIISLPFKIMLFVMVDGW  235
            P+ IS+PFKI+LF++V+GW
Sbjct  188  PVTISIPFKILLFILVGGW  206

605) LPE509_01400 in NC_020521


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 94.9 bits (341),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 85/199 (43%), Positives = 145/199 (73%), Gaps = 14/199 (7%)

Query  46   LQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVM  105
            L I+IF  LL+VLP +++  TSF +I+IVL+IL++A+G+ Q P N  + ++AL +T F+M
Sbjct  13   LLIVIFF-LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIM  71

Query  106  SPVFNKINETAIQP---YMNERIDFSLALSNAQ-KPLRQFMLNQTRKNDLSLFE-----K  156
            SPV+ KIN+   +    Y ++R DF   + ++   P R F+ ++T  +D+S+FE     K
Sbjct  72   SPVILKINDNIEKNPINY-SDR-DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK  129

Query  157  FAHNVPKSLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlVVSSVLMAMGMMMLS  216
            ++++    L E ++ +L+PAF  ++L +AF++GF+L+LPF+ IDL++S++L+A+GMMM+S
Sbjct  130  LGND--TVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVS  187

Query  217  PLIISLPFKIMLFVMVDGW  235
            P+ IS+PFKI+LF++V+GW
Sbjct  188  PVTISIPFKILLFILVGGW  206

606) fliP in NC_002942


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 94.9 bits (341),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 85/199 (43%), Positives = 145/199 (73%), Gaps = 14/199 (7%)

Query  46   LQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVM  105
            L I+IF  LL+VLP +++  TSF +I+IVL+IL++A+G+ Q P N  + ++AL +T F+M
Sbjct  13   LLIVIFF-LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIM  71

Query  106  SPVFNKINETAIQP---YMNERIDFSLALSNAQ-KPLRQFMLNQTRKNDLSLFE-----K  156
            SPV+ KIN+   +    Y ++R DF   + ++   P R F+ ++T  +D+S+FE     K
Sbjct  72   SPVILKINDNIEKNPINY-SDR-DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK  129

Query  157  FAHNVPKSLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlVVSSVLMAMGMMMLS  216
            ++++    L E ++ +L+PAF  ++L +AF++GF+L+LPF+ IDL++S++L+A+GMMM+S
Sbjct  130  LGND--TVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVS  187

Query  217  PLIISLPFKIMLFVMVDGW  235
            P+ IS+PFKI+LF++V+GW
Sbjct  188  PVTISIPFKILLFILVGGW  206

607) fliP in NC_021350


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 94.9 bits (341),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 85/199 (43%), Positives = 145/199 (73%), Gaps = 14/199 (7%)

Query  46   LQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVM  105
            L I+IF  LL+VLP +++  TSF +I+IVL+IL++A+G+ Q P N  + ++AL +T F+M
Sbjct  13   LLIVIFF-LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIM  71

Query  106  SPVFNKINETAIQP---YMNERIDFSLALSNAQ-KPLRQFMLNQTRKNDLSLFE-----K  156
            SPV+ KIN+   +    Y ++R DF   + ++   P R F+ ++T  +D+S+FE     K
Sbjct  72   SPVILKINDNIEKNPINY-SDR-DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK  129

Query  157  FAHNVPKSLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlVVSSVLMAMGMMMLS  216
            ++++    L E ++ +L+PAF  ++L +AF++GF+L+LPF+ IDL++S++L+A+GMMM+S
Sbjct  130  LGND--TVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVS  187

Query  217  PLIISLPFKIMLFVMVDGW  235
            P+ IS+PFKI+LF++V+GW
Sbjct  188  PVTISIPFKILLFILVGGW  206

608) fliP in NC_011963


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 94.4 bits (339),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 78/186 (42%), Positives = 130/186 (70%), Gaps = 4/186 (2%)

Query  54   LTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVMQPTLGALYE  113
            L+VLP +V+  ++F +I+IVL+IL++ALG QQ PPN  + ++AL LT F+M P +  + +
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  114  Q-SLSPFLDGQIEAQPAIERGG-AIMKDFLIANTRQNDLLMFSDLAGA--GPYAEPTEVP  169
            +   +P+  ++ +    +E+G  +  + FL  NT ++D+  F   A    G  +   E +
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  170  FSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMAlgmmmlspmlvslpFKLLLF  229
            +  LLPAF  ++L +AF++GFLL+LPF+ ID++I++IL+ALGMMM+SP+ +S+PFK+LLF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  230  VLVDGW  235
            +LV+GW
Sbjct  201  ILVGGW  206

