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Homologs of hsdR gene of AB462393

190

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) M013TW_0061
( YP_005296531.1 )

Type I restriction-modification system,restriction subunit R

NC_016928
(Staphylococcus aureus M013)

0.0

100

2) hsdR
( YP_008584154.1 )

type I restriction-modification system endonuclease

NC_022442
(Staphylococcus aureus SA957)

0.0

100

3) hsdR
( YP_251977.1 )

type I restriction-modification system restriction subunit

NC_007168
(Staphylococcus haemolyticus JCSC1435)

0.0

4) SAEMRSA15_00470
( YP_006236424.1 )

type I restriction-modification system endonuclease

NC_017763
(Staphylococcus aureus HO 5096 0412)

0.0

5) hsdR
( YP_005754071.1 )

type I restriction-modification system endonuclease

NC_017349
(Staphylococcus aureus LGA251)

0.0

6) SAA6159_00056
( YP_005738228.1 )

type I site-specific deoxyribonuclease restriction subunit

NC_017338
(Staphylococcus aureus JKD6159)

0.0

7) SABB_01782
( YP_008167216.1 )

Type I restriction enzyme HindVIIP R-like protein

NC_021670
(Staphylococcus aureus Bmb9393)

0.0

8) SAMSHR1132_00490
( YP_005324572.1 )

type I restriction-modification system endonuclease (fragment)

NC_016941
(Staphylococcus aureus MSHR1132)

0.0

9) SAT0131_02861
( YP_005753900.1 )

Type I restriction-modification system endonuclease -like proteinue

NC_017347
(Staphylococcus aureus T0131)

0.0

10) Clocl_3622
( YP_005048015.1 )

HsdR family type I site-specific deoxyribonuclease

NC_016627
(Clostridium clariflavum DSM 19732)

0.0

11) Desdi_0311
( YP_007219255.1 )

HsdR family type I site-specific deoxyribonuclease

NC_019903
(Desulfitobacterium dichloroeliminans LMG P-21439)

0.0

12) hsdR
( YP_001681587.1 )

type i site-specific deoxyribonuclease, hsdr family

NC_010337
(Heliobacterium modesticaldum Ice1)

0.0

13) DCF50_p1408
( YP_006913399.1 )

Type I restriction-modification system, restriction subunit R

NC_018867
(Dehalobacter sp. CF)

0.0

14) Amico_0451
( YP_003553316.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014011
(Aminobacterium colombiense DSM 12261)

0.0

15) Cyan7822_0695
( YP_003886002.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014501
(Cyanothece sp. PCC 7822)

0.0

16) hsdR1
( YP_001620584.1 )

type I site-specific restriction-modification system, R (restriction) subunit

NC_010163
(Acholeplasma laidlawii PG-8A)

0.0

17) hsdR
( YP_004570379.1 )

type I site-specific deoxyribonuclease

NC_015634
(Bacillus coagulans 2-6)

0.0

18) Acid345_3755
( YP_592829.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008009
(Candidatus Koribacter versatilis Ellin345)

0.0

19) Cylst_5220
( YP_007149934.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_019757
(Cylindrospermum stagnale PCC 7417)

0.0

20) F7308_0305
( YP_004646833.1 )

type I restriction-modification system, R subunit

NC_015696
(Francisella sp. TX077308)

0.0

21) hsdR
( YP_004649007.1 )

type I site-specific deoxyribonuclease

NC_015697
(Lactobacillus reuteri SD2112)

0.0

22) Calni_0580
( YP_004050655.1 )

type I site-specific deoxyribonuclease, hsdr family

NC_014758
(Calditerrivibrio nitroreducens DSM 19672)

0.0

23) KN400_0449
( YP_006889493.1 )

type I restriction endonuclease, HsdR family

NC_017454
(Geobacter sulfurreducens KN400)

0.0

24) NIS_1703
( YP_001357166.1 )

type I restriction-modification system, R subunit

NC_009662
(Nitratiruptor sp. SB155-2)

0.0

25) hsdR1
( YP_005268567.1 )

type I restriction-modification system restriction subunit HsdR1

NC_016894
(Acetobacterium woodii DSM 1030)

0.0

26) Desgi_1004
( YP_007944218.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_021184
(Desulfotomaculum gibsoniae DSM 7213)

0.0

27) MM_2204
( NP_634228.1 )

hypothetical protein

NC_003901
(Methanosarcina mazei Go1)

0.0

28) Nhal_0892
( YP_003526454.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_013960
(Nitrosococcus halophilus Nc 4)

0.0

29) SYN_00497
( YP_462086.1 )

type I restriction-modification system restriction subunit

NC_007759
(Syntrophus aciditrophicus SB)

0.0

30) Syn6312_0882
( YP_007060633.1 )

HsdR family type I site-specific deoxyribonuclease

NC_019680
(Synechococcus sp. PCC 6312)

0.0

31) Turpa_2677
( YP_006440822.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_018020
(Turneriella parva DSM 21527)

0.0

32) Metho_1322
( YP_007313073.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_019977
(Methanomethylovorans hollandica DSM 15978)

0.0

33) Lreu_0874
( YP_001271474.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009513
(Lactobacillus reuteri DSM 20016)

0.0

34) LAR_0819
( YP_001841815.1 )

type I restriction-modification system restriction subnit

NC_010609
(Lactobacillus reuteri JCM 1112)

0.0

35) Spica_2695
( YP_004699300.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_015732
(Treponema caldaria DSM 7334)

0.0

36) Veis_3131
( YP_997880.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008786
(Verminephrobacter eiseniae EF01-2)

0.0

37) LRI_1098
( YP_008099452.1 )

HsdR family type I site-specific deoxyribonuclease

NC_021494
(Lactobacillus reuteri I5007)

0.0

38) Dacet_2560
( YP_003505275.1 )

HsdR family type I site-specific deoxyribonuclease

NC_013943
(Denitrovibrio acetiphilus DSM 12809)

0.0

39) Cyan7425_3142
( YP_002483831.1 )

HsdR family type I site-specific deoxyribonuclease

NC_011884
(Cyanothece sp. PCC 7425)

0.0

40) hsdR
( YP_008105285.1 )

type I restriction-modification system restriction subunit

NC_021499
(Pseudomonas resinovorans NBRC 106553)

0.0

41) MROS_1287
( YP_006527537.1 )

HsdR family type I site-specific deoxyribonuclease

NC_018178
(Melioribacter roseus P3M-2)

0.0

42) Caur_1816
( YP_001635422.1 )

HsdR family type I site-specific deoxyribonuclease

NC_010175
(Chloroflexus aurantiacus J-10-fl)

0.0

43) Chy400_1964
( YP_002569695.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012032
(Chloroflexus sp. Y-400-fl)

0.0

44) Mbur_1213
( YP_565885.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007955
(Methanococcoides burtonii DSM 6242)

0.0

45) MmarC6_0040
( YP_001548098.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009975
(Methanococcus maripaludis C6)

0.0

46) MmarC7_0017
( YP_001329240.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009637
(Methanococcus maripaludis C7)

0.0

47) Mmol_0222
( YP_003047659.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012968
(Methylotenera mobilis JLW8)

0.0

48) G432_08520
( YP_007616025.1 )

HsdR family type I site-specific deoxyribonuclease

NC_020561
(Sphingomonas sp. MM-1)

0.0

49) GYY_04440
( YP_004742506.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015847
(Methanococcus maripaludis X1)

0.0

50) Metme_1967
( YP_004512879.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015572
(Methylomonas methanica MC09)

0.0

51) Xfasm12_2283
( YP_001776760.1 )

Type I site-specific deoxyribonuclease

NC_010513
(Xylella fastidiosa M12)

0.0

52) Rfer_4010
( YP_525239.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007908
(Rhodoferax ferrireducens T118)

0.0

53) Galf_1221
( YP_003847013.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014394
(Gallionella capsiferriformans ES-2)

0.0

54) Clocl_1698
( YP_005046236.1 )

HsdR family type I site-specific deoxyribonuclease

NC_016627
(Clostridium clariflavum DSM 19732)

0.0

55) Neut_0537
( YP_746777.1 )

type I site-specific deoxyribonuclease, HsdR family protein

NC_008344
(Nitrosomonas eutropha C91)

0.0

56) hsdR
( YP_002759690.1 )

type I restriction-modification system restriction subunit

NC_012489
(Gemmatimonas aurantiaca T-27)

0.0

57) LFE_0359
( YP_005468211.1 )

type I sitespecific deoxyribonuclease, HsdR family

NC_017094
(Leptospirillum ferrooxidans C2-3)

0.0

58) XF2739
( NP_300016.2 )

type I restriction-modification system endonuclease

NC_002488
(Xylella fastidiosa 9a5c)

0.0

59) Dgeo_2012
( YP_605475.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008025
(Deinococcus geothermalis DSM 11300)

0.0

60) CJA_3632
( YP_001984085.1 )

HsdR protein

NC_010995
(Cellvibrio japonicus Ueda107)

0.0

61) Ppro_1854
( YP_901524.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008609
(Pelobacter propionicus DSM 2379)

0.0

62) TREAZ_2426
( YP_004528992.1 )

putative type-1 restriction enzyme MjaXP R protein

NC_015577
(Treponema azotonutricium ZAS-9)

0.0

63) hsdR
( YP_002952899.1 )

type I restriction enzyme R protein

NC_012796
(Desulfovibrio magneticus RS-1)

0.0

64) A458_03965
( YP_006456468.1 )

type I restriction-modification enzyme, R subunit

NC_018028
(Pseudomonas stutzeri CCUG 29243)

0.0

65) PP1Y_AT2851
( YP_004533071.1 )

putative type I restriction-modification system HsdR

NC_015580
(Novosphingobium sp. PP1Y)

0.0

66) CAP2UW1_1871
( YP_003167098.1 )

HsdR family type I site-specific deoxyribonuclease

NC_013194
(Candidatus Accumulibacter phosphatis UW-1)

0.0

67) Ngar_c29150
( YP_006863491.1 )

HsdR family type I site-specific deoxyribonuclease

NC_018719
(Candidatus Nitrososphaera gargensis enrichment culture Ga9.2)

0.0

68) MmTuc01_2253
( YP_007490847.1 )

Type I restriction-modification system, restriction subunit R

NC_020389
(Methanosarcina mazei Tuc01)

0.0

69) Pnap_4782
( YP_973933.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008761
(Polaromonas naphthalenivorans CJ2)

0.0

70) Cag_1124
( YP_379429.1 )

Type I site-specific deoxyribonuclease HsdR

NC_007514
(Chlorobium chlorochromatii CaD3)

0.0

71) Bpro_1944
( YP_548773.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007948
(Polaromonas sp. JS666)

0.0

72) RoseRS_0281
( YP_001274663.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009523
(Roseiflexus sp. RS-1)

0.0

73) Thein_1571
( YP_004626395.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_015681
(Thermodesulfatator indicus DSM 15286)

0.0

74) Veis_3013
( YP_997764.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008786
(Verminephrobacter eiseniae EF01-2)

0.0

75) hsdR2
( YP_003623498.1 )

Type I site-specific deoxyribonuclease HsdR

NC_014145
(Thiomonas sp. 3As)

0.0

76) Zmob_1744
( YP_005527847.1 )

HsdR family type I site-specific deoxyribonuclease

NC_017180
(Zymomonas mobilis ATCC 10988)

0.0

77) Anacy_6058
( YP_007160104.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_019773
(Anabaena cylindrica PCC 7122)

0.0

78) Mpe_A0011
( YP_001019208.1 )

type I site-specific deoxyribonuclease

NC_008825
(Methylibium petroleiphilum PM1)

0.0

79) Mhun_2781
( YP_504195.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007796
(Methanospirillum hungatei JF-1)

0.0

80) R2APBS1_3887
( YP_007592173.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_020541
(Rhodanobacter sp. 2APBS1)

0.0

81) Acav_4671
( YP_004237117.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015138
(Acidovorax avenae ATCC 19860)

0.0

82) CFSAN002050_05875
( YP_008259121.1 )

DEAD/DEAH box helicase

NC_021818
(Salmonella enterica CFSAN002050)

0.0

83) Sputcn32_2912
( YP_001184428.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009438
(Shewanella putrefaciens CN-32)

0.0

84) hsdR
( YP_771133.1 )

putative type I restriction-modification system HsdR

NC_008384
(Rhizobium leguminosarum 3841)

0.0

85) SCE1572_29155
( YP_008152220.1 )

hypothetical protein

NC_021658
(Sorangium cellulosum So0157-2)

0.0

86) STH1908
( YP_075737.1 )

type I restriction-modification system endonuclease

NC_006177
(Symbiobacterium thermophilum IAM 14863)

0.0

87) hsdR1
( YP_003623201.1 )

Type I site-specific deoxyribonuclease HsdR

NC_014145
(Thiomonas sp. 3As)

0.0

88) hsdR3
( YP_003626028.1 )

Type I site-specific deoxyribonuclease HsdR

NC_014145
(Thiomonas sp. 3As)

0.0

89) Mrub_2450
( YP_003508221.1 )

type I site-specific deoxyribonuclease HsdR family

NC_013946
(Meiothermus ruber DSM 1279)

0.0

90) K649_10280
( YP_007880845.1 )

type I site-specific deoxyribonuclease HsdR family protein

NC_021081
(Meiothermus ruber DSM 1279)

0.0

91) hsdR
( YP_005801360.1 )

type I restriction-modification system endonuclease

NC_017390
(Erwinia pyrifoliae DSM 12163)

0.0

92) EpC_05850
( YP_002647617.1 )

type I restriction-modification system restriction subunit

NC_012214
(Erwinia pyrifoliae Ep1/96)

0.0

93) PGA2_c07320
( YP_006561993.1 )

type I restriction-modification system, R subunit

NC_018286
(Phaeobacter gallaeciensis 2.10)

0.0

94) Rhom172_1461
( YP_004825222.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015966
(Rhodothermus marinus SG0.5JP17-172)

0.0

95) Rfer_0028
( YP_521321.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007908
(Rhodoferax ferrireducens T118)

0.0

96) VFMJ11_B0055
( YP_002157417.1 )

type I site-specific deoxyribonuclease

NC_011185
(Vibrio fischeri MJ11)

0.0

97) H650_18270
( YP_008109408.1 )

DEAD/DEAH box helicase

NC_021500
(Enterobacter sp. R4-368)

0.0

98) EcE24377A_0289
( YP_001461443.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009801
(Escherichia coli E24377A)

0.0

99) TSC_c12320
( YP_004202401.1 )

type I site-specific deoxyribonuclease HsdR

NC_014974
(Thermus scotoductus SA-01)

0.0

100) PCC21_032460
( YP_006647902.1 )

type I restriction-modification system subunit R

NC_018525
(Pectobacterium carotovorum PCC21)

0.0

101) CSSP291_03040
( YP_007439495.1 )

hypothetical protein

NC_020260
(Cronobacter sakazakii Sp291)

0.0

102) PT7_2213
( YP_004417377.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015458
(Pusillimonas sp. T7-7)

0.0

103) hsdR
( YP_007595121.1 )

type I restriction-modification system, restriction subunit R

NC_020547
(Acinetobacter baumannii D1279779)

0.0

104) PSTAB_3393
( YP_004715763.1 )

type I restriction-modification enzyme, R subunit

NC_015740
(Pseudomonas stutzeri ATCC 17588)

0.0

105) XOO_3254
( YP_452283.1 )

type I restriction-modification system endonuclease

NC_007705
(Xanthomonas oryzae MAFF 311018)

0.0

106) EJP617_05160
( YP_005817084.1 )

Type I restriction-modification system restriction subunit

NC_017445
(Erwinia sp. Ejp617)

0.0

107) Ser39006_0954
( YP_008521336.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_022268
(Serratia sp. ATCC 39006)

0.0

108) AFE_2790
( YP_002427160.1 )

type I restriction-modification enzyme, R subunit

NC_011761
(Acidithiobacillus ferrooxidans ATCC 23270)

0.0

109) Lferr_2413
( YP_002220816.1 )

HsdR family type I site-specific deoxyribonuclease

NC_011206
(Acidithiobacillus ferrooxidans ATCC 53993)

0.0

110) Arth_0986
( YP_830483.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008541
(Arthrobacter sp. FB24)

0.0

111) APECO78_16850
( YP_007382535.1 )

HsdR family type I site-specific deoxyribonuclease

NC_020163
(Escherichia coli APEC O78)

0.0

112) PSPTO_1089
( NP_790923.1 )

type I restriction-modification enzyme, R subunit

NC_004578
(Pseudomonas syringae DC3000)

0.0

113) ESA_00617
( YP_001436737.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

0.0

114) Tola_1223
( YP_002892426.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012691
(Tolumonas auensis DSM 9187)

0.0

115) EcE24377A_2911
( YP_001463946.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009801
(Escherichia coli E24377A)

0.0

116) MM_0431
( NP_632455.1 )

type I restriction-modification system restriction subunit

NC_003901
(Methanosarcina mazei Go1)

0.0

117) hsdR
( YP_001854379.1 )

type I restriction enzyme R protein

NC_010617
(Kocuria rhizophila DC2201)

0.0

118) Shewana3_4244
( YP_863759.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008573
(Shewanella sp. ANA-3)

0.0

119) Desal_2732
( YP_002992325.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012881
(Desulfovibrio salexigens DSM 2638)

0.0

120) Psest_4044
( YP_007242144.1 )

HsdR family type I site-specific deoxyribonuclease

NC_019936
(Pseudomonas stutzeri RCH2)

0.0

121) Nwat_1306
( YP_003760553.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014315
(Nitrosococcus watsonii C-113)

0.0

122) CJJ81176_1534
( YP_001001189.1 )

type I restriction-modification enzyme, R subunit

NC_008787
(Campylobacter jejuni 81-176)

0.0

123) hsdR
( YP_005656818.1 )

putative type I restriction enzyme R protein

NC_017279
(Campylobacter jejuni IA3902)

0.0

124) hsdR
( YP_002344921.1 )

type I restriction enzyme R protein

NC_002163
(Campylobacter jejuni NCTC 11168)

0.0

125) hsdR
( YP_006633669.1 )

type I restriction enzyme R protein

NC_018521
(Campylobacter jejuni NCTC 11168-BN148)

0.0

126) A911_07460
( YP_006858536.1 )

putative type I restriction enzyme R protein

NC_018709
(Campylobacter jejuni PT14)

0.0

127) hsdR3
( YP_008562898.1 )

type I restriction enzyme, R subunit

NC_022362
(jejuni jejuni 00-2425)

0.0

128) hsdR3
( YP_008541144.1 )

type I restriction enzyme, R subunit

NC_022352
(jejuni jejuni 00-2426)

0.0

129) hsdR3
( YP_008539461.1 )

type I restriction enzyme, R subunit

NC_022351
(jejuni jejuni 00-2538)

0.0

130) hsdR3
( YP_008542866.1 )

type I restriction enzyme, R subunit

NC_022353
(jejuni jejuni 00-2544)

0.0

131) CYCME_0985
( YP_008373677.1 )

Type I site-specific restriction-modification system, R (restriction) subunit-related helicase

NC_021917
(Cycloclasticus zancles 7-ME)

0.0

132) BN4_12249
( YP_007494635.1 )

putative type I restriction enzyme HindVIIP R protein

NC_020409
(Desulfovibrio piezophilus C1TLV30)

0.0

133) Calow_2045
( YP_004003356.1 )

type i site-specific deoxyribonuclease, hsdr family

NC_014657
(Caldicellulosiruptor owensensis OL)

0.0

134) Noc_1804
( YP_343804.1 )

type I topoisomerase

NC_007484
(Nitrosococcus oceani ATCC 19707)

0.0

135) Tmath_1861
( YP_003677563.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_014209
(Thermoanaerobacter mathranii A3)

0.0

136) Maqu_3386
( YP_960644.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008740
(Marinobacter aquaeolei VT8)

0.0

137) Jden_2251
( YP_003162189.1 )

HsdR family type I site-specific deoxyribonuclease

NC_013174
(Jonesia denitrificans DSM 20603)

0.0

138) MARHY0349
( YP_005428274.1 )

type I restriction enzyme HindVIIP R protein

NC_017067
(Marinobacter hydrocarbonoclasticus ATCC 49840)

0.0

139) Sbal223_4470
( YP_002364291.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_011668
(Shewanella baltica OS223)

0.0

140) hsdR
( NP_840469.1 )

restriction enzyme type I helicase subunits and related helicases

NC_004757
(Nitrosomonas europaea ATCC 19718)

0.0

141) hsdR
( NP_246480.1 )

hypothetical protein

NC_002663
(Pasteurella multocida Pm70)

0.0

142) NT08PM_1867
( YP_006240732.1 )

putative type I restriction enzyme MjaXP R protein

NC_017764
(Pasteurella multocida 3480)

0.0

143) alr4604
( NP_488644.1 )

type I site-specific deoxyribonuclease chain R

NC_003272
(Nostoc sp. PCC 7120)

0.0

144) hsdR
( YP_005446850.1 )

type I restriction-modification system restriction subunit

NC_017080
(Phycisphaera mikurensis NBRC 102666)

0.0

145) hsdR3
( YP_001053343.1 )

type I site-specific restriction-modification system, restriction subunit

NC_009053
(Actinobacillus pleuropneumoniae L20)

0.0

146) Mzhil_1435
( YP_004616498.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015676
(Methanosalsum zhilinae DSM 4017)

0.0

147) GLX_22380
( YP_004869020.1 )

type I/III endonuclease restriction R subunit

NC_016027
(Gluconacetobacter xylinus NBRC 3288)

0.0

148) ASU2_03875
( YP_006817152.1 )

putative type I site-specific restriction-modification system, restriction subunit

NC_018690
(Actinobacillus suis H91-0380)

0.0

149) hsdR
( YP_002474982.1 )

Type I site-specific restriction-modification system, R (restriction) subunit and related helicases

NC_011852
(Haemophilus parasuis SH0165)

0.0

150) K756_04780
( YP_008123717.1 )

Type I site-specific restriction-modification system, R (restriction) subunit-related helicase

NC_021521
(Haemophilus parasuis ZJ0906)

0.0

151) hsdR
( YP_005829269.1 )

Type I restriction enzyme HindVIIP, R protein

NC_017452
(Haemophilus influenzae R2846)

0.0

152) XOO3452
( YP_202091.6 )

type I restriction-modification system endonuclease

NC_006834
(Xanthomonas oryzae KACC10331)

0.0

153) CGSHiEE_04165
( YP_001290621.1 )

putative type I restriction enzyme HindVIIP R protein

NC_009566
(Haemophilus influenzae PittEE)

0.0

154) hsdR3
( YP_004135181.1 )

type i restriction enzyme hindviip r protein

NC_014920
(Haemophilus influenzae F3031)

0.0

155) GWCH70_1642
( YP_002949695.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012793
(Geobacillus sp. WCH70)

0.0

156) PARA_15870
( YP_004823273.1 )

hypothetical protein

NC_015964
(Haemophilus parainfluenzae T3T1)

0.0

157) Plabr_4424
( YP_004272018.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015174
(Planctomyces brasiliensis DSM 5305)

0.0

158) hsdR3
( YP_249269.1 )

type I restriction enzyme HindVIIP R protein

NC_007146
(Haemophilus influenzae 86-028NP)

0.0

159) HMPREF0868_0494
( YP_003474824.1 )

HsdR family type I site-specific deoxyribonuclease

NC_013895
(Clostridiales genomosp. UPII9-5)

0.0

160) WQG_11930
( YP_007548261.1 )

type I restriction enzyme HindVIIP R protein

NC_020515
(Bibersteinia trehalosi USDA-ARS-USMARC-192)

0.0

161) Ethha_0476
( YP_004090792.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014828
(Ethanoligenens harbinense YUAN-3)

0.0

162) J450_02390
( YP_008219540.1 )

type I restriction endonuclease HindVIIP subunit R

NC_021738
(Mannheimia haemolytica D171)

0.0

163) MHH_c24310
( YP_007884225.1 )

type I restriction enzyme, R subunit

NC_021082
(Mannheimia haemolytica M42548)

0.0

164) F382_03180
( YP_008233518.1 )

type I restriction endonuclease HindVIIP subunit R

NC_021743
(Mannheimia haemolytica D153)

0.0

165) J451_03490
( YP_008222094.1 )

type I restriction endonuclease HindVIIP subunit R

NC_021739
(Mannheimia haemolytica D174)

0.0

166) D650_9850
( YP_007665762.1 )

type I restriction enzyme HindVIIP R protein

NC_020833
(Mannheimia haemolytica USDA-ARS-USMARC-183)

0.0

167) D648_15990
( YP_007669111.1 )

type I restriction enzyme HindVIIP R protein

NC_020834
(Mannheimia haemolytica USDA-ARS-USMARC-185)

0.0

168) N220_08970
( YP_008339235.1 )

type I restriction endonuclease HindVIIP subunit R

NC_021883
(Mannheimia haemolytica USMARC_2286)

0.0

169) FMG_1372
( YP_001692680.1 )

type I restriction-modification system restriction subunit

NC_010376
(Finegoldia magna ATCC 29328)

0.0

170) GYMC52_2377
( YP_004132907.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014915
(Geobacillus sp. Y412MC52)

0.0

171) GYMC61_0288
( YP_003251463.1 )

HsdR family type I site-specific deoxyribonuclease

NC_013411
(Geobacillus sp. Y412MC61)

0.0

172) Mpet_1680
( YP_003894871.1 )

type I site-specific deoxyribonuclease

NC_014507
(Methanoplanus petrolearius DSM 11571)

0.0

173) hsdR
( YP_005827547.1 )

Type I restriction enzyme HindVIIP, R protein

NC_017451
(Haemophilus influenzae R2866)

0.0

174) UMN179_00648
( YP_004419579.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015460
(Gallibacterium anatis UMN179)

0.0

175) Desaf_3450
( YP_005053395.1 )

HsdR family type I site-specific deoxyribonuclease

NC_016629
(Desulfovibrio africanus Walvis Bay)

0.0

176) hsdR
( NP_439437.1 )

type I restriction enzyme

NC_000907
(Haemophilus influenzae Rd KW20)

0.0

177) SFBM_0021
( YP_004770546.1 )

type I restriction-modification system, restriction protein

NC_015913
(Candidatus Arthromitus sp. mouse isolate)

0.0

178) hsdR
( YP_005667738.1 )

HsdR family type I site-specific deoxyribonuclease

NC_017294
(Candidatus Arthromitus sp. SFB-mouse-Yit)

0.0

179) HICON_18090
( YP_004138718.1 )

type I restriction enzyme HindVIIP R protein

NC_014922
(Haemophilus influenzae F3047)

0.0

180) HMPREF0389_01038
( YP_005055168.1 )

50S ribosomal protein L7/L12

NC_016630
(Filifactor alocis ATCC 35896)

0.0

181) FP2_17130
( YP_007837446.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_021042
(Faecalibacterium prausnitzii L2/6)

0.0

182) Desru_3588
( YP_004547076.1 )

type I site-specific deoxyribonuclease HsdR family

NC_015589
(Desulfotomaculum ruminis DSM 2154)

0.0

183) HIB_14360
( YP_005179461.1 )

putative type I restriction enzyme HindVIIP R protein

NC_016809
(Haemophilus influenzae 10810)

0.0

184) Alfi_1812
( YP_006410821.1 )

HsdR family type I site-specific deoxyribonuclease

NC_018011
(Alistipes finegoldii DSM 17242)

0.0

185) AL1_19090
( YP_007817023.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_021030
(Alistipes shahii WAL 8301)

0.0

186) Dtpsy_1863
( YP_002553320.1 )

type I site-specific deoxyribonuclease, hsdr family

NC_011992
(Acidovorax ebreus TPSY)

0.0

187) Shel_17680
( YP_003144136.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_013165
(Slackia heliotrinireducens DSM 20476)

2e-180

188) FP2_13030
( YP_007837104.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_021042
(Faecalibacterium prausnitzii L2/6)

5e-179

189) hsdR
( YP_004887388.1 )

type I restriction-modification system restriction subunit

NC_016052
(Tetragenococcus halophilus NBRC 12172)

9e-175

190) M493_07025
( REF_PRJNA208285:M493 )

hypothetical protein

NC_022080
(Geobacillus sp. JF8)

2e-124

• Sequence Alignments

1) M013TW_0061 in NC_016928


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score = 1683 bits (6391),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1039/1039 (100%), Positives = 1039/1039 (100%), Gaps = 0/1039 (0%)

Query  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60
             MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120
             SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180
             YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240
             KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300
             LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360
             HTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP
Sbjct  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420
             KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480
             NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540
             ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600
             VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV
Sbjct  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600

Query  601   MTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDK  660
             MTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDK
Sbjct  601   MTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDK  660

Query  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720
             PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE
Sbjct  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720

Query  721   LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780
             LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK
Sbjct  721   LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780

Query  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV  840
             AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV
Sbjct  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV  840

Query  841   TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV  900
             TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV
Sbjct  841   TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV  900

Query  901   SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALA  960
             SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALA
Sbjct  901   SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALA  960

Query  961   SHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL  1020
             SHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL
Sbjct  961   SHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL  1020

Query  1021  QKMAVEQVVEQAELMANNQ  1039
             QKMAVEQVVEQAELMANNQ
Sbjct  1021  QKMAVEQVVEQAELMANNQ  1039

2) hsdR in NC_022442


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score = 1683 bits (6391),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1039/1039 (100%), Positives = 1039/1039 (100%), Gaps = 0/1039 (0%)

Query  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60
             MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120
             SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180
             YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240
             KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300
             LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360
             HTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP
Sbjct  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420
             KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480
             NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540
             ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600
             VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV
Sbjct  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600

Query  601   MTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDK  660
             MTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDK
Sbjct  601   MTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDK  660

Query  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720
             PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE
Sbjct  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720

Query  721   LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780
             LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK
Sbjct  721   LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780

Query  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV  840
             AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV
Sbjct  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV  840

Query  841   TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV  900
             TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV
Sbjct  841   TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV  900

Query  901   SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALA  960
             SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALA
Sbjct  901   SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALA  960

Query  961   SHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL  1020
             SHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL
Sbjct  961   SHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL  1020

Query  1021  QKMAVEQVVEQAELMANNQ  1039
             QKMAVEQVVEQAELMANNQ
Sbjct  1021  QKMAVEQVVEQAELMANNQ  1039

3) hsdR in NC_007168


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score = 1651 bits (6271),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1010/1039 (98%), Positives = 1029/1039 (99%), Gaps = 0/1039 (0%)

Query  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60
             MNFQFNEDDLEQV LEWL+SL+YDYKKGNEISMT+L+PERKSDKDVVLHERLEKALRKIN
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120
             SDIHPRFIEKA+HELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKI+DFE
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180
              PQNNDFLAVNQ+T+VNGDY KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240
             KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG+TESS++LASLDVLI+GM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300
             LNP TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASS QGDGKGGVIW
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360
             HTQGSGKSLTMVFFSGKLIQMLNNPTLV+VTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP
Sbjct  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420
             KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNET MAALTERKNVIVMADEAHRTQYGF
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480
             NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540
             ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600
             VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV
Sbjct  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600

Query  601   MTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK  660
             MTGSSSDPTSFQRHIGPKKRR++LEKRMKDV+DELQLVIVRDMWLTGFDVPSMHTMYIDK
Sbjct  601   MTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDK  660

Query  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720
             PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE
Sbjct  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720

Query  721   LMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780
             LMLLKYDVIQDMLYNLDYSKFNS+KKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK
Sbjct  721   LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780

Query  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV  840
             AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV
Sbjct  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV  840

Query  841   TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV  900
             TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV
Sbjct  841   TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV  900

Query  901   SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALV  960
             SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL 
Sbjct  901   SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALA  960

Query  961   SHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL  1020
             SHETAK AM DK LRAIAHELTKTVKENM+VDWSKRDSAKAKMRVAVRRLLKKYGYPPDL
Sbjct  961   SHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL  1020

Query  1021  QKMAVEQVVEQAELMASNQ  1039
             QKMAVEQVVEQAELMA+NQ
Sbjct  1021  QKMAVEQVVEQAELMANNQ  1039

4) SAEMRSA15_00470 in NC_017763


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score = 1459 bits (5537),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 847/1040 (82%), Positives = 976/1040 (94%), Gaps = 1/1040 (0%)

Query  3     MIFQFSEDDLEQVALKWFEGLGYSVKNGRDSSDNGIMNERESDKDVVLDDRLEAALRRIN  62
             M FQF+EDDLEQVAL W+++LGY  K+G + S  ++  ER SDKDVVL++RLE ALR+IN
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  63    PELNNSAIEQAIHEISIEKSPSLLENNRSFHEMITNGIEVEHYNDDGETINDLVYVLDFD  122
             ++++   IE+A+HE+++EKSP+LLENN +FHE + NGIE+E+Y+D+G++I ++V ++DF+
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  123   NPGNNDFLAVNQLTVVNGDYKKRPDIVLFINGLPVVVIELKNSTNESVGIEDGYHQLETY  182
              P NNDFLAVNQLT+VNGDYKKRPDIVLFINGLP+VVIELKNSTNE+VG+EDGYHQLETY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  183   KMRIPQLFNHNAVLVTSDGVNTKAGSLTADYDRFMTWRTKDGKTEDSSTFRSLDILIHGM  242
             KMRIPQLF  N VLVTSDG+NTKAGSLTA+YDRFMTWR+KDG+TE S+ + SLD+LIHGM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  243   LNKEVLLDLIRHFVLFQDDGKGNIVKILAAYHQYYAVNKAVDRAMEATSEHGDGKGGVIW  302
             LN E LLDLIR FVLFQDDGKG+I KILAAYHQYYAVNKAVDRA+ A+SE+GDGKGGVIW
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  303   HTQGSGKSLTMVFFSGKLIQKLNNPTLVVVTDRNDLDNQLYGTFVKSKGRSGKGLLRQTP  362
             HTQGSGKSLTMVFFSGKLIQ LNNPTLVVVTDRNDLDNQLY+TFVKSKGRSGKGLLRQTP
Sbjct  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  363   KQAESRKELKELLSVESGGIVFTTMQKFEPEEGQVTMDALTERKNVVVMADEAHRTQYGF  422
             KQAE+RKELK LLSVESGGIVFTTMQKFEPE+ + TM ALTERKNV+VMADEAHRTQYGF
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  423   KATYNEKGEGIKYGYAKYLRDALPNASFVGFTGTPVSSTDKNTQMVFGNYIDVYDMTQSV  482
             +A Y++KGEGIKYGYAKYLRDALPNA+FVGFTGTPV+STDKNTQMVFGNYIDVYDMTQ+V
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  483   EDGSTVKIYYESRIIPLNLPTDLDIDDAYDVITFGQEEDTKSRLKSKWSRIEALSGAEKR  542
              DGSTVKIYYESR+IPLNLP  LD+D+AY+ IT +QEED K RLKSKWSRIEAL+GA  R
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  543   VHALATEIINHFETRQKAMNGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  602
             V+ALA +II+HFETRQ+AM+GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV
Sbjct  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600

Query  603   MTGSSSDPQNFQKHIGPKKRRNLLENRMKDINDELQLVIVRDMWLTGFDVPSMHTMYIDK  662
             MTGSSSDP +FQ+HIGPKKRRNLLE+RMKD++DELQLVIVRDMWLTGFDVPSMHTMYIDK
Sbjct  601   MTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDK  660

Query  663   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTDSDREQTGIDTDKALE  722
             PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT+SD+ QT+IDTDKA+E
Sbjct  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720

Query  723   LMLVKYDIIQDMLYNHDYSDFESEDQLNRYNAISNTMDYIIGLGEKERERFVTTVTELSK  782
             LML+KYD+IQDMLYN DYS F+S+ + +RY +ISNTMDY+IGLGE ER+RF+ TVTEL+K
Sbjct  721   LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780

Query  783   AFALCATEEAAQELNSEIAFLKAVKSGLVKLLAPPNEGSKLKKTPAEIEAEINQLISKSV  842
             AFALCATE +AQELN EIAF+KAVK+GLVKLL PP+EG K +KTPAE+EAEINQL+S+SV
Sbjct  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEG-KTRKTPAEVEAEINQLVSQSV  839

Query  843   VTEEVVDIYQTLGIENPDISILSDDFLKDVEGLQQKNVAVELLNKLLKGQVKSLMKTNTT  902
             VTE+V+D+YQTLG+E+PD+SILSDDFLKDVEGL+QKNVAVELLN+LLKGQVKSLMKTN+T
Sbjct  840   VTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNAT  899

Query  903   VSKRFSEMLSKSIQKYNNRSIEASKVIEELIQMAKEINQEKERGKELGLSTEEIAFYDAL  962
             VSKRFSEML++SI+KYN+RSIE+SKVIEELIQ+AK+I+QE++RG+ELGL+++EIAFYDAL
Sbjct  900   VSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL  959

Query  963   ASHETAKEAMDDKELRAIAHELTKTVKNNMSVDWSKRESAKAKMRVQVRRLLKKYGYPPD  1022
             ASHETAKEAM+DKELRAIAHELTKTVK+NM+VDWSKR+SAKAKMRV VRRLLKKYGYPPD
Sbjct  960   ASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPD  1019

Query  1023  IQKMAVEQVVEQAELMASQQ  1042
             +QKMAVEQVVEQAELMA++Q
Sbjct  1020  LQKMAVEQVVEQAELMANNQ  1039

5) hsdR in NC_017349


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score = 1459 bits (5537),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 847/1040 (82%), Positives = 974/1040 (94%), Gaps = 1/1040 (0%)

Query  1     MSFQFSEDDLEQVALKWFEGLGYSVKNGRDSSDNGIMNERESDKDVVFDDRLEAALRRIN  60
             M+FQF+EDDLEQVAL W+++LGY  K+G + S  ++  ER SDKDVV+++RLE ALR+IN
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  61    PELNNSAIEQAMREISIEKSPSLLENNRSFHEMITNGIEVEHYNDDGETINDLVYVFDFD  120
             ++++   IE+A++E+++EKSP+LLENN +FHE + NGIE+E+Y+D+G++I ++V ++DF+
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  121   NPGNNDFLAVNQLTVVNGDYKKRPDIVLFINGLPVVVIELKNSTNESVGIEDGYHQIETY  180
              P NNDFLAVNQLT+VNGDYKKRPDIVLFINGLP+VVIELKNSTNE+VG+EDGYHQ+ETY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  181   KMRTPQLFNHNAVLVTSDGINTKAGSLTADYDRFMTWRTKDGKTEDSSTFRSLDILIHGM  240
             KMR PQLF  N VLVTSDGINTKAGSLTA+YDRFMTWR+KDG+TE S+ + SLD+LIHGM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  241   LNKEVLLDLIRHFVLFQDDGKGNIVKILAAYHQYYAVNKAVDRAMEATSEHGDGKGGVIW  300
             LN E LLDLIR FVLFQDDGKG+I KILAAYHQYYAVNKAVDRA+ A+SE+GDGKGGVIW
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  301   HTQGSGKSLTMVFFSGKLIQKLNNPTLVVVTDRNDLDNQLYGTFVKSKGRSGKGLLRQTP  360
             HTQGSGKSLTMVFFSGKLIQ LNNPTLVVVTDRNDLDNQLY+TFVKSKGRSGKGLLRQTP
Sbjct  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  361   KQAESRKELKELLSVESGGIVFTTMQKFEPEEGQVTMDALTERKNVVVMADEAHRTQYGF  420
             KQAE+RKELK LLSVESGGIVFTTMQKFEPE+ + TM ALTERKNV+VMADEAHRTQYGF
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  421   KATYNEKGEGIKYGYAKYLRDALPNASFVGFTGTPVSSTDKNTQMVFGNYIDVYDMTQSV  480
             +A Y++KGEGIKYGYAKYLRDALPNA+FVGFTGTPV+STDKNTQMVFGNYIDVYDMTQ+V
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  481   EDGSTVKIYYESRIIPLNLPTDLDIDDAYDVITSGQEEDTKSRLKSKWSRIEALSGAEKR  540
              DGSTVKIYYESR+IPLNLP  LD+D+AY+ IT +QEED K RLKSKWSRIEAL+GA  R
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  541   VHALATDIINHFETRQKAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDNKGVIKVV  600
             V+ALA DII+HFETRQ+AMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD+KGVIKVV
Sbjct  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600

Query  601   MTGSSSDPQNFQKHIGPKKRRNLLENRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK  660
             MTGSSSDP +FQ+HIGPKKRRNLLE+RMKDV+DELQLVIVRDMWLTGFDVPSMHTMYIDK
Sbjct  601   MTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDK  660

Query  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTDSDREQTGIDTEKALE  720
             PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT+SD+ QT+IDT+KA+E
Sbjct  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720

Query  721   LMLMKYDIIQDMLYNHDYSDFESEDQLNRYNAISNTMDYIIGLGEKERERFVTTVTELSK  780
             LML+KYD+IQDMLYN DYS F+S+ + +RY +ISNTMDY+IGLGE ER+RF+ TVTEL+K
Sbjct  721   LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780

Query  781   AFALCATEEAAQELNSEIAFLKAVKSGLVKLLAPPSEGSKRKKTPAEIEAEINQLISKSV  840
             AFALCATE +AQELN EIAF+KAVK+GLVKLL PP EG K +KTPAE+EAEINQL+S+SV
Sbjct  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEG-KTRKTPAEVEAEINQLVSQSV  839

Query  841   VTEEVVDIYQTLGIENPDISILSDDFLKDVEGLQQKNVAVELLNKLLKGQVKSLMKTNAT  900
             VTE+V+D+YQTLG+E+PD+SILSDDFLKDVEGL+QKNVAVELLN+LLKGQVKSLMKTNAT
Sbjct  840   VTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNAT  899

Query  901   VSKRFSEMLSKSIQKYNNRSIEASKVIEELIQMAKEINQEKERGKELGLSTEEIAFYDAL  960
             VSKRFSEML++SI+KYN+RSIE+SKVIEELIQ+AK+I+QE++RG+ELGL+++EIAFYDAL
Sbjct  900   VSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL  959

Query  961   ASHETAKEAMGDKELRAIAHELTKTVKNNMSVDWSKRESAKAKMRVQVRRLLKKNGYPPD  1020
             ASHETAKEAMGDKELRAIAHELTKTVK+NM+VDWSKR+SAKAKMRV VRRLLKK GYPPD
Sbjct  960   ASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPD  1019

Query  1021  LQKMAVEQVVEQAELMASQQ  1040
             LQKMAVEQVVEQAELMA++Q
Sbjct  1020  LQKMAVEQVVEQAELMANNQ  1039

6) SAA6159_00056 in NC_017338


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score = 1457 bits (5530),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 844/1040 (82%), Positives = 975/1040 (94%), Gaps = 1/1040 (0%)

Query  1     MSFQFSEDDLEQVALKWFEGLGYSVKNGRDSSDNGIMNERESDKDVVFDDRLEAALRRIN  60
             M+FQF+EDDLEQVAL W+++LGY  K+G + S  ++  ER SDKDVV+++RLE ALR+IN
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  61    PELNNSAIEQAMREISIEKSPSLLENNRSFHEMITNGIEVEHYNDDGETINDLVYVFDFD  120
             ++++   IE+A++E+++EKSP+LLENN +FHE + NGIE+E+Y+D+G++I ++V ++DF+
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  121   NPGNNDFLAVNQLTVVNGDYKKRPDIVLFINGLPVVVIELKNSTNESVGIEDGYHQLETY  180
              P NNDFLAVNQLT+VNGDYKKRPDIVLFINGLP+VVIELKNSTNE+VG+EDGYHQLETY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  181   KMRIPQLFNHNAVLVTSDGVNTKAGSLTADYDRFMTWRTKDGKTEDSSTFRSLDILIHGM  240
             KMRIPQLF  N VLVTSDG+NTKAGSLTA+YDRFMTWR+KDG+TE S+ + SLD+LIHGM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  241   LNKDVLLDLIRHFVLFQDDGKGNIVKILAAYHQYYAVNKAIDRAIEATSEHGDGKGGVIW  300
             LN + LLDLIR FVLFQDDGKG+I KILAAYHQYYAVNKA+DRA+ A+SE+GDGKGGVIW
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  301   HTQGSGKSLTMVFFSGKLIQKLNNPTLVVVTDRNDLDNQLYGTFVKSKGRSGKGLLRQTP  360
             HTQGSGKSLTMVFFSGKLIQ LNNPTLVVVTDRNDLDNQLY+TFVKSKGRSGKGLLRQTP
Sbjct  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  361   KQAESRKELKELLSVESGGIVFTTMQKFEPEEGQVTMDALTDRKNVVVMADEAHRTQYGF  420
             KQAE+RKELK LLSVESGGIVFTTMQKFEPE+ + TM ALT+RKNV+VMADEAHRTQYGF
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  421   KATYDEKGQGIKYGYAKYLRDALPNASFVGFTGTPVSSTDKNTQMVFGNYIDVYDMTQSV  480
             +A YD+KG+GIKYGYAKYLRDALPNA+FVGFTGTPV+STDKNTQMVFGNYIDVYDMTQ+V
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  481   EDGSTVKIYYESRIIPLNLPTDLDIDEAYDVITSGQEEDTKSRLKSKWSRIEALSGAEQR  540
              DGSTVKIYYESR+IPLNLP  LD+DEAY+ IT +QEED K RLKSKWSRIEAL+GA  R
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  541   VHALATDIINHFETRQKAMKGKGMIVTMSRRIAVDLYDEIVRLKPEWHSDDDDKGVIKVV  600
             V+ALA DII+HFETRQ+AMKGKGMIVTMSRRIAVDLYDEI+RLKPEWHSDDDDKGVIKVV
Sbjct  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600

Query  601   MTGSSSDPQNFQKHIGPKKRRNLLENRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK  660
             MTGSSSDP +FQ+HIGPKKRRNLLE+RMKDV+DELQLVIVRDMWLTGFDVPSMHTMYIDK
Sbjct  601   MTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDK  660

Query  661   PMKGHNLMQAIARVNRVFIDKPGGLIVDYVGIAESLKEALKEYTDSDREQTGIDTDKALE  720
             PMKGHNLMQAIARVNRVF DKPGGLIVDYVGIAESLKEALKEYT+SD+ QT+IDTDKA+E
Sbjct  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720

Query  721   LMLMKYDIIQDMLYNHDSSDFESEDQLNRYNAISNTMDYIIGLGENERERFVTTVTELSK  780
             LML+KYD+IQDMLYN D S F+S+ + +RY +ISNTMDY+IGLGE+ER+RF+ TVTEL+K
Sbjct  721   LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780

Query  781   AFALCATEEAAQELNSEIAFLKAVKSGLVKLLAPPSEGSKRKKTPAEIEAEINQLISKSV  840
             AFALCATE +AQELN EIAF+KAVK+GLVKLL PP EG K +KTPAE+EAEINQL+S+SV
Sbjct  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEG-KTRKTPAEVEAEINQLVSQSV  839

Query  841   VTEEVVDIYQTLGIENPDISILSDDFLKDVEGLQQKNVAVELLNKLLKGQVKSLMKTNTT  900
             VTE+V+D+YQTLG+E+PD+SILSDDFLKDVEGL+QKNVAVELLN+LLKGQVKSLMKTN+T
Sbjct  840   VTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNAT  899

Query  901   VSKRFSEMLSKSIQKYNNRSIEASKVIEELIQMAKEINQEKERGKELGLSTEEIAFYDAL  960
             VSKRFSEML++SI+KYN+RSIE+SKVIEELIQ+AK+I+QE++RG+ELGL+++EIAFYDAL
Sbjct  900   VSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL  959

Query  961   ASHETAKEAMDDKELRAIAHELTKTVKNNMSVDWSKRESAKAKMRVQVRRLLKKYGYPPD  1020
             ASHETAKEAM+DKELRAIAHELTKTVK+NM+VDWSKR+SAKAKMRV VRRLLKKYGYPPD
Sbjct  960   ASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPD  1019

Query  1021  LQKMAVEQVVEQAELMASQQ  1040
             LQKMAVEQVVEQAELMA++Q
Sbjct  1020  LQKMAVEQVVEQAELMANNQ  1039

7) SABB_01782 in NC_021670


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score = 1175 bits (4456),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 720/729 (99%), Positives = 729/729 (100%), Gaps = 0/729 (0%)

Query  1     MVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELK  60
             MVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELK
Sbjct  311   MVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELK  370

Query  61    SLLSVESGGIVFTTMQKFEPEQNETTMSALTERKNVIVMADEAHRTQYGFNAKYDDKGEG  120
             SLLSVESGGIVFTTMQKFEPEQNETTM+ALTERKNVIVMADEAHRTQYGFNAKYDDKGEG
Sbjct  371   SLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEG  430

Query  121   IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYY  180
             IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYY
Sbjct  431   IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYY  490

Query  181   ESRIIPLNLPQNLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQ  240
             ESR+IPLNLPQ+LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQ
Sbjct  491   ESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQ  550

Query  241   HFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTS  300
             HFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTS
Sbjct  551   HFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTS  610

Query  301   FQRHIGPKKRRNLLEKRMKDMNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQA  360
             FQRHIGPKKRRNLLEKRMKD++DELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQA
Sbjct  611   FQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQA  670

Query  361   IARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQ  420
             IARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQ
Sbjct  671   IARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQ  730

Query  421   DMLYNLDYSKFNSEKKSERYYAISDTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPT  480
             DMLYNLDYSKFNS+KKSERYY+IS+TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPT
Sbjct  731   DMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPT  790

Query  481   AQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQT  540
             AQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQT
Sbjct  791   AQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQT  850

Query  541   LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN  600
             LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN
Sbjct  851   LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN  910

Query  601   SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMG  660
             SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMG
Sbjct  911   SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMG  970

Query  661   DKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE  720
             DKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE
Sbjct  971   DKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE  1030

Query  721   QAELMASNQ  729
             QAELMA+NQ
Sbjct  1031  QAELMANNQ  1039

8) SAMSHR1132_00490 in NC_016941


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score = 1170 bits (4436),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 712/748 (96%), Positives = 737/748 (99%), Gaps = 3/748 (0%)

Query  1    NLLENNLTFHENLINGIEVEDYDDEG-SIVEIVKIVDFEHPQNNNFLAVNQFTVVNGDYT  59
            NLLENNLTFHENLINGIE+EDYDDEG SIVEIVKI+DFE PQNN+FLAVNQ+T+VNGDY 
Sbjct  82   NLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYK  141

Query  60   KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVVVTSDGIN  119
            KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEV+VTSDGIN
Sbjct  142  KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGIN  201

Query  120  TKVGSLTANYDRFMTWRSKDGETESSSSLASLDVLIHGMLNPETLLDLIRYFVLFQDNGK  179
            TK GSLTANYDRFMTWRSKDG+TESS++LASLDVLIHGMLNPETLLDLIRYFVLFQD+GK
Sbjct  202  TKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQDDGK  261

Query  180  GHISKILAAYHQYYAVNKAVDRALLASSGRGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM  239
            GHISKILAAYHQYYAVNKAVDRALLASS +GDGKGGVIWHTQGSGKSLTMVFFSGKLIQM
Sbjct  262  GHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM  321

Query  240  LNNPTLVVITDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESDGIV  299
            LNNPTLVV+TDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVES+GIV
Sbjct  322  LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIV  381

Query  300  FTTMQKFEPEQNETTMASLTERKNVFVMADEAHRTQYGFNANYDDRGEGIKYGYAKYLRD  359
            FTTMQKFEPEQNETTMA+LTERKNV+VMADEAHRTQYGFNA+YDD+GEGIKYGYAKYLRD
Sbjct  382  FTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRD  441

Query  360  ALPNATFVGFTGTPVASTDKNTQMVCGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ  419
            ALPNATFVGFTGTPVASTDKNTQMV GNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ
Sbjct  442  ALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ  501

Query  420  NLDLDEAYNDITEDQKEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKA  479
            +LDLDEAYNDITEDQ EDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMK+
Sbjct  502  SLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKG  561

Query  480  KGMIVTMSRRIDVDLYDEIIRLKPEWHLDDDDKGVIKVVMTGSSSDPASFQRHIGPKKRH  539
            KGMIVTMSRRI VDLYDEIIRLKPEWH DDDDKGVIKVVMTGSSSDP+SFQRHIGPKKR+
Sbjct  562  KGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRR  621

Query  540  NLLEKHMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDK  599
            NLLEK+MKDV+DELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDK
Sbjct  622  NLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDK  681

Query  600  PGGLIVDYVGIAESLKEALKEYTESDQAQTTIDTDKAVELMLLKYDVIQDMLYNLDYSKF  659
            PGGLIVDYVGIAESLKEALKEYTESDQAQT+IDTDKAVELMLLKYDVIQDMLYNLDYSKF
Sbjct  682  PGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKF  741

Query  660  NSDKKSERYYTISNTMDYVIGLGE-ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF  718
            NSDKKSERYYTISNTMDYVIGLGE ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF
Sbjct  742  NSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF  801

Query  719  KAVKAGLVKLL-PPKEGKTRKTPAEIEA  745
            KAVKAGLVKLL PPKEGKTRKTPAE+EA
Sbjct  802  KAVKAGLVKLLQPPKEGKTRKTPAEVEA  829

9) SAT0131_02861 in NC_017347


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score = 1136 bits (4306),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 719/729 (99%), Positives = 728/729 (99%), Gaps = 0/729 (0%)

Query  1     MVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELK  60
             MVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELK
Sbjct  311   MVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELK  370

Query  61    SLLSVESGGIVFTTMQKFEPEQNETTMSALTERKNVIVMADEAHRTQYGFNakyddkggg  120
             SLLSVESGGIVFTTMQKFEPEQNETTM+ALTERKNVIVMADEAHRTQYGFNAKYDDKG G
Sbjct  371   SLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEG  430

Query  121   ikygyakyLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYY  180
             IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYY
Sbjct  431   IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYY  490

Query  181   ESRIIPLNLPQNLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQ  240
             ESR+IPLNLPQ+LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQ
Sbjct  491   ESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQ  550

Query  241   HFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTS  300
             HFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTS
Sbjct  551   HFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTS  610

Query  301   FQRHIGPKKRRNLLEKRMKDMNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQA  360
             FQRHIGPKKRRNLLEKRMKD++DELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQA
Sbjct  611   FQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQA  670

Query  361   IARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQ  420
             IARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQ
Sbjct  671   IARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQ  730

Query  421   DMLYNLDYSKFNSEKKSERYYAISDTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPT  480
             DMLYNLDYSKFNS+KKSERYY+IS+TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPT
Sbjct  731   DMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPT  790

Query  481   AQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQT  540
             AQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQT
Sbjct  791   AQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQT  850

Query  541   LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN  600
             LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN
Sbjct  851   LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN  910

Query  601   SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMG  660
             SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMG
Sbjct  911   SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMG  970

Query  661   DKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE  720
             DKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE
Sbjct  971   DKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE  1030

Query  721   QAELMASNQ  729
             QAELMA+NQ
Sbjct  1031  QAELMANNQ  1039

10) Clocl_3622 in NC_016627


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  992 bits (3759),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 577/1042 (56%), Positives = 824/1042 (80%), Gaps = 18/1042 (1%)

Query  8     EDELEQAALEWFEELGYETIFAPDISPGGDYPERSDYSDVILEERLKDALKRINPDLPQE  67
             ED+LEQ ALEW++ LGY+   + +IS  +  PER    DV+L+ERL  AL++IN+D+   
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  68    ALDDALHQILVPLNPALIDNNHLFQKMVTDGVNATFRANDGRIVSKQVRIFDFEKAENND  127
              ++ ALH++ +  +P L++NN  F+  + +G++     ++G+ +   V+I+DFE ++NND
Sbjct  67    FIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNND  126

Query  128   FLAVNQFTVIENRVEKRPDVVVFVNGIPLVVIELKNLANEDVEISDAYNQIQNYISTIPS  187
             FLAVNQ+T+++    KRPD+V+F+NG+P+VVIELKN +NE V + D+Y+Q++ Y   IP 
Sbjct  127   FLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  188   LFTYNAFAVISDGVNARAGTITADEDRFMMWRTIDGDEIAPLSRPQLEVLIKGMFDKERL  247
             LFT+N   V SDG+N++AG++TA+ DRFM WR+ DG+  ++ + + L+VLI GM++ E L
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETL  246

Query  248   LDIIKNFILFQTDGKDTY-KILAGYHQYHAVNKAVESTIRAAITEGDRKIGVVWHTQGSG  306
             LD+I+ F+LFQ DGK+   KILA+YHQY AVNKAV+ ++ A+  +GD K GV+WHTQGSG
Sbjct  247   LDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSG  306

Query  307   KSLSMVFYVGKLVLSKELNNPTIVVITDRNDLDDQLFSTFAKSKD-----LLRQEPVQAQ  361
             KSL+MVF+ GKL+  + LNNPT+VV+TDRNDLD+QL+STF KSK+     LLRQ P QA+
Sbjct  307   KSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAE  364

Query  362   DRADLRKLLTRESGGIIFTTIHKFAPEEKGDSVPVLTDRENVIVIADEAHRSQYGFRAEI  421
              R +L+ LL+ ESGGI+FTT++KF PE++  +++ LT+R NVIV+ADEAHR+QYGF A  
Sbjct  365   TRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKY  424

Query  422   VKGDTEADVKYGYAKYMRDALPNASFIGFTGTPISLADKDTRAVFGDYIDIYDMTRAVED  481
               +D   ++KYGYAKY+RDALPNA+F+GFTGTP++ +DK+T+ VFG+YID+YDMT+AV D
Sbjct  425   --DDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  482   GTTVRIFYESRIAKLELPDELKPViddeyeeiteyqeytqKEKLKTKWSRLEAIVGAEQR  541
             G+TV+I+YESR+  L+LP+ L   +D+ Y++ITE QE   K++LK+KWSR+EA+ GA  R
Sbjct  483   GSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  542   VKAIAKDIVEHFEKRLAAQETEVGKGMIVVMSRRIAIDLYKAIVELRPEWHSDDIDKGVI  601
             V A+AKDI++HFE R   Q++  GKGMIV MSRRIA+DLY  I+ L+PEWHSDD DKGVI
Sbjct  541   VEALAKDIIQHFETR---QQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  602   KVVMTGSSSDPKEWQPFIGTKATRERIAKRMKDNKDELKLVIVRDMWLTGFDVPSMHTMY  661
             KVVMTGSSSDP   Q  IG K  R+ + KRMKD  DEL+LVIVRDMWLTGFDVPSMHTMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  662   IDKPMQGHNLMQAIARVNRVFKEKQGGLIVDYIGIAENLKNALNDYTESDREKTGVDTEV  721
             IDKPM+GHNLMQAIARVNRVFK+K GGLIVDY+GIAE+LK+AL++YTESD+ +T++DT+ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDK  717

Query  722   AAAVLVEKYELIKELLHGHDYQKFFTGSASERMSAIVETIDYIIGLREERKNDYLKLVSE  781
             A  +++ KY++I+++L   DY KF ++  SER  +I +T+DY+IGL E+ ++ ++K V+E
Sbjct  718   AVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTE  777

Query  782   LSRAYSLCATTDIAEKLNLEVGFHKAVKSGIIKLIP---ENSRKKTAAEIEAQLNQLVSK  838
             L++A++LCAT   A+ LN E++F KAVK+G++KL+    E   +KT+AE+EA++NQLVS+
Sbjct  778   LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  839   SISSNEVIDVLDAVGLNKPNIAILSDEFLEEVRNMKQRNLAVELLNRLLKGKIKTFSKRN  898
             S+ +++VIDV +++GL++P+++ILSD+FL +V  +KQ+N+AVELLNRLLKG++K++ K N
Sbjct  838   SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  899   LVQSRKFSELLENAIRKYQNRTIETTQVILELIQLAKEINEAHKRGENTGLTEDELAFYD  958
                S++FSE+L N+I KY++R+IET++VI ELIQLAK+I++ ++RG++ GL  DE+AFYD
Sbjct  898   ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYD  957

Query  959   ALAENESAKEVMGDDILKQIARDLTEAIRKNISIDWSIRASVQAKMKMIIKRLLKRYGYP  1018
             ALA +E+AKE MGD  L+ IA++LT +++ N+++DWS R S +AKM++ ++RLLK+YGYP
Sbjct  958   ALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYP  1017

Query  1019  PDKTPKAVEIVMEQAKLMCQNE  1040
             PD    AVE V+EQA LM +N+
Sbjct  1018  PDLQKMAVEQVVEQAELMANNQ  1039

11) Desdi_0311 in NC_019903


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  989 bits (3747),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 566/1064 (54%), Positives = 834/1064 (79%), Gaps = 37/1064 (3%)

Query  4     NFCESHLEEATLEWFEELGYEIVFAPDIAPDGDYPERGDYGDITLNDRLKEALQRINPRM  63
             +F E +LE+ +LEW++ LGY+   + +I+  +  PER    D+ L++RL  AL++IN+ +
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  64    RPDALEDAFRQITIPQSPSLIMNNKAFQKMITDGIDVQVKQADASYRTEKVYVFDFEKPL  123
             +P  +E A++++T+ +SP+L+ NN +F+  + +GI+++  + ++    E V ++DFE P 
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  124   NNEFMVANQFTFIEHGVEKRPDVIAFVNGIPLVVMELKSASDENVDITDAYNQLQTYKMT  183
             NN+F+  NQ+T+++ +  KRPD++ F+NG+P+VV+ELK++++E V++ D+Y+QL+TYKM 
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  184   IPSLFTYNSFLVTSDGVNARAGTLTSDEDRFMAWRTIDGETTAPLSIPQLEVLIKGMFQR  243
             IP LFT+N  LVTSDG+N++AG+LT++ DRFM+WR+ DG+T ++ +++ L+VLI GM++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  244   DRFLDIIRHFVLFQSDSQDTI-KILAGYHQYHAVNKAIESTERATQESGDRRIGVIWHTQ  302
             + +LD+IR FVLFQ D+++ I KILA+YHQY AVNKA++ +  A+ E GD + GVIWHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  303   GSGKSLSMVFYAGKLVINEGLENPTIVIITDRNDLDDQLFGTFLKSKG-----ILRSTPV  357
             GSGKSL+MVF++GKL+  + L+NPT+V++TDRNDLD+QL++TF+KSKG     +LR TP 
Sbjct  304   GSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  358   QATDRTHLRDLLNNRTSGGIIFTTIHKFAPVAKEAKEECELDRAAEATALYRTEDMVLTD  417
             QA  R +L+ LL+   SGGI+FTT++KF P  +E+                      LT+
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAA------------------LTE  402

Query  418   RKNVIVMADEAHRSQYGFEAEIMKGDDEANVKYGYAKYMRDSLPNASYIGFTGTPVELTD  477
             RKNVIVMADEAHR+QYGF+A    +D    +KYGYAKY+RD+LPNA+++GFTGTPV  TD
Sbjct  403   RKNVIVMADEAHRTQYGFNAKY--DDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTD  460

Query  478   KNTRAVFGDYIDVYDMTRAVEDGTTVKIFYESRIAKLELPEELKPKVDTEYDEITEYQEY  537
             KNT+ VFG+YIDVYDMT+AV DG+TVKI+YESR+  L+LP+ L   +D  Y++ITE QE 
Sbjct  461   KNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEE  518

Query  538   TQKEKLKSKWARLEAIVGASERVKQIAKDIVEHFEKREQAQENAGGKAMIVAMSRRIAID  597
               K++LKSKW+R+EA+ GA  RV  +AKDI++HFE R+QA     GK+MIV+MSRRIA+D
Sbjct  519   DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMK---GKGMIVTMSRRIAVD  575

Query  598   LYQEIVTIRPEWHSDDLMAGKIKVVMTGASSDPAEWQKFIGKKASRETLAKRMKDKNDEL  657
             LY+EI+ ++PEWHSDD   G IKVVMTG+SSDP+  Q+ IG K  R+ L KRMKD +DEL
Sbjct  576   LYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDEL  635

Query  658   KLVIVRDMWLTGFDVPSMHTMYIDKPMQGHNLMQAIARVNRVFKEKQGGLIVDYIGIAEN  717
             +LVIVRDMWLTGFDVPSMHTMYIDKPM+GHNLMQAIARVNRVFK+K GGLIVDY+GIAE+
Sbjct  636   QLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAES  695

Query  718   LKEALAQYTESDKKTTGVDTEVAGQELLIRHDLIKELLHGHDYSKFFTGKPSEKMQAIVE  777
             LKEAL +YTESD+  T++DT+ A + +L++ D+I+++L   DYSKF ++K SE+  +I +
Sbjct  696   LKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISN  755

Query  778   TMDYIIGLREDRKNDYIKLVTEMARAYSLCATTDIAESLNVEVGFHKAVKASLVKMI---  834
             TMDY+IGL ED ++ +IK VTE+++A++LCAT   A+ LN E++F KAVKA+LVK++   
Sbjct  756   TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPP  815

Query  835   SNDNRKKTTTQLDSELNQLISKSISSNEVIDILSSVGLSKPNIAILSEEFLEEVKGMKQK  894
              +++ +KT +++++E+NQL+S+S+ +++VID+  ++GL +P+++ILS++FL +V G+KQK
Sbjct  816   KEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQK  875

Query  895   NLAVELLNRLLKGGIKTFSRRNLVQSKKFSELLDAAIRKYQNRAIETTQVIMELIELAKQ  954
             N+AVELLNRLLKG +K++ + N   SK+FSE+L+ +I KY++R+IET++VI ELI+LAK+
Sbjct  876   NVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKD  935

Query  955   ISEAEKRGESTGLTPDELAFYDALADNDSAREIMGDEILKQIARDLTQSIKKNISVDWAI  1014
             I + ++RG+  GL +DE+AFYDALA +++A+E MGD  L+ IA++LT+++K N++VDW+ 
Sbjct  936   IKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSK  995

Query  1015  RESVQAKMKMTIKRLLKKYGYPPDKTAKAVDIVMEQTKLMCQNE  1058
             R+S +AKM+++++RLLKKYGYPPD    AV+ V+EQ+ LM +N+
Sbjct  996   RDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANNQ  1039

12) hsdR in NC_010337


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  965 bits (3656),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 579/1048 (56%), Positives = 830/1048 (80%), Gaps = 25/1048 (2%)

Query  7     FCESELEEAALEWFQELNYETAFAPELSPGGDYPEREDYGDVILQDRLRDALQRINPHLP  66
             F E +LE+ ALEW+Q L Y+   + E+S  +  PER    DV+L++RL  AL++IN+++ 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  67    PEAIEDAYRQIAIPQSPSLLMNNKAFHKLITDGIDI-SYRHKG-GAVRYAKAMVFDFDPC  124
             P  IE A +++++ +SP+LL NN +FH  + +GI+I  Y + G + V   K + F++   
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYP--  122

Query  125   RVDNNDWLVVNQFTVIENRVEKRPDMVVFVNGIPLVVIELKSSSDEEVGISEGFNQLQTY  184
               +NND L VNQ+T+++    KRPD+V+F+NG+P+VVIELK+S++E VG+ +G++QL+TY
Sbjct  123   --QNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  185   KQTIPSLFTYNAFMVTSDGINARAGTLTADEDRFMMWRTIDGDDVAPLSIPQLEVLIKGM  244
             K  IP LFT+N  +VTSDGIN++AG+LTA+ DRFM WR+ DG+  ++ +++ L+VLI GM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  245   FDKRRLLDIVRHFITFQTDGRDTY-KLLAGYHQYHAVNKAVDSTVRATLEKGDRRIGVIW  303
             ++   LLD++R F+ FQ DG++   K+LA+YHQY AVNKAVD ++ A+ E+GD + GVIW
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  304   HTQGSGKSLSMVFYTGKLVLAEELDNPTIVVITDRNDLDDQLFGAFARSKD-----LLRQ  358
             HTQGSGKSL+MVF++GKL+  + L+NPT+VV+TDRNDLD+QL+++F +SK+     LLRQ
Sbjct  301   HTQGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  359   TPVQAKdradlrrllereaggIIFTTIHKFAPEAKGDRIPVLTDRKNVIVIADEAHRSQY  418
             TP QA  R +L+ LL  E+GGI+FTT++KF PE +   ++ LT+RKNVIV+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQY  418

Query  419   GFGADVVEGKDEADIKYGYAKYMRDALPNASYIGFTGTPIELTDKNTRAVFGDYIDIYDM  478
             GF A   ++K+E+ IKYGYAKY+RDALPNA+++GFTGTP+  TDKNT+ VFG+YID+YDM
Sbjct  419   GFNAKY-DDKGEG-IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDM  476

Query  479   TRAVEDGTTVKIYYESRIAKLDLPDEMKPVVDeeyeeitehqeyeqkeKLKSKWSRLEAI  538
             T+AV DG+TVKIYYESR+  L+LP+ +   +DE Y++ITE+QE + K++LKSKWSR+EA+
Sbjct  477   TQAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEAL  534

Query  539   VGADERIQVVARDIVEHFEKRQAAQETAVGKAMIVVMSRRIAVDLYHAIVTLRPEWHSDD  598
              GA  R++ +A+DI++HFE RQ A     GK+MIV MSRRIAVDLY+ I+ L+PEWHSDD
Sbjct  535   AGAKPRVEALAKDIIQHFETRQQAMK---GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDD  591

Query  599   LDRGVIKVVMTGGSADPKEWQPFIGTKATRDRLAKRMKDNDDELKLVIVRDMWLTGFDVP  658
              D+GVIKVVMTG+S+DP   Q  IG K  R+ L KRMKD DDEL+LVIVRDMWLTGFDVP
Sbjct  592   DDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVP  651

Query  659   SMHTMYIDKPMGGHNLMQAIARVNRVFREKQGGLVVDYIGIAENLKAALRDYTESDKQTT  718
             SMHTMYIDKPM GHNLMQAIARVNRVF++K GGL+VDY+GIAE+LK AL++YTESD+  T
Sbjct  652   SMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQT  711

Query  719   GVDTDQAAEVMLEKYDLIQEMLHGHDYSKFFTGKASDRMQAIVETIDFVIGL-RERKDEY  777
             ++DTD+A E+ML KYD+IQ+ML   DYSKF ++K S+R  +I +T+D+VIGL  + ++ +
Sbjct  712   AIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRF  771

Query  778   MRLVTELSKAYSLCATTDAAEKLNLEVGFHKAVKAGIIKMIP---ENTKKRTGAHLDAQL  834
             ++ VTEL+KA++LCAT  +A+ LN E++F KAVKAG++K++    E   ++T A+++A++
Sbjct  772   IKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI  831

Query  835   NQLISKSISSNEVIDILQAVGLQKPNIAILSDEFLEEVRVMKQKNLAVELLNRLLKGKVK  894
             NQL+S+S+ +++VID+ Q++GL++P+++ILSD+FL +V  +KQKN+AVELLNRLLKG+VK
Sbjct  832   NQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVK  891

Query  895   AFARKNLILSKKFSEMLEQAIKKYQNRTIETTQVIIELIELAKEVNKAHGRGENTGLTED  954
             ++ + N  +SK+FSEML ++I+KY++R+IET++VI ELI+LAK++++ + RG++ GL  D
Sbjct  892   SLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSD  951

Query  955   ELAFYDALADNESARELMGDEILKQIARDLTQQIKRNMTVDWSLRSSVQARMKMIIKRLL  1014
             E+AFYDALA +E+A+E MGD  L+ IA++LT+ +K NM VDWS R S +A+M++ ++RLL
Sbjct  952   EIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLL  1011

Query  1015  KKYNYPPDNREKALSTVMEQARLLCVSE  1042
             KKY YPPD +  A+  V+EQA L+  ++
Sbjct  1012  KKYGYPPDLQKMAVEQVVEQAELMANNQ  1039

13) DCF50_p1408 in NC_018867


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  962 bits (3644),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 568/1045 (55%), Positives = 819/1045 (79%), Gaps = 19/1045 (1%)

Query  7     FCESELEQATLEWFEELNYDIIFAPDIAPDGEYAEREDYSDVILQERLKEALARINPTLP  66
             F E +LEQ +LEW++ L YD   + +I+  +  +ER    DV+L+ERL  AL +IN+ + 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  67    EDALEDAFRRILIPQSPSLLMNNKAFQKMVTDGVDVSYRQKDGTIKYTQAKVFDFEKVNN  126
                +E A++ + + +SP+LL NN +F+  + +G+++   + +G       K++DFE  +N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  127   NDWVAANQFTVVENRVDKRPDVVVFVNGIPLVVIELKNASNEDVDISDGYNQLQTYKMSI  186
             ND +A NQ+T+V+    KRPD+V+F+NG+P+VVIELKN++NE V++ DGY+QL+TYKM I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  187   PSLFTYNSFMVTSDGINARAGTLTSDEDRFMAWRTIEGDEVASLSIPQLEVLIKGMFDKE  246
             P LFT+N  +VTSDGIN++AG+LT++ DRFM+WR+ +G+  +S +++ L+VLI GM++ E
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  247   RFLDIIKQFILFQTDGSDTF-KILAGYHQYHAVNKAVESTERATMETGDRRIGVVWHTQG  305
              +LD+I+ F+LFQ DG + + KILA+YHQY AVNKAV+ +  A+ E GD + GV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQG  304

Query  306   SGKSLSMVFYAGKLVISEELENPTIVIITDRNDLDDQLFTTFAKSKD-----LLRGEPQQ  360
             SGKSL+MVF++GKL+  + L+NPT+V++TDRNDLD+QL++TF KSK+     LLR  P+Q
Sbjct  305   SGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  361   AEDRGHLRELLNNRTSGGIIFTTIHKFAPEDKGDSVPVLTDRKNVIVMADEAHRSQYGFG  420
             AE R +L+ LL+   SGGI+FTT++KF PE++  +++ LT+RKNVIVMADEAHR+QYGF 
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFN  421

Query  421   ADVVKSETEASVKYGYAKYMRDSLPNASYIGFTGTPVELTDKNTRAVFGDYIDVYDMTRA  480
             A     +   ++KYGYAKY+RD+LPNA+++GFTGTPV  TDKNT+ VFG+YIDVYDMT+A
Sbjct  422   AKY--DDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  481   VQDETTVKIFYESRIAKLDLPEDLKPKIDTEYDEITEYQEYNQKEKLKSRWSRLEAIVGA  540
             V D +TVKI+YESR+  L+LP+ L   +D  Y++ITE QE + K++LKS+WSR+EA+ GA
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  541   EKRIQVVAKDIVEHFEKRQAAQEYEGGKAMIVAMSRRIAIDLYKEIVLLRPDWHSDELME  600
               R++ +AKDI++HFE RQ A     GK+MIV+MSRRIA+DLY EI+ L+P+WHSD+   
Sbjct  538   KPRVEALAKDIIQHFETRQQAMK---GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDK  594

Query  601   GKIKVVMTGASSDPADWQKFIGTKATRKALDKRMKDKNDELQLVIVRDMWLTGFDVPSMH  660
             G IKVVMTG+SSDP+  Q+ IG K  R+ L+KRMKD +DELQLVIVRDMWLTGFDVPSMH
Sbjct  595   GVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMH  654

Query  661   TMYIDKPMQGHNLMQAIARVNRVFKEKQGGLVVDYIGIAENLKEALSKYTESDKKTTGVD  720
             TMYIDKPM+GHNLMQAIARVNRVFK+K GGL+VDY+GIAE+LKEAL  YTESD+  T++D
Sbjct  655   TMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAID  714

Query  721   TDVAAELLLEKHDLIKELLHGHDYSKFFTGSAREKMQAIVETMDYIIGLREDRKNDYIKL  780
             TD A EL+L K D+I+++L   DYSKF ++   E+  +I +TMDY+IGL ED ++ +IK 
Sbjct  715   TDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKT  774

Query  781   VTELTRAYSLCATTDIAERLNVEIGFHKSVKAGIVKMI---TDNTKKKTNSQLDSELNQL  837
             VTEL +A++LCAT   A+ LN EI+F K+VKAG+VK++    +   +KT +++++E+NQL
Sbjct  775   VTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQL  834

Query  838   ISKSISSDEVIDILEAVGLQKPNIAILSDEFLEEVKGMKQKNLAVELLNRLLKGSIKAFS  897
             +S+S+ +++VID+ +++GL++P+++ILSD+FL +V G+KQKN+AVELLNRLLKG +K++ 
Sbjct  835   VSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLM  894

Query  898   KRNLVQSKKFSELLENALKKYQNRTIETTQIIMELIELAKEINEAKKRGENSGLTADELA  957
             K N   SK+FSE+L N+++KY++R+IET+++I ELI+LAK+I++ ++RG++ GL +DE+A
Sbjct  895   KTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIA  954

Query  958   FYDALSFDEAAKGELSDDILKQIARDLTDSLKRNMSVDWNIRSSVQSkmkmiikrllkkY  1017
             FYDAL+ +E+AK  ++D  L+ IA++LT ++K NM+VDW+ R S ++KM++ ++RLLKKY
Sbjct  955   FYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKY  1014

Query  1018  GYPQDKRDQATETVLEQARLMCVNE  1042
             GYP D +  A E V+EQA LM  N+
Sbjct  1015  GYPPDLQKMAVEQVVEQAELMANNQ  1039

14) Amico_0451 in NC_014011


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  945 bits (3580),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 554/1049 (53%), Positives = 803/1049 (77%), Gaps = 40/1049 (3%)

Query  20    GYEVVFAPDIAPEGTYPERTYYSDVVLTERLKEALARINPDLPDDALEDGFRQIMFPQSP  79
             GY+   + +I+  +  PER    DVVL ERL  AL +IN+D+    +E +++++ + +SP
Sbjct  22    GYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSP  81

Query  80    SLIMNNKTFQKMITDGIDVQVKQEDGGYRTEKAYIFDLEAPSNNDFLVANQFTVVEHDKE  139
             +L+ NN TF+  + +GI+++  +++G    E   I+D+E P NNDFL  NQ+T+V+ D  
Sbjct  82    NLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYK  141

Query  140   KRPDIVVFVNGIPLVVIELKNASDENVDITDAFNQLQTYKKTIPSLFTYNSFTVISDGVN  199
             KRPDIV+F+NG+P+VVIELKN+++E V++ D+++QL+TYK  IP LFT+N   V SDG+N
Sbjct  142   KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGIN  201

Query  200   ARAGTLTSNEDRFMAWRTIDGDDVAPLCIPQLEVLIKGMFLKDRFLDIIRHFVLFQSDGK  259
             ++AG+LT+N DRFM+WR+ DG+  ++  ++ L+VLI GM+  + +LD+IR FVLFQ DGK
Sbjct  202   TKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQDDGK  261

Query  260   -EIKKILAGYHQYHAVNKALQSTQRATMEQGDRRVGVIWHTQGSGKSLSMVFYAGKLVID  318
              +I KILA+YHQY AVNKA++ +  A+ EQGD + GVIWHTQGSGKSL+MVF++GKL+  
Sbjct  262   GHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLI--  319

Query  319   EELENPTIVVITDRNDLDDQLFSTFLKSEE-----LLRNTPVQAQDRVHLRELLNNRTSG  373
             + L+NPT+VV+TDRNDLD+QL+STF+KS       LLR+TP QA+ R +L+ LL+   SG
Sbjct  320   QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESG  378

Query  374   GIIFTTIQKFAPFTNETNGEVIDFNRWGRVAENSSPYTANTMLTDRRNVVVIADEAHRSQ  433
             GI+FTT+QKF P  NET                     + + LT+R+NV+V+ADEAHR+Q
Sbjct  379   GIVFTTMQKFEPEQNET---------------------TMAALTERKNVIVMADEAHRTQ  417

Query  434   YGFGAEIVMGKTEADVKYGYAKYMRDSLPNASYIGFTGTPVELTDKNTRVVFGDYIDIYD  493
             YGF A    +    ++KYGYAKY+RD+LPNA+++GFTGTPV  TDKNT++VFG+YID+YD
Sbjct  418   YGFNAKY--DDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYD  475

Query  494   MTRAVEDGTTVKIFYESRIAKLDLPEEMKPQIDSEYEEITEYQEYSQKERLKSKWARLEA  553
             MT+AV DG+TVKI+YESR+  L+LP+ +  ++D  Y++ITE QE   K+RLKSKW+R+EA
Sbjct  476   MTQAVADGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEA  533

Query  554   IVGTEQRIKQIAKDIVEHFEKRDLAQENEGGKGMIVAMSRRIAIDLYKEIVALRPDWHSD  613
             + G+  R+  +AKDI++HFE R   Q+   GKGMIV+MSRRIA+DLY EI+ L+P+WHSD
Sbjct  534   LAGAKPRVEALAKDIIQHFETR---QQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSD  590

Query  614   DLMSGKIKVVITGSSSDPSDWQAFIGSKADRETLAKRMKDRNDELKLVIVRDMWLTGFDV  673
             D   G IKVV+TGSSSDP+  Q  IG+K  R+ L KRMKD +DEL+LVIVRDMWLTGFDV
Sbjct  591   DDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDV  650

Query  674   PSMHSMYVDKPMSGHNLMQAIARVNRVFKEKQGGLVVDYIGIAENLKNALAQYTESDKKT  733
             PSMH+MY+DKPM GHNLMQAIARVNRVFK+K GGL+VDY+GIAE+LK+AL +YTESD+  
Sbjct  651   PSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ  710

Query  734   TGVDTEVASQVLLEKYDLIKELLHGHSYEKFFTGRQSEKMQAITETMDFIIGLREDRKND  793
             T++DT+ A +++L KYD+I+++L    Y KF ++++SE+  +I++TMD++IGL ED ++ 
Sbjct  711   TAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQR  770

Query  794   YINLVTEMARAYSLCATTDTAETLNVEVGFHKAVRACLHKIM---SDGSKKKTTSQLDNE  850
             +I+ VTE+++A++LCAT  TA+ LN E++F KAV+A L K++    +G  +KT ++++ E
Sbjct  771   FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAE  830

Query  851   LNQLISKAISSNEVVDILSSVGLSKPNIAILSDEFLEEVKGMRQKNLAVELLNRLLKGSI  910
             +NQL+S+++ +++V+D+  ++GL +P+++ILSD+FL +V G++QKN+AVELLNRLLKG +
Sbjct  831   INQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQV  890

Query  911   KNFSRRNLVQSKRFSEMLEASIRKYQNRTIETTQVIMELIELAKEISGAEKRGESTGLTS  970
             K++ + N   SKRFSEML  SI KY++R+IET++VI ELI+LAK+I   ++RG+  GL S
Sbjct  891   KSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNS  950

Query  971   DELAFYDALADNESARDVMGDEILMQIAKDLTLSIRRNISVDWAIRENVQAKMKMDIKRL  1030
             DE+AFYDALA +E+A++ MGD  L  IA +LT +++ N++VDW+ R++ +AKM++ ++RL
Sbjct  951   DEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRL  1010

Query  1031  LKRYNYPPDKTPQAVDTVIAQAKLMCQKE  1059
             LK+Y YPPD    AV+ V+ QA LM +++
Sbjct  1011  LKKYGYPPDLQKMAVEQVVEQAELMANNQ  1039

15) Cyan7822_0695 in NC_014501


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  919 bits (3482),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 514/1042 (50%), Positives = 791/1042 (76%), Gaps = 26/1042 (2%)