609) swp_5086 in NC_011566


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 93.9 bits (337),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 80/189 (43%), Positives = 138/189 (74%), Gaps = 10/189 (5%)

Query  49   LSFLPALLMMLTSFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMRPVGQAIYD  108
            LS LP ++++ TSF +I++VL+IL++ALG+QQ PPN  + ++ALV+T+FIM PV   I D
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  109  E-AFLPYDLGQIELTEAVVKAEV-PLRKFMLAQTRETDL-----EQMLKIADEPTTLTAD  161
            +    P + ++ ++ + V ++ + P R F+  +T E D+         K++++ T L  D
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGND-TVLKED  139

Query  162  EIPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlspliislpFKL  221
             I  F+L+PAF L++L +AF++GFLL+LPF+ IDL+++++L+++GMMM+SP+ IS+PFK+
Sbjct  140  SI--FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKI  197

Query  222  MVFVLVDGW  230
            ++F+LV+GW
Sbjct  198  LLFILVGGW  206

610) fliP in NC_009831


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 93.9 bits (337),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 138/191 (73%), Gaps = 14/191 (7%)

Query  49   LSFLPALLMMLTSFTRIIVVLAILRQALGLQQSPPNKVLLGIALVLTLFVMRPVGQVMYD  108
            LS LP ++++ TSF +I++VL+IL++ALG+QQ PPN  + ++ALVLT+F+M PV   + D
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  109  E---AYLPYDQGLIELPEAVNIGVV-PLRKFMLAQTRETDL-----EQMLKIADEPVTLT  159
            +     + Y +   ++ + V+ G++ P R F+  +T E D+         K++++ V L 
Sbjct  81   NIEKNPINYSDR--DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTV-LK  137

Query  160  ADEIPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlspliislpF  219
             D I  F+L+PAF L++L +AF++GFLL+LPF+ IDL+++++L+++GMMM+SP+ IS+PF
Sbjct  138  EDSI--FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  220  KLMVFVLVDGW  230
            K+++F+LV+GW
Sbjct  196  KILLFILVGGW  206

611) fliP in NC_009428


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 92.0 bits (330),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 77/187 (42%), Positives = 128/187 (69%), Gaps = 4/187 (2%)

Query  51   LTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVMQPTLGTLYA  110
            L+VLP +V+  ++F +I+IVL+IL++ALG QQ PPN  + ++AL LT F+M P +  +  
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  111  E-ALSPFLDGRLAAEPAIERGG-AIMKEFLIANTRQNDLLMFSDLAGAGPYEDP--RDVP  166
            +   +P+  +       +E+G  +  + FL  NT ++D+  F   A     +D   ++ +
Sbjct  81   NIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDS  140

Query  167  FSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMAlgmmmlspmlvslpFKLLLF  226
            +  LLPAF  ++L +AF++GFLL+LPF+ ID++I++IL+ALGMMM+SP+ +S+PFK+LLF
Sbjct  141  IFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLF  200

Query  227  VLVDGWA  233
            +LV+GW 
Sbjct  201  ILVGGWQ  207

612) fliP in NC_020909


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 91.8 bits (329),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 76/189 (41%), Positives = 128/189 (68%), Gaps = 8/189 (4%)

Query  33   ITILPSILLGLTAFTRIIIVLSILRQAMGTQQTPPNQVLISIALFLTFYVMAP---TFED  89
            +++LP +++  T+F +I+IVL+IL++A+G QQ PPN  + S+AL LT ++M+P    ++D
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  90   IYRNAALPYLEGsvsavsaissaaDTLREFLILNTREAELSMFAEMAGDEPYATN---KD  146
               + ++ Y  +         +     R FL  NT E ++S F E A+    + +   K+
Sbjct  81   NIEKNPINY-SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFF-ESAAKKKLGNDTVLKE  138

Query  147  VPYPVLLPAFITSELKTAFQIGFLLFLPFLVIDLVIAsilmslgmmmlspmlvslPFKLL  206
             +  +LLPAF  ++L +AF++GFLL+LPF+ IDL+I++IL++LGMMM+SP+ +S+PFK+L
Sbjct  139  DSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKIL  198

Query  207  LFVLVDGWA  215
            LF+LV+GW 
Sbjct  199  LFILVGGWQ  207

613) fliP in NC_007954


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 89.1 bits (319),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 80/191 (42%), Positives = 133/191 (70%), Gaps = 14/191 (7%)

Query  50   LSFLPAMLMMLTSFTRIVVVLAILRQALGLQQSPPNKVLIGIALVLTLFIMRPV----GD  105
            LS LP  +++ TSF +IV+VL+IL++ALG+QQ PPN  + ++ALVLT+FIM PV     D
Sbjct  21   LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKIND  80

Query  106  SIYKEAYLPYDQGKIELMAAIDIAKVPLSQFMLAQTRETDL-----EQMLKIANEPIDLT  160
            +I K++ + Y +  +      +I   P   F+  +T E D+         K++N+ + L 
Sbjct  81   NIEKNP-INYSDRDFYQKVEQGILS-PYRVFLKKNTLEKDISFFESAAKKKLGNDTV-LK  137

Query  161  PAEIPFLVLMPAFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlspliislpF  220
               I  ++L+PAF L++L +AF++GFLL+LPF+ IDL+++++L+++GMMM+SP+ IS+PF
Sbjct  138  EDSI--FILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPF  195

Query  221  KLMIFVLVDGW  231
            K+++F+LV+GW
Sbjct  196  KILLFILVGGW  206

614) fliP in NC_005090


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 88.9 bits (318),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 71/175 (41%), Positives = 128/175 (74%), Gaps = 6/175 (3%)

Query  65   TSFTRLIIVFSFLRTAMGTQQSPPTQLLVSLAMVLTFFIMEPIA-KQSYEIGIKP--YLA  121
            TSF +++IV+++L+ A+G QQ PP   + S+A+VLT FIM P+  K + +I  +P  Y  
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  122  KEIPYDVAFVKSVGPFKEFMIRNTREKDLALFYRI--RGMENPQTIEDIPLTMVIPAFMI  179
            +++ Y+      ++P++ F+ +NT EKD+++F     + + N   + + ++ +++PAF +
Sbjct  92   RDF-YQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFTL  150

Query  180  SEMKTAFQIGFLIYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFVLVDG  234
            +++ +AF++GFL+YLPF+ ID++IS+IL+A+GMMM++PV IS+PFKIL+F+LV+G
Sbjct  151  GQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGG  205

615) fliP in NC_022444


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 87.3 bits (312),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 141/199 (71%), Gaps = 19/199 (9%)

Query  47   ILFLLTVLSLAPAIVMTMTSFTRIIIVFSFVRQALGTQQLPPTQVLSSLAIFMTVIIMMP  106
            I+FLL+VL   P +V+  TSF +I+IV++++++ALG QQ+PP   ++S+A+ +T++IM P
Sbjct  17   IFFLLSVL---PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSP  73

Query  107  TGKVINDNALQPYLDERIGF--REALTRAEQ----PLREFLFKHTREQDLAIFYSIAKID  160
                INDN  +    + I +  R+   + EQ    P R FL K+T E+D+++F S AK  
Sbjct  74   VILKINDNIEK----NPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAK--  127

Query  161  RPQNKETV----PTMLLAAAFIISEIKTGFIIGFLIYIPFLILDMVVSSIllamgmmmlp  216
            +   ++TV    +  +L +AF ++++ ++F +GFL+Y+PF+ +D+++S+ILLA+GMMM++
Sbjct  128  KKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVS  187

Query  217  pvmvsmpFKLLLFVMIDGW  235
            PV +S+PFK+LLF++++GW
Sbjct  188  PVTISIPFKILLFILVGGW  206

616) fliP in NC_008599


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 87.3 bits (312),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 72/177 (41%), Positives = 125/177 (71%), Gaps = 6/177 (3%)

Query  62   TSFLRLIIVFSFLRQAMGTQQMPPTNVLISLALILTFFIMEPVA---KQSYNEGIKPYLE  118
            TSFL+++IV+++L++A+G QQ+PP   + S+AL+LT FIM PV    +++ +     Y  
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINY-S  90