Query  1     MKPNFSESVVEDATLAWFELLGYTVCHASEL-------DRQSYSDIILTDSLQTALKKIN  53
             M+ +F+E  +E+ +L W++ LGY    ++E+       +R+S  D++L + L+ AL+KIN
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  54    PQIPSETLQEVIKKITRSDTPNLIENNLRFHKLLTDGVDVE-YQQDGRTKYDKVWLIDFK  112
             ++I +  ++  +  +T   +PNL+ENNL FH  L +G+++E Y+++G++  + V +IDF 
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  113   HPENNQYLAANQLTVTEGKNTRRPDVVIFINGLPIAVIELKNPADENATITGAFNQLQTY  172
              P+NN++LA NQLT+ +G   +RPD+V+FINGLPI VIELKN+++E   + ++++QL+TY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  173   KQEIPSLFSTNELLIISDGTEARIGTLTADWERFAPWRTVDGENIAPKRVAELETLIRGV  232
             K  IP LF+ NE+L+ SDG +++ G+LTA+ +RF  WR+ DG+  ++  +A L+ LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  233   FPPKTLLDILQSFIVFETDGDT-ITKKLAGYHQYHAVNKAITATLEATHPQGDKKVGVVW  291
             + P TLLD+++ F++F+ DG   I+K LA+YHQY AVNKA+  +L A+  QGD K GV+W
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  292   HTQGSGKSLTMAFYAGKIIQQPEMANPTLVILTDRNDLDDQLFNTFSLCTD-----LLRQ  346
             HTQGSGKSLTM F++GK+IQ   + NPTLV++TDRNDLD+QL++TF    +     LLRQ
Sbjct  301   HTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  347   TPTQAESREQLQELLKVASGGVIFTTIQKFSPE-YGNQYPLLSNRRNIILIADEAHRSQY  405
             TP QAE+R +L+ LL V SGG++FTT+QKF PE      + L++R+N+I++ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQY  418

Query  406   GLEAKVINKQEEAYISYGFAKYLRDALPNASFIGFTGTPIEAGDINTPAVFGDYIDIYDI  465
             G++AK  +K E   I YG+AKYLRDALPNA+F+GFTGTP+ + D NT  VFG+YID+YD+
Sbjct  419   GFNAKYDDKGEG--IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDM  476

Query  466   QRAVEDEATVKIYYEGRLAKIDLEPSERPNIDPNFeevtedeetttkeklkskWARLEAL  525
              +AV D +TVKIYYE+R+  ++L  ++  ++D  ++++TED+E   K++LKSKW+R+EAL
Sbjct  477   TQAVADGSTVKIYYESRVIPLNL--PQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEAL  534

Query  526   VGAEKRINQIAQDIVTHFENRLASIDGKAMIVCMSRRICVDLYNAIIKLKPDWHHDEDKG  585
              GA  R++ +A+DI+ HFE R  ++ GK+MIV MSRRI VDLY+ II+LKP+WH D+D  
Sbjct  535   AGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDK  594

Query  586   GIIKVVMTGSASDDPLFQPHIRNKKRRKDLAKRFKNPNDEMKLVIVRDMWLTGFDAPCLH  645
             G+IKVVMTGS+SD   FQ HI  KKRR+ L KR K+ +DE++LVIVRDMWLTGFD P +H
Sbjct  595   GVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMH  654

Query  646   TLYVDKPMKGHGLMQAIARVNRVFKDKPGGLVVDYLGIADQLKTALNDYTKSDRDDTGIP  705
             T+Y+DKPMKGH LMQAIARVNRVFKDKPGGL+VDY+GIA+ LK AL++YT SD+ +T+I 
Sbjct  655   TMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAID  714

Query  706   VNEALAVCFEKYEIVKAMYHGFNYQPFFTGTPAQRLNTIPAALDHILGI-EDGKERYVKG  764
              + A+ + + KY++++ M   ++Y  F ++  ++R  TI+ ++D ++G+ ED ++R++K 
Sbjct  715   TDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKT  774

Query  765   VTELSKAFALVSSTDEAIAIRDEVGFFQAIKAAMVK--HTTTHGG--KSPEEIDAAVRQI  820
             VTEL+KAFAL ++   A  + DE++FF+A+KA++VK  +   +G   K+P E++A + Q+
Sbjct  775   VTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQL  834

Query  821   VSLAVASDEVIDIFAAAGLKNPNIAILSDEFLEEIKGLPYKNVALEILRKLINDDIRSRL  880
             VS +V +++VID++ + GL +P+++ILSD+FL ++ GL  KNVA+E+L +L++++++S +
Sbjct  835   VSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLM  894

Query  881   RRNLIQSRSFREMLENTIKRYQNRSLETAQVINELIELAKDIREAYKRGENLGLTEDEIA  940
             + N   S+ F EML N+I++Y++RS+ET++VI+ELI+LAKDI++  +RG++LGL  DEIA
Sbjct  895   KTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIA  954

Query  941   FYDALEVNDSAVKVLGDDTLKAIARDLVIAIRNNLTIDWTVKETVRAKLRVTIKRLLKKY  1000
             FYDAL  +++A   +GD  L+AIA++L  ++++N+ +DW+ +++ +AK+RV+++RLLKKY
Sbjct  955   FYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKY  1014

Query  1001  GYPPDKQEKATLTVLQQAELLS  1022
             GYPPD Q  A   V++QAEL++
Sbjct  1015  GYPPDLQKMAVEQVVEQAELMA  1036

16) hsdR1 in NC_010163


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  906 bits (3431),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/1016 (52%), Positives = 779/1016 (77%), Gaps = 19/1016 (1%)

Query  6     FFESDVEEATLEWFQELGYQTEFGPNIAPEGPYPERASYTDVILIERLKESLFRLNKSLP  65
             F E D+E+ +LEW+Q LGY+   G +I+  +  PER S  DV+L ERL  +L ++N  + 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  66    KSAIEDAIRQITIPKQIALIENNRTFHKMITDGVDVSYHDQTGRLVHSQVRIFDFNEPTN  125
                IE A++++T+ K   L+ENN TFH  + +G+++   D+ G+ +   V+I+DF+ P N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  126   NDYLVVNQFTVVESRVEKRPDvvvfvnglplvvfELKTASDENVSIKSAFRQVKNYQQSI  185
             ND+L VNQ+T+V++   KRPD+V+F+NGLP+VV+ELK +++E V++  +++Q+  Y+  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  186   SSLFVYNSFNVISDGLHAKAGTITSDEDRFMTWRTTDGKEIAPTTIPQLETLIKGMFDKK  245
             + LF +N   V SDG+++KAG++T++ DRFMTWR+ DG+  ++  ++ L+ LI GM++  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  246   RFLDIIKQYVLFQKHESGYI-KILAGYHQYHAVNTALEKTYEATSAHGDRRIGVIWHTQG  304
              +LD+I+ +VLFQ +  G I KILA+YHQY AVN A++++  A+S +GD + GVIWHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQG  304

Query  305   SGKSLSMVFYAGKLVISQELSNPTIVIITDRNDLDDQLFLTFSKSSD-----LLRSIPDQ  359
             SGKSL+MVF++GKL+  Q L+NPT+V++TDRNDLD+QL+ TF KS +     LLR  P Q
Sbjct  305   SGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  360   AASREHLKELLNGRDSGGIIFTTIQKFSPDDN-GNVTALTNRKNVIVLADEAHRSQYGFS  418
             A +R +LK LL+  +SGGI+FTT+QKF P++N   ++ALT+RKNVIV+ADEAHR+QYGF+
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFN  421

Query  419   AKVVKSQDEAFEKYGYAKYLRDSLPNASYIGFTGTPIETTDKNTRAVFGDYIDIYDMSRA  478
             AK     +    KYGYAKYLRD+LPNA+++GFTGTP+ +TDKNT+ VFG+YID+YDM++A
Sbjct  422   AKYDDKGEGI--KYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  479   VEDKTTVKIFYESRIAQIDFTEEYDLIDENYDEITEYQEETQKEGLKRKWARLEAIVGSE  538
             V D +TVKI+YESR+  +++ +  DL DE Y++ITE QEE  K+ LK KW+R+EA+ G+ 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLDL-DEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  539   SRIKTVAKDIVEHFEKRQATMETPVGKAMIVAMSRRIAVELYEAIVKLRPEWHSDDVLKG  598
             +R+ ++AKDI++HFE RQ +M    GK+MIV+MSRRIAV+LY+ I++L+PEWHSDD  KG
Sbjct  539   PRVEALAKDIIQHFETRQQAMK---GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKG  595

Query  599   KIKVVMTGSSSDPESWQKHIGTKQTRETLSERMKDNNDELELVIVRDMWLTGFDVPSMHT  658
              IKVVMTGSSSDP S Q+HIG K+ R+ L  RMKD +DEL+LVIVRDMWLTGFDVPSMHT
Sbjct  596   VIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHT  655

Query  659   MYVDKPMQGHNLMQAIARVNRVFKEKQGGLVVDYIGIADRLKKALMQYTDNDREQVGVDT  718
             MY+DKPM+GHNLMQAIARVNRVFK+K GGL+VDY+GIA+ LK AL +YT++D+ Q ++DT
Sbjct  656   MYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDT  715

Query  719   ALAVSVMLEKLDIVRDILHQHDYSKYFGDRYSEKLQVIMETIDFVIGLREERKNDFLKFV  778
               AV +ML K D+++D+L + DYSK+ +D+ SE+   I +T+D+VIGL E+ ++ F+K V
Sbjct  716   DKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTV  775

Query  779   SELSKAYSLCSTTEEAEKHNVEIGFFKSVRAGIIKL---STDTSKKKSVDQLDSELNQLI  835
             +EL+KA++LC+T   A+  N EI+FFK+V+AG++KL   + +   +K+  ++++E+NQL+
Sbjct  776   TELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLV  835

Query  836   SKSLKSDKVIDIMAEIGLSKPDISILSDEFLEEFNKMNHKNVAIELLKRLIKGKLKMIAR  895
             S+S+ ++ VID+   +GL +PD+SILSD+FL + + +++KNVA+ELL+RL+KG++K + +
Sbjct  836   SQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMK  895

Query  896   KTIVQSRQFSELLEDALAKYQARLIDSTVVIQELIELAKDITKAAESGKESGLTEDEFAF  955
                  S++FSE+L +++ KY++R I+++ VI+ELI+LAKDI +  + G+E GL  DE+AF
Sbjct  896   TNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAF  955

Query  956   YEALSSNMTAKEVMGTDILKEIAKELTKKIKSSTTIDWNIRDSVRAKIRFEIKVLL  1011
             Y+AL+S+ TAKE MG   L+ IA ELTK +K +  +DW+ RDS +AK+R  ++ LL
Sbjct  956   YDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLL  1011

17) hsdR in NC_015634


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  904 bits (3423),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 555/1051 (53%), Positives = 799/1051 (77%), Gaps = 46/1051 (4%)

Query  35    GYDYVFGPDISCDGERPERKDYRTVILEDRVKDALFKHNRHLPQEAIEEAFRQIIAFNSP  94
             GYDY  G +IS  +  PERK  + V+L++R+  AL K N ++    IE A++++   +SP
Sbjct  22    GYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSP  81

Query  95    SLEENNRHFHKLITEGIDV-SFHQDGLSRSMKAFLIDFEEPAKNDFLVVNQFTVVEKE-E  152
             +L ENN  FH  + +GI++  ++++G S      +IDFE P +NDFL VNQ+T+V+ +  
Sbjct  82    NLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYK  141

Query  153   RRPDLIIFINGIPFVVIELKSASDENVSIDNAYAQIQTYKRDIPSLFYYNAFCILSDGIN  212
             +RPD+++FING+P+VVIELK++++E V+++++Y Q++TYK  IP LF +N   + SDGIN
Sbjct  142   KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGIN  201

Query  213   AKAGTITASQERFMNWRTVDGENIEPLEVPQYEVLLRGMLAKDRLIDIIENFILFQESKE  272
             +KAG++TA+ +RFM WR+ DG+   +  ++  +VL++GML  + L+D+I  F+LFQ+   
Sbjct  202   TKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQD---  258

Query  273   EERDENGKKIGERKTIAKILAAYHQYFAVKKAVEKTKIATSENGDRKIGVIWHTQGSGKS  332
                       + +  I+KILAAYHQY+AV+KAV+++ +A+SE+GD K GVIWHTQGSGKS
Sbjct  259   ----------DGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKS  308

Query  333   FSMVFYTAQLVKQLNNPTIVVITDRNDLDDQLFSTFSKSKD-----ILRQTPKQADVRKL  387
             ++MVF++++L++ LNNPT+VV+TDRNDLD+QL+STF KSK+     +LRQTPKQA+ RK 
Sbjct  309   LTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRK-  367

Query  388   SEEQKKQQANEKSKEINGLYDLLNDRESGGIIFTTIQKFKPEEGE--MPVLTDRKNVIVI  445
                           E+++L  +    ESGGI+FTT+QKF PE+ E  M+ LT+RKNVIV+
Sbjct  368   --------------ELKSLLSV----ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVM  409

Query  446   ADEAHRSQYGFSAKTDTKTGEVKYGYAKYLRDALPNASFIGFTGTPIELEDKSTPAVFGN  505
             ADEAHR+QYGF+AK D K   +KYGYAKYLRDALPNA+F+GFTGTP+   DK+T  VFGN
Sbjct  410   ADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGN  469

Query  506   YIDIYDMTRAVEDKATVKIYYENRIIRLEANEEELAKIDeefeeitedqeeSVREKYKSK  565
             YID+YDMT+AV D +TVKIYYE+R+I L+  +     +DE +++ITEDQEE V+++ KSK
Sbjct  470   YIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSK  527

Query  566   WSRLEAIVGSPNRIKQLAKDIVNHYEEKAKAIDGKAMIVCMSRRICVALYNEIVKLRPDW  625
             WSR+EA+ G+  R+  LAKDI++H+E + +A+ GK+MIV MSRRI V LY+EI++L+P+W
Sbjct  528   WSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEW  587

Query  626   HSDDDDKGKIKVVMTGSAGDDDFLQPHIGGKKRRDLLAKRMKDNSDELKIVIVRDMWLTG  685
             HSDDDDKG IKVVMTGS++D   +Q HIG KKRR+LL KRMKD  DEL++VIVRDMWLTG
Sbjct  588   HSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTG  647

Query  686   FDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKSGGVVVDYIGILESLKKALNQYTESD  745
             FDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDK+GG++VDY+GI ESLK AL++YTESD
Sbjct  648   FDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESD  707

Query  746   KKTTGIDTSAAVAVMKEKLEILQDMMHGFDYSAYMGSSQAGRIRAITGGMNVIFGKSEKE  805
             +  T+IDT  AV +M  K +++QDM+  +DYS + +  ++ R  +I+  M+ ++G +E E
Sbjct  708   QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDE  767

Query  806   QKEFKKTATELAKAHSLCAATDEGKAAALEVSYFKAVKASLNKLQE--KQPK-RKTKKEI  862
             ++ F KT TEL+KA +LCA+   ++    E+++FKAVKA+L KL +  K+ K RKT  E+
Sbjct  768   RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  863   EARVNQLLERSIISEEVVDVFEVMGLKHPDVSILSEEFLEEVRSYEYKNLAVEMLKKLLE  922
             EA +NQL+ +S+++E+V+DV++ +GL +PD+SILS++FL +V +   KN+AVE+L++LL 
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  923   GNIKTMERRNLVKSQKYSEKLKQSLNKYKNQAITNAEVIEELIQMAkdmkkereeekdLG  982
             G++K++ + N   S+++SE L +S+NKY++++I  + VIEELIQ+AKD+K+E++  ++LG
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  983   LNEDEIAFYDALTSESIVKELMEDEVLRKIANELTQAIRRNMTIDWHVRKSARAGMRRII  1042
             LN DEIAFYDAL+S+   KE M D  LR IA+ELT++++ NM +DW  R SA+A MR  +
Sbjct  948   LNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAV  1007

Query  1043  KRLLKKYDYPPEQAKKALDTVMRQAELMAEH  1073
             +RLLKKY+YPP+  K A++ V+ QAELMA++
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

18) Acid345_3755 in NC_008009


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  898 bits (3400),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 491/1041 (48%), Positives = 779/1041 (75%), Gaps = 30/1041 (2%)

Query  7     FTESVVEEAALAWLEGLGYTVLSGPSISAGEIAAERIEADYSDVILERRVRQTLQRLNPN  66
             F E  +E+ AL WL++LGY    G  IS   +++ER      DV+L+ R+ ++L+++N++
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSD--KDVVLHERLEKALRKINSD  62

Query  67    LPPEALDDAFRRLTHDNETSLIANNHAFHQILVNGVTVEYNRADGSIGGALVRVIDFEAA  126
             + P  ++ A++ LT ++  +L+ NN +FH+ L+NG+ +E    +G     +V++IDFE +
Sbjct  63    IHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYP  122

Query  127   ENNDWLAVNQFTIVEGQYTRRPDVLIFINGLPIALLELKNAADENATIWTAFKQIQTYKS  186
             +NND LAVNQ+TIV+G+Y +RPD+++FINGLPI ++ELKN+++E   +  ++ Q++TYK 
Sbjct  123   QNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  187   QIPSLFAYNELLVISDGMEARVGSLTADTERFMPWRTIGGEELAPTSLPQLQVLIEGLFE  246
             +IP LF++NE+LV SDG++++ GSLTA+ +RFM WR+ +G+  ++ +L+ L+VLI+G+++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLN  242

Query  247   RRRLLDFIRHFVVFEDEGRGVLIKKIAGYHQFHAVNRALRETLSASAEGGDRRVGVVWHT  306
                LLD+IR FV+F+D+G+G + K +A+YHQ+ AVN+A+  +L AS+E GD + GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  307   QGSGKSLTMAFYAGRLVLEPTLQNPTIVVITDRNDLDDQLYGTFSRC-----HELLRQAP  361
             QGSGKSLTM F++G+L+    L+NPT+VV+TDRNDLD+QLY+TF +        LLRQ+P
Sbjct  303   QGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  362   LQALDREHLRSLVQVSSGGVIFTTIQKFMPAEGDKY-PQLTDRRNVIVVADEAHRSQYDF  420
              QA  R +L+SL+ V SGG++FTT+QKF P + +   + LT+R+NVIV+ADEAHR+QY+F
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  421   ID-----------GFARHMRDALPHASFIGFTGTPIEKTDVNTRSVFGDYISIYDIQRAV  469
                          G+A+ +RDALP+A+F+GFTGTP+  TD NT+ VFG+YI +YD+ +AV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  470   EDGATVPIYYESRLAKLELPASEKPKVDTAFEEATEGEEVDRKEKLRTKWAAVEAVVGTE  529
              DG+TV IYYESR+  L+LP S    +D A+++ TE++E D K++L++KW+ +EA+ G+ 
Sbjct  481   ADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  530   KRLNTVAKDLVKHFEERLEVMDGKAMIVCMSRRICVDLYNEIMKLRPTWHSENDDAGVLK  589
              R++++AKD+++HFE R + M GK+MIV MSRRI VDLY+EI++L+P WHS++DD GV+K
Sbjct  539   PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  590   IVMTGSATDGPEWQQHIRDKRRREALGKRFKNAKDPFKIVIVRDMWLTGFDVPSLHTMYA  649
             +VMTGS++D    Q+HI  K+RR+ L KR K+  D +++VIVRDMWLTGFDVPS+HTMY 
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  650   DKPMRAHGLMQAIARVNRVFKDKPGGLVVDYLGIAHELKLALATYTESGGKGQTALPQEE  709
             DKPM++H LMQAIARVNRVFKDKPGGL+VDY+GIA+ LK AL  YTES +++QTA+  + 
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDK  717

Query  710   AVARMIEKYEICRGLFHGFDWSMWLTGTSAQKLAILPNAQEHVLK-QEDGKNRLLKAVSD  768
             AV  M+ KY++ ++++  +D S   ++  +++   ++N+ + V+   ED ++R++K+V++
Sbjct  718   AVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTE  777

Query  769   LSKAFALAVPHDAALKIRDDVGFFQAIRSVLAK-----TASQQYRPEQELDNAIRQIISR  823
             L+KAFAL   + +A  + D+++FF+A+++ L K       ++  +   E++  I Q++S+
Sbjct  778   LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  824   AMSSGEVVDIFAAAGLKKPDISILSEEFLREVSNIPQKNLAVELLRKLLNDEIKSRSRRN  883
             ++ + +V+D++ + GL +PD+SILS++FL++V  + QKN+AVELL +LL++++KS  + N
Sbjct  838   SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  884   VVKGKLFSAMLESSIHKYQNRAIQAAQVIEELIGLAKEMREESAKGEELGLSEDEVAFYD  943
                +K FS ML +SI+KY++R+I++++VIEELI LAK++++E  +G+ELGL+ DE+AFYD
Sbjct  898   ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYD  957

Query  944   ALEVNDSAVKVLGEPTLKTIARELVDTVRRNTTIDWAVRENIRANLRVLVKRILRKYGYP  1003
             AL  +++A   +G+  L++IA+EL  TV+ N  +DW+ R++ +A++RV V+R+L+KYGYP
Sbjct  958   ALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYP  1017

Query  1004  PDKQEKATLTVLEQAEALSAN  1024
             PD Q  A   V+EQAE ++ N
Sbjct  1018  PDLQKMAVEQVVEQAELMANN  1038

19) Cylst_5220 in NC_019757


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  891 bits (3374),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 529/1047 (51%), Positives = 792/1047 (76%), Gaps = 23/1047 (2%)

Query  1     MSATFTESTVEQATLDWLEELGYTPLNGAEIAPDIPHSERQEYNDVVLINRLQTALEIIN  60
             M+  F E  +EQ +L+WL+ LGY   +G EI+     +ER+  +DVVL +RL+ AL  IN
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  61    PQIPFDAIQDTIKKITRTETPVLEENNRRFHQYLTEGVDVE-YQQHGQTQYKKLWLIDFD  119
             ++I    I+ ++  +T   +P L ENN  FH+ L +G+++E Y+++GQ+    + +IDF+
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  120   EIDNNDWLAVNQFTVIENKNNRRPDVIIFINGLPIAVIELKNAVKEYATIKGAFNQLQTY  179
               +NND LAVNQ+T+++   ++RPD+++FINGLPI VIELKN+ +E   + ++++QL+TY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KKDIPCLFSYNEILVISDVVNARVGTLTADWERFMPWRSVDGENIFPKGQSELETIIKGI  239
             K  IP LF++NE+LV SD +N++ G+LTA+ +RFM WRS DG+   + G + L+ +I G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  240   FNKTTILDILQYFIVFEVDQDTIIKKI-AGYHQYHAVNKAITATIKATRLNGDQKVGVVW  298
             +N  T+LD+++YF++F+ D    I KI A+YHQY AVNKA+  ++ A+  +GD K GV+W
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  299   HTQGSGKSLTMAFYAGKLIQEPDMRNPTLVILTDRNDLDDQLFNTFSSCAD-----LLRQ  353
             HTQGSGKSLTM F++GKLIQ   + NPTLV++TDRNDLD+QL++TF    +     LLRQ
Sbjct  301   HTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   TPVQAENRESLTALLQVAAGGIVFTTIQKFAPE-TGNEYPELSPRRNIVLIADEAHRSQY  412
             TP QAE R  L +LL V +GGIVFTT+QKF PE      + L+ R+N++++ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQY  418

Query  413   GLKAKVVQKDDAAYIKYGYAKYLRDAIPNASFVGFTGTPISQTDKNTAALFGNYIDIYDI  472
             G++AK  +K+++  IKYGYAKYLRDA+PNA+FVGFTGTP++ TDKNT  +FGNYID+YD+
Sbjct  419   GFNAKYDDKGEG--IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDM  476

Query  473   QRAVEDEATVKIYYEGRLAKLDLEPSERPKIDPefeeitedeeltskeKLKSRWARLEAL  532
              +AV D +TVKIYYE+R+  L+L  ++   +D  +++ITED+E   K++LKS+W+R+EAL
Sbjct  477   TQAVADGSTVKIYYESRVIPLNL--PQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEAL  534

Query  533   VGAEKRIAQIAKDIVAHFENRTAAPELRDGKGMIVCMSRRICADLYNAITQLKPEWHSED  592
              GA  R+  +AKDI+ HFE R  A     GKGMIV MSRRI  DLY+ I +LKPEWHS+D
Sbjct  535   AGAKPRVEALAKDIIQHFETRQQA---MKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDD  591

Query  593   DSQGFLKVVMTGSAADEEKMQPHIRNKKRRKDLAKRFKKADDPFKLVIVRDMWLTGFDAP  652
             D +G +KVVMTGS++D    Q HI  KKRR+ L KR K  DD ++LVIVRDMWLTGFD P
Sbjct  592   DDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVP  651

Query  653   SLHSLYVDKPMQGHNLMQAIARVNRVFKDKPGGLVVDYLGIAEQLKEALKDYTESDRGET  712
             S+H++Y+DKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIAE LKEALK+YTESD+++T
Sbjct  652   SMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQT  711

Query  713   GIPTELALAVLQEKYEVVQGMYHGFNYQKFFTGKPTERVSMIPAALNHILGL-EDGKQRY  771
             +I T+ A+ ++  KY+V+Q+M   ++Y KF ++K +ER   I+ +++ ++GL ED +QR+
Sbjct  712   AIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRF  771

Query  772   IKAVTELSQAFALVSSTDEAIAIRDEVGFFQAIKAAMVK--HTTING---KSPEDVDAAV  826
             IK+VTEL++AFAL ++   A  + DE++FF+A+KA++VK  +   +G   K+P +V+A +
Sbjct  772   IKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI  831

Query  827   RQIVSKAIASDQVIDIFASAGLNKPNIAVLSDEFLEEVRGLPYRNVALEALQKLINDQIK  886
              Q+VS+++ +++VID++ + GL++P++++LSD+FL +V GL  +NVA+E L++L+++Q+K
Sbjct  832   NQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVK  891

Query  887   VSSRKNLIQSRSFREMLENTIKRYQNRAIETAQVINEFIELVKAMREAQKRGENLGLTED  946
                + N   S+ F EML N+I++Y++R+IET++VI+E+I+L K +++ Q+RG++LGL  D
Sbjct  892   SLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSD  951

Query  947   ETAFYDALEVNDSAVISLGDNTLKAIARDLVKAIRSNLTIDWTVKENvraklrvtvkrll  1006
             E AFYDAL  +++A  ++GD+ L+AIA++L K+++ N+ +DW+ +++ +AK+RV+V+RLL
Sbjct  952   EIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLL  1011

Query  1007  kkYGYPPDKQEKATATVLEQAELLCKD  1033
             KKYGYPPD Q  A   V+EQAEL+ ++
Sbjct  1012  KKYGYPPDLQKMAVEQVVEQAELMANN  1038

20) F7308_0305 in NC_015696


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  886 bits (3357),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 526/1046 (51%), Positives = 779/1046 (75%), Gaps = 32/1046 (3%)

Query  2     KEDNIENYAIDLFKSEGYNYIYAPDVAPDTDNPIRATFSDVVLENLLRDKLLEINPQIQP  61
             +ED++E+ A++ ++S GY+Y  + +++  +  P R +  DVVL++ L   L  IN++I+P
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    NLIDDAIKKLLRTSSDELLADNELIHQYITQGIKVE-YTKDGATRGEIVKLIDFDNSSNN  120
              +I+ A+  L    S +LL +N  +H+ + +GI +E Y  +G +  EIVK+IDF+ + NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  121   DFTVMNQFTIIENDNNKRPDLIIFVNGLPLVVIELKNATDENATIKSAFDQIRTYKATIP  180
             DF  +NQ+TI++ D +KRPD+++F+NGLP+VVIELKN+T+E   +  +++Q+ TYK  IP
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   SLFRYNAICVISDGLEAKAGTISADISRFMTWKSSDGIAESSKLVPQLETLILGMLNPIT  240
              LF +N + V SDG+++KAG+++A+  RFMTW+S DG +ESS  ++ L+ LI GMLNP T
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPET  245

Query  241   LLDLIKNFIVFEKDKKQDEKGQTQVFTIKKLAAYHQYYAVNKALERTLQASHKDGDKKGG  300
             LLDLI+ F++F+    +D KG+      K LAAYHQYYAVNKA++R+L AS  +GD KGG
Sbjct  246   LLDLIRYFVLFQ----DDGKGHIS----KILAAYHQYYAVNKAVDRALLASSEQGDGKGG  297

Query  301   VVWHTQGSGKSLSMVFYTGKAVLALNNPTIVVITDRNDLDDQLFDTFA-----ASKSLLR  355
             V+WHTQGSGKSL+MVF++GK +  LNNPT+VV+TDRNDLD+QL+ TF      ++K+LLR
Sbjct  298   VIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLR  357

Query  356   QTPVQANTREDLKRLLKVESGGIVFTTIQKFQPEEGNVY-DTLSARDNIIVVADEAHRTQ  414
             QTP QA+TR +LK LL VESGGIVFTT+QKF+PE+ +    +L+ R N+IV+ADEAHRTQ
Sbjct  358   QTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQ  417

Query  415   YGFSAKTVDDKDEQGNIIGKKTVYGFAKYLRDALPNATYLGFTGTPVEANDKNTPMVFGD  474
             YGF+AK     D++G+ I     YG+AKYLRDALPNAT++GFTGTPV + DKNT MVFG+
Sbjct  418   YGFNAKY----DDKGEGIK----YGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGN  469

Query  475   YVDIYDISQAIDDGATVPIYYESRLAKINLSEEGKELVKELDDEIGELDES--QKTKAKW  532
             Y+D+YD++QA+ DG+TV IYYESR+  +NL++ + +L    +D   + +E   Q+ K+KW
Sbjct  470   YIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SLDLDEAYNDITEDQEEDVKQRLKSKW  528

Query  533   TRLEALIGAENRIKEVANDIVNHFEARQEVCDGKAMIVAMSRRIAVRLYDEIIKLRPAWH  592
             +R+EAL GA  R+  +A+DI++HFE+RQ+   GK+MIV+MSRRIAV LYDEII+L+P WH
Sbjct  529   SRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWH  588

Query  593   DKDLDKGVIKVVMTASSSDGPEMEQHHTSKQQRRNLANRMKDTKDELKLVIVRDMWLTGF  652
               D DKGVIKVVMT+SSSD    ++H  +K++R  L +RMKD  DEL+LVIVRDMWLTGF
Sbjct  589   SDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGF  648

Query  653   DAPSMHTLYIDKPMQGHNLMQAIARVNRVYKDKPAGLVVDYLGIASDLKKALSFYSDSGG  712
             D PSMHT+YIDKPM+GHNLMQAIARVNRV+KDKP+GL+VDY+GIA  LK AL  Y++S +
Sbjct  649   DVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-D  707

Query  713   KGDPAQTQEKAVSLMLEKLEVVSQMFHGFDYEKYFDADTRQKLAIILEAEDFILGL-ENG  771
             +++ A   +KAV LML K +V+ +M+  +DY K+      ++   I ++ D+++GL E+ 
Sbjct  708   QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDE  767

Query  772   KKRFVNEVTALSKAFAIAMPHDEAVDAKDEIAFFQAIKARLAKF----DSTGTGKTDEQI  827
             ++RF++ VT L+KAFA+   +  A + +DEIAFF+A+KA L K+        T KT  ++
Sbjct  768   RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  828   ETAIRQVIDKALVTDQVIDIFDASGIKKPDISVLSDEFLAEVRDYKHKNIALETLKKLLN  887
             E+ I Q++ +++VT++VID++++ G+ +PD+S+LSD+FL +V + K+KN+A+E L++LL+
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  888   QEIKARSKTNLVQAKTLKEMLEDSIRRYHSKAISSVEFLDELINQAKEIKNMDTEYQKLG  947
              ++K+  KTN   +K + EML +SI +Y+S++I +   ++ELI+ AK+IK+ +   + LG
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  948   LTEYEYAFYTAVANNESAKEIMQTDKLRELAIELFNRLKSSASIDWTKKESVRAKLRVTV  1007
             L   E AFY A+A++E+AKE M    LR +A EL + +K + ++DW+K++S +AK+RV+V
Sbjct  948   LNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAV  1007

Query  1008  KRTLRQFGYPPDMQKIATDTVLKQAE  1033
             +R L+++GYPPD+QK+A + V+ QAE
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQAE  1033

21) hsdR in NC_015697


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  882 bits (3341),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 523/1046 (50%), Positives = 778/1046 (75%), Gaps = 28/1046 (2%)

Query  8     ESDVENLALDTLQKVGYDVYKSPSTTSPNPEIDKMRNNDHAVAVLTEKLQASLKKLNPGY  67
             E D+E++AL+ LQ +GYD YK  +  S  + +   R++D  V VL E+L+ +L+K+N++ 
Sbjct  7     EDDLEQVALEWLQSLGYD-YKKGNEISMTS-LTPERKSDKDV-VLHERLEKALRKINSDI  63

Query  68    PEEIYKEALRQLTRLADNPDMMVNNHYFHKLLIEGIRVKT-TVNGENRTEVLYPIDFDHV  126
                +   AL++LT L  +P+++ NN  FH  LI+GI +     +G++  E++  IDF+  
Sbjct  64    HPRFIEKALHELT-LEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYP  122

Query  127   GNNQFVATNQFTF-KGSHERRPDTTIFINGLPVVTFEFKDASNPNVSIENAYRQLQTYKA  185
              NN+F+A NQ+T+ +G   +RPD  +FINGLP+V +E+K+++N  V++E++Y+QL+TYK 
Sbjct  123   QNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  186   EIPEYLKYNEILIASDGINSRAGSLTAGFDRFMRWRAPK-NINVGDDLE-LETMIKYMLT  243
              IP+ + +NE+L++SDGIN++AGSLTA +DRFM WR+   + + + +L  L+ +I  ML 
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLN  242

Query  244   PKDLLNLIENFIIFETDGDNTI-KILAAYHQYYMVNKAVKAAKRTMADPNDKRIGVVWHT  302
             P  LL+LI  F++F+ DG   I KILAAYHQYY VNKAV  A  + ++  D + GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  303   TGSGKSLSMVFFASIVARKLNNPTMLVINDRNDLDDQLFDTFA-----AAHEFLRQAPEH  357
              GSGKSL+MVFF++ + + LNNPT++V+ DRNDLD+QL+ TF      ++  +LRQ+P +
Sbjct  303   QGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  358   AESRDELRKFMDKQAGEIIFSTIQKFSPDFESGETEMPVLTNRSDVIVIADEAHRTQYGL  417
             AE+R EL+ ++  ++G I+F+T+QKF P  E  ET M+ LT+R +VIV+ADEAHRTQYG+
Sbjct  363   AETRKELKSLLSVESGGIVFTTMQKFEP--EQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  418   KAKFTN--NGLRYGFAKYLRDALPNASFIGFTGTPISTADKSTVAVFGNYIDVYDITQAV  475
             +AK+ +  +G++YG+AKYLRDALPNA+F+GFTGTP++++DK+T  VFGNYIDVYD+TQAV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  476   NDHATVKIYYESHVFPLKLKS--DAQAKYQQLLKEANLDDDPNLEENTRRNREFSSLEAL  533
              D +TVKIYYES+V+PL+L    D +  Y+      ++ +D + + + R +   S +EAL
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYN------DITEDQEEDVKQRLKSKWSRIEAL  534

Query  534   AGAQPRLESIAKHFVNHFEARQKETFGKAMIVEMSRRNAVRLYNQIIKLRPEWDSDDLNK  593
             AGA+PR+E++AK++++HFE+RQ+   GK+MIV MSRR AV LY++II+L+PEW+SDD +K
Sbjct  535   AGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDK  594

Query  594   GKIKVVMTSSAADGPEMAKFQTSKADRRVLQKRMKDNNDELQIVIVVDMWLTGFDVPSMN  653
             G IKVVMT+S++D     +   +K  R +L+KRMKD +DELQ+VIV DMWLTGFDVPSM+
Sbjct  595   GVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMH  654

Query  654   TMYIDKPMKGHNLIQAIARVNRVFKDKDSALIVDYIGIAENLKEALNVYSTEDQGQVGIN  713
             TMYIDKPMKGHNL+QAIARVNRVFKDK ++LIVDY+GIAE+LKEAL+ Y+  DQ+Q +I+
Sbjct  655   TMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAID  714

Query  714   MQKALALLKEKYDIITNDFLYGVDYSGFDSEDGAVRLKITRRVANEILGEDEETQQKFLD  773
              +KA+ L+  KYD+I +D LY +DYS F+S+  + R        + ++G +E+ +Q+F+ 
Sbjct  715   TDKAVELMLLKYDVI-QDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIK  773

Query  774   VVTELQKAYALTSTQPEAQAYGKEIAFFKTVKVFIQKLKQPTTPVGSGK-HTDVKYQMQQ  832
              VTEL KA+AL +T+P AQ    EIAFFK+VK  + KL QP     + K  ++V  +++Q
Sbjct  774   TVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  833   LLDQSIISEPNVDIYNELGIKRQSIDLISDEFLQKVNSMPEQDVAITLLEKLLKGKIKAM  892
             L+ QS+++E  +D+Y+ LG+ +  + ++SD+FL+ V+++ +++VA+ LL++LLKG++K++
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  893   MKSNKVTSEKFEDMLQKSIDEYNQRGITSEIVIRKLIDMAKKINAEQEKGKDLGLSQEEI  952
             MK+N   S +F +ML +SI+ YN R+I +  VI  LI++AK I+ EQ++G++LGL+ +EI
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEI  953

Query  953   AFYDALADHKKAVEVLGEKKLHLIAQELVKLVKEEAGVDWEKRRNIQAKMRVAVKHLLRK  1012
             AFYDALA H  A E +G+K L+ IA+EL K VKE+ GVDW KR + +AKMRVAV++LL+K
Sbjct  954   AFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKK  1013

Query  1013  YGYPPDIAPEAVNTVVEQAELMATND  1038
             YGYPPD+   AV+ VVEQAELMA N+
Sbjct  1014  YGYPPDLQKMAVEQVVEQAELMANNQ  1039

22) Calni_0580 in NC_014758


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  876 bits (3318),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 506/1064 (48%), Positives = 776/1064 (73%), Gaps = 44/1064 (4%)

Query  19    SETEIENFAINLLKSQGYDYLFGGDIAPDGENPLRKSFEDVILFDRLKAALERINTNLPQ  78
             +E ++E+ A++ L+S GYDY  G +I+  +  P RKS  DV+L +RL  AL +IN+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  79    NAINDAIKQLTQIHTPDLIANNEIFHRMLTEGVKVL-YQKDGIERGDIVWLIDFKNPENN  137
               I+ A+ +LT   +P+L+ NN  FH  L +G+ +  Y+ +G    +IV +IDF  P+NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  138   DFLVVNQFTVIENRKNKRPDIVIFINGLPLLVIELKNPADENATIKSAYNQIQTYKQTIA  197
             DFL VNQ+T+++   +KRPDIV+FINGLP++VIELKN+++E   +  +Y+Q++TYK  I+
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  198   SLFTYNEILVISDGLKAKMGSLSAGYDRFMYWKTDDGTKEDSHLVSQLETMIKGLLNKET  257
              LFT+NE+LV SDG+++K GSL+A YDRFM W++ DG  E S  ++ L+ +I G+LN ET
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPET  245

Query  258   LIDYIRFFILFektkkedekeQTIIQMTKKIAGYHQYYAVNKAVESTIRAIGRNTSIVRE  317
             L+D IR+F+LF+         +   +++K +A+YHQYYAVNKAV+ ++            
Sbjct  246   LLDLIRYFVLFQD--------DGKGHISKILAAYHQYYAVNKAVDRAL------------  285

Query  318   DPATYGLPDVKTQPEGDKKAGVVWHTQGSGKSLSMLFYTGKIIQTINNPTIVVITDRNDL  377
                      + +  +GD K+GV+WHTQGSGKSL+M+F++GK+IQ +NNPT+VV+TDRNDL
Sbjct  286   ---------LASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDL  336

Query  378   DDQLFDTFA-----SATQILRQEPVQATSREHLKELLKIDSGGVVFTTIHKFWPENGNIY  432
             D+QL+ TF      S+  +LRQ P QA +R +LK LL ++SGG+VFTT++KF PE+ +  
Sbjct  337   DNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETT  396

Query  433   -ETLSYRDNIIVIVDEAHRTQYGFKAKVDKNSGDIKYGFAKYLRDALPNATYIAFTGTPI  491
               +L+ R N+IV+ DEAHRTQYGF+AK D ++ +IKYG+AKYLRDALPNAT+++FTGTP+
Sbjct  397   MAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPV  456

Query  492   EKTDRNTPAVFGNYIDIYDISNAVEDGSTVPIYYESRLVKIDLTEEGRKLIKEYEEELDE  551
               TD+NT  VFGNYID+YD+++AV DGSTV IYYESR++ ++L + +  L   Y++  ++
Sbjct  457   ASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SLDLDEAYNDITED  515

Query  552   KGFSELEKTKAKWTKLEALVGAKPRIKEVAKDIVSHFESRLEVMDGKGMIVTISRKTAAN  611
             +     ++ K+KW+++EAL GAKPR+  +AKDI+ HFE+R + M GKGMIVT+SR+ A +
Sbjct  516   QEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVD  575

Query  612   LYKEIVNLRPDWHSEELKKGKIKVVMTTSSSDEPEVSKFYLTKEERRILADRFKDPEDEL  671
             LY EI+ L+P+WHS++  KG IKVVMT SSSD     +    K  R +L  R KD +DEL
Sbjct  576   LYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDEL  635

Query  672   KLVIVVDMWLTGFDVPCLHTMYIDKPMKGHTLIQAIARVNRVYNDKTGGLIVDYIGIASD  731
             +LVIV DMWLTGFDVP +HTMYIDKPMKGH L+QAIARVNRV++DK GGLIVDY+GIA  
Sbjct  636   QLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAES  695

Query  732   LKDALSFYAESGGKGDPVKLQEKAISIMLEKLEVVRDMFYGFDYKRFFTADTSQKLNIIL  791
             LK+AL  Y+ES+    ++   +KA+ +ML K +V++DM+Y +DY +F +   S++   I 
Sbjct  696   LKEALKEYTESDQAQTAID-TDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTIS  754

Query  792   EAQDFILGL-ENGKKRYIDAVVALSKAFSIAVPHPKAMEVKEEVAFFQAVKSGLIKF---  847
             ++ D+++GL E+ ++R+I +V  L+KAF++   +P A E+++E+AFF+AVK+GL+K+   
Sbjct  755   NTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  848   --NTNEEQAAENYETVIKQIVDKAIYSKGVIDIFDAAGLKKPEISILSDEFLEEIKGMKH  905
               + +  +++ + E+ I+Q+V +++ + +VID++++ GL +P++SILSD+FL ++ G+K+
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  906   KNLAIETLKKLINDQIKGRIKINLVKSKSLMKSLEDLIKKYNNKLLTAAQVIDELIKLAK  965
             KN+A+E L++L+++Q+K+ +K N   SK +   L + I+KYN++ + +++VI+ELI+LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  966   EIKESDKEPQEMGLSDYEYAFYCAVAENESAKQLMGKEKLRELATVLYKKVKENTTIDWT  1025
             +IK+ ++  +E+GL+  E AFY A+A +E+AK+ MG   LR +A  L K VKEN  +DW+
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWS  994

Query  1026  IRESARSKLKVIVKRTLRQYGYPPDMQELATETVLKQAELIASE  1069
              R+SA++K++V V+R L++YGYPPD+Q +A E V+ QAEL+A++
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

23) BTH_I2740 in NC_007651


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  872 bits (3303),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 490/1055 (47%), Positives = 764/1055 (73%), Gaps = 34/1055 (3%)

Query  1     MAF-LSEAAVEQALLDQLRALDYSIEREEDIGPDGHRPERESHDGVVLKKRFEDAVARLN  59
             M F ++E  +EQ  L+ L++L+Y   + ++I+  +  PER S+ +VVL  R+E A+ ++N
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  60    PGLPLEARQDAARRVMQSELPSLLEENRRIHKLMIEGVDVEYYADDGTLTAGKVALINFE  119
             +++     + A + +     P+LLE+N  +H  +I+G+++E Y D+G      V +I+FE
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  120   QPEQNDWLAVSQFVVVAGHYNRRPDVVVFVNGLPLGVVELKAPGSGNATLVGAFNQLQTY  179
              P++ND LAV+Q+ +V G+Y++RPD+V+F+NGLP+ V+ELK + +    + ++++QL+TY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KKQIPALFNTNALLVTSDGITARVGSLSADLERFMPWRTTDGTDVAPKGAPELSTLIEGV  239
             K +IP LF  N +LVTSDGI ++ GSL+A+ +RFM WR+ DG   ++ G + L  LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  240   FEHRRLLDLLCHFTAFGETGSG-LAKVIAGYHQFHAVRHAVNSTVAASSPEGNKRVGVIW  298
             ++   LLDL+  F  F + G G ++K++A+YHQ+ AV  AV+ ++ ASS +G+ + GVIW
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  299   HTQGSGKSLLMAFYAGQLVKHPAMANPTLVVLTDRNDLDDQLFSTFSMCRD-----LIRQ  353
             HTQGSGKSL M F++G+L+    + NPTLVV+TDRNDLD+QL+STF   ++     L+RQ
Sbjct  301   HTQGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   TPVQAESREDLQKVLSRASGGVIFTTLQKFG-----ELAEPLTTRRNVVVIADEAHRSQY  408
             TP QAE+R +L+ +LS  SGG++FTT+QKF          +LT R+NV+V+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQY  418

Query  409   GFKAKVDTKTGEISYGFAKYMRDALPNASFIGFTGTPIEADDVNTPAVFGNYIDVYDISR  468
             GF+AK D K   I YG+AKY+RDALPNA+F+GFTGTP+ + D NT  VFGNYIDVYD+++
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  469   AVEDGATVPIYYESRLARIELDEDEKPKIDAEVEDLTEEDSEADQERFKKKWSTVETLVG  528
             AV DG+TV IYYESR+  ++L +     +D   +D+TE++ E  ++R+K KWS +E+L G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  529   SDKRLALVAKDMVAHFDDRVAALDGKAMVVCMSRRICVKLYDEIVKLRPDWHSADDNAGA  588
             +  R+  +AKD++ HF+ R  A+ GK+M+V MSRRI V LYDEI++L+P+WHS DD+ G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  589   IKIVMTGAASDPQEWQQHIGNKARRDQLAKRARDPKDPLKLVIVRDMWLTGFDAPCMHTM  648
             IK+VMTG++SDP   Q+HIG K RR+ L KR +D  D L+LVIVRDMWLTGFD P MHTM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTM  656

Query  649   YVDKPMHGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALQQYSKNDQDNTGVDEA  708
             Y+DKPM GH LMQAIARVNRVF+DKP+GLIVDY+GIA++LK AL++Y+ +DQ +T++D  
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  709   QAIAVMMEKYEVVRDMYHGFDYASALTGTPQERLAMMAGAIEWLLDLQQRLAAKEKTEGG  768
             +A+ +M+ KY+V++DM   +DY+   ++   ER   ++ +++ +++L +           
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGE-----------  765

Query  769   KKNAHRRYQDAVlalskayslasasDEAREIREEVGFFQAIRAALVK-----SATGSGVT  823
               + ++R+  +V  L+KA++L ++   A+E+ +E++FF+A++A+LVK         +  T
Sbjct  766   --DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKT  823

Query  824   EQERELAIQQIVSRAVVSTEIVDILAAAGIKSPDISILSDEFLAEVQRMERKNLALEALR  883
               E E  I+Q+VS++VV+ +++D+  + G+  PD+SILSD+FL +V+ + +KN+A+E L 
Sbjct  824   PAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLN  883

Query  884   KLINDGIRSRSKANVVQTRAFSERLEDAVARYHANAITTAEVLQELIKLAKDIRAARKRG  943
             +L+++ ++S  K+N   ++ FSE L +++ +Y++ +I T+ V++ELI+LAKDI+  ++RG
Sbjct  884   RLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRG  943

Query  944   EESGLSDEEIAFYDALAENDSAVQMMGDDKLRLIAHELLVSLRENVSVDWAHRESARARM  1003
             +E GL+ +EIAFYDALA +++A + MGD  LR IAHEL  +++EN++VDW+ R+SA+A+M
Sbjct  944   NELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKM  1003

Query  1004  RVLVKRILRKYGYPPDLQYSAVQTVLQQAEALSSG  1038
             RV V+R+L+KYGYPPDLQ  AV+ V++QAE +++ 
Sbjct  1004  RVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

24) KN400_0449 in NC_017454


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  871 bits (3300),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 481/1059 (46%), Positives = 774/1059 (74%), Gaps = 47/1059 (4%)

Query  4     FNESIIEDATLAWLEGLGYTIRSGLDIAPGELLAERQDYSQVLLGDRLRQALARLNPSLP  63
             FNE  +E+ +L WL++LGY  + G +I+   L +ER+   +V+L +RL +AL ++N+ + 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  64    VEALDDAFRKLTRPEGATLEDRNRSVHRWLVDGVTVEYRHKDGHIAGAQARVIDFDLPGN  123
                ++ A++ LT   ++ L + N + H  L++G+ +E  + +G+      ++IDF+ P N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  124   NDWLAVNQFTVIENKHNRRPDVVLFVNGLPLVLVELKNAADENATIWSAFQQFQTYKAEL  183
             ND LAVNQ+T+++   ++RPD+VLF+NGLP+V++ELKN+++E   +  +++Q++TYK  +
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  184   PSLFTYNSLLVISDGVEARIGTLTAGKEWFKPWRTVSGESLAGPHIPELQVMLEGVFDKR  243
             P LFT+N +LV SDG++++ G+LTA  ++F  WR+  G++ ++P ++ L+V+++G+++  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  244   RLLDLLNFFIVFEDGGDGRLIKKMAGYHQFHAVNVAVSETLRAGKSADRAAEEIGRWEAG  303
              LLDL+ +F++F+D+G G++ K +A+YHQ+ AVN          K+ DRA          
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVN----------KAVDRA----------  284

Query  304   LQRGGEPGDRRIGVVWHTQGSGKSLTMAFYAGRVIREPAMSNPTLVILTDRNDLDDQLFG  363
             L  ++E GD + GV+WHTQGSGKSLTM F++G++I+   ++NPTLV++TDRNDLD+QL++
Sbjct  285   LLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYS  342

Query  364   TFSRC-----QDLLRQPPAQATDRADLRNKLAVNAGGVVFTTIQKFFPEEKGDRHPLLSD  418
             TF +      ++LLRQ P QA  R +L++ L+V++GG+VFTT+QKF PE++    + L++
Sbjct  343   TFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTE  402

Query  419   RRNIVVIADEAHRSQYDFID-----------GYARHMRDALPNASFIGFTGTPIELTDKN  467
             R+N++V+ADEAHR+QY+F             GYA+ +RDALPNA+F+GFTGTP+  TDKN
Sbjct  403   RKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKN  462

Query  468   TRSVFGDYISVYDIQRAVMDGATVPIYYESRLARLELEETEKPKIDPefeevtegeeier  527
             T+ VFG+YI VYD+ +AV DG+TV IYYESR+  L+L ++    +D  ++++TE++E + 
Sbjct  463   TQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDV  520

Query  528   keKLKSRWAQLEALVGSEKRIKLVAEDLVRHFEERQAAMEGKAMVVCMSRRICIDLYNAI  587
             K++LKS+W+++EAL G+  R+  +A D+++HFE RQ AM GK+M+V MSRRI +DLY+ I
Sbjct  521   KQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEI  580

Query  588   VALRPDWHHDDDDKGAIKVIMTGSATDPLEWQKHIRNKPRREALAKRFRSAGDPFRIVIV  647
             + L+P+WH DDDDKG IKV+MTGS++DP   Q+HI  K RR+ L KR +  +D +++VIV
Sbjct  581   IRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIV  640

Query  648   RDMWLTGFDAPSLATMYADKPMRGHGLMQAIARVNRVFKDKPGGLVVDYLGLADELRKAL  707
             RDMWLTGFD PS+ TMY DKPM+GH LMQAIARVNRVFKDKPGGL+VDY+G+A+ L+ AL
Sbjct  641   RDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEAL  700

Query  708   ATYTESGGTGKTAIDQADAVALMLEKYEVCKGLFHGFDWTAWLTGTPQQRLTLLPAAQEH  767
               YTES + ++TAID   AV LML KY+V ++++  +D +   ++   +R   ++ + + 
Sbjct  701   KEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDY  759

Query  768   ILS-QEDGKNRLLKAVTELSKAFALAVPHEDALAIRDDVAFFQAVRAVLAK-----SGTG  821
             +++  ED ++R++K+VTEL+KAFAL   +  A  + D++AFF+AV+A L K         
Sbjct  760   VIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGK  819

Query  822   ERKSDEELDHAIRQIISKAVASDEVIDIFEAAGLKKPDISILSDEFLAEVRGMPQRNLAV  881
              RK+  E++  I Q++S++V +++VID++++ GL +PD+SILSD+FL +V G+ Q+N+AV
Sbjct  820   TRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAV  879

Query  882   ELLQKLLKGEIRNRRRKNVVQARSFTEMLEEALRRYQNRAIETAQVIEELIALARQMREA  941
             ELL++LLKG++++  + N   ++ F+EML +++ +Y++R+IET++VIEELI LA+++++ 
Sbjct  880   ELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQE  939

Query  942   SGRGEELGLTEDELAFYDALEINDSAVKVLGDDTLRAIARELADTVRRNVTIDWTMRENV  1001
               RG+ELGL  DE+AFYDAL  +++A   +GD  LRAIA+EL+ TV+ N+ +DW+ R++ 
Sbjct  940   QQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSA  999

Query  1002  RAQLRVLVKRILRKYGYPPDKQEKATQIVLEQTEVLSQE  1040
             +A++RV V+R+L+KYGYPPD Q  A + V+EQ+E+++++
Sbjct  1000  KAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

25) NIS_1703 in NC_009662


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  869 bits (3291),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 524/1065 (50%), Positives = 770/1065 (73%), Gaps = 46/1065 (4%)

Query  3     NENSVENFTIDLLKSQGYDYLYGGDIALDGENPLRDSFEDVILFDRLKTAIKKINPSLPQ  62
             NE+ +E+ +++ L+S GYDY  G +I++ +  P R S  DV+L +RL  A++KIN+ +  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    DAIDDAIKQITQINTPDLIANNEIFHRMLTEGVKV-TYQKDGVQRGDIVWLVDFKNPQMN  121
               I+ A+ ++T  ++P+L+ NN  FH  L +G+ +  Y+ +G    +IV ++DF  PQ N
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  122   DFLVVNQFTVIENHKNKRVDIVLFINGLPLVVMELKNPTDSNANIKSAYNQLQNYKQTIP  181
             DFL VNQ+T+++ + +KR DIVLFINGLP+VV+ELKN+T+    +  +Y+QL+ YK  IP
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  182   TLFTYNEILIISDGLEAKMGSLSAGFDRFMAWKSADGKKEASHLVSQLETLIQGLLNKET  241
              LFT+NE+L+ SDG+++K GSL+A +DRFM+W+S DG+ E+S  ++ L+ LI+G+LN ET
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPET  245

Query  242   LIDYIRFFILFEKKKKEDKGQITVQTIKKIAAYHQYYAVNKAIKSTLRAIGQNKSNFLVK  301
             L+D IR+F+LF+    ++KG+I+    K +AAYHQYYAVNKA+  +L A ++        
Sbjct  246   LLDLIRYFVLFQD---DGKGHIS----KILAAYHQYYAVNKAVDRALLASSE--------  290

Query  302   EPPANYGLPDVKEQSEGDRKAGVVWHTQGSGKSLSMLFYAGKVIQTTNNPTIVVITDRND  361
                            +GD K+GV+WHTQGSGKSL+M+F++GK+IQ  NNPT+VV+TDRND
Sbjct  291   ---------------QGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRND  335

Query  362   LDDQLFNTFA-----TASKLLRQEPVQAASREELKKLLMVESGGVVFTTIHKFWPDDGNV  416
             LD+QL++TF      ++  LLRQ P QA +R ELK LL VESGG+VFTT++KF P++ + 
Sbjct  336   LDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNET  395

Query  417   Y-ETLSTRDNIIVIVDEAHRTQYGFRGRVDKKSGEIKYGFAKYLRDALPNATYIAFTGTP  475
                +L+ R N+IV+ DEAHRTQYGF ++ D K+  IKYG+AKYLRDALPNAT+++FTGTP
Sbjct  396   TMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTP  455

Query  476   IESTDKNTPAVFGNYIDIYDIANAVEDGATVPIYYESRLVKIDITeegkklieeyeeelD  535
             + STDKNT  VFGNYID+YD+++AV DG+TV IYYESR++ +++ +         +   D
Sbjct  456   VASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITED  515

Query  536   ARGLSEIEKAKAKYSKIEALVGAKPRIKEIAKDIVSHFESRLEVMDGKGMIVTMTWHIAA  595
                    ++ K+K S+IEAL GAKPR+  +AKDI+ HFE+R + M GKGMIVTM+++IA 
Sbjct  516   QEE-DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAV  574

Query  596   NLYDEIIKLRPDWHSDELKKGKIKVVMTTSSSDEPHIARFYLTKEQRRTLADRFKDPQDE  655
             +LYDEII+L+P+WHSD+  KG IKVVMT SSSD   + R    K +R  L  R KD +DE
Sbjct  575   DLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDE  634

Query  656   LKLVIVVDMWLTGFDVPSLHTMYIDKPMKGHTLMQAIARVNRVYKDKTGGLIVDYIGIAS  715
             L+LVIV DMWLTGFDVPS+HTMYIDKPMKGH LMQAIARVNRV+KDK GGLIVDY+GIA 
Sbjct  635   LQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAE  694

Query  716   DLKEALSFYSDSGGKGEPARLQEEAVKVMLEKLEVVRDMLYGYDYKRYFDADTSQKLHII  775
              LKEAL  Y++S ++++ A   + AV +ML K +V++DMLY  DY ++     S++   I
Sbjct  695   SLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTI  753

Query  776   LEVEDFILGL-ENGKKRFIDAVTALSKAFSLAVPHSEAMKIKDEVAFFQAVKSRLIKF--  832
              +  D+++GL E+ ++RFI +VT L+KAF+L   ++ A  ++DE+AFF+AVK+ L+K+  
Sbjct  754   SNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQ  813

Query  833   ----NIESENSFDYATAIKQIVDKAVSSSGVIDIFDAAGLKKPDISILSDEFLEEIKEMK  888
                       + +  + I+Q+V ++V + +VID++++ GL +PD+SILSD+FL ++  +K
Sbjct  814   PPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLK  873

Query  889   QKNLAIEALKKLINDEIKSRIKTNIVkskslkesleelIRKYNNRLLTAAEVIDELIHLA  948
             QKN+A+E L++L+++++KS +KTN   SK + E L + I KYN+R + ++ VI+ELI+LA
Sbjct  874   QKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLA  933

Query  949   KEIKQSDKEPEELGLSDYEYAFYCAVADNESARELMGKEKLKELAAVLFQKVKENTTIDW  1008
             K+IKQ ++  +ELGL+  E AFY A+A +E+A+E MG   L+ +A  L + VKEN  +DW
Sbjct  934   KDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDW  993

Query  1009  AIRESARAKLKVIIKRTLRQYGYPPDMQKLATQTVLEQAEALAND  1053
             + R+SA+AK++V ++R L++YGYPPD+QK+A + V+EQAE +AN+
Sbjct  994   SKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

26) hsdR1 in NC_016894


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  868 bits (3288),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 496/1018 (49%), Positives = 760/1018 (75%), Gaps = 44/1018 (4%)

Query  22    GLGYAYAFGPDISPGGEAPERQDHREVILAERVKDALFRINRDLPQEALDEAYRQIITFN  81
             +LGY Y  G +IS  + +PER+ +++V+L ER+  AL +IN D+    ++ A +++   +
Sbjct  20    SLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEK  79

Query  82    SPMLAENNRHFHRLLTEGIEV-SFSEKGNIRTKRAFVINYEQPETNDFLVVNQFTIIEHE  140
             SP L ENN  FH  L +GIE+  + + G+       +I++E P+ NDFL VNQ+TI++ +
Sbjct  80    SPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGD  139

Query  141   -ERRPDLILFINGLPLIVVELKSASDENVGISSAYNQIQTYKKDLPNLFVYNAFCILSDG  199
               +RPD++LFINGLP++V+ELK++++E VG+  +Y+Q++TYK  +P+LF +N   + SDG
Sbjct  140   YKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDG  199

Query  200   INAKAGTLTSNEERFMNWRTVDGVVIEPKANPQYEVLFHGMLKPQRVLEIIRYFILFQES  259
             IN+KAG+LT+N +RFM WR+ DG    + + +  +VL+HGML+P+ +L++IRYF+LFQ+ 
Sbjct  200   INTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQD-  258

Query  260   QQSDTDKNGQKLGDKKAIIKILAAYHQYFAVQKAVEKTREAAGEDGDRKIGVIWHTQGSG  319
                         ++K  I KILAAYHQY+AV+KAV+++  A++E+GD K GVIWHTQGSG
Sbjct  259   ------------DGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSG  306

Query  320   KSFSMVFYTAALVRELNNPTIVVITDRNDLDDQLFATFSKSQD-----ILRQTPKLAHTR  374
             KS++MVF+++ L++ LNNPT+VV+TDRNDLD+QL++TF KS++     +LRQTPK A+TR
Sbjct  307   KSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETR  366

Query  375   KLTASQKAQQNGTNAVAINGLYELLNDREAGGIIFTTIQKFTPESGE--MPVLTDRKNVI  432
             K                +++L  +    E+GGI+FTT+QKF PE  E  M+ LT+RKNVI
Sbjct  367   K---------------ELKSLLSV----ESGGIVFTTMQKFEPEQNETTMAALTERKNVI  407

Query  433   IIADEAHRSQYGLAAKTDLKSGAVKYGYAKYLRDALPNASFIGFTGTPIDLDDRSTTSVF  492
             ++ADEAHR+QYG+ AK D K+ ++KYGYAKYLRDALPNA+F+GFTGTP+   D++T  VF
Sbjct  408   VMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVF  467

Query  493   GQCIDTYDMTRAVEDEATVRIYYENRIIKLDTVDTELIKIDAAFEDITEGQEDTERDKNK  552
             G+ ID YDMT+AV D +TV+IYYE+R+I L+  ++  + +D A++DITE+QE+  +++ K
Sbjct  468   GNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLK  525

Query  553   ATWSRLEAVVGSPNRIKKLAEDIIAHYEEKSKAITGKAMVVCMSRRICAELYDAMVTLRA  612
             + WSR+EA+ G+  R+  LA DII H+E + +A+ GK+M+V MSRRI  +LYD ++ L++
Sbjct  526   SKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKP  585

Query  613   DWHSDDVNQGKIKVVMTGSAADSEKLQPHIGGKQRRDTLAKRMKDNSDELSIVLVRDMWL  672
             +WHSDD ++G IKVVMTGS++D+  +Q HIG K+RR+ L KRMKD  DEL +V+VRDMWL
Sbjct  586   EWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWL  645

Query  673   TGFDVPSLHTMYIDKPMQGHGLMQAIARVNRVFKEKSGGVVVDYLGILESLKKALNQYTN  732
             TGFDVPS+HTMYIDKPM+GH LMQAIARVNRVFK+K+GG++VDY+GI ESLK AL++YT+
Sbjct  646   TGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTE  705

Query  733   SDRGNTGIDVNVAVAIMTEKLEILKDMMHGYDFSAYFGDSKVKRLRAITGGMDFVLGKSM  792
             SD+++T+ID + AV +M  K ++++DM+   D+S + +D K  R  +I+  MD+V+G + 
Sbjct  706   SDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGE  765

Query  793   EDQKEFKTITIELAKSHSLCAATEDAKARALEVNYFKAVKASMVKFSDSERVDPT-LSKQ  851
             ++++ F     EL+K+ +LCA+   A+    E+ +FKAVKA++VK+ ++ + + T  +  
Sbjct  766   DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPA  825

Query  852   EVEARLHQLLERSIISEDVIDVFDVMGIKRPDISLLSEDFLEEVRAMKEKNLAVEMLRKL  911
             EVEA ++QL+ +S+++EDVIDV++ +G+ +PD+S+LS+DFL +V ++K+KN+AVE+L +L
Sbjct  826   EVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRL  885

Query  912   LEGNIKGMERSNLVKSEKFSEKLQKALNKYRNQAITNAEVIEELIRMAHEIRQMKEAEAK  971
             L G++K++ ++N   S +FSE L +++NKY +++I  + VIEELI++A +I+Q ++    
Sbjct  886   LKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNE  945

Query  972   LGLSEDEIAFYDALTADEIVREFMEDDTLKTIAQELTIAIRNNITIDWSVRKSAQASM  1029
             LGL+ DEIAFYDAL+++E  +E M D  L++IA+ELT ++++N+ +DWS R SA+A M
Sbjct  946   LGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKM  1003

27) Desgi_1004 in NC_021184


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  868 bits (3286),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 530/1085 (49%), Positives = 777/1085 (72%), Gaps = 59/1085 (5%)

Query  1     MKNRITENAIEEFAIELLEKAGYQYIYAPDIAPDSATPERQSFEEVLLLDCLQTAVGRIN  60
             M+ ++ E+ +E+ A+E L+  GY+Y  + +I+  S TPER+S  +V+L + L+ A+ +IN
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  61    PKMPADVREDAIKQIQRLNSPELITNNEAFHRMLTEGIKV-SYQKDGNERGDYVWLIDYK  119
             + + +   E A+ ++   +SP+L+ NN +FH  L +GI +  Y+ +G+   + V +ID+ 
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  120   NPDNNDFIVTNQFTVIEKGVNKRPDIILFVNGLPLVVIELKNPADENATVKSAYKQLQTY  179
              P+NNDF+  NQ+T+++ + +KRPDI+LF+NGLP+VVIELKN+++E   V  +Y QL+TY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   IQAIPNLFTFNAIMVISDGLEAKAGSLSAGLSRFMTWKSSDGKIEASHLIGQLETLLKGM  239
                IP+LFTFN ++V SDG+++KAGSL+A   RFMTW+S DG+ E+S  ++ L+ L+ GM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  240   LNKETLLDLIRHFIVFEKSKKEDKKTGIITIQTVKKLAAYHQYYAVNRAVESTLRAAGYS  299
             LN ETLLDLIR F++F+   K          +  K LAAYHQYYAVN+AV+ +L      
Sbjct  241   LNPETLLDLIRYFVLFQDDGKG---------HISKILAAYHQYYAVNKAVDRAL------  285

Query  300   FISGKHSLSIVMESPESYGVAGVKQQPVGDRKGGVVWHTQGSGKSLSMVFYTGKIVLAMN  359
                        + S+E            GD KGGV+WHTQGSGKSL+MVF++GK++  +N
Sbjct  286   -----------LASSEQ-----------GDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLN  323

Query  360   NPTVVIITDRNDLDDQLFDTFA-----SSKQLLRQDPVQAEDREHLKELLKVASGGVVFT  414
             NPT+V++TDRNDLD+QL+ TF      S+K LLRQ P QAE R +LK LL V SGG+VFT
Sbjct  324   NPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFT  383

Query  415   TIQKFQPDEGNV-FEQLSVRENIIVIADEAHRTQYGFKAKTIDDRDEQGTVIGKKIVYGF  473
             T+QKF+P++ +     L+ R N+IV+ADEAHRTQYGF+AK  DD+       G  I YG+
Sbjct  384   TMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAK-YDDK-------GEGIKYGY  435

Query  474   AKYMRDALPNATYLGFTGTPIESTDINTPAVFGNYIDVYDIMQAVDDGATVRIYYESRLA  533
             AKY+RDALPNAT++GFTGTP+ STD NT  VFGNYIDVYD+ QAV DG+TV+IYYESR+ 
Sbjct  436   AKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVI  495

Query  534   KINLSEEGKKLVADLDEELDKDGLTETQKAKAKWTQLEALIGSADRVKQVARDIINHFEQ  593
              +NL++ +  L    ++  + +     Q+ K+KW+++EAL G+  RV  +A+DII+HFE 
Sbjct  496   PLNLPQ-SLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFET  554

Query  594   RQEVFEGKAMIVSMSRRIAADLYDEIIKIKPQWHSADLKKGVIKVVMTSNSSDGPEISKH  653
             RQ+   GK+MIV+MSRRIA DLYDEII++KP+WHS D  KGVIKVVMT++SSD   + +H
Sbjct  555   RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRH  614

Query  654   HTTKEQRRALADRMKDPEDDLKLVIVRDMWLTGFDVPSMHTLYIDKPMKGHNLMQAIARV  713
                K +R  L  RMKD +D+L+LVIVRDMWLTGFDVPSMHT+YIDKPMKGHNLMQAIARV
Sbjct  615   IGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARV  674

Query  714   NRVYKDKPGGLVVDYLGIASDLKKALAFYSNSGGKGDPAISQEKAVQFMLEKIEVVAQMY  773
             NRV+KDKPGGL+VDY+GIA  LK AL  Y++S ++++ AI  +KAV++ML K +V+ +M 
Sbjct  675   NRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDML  733

Query  774   HGFAYENYFDADTSTKLSIILAAEEHILGLV-NGKKRYIDEVTALSKAFAIAIPHEQAMD  832
               + Y ++     S +   I  + + ++GL  + ++R+I  VT L+KAFA+   +  A +
Sbjct  734   YNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQE  793

Query  833   VKDEVSFFQAVKSRLAK-FDSTGAGKTN---EEMETAIRQVIDKALITEQVIDVFDAAGI  888
             ++DE++FF+AVK+ L K +++   GKT     E+E+ I Q++ ++++TE+VIDV+++ G+
Sbjct  794   LNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGL  853

Query  889   KKPDISILSEEFLLEVKNMEHKNVALEVLKKLLNDEIKSRTKKNLIQSKALMEMLENSIK  948
              +PD+SILS++FL +V  + +KNVA+E+L++LL++++KS  K N   SK + EML NSI+
Sbjct  854   EQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSIN  913

Query  949   KYHNKILTAAEVIEELIALGKDIQKMDKEPQEMGLSEYEYAFYTAIANNESARELMQKDK  1008
             KY+++ + ++ VIEELI L+KDI++ ++  +E+GL+  E AFY A+A++E+A+E M    
Sbjct  914   KYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKE  973

Query  1009  LRELAVVLFEKVKENASIDWTIKESVKAKLKVIVKRTLRKYGYPPDMQKLATETVLKQAE  1068
             LR +A  L   VKEN ++DW+ ++S KAK++V V+R L+KYGYPPD+QK+A E V+ QAE
Sbjct  974   LRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAE  1033

Query  1069  LIAEE  1073
             L+A++
Sbjct  1034  LMANN  1038

28) MM_2204 in NC_003901


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  867 bits (3285),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 519/1074 (49%), Positives = 775/1074 (73%), Gaps = 61/1074 (5%)

Query  15    AIELLERQGYQYIYAPDIAPDSDTPERDRFEDVLLLERLRKAIGRINPDIPADAREDAIR  74
             A+E L+  GY+Y  + +I+  S TPER    DV+L ERL KA+ +IN+DI +   E A++
Sbjct  14    ALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALH  73

Query  75    QVRRLNSPELISNNEAFHKMLTEGINV-SYRKDGADRGDLVWLVDFKDPENNDFLVANQF  133
             ++   +SP+L+ NN +FH  L +GI++  Y  +G    ++V ++DF  P+NNDFL  NQ+
Sbjct  74    ELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQL  133

Query  134   TVVENDKNKRPDIILFVNGLPLVVIELKNPADENATVRSAFRQFQTYKQTIPSLFAYNGF  193
             T+V+ D +KRPDI+LF+NGLP+VVIELKN+++E   V  +++Q++TYK  IP LF++N  
Sbjct  134   TIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEV  193

Query  194   MVISDGLEARSGSLSAGFTRFMAWKSSDGRGEASPLIGQLETLIKGMLEKTTLLDILRHF  253
             +V SDG+++++GSL+A + RFM+W+S DG+ E+SP ++ L+ LI GML+  TLLD++R F
Sbjct  194   LVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYF  253

Query  254   IVFEKSKKEDSATGIITIQTVKKLASYHQYYAVNRAVESTLRASGYAAKENWDWDTLGIH  313
             ++F+   K          +  K LA+YHQYYAVN+AV+ +L AS+               
Sbjct  254   VLFQDDGKG---------HISKILAAYHQYYAVNKAVDRALLASS---------------  289

Query  314   YESPENYGLPGVKKQPVGDRKGGVIWHTQGSGKSLTMVFYTGKIVLAMDNPTLVVITDRN  373
                              GD KGGVIWHTQGSGKSLTMVF++GK++  ++NPTLVV+TDRN
Sbjct  290   ---------------EQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRN  334

Query  374   DLDDQLFDTFA-----ASKQLLRQEPVQAENRDHLKQLLNVASGGIVFTTIQKFQPEEGN  428
             DLD+QL+ TF      ++K LLRQ P QAE R +LK LL+V SGGIVFTT+QKF+PE+ +
Sbjct  335   DLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNE  394

Query  429   VY-PKLSDRKNIIVIADEAHRTQYGFKAKNVDVKDEQGNVIGKKIVYGFAKYTRDALPNA  487
                + L++RKN+IV+ADEAHRTQYGF+AK     D++G+ I     YG+AKY RDALPNA
Sbjct  395   TTMAALTERKNVIVMADEAHRTQYGFNAKY----DDKGEGIK----YGYAKYLRDALPNA  446

Query  488   TFLGFTGTPIEKTDVNTPVVFGNYVDIYDISQSVEDGATVKIYYESRLAKVTLSNEGkkl  547
             TF+GFTGTP+  TD NT +VFGNY+D+YD++Q+V DG+TVKIYYESR+  + L+ ++  L
Sbjct  447   TFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP-QSLDL  505

Query  548   vaeldeeldkedlaeTQKIKAKWTQLEALIGSEARIKQIAKDIVTHFEQRQEVFEGKGMI  607
                 ++  + ++    Q++K+KW+++EAL G+ +R+  +AKDI+ HFE RQ+   GKGMI
Sbjct  506   DEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMI  565

Query  608   VAMSRRIAADLYDEVIKIKPEWHSDDLRKGAIKVVMTSASSDGPKISKHHTTKDQRRILA  667
             V+MSRRIA DLYDE+I++KPEWHSDD  KG IKVVMT++SSD   + +H   K +R +L 
Sbjct  566   VTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLE  625

Query  668   ERMKNPEDELKLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVNRVYKDKPGSL  727
              RMK+ +DEL+LVIVRDMWLTGFDVP +HTMYIDKPMKGH LMQAIARVNRV+KDKPG+L
Sbjct  626   KRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGL  685

Query  728   IVDYLGIASDLKEALSFYSDSGGKGDPAVLQEKAVQLMLEKLEIVSQMFHGFTFDDYFEA  787
             IVDY+GIA  LKEAL  Y++S ++++ A+  +KAV+LML K +++ +M+  + +  +   
Sbjct  686   IVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSD  744

Query  788   DTSRKLSIILEAEEHILGL-ENGKKRYIDEVTALSKAFSLAIPHEQAMDVKDEISFYQAV  846
               S +   I ++ + ++GL E+ ++R+I  VT L+KAF+L   +  A +++DEI+F++AV
Sbjct  745   KKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAV  804

Query  847   KARLVKF----DGTGTGKTDEDIETAIRQVIDKALVTEQVIDVFDAAGIKKPDISILSED  902
             KA LVK+        T KT  ++E+ I Q++ +++VTE+VIDV+++ G+ +PD+SILS+D
Sbjct  805   KAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDD  864

Query  903   FLLEVRNMEHKNLALEVLKKLLNDEIRARIKKNLIQSRSLMEMLENSITRYHNKVLTAAE  962
             FL +V  + +KN+A+E+L++LL++++++ +K N   S+ + EML NSI +Y+++ + ++ 
Sbjct  865   FLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSK  924

Query  963   VIEELIKLSKEIKRMDKEPQEMGLSEFEYAFYTAIADNESAREVMQKEKLRELAVVLFEK  1022
             VIEELI+L+K+IK+ ++  +E+GL+  E AFY A+A +E+A+E M    LR +A  L   
Sbjct  925   VIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKT  984

Query  1023  VKQNASIDWTIKESVRAKLKVIVKRTLRQYGYPPDMQALATETVLKQAELIADE  1076
             VK+N ++DW+ ++S +AK++V V+R L++YGYPPD+Q +A E V+ QAEL+A++
Sbjct  985   VKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

29) Nhal_0892 in NC_013960


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  866 bits (3278),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 507/1073 (48%), Positives = 784/1073 (74%), Gaps = 50/1073 (4%)

Query  4     KLTESAIENLAIELLANQGYQYLHGADLAPDAPNPGRPSFGDEFLVGRLQDAVARLNPTI  63
             ++ E  +E++A+E L + GY+Y  G +++  +  P R S  D  L  RL+ A+ ++N+ I
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  64    PPDAQEQAIKEILRLAVETGSTRELLAANEAFHRLLTNGVEVE-FQHEGRTKGDKVWLVD  122
              P   E+A+ E   L++E ++  +LL  N +FH  L NG+E+E +++EG++  + V ++D
Sbjct  64    HPRFIEKALHE---LTLEKSP--NLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIID  118

Query  123   FANPAANDCLVVNQFTVTTKSGHGHVNKRPDLVLFINGLPLVVVELKNAASENATVRSAY  182
             F  P  ND L VNQ+T+     +G+ +KRPD+VLFINGLP+VV+ELKN+++E   V  +Y
Sbjct  119   FEYPQNNDFLAVNQLTIV----NGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGY  174

Query  183   EQLQTYKHAIPSLFLANGLLVASDGLEARMGSLSAGFSRFMAWKTTDGKKEASHRVGQLE  242
             +QL+TYK  IP LF  N +LV+SDG++++ GSL+A + RFM+W++ DG+ E+S  ++ L+
Sbjct  175   HQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLD  234

Query  243   TLIQDVLKPATLLELIRHFTVFEKSRREDPKTGLTTVETVKKTAAYHQFYAVKKAVESTL  302
              LI+++L+P TLL+LIR F +F+    +D K  ++ +      AAYHQ+YAV+KAV+ +L
Sbjct  235   VLIHGMLNPETLLDLIRYFVLFQ----DDGKGHISKI-----LAAYHQYYAVNKAVDRAL  285

Query  303   HATGTDGSRKGGVVWHTQGSGKSLSMVFYAGKLVLALDNPTIVVLTDRNDLDDQLFDTFA  362
              A++ +G  KGGV+WHTQGSGKSL+MVF++GKL+  L+NPT+VV+TDRNDLD+QL+ TF 
Sbjct  286   LASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFV  345

Query  363   -----ASRQLLRQEPVQAENRDDLRDKLKVASGGVIFTTMQKFSPKNGEAIYPLLSDRRN  417
                  +++ LLRQ P QAE R +L+  L V SGG++FTTMQKF P + E+  + L++R+N
Sbjct  346   KSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKN  405

Query  418   IVVIADEAHRSQYGFKAKEVDIKDADDNIVGKKTAYGFAKYLRDALPNATFIGFTGTPVE  477
             ++V+ADEAHR+QYGF+AK     D ++ I      YG+AKYLRDALPNATF+GFTGTPV 
Sbjct  406   VIVMADEAHRTQYGFNAK---YDDKGEGI-----KYGYAKYLRDALPNATFVGFTGTPVA  457

Query  478   LDDKNTPAVFGDYVDVYDIAQAVEDGATVRIYYESRLAKVRLKEKEKEALDQRFDQVMED  537
               DKNT  VFG+Y+DVYD++QAV DG+TV+IYYESR+  + L+  +   LD+ ++++ ED
Sbjct  458   STDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRV--IPLNLPQSLDLDEAYNDITED  515

Query  538   AADYETGFSDEDELSEKAKAKWTQLEAIVGNRQRVENVARDLVAHFEERQKIFDGKGLII  597
                      +E+++ ++ K+KW+++EA+ G + RVE +A+D++ HFE RQ+   GKG+I+
Sbjct  516   ---------QEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIV  566

Query  598   AMSRRICVELYDAIVTLRLGWHSDDDAQGAIKVIMTGSSADPQAMQPHIRSKEARKAIGE  657
             +MSRRI V+LYD I+ L+  WHSDDD +G IKV+MTGSS+DP + Q HI +K  R+ +  
Sbjct  567   TMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEK  626

Query  658   RLKDPGDPLKLVIVRDMWLTGFDAPCLHTLYVDKPMKGHNLMQAIARVNRVYKDKPGGLV  717
             R+KD +D L+LVIVRDMWLTGFD P +HT+Y+DKPMKGHNLMQAIARVNRV+KDKPGGL+
Sbjct  627   RMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLI  686

Query  718   VDYIGIASDLKRVLAIYTESGGKGQPTLDIDDAVRAMQEKFEVVQQMLAGFDYRRYFGAN  777
             VDY+GIA  LK  L  YTES +++Q ++D D AV  M  K++V+Q+ML  +DY ++ + +
Sbjct  687   VDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDK  745

Query  778   TSGKLTIILEAEEYVLAL-EDGKARFSKEVDLLAKAFALSVPDERAMAIKDELAFFQAVK  836
              S +   I ++ +YV++L ED + RF K V  L+KAFAL   +  A  ++DE+AFF+AVK
Sbjct  746   KSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVK  805

Query  837   ARLAKF--ERGEGKSK---EELDSAIRQLVDEAVVSDQVVDIFDAAGIKKPDISILSDEF  891
             A L K+     EGK++    E+++ I QLV ++VV+++V+D++++ G+ +PD+SILSD+F
Sbjct  806   AGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDF  865

Query  892   MAEIKGMQHRNLALELLRKILNDEIRVRSKKNLVQSRALSEMLESAIKRYQNNllsaagi  951
             + ++ G++++N+A+ELL ++L+++++   K N   S+ +SEML ++I++Y++  + ++ +
Sbjct  866   LKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKV  925

Query  952   ieelielareikeaDRRGEKLGLTEDELAFYDALEVNDSAVQVLGDNQLREIARKLVEKV  1011
             IEELI+LA++IK+ ++RG+ LGL  DE+AFYDAL  +++A + +GD++LR IA+ L   V
Sbjct  926   IEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTV  985

Query  1012  KQNATIDWTVKESVRSKLKVIVKRILRKYGYPPDKQATATETILKQAELLAES  1064
             K+N  +DW+ ++S ++K++V V+R+L+KYGYPPD Q  A E ++ QAEL+A++
Sbjct  986   KENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

30) SYN_00497 in NC_007759


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  864 bits (3272),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 512/1051 (49%), Positives = 770/1051 (74%), Gaps = 36/1051 (3%)

Query  6     ESDVEEFVIELLQNQDFEY-----LSPEQQENERESLSTVIFRDRLKQAINQINPKVPAP  60
             E D+E+  +E LQ+ +++Y     +S      ER S   V++++RL +A+ +IN+ + + 
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  61    AREQAFKQVFNLSSQSLMVNNEAFHLMLTEGIEVE-YMGKKGIKGDKVSLIDFENIENNE  119
               E+A+ ++    S +L+ NN +FH  L +GIE+E Y +      + V +IDFE  +NN+
Sbjct  67    FIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNND  126

Query  120   FLVCNQFTVIENNINKRPDVVVFINGLPLVVIELKNPADENATVQKAFTQLQNYKKAIPS  179
             FL  NQ+T+++ + +KRPD+V+FINGLP+VVIELKN+++E   V+ ++ QL+ YK  IP 
Sbjct  127   FLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  180   LFHYNSILIASDGLDAKTGTISSDISRFVAWKSKDGFTEDKETVPQIETMVRGMLSKETL  239
             LF +N +L++SDG+++K+G+++++  RF++W+SKDG TE    ++ ++ +++GML+ ETL
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETL  246

Query  240   IDLIRHFIVFEKSKKEDLETGLTSVVAIKKIAAYHQYYAVNKAIQSTLIASGTDGNRKAG  299
             +DLIR F++F+   K ++          K +AAYHQYYAVNKA++ +L+AS+ +G+ K+G
Sbjct  247   LDLIRYFVLFQDDGKGHIS---------KILAAYHQYYAVNKAVDRALLASSEQGDGKGG  297

Query  300   VVWHTQGSGKSLSMVFYTGKTVFKLNNPTVVVLTDRNDLDDQLFDTFASCKQ-----LLR  354
             V+WHTQGSGKSL+MVF++GK +  LNNPT+VV+TDRNDLD+QL+ TF   K      LLR
Sbjct  298   VIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLR  357