Query  119  EKIGYQDAFALGAKPFKEFMVRNTREKDLALFYRI--RALPNPNTVDDipftiaapafii  176
            ++  YQ        P++ F+ +NT EKD+++F     + L N   + + ++ I  PAF +
Sbjct  91   DRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIFILLPAFTL  150

Query  177  SELKTAFEIGFLLYLPFLVIDmvvssvlmsmgmmmlppvmisLPFKLLIFVLVDGWN  233
            ++L +AF +GFLLYLPF+ ID+++S++L+++GMMM++PV IS+PFK+L+F+LV+GW+
Sbjct  151  GQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

617) Q7A_2938 in NC_017857


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 86.0 bits (307),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 72/177 (41%), Positives = 123/177 (70%), Gaps = 10/177 (5%)

Query  63   SFTRIIIVLAILRQAMGVQSTPSNQIMIGLALFLTFFIMSPV---FSTAYENGVQPYMDG  119
            SF +I+IVL+IL++A+G+Q  P+N  + ++AL LT FIMSPV   ++   E+    Y D 
Sbjct  33   SFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSDR  92

Query  120  DIEATAAIEQVSQPFREFMLAQTRESDIALFAEIG----GYSAIESPDDVPFSLLLPAFV  175
            D+      + +  P+R F+  +T E DI++F   +    G  ++   D + F +LLPAF 
Sbjct  93   DFYQKVE-QGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSI-F-ILLPAFT  149

Query  176  TSELKTAFQIGFLIFVPFLIIDlvvasvlmamgmmmlspmlislpFKLMLFVLIDGW  232
             ++L +AF++GFL+++PF+ IDL+++++L+A+GMMM+SP+ IS+PFK++LF+L++GW
Sbjct  150  LGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

618) fliP in NC_008825


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 72.1 bits (254),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 80/198 (41%), Positives = 143/198 (73%), Gaps = 6/198 (3%)

Query  50   PIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQALGTQSVPPNQVLIGLSLFLTLFV  109
            PI  +++F  LS LP  +++ T+F +IVIVL++L++ALG Q VPPN  + +++L LT+F+
Sbjct  11   PILLIVIFFLLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFI  70

Query  110  MGPTIDKVYSEAYK-PFAANQIAFDEALARGE-APMRSFMLKQTRQSDLMLFARLAKL--  165
            M+P I K+  +  K P+  ++  F + + +G  +P R F+ K+T + D+ +F   AK   
Sbjct  71   MSPVILKINDNIEKNPINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKL  130

Query  166  -DPAVKGEDAPFRVLVPAFVTSELKSAfqigflifipfliidmivasvlmslgmmmlspv  224
             + +V  ED+ F +L+PAF  ++L +AF++GFL+++PF+ ID+I++++L++LGMMM+SPV
Sbjct  131  GNDTVLKEDSIF-ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPV  189

Query  225  lvALPFKLMLFVLADGWN  242
             +++PFK++LF+L +GW+
Sbjct  190  TISIPFKILLFILVGGWQ  207

619) fliP in NC_007759


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 71.0 bits (250),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 81/198 (41%), Positives = 147/198 (75%), Gaps = 11/198 (5%)

Query  59   VIQLLFILTVLSLTPAILLMLTSFTRIVIVLSLLRQAMGTQQMPSNQIIIGLSLFLTFFI  118
            +I ++F+L+VL   P ++++ TSF +IVIVL++L++A+G QQ+P+N  I +++L LT FI
Sbjct  14   LIVIFFLLSVL---PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFI  70

Query  119  MSPVWQSVHSEALK---PYYDEEISGEQAIERAVI-PVKAFMLKQTREKDIALFLQISKG  174
            MSPV   ++ +  K    Y D ++   Q +E++++ P + F+ K+T EKDI++F   +K 
Sbjct  71   MSPVILKINDNIEKNPINYSDRDFY--QKVEQGILSPYRVFLKKNTLEKDISFFESAAKK  128

Query  175  KRPEKPA--DLALSVLVPAFVISELKTAfqigfllflpffiiDmvvasvllsmgmmmlpp  232
            K  +     + ++ +L+PAF +++L +AF++GFLL+LPF+ ID++++++LL++GMMM++P
Sbjct  129  KLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSP  188