Query  355   QEPVQAESRESLKNLLKVAGGGIVFTTIQKFFPESGASDYEQLSERKNIIVIADEAHRSQ  414
             Q P QAE+R  LK+LL V +GGIVFTT+QKF PE   +    L+ERKN+IV+ADEAHR+Q
Sbjct  358   QTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQ  417

Query  415   YGFGAKTRIVKKNGKDEEAVTRYGFAKYMRDALPNASFIGFTGTPIEKEDASTPAVFGNY  474
             YGF AK         D     +YG+AKY+RDALPNA+F+GFTGTP+   D +T  VFGNY
Sbjct  418   YGFNAKY-------DDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNY  470

Query  475   VDVYDIAQAVEDGATVKIFYESRLAKVHLKPEERAKLDeeaesigegeetakekakakw-  533
             +DVYD++QAV DG+TVKI+YESR+  + L+  +   LDE  + I E++E    +      
Sbjct  471   IDVYDMTQAVADGSTVKIYYESRV--IPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKW  528

Query  534   aqieaIVGHSDRLKTVAADIIDHFEKRQQVFEGKGMIVCMSRRIAVELYEQIIELRPEWE  593
             ++IEA+ G   R+ ++A DII+HFE RQQ   GKGMIV MSRRIAV+LY++II L+PEW+
Sbjct  529   SRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWH  588

Query  594   NDDLKKGCIKVVMTSASSDPEKWQKHSTTKKDRKAIADRFKDTADPLKLVIVRDMWLTGF  653
             +DD  KG IKVVMT++SSDP   Q+H   KK R+ +  R KD  D L+LVIVRDMWLTGF
Sbjct  589   SDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGF  648

Query  654   DVPCLHTMYVDKPMRGHNLMQAIARVNRVFKDKPGGLIVDYIGIASDLKSALATYTASGG  713
             DVP +HTMY+DKPM+GHNLMQAIARVNRVFKDKPGGLIVDY+GIA  LK AL  YT S +
Sbjct  649   DVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-D  707

Query  714   KGTPTLDQEEAVATLLEKFEIVEQMFDGFDYKGFFTSSTQEKLILILEAQEHILGL-EDG  772
             ++  ++D + AV  +L K++++++M+  +DY  F +    E+   I ++ + ++GL ED 
Sbjct  708   QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDE  767

Query  773   KNRFTKQVSLLSQAFALSVPHPKAMEIKDEVGFFQTVKARLVK-FEPTGSG---KSDAEV  828
             ++RF K V+ L++AFAL   +P A E++DE++FF++VKA LVK ++P   G   K+ AEV
Sbjct  768   RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  829   ETAIRQIVDKAVVSDGIIDVFDAAGIKKPDISILSDDFMEEVRHMERKNLALELLKKILN  888
             E+ I Q+V ++VV++++IDV+++ G+ +PD+SILSDDF+ +V  + +KN+A+ELL+++L+
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  889   DEIKTRTRKNLIQSKKLSEMLENAINKYQNNLLTTAQVIEELIKLAKEFKESDKRGKDLN  948
             +++K+  + N   SK++SEML N+INKY++  + T++VIEELI+LAK++K+ ++RG++L 
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  949   LNDEELAFYDALANNESAKQVLGDKQLAVIAIEVFNSIKRNATIDWTLKETVRARLRRDV  1008
             LN +E+AFYDALA++E+AK+ +GDK+L  IA E+ +++K N  +DW+ +++ +A++R  V
Sbjct  948   LNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAV  1007

Query  1009  KRILKRYGYPPDMQLLATENVLKQAELMADG  1039
             +R+LK+YGYPPD+Q +A E+V+ QAELMA+ 
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

31) Syn6312_0882 in NC_019680


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  863 bits (3267),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 513/1054 (49%), Positives = 775/1054 (74%), Gaps = 28/1054 (2%)

Query  1     MSF-VTEDDIEQVLIEQLQHLGYHYLPDSVANPDGTAPERESYADVILPQRLRDALDRLN  59
             M+F   EDD+EQV +E LQ LGY+Y  ++  +  + +PER S  DV+L +RL  AL ++N
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  60    PTIPATARDDAFKKLIATEKPNLIEENRRLHQLLIEGIDVEFYSDDGTIRGDKVYAIDFA  119
             + I +   + A+  L     PNL+E+N  +H+ LI+GI++E Y D+G    + V  IDF 
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  120   QPEQNDWLVLNQFTVIEAGQNRRSDVVVFVNGLPLAVIEIKNPGTETATLAAAYNQLQTY  179
              P++ND L +NQ+T+++++ ++R+D+V+F+NGLP+ VIE+KN+  ET  +  +Y+QL+TY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KAQISSLFRTNAVLVTTDGLMARIGSLTADLERFMPWRTTDGETIAPKGTPEMSTLVEGV  239
             K +I+ LF  N VLVT+DG+ ++ GSLTA+ +RFM WR+ DG+T ++ G + +  L++G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  240   FTKRHLLNLIQNFTVFGDDGTG-ITKIIAGYHQFHGVQKAIAKTIAATHQTGDRKAGVIW  298
             +    LL+LI+ F +F DDG G I+KI+A+YHQ+ +V+KA+ +++ A+ + GD K+GVIW
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  299   HTQGSGKSLLMAFYVGQLVRRPELENPTIVVITDRNDLDDQLFATFAMCRD-----LIRQ  353
             HTQGSGKSL M F+ G+L++   L+NPT+VV+TDRNDLD+QL++TF   ++     L+RQ
Sbjct  301   HTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   TPQQANSREDLQTLLNQVSGGVIFTTIQKFAPPTGETRYPVLTERRNVIVIADEAHRSQY  413
             TP+QA++R +L++LL+  SGG++FTT+QKF P   ET  + LTER+NVIV+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQY  418

Query  414   GFKAKVDQKSGVIAYGFAKYLRDALPHASFIGFTGTPIEASDVNTPAVFGNYIDIYDISR  473
             GF+AK D+K+  I YG+AKYLRDALP+A+F+GFTGTP+ ++D NT  VFGNYID+YD+++
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  474   AVEDGATVPIYYESRLARIELPEDEKPKidaeiedliddedsdQARLSQKWATVQALVGA  533
             AV DG+TV IYYESR+  ++LP+        +     ++ED  Q RL  KW+ ++AL GA
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQ-RLKSKWSRIEALAGA  537

Query  534   EKRLKQVARDLVTHFENRITALKGKAMIVCMSRAICVKLYNHIIELRPDWHSDDEQAGII  593
               R+  +A+D++ HFE R  A+KGK+MIV MSR I V LY++II L+P+WHSDD++ G+I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  594   KIVMTGAASDPPEWQPHIGNKARRDLMAKRLKDPTDPLQLVIVRDMWLTGFDAPALHTMY  653
             K+VMTG++SDP   Q HIG K RR+L+ KR+KD  D LQLVIVRDMWLTGFD P++HTMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  654   VDKPMKGHGLMQAIARVNRVFRDKPAGLVVDYIGIGQRLREALRDYSAQDQRQTGIDEAE  713
             +DKPMKGH LMQAIARVNRVF+DKP+GL+VDY+GI++ L+EAL++Y+  DQ QT+ID   
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDK  717

Query  714   AVALMLEKYDVVRAMFHGFNYQRGLDGTPQERLVVMAEAMEWILDQQHQAALQETEPTKQ  773
             AV LML KYDV++ M+  ++Y +   +   ER   ++++M+ ++      +L E E    
Sbjct  718   AVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVI------GLGEDE----  767

Query  774   KQARRRYQDavlalskafalaaasdearsIRDEVGLFQTIRAALVKSTTGPGQ-----SA  828
                R+R+  +V  L+KAFAL A+   A+ + DE+++F++++A+LVK    P +     ++
Sbjct  768   ---RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTP  824

Query  829   AEREFAVQQIIDRAVVSTEIVDILSAAGlsspdisilsddfllEVRQMEKKNLAIEALRR  888
             AE E  ++Q++ ++VV+ +++D+  + GL  PD+SILSDDFL +V  + +KN+A+E L R
Sbjct  825   AEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNR  884

Query  889   LLNDEVRSRSANNITQQKKFSERLEQAIARYHTNALSTVEVIQELINLAQDIKAAKARGE  948
             LL+++V+S    N T  K+FSE L ++I +Y++ ++ T  VI+ELI+LA+DIK  + RG+
Sbjct  885   LLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGN  944

Query  949   NQGLSADEYAFYDALAENQSAVEVMGNEQLKIIAHELLVSLKSNVTVDWAHRESARARLR  1008
             + GL++DE AFYDALA +++A E MG+ +L+ IAHEL  ++K N+ VDW+ R+SA+A++R
Sbjct  945   ELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMR  1004

Query  1009  TIVKRILKKYGYPPDMQAMAVQTVLQQAEALSAH  1042
               V+R+LKKYGYPPD+Q MAV+ V++QAE ++ +
Sbjct  1005  VAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

32) Turpa_2677 in NC_018020


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  863 bits (3267),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 495/1046 (48%), Positives = 767/1046 (74%), Gaps = 26/1046 (2%)

Query  7     NEDLLEQAALQWFKEQGYTHIHGSTIAPGEPAAERESFEEVVLSGRIRDALARINPTLST  66
             NED LEQ AL+W++  GY    G+ I+    ++ER S  +VVL  R+  AL +IN+ +  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  67    EVIDEAHKQLMRMDAPTCLINNRTFHRYVTDGISV-SYSKNGDERVEPVKIIDFEKPENN  125
               I+ A  +L    +P  L NN TFH  + +GI +  Y  +G+  VE VKIIDFE P+NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  126   DWLVVNQFAIIAKPYHRRPDIIVFLNGLPLVVFELKNMVGAP-TVADAYRQLQTYKAQIP  184
             D L VNQ++I+   Y +RPDI++F+NGLP+VV+ELKN       V D+Y+QL+TYK +IP
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  185   KLFNYNELMVVSDGNATTLGTLTADESRFMPWKYIESEKLISGGKLSIQVVIEGVFEKRR  244
             +LF +NE++V SDG  T  G+LTA+  RFM W+  +++   S G  S++V+I+G+++   
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPET  245

Query  245   FLDLIRYFVVYEDNYGGEVIKKIAGYHQFHAVNRALAETVRATGANGDRRIGVVWHTQGS  304
             +LDLIRYFV+++D+  G++ K +A+YHQ+ AVN+A+  ++ A++ +GD + GV+WHTQGS
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGS  305

Query  305   GKSLTMAFYAGRVVQSAAMENPTVLVITDRNDLDDQLAGTFSRCHE-----ILRQNPTQA  359
             GKSLTM F++G+++Q   ++NPT++V+TDRNDLD+QL +TF +        +LRQ P QA
Sbjct  306   GKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  360   ENRDDLKEKLKVASGGIIFTTVQKFFPDEKGMKHPLLSDRRNIVVIADEAHRSQYSFGAR  419
             E R +LK  L V SGGI+FTT+QKF P+++    + L++R+N++V+ADEAHR+QY+F A+
Sbjct  364   ETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAK  423

Query  420   VVDVKGASGQVEGKEITYGFAQHMRDALPNASFIGFTGTPIELSDKNTRAVFGEYISVYD  479
               D         G  I YG+A+ +RDALPNA+F+GFTGTP+  +DKNT+ VFG+YI VYD
Sbjct  424   YDD--------KGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYD  475

Query  480   IQRAVEDGATVRIYYESRLAKIALDEKERPKLDADFEEVTegeedlkkeklkSRWAQLEA  539
             + +AV DG+TV+IYYESR+  I+L+  +   LD  ++++TE++E+  K++LKS+W+++EA
Sbjct  476   MTQAVADGSTVKIYYESRV--IPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEA  533

Query  540   LVGAPKRVKLIAEDIVRHWEGRKAAMKGKAMIVCMSRRICVDMYNAIVKIRPNWHSENDA  599
             L GA  RV  +A DI++H E R+ AMKGK+MIV MSRRI VD+Y+ I++++P+WHS++D 
Sbjct  534   LAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDD  593

Query  600   EGSIKIIMTGSASDPAEYQPHVRSKQRREDMAKRFKKSADSLEIVIVRDMWLTGFDAPCA  659
              G IK++MTGS+SDP+ +Q H+ +K+RR+ + KR K   D L++VIVRDMWLTGFD P  
Sbjct  594   KGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSM  653

Query  660   HTMYVDKPMKGHGLMQAIARVNRVFEDKKGGLVVDYLGLADSLKSALANYTDSGGEGKPT  719
             HTMY+DKPMKGH LMQAIARVNRVF DK GGL+VDY+G+A+SLK AL +YT+S ++++ +
Sbjct  654   HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTA  712

Query  720   FDQDDAVAVMLEKYEICCGLFHGFDWTKFKSGSPAERLGIMPLAQEHILS-QKDGAERLI  778
             +D D AV +ML KY++  +++  +D +KF+S+  +ER   ++ + + +++   D  +R+I
Sbjct  713   IDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  779   QHVAELTNAMALAMPHDEAKKIVEDVAFFQAIKAVLTK-----PTTRQARTEEDMNRAIQ  833
             + V+EL +A AL   +  A+ + +++AFF+A+KA L K        +  +T  +++  I+
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  834   QIISRALVSDEVIDVFRAAGLKKPDVSILSDEFLMEIQGMKHKNLAIELLRRLLNDEIKT  893
             Q++S+++V+++VIDV+++ GL +PD+SILSD+FL +++G+K+KN+A+ELL RLL++++K+
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  894   RGQRNVVESRSFSKMLEDAIQKYKNRAIETVQVIEELIKLAKELRDAHARGEQLGLTEDE  953
               + N   S+ FS ML ++I+KY++R+IET +VIEELI+LAK++++ + RG++LGL  DE
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  954   MAFYDALEVSDSAVKIMGDKVLSEIARELVKSIKANVSIDWTVRENVRAKLRTVVKRILR  1013
             +AFYDAL   ++A   MGDK L  IA+EL K++K N+++DW+ R++ +AK+R  V+R+L+
Sbjct  953   IAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLK  1012

Query  1014  QSGYPPDKQEKAVETVLEQVERLSEQ  1039
             + GYPPD Q  AVE V+EQ E ++++
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAELMANN  1038

33) Metho_1322 in NC_019977


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  862 bits (3264),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 514/1084 (48%), Positives = 778/1084 (72%), Gaps = 61/1084 (5%)

Query  5     KITESGIEKFAIELLEHQGYRYVYAPDIAPDSDTPERDRFEDVLLLERLRTAVGRINPNV  64
             ++ E ++E+ A+E L+  GY Y  + +I+  S TPER    DV+L ERL  A+ +IN+++
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  65    PADAREDAIRQVRRLNSPELISNNETFHRMLTEGINV-SYQKDGNDRGDLVWLIDFNDTE  123
              +   E A++++   +SP+L+ NN TFH  L +GI++  Y+ +G+   ++V +IDF+  +
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  124   NNEFLVANQFTVIENDVNKRPDIILFVNGLPLVVIELKNPADENATVRSAFRQLQTYKQT  183
             NN+FL  NQ+T+++ D +KRPDI+LF+NGLP+VVIELKN+++E   V  +++QL+TYK  
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  184   IPSLFAYNGFMVISDGLEARSGSLSAGFTRFMTWKSSDGRVEASPLIGQLETLIKGMLEK  243
             IP LF++N  +V SDG+++++GSL+A + RFMTW+S DG+ E+SP ++ L+ LI GML+ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  244   TTLLDILRHFIVFEKSKKEDSTTGIITIRTVKKLASYHQYYAVNRAVESTLRASGYVAKE  303
              TLLD++R F++F+   K + +         K LA+YHQYYAVN+AV+ +L AS+     
Sbjct  244   ETLLDLIRYFVLFQDDGKGHIS---------KILAAYHQYYAVNKAVDRALLASS-----  289

Query  304   KWDWNTLGIQHESPESYGLPGVKKQPVGDRKGGVIWHTQGSGKSLSMVFYAGKIVLAMDN  363
                                        GD KGGVIWHTQGSGKSL+MVF++GK++  ++N
Sbjct  290   -------------------------EQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNN  324

Query  364   PTIVVITDRNDLDDQLFDTFA-----ASKQLLRQEPVQAENRNHLKELLNVVSGGIVFTT  418
             PT+VV+TDRNDLD+QL+ TF      ++K LLRQ P QAE R++LK LL+V SGGIVFTT
Sbjct  325   PTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTT  384

Query  419   IQKFQPEEGNVY-PQLSDRENIIVIADEAHRTQYGFRAKHVDVKDEQGNVIGKKIVYGFA  477
             +QKF+PE+ +   + L++R N+IV+ADEAHRTQYGF AK     D++G+ I     YG+A
Sbjct  385   MQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKY----DDKGEGIK----YGYA  436

Query  478   KYTRDALPNATFLGFTGTPIEKTDVNTPAVFGNYVDIYDISQSIEDGATVKIYYESRLAK  537
             KY RDALPNATF+GFTGTP+  TD NT  VFGNY+D+YD++Q++ DG+TVKIYYESR+  
Sbjct  437   KYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIP  496

Query  538   VALSSEGkklvaeldeeldkedlaeTQKIKAKWTQLEALIGSEARIKQIAQDIVTHFGQR  597
             + L+ ++  L    ++  + ++    Q++K+KW+++EAL G+ +R+  +A+DI+ HF  R
Sbjct  497   LNLP-QSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETR  555

Query  598   QEVFEGKGMIVTMSRRIAADLYEEMIRVKPQWHSDDLRKGAIKVVMTSASSDGPRISKHH  657
             Q+   GKGMIVTMSRRIA DLY+E+IR+KP+WHSDD  KG IKVVMT++SSD   + +H 
Sbjct  556   QQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHI  615

Query  658   TTKDQRRVLAERMKDPEDELQLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVN  717
               K +R +L  RMKD +DELQLVIVRDMWLTGFDVP +HTMYIDKPMKGH LMQAIARVN
Sbjct  616   GPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVN  675

Query  718   RVYKDKPGSLIVDYLGIASDLKEALSFYSDSGGKGDPAVLQEKAVQLMLEKLEIVSQMFH  777
             RV+KDKPG+LIVDY+GIA  LKEAL  Y++S ++++ A+  +KAV+LML K +++ +M+ 
Sbjct  676   RVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLY  734

Query  778   GFAFEDYFEADTSRKLSIILEAEEHILGL-ENGKKRYIDEVTALSKTFSLAIPHEQAMDV  836
              + +  +     S +   I ++ + ++GL E+ ++R+I  VT L+K+F+L   +  A ++
Sbjct  735   NLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  837   KDEISFYQAVKARLVKF----DSTGIGKTDEEIETAIRQVIDKALVTERVIDVFDAAGIK  892
             +DEI+F++AVKA LVK+          KT  E+E+ I Q++ +++VTE VIDV+++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  893   KPDISILSEDFLAEVRNMEHKNLAMEVLKKLLNDEIRARTKKNLVQSRSLMEMLENSIVR  952
             +PD+SILS+DFL +V  + +KN+A+E+L++LL++++++  K N   S+ + EML NSI +
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  953   YHNKVLTAAEVIEELIKLSKEIKRMDKEPQEMGLSEFEYAFYTAIADNESAREVMQKEQL  1012
             Y+++ + ++ VIEELI+L+K+IK+ ++  +E+GL+  E AFY A+A +E+A+E M   +L
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKEL  974

Query  1013  RELAVVLFEKVKQNASIDWTIKESVRAKLKVIVKRTLRQYGYPPDMQALATETVLRQAEL  1072
             R +A  L   VK+N ++DW+ ++S +AK++V V+R L++YGYPPD+Q +A E V+ QAEL
Sbjct  975   RAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1073  IADE  1076
             +A++
Sbjct  1035  MANN  1038

34) Lreu_0874 in NC_009513


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  861 bits (3262),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 513/1047 (49%), Positives = 767/1047 (74%), Gaps = 25/1047 (2%)

Query  6     NEENIEGIALRCLDEVGYQVYKSASYTSPNVEIDAERNNDHTQPILKGQLENALRKLNSG  65
             NE+++E +AL  L+ +GY+ YK ++   +   + +ER++D  + +L  +LE+ALRK+NS+
Sbjct  6     NEDDLEQVALEWLQSLGYD-YKKGN-EISMTSLTPERKSD-KDVVLHERLEKALRKINSD  62

Query  66    LDDEVYRNAIHQFEMLADSPDMMLNNHKLHELIIGGAKVKTSIKGEDRTITLYPI-DFKN  124
             ++     +A+H++  L  SP+++ NN  +HE +I G  +       +  + +  I DF  
Sbjct  63    IHPRFIEKALHELT-LEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEY  121

Query  125   VDNNTFIATNQFTMKQGEHERRPDITLFINGLPLVTFELKNPANANVGIQQAFAQFSTYK  184
              +NN F+A NQ+T+ +G+  +RPDI LFINGLP+V +ELKN++N  VG+++++ Q+ TYK
Sbjct  122   PQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  185   EEISSYMQYNEILIVSDGINARAGSLTAGIDRFMRWREPKN-VDIDDSMMELEVLIKYML  243
               I+    +NE+L+ SDGIN++AGSLTA  DRFM WR      +   ++  L+VLI  ML
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGML  241

Query  244   TPSDLLNIIQNFILFESDGDKTI-KILAAYHQYYMVNKAVKRTSKVLADPDDKRIGVVWH  302
              P  LL++I+ F+LF+ DG   I KILAAYHQYY VNKAV R+    ++ +D + GV+WH
Sbjct  242   NPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWH  301

Query  303   TTGSGKSLSMVFYSGIVARKLGNPTILVINDRNDLDDQLFGTFA-----AAHEYLQQNPD  357
             T GSGKSL+MVF+SG + + L NPT++V+ DRNDLD+QL++TF      ++   L+Q P 
Sbjct  302   TQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  358   HAESRGEVRKYMSKNSGGIVFSTIQKFSPNFDAGEEHMPILTNRSNVIVMVDEAHRSQYG  417
             +AE+R E++  +S +SGGIVF+T+QKF P  +  E  M+ LT+R NVIVM DEAHR+QYG
Sbjct  362   QAETRKELKSLLSVESGGIVFTTMQKFEP--EQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  418   MQAKLTD--NGIRYGYAKYLREALPNASFIGFTGTPINTEDKSTVAMFGNYIDVYDITQA  475
              +AK  D  +GI+YGYAKYLR+ALPNA+F+GFTGTP+ + DK+T  +FGNYIDVYD+TQA
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  476   VNDHATVRIYYESHVFPLKLKDN-AIDE-YQKLIKEAGINDDPNLRETERRNRAFTRLEA  533
             V D +TV+IYYES+V+PL+L ++  +DE Y+      +I +D +    +R +   +R+EA
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLDLDEAYN------DITEDQEEDVKQRLKSKWSRIEA  533

Query  534   LAGAKPRLEKIAQHFVHHFESRQKEEFGKSMIVEMSRQNAVKLYNEIAKLRPEWINDDIH  593
             LAGAKPR+E +A+++++HFE+RQ+   GK+MIV MSR+ AV LY+EI +L+PEW +DD +
Sbjct  534   LAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDD  593

Query  594   KGKIKVIMTSNASDGPEFAKFKTSKQDRFTLQQRMKDNDDELQIVIVVDMWLTGFDVPSM  653
             KG IKV+MT+++SD   F +   +K+ R  L++RMKD DDELQ+VIV DMWLTGFDVPSM
Sbjct  594   KGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSM  653

Query  654   NTMYIDKPMQGHNLIQAIARVNRVFKNKDSGLIVDYIGIADALRFALNVYTKDDQGKVGI  713
             +TMYIDKPM+GHNL+QAIARVNRVFK+K +GLIVDY+GIA++L+ AL+ YT  DQ++ +I
Sbjct  654   HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAI  713

Query  714   NVDRALMLLKEKYDIIKEDFLYGIDYSEFDSDDSQTRQKAVTRVVNELAAEDDETKQKFF  773
             + D+A+ L+  KYD+I +D LY +DYS F+SD    R  +++  ++ + + +++ +Q+F+
Sbjct  714   DTDKAVELMLLKYDVI-QDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  774   DVVTELQKAYALVSTQPEAQDLSAEIAFFKTVKVFLTKLEAPDDPDDSKEIHSSVDYRMQ  833
               VTEL KA+AL +T+P AQ+L+ EIAFFK+VK  L KL  P   + ++   + V+  ++
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  834   QLLDQSIISEPNVDIYRDLGLERPNLDLISEQFLEKVNEITEKDLAITLLEKLLKGQVKA  893
             QL+ QS+++E  +D+Y+ LGLE+P+L ++S++FL  V+ + +K++A+ LL++LLKGQVK+
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  894   YQKTNIVKGKKFEELLQESIDDYNRRGITSEIVIRKLIDMAKEINKEQQEGKNLGLSKEE  953
               KTN   +K+F E+L +SI+ YN R+I +  VI  LI++AK+I++EQQ G++LGL+ +E
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  954   VAFYDALADHEKAVQELGEEKLHLIAAELVKTVKQQSGVDWERRSNVRAKMRVAVKHLLR  1013
             +AFYDALA HE A + +G+  L+ IA EL KTVK++ GVDW +R + +AKMRVAV++LL+
Sbjct  953   IAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLK  1012

Query  1014  KYGYPPDIAPDAIKTVVKQAEQMASQE  1040
             KYGYPPD+   A+  VV QAE MA+++
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAELMANNQ  1039

35) LAR_0819 in NC_010609


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  861 bits (3262),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 513/1047 (49%), Positives = 767/1047 (74%), Gaps = 25/1047 (2%)

Query  6     NEENIEGIALRCLDEVGYQVYKSASYTSPNVEIDAERNNDHTQPILKGQLENALRKLNSG  65
             NE+++E +AL  L+ +GY+ YK ++   +   + +ER++D  + +L  +LE+ALRK+NS+
Sbjct  6     NEDDLEQVALEWLQSLGYD-YKKGN-EISMTSLTPERKSD-KDVVLHERLEKALRKINSD  62

Query  66    LDDEVYRNAIHQFEMLADSPDMMLNNHKLHELIIGGAKVKTSIKGEDRTITLYPI-DFKN  124
             ++     +A+H++  L  SP+++ NN  +HE +I G  +       +  + +  I DF  
Sbjct  63    IHPRFIEKALHELT-LEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEY  121

Query  125   VDNNTFIATNQFTMKQGEHERRPDITLFINGLPLVTFELKNPANANVGIQQAFAQFSTYK  184
              +NN F+A NQ+T+ +G+  +RPDI LFINGLP+V +ELKN++N  VG+++++ Q+ TYK
Sbjct  122   PQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  185   EEISSYMQYNEILIVSDGINARAGSLTAGIDRFMRWREPKN-VDIDDSMMELEVLIKYML  243
               I+    +NE+L+ SDGIN++AGSLTA  DRFM WR      +   ++  L+VLI  ML
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGML  241

Query  244   TPSDLLNIIQNFILFESDGDKTI-KILAAYHQYYMVNKAVKRTSKVLADPDDKRIGVVWH  302
              P  LL++I+ F+LF+ DG   I KILAAYHQYY VNKAV R+    ++ +D + GV+WH
Sbjct  242   NPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWH  301

Query  303   TTGSGKSLSMVFYSGIVARKLGNPTILVINDRNDLDDQLFGTFA-----AAHEYLQQNPD  357
             T GSGKSL+MVF+SG + + L NPT++V+ DRNDLD+QL++TF      ++   L+Q P 
Sbjct  302   TQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  358   HAESRGEVRKYMSKNSGGIVFSTIQKFSPNFDAGEEHMPILTNRSNVIVMVDEAHRSQYG  417
             +AE+R E++  +S +SGGIVF+T+QKF P  +  E  M+ LT+R NVIVM DEAHR+QYG
Sbjct  362   QAETRKELKSLLSVESGGIVFTTMQKFEP--EQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  418   MQAKLTD--NGIRYGYAKYLREALPNASFIGFTGTPINTEDKSTVAMFGNYIDVYDITQA  475
              +AK  D  +GI+YGYAKYLR+ALPNA+F+GFTGTP+ + DK+T  +FGNYIDVYD+TQA
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  476   VNDHATVRIYYESHVFPLKLKDN-AIDE-YQKLIKEAGINDDPNLRETERRNRAFTRLEA  533
             V D +TV+IYYES+V+PL+L ++  +DE Y+      +I +D +    +R +   +R+EA
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLDLDEAYN------DITEDQEEDVKQRLKSKWSRIEA  533

Query  534   LAGAKPRLEKIAQHFVHHFESRQKEEFGKSMIVEMSRQNAVKLYNEIAKLRPEWINDDIH  593
             LAGAKPR+E +A+++++HFE+RQ+   GK+MIV MSR+ AV LY+EI +L+PEW +DD +
Sbjct  534   LAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDD  593

Query  594   KGKIKVIMTSNASDGPEFAKFKTSKQDRFTLQQRMKDNDDELQIVIVVDMWLTGFDVPSM  653
             KG IKV+MT+++SD   F +   +K+ R  L++RMKD DDELQ+VIV DMWLTGFDVPSM
Sbjct  594   KGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSM  653

Query  654   NTMYIDKPMQGHNLIQAIARVNRVFKNKDSGLIVDYIGIADALRFALNVYTKDDQGKVGI  713
             +TMYIDKPM+GHNL+QAIARVNRVFK+K +GLIVDY+GIA++L+ AL+ YT  DQ++ +I
Sbjct  654   HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAI  713

Query  714   NVDRALMLLKEKYDIIKEDFLYGIDYSEFDSDDSQTRQKAVTRVVNELAAEDDETKQKFF  773
             + D+A+ L+  KYD+I +D LY +DYS F+SD    R  +++  ++ + + +++ +Q+F+
Sbjct  714   DTDKAVELMLLKYDVI-QDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  774   DVVTELQKAYALVSTQPEAQDLSAEIAFFKTVKVFLTKLEAPDDPDDSKEIHSSVDYRMQ  833
               VTEL KA+AL +T+P AQ+L+ EIAFFK+VK  L KL  P   + ++   + V+  ++
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  834   QLLDQSIISEPNVDIYRDLGLERPNLDLISEQFLEKVNEITEKDLAITLLEKLLKGQVKA  893
             QL+ QS+++E  +D+Y+ LGLE+P+L ++S++FL  V+ + +K++A+ LL++LLKGQVK+
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  894   YQKTNIVKGKKFEELLQESIDDYNRRGITSEIVIRKLIDMAKEINKEQQEGKNLGLSKEE  953
               KTN   +K+F E+L +SI+ YN R+I +  VI  LI++AK+I++EQQ G++LGL+ +E
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  954   VAFYDALADHEKAVQELGEEKLHLIAAELVKTVKQQSGVDWERRSNVRAKMRVAVKHLLR  1013
             +AFYDALA HE A + +G+  L+ IA EL KTVK++ GVDW +R + +AKMRVAV++LL+
Sbjct  953   IAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLK  1012

Query  1014  KYGYPPDIAPDAIKTVVKQAEQMASQE  1040
             KYGYPPD+   A+  VV QAE MA+++
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAELMANNQ  1039

36) Spica_2695 in NC_015732


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  861 bits (3262),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/1078 (47%), Positives = 782/1078 (73%), Gaps = 55/1078 (5%)

Query  5     NLTESAIEDLAIKLFKSLGYHHLYGPDSAPEGKHPERSSFEDVILVNRLRDAVKKINPHI  64
             ++ E  +E++A+  ++SLGY+   G + +  +  PER S  DV+L +RL  A++KIN++I
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  65    PQQSLDDAIRQVLRFPSQELIANNQSFHRLLTEGVKI-SYHKDGSERGDLVWLIDFKHPE  123
               + ++ A++++    S +L+ NN +FH  L +G+ I  Y+ +G    ++V +IDF  P+
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  124   NNEFVVVNQFAVIENHQNKRPDVVLFVNGLPLVVIELKNAADENATIQSAYNQIQTYKQA  183
             NN+F+ VNQ+++++ + +KRPD+VLF+NGLP+VVIELKN+++E   ++ +Y+Q++TYK  
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  184   IPGFFTYNEIIVISDGLEARSGSLSAGLDRFVAWKSVDGRIEASSLESQLTTLIKGMLTP  243
             IP +FT+NE++V SDG+++++GSL+A  DRF++W+S DG+ E+S+  + L  LI GML P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  244   LTLIDIIRHFIVYEASKHEDPETGLTVIRTVKKIAAYHQYYAVNRAVASTIRAAGYEQAA  303
              TL+D+IR F++++              +  K +AAYHQYYAVN+AV  ++ A++ EQ+ 
Sbjct  244   ETLLDLIRYFVLFQDDGKG---------HISKILAAYHQYYAVNKAVDRALLASS-EQG-  292

Query  304   QLPVAAPWPASLKEDPEAYGLPSVREQPVHDKKAGVIWHTQGSGKSLSMVFYTGKVVLTL  363
                                           D K+GVIWHTQGSGKSL+MVF++GK++  L
Sbjct  293   ------------------------------DGKGGVIWHTQGSGKSLTMVFFSGKLIQML  322

Query  364   DNPTVVVITDRNDLDDQLFTTFA-----ASKQLLRQEPVQAESRDHLKQLLRVASGGIVF  418
             +NPT+VV+TDRNDLD+QL++TF      ++K LLRQ P QAE+R +LK LL V SGGIVF
Sbjct  323   NNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVF  382

Query  419   TTIQKFQPDEGNVY-DVLSNRNNIIVIVDEAHRTQYGFQAKVDANTGAITYGFAKYLRDA  477
             TT+QKF+P++ +     L++R+N+IV+ DEAHRTQYGF+AK D +  +I YG+AKYLRDA
Sbjct  383   TTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDA  442

Query  478   LPNATYIGFTGTPIEKTDRNTPAVFGNYIDIYDIAQAVADGTTVRIFYESRLAKIALSDE  537
             LPNAT++GFTGTP+  TD+NT  VFGNYID+YD++QAVADG+TV+I+YESR+  + L+ +
Sbjct  443   LPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP-Q  501

Query  538   GKKlvqeldeellqdeMPEAQKAKAKWTQLEALVGSQERLKQIANDIVTHFEARQEVFEG  597
             +  L +  ++   ++E    Q+ K+KW+++EAL G++ R+  +A+DI+ HFE+RQ+   G
Sbjct  502   SLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKG  561

Query  598   KGLIVTMSRRIAAALYDEIIHIRPAWHSDDLKKGAIKVVMTSASSDGPEIAKHYTSKEDR  657
             KG+IVTMSRRIA  LYDEII+++P WHSDD  KG IKVVMT++SSD   + +H  +K  R
Sbjct  562   KGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRR  621

Query  658   RLLAERMKDPQDELKLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVNRVYKDK  717
              LL  RMKD +DEL+LVIVRDMWLTGFDVP +HTMYIDKPMKGH LMQAIARVNRV+KDK
Sbjct  622   NLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDK  681

Query  718   PGGLIVDYLGIAADLKEALSFYADNGGKGDPALLQEEAVRLMLEKYEIVTDLLHGFAYKH  777
             PGGLIVDY+GIA  LKEAL  Y++ +++++ A+  + AV LML KY+++ D+L  + Y  
Sbjct  682   PGGLIVDYVGIAESLKEALKEYTE-SDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSK  740

Query  778   YCTADTAAKLSIILEAEEFILGL-ENGRKRYIDEVTALSKAFAIAIPDEQALAIKDEVAF  836
             + +   + +   I ++ ++++GL E+ R+R+I  VT L+KAFA+   +  A  ++DE+AF
Sbjct  741   FNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAF  800

Query  837   FQAVKSRLVKF----AGTSGGKTNEEIETAIRQVIDKALVTGEVIDVFDAAGIKKPDISI  892
             F+AVK+ LVK+          KT  E+E+ I Q++ +++VT +VIDV+++ G+ +PD+SI
Sbjct  801   FKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSI  860

Query  893   LSEEFLLEVKNMKHKNIAMEVLKKILNDEIKARTRTNLVQSKSLLELLENAIKRYQNQVL  952
             LS++FL +V  +K+KN+A+E+L+++L++++K+  +TN   SK + E+L N+I++Y+++ +
Sbjct  861   LSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSI  920

Query  953   TAAQLIEELIDLAKDIKKMDEEPEAMGLSEFEYAFYSAVANNESARELMGKDKLRELAVA  1012
              ++++IEELI+LAKDIK+ ++  + +GL+  E AFY A+A++E+A+E MG   LR +A  
Sbjct  921   ETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHE  980

Query  1013  LYEQVRQNASIDWTIKESVRSKLKVAVKRTLKRYGYPLDMEALATETVLKQAELIADE  1070
             L   V++N ++DW+ ++S ++K++VAV+R LK+YGYP D++ +A E V+ QAEL+A++
Sbjct  981   LTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

37) Veis_3131 in NC_008786


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  860 bits (3258),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 507/1075 (48%), Positives = 772/1075 (72%), Gaps = 54/1075 (5%)

Query  1     MAF-LAEADIEQALLTQLRRLGYSIASDDVIGPDGNAPERESHDVVVLHKRLETAVLRLN  59
             M F + E D+EQ  L  L+ LGY    ++ I+  + +PER S+  VVLH RLE A+ ++N
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  60    PALPPEARADAIRKLTQSEFPALLEENRRIHTLLTEGVDVEYYGDDGVLTAGKVRLLDFD  119
             + + P     A++ LT    P LLE+N  +H  L +G+++E Y+D+G      V+++DF+
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  120   TPENNDWLAVQQFVVINGQVNRRPDVVLFVNGLPLAVIELKAPGSAGAHLAGAFNQLQTY  179
              P+NND LAV+Q+ ++NG+ ++RPD+VLF+NGLP+ VIELK + +    + ++++QL+TY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KQQIPALFHTNALLVTSDGIAARVGSLSADLERFMPWRTTDGSAIAPKGSPELATLIEGV  239
             K +IP LF  N +LVTSDGI ++ GSL+A+ +RFM WR+ DG + ++ G + L  LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  240   FAPQRFLDLLRYFTVFGETGSG-LTKIVAGYHQFHAVNRAVESTIRASSQWQGVREEPAS  298
             + P+ +LDL+RYF +F + G G ++KI+A+YHQ+ AVN+AV+ ++ ASS+          
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSE----------  290

Query  299   YGLPSVAMQARGDRRAGVIWHTQGSGKSLLMAFYAGRLVQHPAMENPTLVVLTDRNDLDD  358
                       +GD ++GVIWHTQGSGKSL M F++G+L+Q   ++NPTLVV+TDRNDLD+
Sbjct  291   ----------QGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDN  338

Query  359   QLFSTFSMCRD-----LIRQKPVQAEGREHLQQLLARASGGVIFTTLQKFG-----EVAE  408
             QL+STF   ++     L+RQ P QAE R +L+ LL+  SGG++FTT+QKF          
Sbjct  339   QLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMA  398

Query  409   PLTTRRNVVVIADEAHRSQYGFRAKVDAKTGEVSYGFAKYLRDALPNASFIGFTGTPIEA  468
             +LT R+NV+V+ADEAHR+QYGF AK D K   + YG+AKYLRDALPNA+F+GFTGTP+ +
Sbjct  399   ALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVAS  458

Query  469   TDVNTLAVFGNYIDVYDISRAVEDGATVPIYYESRLARIELDEDEKPKLNAEVEALTEDE  528
             TD NT  VFGNYIDVYD+++AV DG+TV IYYESR+  ++L +     L+   + +TED+
Sbjct  459   TDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQ  516

Query  529   AVTEQEKLKAKWATVEKLVGSDKRLALVAQDLVAHFEDRLTALDGKAMVVCMSRRIAVAL  588
                 +++LK+KW+ +E L G+  R+  +A+D++ HFE R  A+ GK+M+V MSRRIAV L
Sbjct  517   EEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDL  576

Query  589   YDEIIKLRPDWHSTDDAAGAVKIVMTGAASDPPAWQQHIGNkarrdllakrardakdPLK  648
             YDEII+L+P+WHS DD  G +K+VMTG++SDP + Q+HIG K RR+LL KR +D  D L+
Sbjct  577   YDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQ  636

Query  649   LVIVRDMWLTGFDAPCMHTMYVDKPMQGHGLMQAIARVNRVFLDKPAGLIVDYIGIAQSL  708
             LVIVRDMWLTGFD P MHTMY+DKPM+GH LMQAIARVNRVF DKP+GLIVDY+GIA+SL
Sbjct  637   LVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESL  696

Query  709   KSALAQYSAGDRANTGVDEAQAVAVMQEKYEVVRDMYHGFDYATALNGTPQQRLAMMAGA  768
             K AL +Y+ +D+A+T++D  +AV +M  KY+V++DM   +DY+   ++   +R   ++ +
Sbjct  697   KEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNT  756

Query  769   IEWILDKQQQWTAAETTDEGKKNAQRRYQDAVlalskayslasasDEARGIREEIGFFQA  828
             ++ +++  +             + ++R+  +V  L+KA++L ++   A+ + +EI+FF+A
Sbjct  757   MDYVIGLGE-------------DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKA  803

Query  829   IRAALVK-----SATGSGVTSQERDFAIQQIVSRAVISTEIVDILKAAGIQSPDLSILSD  883
             ++A+LVK         +  T+ E +  I+Q+VS++V++ +++D+ ++ G++ PDLSILSD
Sbjct  804   VKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSD  863

Query  884   EFLAEVQQMQKKNLALEALRKLINDGIRSRSKANIVQTRAFSERLEDAVARYHANAITTA  943
             +FL +V+ +++KN+A+E L +L+++ ++S  K+N   ++ FSE L +++ +Y++ +I T+
Sbjct  864   DFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETS  923

Query  944   EVLQELIQLAKDIRAARQRGEEAGLSDEEIAFYDALAENESAVQAMGDDKLKVIAHELLG  1003
              V++ELIQLAKDI+  +QRG+E GL+ +EIAFYDALA +E+A +AMGD  L+ IAHEL  
Sbjct  924   KVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTK  983

Query  1004  SLKGNVSVDWAHRDSARARMRVLVKRILRKYGYPPDLQDAAVQTVLQQAEALSAG  1058
             ++K N++VDW+ RDSA+A+MRV V+R+L+KYGYPPDLQ  AV+ V++QAE ++  
Sbjct  984   TVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

38) LRI_1098 in NC_021494


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  859 bits (3253),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 510/1047 (49%), Positives = 767/1047 (74%), Gaps = 25/1047 (2%)

Query  6     NEENIEGIALRCLDEVGYQVYKSASYTSPNVEIDAERNNDHTQPILKGQLENALRKLNPG  65
             NE+++E +AL  L+ +GY+ YK ++   +   + +ER++D  + +L  +LE+ALRK+N++
Sbjct  6     NEDDLEQVALEWLQSLGYD-YKKGN-EISMTSLTPERKSD-KDVVLHERLEKALRKINSD  62

Query  66    LDDEVYRNAIHQFEMLADSPDMMLNNHKLHELIIGGAKVKTSIKGEDRTITLYPI-DFKN  124
             ++     +A+H++  L  SP+++ NN  +HE +I G  +       +  + +  I DF  
Sbjct  63    IHPRFIEKALHELT-LEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEY  121

Query  125   VDSNTFVATNQFTMKQGEHERRPDITLFINGLPLVTFELKNPANANVGIQQAFAQFSTYK  184
              ++N F+A NQ+T+ +G+  +RPDI LFINGLP+V +ELKN++N  VG+++++ Q+ TYK
Sbjct  122   PQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  185   EEISSYMQYNEILIVSDGINARAGSLTAGIDRFMRWREPKN-VDIDDSMMELEVLIKYML  243
               I+    +NE+L+ SDGIN++AGSLTA  DRFM WR      +   ++  L+VLI  ML
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGML  241

Query  244   TPSDLLNIIQNFILFESDGDKTI-KILAAYHQYYMVNKAVKRTSKVLADPDDKRIGVVWH  302
              P  LL++I+ F+LF+ DG   I KILAAYHQYY VNKAV R+    ++ +D + GV+WH
Sbjct  242   NPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWH  301

Query  303   TTGSGKSLSMVFYSGIVARKLGNPTILVINDRNDLDDQLFGTFA-----AAHEYLQQNPD  357
             T GSGKSL+MVF+SG + + L NPT++V+ DRNDLD+QL++TF      ++   L+Q P 
Sbjct  302   TQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  358   HAESRGEVRKYMSKNSGGIVFSTIQKFSPNFDAGEEHMPILTNRSNVIVIVDEAHRSQYG  417
             +AE+R E++  +S +SGGIVF+T+QKF P  +  E  M+ LT+R NVIV+ DEAHR+QYG
Sbjct  362   QAETRKELKSLLSVESGGIVFTTMQKFEP--EQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  418   MQAKLTD--NGIRYGYAKYLREALPNASFIGFTGTPINTEDKSTVAMFGNYIDVYDITQA  475
              +AK  D  +GI+YGYAKYLR+ALPNA+F+GFTGTP+ + DK+T  +FGNYIDVYD+TQA
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  476   VNDHATVRIYYESHVFPLKLKDN-AIDE-YQKLIKEAGINDDPNLRETERRNRAFTRLEA  533
             V D +TV+IYYES+V+PL+L ++  +DE Y+      +I +D +    +R +   +R+EA
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLDLDEAYN------DITEDQEEDVKQRLKSKWSRIEA  533

Query  534   LAGAKPRLEKIAQHFVHHFESRQKEEFGKSMIVEMSRQNAVKLYNEIAKLRPEWINDDIH  593
             LAGAKPR+E +A+++++HFE+RQ+   GK+MIV MSR+ AV LY+EI +L+PEW +DD +
Sbjct  534   LAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDD  593

Query  594   KGKIKVIMTSNASDGPEFAKFKTSKQDRFTLQQRMKDNDDELQIVIVVDMWLTGFDVPSM  653
             KG IKV+MT+++SD   F +   +K+ R  L++RMKD DDELQ+VIV DMWLTGFDVPSM
Sbjct  594   KGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSM  653

Query  654   NTMYIDKPMQGHNLIQAIARVNRVFKNKDSGLIVDYIGIADALRFALNVYTKDDQGKVGI  713
             +TMYIDKPM+GHNL+QAIARVNRVFK+K +GLIVDY+GIA++L+ AL+ YT  DQ++ +I
Sbjct  654   HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAI  713

Query  714   NVDRALMLLKEKYDIIKEDFLYGIDYSEFDSDDSQTRQKAVTRVVNELAAEDDETKQKFF  773
             + D+A+ L+  KYD+I +D LY +DYS F+SD    R  +++  ++ + + +++ +Q+F+
Sbjct  714   DTDKAVELMLLKYDVI-QDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  774   DVVTELQKAYALVSTQPEAQDLSAEIAFFKTVKVFLTKLEAPDDPDDSKEIHSSVDYRMQ  833
               VTEL KA+AL +T+P AQ+L+ EIAFFK+VK  L KL  P   + ++   + V+  ++
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  834   QLLDQSIISEPNVDIYRDLGLERPNLDLISEQFLEKVNEITEKDLAITLLEKLLKGQVKA  893
             QL+ QS+++E  +D+Y+ LGLE+P+L ++S++FL  V+ + +K++A+ LL++LLKGQVK+
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  894   YQKTNIVKGKKFEELLQESIDDYNKRGITSEIVIRKLIDMAKEINKEQQEGKNLGLSKEE  953
               KTN   +K+F E+L +SI+ YN R+I +  VI  LI++AK+I++EQQ G++LGL+ +E
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  954   VAFYDALADHEKAVQELGEEKLHLIAAELVKTVKQQSGVDWERRSNVRAKMRVAVKHLLR  1013
             +AFYDALA HE A + +G+  L+ IA EL KTVK++ GVDW +R + +AKMRVAV++LL+
Sbjct  953   IAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLK  1012

Query  1014  KYGYPPDIAPDAIKTVVKQAEQMASQE  1040
             KYGYPPD+   A+  VV QAE MA+++
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAELMANNQ  1039

39) Dacet_2560 in NC_013943


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  854 bits (3235),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 493/1045 (48%), Positives = 765/1045 (74%), Gaps = 39/1045 (3%)

Query  6     EDTLEYVLIDLFKELGYDYAFAPDFTMVDDDGGDYERISTDEVILTKRLKRKLMEINPEV  65
             ED LE V ++ ++ LGYDY  + +++M        ER S  +V+L  RL + L  IN+++
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMTSLTP---ERKSDKDVVLHERLEKALRKINSDI  63

Query  66    GEEQIDEAIKKLSNPESVKLIDNNRAFHKYVTDGISIP-YHEDGETKTAIINLFDFKDIS  124
                 I+ A+  L+   S +L++NN +FH  + +GI I  Y+++G++   I++++DF    
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  125   NNDWLVANQFTVTEAKEKRRPDVIVFVNGLPLAVIELKNPSDEKATMFDAFTQLQNYKNF  184
             NND L  NQ+T+ ++  K+RPD+++F+NGLP+ VIELKN+++E   + D++ QL+ YK  
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  185   IPNLFNYNEILIASDGYSATAGSLTADWERFMPWKTVNGEKDPK-GMIQLEVLIRGMFDK  243
             IP+LF +NE+L++SDG ++ AGSLTA+ +RFM W++ +G+ ++  G+  L+VLI+GM++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  244   ERFLDIIRNFIVF-EVSDDKIIKKMAGYHQYHAVNKALSRTVEATSEKGDKRIGVVWHTQ  302
             E +LD+IR F++F + + + I K +A+YHQY AVNKA+ R++ A+SE+GD + GV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  303   GSGKSLSMVFYSGKVVQKLELSNPTLVVLTDRNDLDEQLFGNFSLCSD-----LLRQKPV  357
             GSGKSL+MVF+SGK++Q L+  NPTLVV+TDRNDLD+QL++ F    +     LLRQ P 
Sbjct  304   GSGKSLTMVFFSGKLIQMLN--NPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  358   QATSRAHLRELLNVASGGIVFTTIQKFFPKEDEDSHPELSPRRNIIVMADEAHRSQYDFI  417
             QA +R +L+ LL+V SGGIVFTT+QKF P ++E + + L+ R+N+IVMADEAHR+QY+F 
Sbjct  362   QAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFN  421

Query  418   D-----------GFARHMRDALPGAAFIGFTGTPIETSDKVTTSVFGSYIDIYDMEDAVN  466
                         G+A+ +RDALP A+F+GFTGTP+ ++DK T  VFG+YID+YDM +AV 
Sbjct  422   AKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  467   DGATVRIYYEARLAKIDFDEVEKPKVDPEFEQVTEDQEKFEKQKLQAKWTALEALVGATS  526
             DG+TV+IYYE+R+  +++ +     +D  ++++TEDQE   KQ+L++KW+ +EAL GA +
Sbjct  482   DGSTVKIYYESRVIPLNLPQ--SLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  527   RLELVAKDIVEHFEDRLSAMDGKAMVVCMSRRICVELYNEIAKLRPDWHDEDDKQGFIKI  586
             R+E +AKDI++HFE R  AM GK+M+V MSRRI V+LY+EI +L+P+WH +DD +G IK+
Sbjct  540   RVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  587   IMSGSASDKEEWQPHIRTKQQREELANRFKKPDTDFKLVIVRDMWLTGFDAPCMHTMYVD  646
             +M+GS+SD    Q HI  K++R+ L +R K  D +++LVIVRDMWLTGFD P MHTMY+D
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  647   KPMGGHNLMQAIARVNRVFKDKPGGLVVDYIGIADDLKNAMRNYTASGGKGKSHHDKDEA  706
             KPM GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+A+++YT S +++++  D D A
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKA  718

Query  707   AAYMMEKFEQVIDLMHDFDYEAILHSKEKERLDGIYEAMEYVLSI--DRKMDFIKMVTEL  764
                M+ K++ + D++ ++DY  +   K  ER   I ++M+YV+++  D +  FIK VTEL
Sbjct  719   VELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTEL  778

Query  765   SRAFALAVPAPQTVEVRDYLALFQEIKAAIIKNTITP----EKKSPDELNTALKQLVSKA  820
             ++AFAL    P + E+ D +A+F+ +KA+++K    P     +K+P E+++ ++QLVS++
Sbjct  779   GKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQS  838

Query  821   VTANGVVDVFGAAGLDKPEISILSDEFLAEVKEYPYKNLAVEMLAKLLADEIKIKLKRNV  880
             V +++V+DV+ + GL++P++SILSD+FL +V     KN+AVE+L +LL +++K  +K N 
Sbjct  839   VVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNA  898

Query  881   VKSRSFIERLEESMKNYQNRSIEAAMVIQHLIDLAKEMRKEAERGNDLGLSDDEIAFYDA  940
               S+ F E L +S+++Y++RSIE++ VI++LI+LAK++++E +RGN+LGL+ DEIAFYDA
Sbjct  899   TVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDA  958

Query  941   LLTENAAFGERLLKEMGD-ELKVVAVELVQAVKKNVTIDWTKRDAVKAKLRVIVKRILRK  999
             L ++++A        MGD EL+ +A EL ++VK N+ +DW+KRD+ KAK+RV V+R+L+K
Sbjct  959   LASHETA-----KEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKK  1013

Query  1000  YGYPPEASDKATQTVLEQAAALCEE  1024
             YGYPP+    A + V+EQA  + ++
Sbjct  1014  YGYPPDLQKMAVEQVVEQAELMANN  1038

40) Cyan7425_3142 in NC_011884


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  853 bits (3229),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/1053 (48%), Positives = 781/1053 (75%), Gaps = 35/1053 (3%)

Query  6     TEDQIEAYNLELLDALGYSYKHGSTIEPEGAAPERQSFGDVLLKDRLNEVIGRINSHIPP  65
              ED++E   LE L++LGY YK G+ I   + +PER+S  DV+L +RL+  + +INS+I P
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  66    EIRQQAQRELQNIASPDLISNNEAFHRYLTEGITVE-YTKNGEIKGEQLWLIDWDNPDNN  124
              + ++A +EL    SP+L+ NN +FH  L +GI +E Y  +G+   E + +ID + P+NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  125   EFLAVNQFTVIEDNHNRRPDIILFINGLPLVVIElknaadakanlqaaHNQLQTYKREIP  184
             +FLAVNQ+T+++++ ++RPDI+LFINGLP+VVIELKN+++    ++ + +QL+TYK  IP
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  185   SLFTYNALLVISDGISARAGSLSAPYSRFSQWKRKLPNGEIDNNPDTNELEILTQGMLNK  244
              LFT+N +LV SDGI+++AGSL+A Y RF  W+ K  +G+ +++P+   L++L +GMLN 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK--DGQTESSPGLASLDVLIHGMLNP  243

Query  245   ATLLDLIRHFTVFEKVKIVDPNTEVVTLQTIKKLAAYHQYYAVNLAVESVI--AATRSNY  302
              TLLDLIR F +F+     D + ++  +     LAAYHQYYAVN AV+  +  ++ +++ 
Sbjct  244   ETLLDLIRYFVLFQD----DGKGHISKI-----LAAYHQYYAVNKAVDRALLASSEQGDG  294

Query  303   RGGVVWHTQGSGKSLSMVFLSGKLVLALDNPTIVVLTDRNDLDDQLFDTFAGCRQ-----  357
             +GGV+WHTQGSGKSL+MVF+SGKL+  L+NPT+VV+TDRNDLD+QL+ TF   +      
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKG  354

Query  358   LLRQDPQQADNRDAVRELLNVASGGIIFTTVQKFAPVEGETLYPKISDRTNIVVLADEAH  417
             LLRQ P+QA+ R  ++ LL+V SGGI+FTT+QKF P + ET  + +++R N++V+ADEAH
Sbjct  355   LLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAH  414

Query  418   RSQYGFKAKQVNIKDEQGNVVGKQTRYGFAKYIRDALPKATFVGFTGTPVEQTDKNTPQV  477
             R+QYGF+AK     D++G+ +    +YG+AKY+RDALP+ATFVGFTGTPV  TDKNT  V
Sbjct  415   RTQYGFNAKY----DDKGEGI----KYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMV  466

Query  478   FGSYIDVYDIAQAVEDGATVPIYYESRLVKVdldehgrelldeldedlsfedlGSTQQAK  537
             FG+YIDVYD++QAV DG+TV IYYESR++ ++L +         D     E+ +  Q+ K
Sbjct  467   FGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEE-DVKQRLK  525

Query  538   ARQTQLEAIVGSTQRLETIAQDIITHFEKRQTANRGKGMIVTLSRQIAANLYDNIIKLRP  597
             ++ +++EA+ G+  R+E++A+DII HFE RQ A +GKGMIVT+SR+IA +LYD+II+L+P
Sbjct  526   SKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKP  585

Query  598   GWHSDDLNSGKIKVVMTASASDAGNLVAHHTSKKDRQVLAQRLKDPDNDLELVIVCDMWL  657
              WHSDD + G IKVVMT+S+SD+ ++  H  +KK R++L +R+KD D++L+LVIV DMWL
Sbjct  586   EWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWL  645

Query  658   TGFDAPCLHTMYIDKPMKGHNLMQAIARINRVYFEKQGGLIVDYLGVAQELKNALSFYSQ  717
             TGFD P +HTMYIDKPMKGHNLMQAIAR+NRV+ +K GGLIVDY+G+A+ LK+AL  Y++
Sbjct  646   TGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTE  705

Query  718   SGGKGDLTVDQDVAIGLLLRTLEVVEGIMAEFNYQPYFTASTGDKLNILKSATNYVA--D  775
             S ++++ ++D D A+ L+L   +V+++++ +++Y  + +   +++   + ++ +YV   +
Sbjct  706   S-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLG  764

Query  776   PQIKDRFLDAVTALSKSYALIAHHPEAIAQAEKISFFQAIQASLRKL--EPSDGSL--SN  831
              + ++RF+ +VT L+K++AL A +P A    + I+FF+A++A+L KL   P +G    + 
Sbjct  765   EDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTP  824

Query  832   ADIETAIRQVVDQALVSDTVINIFDEAGIKSPDVSVISDEFLADVEGMEHKNLAVELLKR  891
             A++E+ I Q+V Q++V++ VI++++  G+  PD+S++SD+FL DVEG+ +KN+AVELL+R
Sbjct  825   AEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNR  884

Query  892   LLRDEVKAQRRTNLVRSRQLAEMLEESLRRYQNQVISVTEVIQELISLSKDVQAAKQRGE  951
             LL+++VK+  +TN   S++++EML +S+ +Y+++ I  + VI+ELI L+KD++  +QRG+
Sbjct  885   LLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGN  944

Query  952   ELGLEPYELAFYDALSQNQSAREVMGQDKLRELAITLVVRIRKNATIDWNLKESVRARMK  1011
             ELGL++ E+AFYDAL+ +++A+E MG+  LR +A  L   ++ N  +DW+ ++S +A+M+
Sbjct  945   ELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMR  1004

Query  1012  VMVKRLLREYGYPPDMQALAIELVLEQAKVFTE  1044
             V V+RLL+ YGYPPD+Q +A+E V+EQA + ++
Sbjct  1005  VAVRRLLKKYGYPPDLQKMAVEQVVEQAELMAN  1037

41) hsdR in NC_021499


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  852 bits (3227),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 493/1055 (47%), Positives = 769/1055 (73%), Gaps = 34/1055 (3%)

Query  1     MAF-LSEAAVEQALLDQLRALDYSIEREEDIGPDGHRPERESHDEVVLKKRFEDAVARLN  59
             M F ++E  +EQ  L+ L++L+Y   + ++I+  +  PER S+ +VVL  R+E A+ ++N
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  60    PGLPLEARQDAVRRVMQSELPSLLEENRRIHKLMTEGVDVEYYADDGTLAAGKVVLIDFE  119
             +++     + A++ +     P+LLE+N  +H  + +G+++E Y D+G      V +IDFE
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  120   HPGQNDWLAVSQFVVINGQNNRRPDVVVFVNGLPLGVIELKAPGSAGAHLLGAFNQLQTY  179
              P +ND LAV+Q+ ++NG+ ++RPD+V+F+NGLP+ VIELK + +    + ++++QL+TY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KKQIPALFNTNVLLVTSDGIAARVGSLSADLERFMPWRTTDGTAVAPKGAPELSTLIEGV  239
             K +IP LF  N +LVTSDGI ++ GSL+A+ +RFM WR+ DG + ++ G + L  LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  240   FEHRRLLDVLCHFTVFGETGSG-LAKIIAGYHQFHAVRHAVNSTVTASSPEGNQRVGVIW  298
             ++   LLD++  F +F + G G ++KI+A+YHQ+ AV  AV+ ++ ASS +G+ + GVIW
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  299   HTQGSGKSLLMAFYAGQLVKHPEMANPTLVVLTDRNDLDDQLFSTFSMCRD-----LIRQ  353
             HTQGSGKSL M F++G+L++   + NPTLVV+TDRNDLD+QL+STF   ++     L+RQ
Sbjct  301   HTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   TPVQAESREDLQKVLNRASGGVIFTTLQKFGEIDE-----PLTRRRNVVVIADEAHRSQY  408
             TP QAE+R +L+ +L+  SGG++FTT+QKF   ++     +LT R+NV+V+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQY  418

Query  409   GFKAKVDAKTGEISYGFAKYMRDALPKASFIGFTGTPIEADDVNTPQVFGDYIDVYDISR  468
             GF+AK D K   I YG+AKY+RDALP+A+F+GFTGTP+ + D NT  VFG+YIDVYD+++
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  469   AVEDGATVPIYYESRLARIELDEDEKPKIDAEVDDLTEEDSEADQERFKKKWSTVEALVG  528
             AV DG+TV IYYESR+  ++L +     +D   +D+TE++ E  ++R+K KWS +EAL G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  529   SDKRLALVARDMVAHFEDRVAALDGKAMVVCMSRRICVKLYDEIVKLRPDWHSDDDNAGA  588
             +  R+  +A+D++ HFE R  A+ GK+M+V MSRRI V LYDEI++L+P+WHSDDD+ G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  589   VKIVMTGAASDPQEWQKHIGNkarrdllakrardPKDALKLVIVRDMWLTGFDAPCMHTM  648
             +K+VMTG++SDP   Q+HIG K RR+LL KR +D  D L+LVIVRDMWLTGFD P MHTM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTM  656

Query  649   YVDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALQQYSKNDQENTGVDEA  708
             Y+DKPM+GH LMQAIARVNRVF+DKP+GLIVDY+GIA++LK AL++Y+ +DQ +T++D  
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  709   QAIAVMMEKFEVVRDMYHGFDYVSALKGTPQERLAMMAGAIEWILDLQQKLAEKETTKEG  768
             +A+ +M+ K++V++DM   +DY     +   ER   ++ +++ +++L +           
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGE-----------  765

Query  769   KKNAHRRYQDavlalskafalasasDEARDIREEVGFFQAIRAALVK-----SSTGSGVT  823
               + ++R+  +V  L+KAFAL ++   A+++ +E++FF+A++A+LVK         +  T
Sbjct  766   --DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKT  823

Query  824   QQERELAIQQIVSRAVVSTEIVDILAAAGIKSPDISILSDEFLAEVQQMEKKNLALEALR  883
               E E  I+Q+VS++VV+ +++D+  + G+  PD+SILSD+FL +V+ + +KN+A+E L 
Sbjct  824   PAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLN  883

Query  884   KLINDGIRSRSKANVVQTKAFSERLEDAVARYHANAITTAEVLQELIQLAKDIRAARQRG  943
             +L+++ ++S  K+N   +K FSE L +++ +Y++ +I T+ V++ELIQLAKDI+  +QRG
Sbjct  884   RLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRG  943

Query  944   EESGLSDEEIAFYDALAENESAVQMMGDDALRLIAHELLVSLRENVSVDWAHRDSARARM  1003
             +E GL+ +EIAFYDALA +E+A + MGD  LR IAHEL  +++EN++VDW+ RDSA+A+M
Sbjct  944   NELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKM  1003

Query  1004  RVLVKRILRKYGFPPDLQDSAVQTVLQQAEALSSG  1038
             RV V+R+L+KYG+PPDLQ  AV+ V++QAE +++ 
Sbjct  1004  RVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

42) MROS_1287 in NC_018178


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  851 bits (3221),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 511/1087 (48%), Positives = 776/1087 (72%), Gaps = 65/1087 (5%)

Query  7     ESDIEQFTIELLENLGYEYVSPASISPDGDQPERQTFDDVLLINKLKNAVDRIIPTIPAE  66
             E D+EQ ++E L++LGY+Y     IS  +  PER++  DV+L ++L +A+ +I + I + 
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  67    AKEDAIKQILRISSPDLITNNETFHRMLTEGINV-TYSKDGNQRGDLVWLIDFKNPENNE  125
               E A+ ++    SP+L+ NN TFH  L +GI++  Y  +G+   ++V +IDF  P+NN+
Sbjct  67    FIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNND  126

Query  126   FtvvnqftvtstssvtgtvIKRPDVILFVNGIPLVVIELKNAVDEEATIKSAFKQIQTYK  185
             F  VNQ+T+ +         KRPD++LF+NG+P+VVIELKN+ +E   +  ++ Q++TYK
Sbjct  127   FLAVNQLTIVNGDYK-----KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  186   QTIPQLFTYNGFAVISDGLEARAGTISSDFSRFMAWKSVDGTKEASHLVSQLEILIKGML  245
               IPQLFT+N   V SDG++++AG++++++ RFM+W+S DG  E+S  ++ L++LI GML
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGML  241

Query  246   NKNTLLDLIRHFIVFEKSKKEDPDSNLTFIQTTKKLAGYHQYFAVNKAIERTLQAASGNG  305
             N +TLLDLIR F++F+   K          + +K LA+YHQY+AVNKA++R+L A+S +G
Sbjct  242   NPETLLDLIRYFVLFQDDGKG---------HISKILAAYHQYYAVNKAVDRALLASSEQG  292

Query  306   NRKGGVIWHTQGSGKSLTMVFYAGKIVLQLDNPTILVITDRNDLDDQLFDTFA-----DS  360
             + KGGVIWHTQGSGKSLTMVF++GK++  L+NPT++V+TDRNDLD+QL+ TF       +
Sbjct  293   DGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSG  352

Query  361   KQLLRQEPVQAENREHLKELLKVSSGGIVFTTIQKFQSDTSTGSVSDSKYEQLSERTNIV  420
             K LLRQ P QAE R +LK LL V SGGIVFTT+QKF+++ +  +++      L+ER N++
Sbjct  353   KGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAA-----LTERKNVI  407

Query  421   VIADEAHRTQYGFKARTIDERDENGNHIGKKTVYGFAKYLRDALPNATFIGFTGTPIEKT  480
             V+ADEAHRTQYGF+A+     D++G+ I     YG+AKYLRDALPNATF+GFTGTP+  T
Sbjct  408   VMADEAHRTQYGFNAKY----DDKGEGIK----YGYAKYLRDALPNATFVGFTGTPVAST  459

Query  481   DKNTPAVFGDYVDIYDIAQAVEDGATVRIFYEGRLAKINLSEEGKKLIKELDAELESEDI  540
             DKNT  VFG+Y+D+YD++QAV DG+TV+I+YE+R+  +NL++ +  L    +   E ++ 
Sbjct  460   DKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SLDLDEAYNDITEDQEE  518

Query  541   TSTQRAKAKWTQLEALVGSEDRFKQIAADIIYHYEERQKVFEGKAMIVAMSRRIAVKLYD  600
                QR K+KW+++EAL G+  R   +A DII H+E RQ+   GK+MIV+MSRRIAV LYD
Sbjct  519   DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYD  578

Query  601   EIIKLRPDWHNEDLKKGKIKVVMTAASSDGPELAKHHTTKDQRRVLADRMKNPDDELKIV  660
             EII+L+P+WH++D  KG IKVVMT++SSD   + +H   K +R +L  RMK+ DDEL++V
Sbjct  579   EIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLV  638

Query  661   IVRDMWLTGFDVPCLHTLYIDKPMQGHTLMQAIARVNRVYKDKPGGLIVDYLGIASDLKQ  720
             IVRDMWLTGFDVP +HT+YIDKPM+GH LMQAIARVNRV+KDKPGGLIVDY+GIA  LK+
Sbjct  639   IVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKE  698

Query  721   ALSFYSDSGGKGDPAIAQEKAVQLMLEKLEIVSRMFLEKPVKPYSKDYEELVKDPSVPYL  780
             AL  Y++S ++++ AI  +KAV+LML K +++  M+       Y+ DY  +  D      
Sbjct  699   ALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDML-------YNLDYSKFNSDKKS---  747

Query  781   GKDKGLLYEQYFTADAKTKLDIILAAEEHILSLENGKKRFIDEVTALSKAFAIAIPHEQA  840
                     E+Y+T        I L+ +E        ++RFI  VT L+KAFA+   +  A
Sbjct  748   --------ERYYTISNTMDYVIGLGEDE--------RQRFIKTVTELGKAFALCATEPTA  791

Query  841   LDVKDEVAFFQAVKARLLK-FDSSSPG---KSSEEIETTIKQVIDKALVSDRVIDIFDAA  896
              +++DE+AFF+AVKA L+K ++++  G   K++ E+E+ I+Q++ +++V++ VID++++ 
Sbjct  792   QELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTL  851

Query  897   GIKKPDISILSEEFLMEVRNMQHKNIALETLRKLLNDEIKSRIRTNLVQGKTLMEMLEKS  956
             G+ +PD+SILS++FL +V  +++KN+A+E L +LL++++KS ++TN   +K + EML +S
Sbjct  852   GLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNS  911

Query  957   IKKYHSKILTAAEVIEELIALGKEIQNLDKEPKEMGLSDFEYAFYTAIANNDSAREVMKK  1016
             I+KY+S+ + ++ VIEELI L+K+I++ ++  +E+GL+  E AFY A+A++++A+E M  
Sbjct  912   INKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGD  971

Query  1017  DKLRELAIVLYDRVRKNATIDWTLKESVKAKLKVIVKRTLRQYGYPPDMQKLATETVLKQ  1076
               LR +A  L   V+ N  +DW+ ++S KAK++V V+R L++YGYPPD+QK+A E V+ Q
Sbjct  972   KELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQ  1031

Query  1077  AELIANE  1083
             AEL+AN+
Sbjct  1032  AELMANN  1038

43) Caur_1816 in NC_010175


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  848 bits (3210),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 477/1063 (45%), Positives = 770/1063 (73%), Gaps = 51/1063 (4%)

Query  3     HLTESNIETVALDWLKSLGWQVAHGPGIAPGMSAAERQNYGEVVLEQRLRDALARLNPDL  62
             ++ E ++E VAL+WL+SLG +   G  I+    ++ER++  +VVL++RL  AL ++N+D+
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    PTEALDDAFRKLTQPEGADLLQRNRVVHLMLANGVTVE-YRHPDGGIRGTQVRVIDFDDP  121
                 ++ A++ LT   +++LL+ N   H  L NG+ +E Y + + +I    V++IDF+ P
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEI-VKIIDFEYP  122

Query  122   ANNNWLAVNQFSIEENKHNRRADVVLFVNGLPLAIIELKNAADEHATIWSAFQQLQTYQV  181
              NN+ LAVNQ++I +   ++R+D+VLF+NGLP+ +IELKN+++E   +  +++QL+TY++
Sbjct  123   QNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  182   EIPSLFVFNETLVISDGLEARIGTLGAGREWFKPWRTISGMQVEDVGVPQLEVVLKGVFE  241
              IP LF FNE LV SDG++++ G+L A  ++F  WR+  G      G++ L+V++ G+++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLN  242

Query  242   KNRFLTLIRDFIVFEDDGSGRLVKKMAGYHQFHAVLVAVKETLRASAVVSSNRMAESGGV  301
              + +L LIR F++F+DDG G++ K +A+YHQ+ AV  AV  +L AS+             
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASS-------------  289

Query  302   YEAGREPGGKPGDRRIGVVWHTQGSGKSLTMVFYAGCIIRKPAMENPTIVVLTDRNDLDD  361
                        GD + GV+WHTQGSGKSLTMVF++G +I+   ++NPT+VV+TDRNDLD+
Sbjct  290   ---------EQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDN  338

Query  362   QLFNTFSRCQD-----LLRQPPVQAESRVHLRQLLSVQSGGIVFTTIQKFLPEEKGDRHP  416
             QL++TF + ++     LLRQ P QAE+R +L+ LLSV+SGGIVFTT+QKF PE++    +
Sbjct  339   QLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMA  398

Query  417   VLSNRRNIVVITDEAHRSQYDFID-----------GFARHMRDALPQASFIGFTGTPIEK  465
              L++R+N++V++DEAHR+QY+F             G+A+ +RDALP+A+F+GFTGTP+  
Sbjct  399   ALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVAS  458

Query  466   ADADTRAVFGDYISIYDIQRAVEDGATVSIYYEARLAKLDLPDELKPKIDDefeeitege  525
             +D +T+ VFG+YI +YD+ +AV DG+TV IYYE+R+  L+LP+ L   +D+ +++ITE++
Sbjct  459   TDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQ  516

Query  526   everkeKLKTKWAQLESIVGTEQRLRLIANDIIEHFERRLEAIEGKGMVVCMSRRICVEL  585
             E + K++LK+KW+++E++ G+  R+  +A+DII+HFE R +A+ GKGM+V MSRRI V+L
Sbjct  517   EEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDL  576

Query  586   YNIICTLRPNWHHEDDDKGVIKVVMTGSASDPVDWQPHIRNKQRRELLAKRFRDPNDPLK  645
             Y+ I  L+P+WH +DDDKGVIKVVMTGS+SDP   Q HI  K+RR+LL KR +D +D L+
Sbjct  577   YDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQ  636

Query  646   LVIVRDMWLTGFDCPSLHTMYLDKPMRGHGLMQAIARVNRVFRDKPGGLVVDYLGLAHEL  705
             LVIVRDMWLTGFD PS+HTMY+DKPM+GH LMQAIARVNRVF+DKPGGL+VDY+G+A+ L
Sbjct  637   LVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESL  696

Query  706   KAALAVYTESGGTGKTTIDQEETVALMQEKYEICCGILHGFDWSDWASGDAHARIGLLPA  765
             K AL  YTES + ++T+ID + +V LM  KY++  ++L  +D S   S+    R   ++ 
Sbjct  697   KEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISN  755

Query  766   AQEHVLA-RVKGKERFVQAVRDLTKAFALAVPHEKALEIRDDVAFFQALSAALTK--RAP  822
             + + V++     ++RF+++V +L KAFAL   +  A E+ D++AFF+A+ A+L K  ++P
Sbjct  756   TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPP  815

Query  823   GDV---RTEEQLDHAIRRIIAQVIAPEGVEDIFAAAGLKKPDISILSDEFLAEVRGMPHK  879
              +    +T  +++  I ++++Q +  E+V D++ + GL +PD+SILSD+FL +V G+ +K
Sbjct  816   KEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQK  875

Query  880   NLAVEVLQKLLNGEIKRRSHKNIVQARSFAELLQQALHRYQNRAIEAAQVIEELITLAKE  939
             N+AVE+L++LL+G++K     N   ++ F+E+L +++++Y++R+IE+++VIEELI LAK+
Sbjct  876   NVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKD  935

Query  940   MREADRRGEVLGLSEEELAFYDALETNDSAVAVLGDQTLRTIARELVETVRNSISIDWAQ  999
             +++ ++RG+ LGL+ +E+AFYDAL ++++A   +GD+ LR+IA+EL  TV++++++DW++
Sbjct  936   IKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSK  995

Query  1000  REDVRANLRRLVKRILRKHGYPPDKQEKATQTVLEQAEVLSAE  1042
             R+  +A++R  V+R+L+K GYPPD Q  A + V+EQAE+++ +
Sbjct  996   RDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

44) Chy400_1964 in NC_012032


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  848 bits (3210),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 477/1063 (45%), Positives = 770/1063 (73%), Gaps = 51/1063 (4%)

Query  3     HLTESNIETVALDWLKSLGWQVAHGPGIAPGMSAAERQNYGEVVLEQRLRDALARLNPDL  62
             ++ E ++E VAL+WL+SLG +   G  I+    ++ER++  +VVL++RL  AL ++N+D+
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    PTEALDDAFRKLTQPEGADLLQRNRVVHLMLANGVTVE-YRHPDGGIRGTQVRVIDFDDP  121
                 ++ A++ LT   +++LL+ N   H  L NG+ +E Y + + +I    V++IDF+ P
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEI-VKIIDFEYP  122

Query  122   ANNNWLAVNQFSIEENKHNRRADVVLFVNGLPLAIIELKNAADEHATIWSAFQQLQTYQV  181
              NN+ LAVNQ++I +   ++R+D+VLF+NGLP+ +IELKN+++E   +  +++QL+TY++
Sbjct  123   QNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  182   EIPSLFVFNETLVISDGLEARIGTLGAGREWFKPWRTISGMQVEDVGVPQLEVVLKGVFE  241
              IP LF FNE LV SDG++++ G+L A  ++F  WR+  G      G++ L+V++ G+++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLN  242

Query  242   KNRFLTLIRDFIVFEDDGSGRLVKKMAGYHQFHAVLVAVKETLRASAVVSSNRMAESGGV  301
              + +L LIR F++F+DDG G++ K +A+YHQ+ AV  AV  +L AS+             
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASS-------------  289

Query  302   YEAGREPGGKPGDRRIGVVWHTQGSGKSLTMVFYAGCIIRKPAMENPTIVVLTDRNDLDD  361
                        GD + GV+WHTQGSGKSLTMVF++G +I+   ++NPT+VV+TDRNDLD+
Sbjct  290   ---------EQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDN  338

Query  362   QLFNTFSRCQD-----LLRQPPVQAESRVHLRQLLSVQSGGIVFTTIQKFLPEEKGDRHP  416
             QL++TF + ++     LLRQ P QAE+R +L+ LLSV+SGGIVFTT+QKF PE++    +
Sbjct  339   QLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMA  398

Query  417   VLSNRRNIVVITDEAHRSQYDFID-----------GFARHMRDALPQASFIGFTGTPIEK  465
              L++R+N++V++DEAHR+QY+F             G+A+ +RDALP+A+F+GFTGTP+  
Sbjct  399   ALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVAS  458

Query  466   ADADTRAVFGDYISIYDIQRAVEDGATVSIYYEARLAKLDLPDELKPKIDDefeeitege  525
             +D +T+ VFG+YI +YD+ +AV DG+TV IYYE+R+  L+LP+ L   +D+ +++ITE++
Sbjct  459   TDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQ  516

Query  526   everkeKLKTKWAQLESIVGTEQRLRLIANDIIEHFERRLEAIEGKGMVVCMSRRICVEL  585
             E + K++LK+KW+++E++ G+  R+  +A+DII+HFE R +A+ GKGM+V MSRRI V+L
Sbjct  517   EEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDL  576

Query  586   YNIICTLRPNWHHEDDDKGVIKVVMTGSASDPVDWQPHIRNKQRRELLAKRFRDPNDPLK  645
             Y+ I  L+P+WH +DDDKGVIKVVMTGS+SDP   Q HI  K+RR+LL KR +D +D L+
Sbjct  577   YDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQ  636

Query  646   LVIVRDMWLTGFDCPSLHTMYLDKPMRGHGLMQAIARVNRVFRDKPGGLVVDYLGLAHEL  705
             LVIVRDMWLTGFD PS+HTMY+DKPM+GH LMQAIARVNRVF+DKPGGL+VDY+G+A+ L
Sbjct  637   LVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESL  696

Query  706   KAALAVYTESGGTGKTTIDQEETVALMQEKYEICCGILHGFDWSDWASGDAHARIGLLPA  765
             K AL  YTES + ++T+ID + +V LM  KY++  ++L  +D S   S+    R   ++ 
Sbjct  697   KEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISN  755

Query  766   AQEHVLA-RVKGKERFVQAVRDLTKAFALAVPHEKALEIRDDVAFFQALSAALTK--RAP  822
             + + V++     ++RF+++V +L KAFAL   +  A E+ D++AFF+A+ A+L K  ++P
Sbjct  756   TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPP  815

Query  823   GDV---RTEEQLDHAIRRIIAQVIAPEGVEDIFAAAGLKKPDISILSDEFLAEVRGMPHK  879
              +    +T  +++  I ++++Q +  E+V D++ + GL +PD+SILSD+FL +V G+ +K
Sbjct  816   KEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQK  875

Query  880   NLAVEVLQKLLNGEIKRRSHKNIVQARSFAELLQQALHRYQNRAIEAAQVIEELITLAKE  939
             N+AVE+L++LL+G++K     N   ++ F+E+L +++++Y++R+IE+++VIEELI LAK+
Sbjct  876   NVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKD  935

Query  940   MREADRRGEVLGLSEEELAFYDALETNDSAVAVLGDQTLRTIARELVETVRNSISIDWAQ  999
             +++ ++RG+ LGL+ +E+AFYDAL ++++A   +GD+ LR+IA+EL  TV++++++DW++
Sbjct  936   IKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSK  995

Query  1000  REDVRANLRRLVKRILRKHGYPPDKQEKATQTVLEQAEVLSAE  1042
             R+  +A++R  V+R+L+K GYPPD Q  A + V+EQAE+++ +
Sbjct  996   RDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

45) Mbur_1213 in NC_007955


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  847 bits (3207),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 513/1080 (48%), Positives = 775/1080 (72%), Gaps = 59/1080 (5%)

Query  2     TESAIEEFAIELLEHQGYQYIYAPDITPDSDTPERERFEDVLLSERLRKSIGRINPTIPA  61
              E  +E+ A+E L+  GY+Y  + +I+  S TPER    DV+L ERL K++ +IN+ I +
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    DAREDAIRQIQRLNSPELIANNEAFHRMLTEGIKV-SYQKDGADRGDLVWLVDFNDPENN  120
                E A++++   +SP+L+ NN +FH  L +GI +  Y+ +G    ++V ++DF+ P+NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  121   EFLVTNQFTVIENNVNKRPDIILFVNGLPLVVIELKNPADENATVRSAFRQLQTYKQAIS  180
             +FL  NQ+T+++ + +KRPDI+LF+NGLP+VVIELKN+++E   V  +++QL+TYK  I+
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   SLFAYNGFMVISDGLEAKSGSLSAGFSRFMAWKSSDGTVEASPLIGQLETLINGMLNKTT  240
              LF++N  +V SDG+++K+GSL+A + RFM+W+S DG  E+SP ++ L+ LI+GMLN  T
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPET  245

Query  241   LLDLVRHFIVFEKSKKEDRTTGIITIQTVKKLATYHQYYAVNRAVESTLRASGYAAAKDW  300
             LLDL+R F++F+   K          +  K LA+YHQYYAVN+AV+ +L AS        
Sbjct  246   LLDLIRYFVLFQDDGKG---------HISKILAAYHQYYAVNKAVDRALLAS--------  288

Query  301   QIFGLHHESPESYGLPGVTEQPIGDRKGGVVWHTQGSGKSLSMVFYTGKIVLAMDNPTVV  360
                               +EQ  GD KGGV+WHTQGSGKSL+MVF++GK++  ++NPT+V
Sbjct  289   ------------------SEQ--GDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLV  328

Query  361   VITDRNDLDDQLFDTFA-----ASKQLLRQEPVQAENRGHLKELLNVASGGVVFTTIQKF  415
             V+TDRNDLD+QL+ TF      ++K LLRQ P QAE R +LK LL+V SGG+VFTT+QKF
Sbjct  329   VVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKF  388

Query  416   QPEEGNVY-PKLSDRRNIIVIADEAHRTQYGFKAKTIDIKDEQGNVIGQKIVYGFAKYTR  474
             +PE+ +   + L++R+N+IV+ADEAHRTQYGF+AK  D         G+ I YG+AKY R
Sbjct  389   EPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDDK--------GEGIKYGYAKYLR  440

Query  475   DALPNATYLGFTGTPIEKTDVNTPAVFGNYVDIYDISQAVEDGATVKIYYESRLAKIILS  534
             DALPNAT++GFTGTP+  TD NT  VFGNY+D+YD++QAV DG+TVKIYYESR+  + L+
Sbjct  441   DALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP  500

Query  535   KEGKKLVSELDEELEKENLAETQKAKAKWTQLEALIGSEGRIRQIAQDIVTHFEQRKEVF  594
              ++  L    ++  E ++    Q+ K+KW+++EAL G+  R+  +A+DI+ HFE R++  
Sbjct  501   -QSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAM  559

Query  595   EGKGMIVAMSRRIAADLYDEIIKIKPQWHNDDFKKGEIKIVMTSASSDGPKISKHHTTKE  654
              GKGMIV+MSRRIA DLYDEII++KP+WH+DD  KG IK+VMT++SSD   + +H   K 
Sbjct  560   KGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKK  619

Query  655   QRRALAERMKDPEDELKLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVNRVYK  714
             +R  L  RMKD +DEL+LVIVRDMWLTGFDVP +HTMYIDKPMKGH LMQAIARVNRV+K
Sbjct  620   RRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFK  679

Query  715   DKPGSLVVDYLGIASDLKEALSFYSDSGGKGDPAVLQESAVQLMLEKLEIVSQMFHGFSY  774
             DKPG+L+VDY+GIA  LKEAL  Y++S ++++ A+  + AV+LML K +++ +M+  + Y
Sbjct  680   DKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDY  738

Query  775   EHYFAADTSTKLSIILAAEEHILGL-ENGKKRYIDEVTALSRAFSIAIPHEEAMDVKDEI  833
               + +   S +   I  + + ++GL E+ ++R+I  VT L++AF++   +  A +++DEI
Sbjct  739   SKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEI  798

Query  834   SFYQAIKARLVKF----DSTGTGKTDEEIETAIRQVIDQALVTEQVIDVFDAAGIKKPDI  889
             +F++A+KA LVK+        T KT  E+E+ I Q++ Q++VTE+VIDV+++ G+ +PD+
Sbjct  799   AFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDL  858

Query  890   SILSEDFLLEVQNMEHKNIALEVLKKLLNDEIKARVKKNLVQSKSLMEMLEDSIKKYHNK  949
             SILS+DFL +V+ + +KN+A+E+L++LL++++K+ +K N   SK + EML +SI+KY+++
Sbjct  859   SILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSR  918

Query  950   VITAAevieelielskeikRMDKEPLEMGLSEFEYAFYTAIADNDSARELMQKEKLRELA  1009
              I ++ VIEELI+L+K+IK+ ++   E+GL+  E AFY A+A +++A+E M    LR +A
Sbjct  919   SIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIA  978

Query  1010  VVLFDKIKQNASIDWTIKESVRAKLKVIVKRTLRQYGYPPDLQALATETVLKQAELITDE  1069
               L   +K+N ++DW+ ++S +AK++V V+R L++YGYPPDLQ +A E V+ QAEL++++
Sbjct  979   HELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

46) MmarC6_0040 in NC_009975


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  847 bits (3206),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 491/1040 (48%), Positives = 781/1040 (76%), Gaps = 25/1040 (2%)

Query  6     EDTIEQGTLELLESIGYEIISGPEIAPDGTSPERKDYSEVVLVSRLRNAISRINPNVPEV  65
             ED +EQ +LE L+S+GY+   G EI+  + +PERK   +VVL  RL +A+ +IN+++   
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  66    AREDALRKVLRLE-NPNLLMNNEKFHEFIFKGIDVE-YPIDGRVKGDKVYLLDKD-PLKN  122
               E AL+  L LE +PNLL NN  FHE +++GI++E Y  +G+   + V ++D + P +N
Sbjct  67    FIEKALHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  123   EFVAVNQFTIIQNNKNRRPDIVIFVNGLPLSVIELKNPTKEDATIWSAYNQIQTYKSEIS  182
             +F+AVNQ+TI++ + ++RPDIV+F+NGLP+ VIELKN+T+E   +  +Y+Q++TYK  I+
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  183   ELFKYNELILISDGTESRIGTLSSNKEWFLPWKSIDGTSEINNGVSQLKISILGMFDKTR  242
             +LF +NE+++ SDG +++ G+L++N ++F+ W+S DG +E + G++ L + I GM++   
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPET  245

Query  243   FIDIIKNFIVFKKDGK-DIIKVIAGYHQYFAANRAIEKTIEAIS--GNRRCGVVWHTQGS  299
             ++D+I+ F++F+ DGK +I K++A+YHQY+A N+A+++++ A S  G+ + GV+WHTQGS
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGS  305

Query  300   GKSLTMAFYAGKLAITPELRNPTIVVVTDRNDLDDQLFGTFASCID-----VLKQTPVQA  354
             GKSLTM F++GKL     L NPT+VVVTDRNDLD+QL++TF    +     +L+QTP QA
Sbjct  306   GKSLTMVFFSGKL--IQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  355   KNAEDLKEQLKVVSGGVIFTTMQKFSVDELNAKYPMLSDRENIIVMADEAHRSQYGLKAR  414
                 +LK  L V SGG++FTTMQKF  ++ ++  + L++R N+IVMADEAHR+QYG++A+
Sbjct  364   ETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAK  423

Query  415   SVEKNGEVGITYGFAKYLRDALPNASFIGFTGTPIDFEDKSTRSIFGEYIDIYDVRRAVA  474
               +K    GI YG+AKYLRDALPNA+F+GFTGTP+   DK+T+ +FG+YID+YD+ +AVA
Sbjct  424   YDDKGE--GIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  475   DGRTVKIYYESRVAKIGIENDVLAKLDAefeevtefeeNYKKEKLKGKWAQLEAIVGSND  534
             DG TVKIYYESRV  + + + +   LD  ++++TE +E+  K++LK+KW+++EA+ G++ 
Sbjct  482   DGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  535   RISKVAQDIVNHFEKREETLSGKAIVVCMSRRICVDLYDEIIRLRPEWHNDDDKLGVLKV  594
             R+  +A+DI++HFE R++++ GK+++V MSRRI VDLYDEIIRL+PEWH+DDD  GV+KV
Sbjct  540   RVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  595   IMTGSAADGTEWQKHIRSKGKRKELAEHFKNPESEFKIAIVRDMWLTGFDVPCLHTLYID  654
             +MTGS++D T  Q+HI +K +R+ L  + K+ + E+++ IVRDMWLTGFDVP +HT+YID
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  655   KPMKGHGLMQAIARVNRVFRDKPGGLVVDYIGIAQDLKYALMNYTSSGGTGKPTYDIEDA  714
             KPMKGH LMQAIARVNRVF+DKPGGL+VDY+GIA+ LK AL +YT S + ++ + D + A
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKA  718

Query  715   VNLMKSKYEAMKDFFYGHDYSKFFNGTNIEKMDVIPETLEFILN-QPDGKKRFVKLALEL  773
             V+LM  KY+ ++D +Y  DYSKF ++ + E+   I++T+++++    D ++RF+K   EL
Sbjct  719   VELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTEL  778

Query  774   IKSYALSLPHEEAVKIREEVAFFTGVKAALYK-----NTEISGKPEDELNSAIKQIVSGA  828
              K++AL   +  A  + +E+AFF +VKA+L K     +   + K   E+++ I+Q+VS +
Sbjct  779   GKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQS  838

Query  829   VRTDGIIDVFGEAGLEKPDISILSEQFLEDVKNMKYKNLALETLKKILNDEIRAKFKNNL  888
             V T+++IDV+   GLE+PD+SILS++FL DV  +K KN+A+E L+++L++++++  K N 
Sbjct  839   VVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNA  898

Query  889   LQEKKFSEMIENAIKRYHNKAIDSAAVIQELIAIAKEIENAKRRGEELHLTEEELAFYDA  948
                K+FSEM+ N+I++Y++++I+++ VI+ELI +AK+I + ++RG+EL L  +E+AFYDA
Sbjct  899   TVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDA  958

Query  949   LSDNDSAKEILGTEILTEIARELTETLRNSVSIDWEVRETVRATLRVKIKRLLRKYGYPP  1008
             L+ +++AKE +G   L  IA+ELT T+++++++DW  R++ +A +RV ++RLL+KYGYPP
Sbjct  959   LASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPP  1018

Query  1009  DKQQIAADLVLKQAETISKE  1028
             D Q++A + V+ QAE ++++
Sbjct  1019  DLQKMAVEQVVEQAELMANN  1038

47) MmarC7_0017 in NC_009637


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  846 bits (3203),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 491/1040 (48%), Positives = 779/1040 (75%), Gaps = 25/1040 (2%)

Query  6     EDTIEQGTLELLESIGYEIISGPEIAPDGTSPERKDYSEVVLVSRLRNAISRINPKVPEV  65
             ED +EQ +LE L+S+GY+   G EI+  + +PERK   +VVL  RL +A+ +IN+ +   
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  66    AREDALRKVLRLE-NPNLLMNNEKFHEFIFKGIDVE-YPIDGRVKGDKVYLLD-KNPLKN  122
               E AL+  L LE +PNLL NN  FHE +++GI++E Y  +G+   + V ++D   P +N
Sbjct  67    FIEKALHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  123   EFVAVNQFTIIQNNKNRRPDIVIFVNGLPLSVIELKNPTKEDATIWSAYNQIQTYKSEIS  182
             +F+AVNQ+TI++ + ++RPDIV+F+NGLP+ VIELKN+T+E   +  +Y+Q++TYK  I+
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  183   ELFKYNELILISDGTESRIGTLSSNKEWFLPWKSIDGTSEINNGVSQLKISILGMFDKTR  242
             +LF +NE+++ SDG +++ G+L++N ++F+ W+S DG +E + G++ L + I GM++   
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPET  245

Query  243   FIDIIKNFIVFKKDGK-DIIKVIAGYHQYFAANRAIEKTIEAVS--GNRRCGVVWHTQGS  299
             ++D+I+ F++F+ DGK +I K++A+YHQY+A N+A+++++ A S  G+ + GV+WHTQGS
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGS  305

Query  300   GKSLTMAFYAGKLAITPELKNPTIVVVTDRNDLDDQLFGTFASCID-----VLKQTPVQA  354
             GKSLTM F++GKL     L+NPT+VVVTDRNDLD+QL++TF    +     +L+QTP QA
Sbjct  306   GKSLTMVFFSGKL--IQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  355   KNAEDLKEQLKVVSGGVIFTTMQKFSVDELNAKYPMLSDRENIIVMADEAHRSQYGLKAR  414
                 +LK  L V SGG++FTTMQKF  ++ ++  + L++R N+IVMADEAHR+QYG++A+
Sbjct  364   ETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAK  423

Query  415   SVEKNGEVGITYGFAKYLRDALPNASFIGFTGTPIDFEDKSTRSIFGEYIDIYDVRRAVA  474
               +K    GI YG+AKYLRDALPNA+F+GFTGTP+   DK+T+ +FG+YID+YD+ +AVA
Sbjct  424   YDDKGE--GIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  475   DGRTVKIYYESRVAKIGIENDVLAKLDAefeevtefeeNYKKEKLKGKWAQLEAIVGSND  534
             DG TVKIYYESRV  + + + +   LD  ++++TE +E+  K++LK+KW+++EA+ G++ 
Sbjct  482   DGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  535   RISNVAQDIVNHFEKREETLSGKAIVVCMSRRICVDLYDEIIRLRPEWHNDDDKLGVLKV  594
             R+  +A+DI++HFE R++++ GK+++V MSRRI VDLYDEIIRL+PEWH+DDD  GV+KV
Sbjct  540   RVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  595   IMTGSAADGTEWQKHIRTKGKRKELADHFKDSESEFKIAIVRDMWLTGFDVPCLHTLYID  654
             +MTGS++D T  Q+HI  K +R+ L  + KD + E+++ IVRDMWLTGFDVP +HT+YID
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  655   KPMKGHGLMQAIARVNRVFRDKPGGLVVDYIGIAQDLKYALMNYTSSGGTGKPTYDIEDA  714
             KPMKGH LMQAIARVNRVF+DKPGGL+VDY+GIA+ LK AL +YT S + ++ + D + A
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKA  718

Query  715   VNLMKSKYEAMKDFFYGHDYSKFFNGTNIEKMDVIPETLEFILN-QPDGKKRFVKLALEL  773
             V+LM  KY+ ++D +Y  DYSKF ++ + E+   I++T+++++    D ++RF+K   EL
Sbjct  719   VELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTEL  778

Query  774   IKSYALSLPHEEAVKIREEVAFFTGVKAALYK-----NTEISGKPEDELNSAIKQIVSGA  828
              K++AL   +  A  + +E+AFF +VKA+L K     +   + K   E+++ I+Q+VS +
Sbjct  779   GKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQS  838

Query  829   VRTDGIIDVFGEAGLEKPDISILSEQFLEDVKNMKYKNLALETLKKILNDEIRAKFKNNL  888
             V T+++IDV+   GLE+PD+SILS++FL DV  +K KN+A+E L+++L++++++  K N 
Sbjct  839   VVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNA  898

Query  889   LQEKKFSEMIENAIKRYHNKAIDSAAVIQELIAIAKEIENAKRRGEELHLTEEELAFYDA  948
                K+FSEM+ N+I++Y++++I+++ VI+ELI +AK+I + ++RG+EL L  +E+AFYDA
Sbjct  899   TVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDA  958

Query  949   LSDNDSAQEILGTEILTEIARELTETLRNSVSIDWEVRETVRATLRVKIKRLLRKYGYPP  1008
             L+ +++A+E +G   L  IA+ELT T+++++++DW  R++ +A +RV ++RLL+KYGYPP
Sbjct  959   LASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPP  1018

Query  1009  DKQQIAADLVLKQAETISKE  1028
             D Q++A + V+ QAE ++++
Sbjct  1019  DLQKMAVEQVVEQAELMANN  1038

48) Mmol_0222 in NC_012968


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  845 bits (3200),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 514/1079 (48%), Positives = 784/1079 (73%), Gaps = 56/1079 (5%)

Query  3     KITESDIETLAIERLQALGFSYVYAPDIAPDSTTPERESFAEVLLLSRLRNAITRINPTL  62
             ++ E D+E +A+E+LQ+LG+ Y  + +I+  S TPER S  +V+L  RL +A+ +IN+ +
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    PATALDEAIKTIQRISSPELLANNETFHRLLREGVNV-SYQKDGLQRGDLVWLIDFINPQ  121
              +  ++ A+  +    SP+LL NN TFH  L +G+++  Y+ +G    ++V +IDF  PQ
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  122   NNDFVVANQFKIIENNQNKRPDVILFVNGIPLVVIELKNAADENATIKTAYQQLNTYKET  181
             NNDF+  NQ+ I++ + +KRPD++LF+NG+P+VVIELKN+++E   +  +Y+QL+TYK  
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  182   IPSLFTYNGFVIVSDGLEAKAGSISAGFSRFMAWKTADGKSEASKLTGQLETLINGMLNK  241
             IP LFT+N  ++ SDG+++KAGS++A + RFM+W++ DG++E+S   + L+ LI+GMLN 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  242   STLLDLIRHFIVFEKSSKEGPKQADGTPGLISISTVKKLAAYHQYYAVNAAVISTLRATA  301
              TLLDLIR F++F+  +K          G IS    K LAAYHQYYAVN AV  +L A++
Sbjct  244   ETLLDLIRYFVLFQDDGK----------GHIS----KILAAYHQYYAVNKAVDRALLASS  289

Query  302   EAVSLAQTPASYGLSDVRNQPNGDRKAGVVWHTQGSGKSLSMVFYTGKIVLALNNPTILV  361
             E                    +GD K+GV+WHTQGSGKSL+MVF++GK++  LNNPT++V
Sbjct  290   E--------------------QGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVV  329

Query  362   ITDRNDLDDQLFDTFA-----SSSQLLRQEPKQVEDRQQLKELLKVASGGVIFTTIQKFQ  416
             +TDRNDLD+QL+ TF      S+  LLRQ PKQ E R++LK LL V SGG++FTT+QKF+
Sbjct  330   VTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFE  389

Query  417   PEEGNVY-ETLSDRRNIVVIADEAHRTQYGFKAKTVDDKNKAGDVIGQKIVYGFAKYMRD  475
             PE+ +    +L++R+N++V+ADEAHRTQYGF+AK  DDK       G+ I YG+AKY+RD
Sbjct  390   PEQNETTMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRD  441

Query  476   ALPNATYLGFTGTPIESTDVNTPAVFGNYVDIYDIAQAVEDGATVRIYYESRLAKVQLSD  535
             ALPNAT++GFTGTP+ STD NT  VFGNY+D+YD++QAV DG+TV+IYYESR+  ++L+ 
Sbjct  442   ALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP-  500

Query  536   EGKKLVAeldeeleqdeltetqKAKAKWTQIEALIGSENRIKNVAQDIVAHFEQRQEVFD  595
             ++  L    ++  E++E    Q+ K+KW++IEAL G+  R+  +A+DI+ HFE RQ+   
Sbjct  501   QSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMK  560

Query  596   GKGMIVSMSRRIAAELYDAIIKLKPEWHSNEPHKGVIKVVMTAASADGPMLAKHHTTKLQ  655
             GKGMIV+MSRRIA +LYD II+LKPEWHS++ +KGVIKVVMT++S+D   + +H   K +
Sbjct  561   GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKR  620

Query  656   RKALAERMKDPDDELKLVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAIARVNRVYKD  715
             R+ L  RMKD DDEL+LVIVRDMWLTGFD PSMHT+YIDKPMKGHNLMQAIARVNRV+KD
Sbjct  621   RNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKD  680

Query  716   KPGGLIVDYLGIASDLKEALSFYSDAGGKGNPAETQEQAVALMLEKLEIVSDMYHGFPYE  775
             KPGGLIVDY+GIA  LKEAL  Y++++    + +T ++AV LML K +++ DM   + Y 
Sbjct  681   KPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYS  739

Query  776   DYFEADTSKKLSLILAAEEHILGI-DDGKRRYVNEVTALSQAFAIAIPHDQAMDVKDEVA  834
              +     S +   I  + + ++G+ +D ++R+++ VT L++AFA+   +  A +++DE+A
Sbjct  740   KFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIA  799

Query  835   FFQAVKARLAK-FDSTGNG---RTDEEIETTIRQVIDQALVSEQVIDVFDAAGIKKPDis  890
             FF+AVKA L K +++  +G   +T  E+E+ I Q++ Q++V+E+VIDV+++ G+ +PD+S
Sbjct  800   FFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLS  859

Query  891   ilseefllelKNHEHKNVALEVLKKLLNDELKVRAKKNLVQSKSLMEMLENAIKKYHNKI  950
             ILS++FL ++    +KNVA+E+L++LL++++K   K N   SK + EML N+I+KY+++ 
Sbjct  860   ILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRS  919

Query  951   LTAAEVMDELIKISKEIVASDNEAKGLGLSEFEYAFYSAVASNNSAKELMQHEQLRELAV  1010
             + ++ V++ELI+++K+I   ++ ++ LGL+  E AFY A+AS+++AKE M + +LR +A 
Sbjct  920   IETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAH  979

Query  1011  VLTQRVRENASIDWTIKENVKAKLKVIIKRTLRQFGYPPDMQLLATETIMKQAEMIATE  1069
              LT+ V+EN ++DW+ +++ KAK++V ++R L+++GYPPD+Q +A E ++ QAE++A +
Sbjct  980   ELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

49) G432_08520 in NC_020561


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  845 bits (3200),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 497/1075 (47%), Positives = 768/1075 (72%), Gaps = 54/1075 (5%)

Query  1     MAF-LSEAQVEQTLLEQLRGLGYVVASDEVISPDGSAPERESHDVVLLHQRLADAVLRLN  59
             M F ++E ++EQ  LE L++LGY    ++ IS  + +PER S+  V+LH+RL  A+ ++N
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  60    PHLPLEARADAIRKLTQSVFPGLLEENRRIHTLLTEGVDVEYYGDDGVLTAGKVALLDFD  119
             +++       A++ LT    P LLE+N  +H  L +G+++E Y+D+G      V ++DF+
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  120   SPAHNDWLAVQQFVVIHGQVKRRPDVVLFVNGLPLAVIELKAPGSAGAHLAGAFNQLQTY  179
              P +ND LAV+Q+ +++G+ K+RPD+VLF+NGLP+ VIELK + +    + ++++QL+TY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KQQIPALFHTNALLVTSDGIAARVGSLSADLERFMPWRTTDGRAILEKGSPELPTLIEGV  239
             K +IP LF  N +LVTSDGI ++ GSL+A+ +RFM WR+ DG++    G + L  LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  240   FEKQRFLDLLRHFTVFGETGSG-LAKIVAGYHQYHAVNRAIESTIRASDSWHGVAEEPAS  298
             ++ + +LDL+R F +F + G G ++KI+A+YHQY AVN+A++ ++               
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRAL---------------  285

Query  299   YGLPSVATQSLGDRRAGVIWHTQGSGKSLLMAFYAGRLVKHPAMENPTLVVLTDRNDLDD  358
                  +A+   GD ++GVIWHTQGSGKSL M F++G+L+    ++NPTLVV+TDRNDLD+
Sbjct  286   -----LASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDN  338

Query  359   QLFATFSMCRD-----LIRQTPVQAESREHLQQLLARASGGVIFTTLQKFG-----EVNA  408
             QL++TF   ++     L+RQTP QAE+R +L+ LL+  SGG++FTT+QKF         A
Sbjct  339   QLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMA  398

Query  409   PLTTRRNVVVIADEAHRSQYGFRAKVDAKTGEVSYGFAKYLRDALPNASFIGFTGTPIEA  468
             +LT R+NV+V+ADEAHR+QYGF AK D K   + YG+AKYLRDALPNA+F+GFTGTP+ +
Sbjct  399   ALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVAS  458

Query  469   TDVNTPAVFGNYIDIYDISRAVEDGATVPIYYESRLARIELDEDEKPKLDAEVEALTEDE  528
             TD NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L +     LD   + +TED+
Sbjct  459   TDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQ  516

Query  529   AVTEQEKLKAKWATVEQLVGSEKRVALVAKDLVAHFEDRLSALDGKAMVVCMSRRICVAL  588
                 +++LK+KW+ +E L G+  RV  +AKD++ HFE R  A+ GK+M+V MSRRI V L
Sbjct  517   EEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDL  576

Query  589   YDEIVKLRPDWHSTDDNAGAIKIVMTGAASDPPEWQQHIGNkarrdllakrardakdPLK  648
             YDEI++L+P+WHS DD+ G IK+VMTG++SDP   Q+HIG K RR+LL KR +D  D L+
Sbjct  577   YDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQ  636

Query  649   LVIVRDMWLTGFDAPCMHTMYVDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQSL  708
             LVIVRDMWLTGFD P MHTMY+DKPM+GH LMQAIARVNRVF+DKP+GLIVDY+GIA+SL
Sbjct  637   LVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESL  696

Query  709   KSALAQYSARDQEATGVDEAQAVAVLLEKYEVVRDMYHGFDYVTALNGTPQQRLAMMAGA  768
             K AL +Y+  DQ  T++D  +AV ++L KY+V++DM   +DY    ++   +R   ++ +
Sbjct  697   KEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNT  756

Query  769   IEWILDRQQQWTAAETTEEGKKNAQRRYQDSVlalskayslasasDEARGIREEVGFFQA  828
             ++ +++  +             + ++R+  +V  L+KA++L ++   A+ + +E++FF+A
Sbjct  757   MDYVIGLGE-------------DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKA  803

Query  829   IRAALVK-----SSTGSGVTSQERDFAIQQIVSRAVVSTEIVDILKAAGIQSPDISILSD  883
             ++A+LVK         +  T+ E +  I+Q+VS++VV+ +++D+ ++ G++ PD+SILSD
Sbjct  804   VKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSD  863

Query  884   EFLAEVQQMQKKNLALEALRKLINDGIRSRSKANIVETRTFSERLEQAVARYHANAITTA  943
             +FL +V+ +++KN+A+E L +L+++ ++S  K+N   ++ FSE L +++ +Y++ +I T+
Sbjct  864   DFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETS  923

Query  944   EVLQQLIQLAKDIRAARQRGEESGLSDEEIAFYDALAENESAVQIIGDDNLKVIAHELLV  1003
              V+++LIQLAKDI+  +QRG+E GL+ +EIAFYDALA +E+A + +GD +L+ IAHEL  
Sbjct  924   KVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTK  983

Query  1004  SLKSNVSVDWAHRDSARARMRVLVKRILRKYGYPPDLQDAAVQTVLQQAEALSAG  1058
             ++K N++VDW+ RDSA+A+MRV V+R+L+KYGYPPDLQ  AV+ V++QAE ++  
Sbjct  984   TVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

50) GYY_04440 in NC_015847


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  842 bits (3190),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 493/1040 (48%), Positives = 776/1040 (75%), Gaps = 25/1040 (2%)

Query  6     EDTVEQGTLELLKSIGYEIISGPEIAPDGTSPERKDYSEVVLVSRLRDAISRINPKVPVE  65
             ED +EQ +LE L+S+GY+   G EI+  + +PERK   +VVL  RL  A+ +IN+ +   
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  66    AREDALRKVLRLE-NPNLLMNNEKFHEFIFKGIDVE-YPIDGRVKGDKVYLLDKD-PLKN  122
               E AL+  L LE +PNLL NN  FHE +++GI++E Y  +G+   + V ++D + P +N
Sbjct  67    FIEKALHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  123   EFVAVNQFTIIQNNKNRRPDIVIFVNGLPLSVIELKNPTKEDATIWSAYNQIQTYKSEIS  182
             +F+AVNQ+TI++ + ++RPDIV+F+NGLP+ VIELKN+T+E   +  +Y+Q++TYK  I+
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  183   ELFKYNELILISDGTESRIGTLSSNKEWFLPWKSIDGTSEINNGVSQLKISILGMFDKTR  242
             +LF +NE+++ SDG +++ G+L++N ++F+ W+S DG +E + G++ L + I GM++   
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPET  245

Query  243   FIDIIKNFIVFKKDGK-DIIKVIAGYHQYFAANRAIEKTIEAVS--GNRRCGVVWHTQGS  299
             ++D+I+ F++F+ DGK +I K++A+YHQY+A N+A+++++ A S  G+ + GV+WHTQGS
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGS  305

Query  300   GKSLTMAFYAGKLAITPELRNPTIVVVTDRNDLDDQLFGTFASCID-----VLKQTPVQA  354
             GKSLTM F++GKL     L NPT+VVVTDRNDLD+QL++TF    +     +L+QTP QA
Sbjct  306   GKSLTMVFFSGKL--IQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  355   KNAEDLKEQLKVVSGGVIFTTMQKFSVDELNAKYPMLSDRENIIVMADEAHRSQYGLKAK  414
                 +LK  L V SGG++FTTMQKF  ++ ++  + L++R N+IVMADEAHR+QYG++AK
Sbjct  364   ETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAK  423

Query  415   SVARNGEVGITYGFAKYLRDALPNASFIGFTGTPIDFEDKSTRSIFGEYIDIYDVRRAVA  474
                +    GI YG+AKYLRDALPNA+F+GFTGTP+   DK+T+ +FG+YID+YD+ +AVA
Sbjct  424   YDDKGE--GIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  475   DGRTVKIYYESRVAKIGIENDVLAKLDAefeevtefeeNYKKEKLKGKWAQLEAIVGSND  534
             DG TVKIYYESRV  + + + +   LD  ++++TE +E+  K++LK+KW+++EA+ G++ 
Sbjct  482   DGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  535   RISKVAQDIVNHFEKREETLTGKAIVVCMSRRICVDLYDEIIRLRPEWHNDDDKLGVLKV  594
             R+  +A+DI++HFE R++++ GK+++V MSRRI VDLYDEIIRL+PEWH+DDD  GV+KV
Sbjct  540   RVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  595   IMTGSAADGTEWQKHIRTKGKRKELAEHFKDSESEFKIAIVRDMWLTGFDVPCLHTLYID  654
             +MTGS++D T  Q+HI  K +R+ L  + KD + E+++ IVRDMWLTGFDVP +HT+YID
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  655   KPMKGHGLMQAIARVNRVFRDKPGGLVVDYIGIAQDLKYALVNYTSNGGTGKPTYDIEDA  714
             KPMKGH LMQAIARVNRVF+DKPGGL+VDY+GIA+ LK AL +YT +++ ++ + D + A
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT-ESDQAQTAIDTDKA  718

Query  715   VNLMKSKYEAMKDFFYGHDYSKFFNGTNIEKMDVIPETLEFILN-QPDGKKRFVKLALEL  773
             V+LM  KY+ ++D +Y  DYSKF ++ + E+   I++T+++++    D ++RF+K   EL
Sbjct  719   VELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTEL  778

Query  774   IKSYALSLPHEEAIKIREEVAFFTGVKAALYK-----NTEISGKPEDELNSAIKQIVSGA  828
              K++AL   +  A  + +E+AFF +VKA+L K     +   + K   E+++ I+Q+VS +
Sbjct  779   GKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQS  838

Query  829   VRTDGIIDVFGEAGLEKPDISILSEQFLEDVKNMKYKNLALETLKKILNDEIRAKFKNNL  888
             V T+++IDV+   GLE+PD+SILS++FL DV  +K KN+A+E L+++L++++++  K N 
Sbjct  839   VVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNA  898

Query  889   LQEKKFSEMIENAIKRYHNKAIDSAAVIQELIAIAKEIENAKRRGEELHLTEEELAFYDA  948
                K+FSEM+ N+I++Y++++I+++ VI+ELI +AK+I + ++RG+EL L  +E+AFYDA
Sbjct  899   TVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDA  958

Query  949   LSDNDSAKEILGTEVLSEIARELTDTLRKNISIDWEVRETVRATLRVRVKRLLKKYGYPP  1008
             L+ +++AKE +G   L  IA+ELT T++ N+++DW  R++ +A +RV V+RLLKKYGYPP
Sbjct  959   LASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPP  1018

Query  1009  DKAQIAADLVLKQAETISKE  1028
             D  ++A + V+ QAE ++++
Sbjct  1019  DLQKMAVEQVVEQAELMANN  1038

51) Metme_1967 in NC_015572


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  842 bits (3187),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/1061 (48%), Positives = 774/1061 (73%), Gaps = 48/1061 (4%)

Query  2     TEDQLEQEALGWLAEVGYSTLYGPDLAPDGDNPERDNYLQVVLVERLRSAIARLNPSIPL  61
              ED+LEQ AL WL  +GY    G +++  +  PER +  +VVL ERL  A+ ++N+ I  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDALQQILNLE-VPGLLAANRHFHRLLVNGVPVE-YQKDGDTRGDRVRLIEFAEPSS  119
                E AL++ L LE  P LL  N  FH  L+NG+ +E Y+ +G++  + V++I+F  P +
Sbjct  66    RFIEKALHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  120   NEWLAINQFAIKGPKHSRRPDIILFINGLPLVLLELKNPADENADIWKAFGQIQTYKEQI  179
             N+ LA+NQ++I      +RPDI+LFINGLP+V++ELKN+++E  ++  ++ Q++TYK +I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   PDVFQYNEVLVVSDGSEARLGSLSSDAERFMQWRTIDGITLDPLGQFNELETLIHGLLNP  239
             P++F +NEVLV SDG +++ GSL+++ +RFM WR+ DG T ++   +  L+ LIHG+LNP
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQT-ESSPGLASLDVLIHGMLNP  243

Query  240   ATLLDYLRFFVLFEDDG-GLVKKV-AGYHQYHAVRAAIQQVVTASRPDGNHKGGVVWHTQ  297
              TLLD +R+FVLF+DDG G + K+ A+YHQY AV  A+++ + AS  +G+ KGGV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  298   GSGKSITMTCFAARVMQETAMENPTIVVITDRNDLDGQLFGVF-----SLGQDLLREQPV  352
             GSGKS+TM  F+++++Q   ++NPT+VV+TDRNDLD QL++ F       G++LLR+ P 
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  353   QAETRQDLRAKLDNRPSGGIVFATIQKFMPGADEDSFPVLSDRSNIVVIADEAHRTQYGF  412
             QAETR++L++ L    SGGIVF+T+QKF P  +E + + L++R N++V+ADEAHRTQYGF
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  413   EAKLKTVKTQQTAANEGRVDMAAEYRGMYQVGYAQHLRDALPNATFVAFTGTPVSLEDRD  472
             +AK            +++ + +  Y      GYA+ LRDALPNATFV+FTGTPV+  D++
Sbjct  421   NAKY-----------DDKGE-GIKY------GYAKYLRDALPNATFVGFTGTPVASTDKN  462

Query  473   TRAVFGEYIHVYDMQQAKEDGATVAIYFESRLAKLALKPEQLPQIddevdelaedeeedQ  532
             T+ VFG+YI+VYDM QA  DG+TV IY+ESR+  L L P+ L ++D+  ++++ED+EED 
Sbjct  463   TQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNL-PQSL-DLDEAYNDITEDQEEDV  520

Query  533   QAKLKSRWAALEKVVGAEPRIASVAADLVAHFEERNKAQDGKAMVVAMSREICVHLYNEI  592
             + +LKS+W+ +E + GA PR+ ++A D++ HFE R++A  GK+M+V+MSR I V+LY+EI
Sbjct  521   KQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEI  580

Query  593   IKLRPDWHSDDPEQGAIKIVMTGSASDKALLRPHIYSKQQKKRLEKRFKDPADPLRLVIV  652
             I+L+P+WHSDD ++G IK+VMTGS+SD + ++ HI +K++++ LEKR KD  D L+LVIV
Sbjct  581   IRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIV  640

Query  653   RDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKSAL  712
             RDMWLTGFD P +HT+Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GIA+ LK AL
Sbjct  641   RDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEAL  700

Query  713   KDYTASQGRGRPTVDAAEAYAVLEEKLDILRGILHGYDYSDFLTTGHKR------LAGAA  766
             K+YT S+ +++ ++D+  A  ++  K D+++++L   DYS F   ++K+      ++ + 
Sbjct  701   KEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKF--NSDKKSERYYTISNTM  757

Query  767   NHVLG-QKDGKKRFADTSLAMSKAFTLCCTLDEAKAVREEMAFFQAVKVILTK----PDI  821
             + V+G   D ++RF  T   ++KAF+LC T   A+ + +E+AFF+AVK  L K    P  
Sbjct  758   DYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKE  817

Query  822   SRKKRSDEERDLAIRQIINSAVVSEDVVDIFEAVGLDKPNIGILDEAFLADVRNLPERNL  881
             ++ +++  E +  I Q+++ +VV+EDV+D+++++GL++P+++IL + FL DV  L ++N+
Sbjct  818   GKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNV  877

Query  882   AVELLERLLEGEIKSRFAGNVVQEKKFSELLTNVIKRYQNRAIETAQVIEELIQMAKKFR  941
             AVELL+RLL G++KS    N    K+FSE+L N I++Y++R+IET++VIEELIQ+AK ++
Sbjct  878   AVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIK  937

Query  942   EAAGRGESLGLSEDEIRFYDALADNESAVRELSDDTLKLIAHELTENLRQNITVDWSQRE  1001
             +   RG+ LGL+ DEI FYDALA +E+A   ++D  L+ IAHELT  +++N+ VDWS+R+
Sbjct  938   QEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRD  997

Query  1002  SVRAKLRLMVKRILRKYKYPPDQQEAAIELVLQQAQALGDA  1042
             S +AK+R+ V+R+L+KY YPPD Q  A+E V++QA+ +++ 
Sbjct  998   SAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

52) Xfasm12_2283 in NC_010513


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  842 bits (3188),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/1050 (47%), Positives = 763/1050 (73%), Gaps = 34/1050 (3%)

Query  1     MAF-LSEATLEQAVLDQLRLLGYSIEREENIGPDGYRPERASYDQVVLKQRFVDAVTRLN  59
             M F ++E  LEQ  L+ L+ LGY   + ++I+  +  PER S  +VVL +R+  A+ ++N
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  60    PGLPPEARQDAIRKVTQSELPSLLEENRRIHRLITEGVDVEYYAQDGTLTAGNVALIDFD  119
             +++ P   + A++ +T    P+LLE+N  +H  + +G+++E Y ++G      V +IDF+
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  120   HPQQNDWLAVNQFVVIADHYNRRPDVVLFLNGLPLAVIELKAPGSINATLIAAFNQLQTY  179
              PQ+ND LAVNQ+ ++ ++Y++RPD+VLF+NGLP+ VIELK + +    +  +++QL+TY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KEQIPALFNTNALLVTSDGMTARFGSLSADLERFMPWRTTDGTDIAPKGVPELATLIEGI  239
             K +IP LF  N +LVTSDG+ ++ GSL+A+ +RFM WR+ DG   ++ G++ L  LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  240   FEPHRLLDLLRHFTVFRKTDAG-LAKIIAGYHQFHAVRQAINSTVAASSPQGNQQIGVIW  298
             ++P+ LLDL+R F +F+  + G ++KI+A+YHQ+ AV +A++ ++ ASS QG+ + GVIW
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  299   HTQGSGKSLLMAFYAGQLVKHPAMANPTLVVLTDRNDLDDQLFTTFSQCGD-----LIRQ  353
             HTQGSGKSL M F++G+L+    + NPTLVV+TDRNDLD+QL++TF +  +     L+RQ
Sbjct  301   HTQGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   TPVQAQSRDQVRKLLNRASGGVIFTTLQKFG-----DITEPLTTRRNVVVIADEAHRSQY  408
             TP QA++R +++ LL+  SGG++FTT+QKF          +LT R+NV+V+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQY  418

Query  409   GFKAKVDNKTGKISYGFAKYMRDALPNASCIGFTGTPIEADDVNTPAVFGNYIDIYDISR  468
             GF+AK D+K   I YG+AKY+RDALPNA+ +GFTGTP+ + D NT  VFGNYID+YD+++
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  469   AVEDGATVPIYYESRLARIALDEAEKPQIDAEVNALTEADSEAEQERFKKKWSTVETLVG  528
             AV DG+TV IYYESR+  I+L+ ++  ++D   N +TE + E  ++R+K KWS +E+L G
Sbjct  479   AVADGSTVKIYYESRV--IPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  529   SDKRLALIAKDIITHCEDRLAALDGKAMVVCMSRRICVALYDHIVTLRPDWHSTDNKAGS  588
             +  R+  +AKDII H E R  A+ GK+M+V MSRRI V LYD+I+ L+P+WHS D+  G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  589   LKIVMTGTASDPQQWRQHIGNKarrdllaerardPKDPLKLVIVRDMWLTGFDAPCMHTM  648
             +K+VMTG++SDP   ++HIG K RR+LL  R +D  D L+LVIVRDMWLTGFD P MHTM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTM  656

Query  649   YLDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLRTALQQYSKNDQQHTGVDEA  708
             Y+DKPM+GH LMQAIARVNRVF+DKP+GLIVDY+GIA++L+ AL++Y+ +DQ +T++D  
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  709   QAIAVMMEKYQIVRDMYHGYDYLTAMSGTPQERLAMMGGAIEWILNlqqqlaataqtKEG  768
             +A+ +M+ KY++++DM    DY    S+   ER   ++ +++ ++ L             
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLG------------  764

Query  769   KKEAHRRYQDavlalskafalasasDEARHIREEVGFFQAIRAALVKSADHSGGSEPQR-  827
               + ++R+  +V  L+KAFAL ++   A+++ +E++FF+A++A+LVK  + +  +  ++ 
Sbjct  765   -EDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKT  823

Query  828   ----DLAIQQIVSRAVVSTEIVDILAASGINSPDISILSDAFLAEIQQMQRKHLALEALR  883
                 +  I+Q+VS++VV+ +++D+  + G++ PD+SILSD FL +++ +++K++A+E L 
Sbjct  824   PAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLN  883

Query  884   KLLNDRIRSRSTANLVQTKAFSERLEGAVARYHANAITTAQVLQELIQLAKDIRAARQRG  943
             +LL+++++S   +N   +K FSE L  ++ +Y++ +I T++V++ELIQLAKDI+  +QRG
Sbjct  884   RLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRG  943

Query  944   EATGLSDEEVAFYDALAENESAVQMMGDHTLRLIAHELLMRLRENVSVDWAHRDSARARM  1003
             +  GL+ +E+AFYDALA +E+A + MGD  LR IAHEL   ++EN++VDW+ RDSA+A+M
Sbjct  944   NELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKM  1003

Query  1004  RVLVKRILRKYGYPPDLQNTAVQTVLQQAE  1033
             RV V+R+L+KYGYPPDLQ+ AV+ V++QAE
Sbjct  1004  RVAVRRLLKKYGYPPDLQKMAVEQVVEQAE  1033

53) Rfer_4010 in NC_007908


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  840 bits (3182),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 496/1075 (47%), Positives = 767/1075 (72%), Gaps = 53/1075 (4%)

Query  2     LTESAIETFAIKLFERLGYVYLHGPDIAPDSDGPERSSYAEVLLPGRLAQAAGRINHKLP  61
             + E  +E  A+  ++ LGY Y  G +I+  S  PER S  +V+L  RL +A  +IN  + 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    RDVVEMALKEVQRAHSPDLLASNEAFHRLLTEGVPVSM-QKDGDTRGERVWLIDFARPEN  120
                +E AL E+    SP+LL +N +FH  L +G+ +   + +G++  E V +IDF  P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  121   NEFVVANQFTVIENHQKKRPDLVLFVNGIPLVVIELKNAADENATLKSAYQQIETYKQAI  180
             N+F+  NQ+T+++ + KKRPD+VLF+NG+P+VVIELKN+++E   +  +Y+Q+ETYK  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   PSLFTANALVVISDGLEAKAGSISASLSRFMAWKSADGKAEASHLVSQLEALILGMLNQG  240
             P LFT N ++V SDG+++KAGS++A+  RFM+W+S DG++E+S  ++ L+ LI GMLN  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  241   TLLDLVRHFIVFEKGSKEDPNTGQITISTIKKLAAYHQYYAVNAAVASTLRAADMGGPLS  300
             TLLDL+R F++F+ ++K     G+I+    K LAAYHQYYAVN AV  +L          
Sbjct  245   TLLDLIRYFVLFQDDGK-----GHIS----KILAAYHQYYAVNKAVDRAL----------  285

Query  301   VRENPASYGLPGIADQPKSDMKAGVVWHTQGSGKSLSMVFYTGKIVLTLDNPTVLVITDR  360
                         +A   ++D K+GV+WHTQGSGKSL+MVF++GK++  L+NPT++V+TDR
Sbjct  286   ------------LASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDR  333

Query  361   NDLDDQLFNTFA-----ASKQLLRQEPVQAKDREHLKALLKVAAGGVVFSTIQKFQPDEG  415
             NDLD+QL++TF      ++K LLRQ P QA  R +LK+LL V +GG+VF+T+QKF+P++ 
Sbjct  334   NDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQN  393

Query  416   NVY-DQLSNRPNIVVIVDEAHRTQYGFAAKTVDEKNADGMVIGKKVVYGFAKYLRDALPR  474
             +     L++R N++V+ DEAHRTQYGF AK  D+K       G  + YG+AKYLRDALP 
Sbjct  394   ETTMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALPN  445

Query  475   ATYLGFTGTPIEKTDVNTPAVFGNYVDIYDIAQAVEDGATVRIYYESRLAKVSLSEEGKK  534
             AT++GFTGTP+  TD NT  VFGNY+D+YD++QAV DG+TV+IYYESR+  ++L++ +  
Sbjct  446   ATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SLD  504

Query  535   LIAeldeeleqdeltetqKPKAKWTKMEALIGSEQRVKNIARDIVGHFEARQEVFAGKGM  594
             L    ++  E++E    Q+ K+KW+++EAL G+  RV  +A+DI+ HFE+RQ+   GKGM
Sbjct  505   LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGM  564

Query  595   VVSMSRRIAADLYDEIIKLRPDWHADELSKGVIKVVMTAASSDGPKLAKHHTTKEQRKLL  654
             +V+MSRRIA DLYDEII+L+P+WH+D+  KGVIKVVMT++SSD   + +H   K +R+LL
Sbjct  565   IVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLL  624

Query  655   AERMKAEDDPLKLVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAIARVNRVYKDKPGG  714
               RMK  DD L+LVIVRDMWLTGFD PSMHT+YIDKPMKGHNLMQAIARVNRV+KDKPGG
Sbjct  625   EKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGG  684

Query  715   LVVDYLGIAADLKEALSFYSDAGGKGDPTLLQEQAVGLMLEKLEVISALYHGFAYEHYFG  774
             L+VDY+GIA  LKEAL  Y+++ ++++ ++  ++AV LML K +VI  +   + Y  + +
Sbjct  685   LIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNS  743

Query  775   ANTAQKLSLILAAEEHILGL-DDGRKRYINEVTALSQAFAIAIPHEQAMDVKDEVGFFQA  833
              + +++   I  + + ++GL +D R+R+I+ VT L++AFA+   +  A +++DE++FF+A
Sbjct  744   DKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKA  803

Query  834   VKARLVKY----DSVEGERSNEEIETTIRQVIDQALVSEKVIDVFDAAGIKKTDISILSD  889
             VKA LVK           ++  E+E+ I Q++ Q++V+E VIDV+++ G+ + D+SILSD
Sbjct  804   VKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSD  863

Query  890   EFLAELKGYEHKNVALEVLKKLLNDELKIRAKRNLVQSRSLMEMLEASIKKYHNKILTAA  949
             +FL ++ G  +KNVA+E+L++LL++++K   K N   S+ + EML  SI+KY+++ + ++
Sbjct  864   DFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETS  923

Query  950   EVMDELIKVSKEIVAADDEARHMGLSDFEYAFYTAVANNDSARELMQQDKLRELAVVLTQ  1009
              V++ELI+++K+I   ++ + ++GL+  E AFY A+A++++A+E M +  LR +A  LT+
Sbjct  924   KVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTK  983

Query  1010  RVRENASIDWTIKENVRAKLKVIVKRTLRQFGYPPNMELLATETVLKQAEMIANE  1064
              V+EN ++DW+ +++ +AK++V V+R L+++GYPP+++ +A E V+ QAE++AN+
Sbjct  984   TVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

54) Bxe_A0222 in NC_007951


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  839 bits (3178),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/1045 (48%), Positives = 762/1045 (73%), Gaps = 32/1045 (3%)

Query  2     TEDQLEQETLDWLADVGYRCLFGPDLAPDGANPERADYRHVLLVERLRGAVARLNPGIPP  61
              ED+LEQ +L+WL  +GY    G +++  +  PER   ++V+L ERL  A+ ++N++I P
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    ATREDALQQVRDLGIPALLSANRHFHQLLVGGVPVE-YQKDGELRGDFVRLVDWADPAAN  120
                E AL+++     P LL  N  FH+ L+ G+ +E Y+ +G+   ++V+++D   P  N
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  121   EWLAVNQFAIKGPQHARRPDVMLFVNGVPLVLLELKNPADQNADIWKAYDQIQTYKAQIP  180
             + LAVNQ++I   +  +RPD++LF+NG+P+V++ELKN++++  ++  +Y+Q++TYK +IP
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DVFQYNEVLVISDGSQARMGSLSADAERFMQWRTIDGATLDPLGQFNELETLIRGVLAPT  240
             ++F +NEVLV SDG +++ GSL+A+ +RFM WR+ DG T ++   +  L+ LI+G+L P 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQT-ESSPGLASLDVLIHGMLNPE  244

Query  241   YLLDYLRFFVLFEDDGT--LVKKIAGYHQFHAVCAAIQQVVTASRPGASHKGGVVWHTQG  298
              LLD +R+FVLF+DDG   + K +A+YHQ+ AV  A+++ + AS   +  KGGV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQG  304

Query  299   SGKSITMTCFAARVMQEAAMENPTIVVITDRNDLDGQLFGVF-----SLAQDLLREQPVQ  353
             SGKS+TM  F+++++Q   ++NPT+VV+TDRNDLD QL++ F       +++LLR+ P Q
Sbjct  305   SGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  354   AGTRQDLRAKLANRPSGGIVFATIQKFMPGEDEDTYPVLSDRNNIVVIADEAHRTQYGFE  413
             A TR++L++ L+   SGGIVF+T+QKF P ++E T + L++R+N++V+ADEAHRTQYGF+
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFN  421

Query  414   AQLRGKPGQEKYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGEYIHVYDMQQA  473
             A+  +K    KY  GYA+ LRDALPNATFV+FTGTPV+S D++T+ VFG+YI+VYDM QA
Sbjct  422   AKYDDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  474   KEDGATVAIYFESRLAKLSLKAEDLPHIdaevdelaedeeeSQQAKLKSRWAALEKVVGA  533
               DG+TV IY+ESR+  L+L ++ L ++D   ++++ED+EE  + +LKS+W+ +E + GA
Sbjct  480   VADGSTVKIYYESRVIPLNL-PQSL-DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  534   EPRVAAVAADLVAHFEERNKAQNGKAMVVAMSREICVHLYDEIIKLRPDWHDPDPEKGAV  593
              PRV A+A D++ HFE R++A +GK+M+V+MSR I V+LYDEII+L+P+WH  D +KG +
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  594   KIVMTGSASDKALLRPHIYSGQVKKR--LEKRFKDPADPLRMVIVRDMWLTGFDAPCVHT  651
             K+VMTGS+SD + ++ HI  G  K+R  LEKR KD  D L++VIVRDMWLTGFD P +HT
Sbjct  598   KVVMTGSSSDPTSFQRHI--GPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHT  655

Query  652   LYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKSALKEYTASNGRGRPTVD  711
             +Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GIA+ LK ALKEYT S+ +++ ++D
Sbjct  656   MYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESD-QAQTAID  714

Query  712   AAEAYSVLEEKLDVLRGMLHGYDYSGFLTGGHKC-----LAGAANHVLGL-KDGKKRFAD  765
             +  A  ++  K DV+++ML   DYS F  ++ K      ++ + + V+GL  D ++RF  
Sbjct  715   TDKAVELMLLKYDVIQDMLYNLDYSKF-NSDKKSERYYTISNTMDYVIGLGEDERQRFIK  773

Query  766   TALAMSKAFTLCCTLDEAKLVREEVAFMQAVKVILTK----RELSDKKKTNEERELAIRQ  821
             T   ++KAF+LC T   A+ + +E+AF +AVK  L K       +  +KT  E E  I Q
Sbjct  774   TVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  822   IISSAVVSEKVVDVFEAVGLEKPNIGILDEAFLAEVRNLPERNLAVELLERLLEGEIKSR  881
             ++S +VV+E V+DV++++GLE+P+++IL + FL +V  L ++N+AVELL+RLL G++KS 
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  882   FASNVVQEKKFSEMLANVVTRYQNRAIETAQVIEELIDMAKKFRAAATRGEELGLTEDEI  941
               +N    K+FSEML+N + +Y++R+IET++VIEELI++AK ++    RG+ELGL  DEI
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEI  953

Query  942   RFYDALANNESAVRELTDETLKKIAHELTENLRQNITVDWSERESVRARLRLMVKRILRK  1001
              FYDALA++E+A   + D  L+ IAHELT  +++N+ VDWS R+S +A++R+ V+R+L+K
Sbjct  954   AFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKK  1013

Query  1002  YKYPPDQQDGAVELVLQQAQALGEA  1026
             Y YPPD Q  AVE V++QA+ +++ 
Sbjct  1014  YGYPPDLQKMAVEQVVEQAELMANN  1038

55) Galf_1221 in NC_014394


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  839 bits (3176),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 492/1057 (47%), Positives = 756/1057 (72%), Gaps = 53/1057 (5%)

Query  19    RGLGYSIEQEENIGPDGHRPERDSHDVVVLKKRLEDAVALLNPGMPLDARQDAIRKVMQS  78
             ++LGY   + ++I+  +  PER S+  VVL  RLE A+  +N+++     + A++ +   
Sbjct  19    QSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLE  78

Query  79    ELPLMLEENRRIHKLMTEGVDVEYYADDGTLTAGKVSLINFERPEQNDWLVVSQFVVIAG  138
               P +LE+N  +H  + +G+++E Y D+G      V +I+FE P++ND L V+Q+ ++ G
Sbjct  79    KSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNG  138

Query  139   QYNRRPDVVVFVNGLPLGVIELKAPGSGNATLVGAFNQLQTYKKQIPALFNTNALLVTSD  198
             +Y++RPD+V+F+NGLP+ VIELK + +    + ++++QL+TYK +IP LF  N +LVTSD
Sbjct  139   DYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSD  198

Query  199   GITARVGSLSADLERFMPWRTTDGKDVAPKGAPELSTLIEGVFEQRRLLDMLCHFTVFGE  258
             GI ++ GSL+A+ +RFM WR+ DG+  ++ G + L  LI+G+++   LLD++  F +F +
Sbjct  199   GINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQD  258

Query  259   TGSG-LAKIIAGYHQFHAVIRAVDSTLRASSQWQGVQEDPRDYGLPSVKTQAKGDRRAGV  317
              G G ++KI+A+YHQ+ AV +AVD +L ASS+                    +GD ++GV
Sbjct  259   DGKGHISKILAAYHQYYAVNKAVDRALLASSE--------------------QGDGKGGV  298

Query  318   IWHTQGSGKSLLMAFYAGQLVKHPAMANPTLVVLTDRNDLDDQLFATFSMCRD-----LI  372
             IWHTQGSGKSL M F++G+L+    + NPTLVV+TDRNDLD+QL++TF   ++     L+
Sbjct  299   IWHTQGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLL  356

Query  373   RQTPVQADSREDLTKLLARASGGVIFTTLQKFG-----ETSQALTDRRNVVVIADEAHRS  427
             RQTP QA++R +L  LL+  SGG++FTT+QKF       T  ALT+R+NV+V+ADEAHR+
Sbjct  357   RQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRT  416

Query  428   QYGFRAKVDAKTGEISYGFAKYLRDALPNASFIGFTGTPIEADDVNTPAVFGNYIDVYDI  487
             QYGF AK D K   I YG+AKYLRDALPNA+F+GFTGTP+ + D NT  VFGNYIDVYD+
Sbjct  417   QYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDM  476

Query  488   SRAVEDGATVPIYYESRLARIELDEDEKPKIDAEVNELTEDDPEVEQERFKRKWSTVEAL  547
             ++AV DG+TV IYYESR+  ++L +     +D   N++TED+ E  ++R+K KWS +EAL
Sbjct  477   TQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEAL  534

Query  548   VGSDKRLALVAQDMVTHFEDRVAALDGKAMVVCMSRRICVKLYDEIVKLRPDWHSADDNA  607
              G+  R+  +A+D++ HFE R  A+ GK+M+V MSRRI V LYDEI++L+P+WHS DD+ 
Sbjct  535   AGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDK  594

Query  608   GAVKIVMTGAASDPEDWQQHIGNkarrdllakrardakdPLKLVIVRDMWLTGFDAPCMH  667
             G +K+VMTG++SDP   Q+HIG K RR+LL KR +D  D L+LVIVRDMWLTGFD P MH
Sbjct  595   GVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMH  654

Query  668   TMYVDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALQQYSKNDQENTGVD  727
             TMY+DKPM+GH LMQAIARVNRVF+DKP+GLIVDY+GIA++LK AL++Y+ +DQ +T++D
Sbjct  655   TMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAID  714

Query  728   ESQAIAVLMEKYEVVRDMYHGFDYASAMGGTPQERLAMMAGAIEWILDMQQKLAAKEKTK  787
               +A+ +++ KY+V++DM   +DY+   ++   ER   ++ +++ ++++ +         
Sbjct  715   TDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGE---------  765

Query  788   DGKKDAHRRYQDAVlalskafslasasDEAREIREEVGFFQAIRAALVK-----SSTGSG  842
                 D ++R+  +V  L+KAF+L ++   A+E+ +E++FF+A++A+LVK         + 
Sbjct  766   ----DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTR  821

Query  843   VTQQERELAIQQIVSRAVVSTEIVDILAAAGIKSPDISILSDEFLAEVQQMERKNLALEA  902
              T  E E  I+Q+VS++VV+ +++D+  + G+  PD+SILSD+FL +V+ + +KN+A+E 
Sbjct  822   KTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVEL  881

Query  903   LRKLINDGIRSRSKSNVVQTKAFSERLEDAVARYHANAITTAEVLQELIDLAKDIRAARQ  962
             L +L+++ ++S  K+N   +K FSE L +++ +Y++ +I T+ V++ELI+LAKDI+  +Q
Sbjct  882   LNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQ  941

Query  963   RGEEQGLSEDEIAFYDALAENESAIQMMGDDKLKLIAHELLVSLRENVSVDWAHRDSARA  1022
             RG+E GL+ DEIAFYDALA +E+A + MGD  L+ IAHEL  +++EN++VDW+ RDSA+A
Sbjct  942   RGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKA  1001

Query  1023  RMRVLVKRILRKYGYPPDLQDAAVQTVLQQAEALSST  1059
             +MRV V+R+L+KYGYPPDLQ  AV+ V++QAE +++ 
Sbjct  1002  KMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

56) Clocl_1698 in NC_016627


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  838 bits (3173),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 521/1053 (50%), Positives = 766/1053 (73%), Gaps = 35/1053 (3%)

Query  6     ESEIEKMAIEELVKLGYEYFSGPDIAPDAPFAERKGYGDVLLKKRLIDAVIQLNPGLPYD  65
             E ++E++A+E L  LGY+Y  G +I+  +  +ERK+  DV+L  RL  A+ ++N+++   
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  66    VVIEAVNKVSRISSSNLIGDNETFHKMLVDGVPVE-YRKNGDIVGDYVKLVDFSEDGVDN  124
              +  A++ ++   S+NL+ +N TFH  L++G+ +E Y  +G+ + + VK++DF  +  +N
Sbjct  67    FIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDF--EYPQN  124

Query  125   NEFLVVNQFTVIENNNNKRPDILLFINGIPMVLFELKNPVDENATIRKAYDQICTYKAII  184
             N+FL VNQ+T+++ + +KRPDI+LFING+P+V++ELKN+ +E   +  +Y+Q+ TYK  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  185   PSLFTYNEICVISDGLEAKAGSLTAPFSRFSTWKTKDGLNEASRFEDQLTTLIHGLCNKK  244
             P LFT+NE+ V SDG+++KAGSLTA + RF TW++KDG  E+S     L  LIHG+ N  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  245   TLLDYIRNFITFEksktedkktkitkvetvkkiAAYHQYYAVNKAVKSTIEAARADGSKK  304
             TLLD IR F+ F+     +    +         AAYHQYYAVNKAV  ++ A+  +G  K
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKIL---------AAYHQYYAVNKAVDRALLASSEQGDGK  295

Query  305   AGVIWHTQGSGKSLSMVFYAGKLVQNLNNPTIVVITDRNDLDDQLFDTFA-----GNSDL  359
             +GVIWHTQGSGKSL+MVF++GKL+Q LNNPT+VV+TDRNDLD+QL+ TF      +  +L
Sbjct  296   GGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGL  355

Query  360   LRQPPKQAESCEHLKELLKVASGGIVFTTIQKFIPDNDSSVYELLSERDNIVVIADEAHR  419
             LRQ PKQAE+  +LK LL V SGGIVFTT+QKF P+++ +    L+ER N++V+ADEAHR
Sbjct  356   LRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHR  415

Query  420   TQYGFNAKLREIKDENNQVVGQRIAYGFAKYMRDALPNATFIGFTGTPVEKQDANTPAVF  479
             TQYGFNAK  +         G+ I YG+AKY+RDALPNATF+GFTGTPV   D NT  VF
Sbjct  416   TQYGFNAKYDDK--------GEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVF  467

Query  480   GNYIDIYDIAQAVEDKVTVKIYYESRLAKVNLTEEGKKLIeefdreleevdekdeakaak  539
             GNYID+YD++QAV D  TVKIYYESR+  +NL +     ++E   ++ E +E D  +  K
Sbjct  468   GNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLK  525

Query  540   mkwakleaIVGNKERLATLAKDIVTHFEDRQKVFQGKAMIVAMSRRIAVDLYNEIIKLRP  599
              KW+++EA+ G K R+ +LAKDI+ HFE RQ+  +GK+MIV+MSRRIAVDLY+EII+L+P
Sbjct  526   SKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKP  585

Query  600   EWHSDDLDKGAIKVVMTSSSSDGPEMQKHHTTKEQRKMLAQRMKDENDPLKIVIVRDMWL  659
             EWHSDD DKG IKVVMT+SSSD    Q+H   K +R++L +RMKD +D L++VIVRDMWL
Sbjct  586   EWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWL  645

Query  660   TGFDVPCLNTMYIDKPMKDHNLMQAIARVNRVFKDKPGGLIVDYIGIAPNLKKALSFYAE  719
             TGFDVP ++TMYIDKPMK+HNLMQAIARVNRVFKDKPGGLIVDY+GIA +LK AL  Y+E
Sbjct  646   TGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTE  705

Query  720   SGGKGVPAETQARAVEIMLEKLEVVRQILHGFDYTSFFKAEVKDKLSIILRAEDFILS-T  778
             S+    + +T+ +AVE+ML K +V++++L  +DY+ F      ++   I  + D++++  
Sbjct  706   SDQAQTAIDTD-KAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLG  764

Query  779   DDKKARFIKEVTLLSQAYALAKPDKATVTHAEEIAFFQAVKARLTKFETSGESG------  832
             +D + RFIK VT L++A+AL   + ++    +EIAFF+AVKA L K+  +   G      
Sbjct  765   EDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTP  824

Query  833   INYDSVIKNIVDSAIVSDEVVDIFDAAGIEKPELSILSDEFLMEIKGMKHKNLAIELLKK  892
              + ++ I+++V  ++V+++V+D++++ G+E+P+LSILSD+FL ++ G+K+KN+A+ELL++
Sbjct  825   AEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNR  884

Query  893   ILSDEIKVRSKYNLTKSKSLMEMLTLALKRYQNNLLTTAEIIEELIRIAKEIKNADRRGE  952
             +L +++K   K N T SK + EML  ++++Y++  + T+ +IEELI++AK+IK+ ++RG+
Sbjct  885   LLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGN  944

Query  953   ELGLSEDELAFYDALETNDSAVKVLGDETLRTIARELADKVRKNATIDWTLKESVRAKLM  1012
             ELGL+ DE+AFYDAL ++++A   +GD  LR+IA+EL+  V+ N  +DW+ ++S +AK+ 
Sbjct  945   ELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMR  1004

Query  1013  VLVRRTLNKYGYPPDKQQRAVETVMKQAENLAD  1045
             V VRR L+KYGYPPD Q+ AVE V+ QAE +A+
Sbjct  1005  VAVRRLLKKYGYPPDLQKMAVEQVVEQAELMAN  1037

57) Neut_0537 in NC_008344


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  838 bits (3174),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 500/1077 (47%), Positives = 772/1077 (72%), Gaps = 51/1077 (4%)

Query  1     MAF-LSEAAVEQALLDQLRALGYSIEQEEIIGPDGKQSEHESHDEVVLKKRFEDAVARLN  59
             M F ++E  +EQ  L+ L++LGY   + + I+  +  +E+ S+ +VVL  R+E A+ ++N
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  60    PGLPLEARQDAVHKVMQSELPSLLEENRRLHKLLTEGVDVEYYTNDGTLTAGKVALINFE  119
             +++     + A+H +     P+LLE+N  +H  L +G+++E Y ++G      V +I+FE
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  120   HPEQNDWLAVSQFVVINDQNNRRPDVVVFVNGLPLGVIELKAPGNAGAHLLGAFNQLQTY  179
              P++ND LAV+Q+ ++N++ ++RPD+V+F+NGLP+ VIELK + N    + ++++QL+TY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KQQIPQLFNTNALLVTSDGITARVGSLSADLERFMPWRTTDGTRIEPKGMPEMATLIEGV  239
             K +IPQLF  N +LVTSDGI ++ GSL+A+ +RFM WR+ DG    + G++ +  LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  240   FEQGRFLDLLRHFTVFGETGGGLI-KIIAGYHQFHAVKKAVVSTLRASQPSDRLGVAEDP  298
             ++   +LDL+R F +F + G G I KI+A+YHQ+ AV+KAV  +L        L+ +E+ 
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRAL--------LASSEQ-  291

Query  299   AVYGLPSVKVQPPGDHKAGVIWHTQGSGKSLLMAFYAGLLVFDSRMANPTLVVLTDRNDL  358
                          GD K+GVIWHTQGSGKSL M F++G L+    + NPTLVV+TDRNDL
Sbjct  292   -------------GDGKGGVIWHTQGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDL  336

Query  359   DDQLFATFAMCKD-----LLRQTPVQAQDREHLRTLLNRASGGVIFTTLQKFSPAADETD  413
             D+QL++TF   K+     LLRQTP QA+ R +L++LL+  SGG++FTT+QKF P  +ET 
Sbjct  337   DNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETT  396

Query  414   FPALTNRSNIVVIADEAHRSQYGFRAKVASKTGEIAYGFAKYLRDALPHASFIGFTGTPI  473
              +ALT+R N++V+ADEAHR+QYGF AK   K   I YG+AKYLRDALP+A+F+GFTGTP+
Sbjct  397   MAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPV  456

Query  474   EAADVNTPAVFGHYIDIYDISRAVEDGATVPIYYESRLARIELDEDEKPHIDAEIEALLE  533
              ++D NT  VFG+YID+YD+++AV DG+TV IYYESR+  ++L +    ++D   + + E
Sbjct  457   ASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITE  514

Query  534   DEVEASAERTKQKWSTVEALVGSDKRLALVAADLVQHFEDRVAALSGRAMMVCMSRRICV  593
             D+ E   +R K KWS +EAL G+  R+  +A D++QHFE R  A+ G++M+V MSRRI V
Sbjct  515   DQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAV  574

Query  594   ALYDQIIKLCPDWHSNDDNAGSIKIVMTGTASDPVEWQQHIGNkarrdllakrardPQDP  653
              LYD+II+L P+WHS+DD+ G IK+VMTG++SDP   Q+HIG K RR+LL KR +D +D 
Sbjct  575   DLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDE  634

Query  654   LRLVIVRDMWLTGFDAPSIHTMYIDKPMRGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQ  713
             L+LVIVRDMWLTGFD PS+HTMYIDKPM+GH LMQAIARVNRVF+DKP+GLIVDY+GIA+
Sbjct  635   LQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAE  694

Query  714   NLKSALAQYSKPDQDKTGIDEREAVAVLLEKVEIVRDMFFGFDYQTGLGGTPSERLAMMA  773
             +LK AL +Y+ +DQ +T+ID   AV ++L K ++++DM++ +DY    ++  SER   ++
Sbjct  695   SLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTIS  754

Query  774   SAIEWILDKQQQWAAAEKTPEASRQARRRFADGVLSLSKAFALVASSDEARGIREEVGFF  833
             ++++ +++              + + R+RF   V  L+KAFAL A+   A+ + +E++FF
Sbjct  755   NTMDYVIG-------------LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF  801

Query  834   QAIRAALVK-----TAGGAGAIRQDRELAIQQIVSRAVVSTEIVDILAAAGIQTPDISIL  888
             +A++A+LVK       G +     + E  I+Q+VS++VV+ +++D+  + G++ PD+SIL
Sbjct  802   KAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSIL  861

Query  889   SDEFLLEVQQMEKKNLGLEALRKLLNDSIRSRTRTNVVETRAFTERLEDAIARYHANAIT  948
             SD+FL +V+ + +KN+++E L +LL++ ++S  +TN   ++ F+E L ++I +Y++ +I 
Sbjct  862   SDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIE  921

Query  949   TAEVLQELINLAQDIRAARNRGEEQGLSLDEIAFYDALAENESAVQVMGDDNLRVIAHEL  1008
             T+ V++ELI+LA+DI+  ++RG+E GL+ DEIAFYDALA +E+A + MGD +LR IAHEL
Sbjct  922   TSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHEL  981

Query  1009  LVSLKENIAVDWAHRESararlrvlvkrilrkYGYPPDLQDAAVQTVLQQAEALSSE  1065
               ++KEN++VDW+ R+SA+A++RV V+R+L+KYGYPPDLQ  AV+ V++QAE ++++
Sbjct  982   TKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

58) hsdR in NC_012489


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  835 bits (3160),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 480/1064 (46%), Positives = 769/1064 (73%), Gaps = 51/1064 (4%)

Query  3     RFSESIVEDAALEWLAGLGYEVRHGPDMAAGEPGAERSDPGYRDVVlehrlraallrlnp  62
             +F+E  +E+ ALEWL +LGY+ + G +++     +ER     +DVVL++RL  AL ++N+
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSD--KDVVLHERLEKALRKINS  61

Query  63    llqaEAIDEAYRKLTRLDAPSAMDRNRAMHRMLLNGVEVEFRRPDGSIGGGQVQIFDFDT  122
              +++  I+ A + LT   +P+ ++ N + H  L+NG+E+E    +G      V+I+DF+ 
Sbjct  62    DIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEY  121

Query  123   PTNNNWLAVNQFSVAEGQHHRRPDVVVFVNGLPLAVLELKNAADENATIWSAWQQLQTYQ  182
             P NN+ LAVNQ+++ +G+  +RPD+V+F+NGLP+ V+ELKN+++E   +  + +QL+TY+
Sbjct  122   PQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  183   AQIPTLFTSNLALVISDGVQARIGALGAGKEWFKPWRTVSGTTSAPSSLSELEVLLHGVF  242
              +IP LFT N  LV SDG++++ G+L A  ++F  WR+  G T ++++L+ L+VL+HG++
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGML  241

Query  243   EHRRFLDLLHYFVAFEQEDDGPLVKKLAGYHQYHAVNVAVEETLRAARSVNPDRIAENIG  302
             +   +LDL++YFV F++++ G + K LA+YHQY AVN AV+ +L                
Sbjct  242   NPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRAL----------------  285

Query  303   RYSSGEQPGGEPGDRRVGVVWHTQGSGKSLTMAFYAGRVILHPGMANPTVVVITDRNDLD  362
                    +++E GD + GV+WHTQGSGKSLTM F++G++I    + NPT+VV+TDRNDLD
Sbjct  286   ------LASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLD  337

Query  363   EQLFGTFARC-----RNLLRQEPVQAKDRADLRKQLAVSAGGVIFTTIQKFMPDERGDKH  417
             +QL++TF +      + LLRQ P QA  R +L+  L+V +GG++FTT+QKF P++     
Sbjct  338   NQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTM  397

Query  418   PPLSDRRNVIVIADEAHRSQYEFHD-----------GFAGHMRDALPNASFVGFTGTPIE  466
             ++L++R+NVIV+ADEAHR+QY F+            G+A  +RDALPNA+FVGFTGTP+ 
Sbjct  398   AALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVA  457

Query  467   KADANTRQVFGEYISVYDIQRAVVDGATVPIYYESRLAKLEFAESEKLGIDSAFeevteg  526
              +D NT+ VFG+YI VYD+ +AV DG+TV IYYESR+  L++++S  L++D A++++TE+
Sbjct  458   STDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITED  515

Query  527   eeverkeQLKSKWAQLEVIAGADTRLDLIARDIVDHFERRNEVLDGKAMIVVMSRRIAVA  586
             +E + K++LKSKW+++E +AGA  R++ +A+DI++HFE R++ + GK+MIV MSRRIAV 
Sbjct  516   QEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVD  575

Query  587   LYNRIVALRPEWHSDRNDEGLLKIVMTGSASDPVDWQPHIRNKTDREALATRFRDGSSGF  646
             LY+ I+ L+PEWHSD +D G++K+VMTGS+SDP   Q HI  K  R+ L  R +D    +
Sbjct  576   LYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDEL  635

Query  647   RLVIVRDMWLTGFDCPSLATMYVDKPMRGHGLMQAIARVNRVFKDKPGGLVVDYLGLADA  706
             +LVIVRDMWLTGFD PS+ TMY+DKPM+GH LMQAIARVNRVFKDKPGGL+VDY+G+A++
Sbjct  636   QLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAES  695

Query  707   LKSALATYTEAGGTGKTALDQEEAVAVMLEKHEICVGLFHGFDRSAWYVGTAQQRLSLLP  766
             LK AL  YTE+ + ++TA+D + AV +ML K ++  +++  +D S    +   +R   ++
Sbjct  696   LKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTIS  754

Query  767   AAQEHVLALP-DGKERLMRHVSELTRAFALAVPHDTAMHIRDDVGFFQAVRAVLAK----  821
              + + V++L  D ++R+++ V+EL +AFAL   + TA ++ D+++FF+AV+A L K    
Sbjct  755   NTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  822   NEVGRAR-PRSDVEHAIRQIVSKALVSDEVIDVFTAAGLKKPDISILSDEFLAEVRGMPH  880
                G++R   ++VE  I Q+VS+++V+++VIDV+ + GL +PD+SILSD+FL +V G+ +
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  881   RNLAVELLQKLLKGEIRTRSRRNVVQARSFAGLLEQALRRYQNRAVETAQIIEELIKLAK  940
             +N+AVELL++LLKG++++  + N   ++ F+ +L +++ +Y++R++ET+++IEELI+LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  941   DMRAANARGEALGLTDDELAFYDALEVNDSAVQVLGDEQLRVIARELVATIRKNVSIDWA  1000
             D++  + RG+ LGL  DE+AFYDAL  +++A + +GD +LR IA+EL  T++ N+++DW+
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWS  994

Query  1001  IRDNMRAQLRVYVKRILRKYGYPPDKQERATQTVLEQAELLSSE  1044
              RD+ +A++RV V+R+L+KYGYPPD Q  A + V+EQAEL++++
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

59) LFE_0359 in NC_017094


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  834 bits (3159),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 485/1041 (47%), Positives = 756/1041 (73%), Gaps = 32/1041 (3%)

Query  4     LTESDLEQIVLGWFGELGYTILHGPEIAPEASLSERSSYSDPLLPAHVQIALSRLNPSLP  63
             + E DLEQ+ L W+  LGY    G EI+  +  +ER S  D +L  +++ AL ++N+ + 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  64    PEALDDAFRKLTRIDSPTLIQRNHAFHRFLVEGIPVE-YRTQDRIVSDSARLFDLADLEN  122
             P  ++ A++ LT   SP L++ N +FH  L++GI +E Y  +++ + +  +++D+   +N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  123   NDWLVVNQFTVVEGHHNRRPDIVVFVNGIPLGVIELKNPGDEKATIWSAFNQIQTYKEEI  182
             ND L VNQ+T+V+G+ ++RPDIV+F+NG+P+ VIELKN+ +E   +  +++Q++TYK  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   PSLFAFNELLVISDGYEARIGSLSSNKERFAPWRTIEGEEEARMR-PPIEVLTKGVFRKE  241
             P LF+FNE+LV SDG +++ GSL++N +RF  WR+ +G+ E+    ++++VL  G++  E
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  242   HLLDLVSHFVVFEAETDGSLIKKLAGYHQFHAVNKAVETTLTASRPKGDRRIGVIWHTQG  301
              LLDL+  FV+F+ +  G + K LA+YHQ+ AVNKAV+ +L AS  +GD + GVIWHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQG  304

Query  302   SGKSLTMVFYAGKVVLHPAMENPTLLVLTDRNDLDGQLFGTFSRCQE-----ILRQTPVQ  356
             SGKSLTMVF++GK++    ++NPTL+V+TDRNDLD QL++TF + +      +LRQTP Q
Sbjct  305   SGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  357   ADARQRLRELLRVASGGVVFTTIQKFFPDPERDGDTFPRLSDRRNIVVIADEAHRSQYDF  416
             A++R+ L+ LL V SGG+VFTT+QKF  +PE++  T + L++R+N++V+ADEAHR+QY+F
Sbjct  363   AETRKELKSLLSVESGGIVFTTMQKF--EPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  417   MD-----------GFARHMRDALPNASFIGFTGTPVELSDRNTKAIFGDYISVYDIQRAV  465
                          G+A+ +RDALPNA+F+GFTGTPV  +D+NT+ +FG+YI VYD+ +AV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  466   DDGATVPIYYESRLARLDLPEAEKPHIDQefeevteteeeerkekLKSKWAALEAVVGTE  525
              DG+TV IYYESR+  L+LP++   ++D+ ++++TE +EE+ K++LKSKW+ +EA+ G+ 
Sbjct  481   ADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  526   KRIGLIAKDIVDHFEKRLEALDGKAMIVGMSRRICLDLHKALITLRPEWYDKDDTKGILK  585
              R+  +AKDI++HFE R +A+ GK+MIV MSRRI +DL   +I L+PEW   DD KG++K
Sbjct  539   PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  586   VVMTGSATDPVEWQEHIRNKPRREKLANRFRNPNDPFRIVIVRDMWLTGFDAPSLHTMYL  645
             VVMTGS++DP   Q HI  K RR+ L +R ++ +D +++VIVRDMWLTGFD PS+HTMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  646   DKPMRGHGLMQTIARVNRVFKDKPGGLIVDYLGIAHELKTAMATYTQSGGSGKPTLDQDD  705
             DKPM+GH LMQ+IARVNRVFKDKPGGLIVDY+GIA+ LK A+  YT+S + ++ ++D D 
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDK  717

Query  706   AVAALLKHYEICCGLFHGFDWSS-GKQSPEKRLSLLPFAQDHILS-QENGQKRLAKAVSD  763
             AV  +L  Y++  +++  +D S    +    R   ++ + D +++  E+ ++R+ K+V++
Sbjct  718   AVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTE  777

Query  764   LSKAFALAVPHPRGIEIRDDVRFFQEVNAVLTK--SGPSSG---RDPGDMDHAIRQIVSG  818
             L+KAFAL   +P + E+ D++ FF+ V+A L K    P  G   + P++++  I Q+VS 
Sbjct  778   LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  819   AIVSEGVIDIFEAAGLMRPDLSILSEEFLADVRNMPQKNLAVELLRKLLDNEIKTRSRKN  878
             ++V+E+VID++++ GL +PDLSILS++FL DV  + QKN+AVELL +LL  ++K+  + N
Sbjct  838   SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  879   VVLSRSFSEMLEKTLRAYHNRAIETVQVIEELITLAGEIRKAEKRGEDLGLSEDEVAFYD  938
               +S+ FSEML +++  Y++R+IET +VIEELI LA +I++ ++RG++LGL+ DE+AFYD
Sbjct  898   ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYD  957

Query  939   ALETNDSAVKILGDKVLCEIARELVQTIRNNVTVDWSIREDRRAHIKRLVKRILKKNGYP  998
             AL ++++A   +GDK L  IA+EL +T+++N+ VDWS R+  +A ++  V+R+LKK GYP
Sbjct  958   ALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYP  1017

Query  999   PDKQEKATETVLEQAETLCQD  1019
             PD Q  A E V+EQAE + ++
Sbjct  1018  PDLQKMAVEQVVEQAELMANN  1038

60) XF2739 in NC_002488


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  834 bits (3159),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 475/1029 (47%), Positives = 748/1029 (73%), Gaps = 33/1029 (3%)

Query  21    GYSIEREENIGPDGYRPERASHDEVVLKQRFVDAVARLNPGLPPEARQDAIRKVTQSELP  80
             GY   + ++I+  +  PER S+ +VVL +R+  A+ ++N+++ P   + A++ +T    P
Sbjct  22    GYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSP  81

Query  81    SLLEENRRIHRLITEGVDVEYYAQDGTLTAGNVALIDFDHPQQNDWLAVNQFVVIADHYN  140
             +LLE+N  +H  + +G+++E Y ++G      V +IDF+ PQ+ND LAVNQ+ ++ ++Y+
Sbjct  82    NLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYK  141

Query  141   RRPDVVLFVNGLPLAVIELKAPGSINATLIAAFNQLQTYKEQIPALFNTNALLVTSDGMT  200
             +RPD+VLF+NGLP+ VIELK + +    +  +++QL+TYK +IP LF  N +LVTSDG+ 
Sbjct  142   KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGIN  201

Query  201   ARFGALSADLERFMPWRTTDGTDIAPKGVPELATLIEGICEPHRLLDLLRHFTVFRKTDA  260
             ++ G+L+A+ +RFM WR+ DG   ++ G++ L  LI+G+ +P+ LLDL+R F +F+  + 
Sbjct  202   TKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQDDGK  261

Query  261   G-LAKIIAGYHQFHAVRQAINSTVAASSPQGNQRIGVIWHTQGSGKSLLMAFYAGQLVKH  319
             G ++KI+A+YHQ+ AV +A++ ++ ASS QG+ + GVIWHTQGSGKSL M F++G+L+  
Sbjct  262   GHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLI--  319

Query  320   PAMANPTLVVLTDRNDLDDQLFTTFSQCSD-----LIRQTPVQAQSRDQVRKLLNRASGG  374
               + NPTLVV+TDRNDLD+QL++TF +  +     L+RQTP QA++R +++ LL+  SGG
Sbjct  320   QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGG  379

Query  375   VIFTTLQKFG-----DITEPLTTRRNVVVIADEAHRSQYGFKAKVDTKTGKISYGFAKYM  429
             ++FTT+QKF          +LT R+NV+V+ADEAHR+QYGF+AK D K   I YG+AKY+
Sbjct  380   IVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYL  439

Query  430   RDALPNASCIGFTGTPIEADDVNTPAVFGNYIDIYDISRAVEDGATVPIYYESRLARIAL  489
             RDALPNA+ +GFTGTP+ + D NT  VFGNYID+YD+++AV DG+TV IYYESR+  I+L
Sbjct  440   RDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRV--IPL  497

Query  490   DEAEKPQIDAEVNALTEADSEAEQERFKKKWATVETLVGSDKRLALIAKDIITHCEDRLA  549
             + ++  ++D   N +TE + E  ++R+K KW+ +E+L G+  R+  +AKDII H E R  
Sbjct  498   NLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQ  557

Query  550   ALDGKAMVVCMSRRICVALYDHIVALRPDWHSTDHKAGSLKIVMTGTASDPPQWRQHIGN  609
             A+ GK+M+V MSRRI V LYD+I+ L+P+WHS D+  G +K+VMTG++SDP   ++HIG 
Sbjct  558   AMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGP  617

Query  610   KarrdllaerardPKDPLKLVIVRDMWLTGFDAPCMHTMYLDKPMQGHGLMQAIARVNRV  669
             K RR+LL  R +D  D L+LVIVRDMWLTGFD P MHTMY+DKPM+GH LMQAIARVNRV
Sbjct  618   KKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRV  677

Query  670   FRDKPAGLIVDYIGIAQNLRTALQQYSKNDQQHTGVDEAQAIALMMEKYQIVRDMYHGYD  729
             F+DKP+GLIVDY+GIA++L+ AL++Y+ +DQ +T++D  +A+ LM+ KY++++DM    D
Sbjct  678   FKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLD  737

Query  730   YHTAMSGTPQERLAMMGGAIEWilnlqqqlaaiaqTKEGKKEAHRRYQDavlalskafal  789
             Y    S+   ER   ++ +++ ++ L               + ++R+  +V  L+KAFAL
Sbjct  738   YSKFNSDKKSERYYTISNTMDYVIGLG-------------EDERQRFIKTVTELGKAFAL  784

Query  790   asasDEARHIREDVGFFQAIRAALVKSADHSGGSEPQR-----DLAIQQIVSRAVVSTEI  844
              ++   A+++ ++++FF+A++A+LVK  + +  +  ++     +  I+Q+VS++VV+ ++
Sbjct  785   CATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDV  844

Query  845   VDILAASGINSPDISILSDAFLAEIQQMQRKHLALEALRKLLNDRIRSRSTVNLVQTKAF  904
             +D+  + G++ PD+SILSD FL +++ +++K++A+E L +LL+++++S    N   +K F
Sbjct  845   IDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRF  904

Query  905   SERLEGAVARYHANAITTAQVLQELIQLAKDIRAARQRGEASGLSDEEVAFYDALAENES  964
             SE L  ++ +Y++ +I T++V++ELIQLAKDI+  +QRG+  GL+ +E+AFYDALA +E+
Sbjct  905   SEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHET  964