Query  233  immslpFKLLLFVLVDGW  250
            + +S+PFK+LLF+LV+GW
Sbjct  189  VTISIPFKILLFILVGGW  206

620) fliP in NC_018140


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 69.7 bits (245),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 86/199 (44%), Positives = 145/199 (73%), Gaps = 14/199 (7%)

Query  46   LQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVM  105
            L I+IF  LL+VLP +++  TSF +I+IVL+IL++A+G+ Q P N  + ++AL +T F+M
Sbjct  13   LLIVIFF-LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIM  71

Query  106  SPVFNKINETAIQ---PYMNERIDFSLALSNAQ-KPLRQFMLNQTRKNDLSLFE-----K  156
            SPV+ KIN+   +    Y ++R DF   + ++   P R F+ ++T  +D+S+FE     K
Sbjct  72   SPVILKINDNIEKNPINY-SDR-DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK  129

Query  157  FANNVPKTLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlvvssllmamgmmmls  216
            ++N+    L E ++ +L+PAF  ++L +AF++GF+L+LPF+ IDL++S++L+A+GMMM+S
Sbjct  130  LGND--TVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVS  187

Query  217  plIISLPFKIMLFVMVDGW  235
            P+ IS+PFKI+LF++V+GW
Sbjct  188  PVTISIPFKILLFILVGGW  206

621) fliP in NC_006369


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 69.7 bits (245),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 85/199 (43%), Positives = 145/199 (73%), Gaps = 14/199 (7%)

Query  46   LQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVM  105
            L I+IF  LL+VLP +++  TSF +I+IVL+IL++A+G+ Q P N  + ++AL +T F+M
Sbjct  13   LLIVIFF-LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIM  71

Query  106  SPVFNKINETAIQ---PYMNERIDFSLALSNAQ-KPLRQFMLNQTRKNDLSLFE-----K  156
            SPV+ KIN+   +    Y ++R DF   + ++   P R F+ ++T  +D+S+FE     K
Sbjct  72   SPVILKINDNIEKNPINY-SDR-DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK  129

Query  157  FAHNVPKTLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlvvssllmamgmmmls  216
            ++++    L E ++ +L+PAF  ++L +AF++GF+L+LPF+ IDL++S++L+A+GMMM+S
Sbjct  130  LGND--TVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVS  187

Query  217  plIISLPFKIMLFVMVDGW  235
            P+ IS+PFKI+LF++V+GW
Sbjct  188  PVTISIPFKILLFILVGGW  206

622) fliP in NC_018139


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 69.7 bits (245),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 85/199 (43%), Positives = 145/199 (73%), Gaps = 14/199 (7%)

Query  46   LQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVM  105
            L I+IF  LL+VLP +++  TSF +I+IVL+IL++A+G+ Q P N  + ++AL +T F+M
Sbjct  13   LLIVIFF-LLSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIM  71

Query  106  SPVFNKINETAIQ---PYMNERIDFSLALSNAQ-KPLRQFMLNQTRKNDLSLFE-----K  156
            SPV+ KIN+   +    Y ++R DF   + ++   P R F+ ++T  +D+S+FE     K
Sbjct  72   SPVILKINDNIEKNPINY-SDR-DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKK  129

Query  157  FAHNVPKTLDEIPMSVLIPAFITSELKTAfqigfilflpfliidlvvssllmamgmmmls  216
            ++++    L E ++ +L+PAF  ++L +AF++GF+L+LPF+ IDL++S++L+A+GMMM+S
Sbjct  130  LGND--TVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVS  187

Query  217  plIISLPFKIMLFVMVDGW  235
            P+ IS+PFKI+LF++V+GW
Sbjct  188  PVTISIPFKILLFILVGGW  206

623) MROS_2143 in NC_018178


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 68.9 bits (242),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 75/185 (41%), Positives = 132/185 (72%), Gaps = 8/185 (4%)