Query  965   AVQMMGDHTLRLIAHELLMRLRENVSVDWAHRDSARARMRVLVKRILRKYGYPPDLQNTA  1024
             A + MGD  LR IAHEL   ++EN++VDW+ RDSA+A+MRV V+R+L+KYGYPPDLQ+ A
Sbjct  965   AKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMA  1024

Query  1025  VQTVLQQAE  1033
             V+ V++QAE
Sbjct  1025  VEQVVEQAE  1033

61) Dgeo_2012 in NC_008025


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  833 bits (3153),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 503/1054 (48%), Positives = 769/1054 (73%), Gaps = 34/1054 (3%)

Query  1     MAF-LSEAEVENALLDQLRALGYSIEREEDIGPDGHRPERESHDEVVLRKRFEDAVARLN  59
             M F ++E ++E+  L+ L++LGY   + ++I+  +  PER S+ +VVL+ R+E A+ ++N
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  60    PGVPLEARHDAVRRVTQSELPSLLAENRRLHKLLTEGVDVEYYADDGVLTAGKARLIDFD  119
             +++     + A++ +T    P+LL +N  +H  L +G+++E Y D+G       ++IDF+
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  120   DPANNDWLAVNQFVVINGQYQRRPDVVVFVNGLPLAVIELKAPGNDQATLTGAFNQLQTY  179
              P NND LAVNQ+ ++NG+Y++RPD+V+F+NGLP+ VIELK + N+   + ++++QL+TY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KGEITQLFRTNALLVTSDGISARVGSLSADFERFMPWRTTDGREVAPKGAPELETLIEGV  239
             K  I QLF  N +LVTSDGI+++ GSL+A+++RFM WR+ DG+  ++ G + L+ LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  240   FEHRRLLDLLRHFTVFGETGAGLI-KIIAGYHQFHAVRHAVERTVAASSAGGDRKAGVIW  298
             ++   LLDL+R F +F + G G I KI+A+YHQ+ AV  AV+R++ ASS  GD K+GVIW
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  299   HTQGSGKSLLMAFYAGLLVRHPALENPTLVVLTDRNDLDDQLFATFSMCRD-----LIRQ  353
             HTQGSGKSL M F++G L++   L+NPTLVV+TDRNDLD+QL++TF   ++     L+RQ
Sbjct  301   HTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   TPVQAEGREHLKTLLDRASGGVIFTTLQKFGEID-----GPLTTRRNVVVIADEAHRSQY  408
             TP QAE R +LK+LL   SGG++FTT+QKF   +     ++LT R+NV+V+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQY  418

Query  409   GFKAKVDAKTGEISYGFAKYLRDALPNASFIGFTGTPIEAGDVNTPAVFGHYIDIYDISR  468
             GF+AK D K   I YG+AKYLRDALPNA+F+GFTGTP+ + D NT  VFG+YID+YD+++
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  469   AVEDGATVPIYYESRLARIELDEDEKPKidaeieeiledeeepareraKQKWATVEALVG  528
             AV DG+TV IYYESR+  ++L +     +D   ++I ED+EE  ++R K KW+ +EAL G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  529   ADKRLRLIAQDIVQHFEARVAALDGKAMIVCMSRRICVKLYNEIVKLRPGWHSDDDNAGA  588
             A  R+  +A+DI+QHFE+R  A+ GK+MIV MSRRI V LY+EI++L+P WHSDDD+ G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  589   VKIVMTGAASDPPEWQKHIGNKarrdllarrardPKDPLKLVIVRDMWLTGFDAPCMHTM  648
             +K+VMTG++SDP   Q+HIG K RR+LL +R +D  D L+LVIVRDMWLTGFD P MHTM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTM  656

Query  649   YVDKPMRGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKNALAQYSPRDRENTGIDEA  708
             Y+DKPM+GH LMQAIARVNRVF+DKP+GLIVDY+GIA++LK+AL +Y+  D+ +T+ID  
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  709   EAIAVMLEKYEVVRDMFHGFDYRSGLNGSPQERLAMMAGAIEWILERQQQWAAQETTPEG  768
              A+ +ML KY+V++DM+  +DY    ++   ER   ++ +++ ++   ++          
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGED----------  766

Query  769   KKAAHRRFGDavlalskayalasasDPARAIREEVGFFQAIRAALIK-----SSTGSDAN  823
                 ++RF  +V  L+KA+AL ++   A+ + +E++FF+A++A+L+K         +   
Sbjct  767   ---ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKT  823

Query  824   PQAREWAIQQIVSRAVVSTEIVDILTAAGIKSPDISILSDDFLAEVQQMEKKNLALEALR  883
             P   E  I+Q+VS++VV+ +++D+  + G+  PD+SILSDDFL +V+ + +KN+A+E L 
Sbjct  824   PAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLN  883

Query  884   KLINDGIRSRAKANVVQTRAFSQRLEDAVARYHANAITTAEVLQELIHLAKDIRAARQRG  943
             +L+++ ++S  K+N   ++ FS+ L +++ +Y++ +I T+ V++ELI+LAKDI+  +QRG
Sbjct  884   RLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRG  943

Query  944   EESGLSDEEIAFYDALAENESAVQVMGDEKLRVIAHELLVNLRENVSVDWAHRESararl  1003
             +E GL+ +EIAFYDALA +E+A + MGD  LR IAHEL   ++EN++VDW+ R+SA+A++
Sbjct  944   NELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKM  1003

Query  1004  rvlvkrilrkYGYPPDLQDAAVQTVLQQAEALSA  1037
             RV V+R+L+KYGYPPDLQ  AV+ V++QAE ++ 
Sbjct  1004  RVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMAN  1037

62) CJA_3632 in NC_010995


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  833 bits (3154),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 492/1076 (46%), Positives = 769/1076 (72%), Gaps = 53/1076 (4%)

Query  3     KLNESAIEAFAITLLEQQGYTAIHGLDIAPDGDTPERSDYAQVLLTERLDKAIRRINPRL  62
             ++NE  +E  A+  L+  GY    G +I+  + TPER    +V+L ERL+KA+R+IN+ +
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    SEDVLLQARKDVERVQSQDLLANNEAFHRLLTEGVPV-SIQQDGNERGERVWLIDFDRPE  121
                 + +A  ++   +S +LL NN +FH  L +G+ +   +++G+   E V +IDF+ P+
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  122   NNEFAVISQFTVIENHQNKRPDLVLFVNGVPLVVIELKNAGDENASVKSAFKQIETYKAL  181
             NN+F  ++Q+T+++ + +KRPD+VLF+NG+P+VVIELKN+ +E  +V  ++ Q+ETYK  
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  182   IPSLFNSNAFIVISDGLEAKAGSISSGLSRFMHWKTADGKAEASKLVSQLETLIVGMLHP  241
             IP LF  N  +V SDG+++KAGS+++   RFM W++ DG++E+S  ++ L+ LI GML+P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  242   KTLLDLIRHFIVFEKSSKEDPVSGLITINTVKKLAAYHQYYAVNAAVASTLRAADMDGHS  301
              TLLDLIR F++F+  +K          +  K LAAYHQYYAVN AV  +L         
Sbjct  244   ETLLDLIRYFVLFQDDGKG---------HISKILAAYHQYYAVNKAVDRAL---------  285

Query  302   MIHESPASYGLPGVSHQPKGDRKAGVVWHTQGSGKSLSMVFYTGKIVLALNNPTVLVITD  361
                          ++   +GD K+GV+WHTQGSGKSL+MVF++GK++  LNNPT++V+TD
Sbjct  286   -------------LASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTD  332

Query  362   RNDLDDQLFDTFA-----SSKQLLRQEPVQAQDRNHLKELLRVASGGVVFSTIQKFQPED  416
             RNDLD+QL+ TF      S+K LLRQ P QA+ R++LK LL V SGG+VF+T+QKF+PE+
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  417   GNVY-EQLSTRNNIVVIADEAHRTQYGFSAKTVDEKNSSGEVIGKKVVYGFAKYLRDALP  475
              +     L+ R+N++V+ADEAHRTQYGF+AK  D+K       G  + YG+AKYLRDALP
Sbjct  393   NETTMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  476   NATYLGFTGTPIEKADANTPAVFGNYVDIYDIAQAVEDGATVRIFYESRLAKVQLSEEGK  535
             NAT++GFTGTP+  +D NT  VFGNY+D+YD++QAV DG+TV+I+YESR+  ++L+ ++ 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP-QSL  503

Query  536   KLIAELDEELGEMELNETQKAKAKWTKMEALIGSEKRIRNIAKDIVTHFEARQKVFDGKG  595
              L    ++   + E +  Q+ K+KW+++EAL G+  R+  +AKDI+ HFE+RQ+   GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  596   MVVSMSRRIAAELYAEIIKLRPEWYSDDLTKGVIKVVMTAASSDGPLLAKHHTTKEQRKL  655
             M+V+MSRRIA +LY EII+L+PEW SDD  KGVIKVVMT++SSD   + +H   K +R+L
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNL  623

Query  656   LAERMKDDDDPLKLVIVRDMWLTGFDAPGMHTLYIDKPMKGHNLMQAIARVNRVHKDKPG  715
             L  RMKD DD L+LVIVRDMWLTGFD P+MHT+YIDKPMKGHNLMQAIARVNRV KDKPG
Sbjct  624   LEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  716   GLVVDYLGIAADLKEALSFYSEAGGKGDPTLAQEQAVTLMLEKLEVVSALFDGFAYESYF  775
             GL+VDY+GIA  LKEAL  Y+E+ ++++ ++  ++AV LML K +V+  ++  + Y  + 
Sbjct  684   GLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  776   AADTSQKLSMILAAEEHILSL-DDGKKRYIKEVTELSLAYAIAIPHEQAIDVTDEVGFFQ  834
             +   S++   I  + + +++L +D ++R+IK VTEL+ A+A+   +  A ++ DE++FF+
Sbjct  743   SDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFK  802

Query  835   AVKARLVK-FDSTEDGSGN---EDVETTIRQVIDKALVSDKVIDVFDAAGIKKPDISILS  890
             AVKA LVK +++  +G       +VE+ I Q++ +++V++ VIDV+++ G+ +PD+SILS
Sbjct  803   AVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILS  862

Query  891   EEFLAELKDYQHKNIALEVLKKILNDELKIRLKKNLVESKKLIEMLEEAIKKYHNKILTA  950
             ++FL ++ + ++KN+A+E+L+++L++++K  +K N   SK++ EML ++I+KY+++ + +
Sbjct  863   DDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIET  922

Query  951   AEVMDALISISKEITASDETAKQMGLSDFEYAFYTAVADNDSAKELMQQDTLRELAVVLT  1010
             + V++ LI ++K+I   ++ ++++GL+  E AFY A+A +++AKE M +  LR +A  LT
Sbjct  923   SKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELT  982

Query  1011  QRVRENASIDWTIKESVKAKLKVIVKRTLRQFGYPPDMQLLATETVLRQAEIIANE  1066
             + V+EN ++DW+ ++S KAK++V V+R L+++GYPPD+Q +A E V+ QAE++AN+
Sbjct  983   KTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

63) Ppro_1854 in NC_008609


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  832 bits (3151),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 500/1041 (49%), Positives = 773/1041 (75%), Gaps = 26/1041 (2%)

Query  2     TEEHLERETLGWLADTGYSYRYGLDIAPDGPQPERGSYSQVLLVGRLREAINRLNPLVPQ  61
              E++LE+ +L WL   GY Y+ G +I+  +  PER S  +V+L  RL  A+ ++N+ +  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    VAREDALQQVLNLD-TPVLLAANRAFHQLLVNGVPVQ-YQQEGETRGDFVRLMDFGDAGA  119
                E AL++ L L+ +P LL  N +FH+ L+NG+ ++ Y++EG++  ++V+++DF  +  
Sbjct  66    RFIEKALHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  120   NEWLAVNQFSIKGPKFTRRPDIVLFVNGLPLVLLELKNPADEKADIWKAYDQIQTYKEQI  179
             N+ LAVNQ++I    + +RPDIVLF+NGLP+V++ELKN+++E  ++  +Y+Q++TYK +I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   PDVFQYNEILVISDGTEARLGSLSANRERFMAWRTIDGVTLDPLGQFNELETLVRGVLAP  239
             P++F +NE+LV SDG +++ GSL+AN +RFM+WR+ DG T ++   +  L+ L++G+L P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQT-ESSPGLASLDVLIHGMLNP  243

Query  240   DYLLDFLRFFVLFEDDGT--LVKKIAGYHQFHAVRSAIDQVVAASRPGGSRKGGVVWHTQ  297
             + LLD++R+FVLF+DDG   + K +A+YHQ+ AV  A+D+ + AS   G  KGGV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  298   GSGKSITMTCFAARVMREAAMENPTIVVITDRNDLDGQLFGVFSLSQE-----LLREQPV  352
             GSGKS+TM  F++++++   ++NPT+VV+TDRNDLD QL++ F  S+      LLR+ P 
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  353   QGETRQDLRDKLANRPSGGIVFATIQKFMPGEDEDSFPILSDRHNIVVIADEAHRTQYGF  412
             Q+ETR++L+  L+   SGGIVF+T+QKF P ++E + + L++R N++V+ADEAHRTQYGF
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  413   EAKFKGDAKGYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGDYISIYDMQQAR  472
             +AK+ + + G + GYA+ LRDALPNATFV+FTGTPV+S D++T+ VFG+YI +YDM QA 
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  473   DDGATVAIYFESRLAKLGLKTDVLPEIdaevdelaedeeddQQARLKSRWAALEKVVGAE  532
              DG+TV IY+ESR+  L L   +  ++D   ++++ED+E+D + RLKS+W+ +E + GA 
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  533   PRIKQVAADLVAHFEERNQAQSGKAMVVAMSRDICVHLYNAIIALRPEWHDEDPEKGAIK  592
             PR+  +A D++ HFE R+QA  GK+M+V+MSR I V+LY+ II L+PEWH +D +KG IK
Sbjct  539   PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  593   IVMTGSASDKPLLRPHIYAKQTKKRLEKRFKDPDDPLKLVIVRDMWLTGFDAPCAHTMYV  652
             +VMTGS+SD   ++ HI +K+ ++ LEKR KD DD L+LVIVRDMWLTGFD P  HTMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  653   DKPMKGHNLMQAIARVNRVFRDKQGGLVVDYIGIANDLKQALKEYTASKGRGRPTVDARE  712
             DKPMKGHNLMQAIARVNRVF+DK GGL+VDY+GIA+ LK+ALKEYT S ++++ ++D+  
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDK  717

Query  713   AYAVLEEKLDILRAMLHEFDYSGFLTGGHG----LLARTANHVLGL-QDGKKRFGDTALA  767
             A  ++  K D+++ ML ++DYS F ++  +     ++ T + V+GL +D ++RF  T   
Sbjct  718   AVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTE  777

Query  768   MSKAFTLCCTLDEARAVREEVAFFQAVKV----LLTKREISTQRRTDEERELAIRQIIGS  823
             ++KAF+LC T   A+ + +E+AFF+AVK     LL     +  R+T  E E  I Q+++ 
Sbjct  778   LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  824   ALVSEDVVDIFQAVGLDKPNIGILDDEFLNDVRNLPernlavellerllegeirtrFSTN  883
             ++V+EDV+D++Q++GL++P+++IL D+FL+DV  L ++N+AVELL+RLL G++++   TN
Sbjct  838   SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  884   IVQQSRFSELLAKVIARYQNRAIETAQVMEELIAMAKKFRESINRGEELGLNADELAFYD  943
                  RFSE+L++ I +Y++R+IET++V+EELI +AK +++  +RG+ELGLN+DE+AFYD
Sbjct  898   ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYD  957

Query  944   ALANNEEAVREMGDEILKKIAHELAENLRKNISVDWSVRESVRAKLRLMVKRILRKYKYP  1003
             ALA++E A   MGD  L+ IAHEL+  ++ N++VDWS R+S +AK+R+ V+R+L+KY YP
Sbjct  958   ALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYP  1017

Query  1004  PDRQEEAVQLVLDQAETLSAE  1024
             PD Q  AV+ V++QAE ++ +
Sbjct  1018  PDLQKMAVEQVVEQAELMANN  1038

64) TREAZ_2426 in NC_015577


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  832 bits (3149),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 513/1099 (47%), Positives = 771/1099 (71%), Gaps = 69/1099 (6%)

Query  1     MPF-LTESDIEQYALELLEAQGYDCLYGPDIAPGGHNPLRKSFDEVLLFDMLEAAVARIN  59
             M F + E D+EQ ALE L++ GYD   G +I+  +  P RKS  +V+L + LE A+ +IN
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  60    PNLSRELREDAVRQLARLRSADLMVNNETFHRFFTEGVPVTS-VSGGYERGDRVMLVDFE  118
             +++   + E A+++L+  +S++L+ NN TFH  + +G+ +      G    + V ++DFE
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  119   HPETNDFTAVNQFTIIENHINKRPDIILFINGIPLVVIELKNAADENADIASAWKQIQTY  178
              P+ NDF AVNQ+TI++ + +KRPDI+LFING+P+VVIELKN+++E  ++  +  Q++TY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  179   KEAIPSLFTFNSFAIISDGLEARAGTISSGQSRFMAWKSADGRKDASGHTGQIETLIKGM  238
             K  IP LFTFN   + SDG++++AG++++   RFM+W+S DG+ ++S   + ++ LI GM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  239   LNTQTLPDLIRHFIVFEKTRREDSKGITAVETVKKLAAYHQYYAVNKAVESTLRASGYVK  298
             LN +TL DLIR F++F+    +D+KG    +  K LAAYHQYYAVNKAV+ +L AS    
Sbjct  241   LNPETLLDLIRYFVLFQ----DDGKG----HISKILAAYHQYYAVNKAVDRALLAS----  288

Query  299   KSKGIHKGIGAESENAAAEDPESYGLPGVKTQPLRDRKGGVIWHTQGSGKSLSMVFFTGK  358
                              +E+ ++              KGGVIWHTQGSGKSL+MVFF+GK
Sbjct  289   -----------------SEQGDG--------------KGGVIWHTQGSGKSLTMVFFSGK  317

Query  359   IILAMDNPTVVVITDRNDLDDQLFDTF-----SASKQLLRQEPVQAESRGQLKELLKVVS  413
             +I  ++NPT+VV+TDRNDLD+QL+ TF      ++K LLRQ P QAE+R +LK LL V S
Sbjct  318   LIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVES  377

Query  414   GGVVFTTIQKFQPEDGSNLYEELSKRENIIVIADEAHRSQYGFTAKTLDEKNEAGEVIGK  473
             GG+VFTT+QKF+PE+       L+ R N+IV+ADEAHR+QYGF AK  D+K E+      
Sbjct  378   GGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAK-YDDKGEG------  430

Query  474   KTVYGFAKYLRDALPNATYLGFTGTPIESADVNTPAVFGNYVDIYDIAQAVEDGATVRIY  533
                YG+AKYLRDALPNAT++GFTGTP+ S+D NT  VFGNY+D+YD++QAV DG+TV+IY
Sbjct  431   -IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIY  489

Query  534   YETRLAKISLSDEGKRLIQEFDDDLEMTELAETQKAQAKWAQLEALVGSSGRIKKIALDI  593
             YE+R+  ++L+ ++  L + ++D  E  E    Q+ ++KW+++EAL G+  R+  +A DI
Sbjct  490   YESRVIPLNLP-QSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDI  548

Query  594   VTHFEQRQTVLNGKAMIVAMSRRIAAALYEEITVLRPEWHNSDLDKGSIKVVMTSSSSDG  653
             + HFE RQ  ++GK+MIV+MSRRIA  LY+EI  L+PEWH+ D DKG IKVVMT+SSSD 
Sbjct  549   IQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDP  608

Query  654   PEISKHHTTKDQRRKLSDRMKNPHDELRLVIVRDMWLTGFDVPALHTLYIDKPMRGHNLM  713
               + +H   K +R  L  RMK+ +DEL+LVIVRDMWLTGFDVP++HT+YIDKPM+GHNLM
Sbjct  609   TSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLM  668

Query  714   QAIARVNRVYLDKKGGLIVDYLGIASDLKDALSFYSASGGRGDPAETQEQAVSLMLEKLE  773
             QAIARVNRV+ DK GGLIVDY+GIA  LK+AL  Y+ S ++++ A   ++AV LML K +
Sbjct  669   QAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYD  727

Query  774   VVSQLFHGFDYSPYFSAGTGQKLSLILAAEEHILQ-QEDGRRRFLDQVTALSQAFAIAVP  832
             V+ +++  +DYS + S   +++   I  + + ++   ED R+RF+  VT L++AFA+   
Sbjct  728   VIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCAT  787

Query  833   HDKAMDVKDEVAFFQAVKARLAKFDGPASDETVSGKSSGASAQTASSLETAIRQIVDQAL  892
             +  A +++DE+AFF+AVKA L K+  P+ +        G + +T++ +E+ I Q+V Q++
Sbjct  788   EPTAQELNDEIAFFKAVKAGLVKLLQPPKE--------GKTRKTPAEVEAEINQLVSQSV  839

Query  893   VTSRVIDVYEAAGIKKPDISILSEEFLMDVKNMEHKHLAMEVLRKLLADEIRARLKTNLV  952
             VT  VIDVY++ G+ +PD+SILS++FL DV  + +K++A+E+L +LL +++++ +KTN  
Sbjct  840   VTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNAT  899

Query  953   EGKTLMEMLENSIKNYQNKIVTAAEVIDELISLARDIHKRDTAFEELKLTEYEYAFYTAV  1012
              +K + EML NSI++Y+++ + ++ VI+ELI LA+DI + +   +EL L   E AFY A+
Sbjct  900   VSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL  959

Query  1013  ANNESARELMGKEQLRELAVVLYRKVKENASIDWTIREDVRAKLKVTVKRLLREYGYPPD  1072
             A++E+A+E MG  +LR +A  L + VKEN ++DW+ R+  +AK++V+V+RLL+ YGYPPD
Sbjct  960   ASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPD  1019

Query  1073  MEALATETVLQQAEKIADE  1091
             ++ +A E V++QAE +A++
Sbjct  1020  LQKMAVEQVVEQAELMANN  1038

65) hsdR in NC_012796


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  831 bits (3147),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/1055 (48%), Positives = 770/1055 (73%), Gaps = 29/1055 (2%)

Query  1     MAF-ISEADVEGVLLETLGSLGYAATSDLQIGPDGHAPEREAYSDVFLQKRLEAAVEALN  59
             M F ++E D+E V LE L SLGY    + +I+  + +PER +  DV L+ RLE A+  +N
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  60    PHIPAEARHDAIRALIATEFPNLTEENRRLHRMMVEGVDVEFPRDDGSIAGDKVRLIDFD  119
             ++I +   + A++ L     PNL E+N  +H  +++G+++E   D+G    + V++IDF+
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  120   TPDNNDWLAVNQFTVIEGKINRRPDVVVFVNGLPLGVIELKNPGTENADLEAAFNQLQTY  179
              P+NND LAVNQ+T+++G  ++RPD+V+F+NGLP+ VIELKN+  E  ++E +++QL+TY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KTQVTSLFRTNAVLVTSDGLQARIGSLTANQERFMPWRTTDGKEVAKKGLPELHVLIEGV  239
             K ++  LF  N VLVTSDG++++ GSLTAN +RFM WR+ DG+  +  GL+ L+VLI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  240   FEKRRFLDLIRDFTVFGETGSG-IAKIIAGYHQYHAVRHAVAHTVKAAAPKGDRRAGVIW  298
             ++   +LDLIR F +F + G G I+KI+A+YHQY AV  AV +++ A++ +GD ++GVIW
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  299   HTQGSGKSLLMAFYAGQLVRCPELENPTIVVITDRNDLDDQLFNTFSMCRD-----LIRQ  353
             HTQGSGKSL M F++G+L++   L+NPT+VV+TDRNDLD+QL++TF   ++     L+RQ
Sbjct  301   HTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   TPIQATNREDLRKALNRASGGVIFTTIQKFTPEKGDSEYPLLTDRRNVVVIADEAHRSQY  413
             TP QA  R +L+  L+  SGG++FTT+QKF PE+ ++  + LT+R+NV+V+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQY  418

Query  414   GFKAKVAQKTGEIAYGFAKYLRDGLPNASFIGFTGTPIEKDDVNTPAVFGHYIDIYDISR  473
             GF+AK  +K   I YG+AKYLRD+LPNA+F+GFTGTP+   D NT  VFG+YID+YD+++
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  474   AVEDGATVPLYYESRLARIELSAeekpkideeieelteddAVSEQEALKRKWATVEALVG  533
             AV DG+TV +YYESR+  ++L+         +     +++ V ++  LK KW+ +EAL G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQR--LKSKWSRIEALAG  536

Query  534   AEKRLKLIAQDLVRHFEDRVAAMDGKAMVVCMSRRICVALYNEIVALRPAWHSDDDNEGV  593
             A  R+  +A+D+++HFE R  AM GK+M+V MSRRI V LY+EI+ L+P WHSDDD+ GV
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  594   VKVVMTGSASDPADWQPHVGNkarrellakrakapkDTLKLVLVRDMWLTGFDAPSMHTM  653
             +KVVMTGS+SDP+  Q H+G K RR+LL KR K   D L+LV+VRDMWLTGFD PSMHTM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTM  656

Query  654   YVDKPMKGHGLMQAIARVNRVFRDKPAGLVVDYIGIGQSLKNALGQYSASDRSQAGIDEG  713
             Y+DKPMKGH LMQAIARVNRVF+DKP+GL+VDY+GI++SLK+AL +Y+ SD++Q++ID +
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  714   KAVAVMMEKFEIVTAMFHGFDYQRAMTGTAHDRLMVMAEALDWILEQQHKAAEKETDDGK  773
             KAV +M+ K++++  M+  +DY +  ++   +R   +++++D ++             G 
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVI-------------GL  763

Query  774   KKEAHRRFQDavlalskafalaaasdearsIRDEVAFFQTIRAALtk-----tgigggkt  828
               + ++RF  +V  L+KAFAL A+   A+ + DE+AFF++++A+L K           KT
Sbjct  764   GEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKT  823

Query  829   tAEREFAVQQLINRAVASTEIVDILAAAGLNTPDISILSDEFLVEVQQMekknlalealk  888
              AE E  ++QL++++V + +++D+  + GL+ PD+SILSD+FL +V+ + +KN+A+E L+
Sbjct  824   PAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLN  883

Query  889   kllnGEIHSRTRTNVVETKKFSERLEKAIARYHTNAVSTVEVIQELINLAKDIREARLRG  948
             +LL+G++ S  +TN   +K+FSE L ++I +Y++ ++ T  VI+ELI+LAKDI++ + RG
Sbjct  884   RLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRG  943

Query  949   EALGLSQDEIAFYDALAENQSAVDVMGDASLRVIAHELLTSLKGSITVDWAHRESARARM  1008
             + LGL+ DEIAFYDALA +++A + MGD  LR IAHEL  ++K ++ VDW+ R+SA+A+M
Sbjct  944   NELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKM  1003

Query  1009  RVLVKRILKRHGYPPDLQDAAIQVVLQQAEALSAQ  1043
             RV V+R+LK+ GYPPDLQ  A++ V++QAE ++ +
Sbjct  1004  RVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

66) A458_03965 in NC_018028


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  831 bits (3145),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 497/1047 (48%), Positives = 759/1047 (73%), Gaps = 31/1047 (2%)

Query  2     TEDQLEQECLGWLGELGYTHLYGPDIAHDGGDPQRDSYRQVVLTERLRAAIAKLNPQVPL  61
              ED+LEQ  L WL  LGY    G +I+  +  P+R S ++VVL ERL  A+ K+N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDALKQVVDLGVPAQLSANRLFHRLLVGGVPVQ-YQLDGETRGDFVRLIDWVNVRGN  120
                E AL ++     P  L  N  FH  L+ G+ ++ Y+ +G++  ++V++ID    + N
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  121   EWLAINQFSIQGPKHTRRPDIILFVNGLPLVLLELKNPADVNADLWKAFDQLQTYKEQIP  180
             + LA+NQ++I      +RPDI+LF+NGLP+V++ELKN+++   ++  +++QL+TYK +IP
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DLFHYNEILVISDGSEARMGSLSADAERFMNWRTIDGEQLDPLGQFNELETLLRGVMAPE  240
             +LF +NE+LV SDG +++ GSL+A+ +RFM WR+ DG Q ++   +  L+ L++G++ PE
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG-QTESSPGLASLDVLIHGMLNPE  244

Query  241   MLLDYLRYFVLFEDDGR--LVKKIAGYHQFHAVRAAIRQVVTASRPGGTHKGGVVWHTQG  298
              LLD +RYFVLF+DDG+  + K +A+YHQ+ AV  A+ + + AS   G  KGGV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQG  304

Query  299   SGKSITMTCFAARVMQAAAMENPTIVVITDRNDLDGQLFGVFSLSHD-----LLREQPVQ  353
             SGKS+TM  F+++++Q   ++NPT+VV+TDRNDLD QL++ F  S +     LLR+ P Q
Sbjct  305   SGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  354   AETRGDLREKLGNRPSGGIVFATIQKFMPGEDEDSFPVLSTRSNIVVIADEAHRTQYGFH  413
             AETR +L+  L+   SGGIVF+T+QKF P ++E + + L+ R N++V+ADEAHRTQYGF+
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFN  421

Query  414   ASLKAPDLKVAEASARYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGDYIHVY  473
             A     +      + +Y  GYA+ LRDALPNATFV+FTGTPV+S D++T+ VFG+YI+VY
Sbjct  422   AKYDDKG-----EGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVY  474

Query  474   DMQQAKDDGATVAIYYESRLAKLSLKDSELAHIddevdelaedeeedQQSRLKSRWAALE  533
             DM QA  DG+TV IYYESR+  L+L +S   ++D+  ++++ED+EED + RLKS+W+ +E
Sbjct  475   DMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIE  532

Query  534   KVVGAEPRIKSVAADLVAHFEERNQAQSGKAMIVAMSREICVHLYNEIVALRPEWHDEDP  593
              + GA PR+ ++A D++ HFE R+QA  GK+MIV+MSR I V+LY+EI+ L+PEWH +D 
Sbjct  533   ALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD  592

Query  594   EQGAIKVVMTGSASDKALLRPHIYPSQVKKRLEKRFKDPKDPLQLVIVRDMWLTGFDAPC  653
             ++G IKVVMTGS+SD + ++ HI P + ++ LEKR KD  D LQLVIVRDMWLTGFD P 
Sbjct  593   DKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPS  652

Query  654   VHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKAALKEYTASKGRGRP  713
             +HT+Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GIA+ LK ALKEYT S ++++ 
Sbjct  653   MHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQT  711

Query  714   TVDAHEAYSVLEEKLDVLRSLLHGFDYSDYLTGGHK----LLAGAANHVLGL-EDGKKRF  768
             ++D++ A  ++  K DV++ +L  +DYS + ++        ++ + + V+GL ED ++RF
Sbjct  712   AIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRF  771

Query  769   ADNALAMSKAFTLCCTLDEAKAVREEVAFLQAIKV----LLTKREISAKKKSDEERELAI  824
                   ++KAF+LC T   A+ + +E+AF++A+K     LL     +  +K+  E E  I
Sbjct  772   IKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI  831

Query  825   RQIIGNAVVSGEVVDVFEAVGLDKPNIGLLDDEFLAEVRNLPERNLAVELLERLLEGEIK  884
              Q+++++VV+ +V+DV++++GL++P++++L D+FL +V  L ++N+AVELL+RLL G++K
Sbjct  832   NQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVK  891

Query  885   SKFASNLAQEKKFSELLDNVIKRYQNRSIETAQVIEELIEMAKKFAAASKRGDELGLNDD  944
             S   +N +  K+FSE+L+N I++Y++RSIET++VIEELI++AK +    +RG+ELGLN D
Sbjct  892   SLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSD  951

Query  945   ELAFYDALANNEASVRELGDEILAKIAHELTASLRQNVTVDWSNRDSVRAKLRLMVKRIL  1004
             E+AFYDALA++E++   +GD  L  IAHELT ++++N+ VDWS+RDS +AK+R+ V+R+L
Sbjct  952   EIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLL  1011

Query  1005  RKYKYPPDQQEGAAQLILEQAEMLCAG  1031
             +KY YPPD Q  A + ++EQAE++   
Sbjct  1012  KKYGYPPDLQKMAVEQVVEQAELMANN  1038

67) PP1Y_AT2851 in NC_015580


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  831 bits (3145),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 491/1049 (47%), Positives = 755/1049 (72%), Gaps = 28/1049 (2%)

Query  3     KFSEDIVELASIEILQDLGWNYLHGSVIAPDGVAAERQAFSDVILLPRLEKAVADLNPTL  62
             +F+ED +E  ++E LQ LG +Y  G+ I+  ++++ER++  DV+L  RLEKA+  +N+ +
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    PeaaraeairrLLTSETGSLVEENRRIHRLLTDGVPVEYRNTDGRIVGDKVWLLDLDKVE  122
                    A++ L    + +L+E+N  +H  L +G+ +E  + +G+ + + V ++D++  +
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  123   SNDWLVVNQFTVVEGSQNRRPDVILFVNGLPLAVLELKNAAAENATISDAFHQLQTYLAQ  182
             +ND L VNQ+T+V+G  ++RPD++LF+NGLP+ V+ELKN++ E   + D++HQL+TY  +
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  183   IPSLFRTNAVLITSDGIEARIGSLAADQERFMPWRTVTGEDFAHRGQPELETLLRGVFTR  242
             IP LF  N VL+TSDGI+++ GSL+A+ +RFM WR+  G+  +  G + L+ L++G++  
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  243   ANILALIRDFIVFGDAGAGPF-KIIAGYHQFHGARKAIREAVDASSPLGDRKIGVIWHTQ  301
               +L LIR F++F D G G + KI+A+YHQ+ +  KA+  A+ ASS  GD K GVIWHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  302   GSGKSFLMAFFAGLAVKSPELSNPTIVVLTDRNDLDDQLASTFSLCKD-----LLRQNPE  356
             GSGKS+ M FF+G  ++   L+NPT+VV+TDRNDLD+QL STF   K+     LLRQ P 
Sbjct  304   GSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  357   QAESREDLQRLLARASGGVIFTTIQKFSPERGEESFPMLTDRRNVIVMADEAHRSQYGFD  416
             QAE+R +L+ LL+  SGG++FTT+QKF PE+ E + + LT+R+NVIVMADEAHR+QYGF+
Sbjct  362   QAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFN  421

Query  417   AKLDVKTGARRYGYAHYIRQAMPNASFIGFTGTPIEAADVNTPAIFGRYIDIYDISRAVE  476
             AK D K  + +YGYA Y+R+A+PNA+F+GFTGTP+ ++D NT  +FG YID+YD+++AV 
Sbjct  422   AKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  477   DGATVPIYYESRLARIELDEDEKPLIDAEIEALVEDDTLTEAEKAKAKWSTVEALVGSDK  536
             DG+TV IYYESR+  ++L +     +D   + + ED+     ++ K+KWS +EAL G+  
Sbjct  482   DGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  537   RLKQIAADMVTHLEARTDGTEYKGMAVCMSRRICVALYNEIIALRPDWHSDDDADGVIKI  596
             R+  +A D++ H+E+R ++   KGM V MSRRI V LY+EII L+P+WHSDDD  GVIK+
Sbjct  540   RVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  597   VMTGAASDPLSWQQHIGNKRRRDGLAKRARDPKDPLRLVLVRDMWLTGFDAPCMNTMYVD  656
             VMTG++SDP S Q+HIG K+RR+ L KR +D  D L+LV+VRDMWLTGFD P M+TMY+D
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  657   KPMRGHGLMQAIARVNRVFRDKPGGLIVDYIGIAQNLKKALSDYTDSDQEKTGIDEADAV  716
             KPM+GH LMQAIARVNRVF+DKPGGLIVDY+GIA++LK AL +YT+SDQ +T+ID   AV
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAV  719

Query  717   AALLERYEIVSGIFHGFDYLPGIHGAPMERLQCLAGAIDWVLKWAEIEAGKAQSPEDKKK  776
               +L +Y+++ +++  +DY     +   ER   ++ ++D V+  +E E            
Sbjct  720   ELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDE------------  767

Query  777   AHRRYLDLVLELTKAYALASASDEAREIRDEIGFFQAVRAAIAKSTATGKLSQADKTFA-  835
              ++R++  V EL KA+AL ++   A+E+ DEI+FF+AV+A++ K     K +++ KT A 
Sbjct  768   -RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAE  826

Query  836   ----VQQLIDRAVASAEIVDILKVAGIDSPDISILSEEFLLEIQGMekknlalealkkll  891
                 ++QL+ ++V + +++D+ +  G++ PD+SILS++FL +++G+ +KN+A+E L++LL
Sbjct  827   VEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLL  886

Query  892   ageITSRMRTNVVESRAFSRRLEDAVARYHAGALSAAEMINELIALAKDMKAAQRRGEDQ  951
              G++ S M+TN   S+ FS  L +++ +Y++ ++ ++ +I+ELI LAKD+K  Q+RG++ 
Sbjct  887   KGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNEL  946

Query  952   GLSPEEIAFYDALAENESAVEAMGSEQLRLIAHELLEQLRQNVTVDWHHRESARARMRVL  1011
             GL+++EIAFYDALA +E+A EAMG  +LR IAHEL   +++N+ VDW  R+SA+A+MRV 
Sbjct  947   GLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVA  1006

Query  1012  VKRILKRYGYPPDLADEAVQTVLAQAEVL  1040
             V+R+LK+YGYPPDL   AV+ V+ QAE++
Sbjct  1007  VRRLLKKYGYPPDLQKMAVEQVVEQAELM  1035

68) CAP2UW1_1871 in NC_013194


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  830 bits (3141),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/1067 (47%), Positives = 767/1067 (72%), Gaps = 52/1067 (4%)

Query  2     TEDHLEQEALGWLTEVGYDTLYGPDIAPDGANPERAGYQQVLLPFRLREAIHRLNPSIPL  61
              ED+LEQ AL WL  +GYD   G +I+  +  PER + ++V+L  RL  A++++N+ I  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDALKQVLDLG-IPALLSANRHFHKLLVGGVPVQ-YQKDGETRGDLVRLIDWTNPAK  119
                E AL + L L   P LL  N  FH  L+ G+ ++ Y+ +G++  ++V++ID   P +
Sbjct  66    RFIEKALHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  120   NKWLAINQHSIKGPHHTRRPDIILFINGLPLVLIELKNPADGNADIWRAYDQLQTYKEQI  179
             N  LA+NQ +I   +  +RPDI+LFINGLP+V+IELKN+++   ++  +Y+QL+TYK +I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   PDAFQYNEVLIISDGSEARFGSLSANAERFMQWRTIDGVALDPLGEFNELETLVRGLLAP  239
             P+ F +NEVL+ SDG +++ GSL+AN +RFM WR+ DG + ++   +  L+ L++G+L P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQT-ESSPGLASLDVLIHGMLNP  243

Query  240   AILLDYLRFFVLFEDDGA--LVKKIAGYHQFHAVRAAIDQVVTASRPGGTHKGGVVWHTQ  297
               LLD +R+FVLF+DDG   + K +A+YHQ+ AV  A+D+ + AS   G  KGGV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  298   GSGKSITMTCFAARVMQEAVMENPTIVVITDRNDLDGQLFGVF-----SLAQDLLREEPV  352
             GSGKS+TM  F+++++Q  +++NPT+VV+TDRNDLD QL++ F       +++LLR+ P 
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  353   QANTRQDLRAKLGNRPSGGIVFATIQKFMPGEDEDAYPTLSDRHNIVVIADEAHRTQYGF  412
             QA+TR++L++ L+   SGGIVF+T+QKF P ++E + ++L++R N++V+ADEAHRTQYGF
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  413   EARLKTVRAPRNTAGDGVNDANARLAAEPAASYLSRYQVGYAQHLRDALPNATFVAFTGT  472
             +A+        +  G+G+                 +Y  GYA+ LRDALPNATFV+FTGT
Sbjct  421   NAKY-------DDKGEGI-----------------KY--GYAKYLRDALPNATFVGFTGT  454

Query  473   PVSSEDRDTRAVFGDYIHVYDMQQAKEDGATVAIYFESRLAKLSLNEAELPHIddevdel  532
             PV+S D++T+ VFG+YI+VYDM QA  DG+TV IY+ESR+  L+L ++   ++D+  +++
Sbjct  455   PVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDI  512

Query  533   aedeeeGQQARLKSKWAALEKVVGAEPRIASVAADLVAHFEERSQAQTGKAMVVAMSREI  592
             +ED+EE+ + RLKSKW+ +E + GA PR+ ++A D++ HFE R QA  GK+M+V+MSR I
Sbjct  513   TEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRI  572

Query  593   CVHLYNEITRLRPEWHDADPEKGAIKIVMTGSASDKALLRPHIYSAQVKKRLEKRFKDPA  652
              V+LY+EI RL+PEWH  D +KG IK+VMTGS+SD + ++ HI + + ++ LEKR KD  
Sbjct  573   AVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVD  632

Query  653   DPLRIVIVRDMWLTGFDAPCVHTMYIDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGI  712
             D L++VIVRDMWLTGFD P +HTMYIDKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GI
Sbjct  633   DELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGI  692

Query  713   ANELKSALKEYTASQGRGRPTVDVAEAYAVLEEKLDILRGMLHGFDYSDFLT--TGHR--  768
             A+ LK ALKEYT S+ +++ ++D   A  ++  K D++++ML  +DYS F +   ++R  
Sbjct  693   AESLKEALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYY  751

Query  769   RLAGAANHVLG-QKDGKKRFADTALAMSRAFTLCCTLDAAKEVREEVAFMQAVKVILTK-  826
              ++ + + V+G   D ++RF  T   +++AF+LC T  +A+E+ +E+AF +AVK  L K 
Sbjct  752   TISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKL  811

Query  827   ---RDLSQQRRTDEQRELAIRQIINSAIVSEEVVDVFDAVGLDKPNIGILDDAFLAEVRN  883
                   ++ R+T  + E  I Q+++ ++V+E+V+DV++++GL++P+++IL D FL +V  
Sbjct  812   LQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEG  871

Query  884   LPERNLAVELLERLLEGEIKSRFAGNVVQAKKFSELLTNVIKRYQNRAIETAQVIEELIE  943
             L ++N+AVELL+RLL G++KS    N   +K+FSE+L N I++Y++R+IET++VIEELI+
Sbjct  872   LKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQ  931

Query  944   MAKKFRAAANRGEALGLTEDEVRFYDALADNESAVRELSDETLKKIAHELTESLRQNITV  1003
             +AK ++   +RG+ LGL  DE+ FYDALA +E+A   ++D  L+ IAHELT ++++N+ V
Sbjct  932   LAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGV  991

Query  1004  DWSARDSIRARLRLMVKRILRKYKYPPDQQEAAIELVLKQAEVLGEE  1050
             DWS RDS +A++R+ V+R+L+KY YPPD Q  A+E V+ QAE+++++
Sbjct  992   DWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

69) Ngar_c29150 in NC_018719


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  829 bits (3137),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 495/1041 (48%), Positives = 785/1041 (76%), Gaps = 24/1041 (2%)

Query  6     SEADVEENVLAILESMGYKIIRGDNEDCLPGGSSALRADYKDVVLVDRLTDSLRKINPSA  65
             +E D+E+  L  L+S+GY   +G NE  + + ++  ++D KDVVL +RL  +LRKIN+  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKG-NEISMTSLTPERKSD-KDVVLHERLEKALRKINSDI  63

Query  66    PIDALDQAIKQVLRSESQKLIANNESFHKMLVDGIDIPVQTLEGETYKKI-WLFDFEDPE  124
                 +++A+ ++    S +L+ NN +FH  L++GI+I     EG++   I  ++DFE P+
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  125   NNEFLAVNQFTVVENNIERRPDVILFVNGIPLLVIELKNLADENATIWTAYDQLQTYKEQ  184
             NN+FLAVNQ+T+V+ +  +RPD++LF+NG+P++VIELKN ++E   +  +Y+QL+TYK +
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  185   LPSLFKYNEILVISDGIEARAGTLTSERERFAQWKTIDG-GAPRKGLTEIEVLIRGMCNK  243
             +P LF +NE+LV SDGI+++AG+LT++ +RF  W++ DG   +  GL+ ++VLI+GM N 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  244   QRFLDIVRNFIVFEKDK--SVSKKLAAYHQYWAVNKALESTI--KARKGNKKAGIVWHTQ  299
             + +LD++R F++F+ D    +SK LAAYHQY AVNKA++ ++   + +G+ K+G++WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  300   GSGKSLTMVFYTGKLVRELDNPTVVVLTDRNDLDDQLFGTFSRCQD-----IIRQEPQQA  354
             GSGKSLTMVF++GKL++ L+NPT+VV+TDRNDLD+QL++TF + ++     ++RQ P+QA
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  355   NSRKELQDLLKVSSGGIVFTTIQKFLPEEDNREKYPVLSERDNIVVIADEAHRSQYGFAA  414
             ++RKEL+ LL V SGGIVFTT+QKF PE+++    + L+ER N++V+ADEAHR+QYGF A
Sbjct  364   ETRKELKSLLSVESGGIVFTTMQKFEPEQNETTM-AALTERKNVIVMADEAHRTQYGFNA  422

Query  415   KILNKDDKTLITYGYAKYLRDALPNASFIGFTGTPIEKADRSTPAVFGKYVDTYDIEQAV  474
             K  +K++   I YGYAKYLRDALPNA+F+GFTGTP+  +D++T  VFG+Y+D YD+ QAV
Sbjct  423   KYDDKGEG--IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  475   NDGATVRIYYESRLAKLELKPEERPKIDSefeevtegeevegkekLKSKWARVEKVAGAP  534
              DG+TV+IYYESR+  L+L   +   +D  ++++TE++E + K++LKSKW+R+E +AGA 
Sbjct  481   ADGSTVKIYYESRVIPLNL--PQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  535   MRIKRIAKDIVDHFEKRTSVLEGKGMIVCMSRRICVELYNEIVELRPEWKNSDDEKGAIK  594
              R+  +AKDI++HFE R   + GKGMIV MSRRI V+LY+EI+ L+PEW + DD+KG IK
Sbjct  539   PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  595   VVMTGSASDPKEWQEHIRNKIRRKRIGDNFKDPKHELRLIIVRDMFLTGYDAPSLHTMYL  654
             VVMTGS+SDP   Q HI  K RR+ +    KD  +EL+L+IVRDM LTG+D PS+HTMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  655   DKPMKGHTLMQAIARVNRVYPGKEGGLIVDYMGVGAELKKALMDYTASGGKGKPAFDQek  714
             DKPMKGH LMQAIARVNRV+ +K GGLIVDY+G++  LK AL +YT S ++++ A+D +K
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDK  717

Query  715   avmmmvekyevvkDMFHGFNYRKFFELKPSERISFIPQAMEHILK-EPGKKERYAREVTA  773
             AV +M+ KY+V++DM+  ++Y KF   K SER   I+++M+ ++    + ++R+ + VT 
Sbjct  718   AVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTE  777

Query  774   LLKAFSLAVPHDRAMKIKEEVGLFQAIKSAIAKTTETGKESQEEK----FDSAIKQILSK  829
             L KAF+L   +  A  +++E+++F+A+K+++ K  +  KE++  K     ++ I+Q++S+
Sbjct  778   LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  830   AVISDRIIDIFEAAGIQKPELSILSDGFLAEVKDMPQKNLAFEALKKLLNDEIRFMSKRN  889
             +V+++ +ID++++ G+++P+LSILSD+FL +V ++ QKN+A E L++LL+++++ + K N
Sbjct  838   SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  890   LVQAKSFMEMLDKTIKKYTNRNVEAAQVIEELIELAKKVRAEKNRAKEQNMSEDELAFYD  949
                +K F EML+++I+KY +R++E+++VIEELI+LAK ++ E++R++E  ++ DE+AFYD
Sbjct  898   ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYD  957

Query  950   ALEVNDSAVKILGDETLRKIAVELTQMIRNSVTIDWTQRESVQAAIRLNVKKILRKYGYP  1009
             AL  +++A   +GD  LR IA ELT+ +++++ +DW++R+S +A +R+ V+++L+KYGYP
Sbjct  958   ALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYP  1017

Query  1010  PDKEKKATETVLRQAELVAKN  1030
             PD +K A E V+ QAEL+A+N
Sbjct  1018  PDLQKMAVEQVVEQAELMANN  1038

70) MmTuc01_2253 in NC_020389


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  829 bits (3137),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 503/1074 (47%), Positives = 758/1074 (71%), Gaps = 80/1074 (7%)

Query  15    AIELLERQGYQYIYAPDIAPDSDTPERDRFEDVLLLERLRKAIGRINPDIPADAREDAIR  74
             A+E L+  GY+Y  + +I+  S TPER    DV+L ERL KA+ +IN+DI +   E A++
Sbjct  14    ALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALH  73

Query  75    QVRRLNSPELISNNEAFHKMLTEGINV-SYRKDGADRGDLVWLVDFKDPENNDFLVANQF  133
             ++   +SP+L+ NN +FH  L +GI++  Y  +G    ++V ++DF  P+NNDFL  NQ+
Sbjct  74    ELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQL  133

Query  134   TVVENDKNKRPDIILFVNGLPLVVIELKNPADENATVRSAFRQFQTYKQTIPSLFAYNGF  193
             T+V+ D +KRPDI+LF+NGLP+VVIELKN+++E   V  +++Q++TYK  IP LF++N  
Sbjct  134   TIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEV  193

Query  194   MVISDGLEARSGSLSAGFTRFMAWKSSDGRGEASPLIGQLETLIKGMLEKTTLLDILRHF  253
             +V SDG+++++GSL+A + RFM+W+S DG+ E+SP ++ L+ LI GML+  TLLD++R F
Sbjct  194   LVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYF  253

Query  254   IVFEKSKKEDSATGIITIQTVKKLASYHQYYAVNRAVESTLRASGYAAKENWDWDTLGIH  313
             ++F+   K          +  K LA+YHQYYAVN+AV+ +L AS+               
Sbjct  254   VLFQDDGKG---------HISKILAAYHQYYAVNKAVDRALLASS---------------  289

Query  314   YESPENYGLPGVKKQPVGDRKGGVIWHTQGSGKSLTMVFYTGKIVLAMDNPTLVVITDRN  373
                              GD KGGVIWHTQGSGKSLTMVF++GK++  ++NPTLVV+TDRN
Sbjct  290   ---------------EQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRN  334

Query  374   DLDDQLFDTFA-----ASKQLLRQEPVQAENRDHLKQLLNVASGGIVFTTIQKFQPEEGN  428
             DLD+QL+ TF      ++K LLRQ P QAE R +LK LL+V SGGIVFTT+QKF+PE+ +
Sbjct  335   DLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNE  394

Query  429   VY-PKLSDRKNIIVIADEAHRTQYGFKAKNVDVKDEQGNVIGKKIVYGFAKYTRDV----  483
                + L++RKN+IV+ADEAHRTQYGF+AK     D++G+ I     YG+AKY RD     
Sbjct  395   TTMAALTERKNVIVMADEAHRTQYGFNAKY----DDKGEGIK----YGYAKYLRDALPNA  446

Query  484   ---------------NTPVVFGNYVDIYDISQSVEDGATVKIYYESRLAKVTLSNEGkkl  528
                            NT +VFGNY+D+YD++Q+V DG+TVKIYYESR+  + L+ ++  L
Sbjct  447   TFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP-QSLDL  505

Query  529   vaeldeeldkedlaeTQKIKAKWTQLEALIGSEARIKQIAKDIVTHFEQRQEVFEGKGMI  588
                 ++  + ++    Q++K+KW+++EAL G+ +R+  +AKDI+ HFE RQ+   GKGMI
Sbjct  506   DEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMI  565

Query  589   VAMSRRIAADLYDEVIKIKPEWHSDDLRKGAIKVVMTSASSEGPKISKHHTTKDQRRILA  648
             V+MSRRIA DLYDE+I++KPEWHSDD  KG IKVVMT++SS+   + +H   K +R +L 
Sbjct  566   VTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLE  625

Query  649   ERMKNPEDELKLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVNRVYKDKPGSL  708
              RMK+ +DEL+LVIVRDMWLTGFDVP +HTMYIDKPMKGH LMQAIARVNRV+KDKPG+L
Sbjct  626   KRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGL  685

Query  709   IVDYLGIASDLKEALSFYSDSGGKGDPAVLQEKAVQLMLEKLEIVSQMFHGFTFDDYFEA  768
             IVDY+GIA  LKEAL  Y++S ++++ A+  +KAV+LML K +++ +M+  + +  +   
Sbjct  686   IVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSD  744

Query  769   DTSRKLSIILEAEEHILGL-ENGKKRYIDEVTALSKAFSLAIPHEQAMDVKDEISFYQAV  827
               S +   I ++ + ++GL E+ ++R+I  VT L+KAF+L   +  A +++DEI+F++AV
Sbjct  745   KKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAV  804

Query  828   KARLVKF----DGTGTGKTDEDIETAIRQVIDKALVTEQVIDVFDAAGIKKPDISILSED  883
             KA LVK+        T KT  ++E+ I Q++ +++VTE+VIDV+++ G+ +PD+SILS+D
Sbjct  805   KAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDD  864

Query  884   FLLEVRNMEHKNLALEVLKKLLNDEIRARIKKNLIQSRSLMEMLENSITRYHNKVLTAAE  943
             FL +V  + +KN+A+E+L++LL++++++ +K N   S+ + EML NSI +Y+++ + ++ 
Sbjct  865   FLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSK  924

Query  944   VIEELIKLSKEIKRMDKEPQEMGLSEFEYAFYTAIADNESAREVMQKEKLRELAVVLFEK  1003
             VIEELI+L+K+IK+ ++  +E+GL+  E AFY A+A +E+A+E M    LR +A  L   
Sbjct  925   VIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKT  984

Query  1004  VKQNASIDWTIKESVRAKLKVIVKRTLRQYGYPPDMQALATETVLKQAELIADE  1057
             VK+N ++DW+ ++S +AK++V V+R L++YGYPPD+Q +A E V+ QAEL+A++
Sbjct  985   VKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

71) Pnap_4782 in NC_008761


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  828 bits (3136),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/1025 (48%), Positives = 752/1025 (74%), Gaps = 30/1025 (2%)

Query  2     TEDQLEQETLAWLQDVGYTCHCGYDIAPDGPAPERSSFSQALLPFRLREAIHKLNPGIPT  61
              ED+LEQ +L WLQ +GY    G +I+  + +PER S  + +L  RL  A++K+N++I  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    PAREDAFKQVLDLG-IPALLSANRHFHKLLVGGVPVE-YQKDGQTRGDFVRLIDWAQPAR  119
                E A+ + L L   P LL  N  FH  L+ G+ +E Y+ +GQ+  ++V++ID   P  
Sbjct  66    RFIEKALHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  120   NEFLAVNQFSLKGAHHTRRPDIILFVNGLPLVLLELKNPADLNANVWKAYDQIQTYKAQI  179
             N+FLAVNQ+++  ++  +RPDI+LF+NGLP+V++ELKN+++    V  +Y+Q++TYK +I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   PGVFEYNEVLVISDGTEAllgslssssERFMAWRTIDGQALDPLGQFNELQTLVRGVLAP  239
             P +F +NEVLV SDG ++  GSL+++ +RFM+WR+ DGQ+ ++   +  L+ L++G+L P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQT-ESSPGLASLDVLIHGMLNP  243

Query  240   AYLLDYLRYFVLFEDDG--QLAKKIAGYHQFHAVRSAITQVVTASRPGGTHKGGVVWHTQ  297
               LLD +RYFVLF+DDG  +++K +A+YHQ+ AV  A+ + + AS   G  KGGV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  298   GSGKSITMTCFAARVMQEPAMENPTIVVITDRNDLDGQLFGVF-----SLAQDLLREQPV  352
             GSGKS+TM  F+++++Q   ++NPT+VV+TDRNDLD QL++ F       +++LLR+ P 
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  353   QVSTRQDLRTRLANRPSGGIVFATIQKFMPGEDEDTFPTLSERHNIVVIADEAHRTQYGF  412
             Q  TR++L++ L+   SGGIVF+T+QKF P ++E T ++L+ER N++V+ADEAHRTQYGF
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  413   EAKLKGKPGHETYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGDYISVYDMQQ  472
             +AK  +K     Y  GYA+ LRDALPNATFV+FTGTPV+S D++T+ VFG+YI VYDM Q
Sbjct  421   NAKYDDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  473   AKEDGATVAIYYESRLAKLKLKEEDFSLIdeevdelaedeeeSTQAKLKSRWAALEKVVG  532
             A  DG+TV IYYESR+  L+L  + + L DE  ++++ED+EE  + +LKS+W+ +E + G
Sbjct  479   AVADGSTVKIYYESRVIPLNL-PQSLDL-DEAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  533   AEPRVASVAADLVAHFEERNKAQSGKAMTVAMSRDICVHLYNEIVKLRPDWHDPDPEKGA  592
             A PRV ++A D++ HFE R++A  GK+M V+MSR I V+LY+EI++L+P+WH  D +KG 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  593   IKIVMTGSSSDKALLRPHIYSAQVKKRLEKRFKDPADPLRLVIVRDMWLTGFDAPCVHTL  652
             IK+VMTGSSSD + ++ HI + + ++ LEKR KD  D L+LVIVRDMWLTGFD P +HT+
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTM  656

Query  653   YVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIGNELKAAMKEYTQSKGRGRPTVDA  712
             Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GI++ LK A+KEYT+S ++++ ++D+
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDT  715

Query  713   HEAYSVLAEKLDILQTMLHGYDYSGFLTGGHK----ALAGAANHVLG-AQDGKKRFADTA  767
             + A  ++  K D++Q ML   DYS F ++       +++ + + V+G ++D ++RF  T 
Sbjct  716   DKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTV  775

Query  768   LQMSKAFSLCCTLDEAKAVREEVAFLQGVKVILTK-----KDLSAQKKTDEQRDLAIRQI  822
              +++KAF+LC T   A+ + +E+AF+++VK  L K     K+ +  +KT  + +  I Q+
Sbjct  776   TELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKE-GKTRKTPAEVEAEINQL  834

Query  823   INSAVVSDSVVDIFDAVGLDKPNIGLLSDEFLAQVKNLPEKNLAVELLERLLEGEIKSRF  882
             ++ +VV++ V+D+++++GL++P++++LSD+FL +V  L +KN+AVELL+RLL G++KS  
Sbjct  835   VSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLM  894

Query  883   ASNVVQEKKFSELLAGVIKRYQNRSIETAQVMEELVAMARKFQEAANRGEALGLTEDEIK  942
              +N    K+FSE+L+  I++Y++RSIET++V+EEL+ +A+ +++  +RG+ LGL  DEI 
Sbjct  895   KTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIA  954

Query  943   FYDALATNESAVRELTDETLKKIAHELTENLRQNLSVDWSERESVRARLRLMVRRILRKY  1002
             FYDALA++E+A   + D  L+ IAHELT  +++N++VDWS R+S +A++R+ VRR+L+KY
Sbjct  955   FYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKY  1014

Query  1003  KYPPD  1007
              YPPD
Sbjct  1015  GYPPD  1019

72) Cag_1124 in NC_007514


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  825 bits (3125),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 515/1091 (48%), Positives = 783/1091 (72%), Gaps = 68/1091 (6%)

Query  3     HLTEHSIETFAIELLYKLGYEYIYAPDIAPDTSAGSVSEIRESFAQVLLLNRLQNAVKRI  62
             ++ E+ +E  A+E L  LGY+Y      + + S  S++  R S  +V+L +RL++A+++I
Sbjct  4     QFNEDDLEQVALEWLQSLGYDY----KKGNEISMTSLTPERKSDKDVVLHERLEKALRKI  59

Query  63    NHSIPADAQAEAIKEIQRIASPELLTNNETFHRLLTEGIPVSK-rvdgddrgdrvWLIDF  121
             N  I +     A+ E+    SP+LL NN TFH  L +GI +     +G+   + V +IDF
Sbjct  60    NSDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDF  119

Query  122   KNPHNNEFVVANQFTIIENGNNKRPDVILFVNGIPLVVIELKNATYENTTMHSAFKQIDT  181
               P+NN+F+  NQ+TI++ + +KRPD++LF+NG+P+VVIELKN+T E   ++ ++ Q++T
Sbjct  120   EYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLET  179

Query  182   YKKTIPSLFTYNGFIVISDGLEAKAGTISSGFSRFMAWKSADGKAEASHLVSQLETLIQG  241
             YK  IP LFT+N  +V SDG+++KAG++++ + RFM+W+S DG++E+S  ++ L+ LI+G
Sbjct  180   YKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHG  239

Query  242   MLNKETLIDLMRHFIVFEKSKKIDAKTGITTISTVKKLAAYHQYYAVNRAVESTLRASGY  301
             MLN ETL+DL+R F++F+     D+K  I+ I     LAAYHQYYAVN+AV+ +L AS+ 
Sbjct  240   MLNPETLLDLIRYFVLFQD----DGKGHISKI-----LAAYHQYYAVNKAVDRALLASSE  290

Query  302   QLVKETPLSMVMESPESYGLRGVKKQPIGDKKGGVVWHTQGSGKSLSMVFYTGKIVLALD  361
             Q                           GD KGGV+WHTQGSGKSL+MVF++GK++  L+
Sbjct  291   Q---------------------------GDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLN  323

Query  362   NPTILVITDRNDLDDQLFDTFA-----ASKQLIRQEPVQAEDRNQLKELLKVASGGVVFT  416
             NPT++V+TDRNDLD+QL+ TF      ++K L+RQ P QAE R++LK LL V SGG+VFT
Sbjct  324   NPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFT  383

Query  417   TIQKFQPNEGNIY-EKLSDRKNIVVIADEAHRTQYGFKAKTIDAKDEKGTIIGKKIVYGF  475
             T+QKF+P++ +     L++RKN++V+ADEAHRTQYGF+AK     D+KG  I     YG+
Sbjct  384   TMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKY----DDKGEGIK----YGY  435

Query  476   AKYMRDALPNATYLGFTGTPIENTDVNTPAVFGNYVDIYDIAQAVEDGATVRIYYESRLA  535
             AKY+RDALPNAT++GFTGTP+ +TD NT  VFGNY+D+YD++QAV DG+TV+IYYESR+ 
Sbjct  436   AKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVI  495

Query  536   KVSLSEEGKKLVAelddeleeeedVRAYSNTPQQKAKAKWTQLEALVGSENRIRNIAKDI  595
              ++L++ +  L    +D  E++       +  +Q+ K+KW+++EAL G+  R+  +AKDI
Sbjct  496   PLNLPQ-SLDLDEAYNDITEDQ------EEDVKQRLKSKWSRIEALAGAKPRVEALAKDI  548

Query  596   VAHFNQRQEVCNGKGMIVAMSRRIAADLYQAIINLKPEWHSEDLNKGVIKVVMTSASSDG  655
             + HF+ RQ+  +GKGMIV+MSRRIA DLY+ II LKPEWHS+D +KGVIKVVMT++SSD 
Sbjct  549   IQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDP  608

Query  656   PKISKHHTTKEQRRTLAERMKNPDDALQLVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLM  715
               + +H   K +R  L  RMK+ DD LQLVIVRDMWLTGFD PSMHT+YIDKPMKGHNLM
Sbjct  609   TSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLM  668

Query  716   QAIARVNRVYNDKPGGLIVDYLGIASDLKKALAFYSDAGGKGDPTILQEQAVQLMLEKLE  775
             QAIARVNRV++DKPGGLIVDY+GIA  LK AL  Y+++ ++++ +I  ++AV+LML K +
Sbjct  669   QAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYD  727

Query  776   VVSQMYYGFAYETYFEADTSKKLSLILAAEEHILGL-EDGKKRYINEVTALSKAFAIAIP  834
             V+ +M Y + Y  +     S +   I  + + ++GL ED ++R+I+ VT L+KAFA+   
Sbjct  728   VIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCAT  787

Query  835   HDQAMDVKDEVSFFQTVKARLAKF----DGTGSGKTDEEIETTIRQVIDKALISEQVIDV  890
             +  A +++DE++FF++VKA L K+        + KT  E+E+ I Q++ +++++E+VIDV
Sbjct  788   EPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDV  847

Query  891   FDAAGIKKPDISILSEDFLMELKGMEHKNVALEVLKKLLNDEIKSRAKKNLVKSRTFLDM  950
             +++ G+ +PD+SILS+DFL ++ G+ +KNVA+E+L++LL++++KS  K N   S+ F +M
Sbjct  848   YQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEM  907

Query  951   LENSIKKYHNKILTAAEVIDELIKLGKEIVETDDEAKRMGLTDFEYAFYTAVANNDSAKE  1010
             L NSI+KY+++ + ++ VI+ELI+L+K+I + ++ ++ +GL   E AFY A+A++++AKE
Sbjct  908   LGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKE  967

Query  1011  LMQQDKLRELAIVLTETIRQNTSIDWTIKESvkaklkvavkrvlrkYGYPPDMQLLATET  1070
              M +  LR +A  LT T+++N ++DW+ ++S KAK++VAV+R+L+KYGYPPD+Q +A E 
Sbjct  968   AMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQ  1027

Query  1071  VLKQAEMIANE  1081
             V+ QAE++AN+
Sbjct  1028  VVEQAELMANN  1038

73) Bpro_1944 in NC_007948


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  824 bits (3120),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 493/1048 (48%), Positives = 759/1048 (73%), Gaps = 33/1048 (3%)

Query  2     TEDQLEQETLAWLADVGYTHRYGPDIAHDGAMPERSSYRQVLLPFRLREAIQKLNPGIPT  61
              ED+LEQ +L WL  +GY  + G +I+  +  PER S ++V+L  RL  A++K+N++I  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDALKQVLDLG-IPALLTANQHFHRLLVAGVPVR-YQKDGETRGDFVRLIDWADPER  119
                E AL + L L   P LL  N  FH  L+ G+ +  Y+ +G++  ++V++ID   P+ 
Sbjct  66    RFIEKALHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  120   NEWLAVNQFSIKGPHHTRRPDIVLFVNGLPLVLLELKNPADKNADIWRAYDQIQTYKEQI  179
             N+ LAVNQ++I   +  +RPDIVLF+NGLP+V++ELKN+++   ++  +Y+Q++TYK +I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   PDVFQTNEVLVITDGTEALMGSLSADAERFMAWRTIDGVTLDPLGEFNELQTLVRGVLAP  239
             P++F  NEVLV +DG ++  GSL+A+ +RFM+WR+ DG T ++   +  L+ L++G+L P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQT-ESSPGLASLDVLIHGMLNP  243

Query  240   AYFLDFLRYFVLFEDDGA--LVKKIAGYHQFHAVRAAILQVVDASRPGGSQKGGVVWHTQ  297
               +LD++RYFVLF+DDG   + K +A+YHQ+ AV  A+ + + AS   G  KGGV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  298   GSGKSITMTCFAARVMQEPAMENPTIVVITDRNDLDGQLFGVF-----SLAQDLLREQPV  352
             GSGKS+TM  F+++++Q   ++NPT+VV+TDRNDLD QL++ F       +++LLR+ P 
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  353   QVSTRQDLRAKLANRPSGGIVFATIQKFMPGEDEDTFPMLSDRHNIVVIADEAHRTQYGF  412
             Q  TR++L++ L+   SGGIVF+T+QKF P ++E T + L++R N++V+ADEAHRTQYGF
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  413   EAKLKGKQGQESYQGGYAQHLRDALPNATFVAFTGTPVSSTDRDTRAVFGDYIHIYDMQQ  472
             +AK  +K     Y  GYA+ LRDALPNATFV+FTGTPV+STD++T+ VFG+YI++YDM Q
Sbjct  421   NAKYDDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  473   AKDDGATVAIYYESRLAKLSLIES-DLSQMdeevdelaeddeeSQQAVLKSRWAALEKVV  531
             A  DG+TV IYYESR+  L+L +S DL +  +++ E  E+D   +   LKS+W+ +E + 
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQR---LKSKWSRIEALA  535

Query  532   GAEPRVASVAADLVTHFEERNKAQPGKAMVVAMSRDICVHLYNEIVKLRPDWHDADPEKG  591
             GA PRV ++A D++ HFE R++A  GK+M+V+MSR I V+LY+EI++L+P+WH  D +KG
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKG  595

Query  592   AVKIVMTGSASDKPLLRPHIYSAQTKKRLEKRFKDPADPLRLVIVRDMWLTGFDAPCVHT  651
              +K+VMTGS+SD   ++ HI + + ++ LEKR KD  D L+LVIVRDMWLTGFD P +HT
Sbjct  596   VIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHT  655

Query  652   LYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIGNELKSAMKEYTQSKGRGRPTVD  711
             +Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GI++ LK A+KEYT+S ++++ ++D
Sbjct  656   MYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAID  714

Query  712   AHEAYSVLAEKLDVLRSMLHGFDYTGFLTGGHK----TLAGAANHVLGLNTGSSRDGKKR  767
             ++ A  ++  K DV++ ML  +DY+ F ++       T++ + + V+GL    + D ++R
Sbjct  715   TDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGL----GEDERQR  770

Query  768   FADTALAMSQAFTLCCTLDEAKAVREEVAFMQGVKVILTKKELTAK----RRTDEARELA  823
             F  T   +++AF+LC T   A+ + +E+AF ++VK  L K    +K    R+T    E  
Sbjct  771   FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAE  830

Query  824   IRQIIssavvsesvvDIFDAVGLDKPNIGLLDDEFLAQVKNLPEKNLAVELLERLLEGEI  883
             I Q++S +VV+E V+D+++++GL++P++++L D+FL +V  L +KN+AVELL+RLL G++
Sbjct  831   INQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQV  890

Query  884   KSRFTSNVVQDKKFSEMLANVITRYQNRSIETAQVMEELVEMAKKFREAASRGESLGLTE  943
             KS   +N    K+FSEML+N I +Y++RSIET++V+EEL+++AK +++   RG+ LGL  
Sbjct  891   KSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNS  950

Query  944   DEVRFYDALANNESAVRELTDETLKKIAHELTENLRQNLSVDWSERESVRAKLRLMVKRI  1003
             DE+ FYDALA++E+A   + D  L+ IAHELT  +++N++VDWS R+S +AK+R+ V+R+
Sbjct  951   DEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRL  1010

Query  1004  LRKYKYPPDLQDAAVELVLKQAQVMGES  1031
             L+KY YPPDLQ  AVE V+ QA++M+++
Sbjct  1011  LKKYGYPPDLQKMAVEQVVEQAELMANN  1038

74) RoseRS_0281 in NC_009523


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  823 bits (3115),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 463/1043 (45%), Positives = 747/1043 (72%), Gaps = 49/1043 (4%)

Query  6     HFCESTIESAALARLEASGWQVAHGPDLAPGTRTAERRDYGEVVLTGRLRDALARLNPDL  65
             +F E  +E  AL +L++ G +   G +++  + T+ER+   +VVL  RL  AL ++N+D+
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  66    PVEALDDAFRQLTQPQGADLIQRNRAQHRLLVDGVTVEHRNAGGAICGAQARVIDFDDPA  125
                 ++ A+++LT  ++++L++ N + H  L++G+ +E+ +  G       ++IDF+ P 
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  126   NNDWLAVNQFTVVENKHTRRPDIVLFVNGLPLAVLELKNAADEKATIWTAWQQLQTYQAQ  185
             NND LAVNQ+T+V+    +RPDIVLF+NGLP+ V+ELKN+++E   +  + +QL+TY+ +
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  186   IPSLLATNAALVISDGLTARVGALGAGREWFKPWRTIHGEALADPHMPELQVVIEGLFAP  245
             IP L++ N  LV SDG+ ++ G+L A  ++F  WR+ +G++ + P ++ L+V+I+G++ P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  246   RRFLDFVRDFIVFEDDGSGRLIKKMAGYHQFHAVQVAVAETLRAAELARTDQVAeergry  305
               +LD++R F++F+DDG G++ K +A+YHQ+ AV+ AV  +L    LA ++Q     G  
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRAL----LASSEQGDGKGG--  297

Query  306   eagrrpggkpgdrrigVVWHTQGSGKSLTMVFYAGRIVREPAMENPTIVVLTDRNDLDDQ  365
                             V+WHTQGSGKSLTMVF++G++++   ++NPT+VV+TDRNDLD+Q
Sbjct  298   ----------------VIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQ  339

Query  366   LFATFARCRD-----LLRQPPVQAESRVHLRQILSVAAGGVVFTTIHKFFPEEKGDRHPT  420
             L++TF + ++     LLRQ P QAE+R +L+ +LSV +GG+VFTT++KF PE++    ++
Sbjct  340   LYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAA  399

Query  421   LSERRNIVVIADEAHRSQYDFID-----------GFARHMRDALPNASFIGFTGTPIEKT  469
             L+ER+N++V+ADEAHR+QY+F             G+A+ +RDALPNA+F+GFTGTP+  T
Sbjct  400   LTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVAST  459

Query  470   DANTRAVFGDYISIYDIQRAVEDGVTVPIYYESRLAKLALDETERPKIDPDFeevtegee  529
             D NT+ VFG+YI +YD+ +AV DG TV IYYESR+  L L ++    +D  ++++TE++E
Sbjct  460   DKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQE  517

Query  530   verkerLKSKWAQFEAIVGAEKRLRLVARDIVEHFEKRLEALDGKAMIVCMSRRICVELY  589
              + K+RLKSKW+++EA+ GA  R+  +A+DI++HFE R +A+ GK+MIV MSRRI V+LY
Sbjct  518   EDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLY  577

Query  590   REIAQLRPQWAADDDERGAMKVVMTGSASDPLDWQPHIRNKPRREALANRFRNPGDPFRL  649
              EI +L+P+W +DDD++G +KVVMTGS+SDP   Q HI  K RR+ L +R ++ +D ++L
Sbjct  578   DEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQL  637

Query  650   VIVRDMWLTGFDAPSLHTMYIDKPMRGHGLMQAIARVNRVFHDKPGGLVVDYLGLAHELK  709
             VIVRDMWLTGFD PS+HTMYIDKPM+GH LMQAIARVNRVF DKPGGL+VDY+G+A+ LK
Sbjct  638   VIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLK  697

Query  710   AALATYTESGGTGQTTVDQQEAIALMQEKYEICCGILHGFDWSDWISGDPQARIGLLPAA  769
              AL  YTES + +QT++D + A+ LM  KY++  ++L  +D S   S+    R   ++ +
Sbjct  698   EALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNT  756

Query  770   QEQVLS-RVNGKERFIQAVRDLTRAFALATLHEEAIKIRDDVAFFQAVQAALTK-----R  823
              + V++   + ++RFI++V +L +AFAL + +  A  + D++AFF+AV+A+L K     +
Sbjct  757   MDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPK  816

Query  824   APGEMRPEDELDHAVRQIIARAVAPAGVIDIFTAAGLQKPDISILSNEFLAEVRGMPQRN  883
                  +   E++  + Q+++++V   +VID++ + GL++PD+SILS++FL +V G+ Q+N
Sbjct  817   EGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKN  876

Query  884   LAVETLQKLLKGEISTRQRKNVVQARSFAEMLEQTIRRYQNRAIEAAQVIEELISLARDM  943
             +AVE L++LLKG++ +  + N   ++ F+EML ++I +Y++R+IE+++VIEELI LA+D+
Sbjct  877   VAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDI  936

Query  944   READARGKKLGLSEEELAFYDALETNDSAVKVLGDETLRTIARELVKTVRSNVTIDWTIR  1003
             ++ + RG+ LGL+ +E+AFYDAL ++++A   +GD  LR+IA+EL KTV+ N+ +DW+ R
Sbjct  937   KQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKR  996

Query  1004  ENVRAQLRVLVKRILRKYGYPPD  1026
             ++ +A++RV V+R+L+KYGYPPD
Sbjct  997   DSAKAKMRVAVRRLLKKYGYPPD  1019

75) Thein_1571 in NC_015681


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  822 bits (3112),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 496/1061 (47%), Positives = 775/1061 (74%), Gaps = 51/1061 (4%)

Query  2     AESEVESAALAWLESLGWQIKHGPEIAPGEPFAERDDYQEVILPQRLKDALARLNPELPI  61
              E ++E  AL WL+SLG + K G EI+     +ER   ++V+L +RL  AL ++N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    EALDEAFRKLVNPPGATVEARNRAFHRMLVDGVTVEYRREDGSIAGAQARVIDFDDSENN  121
               ++ A++ L    ++ +   N +FH  L++G+ +E   ++G       ++IDF+ ++NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  122   DFLAVNQFTVTEGRHTRRPDIVLFVNGLPLVIIELKNPADEEATIWTAYQQLQTYKAELP  181
             DFLAVNQ+T+ +G   +RPDIVLF+NGLP+V+IELKN+++E   +  +Y+QL+TYK  +P
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  182   TLFAFNELLVISDGLEARMGTLTAGREWFKPWRTISGERVEDEGVLQLEVLLKGVFDLER  241
              LF+FNE+LV SDG++++ G+LTA  ++F  WR+  G+     G+  L+VL+ G+++ E 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPET  245

Query  242   FLELIRDFMVYEDDG-GRLSKKVAGYHQFHAVRVAVRETLRAAALAKDEGLRVREEIGRY  300
             +L+LIR F++++DDG G++SK +A+YHQ+ AV  AV  +L    LA  E           
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRAL----LASSE-----------  290

Query  301   EVRGQGGRPGDRRIGVVWHTQGSGKSLTMVFYAGRIIREPAMQNPTVVVLTDRNDLDDQL  360
                      GD + GV+WHTQGSGKSLTMVF++G++I+   ++NPT+VV+TDRNDLD+QL
Sbjct  291   --------QGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQL  340

Query  361   FGVFSRCQE-----LLRQEPVQAKSRAHLRELLSREAGGIIFTTIQKFFPDEKGDQHPLL  415
             ++ F + +      LLRQ P QA +R +L+ LLS E+GGI+FTT+QKF P+++    + L
Sbjct  341   YSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAAL  400

Query  416   SSRRNIVVIADEAHRSQYDFID-----------GFARHIRDALPNASFIAFTGTPIELED  464
             + R+N++V+ADEAHR+QY+F             G+A+ +RDALPNA+F++FTGTP+   D
Sbjct  401   TERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTD  460

Query  465   RNTRAVFGDYISIYDIQRAVEDGATVPIYYESRlaklalpkelkpkIDeefeevtereev  524
             +NT+ VFG+YI +YD+ +AV DG+TV IYYESR+  L LP+ L   +DE ++++TE +E 
Sbjct  461   KNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEE  518

Query  525   erkeklktkWAQLEAIVGAEPRLRMIAKDIVKHFERRLEALDGKGMIVCMSRRICVDLYN  584
             + K++LK+KW+++EA+ GA PR+  +AKDI++HFE R +A+ GKGMIV MSRRI VDLY+
Sbjct  519   DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYD  578

Query  585   QIIHLRPDWHHEDDDKGVIKVVMTGSASDPPEWQPHIRNKERREFLARRFRDPNDPLKLV  644
             +II+L+P+WH +DDDKGVIKVVMTGS+SDP   Q HI  K RR++L +R +D +D L+LV
Sbjct  579   EIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLV  638

Query  645   IVRDMWLTGFDCPSLHTMYIDKPMRGHGLMQAIARVNRVFRDKPGGLVVDYIGLARELKQ  704
             IVRDMWLTGFD PS+HTMYIDKPM+GH LMQAIARVNRVF+DKPGGL+VDY+G+A  LK+
Sbjct  639   IVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKE  698

Query  705   ALAVYTESGGKGRTALDQEEAVAVMQEKYEICCDLFHGFDWSAWKTGTPEERLALLPAAQ  764
             AL  YTES ++++TA+D + AV +M  KY++  D++  +D S  +++   ER   ++ + 
Sbjct  699   ALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTM  757

Query  765   EHILA-QPDGKDRFVKAVLELSKAFALAVPHEEALRIRDDVAFFQAVRSALVK--RAPLD  821
             + +++   D ++RF+K+V EL+KAFAL   +  A  + D++AFF+AV+++LVK  ++P +
Sbjct  758   DYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKE  817

Query  822   ARPQ---EELDYALRQLVDRAVDPEGVVDIFAAAGLKKPDISILSEEFLAEIQDMPQKNL  878
             ++ +    E++  + QLV ++V  E+V+D++ + GL +PD+SILS++FL +++++ QKN+
Sbjct  818   GKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNV  877

Query  879   AVELLRKLLQGEIRTRRRKNVVQARRFSEMLERALRRYQNRAIEAAQVIEELIALAREMR  938
             AVELL +LL+G++++  + N   ++RFSEML  ++ +Y++R+IE+++VIEELI LA++++
Sbjct  878   AVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIK  937

Query  939   KSDrrgeelglseeeVAFYDALAANESAVEVLGDKTLRKIAQELVRLVRENVTVDWAQRE  998
             + ++RG+ELGL+ +E+AFYDALA++E+A E +GDK LR IA+EL + V+EN+ VDW++R+
Sbjct  938   QEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRD  997

Query  999   NVRAYLRVLVKRTLRKYGYPPDKQEEATQTVLKQAEVLGGE  1039
             + +A +RV V+R L+KYGYPPD Q  A + V+ QAE+++ +
Sbjct  998   SAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

76) Veis_3013 in NC_008786


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  821 bits (3108),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 476/1053 (46%), Positives = 746/1053 (71%), Gaps = 57/1053 (5%)

Query  18    RGLGYRIEQEKDIGPDGPRPERESHDEVVLKKRFADAVARLNPGLPLEARQVAMRRLMQS  77
             ++LGY   + ++I+  +  PER S+ +VVL  R+  A+ ++N+++     + A++ L   
Sbjct  19    QSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLE  78

Query  78    ELPTLLEENRRLHKLMTDGVEVEYYAEDGTLTTGTVALIDFKRPEQNDWLAVSQFVVIAG  137
               P LLE+N  +H  + +G+E+E Y ++G      V +IDF  P++ND LAV+Q+ ++ G
Sbjct  79    KSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNG  138

Query  138   QYQRRPDvvvfvnglplvvIELKALGNATL--LAAFQQLQNYKQQIAALFNTNALLVTSD  195
             +Y++RPD+V+F+NGLP+VVIELK   N T+    +++QL+ YK +I+ LF  N +LVTSD
Sbjct  139   DYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSD  198

Query  196   GVHARVGSLSADQERFMPWRTTDGTAITPKGKPELPTLIEGVFAHRRLLDLLRHFTVFDE  255
             G++++ GSL+A+ +RFM WR+ DG + ++ G + L  LI+G++    LLDL+R F +F++
Sbjct  199   GINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQD  258

Query  256   TGSG-LVKIIAGYHQFHAVMRAVDSTLRASSQWQGVQEDPRDYGWSSVKTQAKGDRRAGV  314
              G G + KI+A+YHQ+ AV +AVD +L ASS+                    +GD ++GV
Sbjct  259   DGKGHISKILAAYHQYYAVNKAVDRALLASSE--------------------QGDGKGGV  298

Query  315   IWHTQGSGKSLLMVFYARQLAQHVAMANPTLVVLTDRNDLDDQLFATFSRCRD-----FI  369
             IWHTQGSGKSL MVF++ +L Q   + NPTLVV+TDRNDLD+QL++TF + ++     ++
Sbjct  299   IWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLL  356

Query  370   RQTPVQANSREDLQKLLMRASGGVIFTTLQKFAESSQ-----PLTERHNVVVIADEAHRS  424
             RQTP QA++R +L+ LL   SGG++FTT+QKF    +     +LTER NV+V+ADEAHR+
Sbjct  357   RQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRT  416