Query  62   PSIVIMTTAYLRIIIVFHFLKSALGTQQMPPSQLLAGIALFITFFIMAPTWNRVNDDALS  121
            P +V++ T++L+I+IV+ +LK+ALG QQ+PP+  ++++AL +T FIM+P   ++ND+   
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  122  PLMDNKISVEEAYNKG----IEPIREFMFKNTREEDLELF--VGLSNLPRPETRNDVPTY  175
              ++   S  + Y+K     + P R F+ KNT E D+ +F   +  +L      ++ + +
Sbjct  85   NPINY--SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIF  142

Query  176  VLIPAFVLSELRigfiigfflfipflMVDmiissilmsmgmmmmppmmislpFKILLFIL  235
            +L+PAF L++L  +F +GF+L++PF+ +D+IIS+IL+++GMMM++P+ IS+PFKILLFIL
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  236  VDGWN  240
            V+GW+
Sbjct  203  VGGWQ  207

624) fliP in NC_017464


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 67.9 bits (238),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 77/185 (42%), Positives = 133/185 (72%), Gaps = 8/185 (4%)

Query  53   PSIIIMTTSYLRIIIVFHFLKSALGTQQMPPGQLLAGVALFITFFVMAPTWNKVNQDALK  112
            P ++++ TS+L+I+IV+ +LK+ALG QQ+PP   +++VAL +T F+M+P   K+N++  K
Sbjct  25   PIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEK  84

Query  113  PLLDEKIGVEEAYNKG----IEPIREFMFKHVRDEDLELFVSMANMSRPNNR--NELPTY  166
                 + +  + Y+K     + P R F+ K+  + D+ +F S A+    N+   +E + +
Sbjct  85   N--PINYSDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIF  142

Query  167  IVVPAFVLSELRTgfiigfflfipfiMVDliissilmsmgmmmlppmlislpFKILLFIL  226
            I++PAF L++L ++F +GF+L++PFI +DLIIS+IL+++GMMM++P+ IS+PFKILLFIL
Sbjct  143  ILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFIL  202

Query  227  VDGWN  231
            V+GW+
Sbjct  203  VGGWQ  207

625) fliP in NC_012115


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 66.8 bits (234),  Expect = 7e-13, Method: Compositional matrix adjust.
 Identities = 75/178 (43%), Positives = 126/178 (71%), Gaps = 8/178 (4%)

Query  60   TSFVRLLVVFGFLRQALGTPQsppttllvslalvlTFFIMEPYA---KQAYNTGIKPYME  116
            TSF+++++V+G+L++ALG  Q PP   + S+ALVLT FIM P     ++  +     Y +
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  117  EKIGYDQAFNNAVKPFKKFMIKNTREKDLALFFRI---RHLPNPKTIDDVPLTILVPAFM  173
              + Y++  +  + P++ F+ KNT EKD++ FF     + L N   + + ++ IL+PAF 
Sbjct  92   RDF-YQKVEQGILSPYRVFLKKNTLEKDIS-FFESAAKKKLGNDTVLKEDSIFILLPAFT  149

Query  174  LSELKTAFEIGfliflpfliiDmvvssilmslgmmmlppvmISLPFKILVFVLVDGWN  231
            L++L +AF +GFL++LPF+ ID+++S+IL++LGMMM++PV IS+PFKIL+F+LV+GW+
Sbjct  150  LGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207

626) ECBG_01258 in NC_020995


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 66.6 bits (233),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 76/189 (41%), Positives = 135/189 (72%), Gaps = 18/189 (9%)

Query  71   TSFTRIIMVLSFVRSSLGTQQNPPNQVLIGLALFLTFFIMKPVYTDVYQQAIEPFDRQEI  130
            TSF +I++VL++++++LG QQ PPN  + ++AL LT FIM PV   + ++ IE  +  + 
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKI-NDNIEK-NPINY  89

Query  131  SQAEAFDRSEKRI----KAFMMVQTREKDIALFAEADGETEKYHSSDDV----PLTVMVP  182
            S+ + +++ E+ I    + F+  +T EKDI++F   ++ + K  ++D V    ++ +++P
Sbjct  90   SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFF---ESAAKKKLGNDTVLKEDSIFILLP  146

Query  183  AFIISELRTAFSigflifipfliidlVVssilmsmgmmmlspimislpFKILLFVLVDGW  242
            AF +++L +AF +GFL+++PF+ IDL++S+IL+++GMMM+SP+ IS+PFKILLF+LV+GW
Sbjct  147  AFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