Query  425   QYGFRAKLDARTGGVSYGFAKYLRDALPHASFIGFTGTPIEASGVNTRAVFGNYIDIYDI  484
             QYGF AK D +  G+ YG+AKYLRDALP+A+F+GFTGTP+ +++ NT+ VFGNYID+YD+
Sbjct  417   QYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDM  476

Query  485   SRAVEDGATVLIYYESRLARIELDGDERHKIDAEVDAMIEDDSEAEQERFKKEWSTVEAL  544
             ++AV DG+TV IYYESR+  ++L   +   +D   + + ED+ E  ++R+K  WS +EAL
Sbjct  477   TQAVADGSTVKIYYESRVIPLNLP--QSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEAL  534

Query  545   VGSDKRLALIAQDMVTHFEARMAALDGKAMAVCMSRHVCVRLYEEIVKLRPGWHSADDKA  604
              G+  R+  +A+D++ HFE+R  A+ GK+M V MSR++ V LY+EI++L+P WHS DD  
Sbjct  535   AGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDK  594

Query  605   GALKIVMTGAASDPAEWQQHVGNKARRDVLAKRARDIRDPLKLVIVCDMWLTGFDAPCMH  664
             G +K+VMTG++SDP+  Q+H+G K RR++L KR +D+ D L+LVIV DMWLTGFD P MH
Sbjct  595   GVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMH  654

Query  665   TMYVDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAHYLKSALRQYSKSDRKNTGID  724
             TMY+DKPM+GH LMQAIARVNRVF+DKP+GLIVDY+GIA+ LK AL++Y+ SD+ +T+ID
Sbjct  655   TMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAID  714

Query  725   ESKAVAMMMEKYEIVRNMYHGFDYT--LDGTAQERLVMMAGAIEWILDMQQKSAARESSR  782
               KAV +M+ KY+++++M   +DY+    +   ER   ++ +++ ++++ +         
Sbjct  715   TDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGE---------  765

Query  783   EGKKTAHRRYQDAVLALSKAFSLVSASDEARTIREEVGFFQAIRDALVK-----SSGAMG  837
                   ++R+  +V  L+KAF+L ++   A+ + +E++FF+A++ +LVK       G   
Sbjct  766   ----DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTR  821

Query  838   VMGQERELAIRQIVSRAVISTEIVDILAAVGIKSPDISILSDQFLTEIAQMERKNLALEA  897
                 E E  I Q+VS++V++ +++D+  ++G+  PD+SILSD+FL ++  + +KN+A+E 
Sbjct  822   KTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVEL  881

Query  898   LRKLINDDIRSRSKANVVQSKAFSERLEEAMARYHANAITTAEVLQELITLAKDIRAERQ  957
             L +L++++++S  K+N   SK FSE L +++ +Y++ +I T+ V++ELI LAKDI+ E+Q
Sbjct  882   LNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQ  941

Query  958   RGEESGLSDEEIAFYDALAENDSALQMMGDDKLRLIAHELLVSLRNNISVDWAHRESARA  1017
             RG+E GL+ +EIAFYDALA +++A + MGD  LR IAHEL  ++++N++VDW+ R+SA+A
Sbjct  942   RGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKA  1001

Query  1018  QMRMLVKRILRKYGYPPDLQDEAVRTVLRQAEV  1050
             +MR+ V+R+L+KYGYPPDLQ  AV  V+ QAE+
Sbjct  1002  KMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

77) hsdR2 in NC_014145


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  818 bits (3095),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/1046 (47%), Positives = 752/1046 (72%), Gaps = 31/1046 (2%)

Query  4     LNEDHLEQATLQWLSALGWQTAHGPDISPPDAKTHGTERDTYRQVCLSHRIEAAIQRLNP  63
             +NED+LEQ +L+WL +LG +   G +IS     +   ER + ++V L +R+E A++++N+
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMT---SLTPERKSDKDVVLHERLEKALRKINS  61

Query  64    GIPSTAQVEALRQVLSPNTPGLIAANRQFHRWLVEGVPVE-YQKDGETRGDRVRLIDFSD  122
             +I +     AL+++   ++P L+  N  FH  L++G+ +E Y+ +G++  + V++IDF  
Sbjct  62    DIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEY  121

Query  123   VGRNDWLAVNQFSIQGPKHTRRPDVILFINGLPLVTLELKNPGDENADIWGAFNQLQAYK  182
                ND LAVNQ++I      +RPD++LFINGLP+V +ELKN+ +E  ++ ++++QL++YK
Sbjct  122   PQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  183   EDIPDLFVYNELLVITDGISARLGSLTANRERFMAWRTIDGHATDPLGPMRELETLVHGA  242
               IP+LF +NE+LV +DGI+++ GSLTAN +RFM+WR+ DG++  + G +  L+ L+HG 
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPG-LASLDVLIHGM  240

Query  243   FDRKTLLDYLQHFILFEDDG-GLVKKV-AGYHQFHAVRAVVESVLKASAPGGSRKGGVVW  300
             ++  TLLD ++ F+LF+DDG G + K+ A+YHQ+ AV   V+  L AS+  G  KGGV+W
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  301   HTQGAGKSIEMTCLGGMLMQNPQMGNPTLLVVTDRNDLDNQLFGVFA-----GATELLHE  355
             HTQG+GKS+ M  ++G L+Q   + NPTL+VVTDRNDLDNQL++ F      ++  LL++
Sbjct  301   HTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  356   TPVQADTRPRLRELLGNRPSGGIVFTTIQKFAPGEDEDTFPVLSERSNIVVVCDEAHRSQ  415
             TP QA+TR  L+ LL+   SGGIVFTT+QKF P ++E T + L+ER N++V+ DEAHR+Q
Sbjct  359   TPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQ  417

Query  416   YGFSADIKKDGK-VTYGYAQYLRDALPQATFVAFTGTPVSLEDRDTRAVFGDYVHIYDVE  474
             YGF+A     G  + YGYA+YLRDALP+ATFV+FTGTPV+  D++T+ VFG+Y+++YD+ 
Sbjct  418   YGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  475   QAVKDGATVPIYYesrlaklelseesstlldgdideltedeeddASKAAKLR-RWAALEK  533
             QAV DG+TV IYYESR+  L+L++        +     ++         +L+ +W+ +E 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQE----EDVKQRLKSKWSRIEA  533

Query  534   LVGAPPRIQKVAADIVEHFENRLAALDGKAMVVGMSREICVHLYDALVALRPEWHDPDPD  593
             L GA PR++ +A DI++HFE R  A+ GK+M+V MSR I V+LYD ++ L+PEWH  D D
Sbjct  534   LAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDD  593

Query  594   KGAIKIIMTGSASDKPMLKPHIYTKEVKKRLERRYKDPADPFKLVIVRDMWLTGFDAPCM  653
             KG IK++MTGS+SD   ++ HI  K  ++ LE+R KD  D ++LVIVRDMWLTGFD P M
Sbjct  594   KGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSM  653

Query  654   HTMYIDKPMRGHSLMQAIARVNRVFKDKPGGLVVDYIGIANELKAALKDYTLAHGKGRPT  713
             HTMYIDKPM+GH+LMQAIARVNRVFKDKPGGL+VDY+GIA+ LK ALK+YT   ++++ +
Sbjct  654   HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT-ESDQAQTA  712

Query  714   IDTHEALRLLLEKMEVLHGILHGCDYADF----RAQAWQLLPKVANHILG-QDDGKKRFA  768
             IDT+ A+ L+L K +V++++L   DY+ F    +++    +++  + ++G  +D ++RF 
Sbjct  713   IDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  769   DAVLSASKAFALCCTLDEALEHRDELAFLQAVKAALTK--HTTQDKKL--SDEQKEHALR  824
              +V   +KAFALC T   A E  DE+AF++AVKA+L K  +  ++ K   +  + E  + 
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  825   QILSKAVVSAEVVDIFQAAGLNKPDIGILSDEFLDDVRHMKERNLAVELLERLLKDDIKT  884
             Q++S++VV+ +V+D++Q+ GL++PD++ILSD+FL DV  +K++N+AVELL+RLLK+++K+
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  885   RFKTNVVKAAKYSELLQESLKRYQNRAIETAQVIEELIAMAKQFHEEAIKGAALGLSPDE  944
               KTN   + ++SE+L +S+++Y++R+IET++VIEELI +AK++ +E  +G  LGL++DE
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  945   RAFYDALAANESAVRELGDETLKKIAVELTLKLRNSVTVDWSVRDSVRASLRVMVKTLLR  1004
              AFYDALA++E+A   +GD  L+ IA ELT  +++++ VDWS RDS +A +RV V+ LL+
Sbjct  953   IAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLK  1012

Query  1005  RYKYPPDKQEEATETVLRQAEMLSAE  1030
             +Y YPPD Q  A E V+ QAE+++ +
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAELMANN  1038

78) Zmob_1744 in NC_017180


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  818 bits (3095),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 490/1063 (47%), Positives = 768/1063 (73%), Gaps = 44/1063 (4%)

Query  1     MSF-LSENEIE----DWACDILRECGYTIVWGPDIAPGGKKPERASLSDVILEKRLRAAI  55
             M+F ++E+++E    +W    L+  GY    G +I+  +  PER S  DV+L+ RL  A+
Sbjct  1     MNFQFNEDDLEQVALEW----LQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKAL  56

Query  56    DRLNPHLLQASRDETLLALIREDTPDHVDENRRLHDYLVNGVPVDVVREDGTQSGDRVRL  115
              ++N+++     + +L  L  E +P+ +++N  +H+ L+NG+ ++   ++G    + V++
Sbjct  57    RKINSDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKI  116

Query  116   LDFDTPENNDFLVVRQFVLEKDEANRRPDLVLFINGMPLGVVELKSPSSENATLDSAWNQ  175
             +DF+ P+NNDFL V Q+ + +++ ++RPD+VLFING+P+ V+ELK++++E   ++ + +Q
Sbjct  117   IDFEYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQ  176

Query  176   FQTYRSLISSLFRFNEALMISDGTQARVGSLTAGRDRFMPWRTINGEDLIAKNHEEMETV  235
             ++TY+  I+ LF FNE L+ SDG +++ GSLTA  DRFM WR+ +G+   +     ++ +
Sbjct  177   LETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVL  236

Query  236   LRGVFTPHWFLGLIRDFVLFGEKNGSPI-KILAGYHQFHACLKAVTQTVRASAPDGNRKV  294
             ++G++ P+ +L+LIR FVLF +   + I KILA+YHQ+ A  KAV +++ AS+ +G+ K 
Sbjct  237   IHGMLNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKG  296

Query  295   GVVWHTQGSGKSLLMTFYAGVIARHPEMENPTIIVLTDRNDLDDQLFATF-----SGAQA  349
             GV+WHTQGSGKSL M F++G + +   ++NPT++V+TDRNDLD+QL++TF      ++++
Sbjct  297   GVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKG  354

Query  350   LLRQIPEQADSRDDLQKLLRRTSGGVIFTTLQKFQPEDGETSLPMLTDRRNVVVMADEAH  409
             LLRQ P QA++R +L+ LL   SGG++FTT+QKF+PE+ ET+++ LT+R+NV+VMADEAH
Sbjct  355   LLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAH  414

Query  410   RSQYGLEAKFNPKTGKMTYGFAKYLRDALPNASFIGFTGTPIENADVNTRGIFGdyidiy  469
             R+QYG++AK++ K   + YG+AKYLRDALPNA+F+GFTGTP+ ++D NT+ +FG+YID+Y
Sbjct  415   RTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVY  474

Query  470   diAQAVEDGATVPIYYESRLVRIeldedlkdelddeladIVEGLCENEEHKLSQKYSRVE  529
             D++QAV DG+TV IYYESR++ ++L + L  +   +   I E+  E+  ++L  K SR+E
Sbjct  475   DMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYND--ITEDQEEDVKQRLKSKWSRIE  532

Query  530   ALVGSEPRLRRIAVDLVTHFENRLNALEGKGMIVGMSRAICVALYNEIIRLRPAWHSDDD  589
             AL G+ PR+  +A D++ HFE R +A+ GKGMIV MSR I V LY+EIIRL+P WHSDDD
Sbjct  533   ALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD  592

Query  590   NEGAIKVVMTGSSSDPAGLQPHIGKKSKARRELLAKRMKDNNDPLRLVIVRDMWLTGFDV  649
             + G IKVVMTGSSSDP+++Q HIG  +K RR+LL KRMKD +D L+LVIVRDMWLTGFDV
Sbjct  593   DKGVIKVVMTGSSSDPTSFQRHIG--PKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDV  650

Query  650   PSMHTMYVDKPMRGHGLMQAIARVNRVFKGKPGGLVVDYIGLAQNLKAALGEYSAGDREQ  709
             PSMHTMY+DKPM+GH LMQAIARVNRVFK+KPGGL+VDY+G+A++LK AL EY+ +D+ Q
Sbjct  651   PSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ  710

Query  710   VGIDEGKAIRALQERYEVVRAMFNPGQAAGFDYRPALQDEATAKTKLSIMAGALDHILGQ  769
              +ID +KA+  +  +Y+V++ M+   + + F+             +   ++ ++D ++G 
Sbjct  711   TAIDTDKAVELMLLKYDVIQDMLYNLDYSKFN-------SDKKSERYYTISNTMDYVIGL  763

Query  770   QQRAMVTAKSAEERKAIQKRYPDGVKalsvafalasasdeaarlrdEIGFFEAVRAALVK  829
                      + +ER+    R+   V  L+ AFAL ++   A  L DEI+FF AV+A+LVK
Sbjct  764   ---------GEDERQ----RFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVK  810

Query  830   ---SASNGSDGRSAQELELAIKQLVSKAVISTDIIDIMEVAGIGKPDISILSDTFLQEVR  886
                ++ +G   +++ E+E  I+QLVS++V++ D+ID+ +  G+ +PD+SILSD FL++V 
Sbjct  811   LLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVE  870

Query  887   EMPQRNLAIDALKKLLEGQIRSRTRTNITEAEAFSQRLEQAVARYHANALTSAQILDELI  946
              + Q+N+A++ L++LL GQ++S  +TN T +  FS+ L +++ +Y++ ++ ++++++ELI
Sbjct  871   GLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELI  930

Query  947   RMAHDMVSACDRGEELGLTQEEIAFYDALAQNESAKEAMGDPGLRAIATALVKTIRVNAT  1006
             ++A D+    +RG+ELGL  +EIAFYDALA +E+AKEAMGD  LRAIA  L KT++ N  
Sbjct  931   QLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMG  990

Query  1007  VDWTVMAQARAKMRTSVKRLLRRYGYPPDMQDEAVQHILRQAE  1049
             VDW+    A+AKMR +V+RLL++YGYPPD+Q  AV++++ QAE
Sbjct  991   VDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAE  1033

79) Anacy_6058 in NC_019773


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  816 bits (3090),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 480/1064 (46%), Positives = 770/1064 (73%), Gaps = 40/1064 (3%)

Query  1     MKSALTEAEIEAYQLQLLQTLGYSYCNGYDIQPEGSNQERESFGEVILKHRLPQSISRIN  60
             M+  + E ++E   L+ LQ+LGY Y +G +I   +   ER S  +V+L +RL +++ +IN
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  61    PTIPYDAQYQAQREIFNIA---SSDLLNNNEIFHKYLTEGITVE-YQKDGETRGQPVQLI  116
             + I  ++++  ++ + +++   S++LL+NN  FH  L +GI +E Y+ +G++  + V++I
Sbjct  61    SDI--HPRF-IEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKII  117

Query  117   DWEHPENNEFVAVNQFTVIEDNHNHRPDIVLFINGLPLVVIELKNAVDEKANLNAAYNQL  176
             D E P+NN+F+AVNQ+T+++++ + RPDIVLFINGLP+VVIELKN+ +E   ++ +Y+QL
Sbjct  118   DFEYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQL  177

Query  177   QTYKQRIPSLFTYNALLVISDGLSARAGSLTAGFNRFSTWKVPPSAGEGNRQNPEINELE  236
             +TYK RIP LFT+N +LV SDG++++AGSLTA ++RF TW+   +  E++   P +  L+
Sbjct  178   ETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESS---PGLASLD  234

Query  237   IltngllnqqtlldlIRYFTVFEKSKTTDLKTDIVSITTVKKIAAYHQYYAVNKAIQSII  296
             +L +G+LN +TLLDLIRYF +F+     ++          K +AAYHQYYAVNKA++  +
Sbjct  235   VLIHGMLNPETLLDLIRYFVLFQDDGKGHIS---------KILAAYHQYYAVNKAVDRAL  285

Query  297   TASSPEGNHKGGVLWHTQGSGKSLSMVFLAGKLVLNKSLQNPTIVMLTDRNDLDDQLFDT  356
              ASS +G+ KGGV+WHTQGSGKSL+MVF++GKL+  + L+NPT+V++TDRNDLD+QL+ T
Sbjct  286   LASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYST  343

Query  357   FAGCQQ-----LLRQDPQQAENRDQVRELLNTNSGGIIFTTVQKFSPADGETLYPQISPR  411
             F   +      LLRQ P+QAE R +++ LL+ +SGGI+FTT+QKF P + ET  + ++ R
Sbjct  344   FVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTER  403

Query  412   PNIIVLADEAHRSQYGFTATQVDIKDENGNITGKRTKYGFAKYIRDALPNATFIGFTGTP  471
              N+IV+ADEAHR+QYGF A   D         G   KYG+AKY+RDALPNATF+GFTGTP
Sbjct  404   KNVIVMADEAHRTQYGFNAKYDD--------KGEGIKYGYAKYLRDALPNATFVGFTGTP  455

Query  472   VEQTDKNTPAIFGEYIDIYDISQAVKDGATVPIYYESRLVKVDLDAAGRQlldeldedls  531
             V  TDKNT  +FG+YID+YD++QAV DG+TV IYYESR++ ++L + + +L +  ++   
Sbjct  456   VASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNL-PQSLDLDEAYNDITE  514

Query  532   fedlsTTQKAKAKQTQLEAIVGSTKRIKQIALDIVTHFEARQQVNKGKAMIVTMSRLIAV  591
              ++    Q+ K+K +++EA+ G+  R+  +A DI+ HFE+RQQ  KGK+MIVTMSR IAV
Sbjct  515   DQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAV  574

Query  592   NLYDAIIQLRPDWHNADINLGKIKVVMTTSASDEGNLVKHHTSKGQRQTLAQRLKDPDNS  651
             +LYD II+L+P+WH+ D + G IKVVMT S+SD  ++ +H  +K +R+ L +R+KD D+ 
Sbjct  575   DLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDE  634

Query  652   LELAIVCDMWLTGFDAPCLHTMYIDKPLKSHNLMQAIARINRVYFEKTGGLIVDYLGLAA  711
             L+L IV DMWLTGFD P +HTMYIDKP+K+HNLMQAIAR+NRV+ +K GGLIVDY+G+A 
Sbjct  635   LQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAE  694

Query  712   ELKKALSFYSQSGGQGALTLDQDVAVGILLAKLEIVKQIISGFAYQHYFHTDTGEKLNIL  771
              LK AL  Y++S +Q+  ++D D AV ++L K +++++++  + Y  +     +E+   +
Sbjct  695   SLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTI  753

Query  772   KNAVNYVA--TPTIKDRFLTEVHALSQAHSLAVPHPQALAASETISFFQAIQASLRK-LE  828
              N+++YV       ++RF+  V  L++A +L   +P A   ++ I+FF+A++A+L K L+
Sbjct  754   SNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQ  813

Query  829   SSGDGGGLNNQ-DIETAIRQVVDQALVSDAVINIFDEAGIKNPDISIISAEFMAEVRGME  887
             ++ +G   +   ++E+ I Q+V Q++V++ VI++++  G+ +PD+SI+S +F+ +V G+ 
Sbjct  814   PPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLK  873

Query  888   HQNLAVELLQKLLKDEVKTRSRTNIVQSRKLSEMLEDALRRYRNQVISVTDVLEALLELA  947
             ++N+AVELL++LLK++VK+  +TN   S+++SEML +++ +Y ++ I  + V+E L++LA
Sbjct  874   QKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLA  933

Query  948   KDTKAADARGEELGLEPFELAFYDALSQNQSAQDIMGVDKLRELAIVLVERIRQNASIDW  1007
             KD K  + RG+ELGL++ E+AFYDAL+ +++A++ MG   LR +A  L   +++N ++DW
Sbjct  934   KDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDW  993

Query  1008  NLKESVRSRMKIAVKRLLRKYGYPPDMEALAMELVLEQAKVFTE  1051
             + ++S +++M++AV+RLL+KYGYPPD++ +A+E V+EQA + ++
Sbjct  994   SKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMAN  1037

80) Mpe_A0011 in NC_008825


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  815 bits (3086),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/1076 (46%), Positives = 763/1076 (71%), Gaps = 61/1076 (5%)

Query  2     TEDQLEQECLAWLADVGWQHRYGPDIAPDGDAPERDSYRQVLLLGRLRSAVAALNPTVPA  61
              ED+LEQ  L WL  +G + + G +I+  + +PER S ++V+L  RL  A+  +N+ + +
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDAIRQVLDLG-TPVLLAANRHFHRLLVGGVPVQ-YQQDGETRGDFVRLVDWSDPSR  119
                E A+++ L L  +P LL  N  FH  L+ G+ ++ Y+++G++  ++V+++D   P  
Sbjct  66    RFIEKALHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  120   NEWLAVNQFSVTGPHHTRRPDIVLFVNGLPLVLIELKNPADLNADVWKAFHQIQTYKAQI  179
             N+ LAVNQ+++   +  +RPDIVLF+NGLP+V+IELKN+++   +V  ++HQ++TYK +I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   PDIFQTNEVLVVSDGSEALLGSLSADSERFMAWRTIDGNTLDPLGKFHELQTLVRGALAP  239
             P++F  NEVLV SDG ++  GSL+A+ +RFM+WR+ DG+T  + G +  L+ L++G L P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPG-LASLDVLIHGMLNP  243

Query  240   AYLLDYLRYFVLFEDDG--QLAKKIAGYHQFHAVRAAIAQVVTASRPNSDARLRGKGGVV  297
               LLD +RYFVLF+DDG  +++K +A+YHQ+ AV  A+ + + AS  ++D    GKGGV+
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGD----GKGGVI  299

Query  298   WHTQGSGKSITMTCFAARVMQEPAMENPTIVVITDRNDLDGQLFGVF-----SLAQDLLR  352
             WHTQGSGKS+TM  F+++++Q   ++NPT+VV+TDRNDLD QL++ F       +++LLR
Sbjct  300   WHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLR  357

Query  353   EQPVQANTRQELRALLGNRPSGGIVFATIQKFMPGEDEDTFPLLSDRHNIVVMADEAHRT  412
             + P QA+TR+EL++LL+   SGGIVF+T+QKF P ++E T + L++R N++VMADEAHRT
Sbjct  358   QTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRT  416

Query  413   QYGFEAKLKTPKSALKASSELTTGNGQPPAHRAEFAPSAKYQVGYAQHLRDALPNATFVA  472
             QYGF+AK                G+G             KY  GYA+ LRDALPNATFV+
Sbjct  417   QYGFNAKYDD------------KGEG------------IKY--GYAKYLRDALPNATFVG  450

Query  473   FTGTPVSGEDRDTRAVFGDYISVYDMQQAKEDGATVAIYYESRLAKLGLKADEMATIdde  532
             FTGTPV++ D++T+ VFG+YI VYDM QA  DG+TV IYYESR+  L L   +   +D+ 
Sbjct  451   FTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNL--PQSLDLDEA  508

Query  533   vdelaedeeeSQQAKLKSRWAALEKVVGAAPRVAQVAADLVAHFEERNKAQTGKAMVVAM  592
              ++++ED+EE  + +LKS+W+ +E + GA PRV  +A D++ HFE R++A  GK+M+V+M
Sbjct  509   YNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTM  568

Query  593   SREICVHVYDEIVKLRPDWHSPDPEQGTIKIVMTGSASDKALLRPHIYSAQVKKRLEKRF  652
             SR I V++YDEI++L+P+WHS D ++G IK+VMTGS+SD + ++ HI + + ++ LEKR 
Sbjct  569   SRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRM  628

Query  653   KNPADPLRMVIVRDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVD  712
             K+  D L++VIVRDMWLTGFD P +HT+Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VD
Sbjct  629   KDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVD  688

Query  713   YIGIANELKSALKEYTAAQGRGRPTVDAHEAYSVLAEKLDALRGMLAGTNGHGFDYSGFL  772
             Y+GIA+ LK ALKEYT ++ +++ ++D++ A  ++  K D +++ML       +DYS F 
Sbjct  689   YVGIAESLKEALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDML-----YNLDYSKFN  742

Query  773   TGGHK----TLAGAANFVLGI-KEGKKRFADLALAMSKAFTLCCTLDEAKAVREEVAFFQ  827
             ++       T++ + ++V+G+  + ++RF      ++KAF+LC T   A+ + +E+AFF+
Sbjct  743   SDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFK  802

Query  828   AVKVILTK----RDISAQKKMDEQRELAIRQIISAAVVSEEVVDIFDAVGLDKPNIGILD  883
             AVK  L K       +  +K   + E  I Q++S +VV+E+V+D+++++GL++P+++IL 
Sbjct  803   AVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILS  862

Query  884   DAFLAEVRNLPERNLAVELLERLLEGEIKSRFAGNVVQNKKFSDMLADVVQRYQNRSIEA  943
             D FL +V  L ++N+AVELL+RLL G++KS    N   +K+FS+ML++ +++Y++RSIE+
Sbjct  863   DDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIET  922

Query  944   AQVMEELVQMAKKFRAAAARGEQLGLTEDEVRFYDALANNESAVRELNDETLKKIAHELA  1003
             ++V+EEL+Q+AK ++    RG++LGL  DE+ FYDALA++E+A   + D  L+ IAHEL+
Sbjct  923   SKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELT  982

Query  1004  ENLRKNLTVDWSARESVQAKLRLMVKRILRKYKYPPDQQDAAVELVLQQAKALGEA  1059
               ++ N+ VDWS R+S +AK+R+ V+R+L+KY YPPD Q  AVE V++QA  +++ 
Sbjct  983   KTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

81) Mhun_2781 in NC_007796


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  814 bits (3083),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 483/1032 (47%), Positives = 747/1032 (73%), Gaps = 20/1032 (1%)

Query  8     ESDVEETALDIFRDLGYEVLYGYEVAPGERDQIRNSFEEYLLGSRLEDAIFRLNKTLPCD  67
             E D+E+ AL+ ++ LGY+   G E++       R+S  + +L  RLE A+ ++N  +   
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  68    AHEAAQKILTNPGHTTLIQNNKTVHEMLSGGITVEYRRKDGSVGGDQVRLIDFEHPENNE  127
               E A   LT      L++NN T HE L  GI +E    +G    + V++IDFE P+NN+
Sbjct  67    FIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNND  126

Query  128   FLVVNQFTIQEGKNHRRPDIVLFINGIPVIIFELKNPTDERATLTIAHNQLQTYMQEIPS  187
             FL VNQ+TI +G   +RPDIVLFING+P++++ELKN+T+E   +  + +QL+TY   IP 
Sbjct  127   FLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  188   FFSYNTMAIISDGIQTRIGTLSASLERFSRWRTIDGAQEAPNHIPEIEVLIRGVCNKKRL  247
             +F++N + + SDGI+T+ G+L+A+ +RF  WR+ DG  E++  ++ ++VLI+G+ N   L
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETL  246

Query  248   LDLIRFFIVFEEDERGNTIKKLAGYHQYHAVNLAVRSTETAISDVGDRRCGVVWHTQGSG  307
             LDLIR+F++F++D +G+  K LA+YHQY AVN AV  +  A S+ GD + GV+WHTQGSG
Sbjct  247   LDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSG  306

Query  308   KSLTMVFYSGKIIQTPSLQNPTILVITDRNDLDDQLFGTFSRC-----RKLLRQTPIQAE  362
             KSLTMVF+SGK+IQ   L+NPT++V+TDRNDLD+QL++TF +      + LLRQTP QAE
Sbjct  307   KSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAE  364

Query  363   GRDHLKTLLSVASGGVVFTTIQKFFPEDENKETYPLLSDRKNIIVIADEAHRSQYGMHGK  422
              R +LK+LLSV SGG+VFTT+QKF PE+++  T + L++RKN+IV+ADEAHR+QYG ++K
Sbjct  365   TRKELKSLLSVESGGIVFTTMQKFEPEQNET-TMAALTERKNVIVMADEAHRTQYGFNAK  423

Query  423   VSKKGE-ISYGFAKYIRDALPNASFIGFTGTPIDLQDKVTRNVFGEYISVYDIQQAIKDK  481
                KGE I YG+AKY+RDALPNA+F+GFTGTP+   DK T+ VFG+YI VYD+ QA+ D 
Sbjct  424   YDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADG  483

Query  482   ATVPIYYESRIVDIRMNEQIKPLIDQefeevteneevirkeKLRTKWAALEAIVGDEKRI  541
             +TV IYYESR++ + + + +   +D+ ++++TE++E   K++L++KW+ +EA+ G   R+
Sbjct  484   STVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRV  541

Query  542   NEVADDLIRHFKQRSDAIEGKAMIVCMSRRICVELYKALVERQPDWDSHSDNEGFLKVIM  601
             + +A D+I+HF  R +A+ GK+MIV MSRRI V+LY  ++  +P+W+S+ D+ G +KV+M
Sbjct  542   EALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVM  601

Query  602   TGSAGDEKDFQKHIRPKSGRELLAKRFKDPEDPFKIAIVRDMWLTGFDVPCLHTMYIDKP  661
             TGS++D   FQ+HI PK  R+LL KR KD +D +++ IVRDMWLTGFDVP +HTMYIDKP
Sbjct  602   TGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKP  661

Query  662   MKGHTLMQAIARVNRVWRDKPGGLIVDYIGLAEELKKALVTYTESKGKGDPVFDQERIVD  721
             MKGH LMQAIARVNRV +DKPGGLIVDY+G+AE LK AL  YTES ++++  +D ++ V+
Sbjct  662   MKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVE  720

Query  722   KMMEKYEVCCHLFHGFDWSGWRGAPAATRLSILQAGFNYV--LDDPERKSDFMQHVLELS  779
              M+ KY+V  +++  +D S   +   + R   +    +YV  L++ ER+  F++ V EL+
Sbjct  721   LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQR-FIKTVTELG  779

Query  780   QAFALALPHEKAIEIREDVAYFQAVRAQIIK----TSEGAG-KSEYELNLAVKQIVSKSI  834
             +AFAL   +  A E+ +++A+F+AV+A ++K      EG   K+  E++  ++Q+VS+S+
Sbjct  780   KAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSV  839

Query  835   VPLGIVDIFKEMGKDVGDISVLSEEFLNDLLKYKNQNVAIAAMTRLLNDQIRARTRKNTT  894
             V  +++D+++ +G +  D+S+LS++FL+D+   K++NVA+  + RLL++Q+++  + N+T
Sbjct  840   VTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNAT  899

Query  895   EARKFSEMLEQTINKYNNRKVTTQEILKELAQIAREIREAQQRGEDLGLTEAELAFYDAL  954
              +++FSEML ++INKYN+R + T  ++ EL Q+A++I++ QQRG++LGL   E+AFYDAL
Sbjct  900   VSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL  959

Query  955   GVNDSAVVILGDDILKKIAQDLVKTIRENVTIDWSSRESVRAKMRVAIKRILRVNGYPPD  1014
             + +++A   +GD  L+ IA++L KT++EN+ +DWS R+S +AKMRVA++R+L+  GYPPD
Sbjct  960   ASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPD  1019

Query  1015  KQENAIQTVMQP  1026
              Q  A++ V++ 
Sbjct  1020  LQKMAVEQVVEQ  1031

82) R2APBS1_3887 in NC_020541


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  814 bits (3083),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/1074 (46%), Positives = 763/1074 (72%), Gaps = 59/1074 (5%)

Query  7     EDHLEQAALQWLAGLGWEVAHGPDISPPDAHTPGSERDSYRQVVLEHRLRDAIRRLNPRI  66
             ED+LEQ AL+WL +LG +   G +IS     +  +ER S ++VVL++RL  A+R++N+ I
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMT---SLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  67    PATAQDEALRIVLNPNIPGPLQANRQLHRWLTEGVPVQ-FQQGNETrgdlvrlvdfddvr  125
              +   + AL+ +   + P  L+ N  +H  L +G+ ++ +++  ++  ++V+++DF+  +
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  126   gNDWVAVNQFSIQGPKRTRRPDLLLFLNGLPIVLLELKNPGDENADIWSAFNQVQAYRED  185
              ND +AVNQ++I      +RPD++LF+NGLPIV++ELKN+ +E  ++  +++Q+++Y+  
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  186   IPDLFIYNTLVVISDGIRARMGSLSAERERYMAWRTIDGAQTDPLGEMRELETLVHGAFD  245
             IP+LF +N ++V SDGI ++ GSL+A+ +R+M+WR+ DG QT++   +  L+ L+HG ++
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG-QTESSPGLASLDVLIHGMLN  242

Query  246   RALLLAYLRNFILFEDDGA--LVKKVAGYHQFHAVRAVVESVLAASKPGGSRKGGVVWHT  303
                LL  +R F+LF+DDG   + K +A+YHQ+ AV   V+  L AS   G  KGGV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  304   QGAGKSIEMTCLAGTLMQHPAMGNPTIVVVTDRNDLDNQLFGVFA-----GVADLLRETP  358
             QG+GKS+ M  ++G L+Q   + NPT+VVVTDRNDLDNQL++ F      +  +LLR+TP
Sbjct  303   QGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  359   VQADTRPRLRELLGNRPSGGIIFTTIQKFTPGEDEDVFPVLSERQNIVVICDEAHRTQYG  418
              QA+TR  L+ LL+   SGGI+FTT+QKF P ++E   + L+ER+N++V+ DEAHRTQYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  419   FEAKLTGDLakakpakmaadaagsvamaalmSHEASASYASSVRYGYAQHLRDALPNATF  478
             F+AK  +                                + +++YGYA+ LRDALPNATF
Sbjct  420   FNAKYDDK-------------------------------GEGIKYGYAKYLRDALPNATF  448

Query  479   VAFTGTPVSLTDRDTRAVFGDYVHVYDIEQAVKDGATVPIYYESRLAKLELSDGDIDALD  538
             V+FTGTPV+ TD++T+ VFG+Y++VYD+ QAV DG+TV IYYESR+  L+L+++ +D LD
Sbjct  449   VGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LD  506

Query  539   EEVDELNEGAIDDPSHAARIRRWAALEKVVGAAPRIQKVASDIVEHFENRLAAMDGKAMI  598
             E  +++ E+  +D  +  +  +W+ +E + GA PR++ +A DI++HFE R  AM GK+MI
Sbjct  507   EAYNDITEDQEEDVKQRLK-SKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMI  565

Query  599   VAMSREICVHLYDAIVALRPEWHAADPEKGVIKIVMTGSAADKPMLKPHVYPKETRKRLE  658
             V+MSR I V+LYD I+ L+PEWH+ D +KGVIK+VMTGS++D   ++ H+ PK  R+ LE
Sbjct  566   VTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLE  625

Query  659   RRYKDSADPFKLVIVRDMWLTGFDAPCLHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGL  718
             +R KD  D ++LVIVRDMWLTGFD P +HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL
Sbjct  626   KRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGL  685

Query  719   VVDYIGIANELKQALADYTQAKGRGSPTIDAEEALEVLVERMELLHGMLHGYDYAAF---  775
             +VDY+GIA+ LK+AL +YT++ +++  +ID++ A+E+++ + +++++ML   DY+ F   
Sbjct  686   IVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSD  744

Query  776   -RAQAWALLPGAANHVLGL-DDGKQRFADQVLAATKAFALCCTLDAALAYRDELAFLQAI  833
              +++    ++ + + V+GL +D +QRF   V    KAFALC T  +A    DE+AF++A+
Sbjct  745   KKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAV  804

Query  834   KSAITK--HATTDKKL--SDEQKEHALRQIISRAVVSDQVIDIFAAAGLKRPDIGVLSEE  889
             K+++ K  ++  + K   +  + E  + Q++S++VV+++VID++ + GL +PD+++LS++
Sbjct  805   KAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDD  864

Query  890   FLQDMRHMKERNLAVELLDRLLKGEIKSRFKTNVVQSAKFSELLQASLTRYRNRAIETAQ  949
             FL+D+  +K++N+AVELL+RLLKG++KS  KTN   S +FSE+L  S+ +Y +R+IET++
Sbjct  865   FLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSK  924

Query  950   VIEELIAMAKKFQQAAEHGDALGLNRDEVAFYDALANNESAVRELGDETLRKIAVELTQK  1009
             VIEELI +AK ++Q  ++G+ LGLN DE+AFYDALA++E+A   +GD  LR IA ELT+ 
Sbjct  925   VIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKT  984

Query  1010  LRNSVTVDWAVRDSVRAKLRVMVKTLLRRYKYPPDKQDEAVEIVLRQAETLTNT  1063
             +++++ VDW+ RDS +AK+RV V+ LL++Y YPPD Q  AVE V+ QAE ++N 
Sbjct  985   VKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

83) Acav_4671 in NC_015138


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  813 bits (3079),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 495/1081 (46%), Positives = 764/1081 (71%), Gaps = 66/1081 (6%)

Query  2     TEDQLEQDALSWLVEVGYTHLSGYDIAPDGPAPERDSFRQVLLPQRLRDAIARLNPHIPL  61
              ED+LEQ AL WL  +GY    G +I+  + +PER S ++V+L +RL  A+ ++N++I  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDAFKQVQDLGTPVLLSANRHFHRLLVGGVPVQ-YQQDGETRGDFVRLVDWGNAQAN  120
                E A+ ++    +P LL  N  FH  L+ G+ ++ Y+++G++  ++V+++D   +Q N
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  121   EWLAVNQFSLKGPHHTRRPDIILFLNGLPVVLLELKNPADENASIWKAYEQIQTYKAQIP  180
             + LAVNQ+++   +  +RPDI+LF+NGLP+V++ELKN+++E  ++  +Y+Q++TYK +IP
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DVFQYNEVLVVSDGSEALMGSLSSNAERFMAWRTIDGVALDPLGQFNELETLVRGALAPA  240
             ++F +NEVLV SDG ++  GSL++N +RFM+WR+ DG + ++   +  L+ L++G L P 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQT-ESSPGLASLDVLIHGMLNPE  244

Query  241   YVLDYLRYFVLFEDDG-GLVKKI-AGYHQFHAVRAAIEQVVAASRPSGSHKGGVVWHTQG  298
              +LD +RYFVLF+DDG G + KI A+YHQ+ AV  A+++ + AS   G  KGGV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQG  304

Query  299   SGKSITMTCFAARVMQEPAMQNPTIVVITDRNDLDGQLFGVF-----SLAQDLLREQPVQ  353
             SGKS+TM  F+++++Q   ++NPT+VV+TDRNDLD QL++ F       +++LLR+ P Q
Sbjct  305   SGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  354   VETRQDLRAKLANRPSGGIVFATIQKFMPGEDEDTFPVLSNRSNIVVIADEAHRTQYGFE  413
              ETR++L++ L+   SGGIVF+T+QKF P ++E T + L++R N++V+ADEAHRTQYGF+
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFN  421

Query  414   AKLKTIRRKAGQPEgaatarttgdaassaLTVDFVPPAYEVEHKYQAGYAQHLRDALPHA  473
             AK     +  G                                KY  GYA+ LRDALP+A
Sbjct  422   AKYDD--KGEGI-------------------------------KY--GYAKYLRDALPNA  446

Query  474   TFVAFTGTPVSSEDRDTRAVFGDYIHVYDMQQAKEDGATVAIYYESRLAKLSLKQDELPH  533
             TFV+FTGTPV+S D++T+ VFG+YI+VYDM QA  DG+TV IYYESR+  L+L Q    +
Sbjct  447   TFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LD  504

Query  534   LdeevdelaedeeeSTQARLKSRWAALEKVVGAEPRVAAVAADLVKHFEERNKAQSGKAM  593
             LDE  ++++ED+EE  + RLKS+W+ +E + GA PRV A+A D+++HFE R++A  GK+M
Sbjct  505   LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGM  564

Query  594   VVAMSRDICVHLYDEITRLRPGWHDADPEKGAVKIVMTGSASDKALLRPHIYGGQVKKR-  652
             +V+MSR I V+LYDEI RL+P WH  D +KG +K+VMTGS+SD + ++ HI  G  K+R 
Sbjct  565   IVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHI--GPKKRRN  622

Query  653   -LEKRFKDPADPLRLVIVRDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQ  711
              LEKR KD  D L+LVIVRDMWLTGFD P +HT+Y+DKPMKGHNLMQAIARVNRVFKDK 
Sbjct  623   LLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKP  682

Query  712   GGLVVDYIGIGNELKAAMKEYTASKGRGKPTVDAHEAYAVLEEKLDVLRAMLHGFDYSGF  771
             GGL+VDY+GI++ LK A+KEYT S ++++ ++D++ A  ++  K DV++ ML  +DYS F
Sbjct  683   GGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKF  741

Query  772   LTGGHK----VLAGAANHVLGLKSEGRRDGKKRFADTALAMSKAFTLCCTLDEAKAVREE  827
              ++        ++ + + V+GL  + R+    RF  T   ++KAF+LC T   A+ + +E
Sbjct  742   NSDKKSERYYTISNTMDYVIGLGEDERQ----RFIKTVTELGKAFALCATEPTAQELNDE  797

Query  828   VAFMQAVKV----ILtkkditqqkktdEQRELAIRQIIGSAVVSDRVVDIFDAVGLDKPN  883
             +AF +AVK     +L      + +KT  + E  I Q+++ +VV++ V+D+++++GL++P+
Sbjct  798   IAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPD  857

Query  884   IGLLDDDFLAQVKNLPERNLAVELLERLLEGEIKSRFATNVVQERKFSELLGNVIKRYQN  943
             +++L DDFL +V  L ++N+AVELL+RLL G++KS   TN    ++FSE+LGN I++Y++
Sbjct  858   LSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNS  917

Query  944   RSIETAQVMEELVEMARKFREAASRGESLGLTDDEVKFYDALILNESAARELSDETLKKI  1003
             RSIET++V+EEL+++A+ +++   RG+ LGL  DE+ FYDAL  +E+A   ++D  L+ I
Sbjct  918   RSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAI  977

Query  1004  AHELTTSLRQNISVDWAHRESVRAKLRLMVKRILRKYKYPPDLADAAVELVLEQAETIGD  1063
             AHELT ++++N++VDW+ R+S +AK+R+ V+R+L+KY YPPDL   AVE V+EQAE +++
Sbjct  978   AHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMAN  1037

Query  1064  E  1064
             +
Sbjct  1038  N  1038

84) CFSAN002050_05875 in NC_021818


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  813 bits (3076),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 484/1056 (46%), Positives = 759/1056 (72%), Gaps = 39/1056 (3%)

Query  2     LSEDDLEQQCLQWFAEQGWEVLHGPDIAPDGDNPLRASFHDVFLRPVMLEQLQTINPHIP  61
             ++EDDLEQ  L+W+   G +   G +I+  +  P R S  DV L+  +   L+ IN++I 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    ISVLEEVIQRIAHAHSPDLVVSNKAFHHLLLNGVPVE-YKHEDKVIHDNALLMDFNHPDN  120
                +E  ++ ++   SP+L+ +N +FH+ L+NG+ +E Y +E++ I +   ++DF+ P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  121   NRFMVVNQVAIQGIKQVRRPDVIGYINGLPVAVIELKSPVDANADIWAAFNQLQTYKNEL  180
             N F+ VNQ++I      +RPD++ +INGLP+ VIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEALVVSDGQNARVGSLTADEERFLPWKTVANENDKPQFDWQLKTVVQGFFNRA  240
             ++LF  NE LV SDG N++ GSLTA+ +RF+ W++   + + +     L  +++G +N  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  241   LLLDYIRYFVLFENDGKRLIKKI-AAYHQFHAVREAVAATIVASTGKHLPLHSNIQPGSK  299
              LLD IRYFVLF++DGK  I KI AAYHQ+ AV  AV  +++AS+          + G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASS----------EQGDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+VVVTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   QDLLKQTPLQANDRDELRELLNARESGGIIFTTVQKFAPLDGEQSHPALNQRSNIVVISD  414
             ++LL+QTP QA+ R EL+ LL+  ESGGI+FTT+QKF P + E + +AL +R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLSATLDRQTGVYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYV  474
             EAHR+QYG++A  D +    KYGYAK +RDALPNA+F+GFTGTP+AS DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELETLSDQVDELVEDEETGQQEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L +  +++ ED+E + +++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSEPRIQQVAADLVQHFETRNTAMNGKAMIVAMSREICVKLYDAIVVIRPEWHS  594
             R+E L G+ PR++ +A D++QHFETR+ AM+GK+MIV+MSR I V LYD I+ ++PEWHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EDVEQGAIKVIMTGSASDKDHLQSHIYNKQTKKRLEARFKDLNDPLKLVIVRDMWLTGFD  654
             +D ++G IKV+MTGS+SD   +Q HI  K+ ++ LE R KD++D L+LVIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVF+DKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTVDAREAFAILLEKMDVIHGMFARSAGKPGFDYTGFSRDPLA--F--LRDAVNYILG  770
             +QT++D+  A  ++L K DVI++M+        +DY+ F+ D  +  +  + ++++Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLY------NLDYSKFNSDKKSERYYTISNTMDYVIG  762

Query  771   L-DDGKKRYLDVSLAMSKAWSLCNTLDEAEPLQEEFAFLSAIRVGLIKL-----DPKAKF  824
             L +D ++R++     ++KA +LC T   A+ L++E+AF+ A++ GL+KL     + K++ 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  825   SQSEKNSLLSKILDNAVVATGVEDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884
             + +E ++ +++++ ++VV+ +V DV+   GL++P++++LSD+FL +V  + Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  885   EKLLNDGIHARSGNNVVQQKKYSDRLKAVLLKYNNRAIETAQVIEELIQMAKAFQDAMAR  944
             ++LL++ + +    N    K++S+ L   + KYN+R+IET++VIEELIQ+AK +++   R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  945   DDALGLNPDEIAFYDALAENESAVRELGDDTLRKLAIEVTRQLRKSTTVDWQVRDSVRAR  1004
             ++ LGLN+DEIAFYDALA +E+A   +GD  LR +A E+T+ ++ +  VDW  RDS +A+
Sbjct  943   GNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAK  1002

Query  1005  LRVLVRQTLRKYKYPPDKTAGAVELILKQAEVISNH  1040
             +RV VR+ L+KY YPPD    AVE ++ QAE+++N+
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

85) Bcep1808_0004 in NC_009256


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  812 bits (3075),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 490/1050 (47%), Positives = 748/1050 (72%), Gaps = 37/1050 (3%)

Query  4     ISEDAVEQAMLEWLANLGWQTAHGPDVSPPDAKTPGTERNSYRDVALRHRLAAAIAKLNP  63
             ++ED +EQ  LEWL +LG +   G ++S     +   ER+S +DV L++RL  A+ K+N+
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMT---SLTPERKSDKDVVLHERLEKALRKINS  61

Query  64    QIPAVarddalrralNPNTPGHVNANRQLYRWLVDGVPVE-FQKDGETRGDRVRLVDFTD  122
             +I +   + AL+     ++P  ++ N  +   L++G+ +E ++ +G++  + V+++DF  
Sbjct  62    DIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEY  121

Query  123   IAANDWLAVNQLAFQGPKQLRRPDVVLYLNGLPIVVVELKNPGDENADIWAAWNQLQTYH  182
                ND LAVNQL++      +RPD+VL++NGLPIVV+ELKN+ +E  ++  + +QL+TY 
Sbjct  122   PQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  183   QDIPDLFNANVLEVISDGTTARMGSLTSNKERFLAWCTIDGNEIDPLGAMRELETLTRGL  242
               IP+LF  N + V SDG  ++ GSLT+N +RF++W + DG + ++  ++  L+ L +G+
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG-QTESSPGLASLDVLIHGM  240

Query  243   FRRDYLLEYLRHFILFEDDG--QLIKKVAAYHQFHAVRAVVQSVLQASAPGGSRKGGVVW  300
             +  + LL+ +R F+LF+DDG  ++ K +AAYHQ+ AV   V+  L AS+  G  KGGV+W
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  301   HTQGAGKSIEMTCLAGALMAHEDMGNPTLVVVTDRNDLDNQLFGVFA-----GAKELLRE  355
             HTQG+GKS+ M  ++G L+  + + NPTLVVVTDRNDLDNQL++ F      ++K LLR+
Sbjct  301   HTQGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  356   TPVQADTRPELRRLLANRPSGGIIFTTIQKFTPGTDEDTFPVLSSRRNIVVICDEAHRSQ  415
             TP QA+TR EL+ LL+   SGGI+FTT+QKF P  +E T + L+ R+N++V+ DEAHR+Q
Sbjct  359   TPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQ  417

Query  416   YGFDARLPITDCKGESTAVRYGYAQYLRDALPEATFVAFTGTPVSLDDRDTRAVFGDYVH  475
             YGF+A+       + + +++YGYA+YLRDALP+ATFV+FTGTPV+  D++T+ VFG+Y++
Sbjct  418   YGFNAK-----YDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYID  472

Query  476   IYDIEQAVKDGATVPIYYESRLASLELKEGDASILddevdeltedeendeAKVATLR-RW  534
             +YD+ QAV DG+TV IYYESR+ +L+L ++    LD +       E+++E     L+ +W
Sbjct  473   VYDMTQAVADGSTVKIYYESRVIPLNLPQS----LDLDEAYNDITEDQEEDVKQRLKSKW  528

Query  535   AALEKIVGAPPRIQKVAADIVSHFENRQAVMDGKAMIVAMSRDICVHLYNAITQLRPEWH  594
             + +E + GA PR++ +A DI+ HFE RQ  M GK+MIV+MSR I V+LY+ I +L+PEWH
Sbjct  529   SRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWH  588

Query  595   SDDSTQGAIKIVMTGSASDKAMLKPHIYSKKVRDDLEKRFKDPSDPFKLVIVRDMWLTGF  654
             SDD  +G IK+VMTGS+SD + ++ HI +KK R+ LEKR KD  D ++LVIVRDMWLTGF
Sbjct  589   SDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGF  648

Query  655   DAPCMHTMYIDKPMRGHSLMQAIARVNRVFKDKPGGLVVDYIGIANELKAALATYTQARG  714
             D P MHTMYIDKPM+GH+LMQAIARVNRVFKDKPGGL+VDY+GIA+ LK AL  YT++ +
Sbjct  649   DVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-D  707

Query  715   RGRPTIDAREALAVLAEKIDVLHNMLHGVDYAAF----RSQAWQLLPAVANHVLG-QDDG  769
             +++ +ID+  A+ ++  K DV+++ML  +DY+ F    +S+    ++   + V+G  +D 
Sbjct  708   QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDE  767

Query  770   KKRFADTVLAASKAFALCCTLAEALAYRDELAFLQAVKAALIK-----HDGADKALTDEQ  824
             ++RF  TV   +KAFALC T + A    DE+AF++AVKA+L+K      +G  +  T  +
Sbjct  768   RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK-TPAE  826

Query  825   KEHALRQIISRAVVSDQVIDVFSAAGLKRPDISVLSDGFLEDVRHMQQRNLAVELLERLL  884
              E  + Q++S++VV+++VIDV+ + GL +PD+S+LSD+FL DV  ++Q+N+AVELL+RLL
Sbjct  827   VEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLL  886

Query  885   RDQIKSRFKTNVVQSAKFSELLQQSLTRYRNRAVETAQVIEELIAMAKKFQVEAQRGMEL  944
             ++Q+KS  KTN   S +FSE+L +S+ +Y +R++ET++VIEELI +AK ++ E QRG EL
Sbjct  887   KGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNEL  946

Query  945   GLSPDEMAFYDALATNEAAVRELGDDTLKKIAVELVVKLRGSVTVDWSKRETVRARLRVM  1004
             GL++DE+AFYDALA++E+A   +GD  L+ IA EL   ++ ++ VDWSKR++ +A++RV 
Sbjct  947   GLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVA  1006

Query  1005  VKTLLKRYKYPPDRQEEATDTVLSQAESLS  1034
             V+ LLK+Y YPPD Q  A + V+ QAE ++
Sbjct  1007  VRRLLKKYGYPPDLQKMAVEQVVEQAELMA  1036

86) Sputcn32_2912 in NC_009438


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  812 bits (3074),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 485/1058 (46%), Positives = 767/1058 (73%), Gaps = 42/1058 (3%)

Query  2     TEDQLEQEALGWLGEIGYTHICGYDIAPDGANPERQDYRQPLLLERLRSAIARLNPQIPQ  61
              ED+LEQ AL WL  +GY    G +I+  +  PER+  ++ +L ERL  A+ ++N++I  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    QAREDALASVMDLRIPSLLSANRHFHGVLVNGVPV-SYQKDGETRGDFVRLIDWENRPGT  120
             +  E AL  +   + P+LL  N  FH  L+NG+ +  Y+ +G++  ++V++ID E  P  
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEY-PQN  124

Query  121   NEFLAVNQYTLKGPHHSRRPDIILFINGLPLVLFELKNPADEHADIWKAYDQIQTYKEQV  180
             N+FLAVNQ T+   +  +RPDI+LFINGLP+V++ELKN+++E  ++  +Y+Q++TYK ++
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   PDVFQYNEILVISDGTEARMGSLSANAERYMQWRTIDGVNLDPLGAFGELETMVRGVFAP  240
             P++F +NE+LV SDG +++ GSL+AN +R+M WR+ DG + ++  +++ L+ +++G++ P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG-QTESSPGLASLDVLIHGMLNP  243

Query  241   AYLLDYLRFFVLFEDDG--QLVKKIAGYHQFHAVRSAITQVVTASRPDVMGSNKGKGGVV  298
               LLD +R+FVLF+DDG  ++ K +A+YHQ+ AV  A+ + + AS  +      GKGGV+
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQ----GDGKGGVI  299

Query  299   WHTQGSGKSITMTCFAARVMREAAMENPTIVVITDRNDLDGQLFGVF-----SLAQDLLR  353
             WHTQGSGKS+TM  F++++++   ++NPT+VV+TDRNDLD QL++ F       +++LLR
Sbjct  300   WHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLR  357

Query  354   EQPVQVETRQDLRAKLANRPSGGIIFATIQKFAPGADEDVFPILSDRHNIVVVADEAHRT  413
             + P Q ETR++L++ L+   SGGI+F+T+QKF P  +E   + L++R N++V+ADEAHRT
Sbjct  358   QTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRT  416

Query  414   QYGFEAKLKVPELNAGVAEASAAYHSRYQVGFAQHLRDALPNATFVAFTGTPVSSEDRDT  473
             QYGF+AK    +   G+         +Y  G+A+ LRDALPNATFV+FTGTPV+S D++T
Sbjct  417   QYGFNAKYD--DKGEGI---------KY--GYAKYLRDALPNATFVGFTGTPVASTDKNT  463

Query  474   RAVFGDYIHIYDMQQAKEDGATVAIYYESRLAklklkeeelPHIddevdelaedeeeeQQ  533
             + VFG+YI++YDM QA  DG+TV IYYESR+  L+L +    ++D+  ++++ED+EE+ +
Sbjct  464   QMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVK  521

Query  534   SKLKSKWSALEKIVGAEPRIVKVAADLVAHFEARQQAQTGKAMVVAMSREICVHLYNAIC  593
              +LKSKWS +E + GA PR+  +A D++ HFE+RQQA  GK+M+V+MSR I V+LY+ I 
Sbjct  522   QRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEII  581

Query  594   ALRPDWHDDDPEKGAIKIVMTGSSSDKPLLRPHIHSKQVKKRLEKRFKDPKDPLQIVIVR  653
              L+P+WH DD +KG IK+VMTGSSSD   ++ HI +K+ ++ LEKR KD  D LQ+VIVR
Sbjct  582   RLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVR  641

Query  654   DMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFRDKQGGLVVDYIGIANELKSALK  713
             DMWLTGFD P +HT+Y+DKPMKGHNLMQAIARVNRVF+DK GGL+VDY+GIA+ LK ALK
Sbjct  642   DMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALK  701

Query  714   EYTASNGRGRPTVDAAEAWSLLEEKLDILRSLLHGFDYSDFTKGGHK----LLAGAANHI  769
             EYT S+ +++ ++D+  A  L+  K D+++ +L  +DYS F  +        ++ + + +
Sbjct  702   EYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYV  760

Query  770   LGV-EDGKKRFADNALAMSKAFSLCCTLDEAKAVREEVAFLQAVKV----LLTKRDLSAK  824
             +G+ ED ++RF      ++KAF+LC T   A+ + +E+AF++AVK     LL     +  
Sbjct  761   IGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKT  820

Query  825   KRSDEEKDIAIRQIISQAVVSDEVVDIFDAVGLEKPNIGLLDDEFLAEVRNLPEKNLAVE  884
             +++  E +  I Q++SQ+VV+++V+D+++++GLE+P++++L D+FL +V  L +KN+AVE
Sbjct  821   RKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVE  880

Query  885   LLERLLEGEIKSRFASNVIQQKKFSELLSNVVKRYQNRSIETAQVMEELVDMAKKFREAA  944
             LL+RLL G++KS   +N    K+FSE+L+N +++Y++RSIET++V+EEL+++AK +++  
Sbjct  881   LLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQ  940

Query  945   KRGESLGLSDDEVKFYDalanneaavlelGDEILKKIAHELTDNLRANISVDWSQRESVR  1004
             +RG+ LGL+ DE+ FYDALA++E+A   +GD  L+ IAHELT  ++ N++VDWS+R+S +
Sbjct  941   QRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAK  1000

Query  1005  AKLRIMVKRILRKYKYPPDQADGAVQLVLQQAEALGEQ  1042
             AK+R+ V+R+L+KY YPPD    AV+ V++QAE ++++
Sbjct  1001  AKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

87) hsdR in NC_008384


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  811 bits (3072),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 488/1038 (48%), Positives = 760/1038 (74%), Gaps = 32/1038 (3%)

Query  29    FQALGYLYQPSQVISPDGSAPARLAYGDVLLSDMLAAAVERLNPDIPADACEQAIRQLSI  88
             +Q+LGY Y+ ++ IS  + +P R +  DV+L + L  A+ ++N+DI +   E+A+++L++
Sbjct  18    LQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTL  77

Query  89    TETPSLVEENRRIHRLITEGVDVE-FGIGDGEVKGDKVWLIDFEHPEKNEFLVTNQFTLA  147
               +P+L+E+N  +H  + +G+++E ++ ++G+   + V +IDFE P++N+FL  NQ+T+ 
Sbjct  78    EKSPNLLENNLTFHENLINGIEIEDYD-DEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIV  136

Query  148   EGKHTRRPDVMVFVNGLPLGIIELKNAASKTATIDQAYQQLQTYKEQIPSLFRTNAVLVA  207
             +G   +RPD+++F+NGLP+ +IELKN+++ T  ++++Y+QL+TYK +IP LF  N VLV+
Sbjct  137   NGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVT  196

Query  208   SDGMLARIGSLTADEERFMPWRSVTGADGDFTPHGPYEMDTLLRGVFNKERFLALIRDFT  267
             SDG+ ++ GSLTA+ +RFM WRS  G     ++ G   +D L++G++N E +L LIR F 
Sbjct  197   SDGINTKAGSLTANYDRFMTWRSKDGQTE--SSPGLASLDVLIHGMLNPETLLDLIRYFV  254

Query  268   VFGDRGEGPF-KIIAGYHQFHGARKAITSAIEAVKPEGDRKIGVIWHTQGSGKSLLMAFL  326
             +F D G G + KI+A+YHQ+ +  KA+  A+ A   +GD K GVIWHTQGSGKSL M F+
Sbjct  255   LFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFF  314

Query  327   GGLIVRSRELENPTLIVLTDRNDLDDQLFGTFSLCKD-----LIRQTPEQADSRDDLRKL  381
             +G +++   L+NPTL+V+TDRNDLD+QL++TF   K+     L+RQTP QA++R +L+ L
Sbjct  315   SGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSL  372

Query  382   LNRASGGVIFTTVQKFTPEKGEEVFPVLTERRNVIVMADEAHRSQYGFDAKLNRETGERR  441
             L+  SGG++FTT+QKF PE+ E   + LTER+NVIVMADEAHR+QYGF+AK +      +
Sbjct  373   LSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIK  432

Query  442   YGYAHHIRQALPNASFMGFTGTPIEATDVNTPAIFGEYIDIYDISRAVEDGATVPIYYES  501
             YGYA  +R+ALPNA+F+GFTGTP+ +TD NT  +FG+YID+YD+++AV DG+TV IYYES
Sbjct  433   YGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYES  492

Query  502   RLARIELNEDEKPKIDAAIEAMLEDEALTEQEKQKAQWTTVERLVGAEKRLKQIAADLVA  561
             R+  ++L +     +D A + + ED+    +++ K++W+ +E L GA  R+  +A D++ 
Sbjct  493   RVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQ  550

Query  562   HLQRRIEGLPGKAMVVCMSRRICVDLYEEIVALRPEWHSDDDDKGAIKIVMTGSASDPLD  621
             H++ R +++ GK+M+V MSRRI VDLY+EI+ L+PEWHSDDDDKG IK+VMTGS+SDP  
Sbjct  551   HFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTS  610

Query  622   WQPHIGNkrrrddlakrarkVEDPLKLVIVRDMWLTGFDAPCMHTMYVDKPMRGHGLMQA  681
              Q HIG K+RR+ L KR + V+D L+LVIVRDMWLTGFD P MHTMY+DKPM+GH LMQA
Sbjct  611   FQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQA  670

Query  682   IARVNRVFKEKPGGLVVDYIGIATNLKKALAQYSQSDRDKTGIDEEQAVALLLEKYEIVR  741
             IARVNRVFK+KPGGL+VDY+GIA +LK AL +Y++SD+ +T+ID ++AV L+L KY++++
Sbjct  671   IARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQ  730

Query  742   GMFAGHDYSLGISGKPFERLRALADGIDWILKWQQAEAAKVDSQEAKKRAHRRYQDAVle  801
             +M+   DYS   S+K  ER  ++++ +D ++   + E             ++R+  +V E
Sbjct  731   DMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDE-------------RQRFIKTVTE  777

Query  802   lskayalasasddaaeIRDEVGFFQAVRAALVKTTATGKISDRAKSLA-----VEQLLNQ  856
             L+KA+AL ++   A E+ DE++FF+AV+A+LVK     K +   K+ A     ++QL++Q
Sbjct  778   LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  857   AVANAEIVDILKAAGLDSPDISVLSDQFLADIQKMekknlalealkkllnGEIKSRSKSN  916
             +V   +++D+ ++ GL+ PD+S+LSD+FL D++ + +KN+A+E L++LL+G++KS  K+N
Sbjct  838   SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  917   VVEAKTFSRRLEEAVARYHANAISTVEMIQELIALAKEMQAASARGEEMGLTPEEIAFYD  976
                +K FS  L +++ +Y++ +I T  +I+ELI LAK+++    RG+E+GL ++EIAFYD
Sbjct  898   ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYD  957

Query  977   ALAGNDSAVEAMGSEQLRVIAHELVEQMRGSVTVDWQHKASARAKMRILVKRILKRFGYP  1036
             ALA++++A EAMG  +LR IAHEL   ++ ++ VDW  + SA+AKMR+ V+R+LK++GYP
Sbjct  958   ALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYP  1017

Query  1037  PDLEQEAVQTVLAQAELL  1054
             PDL++ AV+ V+ QAEL+
Sbjct  1018  PDLQKMAVEQVVEQAELM  1035

88) SCE1572_29155 in NC_021658


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 484/1023 (48%), Positives = 753/1023 (74%), Gaps = 21/1023 (2%)

Query  11    TESDVEELALQTFARLGYECLHGPDIAPGEPAAERATYADVVLRGRLDEALRRLNPGVPQ  70
              E D+E++AL+ +  LGY+   G +I+    ++ER +  DVVL+ RL+ ALR++N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  71    TAIHEALRKILVPDAPSLLQNNRRFHRLLRDGVEVEIATPGGEVRGERLRLFDFDDIEEN  130
               I+ AL+ + +  +P+LL+NN  FH  L +G+E+E     G+   E ++++DF+  ++N
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  131   EYLVVNQLTVIEGPHRHRRPDIVVFVNGVPLAVVELKSPADENATVQGAFNQLQTYKAEI  190
             ++L VNQLT+++G  + +RPDIV+F+NG+P+ V+ELK++++E   V+++++QL+TYK  I
Sbjct  126   DFLAVNQLTIVNGDYK-KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  191   PSLFVYNELLVVSDGTTARLGTLTSSWERFGPWRTVDGSAVAARGTLEMITLLEGVFDRA  250
             P LF +NE+LV SDG  ++ G+LT++ +RF  WR+ DG + ++ G   +  L++G+++  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  251   RLLDLVRHfvvfeedrdevvKKI-AGYHQFHAVRTAVEETVRATRPGGDRKVGVVWHTQG  309
              LLDL+R FV+F++D    + KI A+YHQ+ AV  AV+ ++ A+   GD K GV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQG  304

Query  310   SGKSLTMTFYAGKVVLDPAMENPTIVVITDRNDLDDQLFGTFGRCHE-----LLRQKPVQ  364
             SGKSLTM F++GK++    ++NPT+VV+TDRNDLD+QL++TF +        LLRQ P Q
Sbjct  305   SGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  365   ARDRSHLRELLQVAAGGVVFTTVQKFLPEEKGDRFPRLSERRNVVVIADEAHRSQYGFKS  424
             A  R +L+ LL V +GG+VFTT+QKF PE++    + L+ER+NV+V+ADEAHR+QYGF++
Sbjct  363   AETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNA  422

Query  425   KLVKTKDG-GYLVPGFAQHMRDALPSASFIGFTGTPIEAVDKDTRAVFGDYISVYDIQRA  483
             K     +G  Y   G+A+ +RDALP+A+F+GFTGTP+ + DK+T+ VFG+YI VYD+ +A
Sbjct  423   KYDDKGEGIKY---GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  484   VEDGATVPIYYESRVAKLDLNDDLKKVIDDefeevteqeeesrkeKLKSKWAALEAVVGA  543
             V DG+TV IYYESRV  L+L + L   +D+ ++++TE++EE  K++LKSKW+ +EA+ GA
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  544   EKRVNMIAEDLIRHFEARVEAMEGKAMVVCMSRRICVDMYAALVALRPAWHSPDDDKGAI  603
               RV+ +A D+I+HFE+R +AM GK+M+V MSRRI VD+Y  ++ L+P WHS DDDKG I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  604   KVVMTGSASDPQPWQQHIRNKARLRDLADRLKDPADPLKVVIVRDMWLTGFDAPCLHTLY  663
             KVVMTGS+SDP + Q+HI  K R   L  R+KD  D L++VIVRDMWLTGFD P +HT+Y
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  664   VDKPMQGHGLMQAIARVNRVFRDKPGGLVVDYLGLAENLRKALATYTESGGKGDPARDHA  723
             +DKPM+GH LMQAIARVNRVF+DKPGGL+VDY+G+AE+L+ AL  YTES ++++ A D  
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTD  716

Query  724   RAVPRMMEMIEVCRGLFHGFDVMAFVNGSPIERLMLLPAAQEHIFGL-EDGRDRLVQAVT  782
             +AV  M+   +V ++++  +D   F ++   ER   ++ + + ++GL ED R+R++++VT
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVT  776

Query  783   ELSRSFALAVPHDDALAVRDEVAFYQAVKAAVVK----TSLSASGKSEAEVELAIRQIVS  838
             EL+++FAL   +  A  + DE+AF++AVKA++VK       + + K+ AEVE  I Q+VS
Sbjct  777   ELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVS  836

Query  839   KAISTDGVMDVFAAAGLKRPDLSILSEEFLADVKAMQHKNVAVELLRKLLHDELKVRRRT  898
             +++ T++V+DV+ + GL +PDLSILS++FL DV ++++KNVAVELL +LL +++K   +T
Sbjct  837   QSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKT  896

Query  899   NLVQSEAFSDKLEKTIARYRNRGVETAQVIEELIRMARDVKVAQKRGEDLKLNDAELAFY  958
             N   S  FS+ L ++I +Y +R++ET++VIEELI++A+D+K  Q+RG++L LN  E+AFY
Sbjct  897   NATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFY  956

Query  959   DALGANDSAVQVLGDAVLAQIARELTETIRNSVTIDWAVKEtvraklrtlvrrrlkkHGY  1018
             DAL+++++A + +GD  L  IA+ELT T+++++ +DW+ +++ +AK+R  VRR LKK GY
Sbjct  957   DALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGY  1016

Query  1019  PPD  1021
             PPD
Sbjct  1017  PPD  1019

89) STH1908 in NC_006177


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  811 bits (3072),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 491/1075 (46%), Positives = 756/1075 (71%), Gaps = 60/1075 (5%)

Query  4     LSEETLEQAALEWLRELGWAVAHGPDISPVDANTPGTERESYRQVVLTGRLREAIRGLNP  63
             ++E+ LEQ ALEWL+ LG     G +IS     +   ER S ++VVL  RL  A+R +N+
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEIS---MTSLTPERKSDKDVVLHERLEKALRKINS  61

Query  64    HIPASAQEDALRQVVSPNIPGLVQANRQFHRWLVEGVPVE-FQKDGETRGDRVRLVDFTD  122
             +I +   E AL+++   + P L++ N  FH  L++G+ +E ++ +G++  + V+++DF  
Sbjct  62    DIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEY  121

Query  123   PSRNDWLAVNQLSIQGPKKVRRPDIILYLNGLPIVVIELKNPADESADIWAAFNQLQAYK  182
             P  ND LAVNQL+I      +RPDI+L++NGLPIVVIELKN+++E+ ++  +++QL++YK
Sbjct  122   PQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  183   EDIPDLFVYNELLVISDGLSARMGSLTANRERFMAWRTIDGHEIDPLGEMRELETLIRGA  242
               IP+LF +NE+LV SDG++++ GSLTAN +RFM+WR+ DG+  ++   +  L+ LI+G 
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQ-TESSPGLASLDVLIHGM  240

Query  243   FRHDLLLEYLRYFILFEEDG--HLVKKVAGYHQFHAVRAVVESVLKASAPGGSRKGGVVW  300
             +  + LL+ +RYF+LF++DG  H+ K +A+YHQ+ AV   V+  L AS+  G  KGGV+W
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  301   HTQGAGKSLEMTCLAGRLMSHPDLKNPTIVVVTDRNDLDNQLFGVFA-----GATELLRE  355
             HTQG+GKSL M  ++G+L+    L+NPT+VVVTDRNDLDNQL++ F      ++  LLR+
Sbjct  301   HTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  356   TPVQAETRPRLRELLANRPSGGIIFTTIQKFMPGEDEDTFPVLSERTNIIVICDEAHRSQ  415
             TP QAETR  L+ LL+   SGGI+FTT+QKF P ++E T + L+ER N+IV+ DEAHR+Q
Sbjct  359   TPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQ  417

Query  416   YGFAARLSLPERRRRPATAPMGSGGDLSDQIAAETPGGNYAVRYGYAQHMRDALPGATFV  475
             YGF A+               G G                 ++YGYA+ +RDALP ATFV
Sbjct  418   YGFNAKYD-----------DKGEG-----------------IKYGYAKYLRDALPNATFV  449

Query  476   AFTGTPVALEDRNTRAVFGDYVHIYDVLQAVKDGATVPIYYESRLAKLDLKEEEIPRIde  535
             +FTGTPVA  D+NT+ VFG+Y+++YD+ QAV DG+TV IYYESR+  L+L +     +D 
Sbjct  450   GFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS----LDL  505

Query  536   aveeltedeeddaaraaQYR-RWTALEKLVGAPPRIQKVAADLVAHFERRLAAMDGKAMV  594
                     E+++     + + +W+ +E L GA PR++ +A D++ HFE R  AM GK+M+
Sbjct  506   DEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMI  565

Query  595   VCMSREICVHMYNAIVALRPEWHDPDPEKGVIKIVMTGSAADKPLLRPHIYSKEVRKRLE  654
             V MSR I V++Y+ I+ L+PEWH  D +KGVIK+VMTGS++D   ++ HI +K  R+ LE
Sbjct  566   VTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLE  625

Query  655   RRFKDPNDPFKIVIVRDMWLTGFDAPCLHTMYIDKPMRGHNLMQAIARVNRVFRDKPGGL  714
             +R KD +D +++VIVRDMWLTGFD P +HTMYIDKPM+GHNLMQAIARVNRVF+DKPGGL
Sbjct  626   KRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGL  685

Query  715   VVDYIGISHELKQALREYTAARGRGEPAIDAERALDILREKMDVLRAMLHGCDYSAFRTE  774
             +VDY+GI++ LK+AL+EYT + ++++ AID+++A++++  K DV++ ML   DYS F ++
Sbjct  686   IVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSD  744

Query  775   AMA----LLPKVANHILGLEDGQK-RFADHVVAASRAFALCCTLEGALAYRDELAFFQAV  829
               +     +++  + ++GL ++++ RF   V   ++AFALC T   A    DE+AFF+AV
Sbjct  745   KKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAV  804

Query  830   KAALSK-----RAETDRKVADERKEAALRQIIAQAVVSDEVVDIFAAAGLSKPDISILSE  884
             KA+L K     +    RK + E  EA + Q+++Q+VV+++V+D++ + GL +PD+SILS+
Sbjct  805   KAGLVKLLQPPKEGKTRKTPAEV-EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSD  863

Query  885   EFLDEVRRMKERNLAVELLQRLIKNEIKARFETNVVQSARFSDLLQQALTRYRNRTIETA  944
             +FL +V  +K++N+AVELL+RL+K ++K+   TN   S RFS++L +++ +Y +R+IET+
Sbjct  864   DFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETS  923

Query  945   QVIEELIAMARRFQEEARRGEQLGLNEDELAFYDALASNESAVRELGDEVLKKMAVELTE  1004
             +VIEELI +A+ +++E +RG++LGLN DE+AFYDALAS+E+A   +GD  L+ +A ELT 
Sbjct  924   KVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTK  983

Query  1005  RLRKSVTVDWARRETvrarlrvmvrtllrrYKYPPDRQEAATNLVLKQAEVLSQE  1059
              ++ ++ VDW++R++ +A++RV VR LL++Y YPPD Q  A + V+ QAE+++++
Sbjct  984   TVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

90) hsdR1 in NC_014145


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  810 bits (3065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/1077 (46%), Positives = 755/1077 (71%), Gaps = 62/1077 (5%)

Query  7     EDHLEQATLQWLSALGWQTAHGPDISPPDARTAGTERDTYRQVCLPHRLAATIQRLNPNI  66
             ED+LEQ +L+WL +LG +   G +IS     +   ER + ++V L +RL  +++++N++I
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMT---SLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  67    PTSARDAALRLVLNPNTPGLVAANRQFHRWLVEGVPVE-YQRDGETRGDRVRLIDFSDVG  125
                  + AL+ +   ++P L+  N  FH  L++G+ +E Y+ +G++  + V++IDF    
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  126   RNDWLAVNQFTVQGPKHTRRPDLVLFLNGLPLVVLELKNPGDENADIWGAFNQLQAYKDD  185
              ND LAVNQ+T+      +RPD+VLF+NGLP+VV+ELKN+ +E  ++ ++++QL++YK  
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  186   IPDLFIDNELLVITDGISARMGSLTADRERFMAWRTIDGHTTDPLGSMRELETLVQGAFD  245
             IP+LF  NE+LV +DGI+++ GSLTA+ +RFM+WR+ DG+T  + G +  L+ L++G ++
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPG-LASLDVLIHGMLN  242

Query  246   RQTLLDYLQHFILFEDDG-GLVKKV-AGYHQFHAVRAVVDSVLKASAPGGSRKGGVVWHT  303
              +TLLD ++ F+LF+DDG G + K+ A+YHQ+ AV   VD  L AS+  G  KGGV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  304   QGAGKSIEMTCLAGMLIGHPELQNPTVLMVTDRNDLDNQLFGVFA-----GATELLHETP  358
             QG+GKS+ M  ++G LI    L+NPT+++VTDRNDLDNQL++ F      ++  LL++TP
Sbjct  303   QGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  359   VQAATRPKLRELLGNRPSGGIVFTTIQKFAPGEDEDSFPVLSERSNIIVICDEAHRSQYG  418
              QA TR  L+ LL+   SGGIVFTT+QKF P ++E + + L+ER N+IV+ DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  419   FAAKLPGQDDATRRYRQTAAAPLSAQDAGAIGATTALVTAAPASSVRYGYAQYLRDALPN  478
             F AK  +++++                                  ++YGYA+YLRDALPN
Sbjct  420   FNAKYDDKGEG----------------------------------IKYGYAKYLRDALPN  445

Query  479   ATFVAFTGTPVSLEDRDTRAVFGDYVHIYDVEQAVKDGATVPIYYESRLAKLELAEEDTT  538
             ATFV+FTGTPV+  D++T+ VFG+Y+++YD+ QAV DG+TV IYYESR+  L+L++   +
Sbjct  446   ATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ---S  502

Query  539   WldddvdqlteddeddASKTSKLRRWAALEKLVGAPPRIQKVAADIVEHFENRLAALDGK  598
                D+  +   +D+++  K     +W+ +E L GA PR++ +A DI++HFE R  A+ GK
Sbjct  503   LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGK  562

Query  599   AMVVGMSREICVHLYDALVALRPEWHDPDPDKGAIKIIMTGSASDKPMLKPHIYTKEVKK  658
             +M+V MSR I V+LYD ++ L+PEWH  D DKG IK++MTGS+SD   ++ HI  K  ++
Sbjct  563   GMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRN  622

Query  659   RLERRYKDPADPFKLVIVRDMWLTGFDAPCLHTMYIDKPMRGHNLMQAIARVNRVFKDKP  718
              LE+R KD  D ++LVIVRDMWLTGFD P +HTMYIDKPM+GHNLMQAIARVNRVFKDKP
Sbjct  623   LLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKP  682

Query  719   GGLVVDYIGIANELKAALKDYTLAHGKGRPTIDTHEALRLLLEKMEVLHGILHGCDYADF  778
             GGL+VDY+GIA+ LK ALK+YT   ++++ +IDT+ A+ L+L K +V++++L   DY+ F
Sbjct  683   GGLIVDYVGIAESLKEALKEYT-ESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKF  741

Query  779   ----RTQAWQLLPKVANHILG-QDDGKKRFADAVLSATKAFALCCTLDEALEHRDELAFL  833
                 +++    +++  + ++G  +D ++RF  +V    KAFALC T   A E  DE+AF+
Sbjct  742   NSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF  801

Query  834   QATKAALTK--HTTQDKKL--SDEQKEHALRQILSKAVVSAEVVDIFQAAGLNKPDIGIL  889
             +A KA+L K  +  ++ K   +  + E  + Q++S++VV+ +V+D++Q+ GL++PD++IL
Sbjct  802   KAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSIL  861

Query  890   SEEFLDDVRHMKERNLAVELLERLLKDDIKTRFKTNVVKAAKYSELLQESLKRYRNRAIE  949
             S++FL DV  +K++N+AVELL+RLLK+++K+  KTN   + ++SE+L +S+++Y +R+IE
Sbjct  862   SDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIE  921

Query  950   TAQVIEELIAMAKQFQQEAIRGAALGLSPEERAFYDALAANESAVRELGDETLKKIAVEL  1009
             T++VIEELI +AK+++QE  RG  LGL+++E AFYDALA++E+A   +GD  L+ IA EL
Sbjct  922   TSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHEL  981

Query  1010  TLKLRNSVTVDWSVRDAVRASIRVMVKTLLRRYKYPPDKQEEATETVLKQAEMLSAE  1066
             T  +++++ VDWS RD+ +A +RV V+ LL++Y YPPD Q  A E V+ QAE+++ +
Sbjct  982   TKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

91) hsdR3 in NC_014145


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  810 bits (3065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/1077 (46%), Positives = 755/1077 (71%), Gaps = 62/1077 (5%)

Query  7     EDHLEQATLQWLSALGWQTAHGPDISPPDARTAGTERDTYRQVCLPHRLAATIQRLNPNI  66
             ED+LEQ +L+WL +LG +   G +IS     +   ER + ++V L +RL  +++++N++I
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMT---SLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  67    PTSARDAALRLVLNPNTPGLVAANRQFHRWLVEGVPVE-YQRDGETRGDRVRLIDFSDVG  125
                  + AL+ +   ++P L+  N  FH  L++G+ +E Y+ +G++  + V++IDF    
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  126   RNDWLAVNQFTVQGPKHTRRPDLVLFLNGLPLVVLELKNPGDENADIWGAFNQLQAYKDD  185
              ND LAVNQ+T+      +RPD+VLF+NGLP+VV+ELKN+ +E  ++ ++++QL++YK  
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  186   IPDLFIDNELLVITDGISARMGSLTADRERFMAWRTIDGHTTDPLGSMRELETLVQGAFD  245
             IP+LF  NE+LV +DGI+++ GSLTA+ +RFM+WR+ DG+T  + G +  L+ L++G ++
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPG-LASLDVLIHGMLN  242

Query  246   RQTLLDYLQHFILFEDDG-GLVKKV-AGYHQFHAVRAVVDSVLKASAPGGSRKGGVVWHT  303
              +TLLD ++ F+LF+DDG G + K+ A+YHQ+ AV   VD  L AS+  G  KGGV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  304   QGAGKSIEMTCLAGMLIGHPELQNPTVLMVTDRNDLDNQLFGVFA-----GATELLHETP  358
             QG+GKS+ M  ++G LI    L+NPT+++VTDRNDLDNQL++ F      ++  LL++TP
Sbjct  303   QGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  359   VQAATRPKLRELLGNRPSGGIVFTTIQKFAPGEDEDSFPVLSERSNIIVICDEAHRSQYG  418
              QA TR  L+ LL+   SGGIVFTT+QKF P ++E + + L+ER N+IV+ DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  419   FAAKLPGQDDATRRYRQTAAAPLSAQDAGAIGATTALVTAAPASSVRYGYAQYLRDALPN  478
             F AK  +++++                                  ++YGYA+YLRDALPN
Sbjct  420   FNAKYDDKGEG----------------------------------IKYGYAKYLRDALPN  445

Query  479   ATFVAFTGTPVSLEDRDTRAVFGDYVHIYDVEQAVKDGATVPIYYESRLAKLELAEEDTT  538
             ATFV+FTGTPV+  D++T+ VFG+Y+++YD+ QAV DG+TV IYYESR+  L+L++   +
Sbjct  446   ATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ---S  502

Query  539   WldddvdqlteddeddASKTSKLRRWAALEKLVGAPPRIQKVAADIVEHFENRLAALDGK  598
                D+  +   +D+++  K     +W+ +E L GA PR++ +A DI++HFE R  A+ GK
Sbjct  503   LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGK  562

Query  599   AMVVGMSREICVHLYDALVALRPEWHDPDPDKGAIKIIMTGSASDKPMLKPHIYTKEVKK  658
             +M+V MSR I V+LYD ++ L+PEWH  D DKG IK++MTGS+SD   ++ HI  K  ++
Sbjct  563   GMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRN  622

Query  659   RLERRYKDPADPFKLVIVRDMWLTGFDAPCLHTMYIDKPMRGHNLMQAIARVNRVFKDKP  718
              LE+R KD  D ++LVIVRDMWLTGFD P +HTMYIDKPM+GHNLMQAIARVNRVFKDKP
Sbjct  623   LLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKP  682

Query  719   GGLVVDYIGIANELKAALKDYTLAHGKGRPTIDTHEALRLLLEKMEVLHGILHGCDYADF  778
             GGL+VDY+GIA+ LK ALK+YT   ++++ +IDT+ A+ L+L K +V++++L   DY+ F
Sbjct  683   GGLIVDYVGIAESLKEALKEYT-ESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKF  741

Query  779   ----RTQAWQLLPKVANHILG-QDDGKKRFADAVLSATKAFALCCTLDEALEHRDELAFL  833
                 +++    +++  + ++G  +D ++RF  +V    KAFALC T   A E  DE+AF+
Sbjct  742   NSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF  801

Query  834   QATKAALTK--HTTQDKKL--SDEQKEHALRQILSKAVVSAEVVDIFQAAGLNKPDIGIL  889
             +A KA+L K  +  ++ K   +  + E  + Q++S++VV+ +V+D++Q+ GL++PD++IL
Sbjct  802   KAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSIL  861

Query  890   SEEFLDDVRHMKERNLAVELLERLLKDDIKTRFKTNVVKAAKYSELLQESLKRYRNRAIE  949
             S++FL DV  +K++N+AVELL+RLLK+++K+  KTN   + ++SE+L +S+++Y +R+IE
Sbjct  862   SDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIE  921

Query  950   TAQVIEELIAMAKQFQQEAIRGAALGLSPEERAFYDALAANESAVRELGDETLKKIAVEL  1009
             T++VIEELI +AK+++QE  RG  LGL+++E AFYDALA++E+A   +GD  L+ IA EL
Sbjct  922   TSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHEL  981

Query  1010  TLKLRNSVTVDWSVRDAVRASIRVMVKTLLRRYKYPPDKQEEATETVLKQAEMLSAE  1066
             T  +++++ VDWS RD+ +A +RV V+ LL++Y YPPD Q  A E V+ QAE+++ +
Sbjct  982   TKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

92) K649_10280 in NC_021081


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  808 bits (3057),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 484/1041 (47%), Positives = 758/1041 (73%), Gaps = 46/1041 (4%)

Query  21    GWQVVHGPEIAPDQPQAERADYGQVVLEQRLRDALVRLNPGLPAETLEDASRKLTQPEGS  80
             G +   G EI+     +ER    +VVL++RL  AL ++N+++ +  +E A + LT   ++
Sbjct  22    GYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSP  81

Query  81    DLIQRNRALHRLLVNGVNVEYRDKDGEIRGAQARVIDFDNPANNDWLAVNQFSVVERGTL  140
             +L++ N ++H  L+NG+++E  D +G+      ++IDF+ P NND LAVNQ+++V+ +  
Sbjct  82    NLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGD--  139

Query  141   QRAPSMQRASTRRPDVVLFVNGLPLAVVELKNAADEDATIWTAWQQLQTYQAEIPSLFVP  200
                        +RPD+VLF+NGLP+ V+ELKN+++E   +  + +QL+TY+  IP LF  
Sbjct  140   ---------YKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTF  190

Query  201   NAVLVISDgvearvgvvgagreWFKPWRTVAGDRLADSHVPELQVVLEGVFAPRRFLDLV  260
             N VLV SDG++++ G + A  ++F  WR+  G+  + + ++ L+V+++G++ P  +LDL+
Sbjct  191   NEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLI  250

Query  261   RDFIVFEDDGSGRLIKKMAGYHQFHAVQVAVQETLRAALALREGRGGQSGDRRIGVVWHT  320
             R F++F+DDG G++ K +A+YHQ+ AV+ AV+   RA LA     +++ GD + GV+WHT
Sbjct  251   RYFVLFQDDGKGHISKILAAYHQYYAVNKAVD---RALLA-----SSEQGDGKGGVIWHT  302

Query  321   QGSGKSLTMAFYAGRIIREPAMENPTLVVLTDRNDLDDQLYSTFARCHE-----LLRQPP  375
             QGSGKSLTM F++G++I+   ++NPTLVV+TDRNDLD+QLYSTF +        LLRQ P
Sbjct  303   QGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  376   VQAESRAHLRELLSVQSGGVVFTTIQKFMPEEKGDRHPRLSERRNIVVIADEAHRSQYDF  435
              QAE+R +L+ LLSV+SGG+VFTT+QKF PE++    + L+ER+N++V+ADEAHR+QY+F
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  436   ID-----------GFARHMRDALPNASFIGFTGTPIELQDANTRAVFGDYISIYDIQRAV  484
                          G+A+ +RDALPNA+F+GFTGTP+   D NT+ VFG+YI +YD+ +AV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  485   EDGATVPIYYESRQAKLDLPEELKPKIDeefeevtegeelerkeKLKSKWAQLEAIVGAE  544
              DG+TV IYYESR   L+LP+ L   +DE ++++TE++E + K++LKSKW+++EA+ GA 
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  545   RRLRLVAKDIVQHFEQRLEALDGKAMIVCMSRRICVELYREIVRLRPQWHHDDDDKGAIK  604
              R+  +AKDI+QHFE R +A+ GK+MIV MSRRI V+LY EI+RL+P+WH DDDDKG IK
Sbjct  539   PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  605   IVMTGSASDPPDWQPHIRNKPRREALAKRFRDPEDAFKLVIVRDMWLTGFDAPSLHTMYL  664
             +VMTGS+SDP   Q HI  K RR+ L KR +D +D ++LVIVRDMWLTGFD PS+HTMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  665   DKPMRGHGLMQAIARVNRVFRDKPGGLVVDYLGLATELKAALATYTESGGTGRTALNQEE  724
             DKPM+GH LMQAIARVNRVF+DKPGGL+VDY+G+A  LK AL  YTES + ++TA++ + 
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDK  717

Query  725   AVALMREKYEICRGLFYGFDWSRWVTGTPAERLSLLPAAQEHILA-QENGKDRLLRAARE  783
             AV LM  KY++ ++++Y +D S+  ++  +ER   ++ + + +++  E+ ++R++++  E
Sbjct  718   AVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTE  777

Query  784   LSQAFALAVPHEEALRIRddvaffqavqavLAK--RAPGQA---RPEEELEQAVRQIIAR  838
             L++AFAL   +  A  + D++AFF+AV+A L K  ++P ++   +   E+E  + Q++++
Sbjct  778   LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  839   AVAPEGVVDIFAAAGLKRPDISILSDEFLSEVRGMPQKNLAVELLQKLLKGEIRARGQKN  898
             +V  E+V+D++ + GL +PD+SILSD+FL +V G+ QKN+AVELL++LLKG++++  + N
Sbjct  838   SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  899   LVQARSFAEMLERTIRRYQNRAIEAAQVIEELIALARDMREANARGEKLGLSEDELAFYD  958
                ++ F+EML  +I +Y++R+IE+++VIEELI LA+D+++ + RG+ LGL+ DE+AFYD
Sbjct  898   ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYD  957

Query  959   ALEANDSAVKVLGDATLREIARELVQTVRNNVTLDWTLRENVRAQLRVLVKRTLRKYGYP  1018
             AL ++++A   +GD  LR IA+EL +TV++N+ +DW+ R++ +A++RV V+R L+KYGYP
Sbjct  958   ALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYP  1017

Query  1019  PDKQEKATQTVLEQAALLSAQ  1039
             PD Q  A + V+EQA L++ +
Sbjct  1018  PDLQKMAVEQVVEQAELMANN  1038

93) Mrub_2450 in NC_013946


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  808 bits (3057),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 484/1041 (47%), Positives = 758/1041 (73%), Gaps = 46/1041 (4%)

Query  21    GWQVVHGPEIAPDQPQAERADYGQVVLEQRLRDALVRLNPGLPAETLEDASRKLTQPEGS  80
             G +   G EI+     +ER    +VVL++RL  AL ++N+++ +  +E A + LT   ++
Sbjct  22    GYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSP  81

Query  81    DLIQRNRALHRLLVNGVNVEYRDKDGEIRGAQARVIDFDNPANNDWLAVNQFSVVERGTL  140
             +L++ N ++H  L+NG+++E  D +G+      ++IDF+ P NND LAVNQ+++V+ +  
Sbjct  82    NLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGD--  139

Query  141   QRAPSMQRASTRRPDVVLFVNGLPLAVVELKNAADEDATIWTAWQQLQTYQAEIPSLFVP  200
                        +RPD+VLF+NGLP+ V+ELKN+++E   +  + +QL+TY+  IP LF  
Sbjct  140   ---------YKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTF  190

Query  201   NAVLVISDgvearvgvvgagreWFKPWRTVAGDRLADSHVPELQVVLEGVFAPRRFLDLV  260
             N VLV SDG++++ G + A  ++F  WR+  G+  + + ++ L+V+++G++ P  +LDL+
Sbjct  191   NEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLI  250

Query  261   RDFIVFEDDGSGRLIKKMAGYHQFHAVQVAVQETLRAALALREGRGGQSGDRRIGVVWHT  320
             R F++F+DDG G++ K +A+YHQ+ AV+ AV+   RA LA     +++ GD + GV+WHT
Sbjct  251   RYFVLFQDDGKGHISKILAAYHQYYAVNKAVD---RALLA-----SSEQGDGKGGVIWHT  302

Query  321   QGSGKSLTMAFYAGRIIREPAMENPTLVVLTDRNDLDDQLYSTFARCHE-----LLRQPP  375
             QGSGKSLTM F++G++I+   ++NPTLVV+TDRNDLD+QLYSTF +        LLRQ P
Sbjct  303   QGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  376   VQAESRAHLRELLSVQSGGVVFTTIQKFMPEEKGDRHPRLSERRNIVVIADEAHRSQYDF  435
              QAE+R +L+ LLSV+SGG+VFTT+QKF PE++    + L+ER+N++V+ADEAHR+QY+F
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  436   ID-----------GFARHMRDALPNASFIGFTGTPIELQDANTRAVFGDYISIYDIQRAV  484
                          G+A+ +RDALPNA+F+GFTGTP+   D NT+ VFG+YI +YD+ +AV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  485   EDGATVPIYYESRQAKLDLPEELKPKIDeefeevtegeelerkeKLKSKWAQLEAIVGAE  544
              DG+TV IYYESR   L+LP+ L   +DE ++++TE++E + K++LKSKW+++EA+ GA 
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  545   RRLRLVAKDIVQHFEQRLEALDGKAMIVCMSRRICVELYREIVRLRPQWHHDDDDKGAIK  604
              R+  +AKDI+QHFE R +A+ GK+MIV MSRRI V+LY EI+RL+P+WH DDDDKG IK
Sbjct  539   PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  605   IVMTGSASDPPDWQPHIRNKPRREALAKRFRDPEDAFKLVIVRDMWLTGFDAPSLHTMYL  664
             +VMTGS+SDP   Q HI  K RR+ L KR +D +D ++LVIVRDMWLTGFD PS+HTMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  665   DKPMRGHGLMQAIARVNRVFRDKPGGLVVDYLGLATELKAALATYTESGGTGRTALNQEE  724
             DKPM+GH LMQAIARVNRVF+DKPGGL+VDY+G+A  LK AL  YTES + ++TA++ + 
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDK  717

Query  725   AVALMREKYEICRGLFYGFDWSRWVTGTPAERLSLLPAAQEHILA-QENGKDRLLRAARE  783
             AV LM  KY++ ++++Y +D S+  ++  +ER   ++ + + +++  E+ ++R++++  E
Sbjct  718   AVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTE  777

Query  784   LSQAFALAVPHEEALRIRddvaffqavqavLAK--RAPGQA---RPEEELEQAVRQIIAR  838
             L++AFAL   +  A  + D++AFF+AV+A L K  ++P ++   +   E+E  + Q++++
Sbjct  778   LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  839   AVAPEGVVDIFAAAGLKRPDISILSDEFLSEVRGMPQKNLAVELLQKLLKGEIRARGQKN  898
             +V  E+V+D++ + GL +PD+SILSD+FL +V G+ QKN+AVELL++LLKG++++  + N
Sbjct  838   SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  899   LVQARSFAEMLERTIRRYQNRAIEAAQVIEELIALARDMREANARGEKLGLSEDELAFYD  958
                ++ F+EML  +I +Y++R+IE+++VIEELI LA+D+++ + RG+ LGL+ DE+AFYD
Sbjct  898   ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYD  957

Query  959   ALEANDSAVKVLGDATLREIARELVQTVRNNVTLDWTLRENVRAQLRVLVKRTLRKYGYP  1018
             AL ++++A   +GD  LR IA+EL +TV++N+ +DW+ R++ +A++RV V+R L+KYGYP
Sbjct  958   ALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYP  1017

Query  1019  PDKQEKATQTVLEQAALLSAQ  1039
             PD Q  A + V+EQA L++ +
Sbjct  1018  PDLQKMAVEQVVEQAELMANN  1038

94) hsdR in NC_017390


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  807 bits (3055),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/1056 (45%), Positives = 764/1056 (73%), Gaps = 38/1056 (3%)

Query  2     LSEDDLEQLSLGWFAGQGWEVLYGPDIAPDGANPLRTSFQDVFLRPVLRQQLAQINPHLP  61
             ++EDDLEQ++L W+ + G +   G +I+  +  P R S +DV L+  L + L +IN+++ 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    DSVLDEVVSRVTRPESPDIVASNKAFHHLLLTGVPVA-YKRDDQIIHDTALLMDFNRPDH  120
                ++  +  +T   SP+++ +N +FH+ L+ G+ +  Y  ++Q I +   ++DF+ P++
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  121   NRFSVVNQVAIKGTKQVRRPDVIGYINGLPVAVIELKSPVDANADIWAAFNQLQTYKNEV  180
             N F  VNQ++I      +RPD++ +INGLP+ VIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEVLVISDGYNARIGSLTADEERYLPWKTLSNEDDKPVRECQLETVINGFFNRE  240
             ++LF  NEVLV SDG N++ GSLTA+ +R++ W++   + + +     L+ +I+G +N E
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  241   LLLDYLRYFILFEHDGQRTMKKI-AACHQFHAVREAVSATIVAATGQYLLLRSDIKPGSK  299
              LLD +RYF+LF++DG+  + KI AA HQ+ AV  AV  +++A++ Q          G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQ----------GDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAAMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+VVVTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   KDLLKQEPQQASDREQLRAMLAARGSGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISD  414
             K+LL+Q P+QA  R +L+++L+   SGGI+FTT+QKF P + E + +AL  R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLNATLDRQSGAYKYGYAKHMRDALPNAAFMGFTGTPVSAEDKDTRAVFGDYV  474
             EAHR+QYG+NA  D ++ + KYGYAK +RDALPNA+F+GFTGTPV++ DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNHDELEALSSQVEELVEDEESGQKEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L    +++ ED+E + K++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSRPRIEQVAADLVKHFDARNATMNGKAMIVAMSRDICVRLYDALVDLRPQWHS  594
             R+E L G++PR+E +A D+++HF++R+ +M+GK+MIV+MSR I V LYD ++ L+P+WHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EEVDKGAIKIIMTGSASDKAPLQPHIYNKPTKKRLEARFKDLNDPLKIVIVRDMWLTGFD  654
             ++ DKG IK++MTGS+SD +++Q HI  K  ++ LE R KD++D L++VIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDAKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YT++ ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTIDAREAFAILLEKLDIIHGMFAKTPTDAGFDYSAFADN--PQR--VLLDAANYILG  770
             +QT+ID+  A  ++L K D+I++M+ +      +DYS F  +  ++R   + ++ +Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYYTISNTMDYVIG  762

Query  771   L-DEGKKRYFDVVLALNKALSLCSTLDEVKPLQKELAFLSAVKVAMIKL----TTTDQKF  825
             L ++ ++R++  V  L KA++LC+T    + L+ E+AF+ AVK +++KL         + 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  826   SQSEKHSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLQEVQDMPQRNLAVELL  885
             + +E ++ +++++ +++V+ +V DV+   GL++P++++LSD+FL++V+++ Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  886   QKLLNDGIHARTNNNVVQEKKYSERLKAVLLRYHNRAIETAQVIEELIQMAKDFQAAMAR  945
             ++LL++ + +  + N    K++SE L   + +Y++R+IET++VIEELIQ+AKD++    R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  946   DDALGLNPDEIAFYDALAENESAVRELGDEILKKLAVEVTQKLRQSTTVDWQKRESVRAR  1005
             ++ LGLN+DEIAFYDALA +E+A   +GD  L+ +A E+T+ ++++  VDW KR+S +A+
Sbjct  943   GNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAK  1002

Query  1006  LRILVRQTLRKYKYPPDKTPYAVELILKQAEVMSNS  1041
             +R+ VR+ L+KY YPPD    AVE ++ QAE+M+N+
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

95) EpC_05850 in NC_012214


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  807 bits (3055),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/1056 (45%), Positives = 764/1056 (73%), Gaps = 38/1056 (3%)

Query  2     LSEDDLEQLSLGWFAGQGWEVLYGPDIAPDGANPLRTSFQDVFLRPVLRQQLAQINPHLP  61
             ++EDDLEQ++L W+ + G +   G +I+  +  P R S +DV L+  L + L +IN+++ 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    DSVLDEVVSRVTRPESPDIVASNKAFHHLLLTGVPVA-YKRDDQIIHDTALLMDFNRPDH  120
                ++  +  +T   SP+++ +N +FH+ L+ G+ +  Y  ++Q I +   ++DF+ P++
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  121   NRFSVVNQVAIKGTKQVRRPDVIGYINGLPVAVIELKSPVDANADIWAAFNQLQTYKNEV  180
             N F  VNQ++I      +RPD++ +INGLP+ VIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEVLVISDGYNARIGSLTADEERYLPWKTLSNEDDKPVRECQLETVINGFFNRE  240
             ++LF  NEVLV SDG N++ GSLTA+ +R++ W++   + + +     L+ +I+G +N E
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  241   LLLDYLRYFILFEHDGQRTMKKI-AACHQFHAVREAVSATIVAATGQYLLLRSDIKPGSK  299
              LLD +RYF+LF++DG+  + KI AA HQ+ AV  AV  +++A++ Q          G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQ----------GDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAAMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+VVVTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   KDLLKQEPQQASDREQLRAMLAARGSGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISD  414
             K+LL+Q P+QA  R +L+++L+   SGGI+FTT+QKF P + E + +AL  R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLNATLDRQSGAYKYGYAKHMRDALPNAAFMGFTGTPVSAEDKDTRAVFGDYV  474
             EAHR+QYG+NA  D ++ + KYGYAK +RDALPNA+F+GFTGTPV++ DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNHDELEALSSQVEELVEDEESGQKEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L    +++ ED+E + K++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSRPRIEQVAADLVKHFDARNATMNGKAMIVAMSRDICVRLYDALVDLRPQWHS  594
             R+E L G++PR+E +A D+++HF++R+ +M+GK+MIV+MSR I V LYD ++ L+P+WHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EEVDKGAIKIIMTGSASDKAPLQPHIYNKPTKKRLEARFKDLNDPLKIVIVRDMWLTGFD  654
             ++ DKG IK++MTGS+SD +++Q HI  K  ++ LE R KD++D L++VIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDAKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YT++ ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTIDAREAFAILLEKLDIIHGMFAKTPTDAGFDYSAFADN--PQR--VLLDAANYILG  770
             +QT+ID+  A  ++L K D+I++M+ +      +DYS F  +  ++R   + ++ +Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYYTISNTMDYVIG  762

Query  771   L-DEGKKRYFDVVLALNKALSLCSTLDEVKPLQKELAFLSAVKVAMIKL----TTTDQKF  825
             L ++ ++R++  V  L KA++LC+T    + L+ E+AF+ AVK +++KL         + 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  826   SQSEKHSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLQEVQDMPQRNLAVELL  885
             + +E ++ +++++ +++V+ +V DV+   GL++P++++LSD+FL++V+++ Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  886   QKLLNDGIHARTNNNVVQEKKYSERLKAVLLRYHNRAIETAQVIEELIQMAKDFQAAMAR  945
             ++LL++ + +  + N    K++SE L   + +Y++R+IET++VIEELIQ+AKD++    R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  946   DDALGLNPDEIAFYDALAENESAVRELGDEILKKLAVEVTQKLRQSTTVDWQKRESVRAR  1005
             ++ LGLN+DEIAFYDALA +E+A   +GD  L+ +A E+T+ ++++  VDW KR+S +A+
Sbjct  943   GNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAK  1002

Query  1006  LRILVRQTLRKYKYPPDKTPYAVELILKQAEVMSNS  1041
             +R+ VR+ L+KY YPPD    AVE ++ QAE+M+N+
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

96) PGA2_c07320 in NC_018286


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  806 bits (3050),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 488/1052 (47%), Positives = 744/1052 (71%), Gaps = 34/1052 (3%)

Query  3     INEDLVEQAVLALMQELGW--RLEDPMAIVPDGPQRRRGAYGEVVLPELLEDVARRLNPG  60
             +NED +EQ  L  +Q LG   +  + +++ +  P+R+ +   +VVL E LE   R++N++
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDK--DVVLHERLEKALRKINSD  62

Query  61    IPEEALRSALKQVQVSETPSLIEENRRIHRLLVDGIDVEYRRPDGSIKGDKVRLIDFANP  120
             I    +  AL ++ +  +P+L+E+N  +H  L++GI++E    +G    + V++IDF  P
Sbjct  63    IHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYP  122

Query  121   AKNDFMVTNQFTVVESGHNRRPDIVAFVNGLPLVVVELKNAASENATIEDAFNQLQTYKQ  180
              +NDF+  NQ+T+V+++ ++RPDIV F+NGLP+VV+ELKN+++E   +ED+++QL+TYK 
Sbjct  123   QNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  181   QIPSLFRTNAALITSDGLLARIGSLSAGEDRFMPWRTVTGAQDDFTPEGPKEMETLIRGV  240
             +IP LF  N  L+TSDG+ ++ GSL+A  DRFM WR+  G  +  ++ G   ++ LI+G+
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTE--SSPGLASLDVLIHGM  240

Query  241   LHPERLLQLVRDFTVFGDKGDG-VFKIIGGYHQFHGARKALASAIDAVSADGDRKVGVIW  299
             L+PE LL+L+R F +F D G G + KI+++YHQ+ +  KA+  A+ A S +GD K GVIW
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300

Query  300   HTQGSGKSFLMAFFAGLLVRAPKLQNPTILVVTDRNDLDDQLYGTFSLCRD-----LIRQ  354
             HTQGSGKS+ M FF+G L++   L+NPT++VVTDRNDLD+QLY+TF   ++     L+RQ
Sbjct  301   HTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  355   TPEQIEDREDLRQKLDRQSGGVIFSTLQKFSPMAGEEDFPMLSDRRNIIVLADEAHRSQY  414
             TP Q E R +L+  L  +SGG++F+T+QKF P   E   + L++R+N+IV+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQY  418

Query  415   GFDAKLDRTTGARRYGYAHYLRQALPNASFAGFTGTPIEAADVNTPAVFGEYVDVYDISR  474
             GF+AK D    + +YGYA YLR+ALPNA+F GFTGTP+ ++D NT  VFG+Y+DVYD+++
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  475   AVEDKATVPIYYESRLARVELEQDKLPEIDAAVEALFDDETLSEQEKAKSKWSSVERLVG  534
             AV D +TV IYYESR+  ++L Q    ++D A + + +D+    +++ KSKWS +E L G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  535   APPRLEKVAHDIVAHFEDRVEAMAGKGMIVCMSRAICVDLYNRITELRPEWHSEDDKEGV  594
             A PR+E +A DI+ HFE R +AM GKGMIV MSR I VDLY+ I  L+PEWHS+DD  GV
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  595   VKVVMTGSASDPLDWQKHIGSKMRRDLLAKRARDPEDQLKLVIVRDMWLTGFDAPSMHTM  654
             +KVVMTGS+SDP   Q+HIG+K RR+LL KR +D +D+L+LVIVRDMWLTGFD PSMHTM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTM  656

Query  655   YIDKPMRGHGLMQAIARVNRVFKDKPGGLVVDYIGIGQNLKKALQNYTATDRDQTGIDEE  714
             YIDKPM+GH LMQAIARVNRVFKDKPGGL+VDY+GI+++LK AL++YT +D+ QT+ID +
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  715   EAVATLQELVERCQDFFSGFDYQAGIVGAPQERLKALAGAIEWALEKQkaradkatdeka  774
              AV  +    +  QD +  +DY     +   ER  +++ +++  +       ++      
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQR------  770

Query  775   kkaeLNYYADLVANLSKAFALASASDYAQSVKEEVGFFQAVRAALSK--SSPKTGMSKR-  831
                    +   V++L+KAFAL ++   AQ +++E++FF+AV+A+L K   +PK G +++ 
Sbjct  771   -------FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKT  823

Query  832   --EKEFAMGQlisdaiadasiidvlaaaGMRTPEISVLSEEFLSEIQNMEHKNLALEALR  889
               E E  + QL+S+++    +IDV  + G+  P++S+LS++FL +++ + +KN+A+E L 
Sbjct  824   PAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLN  883

Query  890   KLLAGEIKARGQRNVVEAKAFSERLEAAVARYHANAITSLEMIQELIDMAKDMKASVQRg  949
             +LL G++K+  + N   +K FSE L  ++ +Y++ +I +  +I+ELI++AKD+K   QRG
Sbjct  884   RLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRG  943

Query  950   edlglgeeelAFYDALAQNQSAVEMLGNEELRKIAHVLVEQLQQNVTVDWHLKESARAKL  1009
             ++LGL  +E+AFYDALA +++A E +G+ ELR IAH L   +++N+ VDW  ++SA+AK+
Sbjct  944   NELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKM  1003

Query  1010  RVLVRRILKKFGYPPDLAPVAINTVLSQAETL  1041
             RV VRR+LKK+GYPPDL  +A++ V+ QAE +
Sbjct  1004  RVAVRRLLKKYGYPPDLQKMAVEQVVEQAELM  1035

97) Rhom172_1461 in NC_015966


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  805 bits (3049),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/1083 (47%), Positives = 776/1083 (72%), Gaps = 74/1083 (6%)

Query  8     EEDVEQMALDELQALGWQTAYGPDLAPESLRPERETYGDVVLKGRLREALERINPDRPAV  67
             E+D+EQ+AL+ LQ+LG +   G +++  SL PER +  DVVL  RL  AL +IN+D  + 
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  68    AIEEALRQVLTPESPALIENNRRFHQMLTDGVDV-SWMGPERQQNGKVSLIDIQNLDNND  126
              IE AL+++    SP L+ENN  FH+ L +G+++    +  +     V +ID++  +NND
Sbjct  67    FIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNND  126

Query  127   WLAVNQFTVIENKHERRPDIVLFVNGLPLVVIELKDPGTVQATLRAAFNQLQTYKQEIPS  186
              LAVNQ+T+++    +RPDIVLF+NGLP+VVIELK++      +  +++QL+TYK  IP 
Sbjct  127   FLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  187   LFTYNEILVISDGMQARFGTLTSGWDRFMPWRTIDGTDLYREPGNDKQSEGVVQPGMKTL  246
             LFT+NE+LV SDG++++ G+LT+  DRFM WR+ DG        +   S G+  +++  L
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG--------QTESSPGL--ASLDVL  236

Query  247   IRGMFERRRFLDYVLNFITFEQVDEGTAGIAKKAAGYHQYHAVNQALASTLVACGIEADA  306
             I+GM++   +LD +  F+ F+  D+G + I+K  A+YHQY AVN+A+  +L+A + ++D+
Sbjct  237   IHGMLNPETLLDLIRYFVLFQ--DDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDG  294

Query  307   STLYARFQEAEAADPFAVREPKAEYRPKLGDRRVGVIWHTQGSGKSLSMVFYAGKVIRHP  366
                                             + GVIWHTQGSGKSL+MVF++GK+I+  
Sbjct  295   --------------------------------KGGVIWHTQGSGKSLTMVFFSGKLIQ--  320

Query  367   AMQNPTIVVITDRNDLDNQLFATFA-----ANRQILRQTPVQAESRGHLRELLKVAAGGV  421
              ++NPT+VV+TDRNDLDNQL++TF      + + +LRQTP QAE+R +L+ LL V +GG+
Sbjct  321   MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGI  380

Query  422   IFTTIQKFFPEKKGDTYPTLSERHNIVVIADEAHRSQYDFID-----------GFARHMR  470
             +FTT+QKF PE++  T ++L+ER N++V+ADEAHR+QY+F             G+A+ +R
Sbjct  381   VFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLR  440

Query  471   DALPNASFIGFTGTPIEKDDRNTRAVFGDYISIYDIQRAVEDGATVPIYYESRLARIELD  530
             DALPNA+F+GFTGTP+   D+NT+ VFG+YI +YD+ +AV DG+TV IYYESR+  ++L 
Sbjct  441   DALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP  500

Query  531   EAEKPRLDeafe-eiteteedevrrerLKSKWASLEALVGAEKRIRLVAKDLVEHWERRR  589
             ++    LD     +    +++E  ++RLKSKW+ +EAL GA  R+  +AKD+++H E R+
Sbjct  501   QS----LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQ  556

Query  590   EAMLGKGMIVCMSRRICVEMYRAITALRPDWHSDDDNRGKIKVVMTGSASDPSDWQPHIR  649
             +AM GKGMIV MSRRI V++Y  I  L+P+WHSDDD++G IKVVMTGS+SDP+  Q HI 
Sbjct  557   QAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIG  616

Query  650   NKQRRDLIARRFKDPDDELELVIVRDMWLTGFDAPPLHTMYIDKPMNGHNLMQAIARVNR  709
              K+RR+L+ +R KD DDEL+LVIVRDMWLTGFD P++HTMYIDKPM+GHNLMQAIARVNR
Sbjct  617   PKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNR  676

Query  710   VFRDKPGGLVVDYLGIADSLKKALAVYAESGGRGKAAIDQAEAVAVMKEKYEVVCGILHG  769
             VF+DKPGGL+VDY+GIA+SLK AL  Y+ES +++++AID   AV +M  KY+V+ ++L  
Sbjct  677   VFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYN  735

Query  770   FDYRRLLAAAPDERLQGIAEAMDFILG-REDGKKRYlqavaalskafalaVPHEEALAIR  828
             +DY ++ +    ER   I+++MD+++G  ED ++R++++V+ L+KAFAL   +  A  + 
Sbjct  736   LDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELN  795

Query  829   DEVGLFQEIRAALIK----ATVSSaerapeeveaavrQLVSRAISGCEVVDIFAAAGLEK  884
             DE+++F+ ++A+L+K    +  + + ++P EVEA + QLVS+++   +V+D++ + GLE+
Sbjct  796   DEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQ  855

Query  885   PDISILSDEFLEEVRSLPQKNLAVETLKKLLQDEIQVRLRKNVVQSRAFSELLQRALNKY  944
             PD+SILSD+FL +V +L QKN+AVE L++LL+++++  ++ N   S+ FSE+L  ++NKY
Sbjct  856   PDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKY  915

Query  945   HNRAIEAAQVIEELIAIARQVREATRRGEKLGLSEDEVAFYDALAANESAVEVLGDETLK  1004
             ++R+IE+++VIEELI +A+++++  +RG+ LGL+ DE+AFYDALA++E+A E +GD  L+
Sbjct  916   NSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELR  975

Query  1005  EIAQVLVESVRKSVTVDWNRRESARAQLRVLVKRILRKYGYPPDKQEQAVELVLSQTEVL  1064
              IA+ L  +V+ ++ VDW++R+SA+A++RV V+R+L+KYGYPPD Q  AVE V+ Q+E++
Sbjct  976   AIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELM  1035

Query  1065  CGE  1067
               +
Sbjct  1036  ANN  1038

98) Rfer_0028 in NC_007908


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  802 bits (3037),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 483/1058 (46%), Positives = 752/1058 (72%), Gaps = 43/1058 (4%)

Query  3     ESDLEQLALTWFQDTGWDYRAGPDIAPDSDSPQRSDYRQMLLQGELREALSRLNPQVPAA  62
             E DLEQ+AL W+Q  G DY+ G +I+  S +P+R   ++++L+  L  AL ++N+++ + 
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  63    VLDDVAHQLSKPDHPSLIQSNRAFHEALvggvpvev-evngerrgdrvvLVDFDTPERNR  121
              ++   H+L+    P+L+++N +FHE L+ G+ +E  + +G+   + V ++DF+ P+ N 
Sbjct  67    FIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNND  126

Query  122   FLVVNQFTVQGSKQPRRPDLVCFINGLPIAVIELKNLAAEQVGVQDAFHQLQTYKDELAD  181
             FL VNQ+T+  +   +RPD+V FINGLPI VIELKN + E VGV+D++HQL+TYK  +++
Sbjct  127   FLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  182   LFVTNEALVASDGLHARIGSLTASFERFLPWRTVKNENDRPLLEFELEKVVRGFFAPALL  241
             LF  NE LV+SDG++++ GSLTA+++RF+ WR+   + + +     L+ +++G + P  L
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETL  246

Query  242   LDYLRYFVLF-EMADGQVVKKIAAYHQFHavraavkaaviaatppatnaaQEQWASYAER  300
             LD +RYFVLF + + G++ K +AAYHQ+ AV  AV                 ++A  A  
Sbjct  247   LDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAV-----------------DRALLASS  289

Query  301   VKPGSRMGGIVWHTQGSGKSISMVCFAAKLMQQPEMHNPTLVVVTDRNDLDGQLFQTFV-  359
              + +++ GG++WHTQGSGKS++MV F++KL+Q   ++NPTLVVVTDRNDLD QL+ TFV 
Sbjct  290   EQGDGK-GGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVK  346

Query  360   ----GARSLLREQPQQAGSRDELRALLAGRPSGGIIFTTVQKFTPDAGEEVFPLLSERNN  415
                 ++++LLR+ P+QA +R EL++LL+   SGGI+FTT+QKF P+  E   + L+ER+N
Sbjct  347   SKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKN  405

Query  416   IVVMADEAHRSQYGFRAVLDKKTGKYKYGFAKHLRDALKNATFVGFTGTPIEAGDHDTRA  475
             ++VMADEAHR+QYGF A  D K    KYG+AK LRDAL NATFVGFTGTP+ + D +T+ 
Sbjct  406   VIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQM  465

Query  476   VFGEYVSIYDIQDAVDDGATVPIFYESRLAKLNLNQ-VEMEKLNadvedvfedeedaali  534
             VFG+Y+ +YD+ +AV DG+TV I+YESR+  LNL Q ++++       + + ++++  + 
Sbjct  466   VFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDE----AYNDITEDQEEDVK  521

Query  535   eaeKTRWAALEKLVGAKERVDLVAADIVQHFEARNTAVAGKGMVVAMSREICARLYAAII  594
             +  K++W+ +E L GAK RV+ +A DI+QHFE+R+ A+ GKGM+V+MSR I   LY  II
Sbjct  522   QRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEII  581

Query  595   KLRPDWHSDDPAQGAIKVVMTGSAADATLLQPHIYNSAAKKLLERRFKDATDPLKLVIVR  654
             +L+P+WHSDD  +G IKVVMTGS++D+T +Q HI     ++LLE+R KD  D L+LVIVR
Sbjct  582   RLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVR  641

Query  655   DMWLTGFDVPCLHTMYIDKPMRDHNLMQAIARVNRVFRDKEGGLVVDYIGIAAELRKALR  714
             DMWLTGFDVP +HTMYIDKPM++HNLMQAIARVNRVF+DK GGL+VDY+GIA  L+ AL+
Sbjct  642   DMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALK  701

Query  715   TYTESKGKGQPTLDATEALAKLQELMEVARHLLHGFDFSAYRTQATT----LLLPAANFV  770
              YTES +++Q ++D+  A+  +    +V +++L  +D+S + ++  +     +  + ++V
Sbjct  702   EYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYV  760

Query  771   LGL-DDGKKRWADVVLAITKAFSLCGTLDDAALLREEIAFFQAIKAVIAK----ATTSDA  825
             +GL +D ++R    V  + KAF+LC+T   A  L +EIAFF+A+KA + K    +  + +
Sbjct  761   IGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKT  820

Query  826   KLSEEGRNAVLKQILDNAVVAEGVEDIFKLAGLERPDIGILSDAFLEEVRQLPQRNFAVE  885
             + +    +A ++Q++ ++VV+E+V D+++  GLE+PD++ILSD FL +V  L Q+N AVE
Sbjct  821   RKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVE  880

Query  886   LLQKLLNDQVKSRMRTNVVMERKFSERLQAALNRYLSRAVESAQVIEELIAMAKEFREAA  945
             LL++LL++QVKS M+TN  + ++FSE L  ++N+Y SR++E+++VIEELI +AK++++  
Sbjct  881   LLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQ  940

Query  946   LRGNKLGLNTSELAFYDALTDNESAVREMDDEVLKKIAVEITEKLRNSTSVDWQKRESVR  1005
              RGN LGLN+ E+AFYDAL+ +E+A   M+D  L+ IA E+T  ++++ +VDW KR+S +
Sbjct  941   QRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAK  1000

Query  1006  ARLRNLVRITLRRYKYPPDMQEEAIRLVLEQAERLSDA  1043
             A++R  VR  L++Y YPPD+Q  A+  V+EQAE +++ 
Sbjct  1001  AKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

99) PSM_A2849 in NC_014803


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  800 bits (3028),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 470/1067 (45%), Positives = 757/1067 (71%), Gaps = 50/1067 (4%)

Query  3     TEDQLEQLCLNWFQGIGYQYICGYDIAPNEPAAERSDYRQVILHGRLLAQLKVINPHIPL  62
              ED+LEQ+ L+W+Q++GY+Y  G +I+    ++ER   ++V+LH RL   L+ IN++I  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    ATLEEVALNLGKAETPILIKNNKGFHQALLQGVKVE-YKVNDESKTDNTRTGYVQLVDFN  121
               +E    +L    +P L+ NN  FH+ L++G+ +E Y  +++S  +      V+++DF+
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEI-----VKIIDFE  120

Query  122   DVNKNQFLVVNQFTLTGTKGNRRPDVMVFINGLPLALLELKNPIDNNADIWQAFQQIQTY  181
               ++N+FL VNQ+T+     ++RPD+++FINGLP+ ++ELKN+ ++  ++ ++++Q++TY
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  182   KDELPDLFIFNEALVVSDGLTARVGSLTANKERFVPWRTVNSEDDKPLFEYQLETLVKGF  241
             K  +P+LF FNE LV SDG+ ++ GSLTAN +RF+ WR+ +++ + +     L+ L+ G 
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  242   FQPALFLDYLRHFILFEEDDGKTIKKI-AGYHQFHAVRAAVKATLIAEAKAQLAEPRANY  300
             ++P  +LD +R F+LF++D+   I KI A+YHQ+ AV  AV  +L+A +           
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASS-----------  289

Query  301   VDKVQAGSGKAGVVWHTQGSGKSISMLCYAGKLMAQPQMNNPTIVVVTDRNDLDGQLYNT  360
                 + G GK+GV+WHTQGSGKS++M+ ++GKL+    +NNPT+VVVTDRNDLD QLY+T
Sbjct  290   ----EQGDGKGGVIWHTQGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYST  343

Query  361   FCMAADT-----LKQTPVQAGDRDELRDILTARQAGGIIFTTIQKFALLADEKSHPKLSE  415
             F  + +      L+QTP QA  R EL+ +L+  ++GGI+FTT+QKF    +E + + L+E
Sbjct  344   FVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTE  402

Query  416   RHNIVVISDEAHRSQYGDKAKLNSKTGEYTFGYSKHLRDALPQATFIGFTGTPIDAADKD  475
             R N++V++DEAHR+QYG +AK + K     +GY+K LRDALP+ATF+GFTGTP+ ++DK+
Sbjct  403   RKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKN  462

Query  476   TRAVFGDYVSVYDIQDAVDDGATVPIYYESRLAKLDINQA-DIESLNddvdeviedeedi  534
             T+ VFG+Y+ VYD+ +AV DG+TV IYYESR+  L++ Q+ D++       + I ++++ 
Sbjct  463   TQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDE----AYNDITEDQEE  518

Query  535   SSRENTKSKWAALEKLVGSEPRVNLVAKDLVAHFSERTNTMQGKGMIVAMSREICADLYN  594
               ++  KSKW+ +E L G+ PRV+ +AKD++ HF  R ++M+GKGMIV+MSR I  DLY+
Sbjct  519   DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYD  578

Query  595   AIIAIKPDWHDDDPAKGAIKIVMTGSASDKAKLQPHIYNKETKKLFEKRFKDVNDPLQLV  654
              II +KP+WH DD  KG IK+VMTGS+SD + +Q HI  K  ++L+EKR KDV+D LQLV
Sbjct  579   EIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLV  638

Query  655   IVRDMWLTGFDAPNCHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKA  714
             IVRDMWLTGFD P+ HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK 
Sbjct  639   IVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKE  698

Query  715   ALHTYTNSNGRGQPTHDAHEAFAVLLEKMDIVRGMLHGCDYSDYETHALQ----LLPKVM  770
             AL  YT+S+ ++Q + D++ A  ++L K D++++ML   DYS ++++        +++ M
Sbjct  699   ALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTM  757

Query  771   NHILSLPNSGDGKLDGKKRFLDVMAALSKAYTLCGTLDEVAPLKTEIAFFAAVKSALGKF  830
             + +++L +      D ++RF+  ++ L+KA++LC+T      L+ EIAFF AVK++L K+
Sbjct  758   DYVIGLGE------DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKL  811

Query  831   TTVDK----RRTDEDKNTALKHIIDNALIAEGVDDIFKLVGLDKPNIGLLSPEFMEDVAN  886
                 K    R+T  + ++ +++++ +++++E+V D+++ +GL++P++++LS +F+ DV  
Sbjct  812   LQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEG  871

Query  887   MKEKNLAVDLLERLLRDEIKARMKTDVVSEKKYSDRILETLRKYHNRAIETAQVIEELIk  946
             +K+KN+AV+LL+RLL++++K+ MKT+    K++S+ + +++ KY++R+IET++VIEELI+
Sbjct  872   LKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQ  931

Query  947   makdmaadaemaeNSGLNTDEIAFYRALIQNESAVRELGDDSLRSLAKEVTEKLRKSTTV  1006
             +AKD+  + + +++ GLN+DEIAFY AL  +E+A   +GD  LR++A E+T  ++ +  V
Sbjct  932   LAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGV  991

Query  1007  DWQVRDSVRAKLRNLVRRALRKFKYPPDKADEAIELCLKQAEALSNS  1053
             DW  RDS +AK+R  VRR L+K+ YPPD    A+E  + QAE ++N+
Sbjct  992   DWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

100) VFMJ11_B0055 in NC_011185


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  799 bits (3023),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/1044 (47%), Positives = 765/1044 (74%), Gaps = 29/1044 (2%)

Query  2     KITEEMLEDHCMVWFSNLGYQTLHGGDLEPTGKAPERQSLSDVVLKPRLKKSLMKINPHL  61
             ++ E+ LE+  + W+ +LGY+   G ++  T+ +PER+S  DVVL  RL K+L KIN+++
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  62    PEDCIDTAIDTL-LTTVPSVAHANHTFHRQLIDGIQVE-YEDSEGRPKGDKVYLVDFT-N  118
                 I+ A++ L L   P++ + N TFH +LI+GI++E Y+D EG++  + V ++DF   
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDD-EGQSIVEIVKIIDFEYP  122

Query  119   QNNDWLALRQFSVDGVTNGEKDNRRPDIVVFLNGLPISVLELKSPADEKADVWKAYNQIQ  178
             QNND LA+ Q+++    NG+  ++RPDIV+F+NGLPI V+ELK++++E  +V  +Y+Q++
Sbjct  123   QNNDFLAVNQLTI---VNGD-YKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLE  178

Query  179   TYKNVLRDLFVFNESVIISDGTEAYIGSLTADRDRFTPWRTIDGSRDDSEDTLALEVMVR  238
             TYK  + +LF FNE ++ SDG ++  GSLTA+ DRF  WR+ DG  + S +  +L+V+++
Sbjct  179   TYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIH  238

Query  239   GFFNQELLLDYLQYFISFECDNEKVIKKI-AGYHQFHGVRAAIESTIRATRHDGDQRCGV  297
             G +N E LLD ++YF+ F+ D    I KI A+YHQ+ +V  A++ ++ A+ ++GD + GV
Sbjct  239   GMLNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGV  298

Query  298   FWHTQGSGKSLSMGFYSAKLMAAPEMRNPTIVVVTDRNDLDEQLFETF-----SINAELL  352
             +WHTQGSGKSL+M F+S+KL+    + NPT+VVVTDRNDLD+QL+ TF          LL
Sbjct  299   IWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLL  356

Query  353   RETPIQAKDRHHLKELLDNRQSGGIFFTTMQKFSPDEGESRYPALTERNNIVVMADEAHR  412
             R+TP QA  R +LK LL   +SGGI FTTMQKF P++ E+  +ALTER+N++VMADEAHR
Sbjct  357   RQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHR  415

Query  413   SQYGLKARVDSKTGEMKYGYAQHLRDALPNAGFIGFTGTPVEMEDRDTRVVFGQDVSVYD  472
             +QYG++A+ D K   +KYGYA+ LRDALPNA F+GFTGTPV   D++T++VFG+ + VYD
Sbjct  416   TQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYD  475

Query  473   IEQAQRDGATKKLYYESRLIKLDMDKSIKEEDLDQAVDDLVAEYDEDDQSRTKAKNAALE  532
             + QA  DG+T K+YYESR+I L++ +S+   DLD+A +D+  + +ED + R K+K + +E
Sbjct  476   MTQAVADGSTVKIYYESRVIPLNLPQSL---DLDEAYNDITEDQEEDVKQRLKSKWSRIE  532

Query  533   ALVCAEDRIDRLARDLLTHFGKREEVTLTKAMAVCISREACVQLYDKLRELKPEWHDEDP  592
             AL  A  R++ LA+D++ HF  R++    K+M V +SR   V+LYD +  LKPEWH +D 
Sbjct  533   ALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD  592

Query  593   EKGCMKVIMTGTSSDPEkyqkhihkkpiqkkiakrikDPDSELKLVIVCDMWLTGFDAPC  652
             +KG +KV+MTG+SSDP  +Q+HI  K  ++ + KR+KD D EL+LVIV DMWLTGFD P 
Sbjct  593   DKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPS  652

Query  653   LNTMYIDKPLKGHNLMQAIARVNRVFRDKEGGLIVDYLGIAPELRSAVRNYTASGQGEPT  712
             ++TMYIDKP+KGHNLMQAIARVNRVF+DK GGLIVDY+GIA  L+ A+++YT S+Q++ +
Sbjct  653   MHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTA  712

Query  713   IDLAQALEVTMTKLDVCRGIMHGFDYSDYKTNTLG----LLAKAMNHILSL-EDGKKRFD  767
             ID  +A+E+ + K DV ++++  +DYS ++++  +     ++++M+ +++L ED ++RF 
Sbjct  713   IDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  768   KAALSLSKAFSLCSCMDEAKDIKEEIAFFETLRAAIKK----TTTSKQRMSDENVQTALR  823
             K+   L+KAF+LC+    A+++++EIAFF +++A++ K       +K R +  +V++ + 
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  824   QVVSESIVSGDIVDVFESAGLNKPNISILDDDFLAEVEKIEHKNLAVEMLKKLIQDEIKT  883
             Q+VS+S+V+ D++DV+++ GL++P++SIL DDFL +VE + +KN+AVE+L++L+++++K+
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  884   RTVKNAVAYKTFSEMLRNSLDKYRNRSVETSVVIEELIKLAKELRDSADRGDDLDLTKEE  943
                 NA   K FSEML NS++KY +RS+ETS VIEELI+LAK++++  +RG++L+L  +E
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  944   LAFFDALLANESAKEAMKQEDILFIARELAAEIRKSAQPDWTKRKNLRSRMRIKIKQILK  1003
             +AF+DAL ++E+AKEAM + ++  IA+EL+  ++ +   DW+KR + +++MR+ ++++LK
Sbjct  953   IAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLK  1012

Query  1004  RTGYPPDCQEDAVELVLQQAELVN  1027
             + GYPPD Q  AVE V++QAEL+ 
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAELMA  1036

101) H650_18270 in NC_021500


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  799 bits (3025),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 478/1056 (46%), Positives = 755/1056 (72%), Gaps = 39/1056 (3%)

Query  2     LSEDDLEQQCLQWFVEQDWEVLHGPDIAPDGDNPLRASFHDVFLRPVMLEQLQTINPHLP  61
             ++EDDLEQ  L+W+   + +   G +I+  +  P R S  DV L+  +   L+ IN+++ 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    VSVLEEVILRITRPESPDLVVSNKAFHHLLLDGVPVE-YKRDDKVIHDNALLMDFNHPDN  120
                +E  +  +T   SP+L+ +N +FH+ L++G+ +E Y  +++ I +   ++DF+ P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  121   NRFMVVNQVAIQGIKQVRRPDVIGYINGLPVAVIELKSPIDANADIWAAFNQLQTYKNEL  180
             N F+ VNQ++I      +RPD++ +INGLP+ VIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEALVVSDGQNARIGSLTADEERFLPWKTVANEDDKPQFDWQLKTVVQGFFNRA  240
             ++LF  NE LV SDG N++ GSLTA+ +RF+ W++   + + +     L  +++G +N  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  241   LLLDYIRYFVLFESDGKRLIKKI-AAYHQFHAVREAVAATIVASTGKHLPLRSNITPGSK  299
              LLD IRYFVLF+ DGK  I KI AAYHQ+ AV  AV  +++AS+            G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSE----------QGDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+VVVTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   QDLLKQTPLQANDRDELRELLNARESGGIIFTTVQKFAPLDSEQSHPALNQRSNIVVISD  414
             ++LL+QTP QA+ R EL+ LL+  ESGGI+FTT+QKF P ++E + +AL +R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLSATLDRETGVYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYV  474
             EAHR+QYG++A  D      KYGYAK +RDALPNA+F+GFTGTP+AS DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELETLSDQVDELVEDEETGQQEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L +  +++ ED+E + +++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSEPRIKQVAADLVQHFETRNAAMNGKAMIVAMSRDICVKLYDAIVAIRPEWHS  594
             R+E L G+ PR+  +A D++QHFETR+ AM+GK+MIV+MSR I V LYD I+ ++PEWHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EDVEQGAIKVIMTGSASDKDHLQSHIYNKQTKKRLEARFKDLNDQLKLVIVRDMWLTGFD  654
             +D ++G IKV+MTGS+SD   +Q HI  K+ ++ LE R KD++D+L+LVIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVF+DKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTVDAREAFAILLEKMDVIHGMFARSAGKPGFDYTGFSRDPLA--F--LRDAVNYILG  770
             +QT++D+  A  ++L K DVI++M+        +DY+ F+ D  +  +  + ++++Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLY------NLDYSKFNSDKKSERYYTISNTMDYVIG  762

Query  771   L-DDGKKRYLDVSLAMSKAWSLCNTIDEAKPLQEEFAFLSAIRVGLIKL-----DPKAKF  824
             L +D ++R++     ++KA +LC T   A+ L++E+AF+ A++ GL+KL     + K++ 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  825   SQSEKNSLLSKILDNAVVATGVEDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884
             + +E ++ +++++ ++VV+ +V DV+   GL++P++++LSD+FL +V  + Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  885   EKLLNDGIHARSGNNVVQQKKYSDRLKAVLVKYNNRAIETAQVIEELIQMAKEFQEAMAR  944
             ++LL++ + +    N    K++S+ L   + KYN+R+IET++VIEELIQ+AK++++   R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  945   DDALGLNPDEIAFYDALAENESAVRKLGDDILKKLAIEVTAQLRKSTTVDWQVRESVRAR  1004
             ++ LGLN+DEIAFYDALA +E+A   +GD  L+ +A E+T  ++ +  VDW  R+S +A+
Sbjct  943   GNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAK  1002

Query  1005  LRVLVRQTLRKYKYPPDKTPYTVELILKQAEVVSNS  1040
             +RV VR+ L+KY YPPD    +VE ++ QAE+++N+
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

102) EcE24377A_0289 in NC_009801


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  798 bits (3020),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/1056 (47%), Positives = 761/1056 (73%), Gaps = 38/1056 (3%)

Query  2     LSEDDLEQQSLQWFAELGWEVLHGPDIAPDGNNPLRASFHDVFLRPVLLEQLQKINPHLP  61
             ++EDDLEQ +L+W+  LG +   G +I+  +  P R S  DV L+  L   L+KIN+++ 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    VAVLDEVILRIAHAQSPDLVVSNKAFHHLLLDGVPVQ-YKQDDKVIHDKALLMDFNHPNN  120
                ++  +  ++  +SP+L+ +N +FH+ L++G+ ++ Y ++++ I +   ++DF+ P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  121   NHFTVVNQVAIQGTKQVRRPDVICYINGLPVVVIELKSPIDANADIWAAFNQLQTYKNEL  180
             N+F  VNQ++I      +RPD++ +INGLP+VVIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEALVVSDGYNARIGSLTANEERFLPWKTLSNEDDKPLFEWQLETVVKGFFNRE  240
             ++LF  NE LV SDG N++ GSLTAN +RF+ W++   + + +     L+ ++ G +N E
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  241   LLLDYIRYFILFESDGKRLIKKI-AAYHQFHAVREAVTATIVASTGKHLPLRSNITPGSK  299
              LLD IRYF+LF+ DGK  I KI AAYHQ+ AV  AV  +++AS+            G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSE----------QGDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+VVVTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   QDLLKQEPLQANDRDQLREMLNVRESGGIIFTTVQKFAPLDGEQTHPALNLRSNIVVISD  414
             ++LL+Q P QA+ R +L+ +L+V ESGGI+FTT+QKF P + E T +AL  R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLSATLNRETGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYV  474
             EAHR+QYG++A  +    + KYGYAK +RDALPNA+F+GFTGTPV+S DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVEDGATVPIYYESRLAKLDLNHEELETLSNQVDELVedeetdqkektkSDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L +  +++ ED+E D K++ KS WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSEPRINEVAADLVQHFEARNATMNGKAMIVAMSREICVKLYDALVALRPEWHS  594
             R+E L G+ PR++ +A D++QHFE+R+ +M+GK+MIV+MSR I V LYD ++ L+PEWHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   DDVEKGEIKIIMTGSASDNKFLQPHIYNKQTKKRLEARFKDLNDPLKLVIVRDMWLTGFD  654
             DD +KG IK++MTGS+SD   +Q HI  K+ ++ LE R KD++D L+LVIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTVDAHEAFSILLEKLDVIHGMFAKTPTAAGFDYTGFAEV--PQRF--LLKAADYVLG  770
             +QT++D++ A  ++L K DVI++M+ +      +DY+ F     ++R+  + ++ DYV+G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYYTISNTMDYVIG  762

Query  771   L-DDGKKRFFDVVLAMNKAWSLCSTLDEAKPLQKEIAFLSAVKVAIIKLTTTDK----KF  825
             L +D ++RF+  V  + KA +LC+T   A+ L+ EIAF+ AVK +++KL    K    + 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  826   SQSEKNTLLGKILDNAIIATGVDDVFALAGLDKPNIGLLSDEFLEEVRELPQRNLAVELL  885
             + +E ++ + +++ +++++ +V DV+   GL++P++++LSD+FL +V  L Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  886   EKLLNDGIHARTKNNVVQEKKYSDRLKAVLLKYNNRAIETAQVIEELIQMAKEFQEAMAR  945
             ++LL++ + +  K N    K++S+ L   + KYN+R+IET++VIEELIQ+AK++++   R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  946   DEALGLNPDEIAFYDALAENESAVRELGDDVLKKLAIEVTLKLRQSTTVDWQVRESVRAR  1005
             ++ LGLN+DEIAFYDALA +E+A   +GD  L+ +A E+T  ++++  VDW  R+S +A+
Sbjct  943   GNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAK  1002

Query  1006  LRILVRQTLRKYKYPPDKTPYAVELILKQAEVVSNS  1041
             +R+ VR+ L+KY YPPD    AVE ++ QAE+++N+
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

103) TSC_c12320 in NC_014974


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  797 bits (3017),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 453/976 (47%), Positives = 726/976 (75%), Gaps = 39/976 (3%)

Query  6     GADLIQRNRAVHRMLVDGVTVEYRTSEGAIRGAQARVIDFDDPENNDWLAVNQFTVVENR  65
             +++L++ N + H  L++G+ +E    EG       ++IDF+ P+NND LAVNQ+T+V+  
Sbjct  80    SPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGD  139

Query  66    HRRRPDVVLFVNGLPLAVIEFKNPTDKKATIWSAYRQLQTYKAEIPSLLVYNEALVISDG  125
              ++RPD+VLF+NGLP+ VIE+KN+T+    +  +Y+QL+TYK  IP L+ +NE LV SDG
Sbjct  140   YKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDG  199

Query  126   LEARIGTLTADRDRFMPWRTITGEDVAPAEMPQLEVLLKGVFERRRFLELVRGFVVFEDE  185
             ++++ G+LTA+ DRFM WR+  G+  +++ ++ L+VL+ G+++   +L+L+R FV+F+D+
Sbjct  200   INTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQDD  259

Query  186   GGGKLAKKMAGYHQFHAVRVAVEETLRAAARYEAGRQPGGKPGDRRIGVVWHTQGSGKSL  245
             G G ++K +A+YHQ+ AV  AV+ +L           +++  GD + GV+WHTQGSGKSL
Sbjct  260   GKGHISKILAAYHQYYAVNKAVDRAL----------LASSEQGDGKGGVIWHTQGSGKSL  309

Query  246   TMVFYAGRIIRHPRMENPTIVVLTDRNDLDGQLFGVFSRCRE-----LLGQDPIQAESRA  300
             TMVF++G++I+   ++NPT+VV+TDRNDLD QL++ F + +      LL Q P QAE+R 
Sbjct  310   TMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRK  367

Query  301   HLRELLQGRQSGGVIFTTIQKFLPEEKGDRYPQLSDRRNIVVIADEAHRSQYDFID----  356
             +L+ LL + +SGG++FTT+QKF PE++    + L++R+N++V+ADEAHR+QY+F      
Sbjct  368   ELKSLL-SVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDD  426

Query  357   -------GFARHMRDALPNASFIGFTGTPLELDDRNTRSVFGDYISIYDIQRAVLDGATV  409
                    G+A+ +RDALPNA+F+GFTGTP+   D+NT+ VFG+YI +YD+ +AV DG+TV
Sbjct  427   KGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTV  486

Query  410   PIYYESRLAKLDLPEELKPKvdeefeevteseeverkeRLKTKWAQLEAVVGAEKRLRLV  469
              IYYESR+  L+LP+ L   +DE ++++TE +E + K+RLK+KW+++EA+ GA  R+  +
Sbjct  487   KIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEAL  544

Query  470   AQDIVTHFEQRLEALDGKAMIVCMSRRICVELYNEIVRLRPAWHNDGDDKGVIKVVMTGS  529
             A+DI+ HFE R +A+ GK+MIV MSRRI V+LY+EI+RL+P WH+D+DDKGVIKVVMTGS
Sbjct  545   AKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGS  604

Query  530   ASDPVEWQSHIRNKQRREFLAKKRFRDPADPFKLVIVRDMWLTGFDCPSLHTMYLDKPMR  589
             +SDP   Q HI  K+RR++L K R +D  D ++LVIVRDMWLTGFD PS+HTMY+DKPM+
Sbjct  605   SSDPTSFQRHIGPKKRRNLLEK-RMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMK  663

Query  590   AHGLMQAIARVNRVFRDKPGGLVVDYLGLAHELKAALATYTESGGTGRTAIDQSEAVAVM  649
             +H LMQAIARVNRVF+DKPGGL+VDY+G+A+ LK AL  YTES+  ++TAID   AV +M
Sbjct  664   GHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESD-QAQTAIDTDKAVELM  722

Query  650   EEKYEICRNLFHGFDWSLWKTGRPEERLALLPAAQEHILA-QENGKERLLQAVSELSRAF  708
               KY++ ++++  +D S  ++++  ER   ++ + + +++  E+ ++R++++V+EL++AF
Sbjct  723   LLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAF  782

Query  709   ALALPHEKALAIRDDVAFFQAVRAALAK-----RASSEERTEEDLDHAIRQIVSRALMPE  763
             AL   +  A  + D++AFF+AV+A+L K     + +   +T  +++  I Q+VS++++ E
Sbjct  783   ALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTE  842

Query  764   GVVDLFAAAGLKKPDISILSEEFLAEVRGMPQRNLAVELLRKLLEGEIKTRRKKNVVQAR  823
             +V+D++ + GL +PD+SILS++FL +V G+ Q+N+AVELL +LL G++K+  K N   ++
Sbjct  843   DVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSK  902

Query  824   SFAEMLEQAIRRYQNRAVEAAQVIEELIALAREMREADRRGQALGLSEEELAFYDALETN  883
              F+EML ++I +Y++R++E+++VIEELI LA+++++ ++RG+ LGL+ +E+AFYDAL ++
Sbjct  903   RFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASH  962

Query  884   DSAVKVLGEPTLREIARELVDTVRRNVTIDWTERENVRAHlrrlvkrvlrkYGYPPDKQE  943
             ++A   +G+  LR IA+EL  TV+ N+ +DW+ R++ +A +R  V+R+L+KYGYPPD Q 
Sbjct  963   ETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQK  1022

Query  944   RATQTVLEQAEVLSEQ  959
              A + V+EQAE+++++
Sbjct  1023  MAVEQVVEQAELMANN  1038

104) PCC21_032460 in NC_018525


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  797 bits (3015),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 478/1056 (46%), Positives = 750/1056 (72%), Gaps = 39/1056 (3%)

Query  2     LSEDDLEQQCLKWFAEQDWEVLHGPDIAPDGDNPLRASFHDVFLRPVMLEQLQAINPHLP  61
             ++EDDLEQ  L W+   + +   G +I+  +  P R S  DV L+  +   L+ IN+++ 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    VSVLEEVILRITRPESPDLVVSNKAFHHLLLDGVPVE-YKREDKTVHDKALLMDFNHTDN  120
                +E  +  +T   SP+L+ +N +FH+ L++G+ +E Y  E++++ +   ++DF+  +N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  121   NRFMVVNQVAIQGTKQVRRPDVIGYINGLPVVVIELKSPIDANADIWAAFNQLQTYKNEL  180
             N F+ VNQ++I      +RPD++ +INGLP+VVIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEALVVSDGQNARIGSLTADEERFLPWKTVANEDDKPQFDWQLKTVVQGFFNRE  240
             ++LF  NE LV SDG N++ GSLTA+ +RF+ W++   + + +     L  +++G +N E
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  241   LLLDYIRYFVLFEYDGKRLIKKI-AAYHQFHAVREAVAATIVASTGKHLPLRSNITPGSK  299
              LLD IRYFVLF+ DGK  I KI AAYHQ+ AV  AV  +++AS+            G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSE----------QGDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+VVVTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   QGLLKQTPLQANDRDELRELLNARESGGIIFTTVQKFAPLDSEQSHPALNLRSNIVVISD  414
             +GLL+QTP QA+ R EL+ LL+  ESGGI+FTT+QKF P ++E + +AL  R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLSATLDRETGVYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYV  474
             EAHR+QYG++A  D      KYGYAK +RDALPNA+F+GFTGTP+AS DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNYEELETLSDQVDELVEDEETGQQEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L  + L+ L +  +++ ED+E + +++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLP-QSLD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSEPRIKQVAADLVQHFETRNAAMNGKAMVVAMSRDICVKLYNAIVAIRPDWHS  594
             R+E L G+ PR+  +A D++QHFETR+ AM+GK+M+V+MSR I V LY+ I+ ++P+WHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   TDVEQGAIKVIMTGSASDKDHLQAHIYNKQTKKRLETRFKDLNDPLKLVIVRDMWLTGFD  654
              D ++G IKV+MTGS+SD   +Q HI  K+ ++ LE R KD++D L+LVIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVF+DKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTVDAREAFAVLLEKIDIIHGMFASLAGKSGFSYEGFSRDPLA----FLRDAVNYILG  770
             +QT++D+  A  ++L K D+I++M+ +L       Y  F+ D  +     + ++++Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYNL------DYSKFNSDKKSERYYTISNTMDYVIG  762

Query  771   L-DDGKKRYLDVSLAMSKAWSLCNTLDEAEPLQEEFAFLSAVRVGLIKL-----DPKAKF  824
             L +D ++R++     ++KA +LC T   A+ L++E+AF+ AV+ GL+KL     + K++ 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  825   GQSEKNSLLSKILDNAVVATGVEDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884
               +E ++ +++++ ++VV+ +V DV+   GL++P++++LSD+FL +V  + Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  885   EKLLNDGIHARSGNNVVQQKKYSDRLKAVLLKYNNRAIETAQVIEELIQMAKAFQEAMAR  944
             ++LL++ + +    N    K++S+ L   + KYN+R+IET++VIEELIQ+AK +++   R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  945   DDALGLNPDEIAFYDALAENESAVRELGDETLRKLAIEVTRQLRKSTTVDWQVRESVRAR  1004
             ++ LGLN+DEIAFYDALA +E+A   +GD  LR +A E+T+ ++ +  VDW  R+S +A+
Sbjct  943   GNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAK  1002

Query  1005  LRILVRQTLRKYKYPPDKTAGAVELILKQAEVVSNS  1040
             +R+ VR+ L+KY YPPD    AVE ++ QAE+++N+
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

105) CSSP291_03040 in NC_020260


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  795 bits (3011),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 472/1056 (45%), Positives = 750/1056 (72%), Gaps = 39/1056 (3%)

Query  2     LSEDDLEQQCLKWFAEQGWEVLHGPNIAPDGDNPLRASFHDVFLRPVMLEQLQSINPHLP  61
             ++EDDLEQ  L W+   G +   G +I+  +  P R S  DV L+  +   L+ IN+++ 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    VAVLEEVILRVAHAQSPDLVVSNKAFHHLLLDGVPVE-YKREDKVVHDKALLMDFNHPAS  120
                +E  +  ++  +SP+L+ +N +FH+ L++G+ +E Y  E++ + +   ++DF+ P +
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  121   NRFMVVNQVAIQGTKQVRRPDVIGYINGLPVAVIELKSPIDANADIWAAFNQLQTYKNEL  180
             N F+ VNQ++I      +RPD++ +INGLP+ VIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEALVISDGQNARIGSLTADEERFLPWKTISNEDDKPQFDWQLKTVVQGFFNRE  240
             ++LF  NE LV SDG N++ GSLTA+ +RF+ W++   + + +     L  +++G +N E
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  241   LLLDYIRYFVLFENDGKRLIKKI-AAYHQFHAVREAVAATIVASTGKHLPLRSNITPGSK  299
              LLD IRYFVLF++DGK  I KI AAYHQ+ AV  AV  +++AS+            G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSE----------QGDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+VVVTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   QDLLKQTPLQANDRDELRELLNARESGGIIFTTVQKFAPRDSEQSHPALNTRSNIVVISD  414
             ++LL+QTP QA+ R EL+ LL+  ESGGI+FTT+QKF P ++E + +AL  R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLSATLDRETGLYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYV  474
             EAHR+QYG++A  D      KYGYAK +RDALPNA+F+GFTGTP+AS DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSEQVDELVEDEETGQQEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L E  +++ ED+E + +++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSAPRIQQVAADLVQHFEMRNAAMTGKAMIVAMSRDICVKLYDAIVAIRPDWHS  594
             R+E L G+ PR++ +A D++QHFE R+ AM GK+MIV+MSR I V LYD I+ ++P+WHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EDVEKGAIKVIMTGSASDNNVLQPHIYNKQTKKRLESRFKDLNDPLKLVIVRDMWLTGFD  654
             +D +KG IKV+MTGS+SD   +Q HI  K+ ++ LE R KD++D L+LVIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVF+DKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTVDAREAFAVLLEKFDIIHGMFSPSAGKPGFKYEGFSRDPLA--F--LRDAVNYILG  770
             +QT++D+  A  ++L K+D+I++M+        + Y  F+ D  +  +  + ++++Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLY------NLDYSKFNSDKKSERYYTISNTMDYVIG  762

Query  771   L-DEGKKRYLDVSLAMTKAWSLCNTLDEAKPLQEEFAFLSAIRVALLKLNPAAKFSQSEK  829
             L ++ ++R++     + KA +LC T   A+ L++E+AF+ A++ +L+KL  ++K +++ K
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  830   NSL-----LSKILDNAVVATGVEDLFALIGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884
              +      +++++ ++VV+ +V D++  +GL++P++++LSD+FL +V  + Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  885   EKLLNDGIHARSGNNVVQQKKYSDRLKAVLLKYNNRAIETAQVIEELIAMAKSFQEAMAR  944
             ++LL++ + +    N    K++S+ L   + KYN+R+IET++VIEELI +AK +++   R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  945   DEALGLNPDEIAFYDALAENESAVRELGDDVLKKLAVEVTLKLRQSTTVDWQVRESVRAR  1004
             ++ LGLN+DEIAFYDALA +E+A   +GD  L+ +A E+T  ++++  VDW  R+S +A+
Sbjct  943   GNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAK  1002

Query  1005  LRILVRQTLRKYKYPPDKTLHAVELILKQAEVVSNS  1040
             +R+ VR+ L+KY YPPD    AVE ++ QAE+++N+
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

106) PT7_2213 in NC_015458


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  792 bits (2999),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 495/1088 (46%), Positives = 759/1088 (70%), Gaps = 73/1088 (6%)

Query  2     TEDQLEQEALGWLADVGYTPRSGPDIAHDGSDPQRSGYTQVTLPQRLRDTIARLNPDIPA  61
              ED+LEQ AL WL  +GY  + G +I+  +  P+R +  +V L +RL  ++ ++N+DI +
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    IARDEALKQVENLDTPVQLAANCAFHKLMVNGVPVQ-YQKDGETRGDLVRLVDWANPKNN  120
                + AL ++    +P  L  N +FH  ++NG+ ++ Y+ +G++  ++V+++D   P+NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  121   EFWAVSQFTIKGPHHTRRPDIILFINGLPLVLLELKNAVNEGADIWKAYDQLQTYKAQIP  180
             +F AV+Q+TI   +  +RPDI+LFINGLP+V++ELKN+ NE  ++  +Y+QL+TYK +IP
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DIFEYNEILVISDGSEARFGSLSANAERFMQWRTIDGVELDPLGQFNELETLVRGLLAPQ  240
             ++F +NE+LV SDG +++ GSL+AN +RFM WR+ DG + ++   +  L+ L++G+L P+
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG-QTESSPGLASLDVLIHGMLNPE  244

Query  241   YLLDYLRYFVLFEDDGT--LIKKIAGYHQYHAVRFAIEEVVRVSRPDvekgkrgkggvvW  298
              LLD +RYFVLF+DDG   + K +A+YHQY AV  A++  +  S  + +          W
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVI----W  300

Query  299   HTQGSGKSITMTCFAARVMQEPAMQNPTIVVITDRNDLDGQLFGVF-----SLSQDLLRE  353
             HTQGSGKS+TM  F+++++Q   ++NPT+VV+TDRNDLD QL++ F       +++LLR+
Sbjct  301   HTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   QPVQATTRQQLRALLGNRPSGGIVFATIQKFMPGEDEDIFPELSDRSNIVVIADEAHRTQ  413
              P QA TR++L++LL+   SGGIVF+T+QKF P ++E   + L++R N++V+ADEAHRTQ
Sbjct  359   TPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQ  417

Query  414   YSFEAKLKTRKNKAGNLATAYHLAPDNEPSTAFATELAGSEDYLSKYQTGYAQHLRDALP  473
             Y+F+AK     +K+  +                            KY  GYA+ LRDALP
Sbjct  418   YGFNAKYD---DKGEGI----------------------------KY--GYAKYLRDALP  444

Query  474   NATFVAFTGTPVSSTDRDTRSVFGNYIHVYDMQQAKEDGATVAIYYESRLAKLKLKETdl  533
             NATFV+FTGTPV+STD++T+ VFGNYI+VYDM QA  DG+TV IYYESR+  L+L ++  
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLD  504

Query  534   eaideevdelaedeeeQTQARLKSKWAALEKVVGAEPRVASVAADLVEHFEERNKAQDGK  593
                  +     ++E  + + RLKSKW+ +E + GA PRV ++A D+++HFE R++A  GK
Sbjct  505   LDEAYNDITEDQEE--DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGK  562

Query  594   AMAVGMSRDICVHLYNEIIKLRPDWHDEDPEQGTIKVIMTGSASDKALLRPHIYSGQVKK  653
             +M V MSR I V+LY+EII+L+P+WH +D ++G IKV+MTGS+SD + ++ HI  G  K+
Sbjct  563   GMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHI--GPKKR  620

Query  654   R--LEKRFKDPADPLKMVIVRDMWLTGFDAPCVHTMYIDKPMKGHNLMQAIARVNRVFRD  711
             R  LEKR KD  D L++VIVRDMWLTGFD P +HTMYIDKPMKGHNLMQAIARVNRVF+D
Sbjct  621   RNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKD  680

Query  712   KQGGLVVDYIGIGNELKAAMKEYTASKGRGKPTVDAYEALAVMLEKLDVLRAMLHGYDYS  771
             K GGL+VDY+GI++ LK A+KEYT S ++++ ++D+  A+ +ML K DV++ ML   DYS
Sbjct  681   KPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYS  739

Query  772   GFKTGGHK----ALAGAANHILSLRPPPGQKDAKLDGKKRFADAALALSKAFSLCCTLDE  827
              F+++       +++ + + +++L    G+     D ++RF  +   L+KAF+LC T   
Sbjct  740   KFNSDKKSERYYTISNTMDYVIGL----GE-----DERQRFIKTVTELGKAFALCATEPT  790

Query  828   AKTLRDEVAFMQAVKVILTK----RDISAQKKTDEQREIAIRQIINQAVVSESVVDIFDA  883
             A+ L DE+AF +AVK  L K       +  +KT  + E  I Q+++Q+VV+E V+D++++
Sbjct  791   AQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQT  850

Query  884   VGLEKPNIGLLDDEFLAQVRNLPERNLAVELLERLLEGEIKSKFASNLVQQKKFSEMLSG  943
             +GLE+P++++L D+FL +V  L ++N+AVELL+RLL G++KS   +N    K+FSEML+ 
Sbjct  851   LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN  910

Query  944   VITRYQNRSIETAQVMEELVEMAKKFKEAVSRGEELGLSEDEIRFYDALATNESAVRELT  1003
              I +Y++RSIET++V+EEL+++AK +K+   RG+ELGL+ DEI FYDALA++E+A   + 
Sbjct  911   SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMG  970

Query  1004  DETLKKIAHELTENLRKNITVDWSKresvraslrllvrrilrKYKYPPDMADTAVELVLQ  1063
             D  L+ IAHELT  ++ N+ VDWSKR+S +A +R+ VRR+L+KY YPPD+   AVE V++
Sbjct  971   DKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE  1030

Query  1064  QAEVLGEQ  1071
             QAE+++++
Sbjct  1031  QAELMANN  1038

107) hsdR in NC_020547


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  792 bits (2996),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 470/1048 (45%), Positives = 752/1048 (72%), Gaps = 34/1048 (3%)

Query  2     NETQLENLCLDWFTENGWEVVHGIDIAPESSNPLRKDYKQVLIESDLHAAFERLNPHLPT  61
             NE +LE++ L+W+   G +   G +I+  S  P RK  K+V+++  L+ A+ ++N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    SCFEQVWQKLSKPESLDLVTNNRAFHRMLLEGVPV-TYKKQDDWVHDHAFLVDFNHVHQN  120
               +E+  + L+   S +L+ NN +FH  L++G+ +  Y  +++ + +   ++DF+  ++N
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  121   RFVAINQFTILGTKQPRRPDIICFINGIPFAVLELKSPTDENADIWDAFNQLQTYKEEVS  180
              F+A+NQ+TI+     +RPDI+ FING+P+ V+ELK++T+E  ++ D+++QL+TYK  ++
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DLFIFNEALVVSDGVTARVGSLAANQERFLPWRTIKNE-DDKPALEWELETVVRGFFDRE  239
             +LF FNE LV SDG+ ++ GSL+AN +RF+ WR+   + +  P+L   L+ +++G ++ E
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLA-SLDVLIHGMLNPE  244

Query  240   LFLDYIRFFVLFETDGEKIIKKI-AGYHQFHAVREAVQATIAAANPNGDKKAGVVWHTQG  298
              +LD IR+FVLF+ DG   I KI A+YHQ+ AV  AV+ ++ A++ +GD K+GV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQG  304

Query  299   SGKSISMCCYAGKLLQQPAMHNPTLLIVTDRNDLDGQLFETF-----SNAQDLLKQTPVQ  353
             SGKS++M  ++GKL+Q   ++NPTL++VTDRNDLD QL+ TF      ++++LL+QTP Q
Sbjct  305   SGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  354   ANNRDELRRFLAERESGGIIFTTVQKFALLDDESEHPLLNGRHNIVVMSDEAHRSQYGLK  413
             A+ R EL+ +L+  ESGGI+FTT+QKF   ++E+  + L  R N++VM+DEAHR+QYG++
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFN  421

Query  414   AKLSNDG-TYKFGYAKHMRDALKNAAFIGFTGTPISSEDKDTRAVFGDYVSIYDIQDAVD  472
             AK  + G   K+GYAK +RDAL NA+F+GFTGTP++S DK+T+ VFG+Y+ +YD+ +AV 
Sbjct  422   AKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  473   DGATVPIYYESRLAKLDINQT-EIEDLSdqvdevvedeedvGNREKTKSEWSRLEKLVGA  531
             DG+TV IYYESR+  L++ Q+ ++++      + + ++++ + +++ KS WSR+E L GA
Sbjct  482   DGSTVKIYYESRVIPLNLPQSLDLDE----AYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  532   TPRLKQIAADLVTHFEARTETTAGKGMIVTMSREICVHLYNEIVALRPDWHEPDPEKGKI  591
              PR+  +A D++ HFE+R ++  GKGMIVTMSR I V+LY+EI+ L+P+WH  D +KG I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  592   KIVMTGSASDKPLLQRHIYNKQVKKRLEKRFKDVNDPLQLVIVRDMWLTGFDAPCTHTMY  651
             K+VMTGS+SD   +QRHI  K+ ++ LEKR KDV+D LQLVIVRDMWLTGFD P  HTMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  652   IDKPMKGHNLMQTIARVNRVFKDKQGGLVVDYIGIANELKQALKTYTDAKGKGEPTLRAE  711
             IDKPMKGHNLMQ+IARVNRVFKDK GGL+VDY+GIA+ LK+ALK YT++ ++++ ++ ++
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTD  716

Query  712   EAYAVLAEKMDAIRGMFAKTNEQAGMDLSAYETQAHR----LIIPAANYVLSL-KDGKKR  766
              A  ++  K D I++M+ +      +D S ++++        I  + +YV++L  D ++R
Sbjct  717   KAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQR  770

Query  767   FLDLVLAINKAFSLCSTLDEAKNLHKEIAFYLAIKAVISK----HTSVDRKLSQAEKDST  822
             F+  V  + KAF+LC+T   A++L+ EIAF+ A+KA + K          + + AE ++ 
Sbjct  771   FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAE  830

Query  823   LKQILDNAVIADGVTDVFAMCGLDKPNIGLLSDEFLEDVRQMPYRNLAVELLEKLLNDGI  882
             ++Q++ ++V++++V DV+   GL++P++++LSD+FL DV  +  +N+AVELL++LL++ +
Sbjct  831   INQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQV  890

Query  883   KAKTRNNVVQEKRFSDRLQETLRKYNNRAIETSQVIEELIQMAKEFQAEMQREAALGLNP  942
             K+  + N    KRFS+ L +++ KYN+R+IETS+VIEELIQ+AK+++ E QR   LGLN+
Sbjct  891   KSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNS  950

Query  943   DEIAFYDALANNESAVRELGDDTLKQIAREITEKLRKSTTVDWQVRDSVRAQLKILVRRT  1002
             DEIAFYDALA++E+A   +GD  L+ IA+E+T  ++ +  VDW  RDS +A++++ VRR 
Sbjct  951   DEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRL  1010

Query  1003  LQRWKYPPDKAAEAIELVMKQAETLSNA  1030
             L++  YPPD    A+E V+ QAE ++N 
Sbjct  1011  LKKYGYPPDLQKMAVEQVVEQAELMANN  1038

108) PSTAB_3393 in NC_015740


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  791 bits (2994),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/1029 (48%), Positives = 750/1029 (73%), Gaps = 33/1029 (3%)

Query  2     TEDQLEQETLGWLSEVGYAHLYGPNIAYDGDNPERESYRDVLLTMRLRTAIARLNPQVPL  61
              ED+LEQ +L WL  +GY    G +I+  +  PER S +DV+L  RL  A+ ++N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDALRQILELGVPVQLSANRL-FHRLLVGGVPVQ-YQKDGETRGDFVRLIDWADVRA  119
                E AL++ L L  + +L  N L FH  L+ G+ ++ Y+ +G++  ++V++ID    + 
Sbjct  66    RFIEKALHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  120   NEWLAINQFSIQGPKHTRRPDIILFVNGLPLVLLELKNPADVNADLVKAFDQLQTYKEQI  179
             N+ LA+NQ++I      +RPDI+LF+NGLP+V++ELKN+++   ++  +++QL+TYK +I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   PDVFHYNEILVISDGSEARMGSLSADWERFARWRTIDGVTVDPLGEFNELETLVRGVLQP  239
             P++F +NE+LV SDG +++ GSL+A+ +RF  WR+ DG T  + G +  L+ L++G+L+P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPG-LASLDVLIHGMLNP  243

Query  240   ATLLDYLRYFVLFEDDGR--LVKKIAGYHQFHAVRAAIQQVVSASRPGGTHKGGVVWHTQ  297
              TLLD +RYFVLF+DDG+  + K +A+YHQ+ AV  A+++ + AS   G  KGGV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  298   GSGKSITMTCFAARVMQEAAMENPTIVVITDRNDLDGQLFGVF-----SLSQDLLREQPV  352
             GSGKS+TM  F+++++Q   ++NPT+VV+TDRNDLD QL++ F       +++LLR+ P 
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  353   QVATRGDLREKLANRPSGGIVFATIQKFMPGEDEDSFPVLSARSNIVVVADEAHRTQYGF  412
             Q  TR +L+  L+   SGGIVF+T+QKF P ++E + + L+ R N++V+ADEAHRTQYGF
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  413   SASLKVPDLKVAEASARYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGDYIHV  472
             +A     +      + +Y  GYA+ LRDALPNATFV+FTGTPV+S D++T+ VFG+YI+V
Sbjct  421   NAKYDDKG-----EGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDV  473

Query  473   YDMQQAKEDGATVAIYYESRLAKLSLKDSELAHIddevdelaedeeedQQSRLKSRWAAL  532
             YDM QA  DG+TV IYYESR+  L+L +S   ++D+  ++++ED+EED + RLKS+W+ +
Sbjct  474   YDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRI  531

Query  533   EKVVGAEPRIKSVAADLVAHFEERNQAQSGKAMVVAMSREICVHLYNEIIALRPEWHDED  592
             E + GA PR+ ++A D++ HFE R+QA  GK+M+V+MSR I V+LY+EII L+PEWH +D
Sbjct  532   EALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDD  591

Query  593   PEKGAVKIVMTGSASDKALLRPHIYPGQVKKRLEKRFKDPADPLQLVIVRDMWLTGFDAP  652
              +KG +K+VMTGS+SD + ++ HI P + ++ LEKR KD  D LQLVIVRDMWLTGFD P
Sbjct  592   DDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVP  651

Query  653   CVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKAALKEYTASKGRGR  712
              +HT+Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GIA+ LK ALKEYT S ++++
Sbjct  652   SMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQ  710

Query  713   PTVDAYEAYAVLEEKLDVLRSLLHGFDYSDFLTGGHK----LLAGAANHVLGL-EDGKKR  767
              ++D+  A  ++  K DV++ +L  +DYS F ++        ++ + + V+GL ED ++R
Sbjct  711   TAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQR  770