Query  243  -----YLIV  246
                 YL+V
Sbjct  207  QKIFEYLLV  215

627) Calni_1332 in NC_014758


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 63.9 bits (223),  Expect = 6e-12, Method: Compositional matrix adjust.
 Identities = 82/201 (41%), Positives = 141/201 (71%), Gaps = 10/201 (4%)

Query  39   AVTLQIIFLITILSIAPAILIMMTSFTRIIIVFSFLRSAMGTQQTPPNQVLIGLALFLTF  98
            ++ L +IF++  LS+ P ++++ TSF +I+IV+++L++A+G QQ PPN  + ++AL LT 
Sbjct  11   PILLIVIFFL--LSVLPIFVVIGTSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTM  68

Query  99   FIMSPVF----SEMNKNALAPYLDGKIAFTDALKEAKKPLRKFMLENTRKKDIMTFLQVS  154
            FIMSPV+     +++KN++  Y  ++  +    +    P R F+  NT  KDI  F   +
Sbjct  69   FIMSPVILKINDNIEKNPIN-Y-SDRDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAA  126

Query  155  KSPMPK--TVDDIPDMVLLPAFVTSELQTAfeigfllflpfliidfvvssvllsmgmmml  212
            K  + +   + + +  +LLPAF  ++L++AF +GFLL+LPF+ ID+++S++LL++GMMM+
Sbjct  127  KKKLGNDTVLKEDSIFILLPAFTLGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMV  186

Query  213  ppvmismpFKILLFVLVDGWN  233
            +PV IS+PFKILLF+LV+GW+
Sbjct  187  SPVTISIPFKILLFILVGGWQ  207

628) R2APBS1_2987 in NC_020541


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 54.7 bits (188),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 71/177 (41%), Positives = 124/177 (71%), Gaps = 10/177 (5%)

Query  67   SFTRIIIVLGFLRQALGTQSTPPNQVllglalfltlFVMSPVLNKSYADGVKPYMD--Gq  124
            SF +I+IVLG+L++ALG Q  PPN  + ++AL LT+F+MSPV+ K   +  K  ++  ++
Sbjct  33   SFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSDR  92

Query  125  laaeqalpaasapFKQFMLDQTREADLALF-----TRLAGEKPYAAKADVPFKVAMPAFL  179
               ++   +  +P++ F+  +T E D+++F      +L+ +     K D  F + +PAF 
Sbjct  93   DFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDT--VLKEDSIF-ILLPAFT  149

Query  180  TSELKTAFQMGfllfipfliiDLvvasvlmsmgmmmvspmiisLPFKIMLFVLVDGW  236
             ++L +AF++GFLL++PF+ IDL+++++L+++GMMMVSP+ IS+PFKI+LF+LV+GW
Sbjct  150  LGQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206

629) Anae109_0745 in NC_009675


> JQ747540|39|G35|397782022|AFO66400.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|35053..35706|escR|SESS1635_03848|putative 
LEE-encoded type III secretion system factor
Length=217

 Score = 50.3 bits (171),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 73/177 (42%), Positives = 120/177 (68%), Gaps = 2/177 (1%)

Query  36   TSFLKIVVVLSIARSALGAPQVPPNtavtglalvltalvMAPvgeravaamraapaghgv  95
            TSFLKIV+VL+I ++ALG  QVPPN A+T++ALVLT ++M+PV  +    +   P   + 
Sbjct  32   TSFLKIVIVLGILKNALGIQQVPPNMAITSVALVLTMFIMSPVILKINDNIEKNPINYSD  91

Query  96   aGTLAQLERGS-DPLRGfllrfaraddraafvdvarrlrGPDAAPPAERDLAVLAPAFVV  154
             +   ++E+G   P R FL + +   D + F   A++  G D+    +  + +L PAF +
Sbjct  92   RDFYQKVEQGILSPYRVFLKKNTLEKDISFFESAAKKKLGNDTVLKEDSIF-ILLPAFTL  150

Query  155  SELRRAFTIGflvfvpflvvdlvvsnvllalGLTQLSPTSIALPFKLLLFVAVDGWK  211
            ++L  AF +GFL+++PF+ +DL++SN+LLALG+  +SP +I++PFK+LLF+ V+GW+
Sbjct  151  GQLEAAFKVGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207