Query  768   FADNALAMSKAFTLCCTLDEAKAVREEVAFLQAIKV----LLTKREISAKKKTDEERELA  823
             F      ++KAF+LC T   A+ + +E+AF++A+K     LL     +  +KT  E E  
Sbjct  771   FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAE  830

Query  824   IRQIIGNAVVSGDVVDVFAAVGLDKPNIGLLDDEFLAEVRNLPEKNLAVELLERLLEGEI  883
             I Q+++++VV+ DV+DV+ ++GL++P++++L D+FL +V  L +KN+AVELL+RLL G++
Sbjct  831   INQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQV  890

Query  884   KSKFASNLAQEKKFSELLDSVIKRYQNRSIETAQVIEELIEMAKKFAAASKRGDQLGLND  943
             KS   +N +  K+FSE+L++ I++Y++RSIET++VIEELI++AK +    +RG++LGLN 
Sbjct  891   KSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNS  950

Query  944   DELAFYDALANNEASVRELGDEILAKIAHELTDSLRQNVTVDWSNRDSVraklrllvkri  1003
             DE+AFYDALA++E++   +GD  L  IAHELT ++++N+ VDWS+RDS +AK+R+ V+R+
Sbjct  951   DEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRL  1010

Query  1004  lrkykYPPD  1012
             L+KY YPPD
Sbjct  1011  LKKYGYPPD  1019

109) XOO_3254 in NC_007705


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  791 bits (2993),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 488/1073 (46%), Positives = 750/1073 (70%), Gaps = 52/1073 (4%)

Query  1     MAF-LSEAAVEQALLEQLRRLGYAVVSDNTTGPDGSAPERESHDVVIlrrrleeaalllN  59
             M F ++E  +EQ  LE L+ LGY    +N  +  + +PER S+  V+L+ RLE A   +N
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60

Query  60    PQLPPEAREDAIRKLTQNELPNLLEENRRIHALLTEGVDVEYYADDGVLTAGKVWLLDFD  119
             +++ P   E A++ LT +  PNLLE+N  +H  L +G+++E Y D+G      V ++DF+
Sbjct  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120

Query  120   RPENNDWLAVQQFVVISGQARRRPDVVLFVNGLPLAVIELKAPGSAGAHLVGAFNQLQNY  179
              P+NND LAV+Q+ +++G+ ++RPD+VLF+NGLP+ VIELK + +    + ++++QL+ Y
Sbjct  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KQQIPALFHTNAVLVTSDGIASRVGSLSADLERFMPWRTTDGKQVLPNGQPELPTLIEGV  239
             K +IP LF  N VLVTSDGI ++ GSL+A+ +RFM WR+ DG+   + G + L  LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240

Query  240   FAPQRFLELLRWFTAFGETGGG-LVKIIAGYHQFHAVNHAVESTIRASRSAVAEDPAKYG  298
             + P+ +L+L+R F  F + G G + KI+A+YHQ+ AVN AV+ ++               
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRAL---------------  285

Query  299   SASVKAQPAGDRRAGVIWHTQGSGKSLLMAFYAGRLVQHPAMRNPTLVVLTDRNDLDDQL  358
                + +   GD ++GVIWHTQGSGKSL M F++G+L+Q   + NPTLVV+TDRNDLD+QL
Sbjct  286   ---LASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQL  340

Query  359   FGTFSMCKA-----LLRQTPVQADSREDLARLLDRASGGVIFTTLQKFGEVD-----APL  408
             ++TF   K+     LLRQTP QA++R +L  LL   SGG++FTT+QKF   +     A+L
Sbjct  341   YSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAAL  400

Query  409   TARRNVVVIADEAHRSQYGLKAKLDAKTGMVSYGFAKYMRDALPNASFIGFTGTPIEATD  468
             T R+NV+V+ADEAHR+QYG++AK D K   + YG+AKY+RDALPNA+F+GFTGTP+ +TD
Sbjct  401   TERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTD  460

Query  469   VNTPALFGHYIDVYDISRAVEDGATVPIYYESRLARIELDEDEKPHLDAEVEALFEWEGT  528
              NT  +FG+YIDVYD+++AV DG+TV IYYESR+  ++L +    +LD   + + E +  
Sbjct  461   KNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEE  518

Query  529   DEKEKLKGRAAAVERLVGSQKRLALVAQDLVTHFEERVAALDGKAMAVCMSREICVDLYN  588
             D K++LK++ + +E L G++ R+  +A+D++ HFE R  A+ GK+M V MSR I VDLY+
Sbjct  519   DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYD  578

Query  589   EIVKLRPHWHSDDDTLGAVKIVMTGAASDPPQWQQHIGNkarrdalarrakdpadpLKLV  648
             EI++L+P+WHSDDD  G +K+VMTG++SDP   Q+HIG K RR+ L +R KD  D L+LV
Sbjct  579   EIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLV  638

Query  649   IVRDMWLTGFDAPSMHTMYVDKPMKGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKS  708
             IVRDMWLTGFD PSMHTMY+DKPMKGH LMQAIARVNRVF+DKP+GLIVDY+GIA++LK 
Sbjct  639   IVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKE  698

Query  709   ALAQYSPQDKQNTGIDEAQAIAVMREKYEVVRDMYHGFDYLTALNGTPQQRLTMMAGAIE  768
             AL +Y+  D+ +T+ID  +A+ +M  KY+V++DM   +DY    ++   +R   ++ +++
Sbjct  699   ALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMD  758

Query  769   WILDQQQQWVaaassddgkkaaQRRYQDavlalstayalasasDEALAVREEVGFFQAIR  828
              +++  ++              ++R+  +V  L+ A+AL ++   A  + +E++FF+A++
Sbjct  759   YVIGLGED-------------ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVK  805

Query  829   EALVK-----SATGSGINSQERDFAIRQIVSRAVVSTEIVDILKAAGIQSPDISILSDEF  883
              +LVK         +   + E +  I Q+VS++VV+ +++D+ ++ G++ PD+SILSD+F
Sbjct  806   AGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDF  865

Query  884   LAEVQRMDKKNLALEALRKLINDGIRSRSKRNIVETKAFSERLEDAIARYHANAITTAEV  943
             L +V+ + +KN+A+E L +L+++ ++S  K N   +K FSE L ++I +Y++ +I T+ V
Sbjct  866   LKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKV  925

Query  944   LQELICIAKDIRAARARGEEQGLSEDEVAFYDALAENDSAVQLMGDDALKVIAHELLVSL  1003
             ++ELI +AKDI+  + RG+E GL+ DE+AFYDALA +++A + MGD  L+ IAHEL  ++
Sbjct  926   IEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTV  985

Query  1004  KGSASVDWARRDSARARMRVLVKRILRKYGYPPDLQDAAVRTVLQQAEALSAG  1056
             K + +VDW++RDSA+A+MRV V+R+L+KYGYPPDLQ  AV  V++QAE ++  
Sbjct  986   KENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

110) EJP617_05160 in NC_017445


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  791 bits (2993),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 467/1056 (45%), Positives = 763/1056 (73%), Gaps = 38/1056 (3%)

Query  2     LSEDDLEQLSLGWFAGQGWEVLYGPDIAPDGANPLRASFQDVFLRPVLRQQLTQINPHLP  61
             ++EDDLEQ++L W+ + G +   G +I+  +  P R S +DV L+  L + L +IN+++ 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    DSVLDEVVSRVTRPESPDIVASNKAFHHLLLTGVPVA-YKRDDRTMHDTALLMDFNRPDN  120
                ++  +  +T   SP+++ +N +FH+ L+ G+ +  Y  +++++ +   ++DF+ P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  121   NRFSVVNQVAIKGTKQVRRPDVIAYINGLPVAVIELKSPVDASADIWAAFNQLQTYKNEV  180
             N F  VNQ++I      +RPD++ +INGLP+ VIELK++ + + ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEVLVISDGYNARIGSLTADEERYLPWKTVSSEDDKPVRECQLETLINGFFNRE  240
             ++LF  NEVLV SDG N++ GSLTA+ +R++ W++  ++ + +     L+ LI+G +N E
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  241   LLLDYLRYFILFEHDGQRTMKKI-AACHQFHAVREAVSATIVAATGQFLPLRSDIKPGSK  299
              LLD +RYF+LF++DG+  + KI AA HQ+ AV  AV  +++A++ Q          G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQ----------GDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCqaqdllk  359
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+VVVTDRNDLD QLY+TF ++++   
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSG  352

Query  360   -----qqpqqaSDREQLRAMLAARGSGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISD  414
                  Q P+QA  R +L+++L+   SGGI+FTT+QKF P + E + +AL  R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLNATLDRQSGAYKFGYAKHMRDALPNAAFMGFTGTPVSAEDKDTRAVFGDYV  474
             EAHR+QYG+NA  D ++ + K+GYAK +RDALPNA+F+GFTGTPV++ DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNHDELEALSSQVEELVEDEESGQKEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L    +++ ED+E + K++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSRPRIEQVAADLVRHFEARNATMDGKAMIVAMSRDICVRLYDALVDLRPQWHS  594
             R+E L G++PR+E +A D+++HFE+R+ +M GK+MIV+MSR I V LYD ++ L+P+WHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EDVEQGAIKIIMTGSASDKASLQPHIYNKPTKKRLEARFKDLNDPLKIVIVRDMWLTGFD  654
             +D ++G IK++MTGS+SD +S+Q HI  K  ++ LE R KD++D L++VIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTIDAREALAILLEKLDIIHGMFAKTPTDAGFDYSAFADN--PQR--VLLDAANYILG  770
             +QT+ID+  A+ ++L K D+I++M+ +      +DYS F  +  ++R   + ++ +Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYYTISNTMDYVIG  762

Query  771   L-EDGKKRYFDVVLALNKALSLCSTLDEVKPLQKELAFLSAVKVAMIKL----TTTDQKF  825
             L ED ++R++  V  L KA++LC+T    + L+ E+AF+ AVK +++KL         + 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  826   SQSEKHSLLSRILDNAIVASGVDDVFALAGLDKPNIGLLSDEFLQEVQDMPQRNLAVELL  885
             + +E ++ +++++ +++V+ +V DV+   GL++P++++LSD+FL++V+++ Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  886   QKLLNDGIHARTNNNVVQEKKYSDRLKAVLLRYHNRAIETAQVIEELIQMAKDFQAAMAR  945
             ++LL++ + +  + N    K++S+ L   + +Y++R+IET++VIEELIQ+AKD++    R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  946   DDALGLNPDEIAFYDALAENESAVRELGDEILKKLAVEVTLKLRQSTTVDWQKRESVRAR  1005
             ++ LGLN+DEIAFYDALA +E+A   +GD  L+ +A E+T  ++++  VDW KR+S +A+
Sbjct  943   GNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAK  1002

Query  1006  LRILVRQTLRKYKYPPDKTPYAVELILKQAEVMSNS  1041
             +R+ VR+ L+KY YPPD    AVE ++ QAE+M+N+
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

111) Ser39006_0954 in NC_022268


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  791 bits (2994),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 474/1057 (45%), Positives = 760/1057 (72%), Gaps = 40/1057 (3%)

Query  2     LSEDDLEQMSLGWFAGQGWEILHGPDIAPDSDNPLRISFHDVFLRPVLREQLAKLNPHLP  61
             ++EDDLEQ++L W+ + G +   G +I+  S  P R S  DV L+  L   L K+N+++ 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    ASVLDEVLARITRAESPDIVVSNKAFHHLLLAGVPVE-YKRDDKVIHDTALLMDFNHPGN  120
             +  ++  L  +T   SP+++ +N +FH+ L+ G+ +E Y  +++ I +   ++DF+ P N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  121   NHFTVVNQVAISGTKQLRRPDVICYINGLPVAVIELKSPIDANADIWTAFNQLQTYKNEI  180
             N+F  VNQ++I      +RPD++ +INGLP+ VIELK++ +   ++  +++QL+TYK  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEALVISDGYNARIGSLTADEERYLPWKTISNE-DDKPLLEWQLETVVKGFFNR  239
             ++LF  NE LV SDG N++ GSLTA+ +R++ W++   + +  P L   L+ ++ G +N 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLA-SLDVLIHGMLNP  243

Query  240   ELLLDYIRYFILFENDGK-HLIKKIAAYHQFHAVREAVSATIVASTGKFLPLRCDIKPGS  298
             E LLD IRYF+LF++DGK H+ K +AAYHQ+ AV  AV  +++AS+            G 
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSE----------QGD  293

Query  299   KKAGVVWHTQGSGKSISMCCYAGKLLQQEEMNNPTIVVVTDRNDLDGQLYATFCQ-----  353
              K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+VVVTDRNDLD QLY+TF +     
Sbjct  294   GKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRS  351

Query  354   AKDLLKQEPQQASDRDQLREMLAARESGGIIFTTVQKFAPLDGEKVHPALSVRDNIVVIS  413
             +K+LL+Q P+QA  R +L+ +L+  ESGGI+FTT+QKF P + E   +AL+ R N++V++
Sbjct  352   GKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMA  410

Query  414   DEAHRSQYGLSATLDRETGVYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDY  473
             DEAHR+QYG++A  D      KYGYAK +RDALPNA+F+GFTGTPV+S DK+T+ VFG+Y
Sbjct  411   DEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNY  470

Query  474   VSIYDIQDAVEDGATVQIFYESRLAKLDLNHAELEELSNQVDELVedeetdqkektkGDW  533
             + +YD+ +AV DG+TV+I+YESR+  L+L ++   +L +  +++ ED+E D K++ K+ W
Sbjct  471   IDVYDMTQAVADGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKW  528

Query  534   SRLEKLVGSEPRIHQVAADLVKHFEARNATMDGKAMVVAMSRDICVRLYNALVALRPEWH  593
             SR+E L G+ PR++ +A D+++HFE+R+ +M GK+M+V+MSR I V LY+ ++ L+PEWH
Sbjct  529   SRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWH  588

Query  594   SEDVEKGSLKVIMTGSASDKEHLQSHIYNKQTKKRLETRFKDLDDPLKIVIVRDMWLTGF  653
             S+D +KG +KV+MTGS+SD   +Q HI  K+ ++ LE R KD+DD L++VIVRDMWLTGF
Sbjct  589   SDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGF  648

Query  654   DAPCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPSGLVVDYIGIANELKDALKTYTDSKG  713
             D P  HTMYIDKPM+GHNLMQAIARVNRVFKDKP+GL+VDY+GIA+ LK+ALK YT+S +
Sbjct  649   DVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-D  707

Query  714   KGQTTVDTKEAFSVLLEKLDIIHGMFAKTATDPGFDYSAF--EHNPQR--VLLDAANYIL  769
             ++QT++DT  A  ++L K D+I++M+ +      +DYS F  + +++R   + ++ +Y++
Sbjct  708   QAQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYYTISNTMDYVI  761

Query  770   GL-DDGKKRYFDVVLALNKSWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDK----K  824
             GL +D ++R++  V  L K+ +LC+T   A+ L+ E+AF+ AVK +++KL    K    +
Sbjct  762   GLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTR  821

Query  825   FSQSEKNSLLSRILDNAIIATGVDDVFALAGLDKPNIGLLSDEFLQEVHDMPQRNLAVEL  884
              + +E ++ +++++ +++++ +V DV+   GL++P++++LSD+FL++V+++ Q+N+AVEL
Sbjct  822   KTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVEL  881

Query  885   LQKLLNDGIHARANNNVVQEKKYSDRLRTVLLKYNNRAIETAQVIEELIQMAKEFQAAMA  944
             L++LL++ + +  + N    K++S+ L   + KYN+R+IET++VIEELIQ+AK+++    
Sbjct  882   LNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQ  941

Query  945   RDDALGLNPDEIAFYDALAENESAVRELGDDILKKLAIEVTLKLRQSTTVDWQVRESVRA  1004
             R++ LGLN+DEIAFYDALA +E+A   +GD  L+ +A E+T  ++++  VDW  R+S +A
Sbjct  942   RGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKA  1001

Query  1005  RLRILVRQTLRKYKYPPDKTAGAVELILKQAEVVSNS  1041
             ++R+ VR+ L+KY YPPD    AVE ++ QAE+++N+
Sbjct  1002  KMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

112) AFE_2790 in NC_011761


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  790 bits (2992),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 461/1040 (45%), Positives = 737/1040 (71%), Gaps = 34/1040 (3%)

Query  3     PLNESTIEHHAIALFKELGYAYAFGPDIGPDSNQKERADYENPLLLERLRTAIHRLNPEA  62
              +NE  +E+ A+  ++ LGY Y  G +I+  S   ER    + +L ERL  A++++N++ 
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    PKEIRDEALRHVQAIAVGGLMTENSLFQQMLVEGVRVAHMVD-GEERGSIVRLIDYDHPE  121
                + + AL+++       L+ +N  F++ L++G+ + +  D G+    IV++ID++ P+
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  122   KNDLLVVNQYTVIHNRINRRADLVVFVNGLPLGLFELKNMADANATTRRAWNQLQTYQAD  181
             +ND+L VNQ T+++   ++R+D+V+F+NGLP+ ++ELKN ++       + +QL+TY+  
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  182   IPNLMAYNAILVISDGLKAAVGCLGAPYERFLPWKTIDGQELMDRGDDPLRFLIHGVFEP  241
             IP+L ++N +LV SDG+++  G L A Y+RF+ W++ DGQ     G  +L  LIHG+++P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  242   VRFLDLIRYFIAISDDGR-KLSKKIAAYHQFHAAQKALLTTLASAGIGGDRRGGVVWHTQ  300
               +LDLIRYF+ + DDG+  +SK +AAYHQ+ A +KA+  +L +++  GD +GGV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  301   GSGKSLTMLFFAGMLIQHPALENPTILMLTDRTNLDTQLFDTFA-----AGKQLLRQDPQ  355
             GSGKSLTM+FF+G LIQ   L+NPT++++TDR +LD QL+ TF      +GK LLRQ P+
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  356   QADSVSDLRELLQRASGGVLFSTIQKFQKDRDEPLGKHPVLSERKNIIVMVDEAQRSQYE  415
             QA++  +L+ LL   SGG++F+T+QKF+ +++E     + L+ERKN+IVM DEA+R+QY 
Sbjct  362   QAETRKELKSLLSVESGGIVFTTMQKFEPEQNET--TMAALTERKNVIVMADEAHRTQYG  419

Query  416   I----------LK-GYAANLRAALPNATFVAFTGTPLELDDRDTRVVFGDYIDIYDIQRA  464
             +          +K GYA  LR ALPNATFV+FTGTP+   D++T++VFG+YID+YD+ +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  465   VEDGATVPIYYESRLVRLNLPEDQRPLIDSTFEEITEDDEQENKERLKTRWAQLEALVGA  524
             V DG+TV IYYESR++ LNLP+     +D ++++ITED+E++ K+RLK++W+++EAL GA
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  525   PKRVEQIAADLLDHWEKRKSILSGKAMIVAMSRRIAVELYDAIVRIHPDWRGDDDTQGRI  584
               RVE +A D+++H E R+  + GK+MIV+MSRRIAV+LYD I+R+ P+W++DDD +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  585   KVVMTGSASDPIEWKPHIRSKAGNEAIADRLKDPDDPLEIVIVRDMWLTGFDAPALNTLY  644
             KVVMTGS+SDP   + HI +K   + +  R+KD DD L++VIVRDMWLTGFD P+++T+Y
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   VDKPMRGHTLMQAIARVNRVFTNKSGGLVVDYIGIAQDLKNAIATYTRSGGKGNPAETVQ  704
             +DKPM+GH LMQAIARVNRVF +K+GGL+VDY+GIA+ LK+A+  YT  +++++ A   +
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT-ESDQAQTAIDTD  716

Query  705   TAIKVLLEKLDICRGIFHGCDYQDYLTDDGSEKVATLRKATEFILSQELTEEGVKRRFRN  764
              A+ ++L K D+ ++++   DY  + +D  SE+  T+ ++ +++++  L E+  ++RF +
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIG--LGEDE-RQRFIK  773

Query  765   ATSGLKKAATLAAGDDIVERCRTEIIFFLSVRATL------DKSSEAESLVEEQEYAIRQ  818
             + + L KA +L A +   +    EI FF +V+A L       K + +     E E  I Q
Sbjct  774   TVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  819   LIDQSIAPEGVVDLYAVAGLPKSEISLLSDEFIHQIEAMPEKNLALEMLRRLLQDKVRKE  878
             L+ QS+  E+V+D+Y   GL ++++S+LSD+F+ ++E++ +KN+A+E+L RLL+++V+  
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  879   GKGNLIQSKAFSEKLEEALRKYHNRSVDTVEVMQELIELAKALQALDQRHAELGLSKDEA  938
              K N   SK FSE L +++ KY++RS++T  V++ELI+LAK ++  +QR  ELGL+ DE 
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEI  953

Query  939   AFYDALATNDSAVQAMGDEALKMIAKEVADTVRQNTRIDWSIREQARAHLRRMVKRVLRK  998
             AFYDALA++++A +AMGD  L+ IA E++ TV++N  +DWS R+ A+A +R  V+R+L+K
Sbjct  954   AFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKK  1013

Query  999   HGYPPDMQEGAVNLVIEQAE  1018
              GYPPD+Q  AV+ V+EQAE
Sbjct  1014  YGYPPDLQKMAVEQVVEQAE  1033

113) Lferr_2413 in NC_011206


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  790 bits (2992),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 461/1040 (45%), Positives = 737/1040 (71%), Gaps = 34/1040 (3%)

Query  3     PLNESTIEHHAIALFKELGYAYAFGPDIGPDSNQKERADYENPLLLERLRTAIHRLNPEA  62
              +NE  +E+ A+  ++ LGY Y  G +I+  S   ER    + +L ERL  A++++N++ 
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    PKEIRDEALRHVQAIAVGGLMTENSLFQQMLVEGVRVAHMVD-GEERGSIVRLIDYDHPE  121
                + + AL+++       L+ +N  F++ L++G+ + +  D G+    IV++ID++ P+
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  122   KNDLLVVNQYTVIHNRINRRADLVVFVNGLPLGLFELKNMADANATTRRAWNQLQTYQAD  181
             +ND+L VNQ T+++   ++R+D+V+F+NGLP+ ++ELKN ++       + +QL+TY+  
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  182   IPNLMAYNAILVISDGLKAAVGCLGAPYERFLPWKTIDGQELMDRGDDPLRFLIHGVFEP  241
             IP+L ++N +LV SDG+++  G L A Y+RF+ W++ DGQ     G  +L  LIHG+++P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  242   VRFLDLIRYFIAISDDGR-KLSKKIAAYHQFHAAQKALLTTLASAGIGGDRRGGVVWHTQ  300
               +LDLIRYF+ + DDG+  +SK +AAYHQ+ A +KA+  +L +++  GD +GGV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  301   GSGKSLTMLFFAGMLIQHPALENPTILMLTDRTNLDTQLFDTFA-----AGKQLLRQDPQ  355
             GSGKSLTM+FF+G LIQ   L+NPT++++TDR +LD QL+ TF      +GK LLRQ P+
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  356   QADSVSDLRELLQRASGGVLFSTIQKFQKDRDEPLGKHPVLSERKNIIVMVDEAQRSQYE  415
             QA++  +L+ LL   SGG++F+T+QKF+ +++E     + L+ERKN+IVM DEA+R+QY 
Sbjct  362   QAETRKELKSLLSVESGGIVFTTMQKFEPEQNET--TMAALTERKNVIVMADEAHRTQYG  419

Query  416   I----------LK-GYAANLRAALPNATFVAFTGTPLELDDRDTRVVFGDYIDIYDIQRA  464
             +          +K GYA  LR ALPNATFV+FTGTP+   D++T++VFG+YID+YD+ +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  465   VEDGATVPIYYESRLVRLNLPEDQRPLIDSTFEEITEDDEQENKERLKTRWAQLEALVGA  524
             V DG+TV IYYESR++ LNLP+     +D ++++ITED+E++ K+RLK++W+++EAL GA
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  525   PKRVEQIAADLLDHWEKRKSILSGKAMIVAMSRRIAVELYDAIVRIHPDWRGDDDTQGRI  584
               RVE +A D+++H E R+  + GK+MIV+MSRRIAV+LYD I+R+ P+W++DDD +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  585   KVVMTGSASDPIEWKPHIRSKAGNEAIADRLKDPDDPLEIVIVRDMWLTGFDAPALNTLY  644
             KVVMTGS+SDP   + HI +K   + +  R+KD DD L++VIVRDMWLTGFD P+++T+Y
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   VDKPMRGHTLMQAIARVNRVFTNKSGGLVVDYIGIAQDLKNAIATYTRSGGKGNPAETVQ  704
             +DKPM+GH LMQAIARVNRVF +K+GGL+VDY+GIA+ LK+A+  YT  +++++ A   +
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT-ESDQAQTAIDTD  716

Query  705   TAIKVLLEKLDICRGIFHGCDYQDYLTDDGSEKVATLRKATEFILSQELTEEGVKRRFRN  764
              A+ ++L K D+ ++++   DY  + +D  SE+  T+ ++ +++++  L E+  ++RF +
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIG--LGEDE-RQRFIK  773

Query  765   ATSGLKKAATLAAGDDIVERCRTEIIFFLSVRATL------DKSSEAESLVEEQEYAIRQ  818
             + + L KA +L A +   +    EI FF +V+A L       K + +     E E  I Q
Sbjct  774   TVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  819   LIDQSIAPEGVVDLYAVAGLPKSEISLLSDEFIHQIEAMPEKNLALEMLRRLLQDKVRKE  878
             L+ QS+  E+V+D+Y   GL ++++S+LSD+F+ ++E++ +KN+A+E+L RLL+++V+  
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  879   GKGNLIQSKAFSEKLEEALRKYHNRSVDTVEVMQELIELAKALQALDQRHAELGLSKDEA  938
              K N   SK FSE L +++ KY++RS++T  V++ELI+LAK ++  +QR  ELGL+ DE 
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEI  953

Query  939   AFYDALATNDSAVQAMGDEALKMIAKEVADTVRQNTRIDWSIREQARAHLRRMVKRVLRK  998
             AFYDALA++++A +AMGD  L+ IA E++ TV++N  +DWS R+ A+A +R  V+R+L+K
Sbjct  954   AFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKK  1013

Query  999   HGYPPDMQEGAVNLVIEQAE  1018
              GYPPD+Q  AV+ V+EQAE
Sbjct  1014  YGYPPDLQKMAVEQVVEQAE  1033

114) Arth_0986 in NC_008541


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  784 bits (2966),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 466/1041 (45%), Positives = 740/1041 (72%), Gaps = 15/1041 (1%)

Query  3     DLNESTVELAVLQYLRELGYTTAFGPDIAPEAAAAERSSYEQVYLLSRLRAAAVQINRGL  62
             ++NE  +E   L+ L+ LGY    G +I+  + ++ER S  +V L  RL  A  +IN ++
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    DAALIDEAIKRLGRAESQNPVAENLRVHELLTEGVPVEHRDAEGSVRTTRVRLIDFEDPA  122
             ++ +I+ A+  L    S N + +NL  HE L +G+ +E+ D EG      V++IDFE P 
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  123   GNDWLAVNQFTIIENGKNRRPDVVLFLNGMPLGLLELKNLADEHATLKGAWNQIQTYRHD  182
              ND LAVNQ+TI++ + ++RPD+VLF+NG+P+ ++ELKN ++E   + ++ +Q++TY+  
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  183   IPSLFTPNAVTVVSDGVSAAMSSFTGGFEHYAPWKTIDGR-EVVMNLPAVEVLIKGVFDQ  241
             IP LFT N V V SDG+++  +S+T+ ++++  W++ DG+ E    L++++VLI G+++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  242   KRFLDILQNFIVFSDESKGLVKRV-AKYHQYWAVNAAVESTIEAAGPDGDRRGGVVWHTQ  300
               +LD+++ F++F D++KG + ++ A YHQY AVN AV+ ++ A++ +GD +GGV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  301   GSGKSIEMLLYAAKIMRDIRMGNPTLLFITDRNDLDDQLFGEVFAPA------EILPEKP  354
             GSGKS+ M+++++K+++   + NPTL+ +TDRNDLD+QL++  F  +       +L + P
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYS-TFVKSKGRSGKGLLRQTP  360

Query  355   VQadsradlrsllrrasGGIIFTTVQKFAPEAGGDTNPVLTDRRNVVVVADEAHRSQYGF  414
              QA++R +L+SLL   SGGI+FTT+QKF PE    T + LT+R+NV+V+ADEAHR+QYGF
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  415   TESLDERTGQLKSGLAKHMRDALPNATYLGFTGTPIESNDKSTRSVFGDYIDIYDLTRAV  474
                 D++   +K G AK +RDALPNAT++GFTGTP+ S DK+T+ VFG+YID+YD+T+AV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  475   EDGATVRIFYESRLAKVSLDADVHAAIdeladeitetaeedeatRAKSRWARLEAVVGAN  534
              DG+TV+I+YESR+  ++L   ++  +DE  ++ITE  EED   R KS+W+R+EA+ GA+
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  535   DRLDVIAGDIVDHWEKRRTEMFGKAMIVTMSRRIAVDLYDKIVKLKPEWHTDDPTTGMIK  594
              R++ +A DI++H E R+  M GK+MIVTMSRRIAVDLYD I++LKPEWH+DD   G+IK
Sbjct  539   PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  595   VVMTGSAADPQAFQPHIYDKKTRKDLKLRAKDPNDSLEIVIVRDMWLTGFDAPSMHTMYV  654
             VVMTGS++DP +FQ HI  KK R+ L  R KD +D L++VIVRDMWLTGFD PSMHTMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  655   DKPMQGAGLMQAIARVNRTFRDKPGGLIVDYIGVATNLRRALAEYSPSDRDQAGVPIEEI  714
             DKPM+G  LMQAIARVNR F+DKPGGLIVDY+G+A +L+ AL EY+ SD+ Q+++  +  
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKA  718

Query  715   VSAMLEKHDIVRGLLHGCRYNSSPllapaarlaqhalVLDFVMA-DPDRTARYLDQVLAL  773
             V  ML K D+++++L    Y+       + R    +  +D+V++ + D   R++  V  L
Sbjct  719   VELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTEL  778

Query  774   AKAFALCGARDEAAAIRNDVRMFADVRAATLK-IQNPDSGRAGSGAVEIDTAIGQLVNEA  832
             +KAFALC++   A  + +++  F  V+A+ +K +Q P  G++   + E+++ I QLV+++
Sbjct  779   GKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQS  838

Query  833   VTADEVVDIYKLAGIETPELSILSDEFLDTLAGKEKPNLQMGLLRRLINDQIRTVQRTNI  892
             V +++V+D+Y+  G+E P+LSILSD+FL  + G  + N+ + LL RL+++Q++++ +TN 
Sbjct  839   VVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNA  898

Query  893   VQARKFSEQLDEAINRYTNRTLTTAEIIAELVKLAKDMRNQNDRHNRLGLSVAEAAFYDA  952
               +++FSE L+++IN+Y +R++ T+ +I EL++LAKD++++++R N LGL+  E AFYDA
Sbjct  899   TVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDA  958

Query  953   IVQNDVAVLQMGDDTLKKIAVNLVSTVQRSATIDWSLKHSVRAAMRSKIRRLLARYDYPP  1012
             +  ++ A   MGD  L+ IA +L  TV+ +  +DWS ++S +A MR  +RRLL +Y+YPP
Sbjct  959   LASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPP  1018

Query  1013  DHEEKAIELILRQAELIAGTE  1033
             D +  A+E ++ QAEL+A  +
Sbjct  1019  DLQKMAVEQVVEQAELMANNQ  1039

115) APECO78_16850 in NC_020163


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  782 bits (2958),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/1080 (47%), Positives = 784/1080 (73%), Gaps = 55/1080 (5%)

Query  5     TESDIEVMAIEHLQGLGYEYVYGPDIEPSGINPLRSYQ-QVILEDKVRTALQRINPHLSE  63
              E D+E +A+E LQ+LGY+Y  G +I  +++ P R  + +V+L++++  AL++IN+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  64    QKCEEALKQVMQISSPDLMANNLTFHRLLTEGINIEV-SKDGNTQGELASLIDFNDPTNN  122
             +  E AL ++    SP+L+ NNLTFH  L +GI+IE    +G++  E+  +IDF+ P NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  123   AFLVINQLTIKEGNHTRRPDLILFINGLPLVVIELKNAADENATVTGAYNQIKTYQNQIP  182
              FL +NQLTI +G+  +RPD++LFINGLP+VVIELKN+++E   V ++Y+Q+ TY+ +IP
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  183   GLFNYNAFNVISDGLEAKAGTVSADFSRYMTWKTANGKTQATSTQPQLEVLLQGLLNPVT  242
              LF +N   V SDG+++KAG+++A++ R+MTW++ +G+T++++  + L+VL++G+LNP T
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPET  245

Query  243   LLDIIRHFIVFEASKHEDSKGIISIRTVKKMAAYHQYYAVNAAVLSTIRASAVNADSPSA  302
             LLD+IR F++F    ++D+KG IS    K +AAYHQYYAVN AV                
Sbjct  246   LLDLIRYFVLF----QDDGKGHIS----KILAAYHQYYAVNKAV----------------  281

Query  303   EVALRQQGRNSKDLVNAQKTGDRKAGVVWHTQGSGKSLSMVFYTGKIVLALDNPTVVVIT  362
                        + L+ +   GD K+GV+WHTQGSGKSL+MVF++GK++  L+NPT+VV+T
Sbjct  282   ----------DRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVT  331

Query  363   DRNDLDDQLFGTF-----SSATQLLRQTPKQANNREELKEYLRVASGGVVFTTIQKFQPD  417
             DRNDLD+QL++TF      S+  LLRQTPKQA+ R ELK  L V SGG+VFTT+QKF+P+
Sbjct  332   DRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPE  391

Query  418   DGSNIYELLSDRTNIVVIADEAHRSQYGFSAKEVDVKDSEGNVTGKRTVYGFAKYMRDAL  477
             +       L++R N++V+ADEAHR+QYGF+AK       +++  G +  YG+AKY+RDAL
Sbjct  392   QNETTMAALTERKNVIVMADEAHRTQYGFNAK------YDDKGEGIK--YGYAKYLRDAL  443

Query  478   PNATYLGFTGTPIEKTDVNTPAVFGNYVDIYDISQAVEDGATVRIFYESRLAKIAISDEG  537
             PNAT++GFTGTP+  TD NT  VFGNY+D+YD++QAV DG+TV+I+YESR+  + ++ ++
Sbjct  444   PNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP-QS  502

Query  538   RQLIedfddefnedeLTLTQKERSKWARIEGLIGSSKRIKAIAADMVLHFEQRLKSNADH  597
              +L E ++D  +++E  + Q+ +SKW+RIE+L G+  R+ A+A D++ HFE R   +A  
Sbjct  503   LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETR--QQAMK  560

Query  598   GKGMIVTMSRRIAAELYKEIIALKPEWHSDDLNDGIIKVVMTSSAADGPEIAKHHTTKKE  657
             GKGMIVTMSRRIA +LY EII LKPEWHSDD + G+IKVVMT+S++D   + +H   KK 
Sbjct  561   GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKR  620

Query  658   RQVLANRMkddddklklVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAIARVNRVYKD  717
             R++L +RMKD DD L+LVIVRDMWLTGFD PSMHT+YIDKPMKGHNLMQAIARVNRV+KD
Sbjct  621   RNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKD  680

Query  718   KIGGLVVDYLGIASDLKEALSFYSDAGGRGDPAEVQEEAVTLMQEKLEILEGMMHGYDYK  777
             K GGL+VDY+GIA  LKEAL  Y+++ ++++ A   + AV LM  K +++++M+   DY 
Sbjct  681   KPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYS  739

Query  778   AYFAATTSQRLTIILESENHILGLDNGKGKMRFlaavaalsqafalaTPHDKAMEAAPEV  837
              + +   S+R   I ++ + ++GL+++  + RF+ +V+ L++AFAL + +  A E   E+
Sbjct  740   KFNSDKKSERYYTISNTMDYVIGLGED-ERQRFIKTVTELGKAFALCATEPTAQELNDEI  798

Query  838   AFFQAVKARLNKFTENS-DGSEEEHNDSLEVRVKQTIDQALVTDKVVDIFDAAGIQKPDI  896
             AFF+AVKA L K+ + + +G        +E  ++Q + Q++VT+ V+D++++ G+++PD+
Sbjct  799   AFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDL  858

Query  897   SVLSEEFLQEMKDYQHRNIALETLKKLLSDEIKVRSNQSITQGKKLIDMLTSAINGYQNK  956
             S+LS++FL+++ + +++N+A+E L++LL +++K   + + T +K++ +ML ++IN Y+++
Sbjct  859   SILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSR  918

Query  957   VLTAAEVIDELIKLAKTIQESDSLASQLNLSAYEYAFYSAVADNDSArelmekeklrelA  1016
              + ++ VI+ELI+LAK I++ +  +++L L++ E AFY A+A +++A+E M    LR +A
Sbjct  919   SIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIA  978

Query  1017  VVLTEAIRNNVSLDWTvkeaarakirvvvkrllkkYGYPPDMSLLATETVLKQAELLAGE  1076
               LT ++++N+++DW+ +++A+AK+RV V+RLLKKYGYPPD+  +A E V+ QAEL+A +
Sbjct  979   HELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

116) PSPTO_1089 in NC_004578


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  780 bits (2953),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 495/1059 (47%), Positives = 754/1059 (72%), Gaps = 48/1059 (4%)

Query  2     TEDQLEQETLGWLAETGYSHVYGPTIAYDGESPERDNYRQVLLVERLRSAIVRLNPKVPL  61
              ED+LEQ +L WL   GY    G  I+  + +PER + ++V+L ERL  A+ ++N+ +  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDALKQVQELGL---PVQLSANRLFHRLLVSGVPVQ-YQKDGETRGDFVRLIDWVEV  117
                E AL   +EL L   P  L  N  FH  L++G+ ++ Y+ +G++  ++V++ID    
Sbjct  66    RFIEKAL---HELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYP  122

Query  118   KANDWLAINQFSIQGPKHTRRPDIILFVNGLPLVLLELKNPADVKADLGKAFDQIQTYKE  177
             + ND LA+NQ++I      +RPDI+LF+NGLP+V++ELKN+++   ++  +++Q++TYK 
Sbjct  123   QNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  178   QIPDLFQYNEILVISDGSEARMGSLSADVERFMNWRTIDGKDLDPLGQFNELETLVRGAL  237
             +IP+LF +NE+LV SDG +++ GSL+A+ +RFM WR+ DG+  ++   +  L+ L++G L
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQT-ESSPGLASLDVLIHGML  241

Query  238   APPMLLDYLRYFVLFEDDGR--LVKKIAGYHQFHAVRAAIGQVVSASRPGGTHKGGVVWH  295
              P  LLD +RYFVLF+DDG+  + K +A+YHQ+ AV  A+++ + AS   G  KGGV+WH
Sbjct  242   NPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWH  301

Query  296   TQGSGKSITMTCFAARVMQDAAMENPTIVVITDRNDLDGQLFGVF-----SLSHDLLREQ  350
             TQGSGKS+TM  F+++++Q   ++NPT+VV+TDRNDLD QL++ F       + +LLR+ 
Sbjct  302   TQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQT  359

Query  351   PFQVESRGDLRSKLTNRPSGGIVFATIQKFMPGADEDIFPILSDRSNIVVIADEAHRTQY  410
             P Q E+R +L+S L+   SGGIVF+T+QKF P  +E   + L++R N++V+ADEAHRTQY
Sbjct  360   PKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQY  418

Query  411   GFGAELKVSEATADTASQTRYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRSVFGEY  470
             GF A         D +   +Y  GYA+ LRDALPNATFV+FTGTPV+S D++T+ VFG+Y
Sbjct  419   GFNAKY------DDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNY  470

Query  471   IHIYDMQQATEDGATVAIYYESRLAKLSLKDSELPAIddqfdelaedeeddqqSRLKSRW  530
             I++YDM QA  DG+TV IYYESR+  L+L +S    +D+ +++++ED+E+D + RLKS+W
Sbjct  471   IDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKW  528

Query  531   AALEKVVGAEPRIRNVAADLVKHSEERNQGLVSMGQMPGKAMIVAMSREICVHLYNEITA  590
             + +E + GA PR+  +A D+++H E R+Q+      M GK+MIV+MSR I V+LY+EI  
Sbjct  529   SRIEALAGAKPRVEALAKDIIQHFETRQQA------MKGKGMIVTMSRRIAVDLYDEIIR  582

Query  591   LRPEWHDEDPEKGAIKVIMTGSASDKASLRPHIYSGQIKRR--LEKRFKDPLDPLKLVIV  648
             L+PEWH +D +KG IKV+MTGS+SD +S++ HI  G  KRR  LEKR KD  D L+LVIV
Sbjct  583   LKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHI--GPKKRRNLLEKRMKDVDDELQLVIV  640

Query  649   RDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKAAL  708
             RDMWLTGFD P +HT+Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GIA+ LK AL
Sbjct  641   RDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEAL  700

Query  709   KEYTGSKGKGRPTVDAHEAYSVLEEKLDVLRSLLHGFDCSDFLTGGHK----LLAGAANH  764
             KEYT S ++++ ++D++ A  ++  K DV++ +L  +D S F ++        ++ + + 
Sbjct  701   KEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDY  759

Query  765   VLSL-EDGKKRFADTALAMSKAFTLCCTLDEAKAVREEVAFFQAIKVILIK----REVSQ  819
             V++L ED ++RF  T   ++KAF+LC T   A+ + +E+AFF+A+K  L+K       ++
Sbjct  760   VIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGK  819

Query  820   QKKTDEERELVIRQIIGNAVVSGDVVDIFQAVGLDKPNIGLLDDTFLAEVRNLPEKNLAV  879
              +KT  E E  I Q+++++VV+ DV+D++Q++GL++P++++L D FL +V  L +KN+AV
Sbjct  820   TRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAV  879

Query  880   ELLERLLEDEIKSHYSTNLAQEKKFSELLVNVIKRYQNRSIETAQVIEELIGMAKKFAAA  939
             ELL+RLL +++KS   TN +  K+FSE+L N I++Y++RSIET++VIEELI +AK +   
Sbjct  880   ELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQE  939

Query  940   SQRGDALGLNDDELAFYDALANNEASVRELGHEILAKIAHELTASLRANVSVDWNSRESv  999
              QRG+ LGLN DE+AFYDALA++E++   +G+  L  IAHELT +++ N++VDW+ R+S 
Sbjct  940   QQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSA  999

Query  1000  raklrilvrrilrkYKYPPDHAEEAAQLILNQAETLCEA  1038
             +AK+R+ VRR+L+KY YPPD    A + +++QAE + + 
Sbjct  1000  KAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

117) ESA_00617 in NC_009778


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  780 bits (2951),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 466/1056 (45%), Positives = 744/1056 (71%), Gaps = 39/1056 (3%)

Query  2     LSEDDLEQQCLKWFAEQGWEVLHGPDIAPDGDNPLRASFHDVFLRPVMLEQLQSINPHLP  61
             ++EDDLEQ  L W+   G +   G +I+  +  P R S  DV L+  +   L+ IN+++ 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    VAVLEEVILRVAHAQSPDLVISNKAFQHLLLDGVPVE-YKRENKVVHDKALLMDFNHPAS  120
                +E  +  ++  +SP+L+ +N +F++ L++G+ +E Y  E + + +   ++DF+ P +
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  121   NRFMVVNQVAIQGTKQVRRPDVIGYINGLPVAVIELKSPIDANADIWAAFNQLQTYKNEL  180
             N F+ VNQ++I      +RPD++ +INGLP+ VIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEALVVSDGQNARIGSLTADEERFLPWKTISNEDDKPQFDWQLKTVVQGFFNRE  240
             ++LF  NE LV SDG N++ GSLTA+ +RF+ W++   + + +     L  +++G +N E
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  241   LLLDYIRYFVLFENDGKRLIKKI-AAYHQFHAVREAVAATIVASTGKHLPLRSNITPGSK  299
              LLD IRYFVLF++DGK  I KI AAYHQ+ AV  AV  +++AS+            G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSE----------QGDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+VVVTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   QDLLKQTPLQANDreelrellnareSGGIIFTTVQKFAPRDSEQSHPALNTRSNIVVISD  414
             ++LL+QTP QA +       L + ESGGI+FTT+QKF P ++E + +AL  R N++V++D
Sbjct  353   KGLLRQTPKQA-ETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLSATLDRETGLYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYV  474
             EAHR+QYG++A  D      KYGYAK +RDALPNA+F+GFTGTP+AS DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSEQVDELVEDEETGQQEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L E  +++ ED+E + +++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSAPRIQQVAADLVQHFEMRNAAMTGKAMIVAMSRDICVKLYDAIVAIRPDWHS  594
             R+E L G+ PR++ +A D++QHFE R+ AM GK+MIV+MSR I V LYD I+ ++P+WHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EDVEKGAIKVIMTGSASDNNVLQPHIYNKQTKKRLESRFKDLNDPLKLVIVRDMWLTGFD  654
             +D +KG IKV+MTGS+SD   +Q HI  K+ ++ LE R KD++D L+LVIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFD  649

Query  655   APCCHSMYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGK  714
              P  H+MYIDKPM+GHNLMQAIARVNRVF+DKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTVDAREAFAVLLEKFDIIHGMFSPSAGKPGFKYEGFSRDPLA--F--LRDAVNYILG  770
             +QT++D+  A  ++L K+D+I++M+        + Y  F+ D  +  +  + ++++Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLY------NLDYSKFNSDKKSERYYTISNTMDYVIG  762

Query  771   L-DEGKKRYLDVSLAMTKAWSLCNTLDEAKPLQEEFAFLSAIRVALLKLNPAAKFSQSEK  829
             L ++ ++R++     + KA +LC T   A+ L++E+AF+ A++ +L+KL  ++K +++ K
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  830   NSL-----LSKILDNAVVATGVEDLFALIGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884
              +      +++++ ++VV+ +V D++  +GL++P++++LSD+FL +V  + Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  885   EKLLNDGIHARSGNNVVQQKKYSDRLKAVLLKYNNRAIETAQVIEELIAMAKSFQEAMAR  944
             ++LL++ + +    N    K++S+ L   + KYN+R+IET++VIEELI +AK +++   R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  945   DEALGLNPDEIAFYDALAENESAVRELGDDVLKKLAVEVTLKLRQSTTVDWQVRESVRAR  1004
             ++ LGLN+DEIAFYDALA +E+A   +GD  L+ +A E+T  ++++  VDW  R+S +A+
Sbjct  943   GNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAK  1002

Query  1005  LRILVRQTLRKYKYPPDKTPHAVELILKQAEVVSNS  1040
             +R+ VR+ L+KY YPPD    AVE ++ QAE+++N+
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

118) Tola_1223 in NC_012691


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  778 bits (2945),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/1083 (46%), Positives = 766/1083 (71%), Gaps = 64/1083 (5%)

Query  3     TEDQLEQQCLDWFKELGYQYQNGYDIAPDGDTPERDDYHQVILHQRLVDQLGTLNPNLPH  62
              ED+LEQ  L+W++ LGY+Y++G +I+  + TPER    +V+LH+RL   L  +N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    DTRIELAKTVATTQTPILIKNNRAFHKYLIEGVPVE-YSVIEDGQSVTKNTHARLIDFEK  121
                      ++  ++P L+ NN +FH  LI+G+ +E Y   ++GQS+      ++IDFE 
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYD--DEGQSIVEIV--KIIDFEY  121

Query  122   VENNEFLVVNQFTITGTKGNRRPDVVVFINGLPMGVIELKNPADDHADIWNAYNQLQTYK  181
              +NN+FL VNQ+TI     ++RPD+V+FINGLP+ VIELKN++++  ++ ++Y+QL+TYK
Sbjct  122   PQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  182   EEIADLFALNEALVISDGWTARVGSLTANKERFLPWKTIESE-EDKPLLEFQLETMVRGF  240
               I++LF++NE LV SDG  ++ GSLTAN +RF+ W++ +++ E  P L   L+ +++G 
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLA-SLDVLIHGM  240

Query  241   FKPELLLDYIRYFVLFENDNDKIIKKI-AGYHQFHavraavkatviaaaCSDGVRDPRAN  299
             ++PE LLD IRYFVLF++D    I KI A+YHQ+              A + +V  +   
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYY-------------AVNKAVDRALLA  287

Query  300   YANQVISGSKKAGVVWHTQGSGKSISMVCYASKLLQQPEMNNPTLVVVTDRNDLDGQLFN  359
              ++Q   G  K+GV+WHTQGSGKS++MV +++KL+Q   +NNPTLVVVTDRNDLD QL++
Sbjct  288   SSEQ---GDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYS  342

Query  360   TFTMAQET-----LKQIPQQAEDRDSLRELLLNRQSGGIIFTTVQKFALLDNELEHPILS  414
             TF  ++       L+Q P+QAE R  L+  LL+ +SGGI+FTT+QKF   +NE   + L+
Sbjct  343   TFVKSKGRSGKGLLRQTPKQAETRKELKS-LLSVESGGIVFTTMQKFEPEQNETTMAALT  401

Query  415   ERSNIVVVSDEAHRSQYGNKARLTDVKDENGNVTGQRYVYGYSKYMRDALPNASFIGFTG  474
             ER N++V++DEAHR+QYG +A+  D         G+   YGY+KY+RDALPNA+F+GFTG
Sbjct  402   ERKNVIVMADEAHRTQYGFNAKYDD--------KGEGIKYGYAKYLRDALPNATFVGFTG  453

Query  475   TPISMDDKDTRGVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDINQEEIEALN-DQVE  533
             TP++  DK+T+ VFG+Y+ +YD+ +AV DG+TV IYYESR+  L++ Q    +L+ D+  
Sbjct  454   TPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ----SLDLDEAY  509

Query  534   DEIGEDEETSAREKIKSQWSALEKLVGAEPRIQQVAKDLVEHFTTRTETFPGKAMIVAMS  593
             ++I ED+E   ++++KS+WS +E L GA PR++ +AKD+++HF TR ++  GK+MIV+MS
Sbjct  510   NDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMS  569

Query  594   REICVDLYNAIVAIKPDWHSDDPHKGAIKVVMTGSASDIDKMQPHIYDKKTKKLFEKRYK  653
             R I VDLY+ I+ +KP+WHSDD +KG IKVVMTGS+SD    Q HI  KK ++L+EKR K
Sbjct  570   RRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMK  629

Query  654   DTDDELQLVIVRDMWLTGFDAPCCHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLVVDY  713
             D DDELQLVIVRDMWLTGFD P  HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGL+VDY
Sbjct  630   DVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDY  689

Query  714   IGIANELKNALKTYTNSQGKGKPTVDTAEAFAILMEKIDIVRGMFATPVDGAVFNYRPDF  773
             +GIA+ LK+ALK YT+S+ +++ ++DT  A  +++ K D++++M+   +D + FN  +D 
Sbjct  690   VGIAESLKEALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYN-LDYSKFN--SDK  745

Query  774   ETKPLQLLPGAVNHISGLSHKNNKGDDVRDGKRRFLDVMAALMKAFSLCNTMDEVNGYKN  833
              +     ++ +++ + GL++         D ++RF+  ++ L KAF+LC T    +  ++
Sbjct  746   KSERYYTISNTMDYVIGLGE---------DERQRFIKTVTELGKAFALCATEPTAQELND  796

Query  834   EIAFYGAIKTAFLK-----HSTVDKKCSDELRNSALRQILNNAVVADGVDDIFKMVGLDK  888
             EIAF+ A+K++++K          +K + E+ ++ + Q+++++VV+++V D+++ +GL++
Sbjct  797   EIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV-EAEINQLVSQSVVTEDVIDVYQTLGLEQ  855

Query  889   PNIGLLSEEFLEDVKNMKERNLAVELLEKLLRDEVKARMKNDVVQEKKYSERIMATLQKY  948
             P++++LS++FL DV  +K++N+AVELL++LL+++VK+ MK +    K++SE +  +++KY
Sbjct  856   PDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKY  915

Query  949   HNRNIETAQVIEELIQWAKEMQADAEMTDKLNLSVDEIAFYRALVTNEASVRVLGDDSLR  1008
             ++R+IET++VIEELIQ AK+++ + +  + L L+ DEIAFY AL ++E++   +GD  LR
Sbjct  916   NSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELR  975

Query  1009  QLAIELTQQLRKSATVDWQKRESVrarmrnlvrrllrrWKYPPDAAEEAIKLVLEQAEVL  1068
              +A ELT+ ++ +  VDW KR+S +A+MR  VRRLL++  YPPD    A+  V+EQAE++
Sbjct  976   AIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELM  1035

Query  1069  ADG  1071
             A+ 
Sbjct  1036  ANN  1038

119) EcE24377A_2911 in NC_009801


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  776 bits (2938),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 494/1080 (46%), Positives = 784/1080 (73%), Gaps = 55/1080 (5%)

Query  5     TESDIEVMVIEHLQGLGYEYVYGPDIEPSGINPLRSYQ-QVILEDKVRIALQRLNPHLSE  63
              E D+E + +E LQ+LGY+Y  G +I  +++ P R  + +V+L++++  AL+++N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  64    QKCEEALKQVMQISTPDLMANNLAFHRLLTEGINIEV-SKDGNTQGELACLIDFNDPTNN  122
             +  E AL ++    +P+L+ NNL+FH  L +GI+IE    +G++  E+  +IDF+ P NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  123   EFLVINQLTIKEGNHTRRPDLILFINGLPLVVIELKNAADENATVTGAYNQIKTYQNQIP  182
             +FL +NQLTI +G+  +RPD++LFINGLP+VVIELKN+++E   V ++Y+Q+ TY+ +IP
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  183   VLFNYNAFNVISDGLEAKAGTVSADFSRYMTWKTANGKTQATSTQPQLEVLLQGLLNPVT  242
              LF +N   V SDG+++KAG+++A++ R+MTW++ +G+T++++  + L+VL++G+LNP T
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPET  245

Query  243   LLDVIRHFIVFEASKHEDSKGIISIRTVKKMAAYHQYYAVNAAVLSTIRASGVNADSPSA  302
             LLD+IR F++F    ++D+KG IS    K +AAYHQYYAVN AV                
Sbjct  246   LLDLIRYFVLF----QDDGKGHIS----KILAAYHQYYAVNKAV----------------  281

Query  303   EVALRQQGRNSKVLVNAQKTGDRKAGVVWHTQGSGKSLSMVFYTGKIVLALNNPTVVVIT  362
                        + L+ +   GD K+GV+WHTQGSGKSL+MVF++GK++  LNNPT+VV+T
Sbjct  282   ----------DRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVT  331

Query  363   DRNDLDDQLFGTF-----SSATQLLRQTPKQADNREELKEYLRVASGGVVFTTIQKFQPN  417
             DRNDLD+QL++TF      S+  LLRQTPKQA+ R ELK  L V SGG+VFTT+QKF+P+
Sbjct  332   DRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPE  391

Query  418   DGSNIYELLSDRTNIVVIADEAHRSQYGFSAKEVDVKDSEGNVTGKRTVYGFAKYMRDAL  477
             +       L++R N++V+ADEAHR+QYGF+AK       +++  G +  YG+AKY+RDAL
Sbjct  392   QNETTMAALTERKNVIVMADEAHRTQYGFNAK------YDDKGEGIK--YGYAKYLRDAL  443

Query  478   PNATYLGFTGTPIEKTDVNTPAVFGNYVDIYDISQAVEDGATVRIFYESRLAKIAISDEG  537
             PNAT++GFTGTP+  TD NT  VFGNY+D+YD++QAV DG+TV+I+YESR+  + ++ ++
Sbjct  444   PNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP-QS  502

Query  538   RQLIedfddefnedeLTLTQKERSKWARIEGLIGSSKRIKAIAADMVLHFEQRLKSNADH  597
              +L E ++D  +++E  + Q+ +SKW+RIE+L G+  R+ A+A D++ HFE R   +A  
Sbjct  503   LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETR--QQAMK  560

Query  598   GKGMIVTMSRRIAAELYKEIIALKPEWHSDDLNDGIIKVVMTSSAADGPEIAKHHTTKKE  657
             GKGMIVTMSRRIA +LY EII LKPEWHSDD + G+IKVVMT+S++D   + +H   KK 
Sbjct  561   GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKR  620

Query  658   RQVLANRMkddddklklVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAIARVNRVYKD  717
             R++L +RMKD DD L+LVIVRDMWLTGFD PSMHT+YIDKPMKGHNLMQAIARVNRV+KD
Sbjct  621   RNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKD  680

Query  718   KIGGLVVDYLGIASDLKEALSFYSDAGGRGDPAEVQEEAVTLMQEKLEILEGMMHGYDYK  777
             K GGL+VDY+GIA  LKEAL  Y+++ ++++ A   + AV LM  K +++++M+   DY 
Sbjct  681   KPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYS  739

Query  778   AYFAATTSQRLTIILESENHILGLDNGKGKMRFlaavaalsqafalaTPHDKAMEAAPEV  837
              + +   S+R   I ++ + ++GL+++  + RF+ +V+ L++AFAL + +  A E   E+
Sbjct  740   KFNSDKKSERYYTISNTMDYVIGLGED-ERQRFIKTVTELGKAFALCATEPTAQELNDEI  798

Query  838   AFFQAVKARLNKFTENS-DGSEEEHNDSLEVRVKQTIDQALVTDKVVDIFDAAGIQKPDI  896
             AFF+AVKA L K+ + + +G        +E  ++Q + Q++VT+ V+D++++ G+++PD+
Sbjct  799   AFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDL  858

Query  897   SVLSEEFLQEMKDYQHRNIALETLKKLLSDEIKVRSNQSITQGKKLIDMLTSAINGYQNK  956
             S+LS++FL+++ + +++N+A+E L++LL +++K   + + T +K++ +ML ++IN Y+++
Sbjct  859   SILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSR  918

Query  957   VLTAAEVIDELIKLAKTIQESDSLASQLNLSAYEYAFYSAVADNDSArelmekeklrelA  1016
              + ++ VI+ELI+LAK I++ +  +++L L++ E AFY A+A +++A+E M    LR +A
Sbjct  919   SIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIA  978

Query  1017  VVLTEAIRNNVSLDWTvkeaarakirvvvkrllkkYGYPPDMSLLATETILKQAELLAGE  1076
               LT ++++N+++DW+ +++A+AK+RV V+RLLKKYGYPPD+  +A E ++ QAEL+A +
Sbjct  979   HELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

120) MM_0431 in NC_003901


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  775 bits (2934),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 484/1067 (46%), Positives = 754/1067 (71%), Gaps = 53/1067 (4%)

Query  2     NEDQLEQLCLEWFRDNSWDVLYGPDIAPDSDNPERKDYREVILKHYLQESLEKINLHLPF  61
             NED+LEQ+ LEW++  + D   G +I+  S  PERK  ++V+L + L+ +L KIN ++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    NAIEQAI-ALVLKPESLDLITNNRAFHRLLLEGVPVE-YRKDDETIHDRAFLIDFENIAN  119
               IE+A+  L L   + +L+ NN +FH  L++G+ +E Y  ++++I +   +IDFE   N
Sbjct  66    RFIEKALHELTLEKSP-NLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  120   NRFLAVNQFTIQGTKRPRRLDVVCFINGLPIAVLELKSPEDENVDIWDAFNQLQTYKDEI  179
             N FLAVNQ+TI      +R D+V FINGLPI V+ELK++ +E V++ D+++QL+TYK  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   SDLFVFNEALVVSDGYNARIGALTANKERFSPWRAVKNE-DDKPLLEWQLETLVRGFFDR  238
             ++LF FNE LV SDG N++ G+LTAN +RF  WR+   + +  P L   L+ L++G ++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLA-SLDVLIHGMLNP  243

Query  239   EMLLDYIRFFVLFENDG-GAIIKKIAGYHQFHAVREAVKATIIAAQDPKGVAEKRAKYGD  297
             E LLD IR+FVLF++DG G I K +A+YHQ+ AV  AV  +++A+ +             
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQ------------  291

Query  298   EVVPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMNNPTLLVVTDRNDLDGQLFQTF-  356
                 G  K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPTL+VVTDRNDLD QL+ TF 
Sbjct  292   ----GDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFV  345

Query  357   ----SNAHELFKQTPVQANDRDELRQLLSERESGGIIFTTVQKFSPFEDEGAHPILNGRH  412
                  ++  L++QTP QA+ R EL+ LLS  ESGGI+FTT+QKF P ++E + + L  R 
Sbjct  346   KSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERK  404

Query  413   NIVVISDEAHRSQYGHKGRFIKVKNKDGNVTGNKLVFGFSQYMRDALPNASFIGFTGTPI  472
             N++V++DEAHR+QYG ++++        +  G+ + +G+++Y+RDALPNA+F+GFTGTP+
Sbjct  405   NVIVMADEAHRTQYGFNAKY--------DDKGEGIKYGYAKYLRDALPNATFVGFTGTPV  456

Query  473   ALEDKDTRSVFGDYVSIYDIQDAVDDGATVAIYYESRLAKLDLNHA-EIERLSdqvediv  531
             A  DK+T+ VFG+Y+ +YD+ +AV DG+TV IYYESR+  L+L ++ +++    +  + +
Sbjct  457   ASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLD----EAYNDI  512

Query  532   edeedASNREKTKGGWSRLEKLVGAEPRIRQVAADLVGHFEARTESIDGKAMIVAMSREI  591
              ++++   +++ K+ WSR+E L GA PR+  +A D++ HFE+R +++ GK+MIV+MSR I
Sbjct  513   TEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRI  572

Query  592   CVHLYDAIVELRPDWHDTDPSKGTIKIVMTGSASDRELLQPHIYNKQTRKRLEKRFKDNN  651
              V+LYD I+ L+P+WH  D  KG IK+VMTGS+SD   +Q HI  K+ R+ LEKR KD +
Sbjct  573   AVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVD  632

Query  652   DPLKLVIVRDMWLTGFDVPCCHTMYIDKPMKGHNLMQAIARVNRVFKNKPGGLVVDYIGI  711
             D L+LVIVRDMWLTGFDVP  HTMYIDKPMKGHNLMQAIARVNRVFK+KPGGL+VDY+GI
Sbjct  633   DELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGI  692

Query  712   ANELKQALKTYTDARGRGEPTLRAEEAFSVLLEKMDVVHGLFHGFDYSEFV----DQAYK  767
             A+ LK+ALK YT++ ++++ ++ ++ A  ++L K DV+++++  +DYS F      + Y 
Sbjct  693   AESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYY  751

Query  768   LLVPASNHILGL-DDGKKRFLDAVLAINKAYSLCGTLDEAKELRAEi----affsaikaa  822
              +  + + ++GL +D ++RF+ +V  + KA++LC+T   A+EL  EI    A  +++   
Sbjct  752   TISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKL  811

Query  823   iskfTYVDKKRTQEEMNSALKQILDNAVIAEGVVDVFQLAGLEKPDIGLLSDEFLEDVRQ  882
             +        ++T  E+++ ++Q++ ++V++E+V+DV+Q  GLE+PD+++LSD+FL DV  
Sbjct  812   LQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEG  871

Query  883   MPYRNLAVELLEKLLKDNIKSKTSNNVVQEKKYSDRLEETLRKYNNRAIETAQVIEELIQ  942
             +  +N+AVELL++LLK+++KS    N    K++S+ L +++ KYN+R+IET++VIEELIQ
Sbjct  872   LKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQ  931

Query  943   MAKEFQEALKRNDELGLQPDEVAFYDALANNESAVRELGDEILKKIAVEITEKLRKSTIV  1002
             +AK++++  +R +ELGL++DE+AFYDALA++E+A   +GD  L+ IA E+T  ++ +  V
Sbjct  932   LAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGV  991

Query  1003  DWQVRDSVRAKLRILVRRTLQRYKYPPDKAPEAIELVLKQAEALSNS  1049
             DW  RDS +AK+R+ VRR L++Y YPPD    A+E V+ QAE ++N+
Sbjct  992   DWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

121) hsdR in NC_010617


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  770 bits (2913),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/1044 (45%), Positives = 748/1044 (72%), Gaps = 24/1044 (2%)

Query  4     FNENVVEQAALEYFAELGYRRVHGPDIAPGEPGAERESYEDVMLWGHVRDALRRINRGAD  63
             FNE+ +EQ ALE +  LGY    G +I+     +ER S  DV+L  ++  ALR+IN + +
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  64    AALVAEAVKTVQRAESQSPIDENARLHKLITEGVPVEHRGDDGLLRTTRLWLMDFDEPEN  123
             + ++  A+  +    S + +++N  +H  + +G+ +E+ +D+G      + ++DF+ P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  124   NDWVAVSQFTIVENGKNRRPDVLVMVNGLPLSLLELKNPAAEHATLKSAWNQVQTYRHDI  183
             ND +AV+Q+TIV+ + ++RPD+++ +NGLP+ ++ELKN++ E   +  + +Q++TY+  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  184   PSVFVPNAVTVISDGTSAAMSSYSGAFEHYAPWKTIEGR-EVVSNRPALEVLIKGVFEPK  242
             P +F  N V V SDG ++  +S ++ ++++  W++ +G+ E  +  ++L+VLI G+++P 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  243   RFLDLLKNFVVFSDETVTDKSTGQPTRALVKRVAKYHQYWAVNAAVESTVQASSPDGDRR  302
              +LDL++ FV+F D+     + G+ ++ L    A YHQY AVN AV+ ++ ASS +GD +
Sbjct  245   TLLDLIRYFVLFQDD-----GKGHISKIL----AAYHQYYAVNKAVDRALLASSEQGDGK  295

Query  303   GGVVWHTQGSGKSFEMVFYAAKIMRDPRMANPTLVFITDRNDLDDQLFGETFAPAR----  358
             GGV+WHTQGSGKS+ MVF+++K+++   + NPTLV +TDRNDLD+QL++ TF  ++    
Sbjct  296   GGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYS-TFVKSKGRSG  352

Query  359   --ILPETPVQAATRSDLRAKLKRASGGIVFTTLQKFAPGEDGDTNPVLTDRRNVIVIADE  416
               +L +TP QA TR +L++ L   SGGIVFTT+QKF P ++  T + LT+R+NVIV+ADE
Sbjct  353   KGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADE  412

Query  417   AHRSQYGFSETLDRHGR-LKSGLAKHMRDALPGATYLGFTGTPIESKDKSTRAVFGDYVD  475
             AHR+QYGF+   D  G  +K G AK +RDALP AT++GFTGTP+ S DK+T+ VFG+Y+D
Sbjct  413   AHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYID  472

Query  476   VYDLTRAVEDGATVRIFYESRLAKIELSEVDHAALDELADEITESVEEDTATAAKSRWSR  535
             VYD+T+AV DG+TV+I+YESR+  ++L++     LDE  ++ITE  EED     KS+WSR
Sbjct  473   VYDMTQAVADGSTVKIYYESRVIPLNLPQ--SLDLDEAYNDITEDQEEDVKQRLKSKWSR  530

Query  536   LEAVVGAEARLDLVARDIVEHWEKRRESLFGKGMIVTMSRRIAVRLYEKIVALRPDWHSD  595
             +EA+ GA +R++ +A+DI++H E R++++ GKGMIVTMSRRIAV LY+ I+ L+P+WHSD
Sbjct  531   IEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSD  590

Query  596   DPAQGKIKVVMTGSASDPAEFQPHIHSKDVRKDLKLRAKNADDPLELVIVRDMWLTGFDA  655
             D  +G IKVVMTGS+SDP+ FQ HI +K  R+ L  R K+ DD L+LVIVRDMWLTGFD 
Sbjct  591   DDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDV  650

Query  656   PSMHTMYVDKTMQGAGLMQAIARVNRTFRDKPGGLIVDYIGVFANLQNALSEYSPSDREQ  715
             PSMHTMY+DK M+G  LMQAIARVNR F+DKPGGLIVDY+G+  +L++AL EY+ SD+ Q
Sbjct  651   PSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ  710

Query  716   AGVPIDEMVQVMLEKHDIVRGLLHGVQFDSSPELTASQRLNEYAKVLDFVMA-DPDRTSR  774
             +++  D  V++ML K D+++++L  +++        S+R    ++ +D+V++ + D   R
Sbjct  711   TAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQR  770

Query  775   FNDQVlalakafalagaRDEAAAIRNNVRLFTDVRAAILK-IQNPDSGRGGSGAVGIDTA  833
             F   V  L+KAFAL ++   A  + +++ +F  V+A+++K +Q P  G+    +  +++ 
Sbjct  771   FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAE  830

Query  834   LGQLLNEAVAADQVVDVYKLAGVDTPDLSILSDEFLNSFAEKDKPNLQMGLLHRLLNDQI  893
             + QL++++V +++V+DVY+  G++ PDLSILSD+FL+      + N+ + LL+RLL++Q+
Sbjct  831   INQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQV  890

Query  894   RTVQRTNIVQARKFSELLDEAINRYTNRSLTTAEIIAELVKLAKQMRDDQKRHDDLGLSS  953
             +++ +TN   +++FSE+L+++IN+Y +RS+ T+ +I EL++LAK+++++Q+R ++LGL+S
Sbjct  891   KSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNS  950

Query  954   AEVALYDAIAQNDSAVLEMGDETLKKIAVDVVWAVRNSVVIDWDQKEsvrasmrssvrrI  1013
              E+A+YDA+A +++A   MGD  L+ IA ++  +V++++ +DW +++S +A MR +VRR+
Sbjct  951   DEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRL  1010

Query  1014  LAKYDYPPDAEDEAVNLVLEQAEL  1037
             L KY+YPPD +  AV+ V+EQAEL
Sbjct  1011  LKKYGYPPDLQKMAVEQVVEQAEL  1034

122) Shewana3_4244 in NC_008573


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  770 bits (2913),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 483/1090 (45%), Positives = 755/1090 (70%), Gaps = 68/1090 (6%)

Query  3     TEDQLEQLCLDWFTDQGYLYKNGYDIAPDGDSPERDDYHQVVLKQRLLERLEVLNPELPQ  62
              ED+LEQ+ L+W+   GY YK+G +I+  + +PER    +VVL +RL   L  +N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    ESLDVVVNTVSTPDTPVLIKSNRGFHKYLIEGVPVEYTVYEDGETKTKHTHARLMDFTNP  122
               ++  ++ ++   +P L+ +N  FH  LI+G+ +E   Y+D E ++     +++DF  P
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIE--DYDD-EGQSIVEIVKIIDFEYP  122

Query  123   DNNEFLVVNQFTITGKKGNRRPDVVVFINGLPIAVIELKNPADEHADIWHAYNQLQTYKD  182
             +NN+FL VNQ+TI     ++RPD+V+FINGLPI VIELKN+++E  ++ ++Y+QL+TYK 
Sbjct  123   QNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  183   EIPDLFVFNESLVVSDGWTARVGSLTANKERFLPWKTVSGEDDKPLWDYQLETMVKGFFK  242
              IP+LF FNE LV SDG  ++ GSLTAN +RF+ W++  G+ + +     L+ ++ G ++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLN  242

Query  243   PDLLLDYIRYFVLFETDNDTVIKKI-AGYHQFHavraaveatvraKQADGELPLVAESMG  301
             P+ LLD IRYFVLF+ D    I KI A+YHQ+ AV          K  D  L        
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVN---------KAVDRAL--------  285

Query  302   QYQVQATKGLDKIKPGSGKAGVVWHTQGSGKSISMVCYASKLLQQPAMNNPTIVVVTDRN  361
                      L     G GK+GV+WHTQGSGKS++MV +++KL+Q   +NNPT+VVVTDRN
Sbjct  286   ---------LASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRN  334

Query  362   DLDGQLFNTFGMAHET-----LKQVPSQADGRDKLRELLLSRQSGGIIFTTIQKFALLAE  416
             DLD QL++TF  +        L+Q P QA+ R  L+ LL S +SGGI+FTT+QKF    +
Sbjct  335   DLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLL-SVESGGIVFTTMQKFEPEQN  393

Query  417   ETEHPVLSTRANIVVVSDEAHRSQYGNKSKLVDVKDANGNVISQKFVYGYSKYMRDALPN  476
             ET  + L+ R N++V++DEAHR+QYG ++K     D +G+ I     YGY+KY+RDALPN
Sbjct  394   ETTMAALTERKNVIVMADEAHRTQYGFNAKY----DDKGEGIK----YGYAKYLRDALPN  445

Query  477   ASFIGFTGTPIAMDDKDTRGVFGEYVSIYDIQDAVDDGATVPIYYESRLAKLDINQAEIE  536
             A+F+GFTGTP+A  DK+T+ VFG+Y+ +YD+ +AV DG+TV IYYESR+  L++ Q+   
Sbjct  446   ATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS---  502

Query  537   QLN-DQiedeigedeeTASREKIKSQWATLEKLVGAEPRIQQVAQDLVNHFTTRTETFPG  595
              L+ D+  ++I ED+E   ++++KS+W+ +E L GA PR++ +A+D+++HF TR ++  G
Sbjct  503   -LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKG  561

Query  596   KAMIVAMSREICVDLYNAIVAIKPEWHNDDPAKGAIKIVMTGSASDKPKMQPHIHDKKTK  655
             K+MIV+MSR I VDLY+ I+ +KPEWH+DD  KG IK+VMTGS+SD    Q HI  KK +
Sbjct  562   KGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRR  621

Query  656   KLFEARYKDTQDELQLVIVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKDK  715
             +L+E R KD +DELQLVIVRDMWLTGFD P  HTMY+DKPMKGHNLMQAIARVNRVFKDK
Sbjct  622   NLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDK  681

Query  716   PGGLVVDYIGIANELKNALKTYTNSQGKGQPTVDTAEAFSVLMEKVDIVRGMFATPVDGK  775
             PGGL+VDY+GIA+ LK+ALK YT+S+ ++Q ++DT  A  +++ K D++++M+     +K
Sbjct  682   PGGLIVDYVGIAESLKEALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSK  740

Query  776   VFNYRPDFETDALRLLPGAVNHLSGLSHTDSKGKEVRDGKRRFLDVMAALGKAYSLCNTM  835
                + +D  ++    ++ +++ + GL++         D ++RF+  ++ LGKA++LC T 
Sbjct  741   ---FNSDKKSERYYTISNTMDYVIGLGE---------DERQRFIKTVTELGKAFALCATE  788

Query  836   DETRGYKNEIAFYSAIKAAFMK----HSTVDKKRTDEERNTALKQILDNAVIADGVDDIF  891
               ++  ++EIAF+ A+KA+++K          ++T  E ++ ++Q++ ++V++++V D++
Sbjct  789   PTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVY  848

Query  892   SMVGLDKPNIGLLSEEFLEDVKNMKEKNLAVELLEKLLRDEVKARMKNDVVQEKKYSDRI  951
               +GL++P++++LS++FL DV  +K+KN+AVELL++LL+++VK+ MK +    K++S+ +
Sbjct  849   QTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEML  908

Query  952   LTTLNKYHNRSIETAQVIEELIQWAKEMQEDAEMVDKLNLSVDEMAFYRALVENESSVRE  1011
               ++NKY++RSIET++VIEELIQ AK+++++ +  + L L+ DE+AFY AL  +E++   
Sbjct  909   GNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEA  968

Query  1012  LGNDDLRNLAIELTQQLRKSATVDWQKRESVrarmrnlvrrllrrWKYPPDSAEEAIKLV  1071
             +G+ +LR +A ELT+ ++ +  VDW KR+S +A+MR  VRRLL++  YPPD    A+  V
Sbjct  969   MGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQV  1028

Query  1072  LEQAEVLADG  1081
             +EQAE++A+ 
Sbjct  1029  VEQAELMANN  1038

123) Desal_2732 in NC_012881


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  768 bits (2907),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 472/1052 (45%), Positives = 738/1052 (71%), Gaps = 35/1052 (3%)

Query  3     NEAALEKLAISWFEDEGYENHHGPDLNPESDGSGERSSFDDVLLLSPLRSAVSCINPQLP  62
             NE  LE++A+ W++  GY+   G +++  +  + ER S  DV+L   L  A+  IN+++ 
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISM-TSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  63    SSAVDDVIHQLTTLSHPVSVKANQLFHRLLRNGLDV-SYKRDGETIADKAFLIDFQEWQN  121
             +  ++  +H+LT    P  +  N  FH  L NG+++  Y  +G++I +   +IDF+  QN
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  122   NIFWVVDQLTLQGTKDKRRPDLIVYVNGLPLAVIELKSPVDDSVGVDEAFNQLQTYRHEL  181
             N F  V+QLT+     K+RPD+++++NGLP+ VIELK++ +++VGV+++++QL+TY+  +
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  182   PDLAMFNEALIASDGIKARVGSLTASREWFLPWRYRKSEDDRPSFEYELKNVVEGFFDRK  241
             P+L  FNE L++SDGI+++ GSLTA+ ++F+ WR + ++ + ++    L  +++G ++  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  242   LFLEYVRDFVLFESDDTSTIKKI-AGYHQFHGVRHAVEAIVQASSAAASDEQRGRGGVIW  300
              +L+ +R FVLF+ D+ + I KI A+YHQ+ +V  AV+  + ASS  +     G+GGVIW
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGD----GKGGVIW  300

Query  301   HTQGSGKSISMCCLAGKLIRHPELTNPTLVVVTDRNDLDGQLYETFCK-----AGDLLSD  355
             HTQGSGKS++M  ++GKLI+   L NPTLVVVTDRNDLD QLY TF K     + +LL +
Sbjct  301   HTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  356   TPVQVEDRTSLRKVLNERQSGGIIFTTIQKFSLSDGETVFPALSDRRNIIVIADECHRSQ  415
             TP Q E R  L+ +L+  +SGGI+FTT+QKF   + ET  +AL++R+N+IV+ADE HR+Q
Sbjct  359   TPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQ  417

Query  416   YGFQSKLDEKKGAFTVGYAQHIRDALPNATFTGFTGTPVSLEDKDTQAVFGEYVSIYDIE  475
             YGF++K D+K  ++  GYA+ +RDALPNATF GFTGTPV+  DK+TQ VFG+Y+ +YD+ 
Sbjct  418   YGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  476   QAQQDGATVPLFYESRLAKLDLNKEELPVIddtvdeltedeeSAQAERTKGRWAALAKLV  535
             QA  DG+TV ++YESR+  L+L  + L + +   D   ++EE  + +R K++W+ +  L 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLP-QSLDLDEAYNDITEDQEEDVK-QRLKSKWSRIEALA  535

Query  536   GSEPRLKQIAEDLVQHFEARLQVIDGKAMIVCMSREICVKMFDALTAIRPEWTGSKMSDG  595
             G+ PR+  +A D++QHFE+R Q + GK+MIV MSR I V ++D +  ++PEW +      
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSD-----  590

Query  596   TYDPADGGIRIIMTSNAADPESMQNHSYSKQQKKALEKRFKDPADPLKIVIIRDMWLTGF  655
               D   G I+++MT++++DP S Q H  +K++++ LEKR KD  D L++VI+RDMWLTGF
Sbjct  591   --DDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGF  648

Query  656   DAPCAHTMYIDKPMKAHNLMQAIARVNRVFKGKPGGLVVDYIGIASELKNALHTYTNSGG  715
             D P  HTMYIDKPMK+HNLMQAIARVNRVFK+KPGGL+VDY+GIA  LK+AL  YT+S+ 
Sbjct  649   DVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQ  708

Query  716   RGGRPTIDVTEALFILKEKLQVARDIFHEFDYSEYAT-KAVE---LLPSAADYVVA-NEN  770
               ++ +ID   A+ ++  K +V +D++ ++DYS + + K  E    ++++ DYV++  E+
Sbjct  709   --AQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGED  766

Query  771   RKKEFFDVVVAMTRAQALCGTLDEAVAFRDEITFFQAVK----MFISKATKPKKKLSQQE  826
              ++ F+  V  + +A ALC+T   A  + DEI+FF+AVK     ++  +   K + +  E
Sbjct  767   ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAE  826

Query  827   KEAVLNQLLAKAVVPEGVDDIFALAGLDKPDISILSDEFLEDVRHMEHRNLAVELLQKLI  886
              EA +NQL++++VV E+V D++   GL++PD+SILSD+FL DV  + ++N+AVELL++L+
Sbjct  827   VEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLL  886

Query  887   NDEVHSKSRRNETQRKKFSERLKASLTKYRNRAIETAQVIEEMIQLAKELNEALKRGEKL  946
             +++V S  + N T  K+FSE L  S+ KY +R+IET++VIEE+IQLAK++++  +RG+ L
Sbjct  887   KGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNEL  946

Query  947   GLNSSEIAFYDALELNESAVRDLGDEVLKAIARELTQKLRNSVTVDWQHKESVRAKMRNL  1006
             GLNS EIAFYDAL  +E+A   +GD  L+AIA+ELT+ +++++ VDW  ++S +AKMR  
Sbjct  947   GLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVA  1006

Query  1007  VRRILKRYKYPPDAQKEAVEKVLSQAEELADE  1038
             VRR+LK+Y YPPD QK AVE+V+ QAE +A++
Sbjct  1007  VRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

124) VEJY3_11755 in NC_016613


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  765 bits (2894),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 490/1087 (46%), Positives = 768/1087 (71%), Gaps = 72/1087 (6%)

Query  3     TEDQLEQQCLDWFKELGYQYQNGYDIAPDGNTPERENYQQVTLQARLVSALETLNPNVPS  62
              ED+LEQ  L+W++ LGY+Y++G +I+  + TPER + ++V L+ RL  AL  +N+++ +
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    DTLIEVAKTVATPQTPILIKNNKAFHQYLIEGVPVE-YSVMEHEQWVTKHTHVRLIDFDD  121
               +      ++  ++P L+ NN +FH+ LI+G+ +E Y   ++ Q +     V++IDF+ 
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYD--DEGQSIV--EIVKIIDFEY  121

Query  122   RENNEFLVVNQFTITGTKVNRRPDVIVFINGLPMAVIELKNPADDHADIWNAYNQIQTYK  181
              +NN+FL VNQ+TI     ++RPD+++FINGLP+ VIELKN++++  ++ ++Y+Q++TYK
Sbjct  122   PQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  182   EEIADLFVFNEALVISDGWTARVGSLTANKERFLPWKTIEDE-DDKPLLEFQLETMVRGF  240
               I++LF FNE LV SDG  ++ GSLTAN +RF+ W++ +++ +  P L   L+ +++G 
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLA-SLDVLIHGM  240

Query  241   FKPELLLDYIRYFVLFENDGDKIIKKI-AGYHQFHavraavkatviaattSDQVTEPRAN  299
             ++PE LLD IRYFVLF++DG   I KI A+YHQ+ AV                 +  RA 
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNK---------------AVDRAL  285

Query  300   YANTVVPGSKKAGVVWHTQGSGKSISMVCYASKLLQQPEMNNPTLVVVTDRNDLDGQLFN  359
              A++   G  K+GV+WHTQGSGKS++MV +++KL+Q   +NNPTLVVVTDRNDLD QL++
Sbjct  286   LASSE-QGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYS  342

Query  360   TFTMAQET-----LKQIPQQAEdrdslrdlllnrQSGGIIFTTVQKFALLDEEMAHPILS  414
             TF  ++       L+Q P+QAE R  L+ LL   +SGGI+FTT+QKF   ++E + + L+
Sbjct  343   TFVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALT  401

Query  415   ERSNIVVVSDEAHRSQYGNKARLVDVKNEGGNVVDQRYVYGYSKYMRDALPNAAFIGFTG  474
             ER N++V++DEAHR+QYG +A+  D K EG +       YGY+KY+RDALPNA+F+GFTG
Sbjct  402   ERKNVIVMADEAHRTQYGFNAKYDD-KGEGIK-------YGYAKYLRDALPNATFVGFTG  453

Query  475   TPISMDDKDTRGVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDINQD-EIEALNDQVe  533
             TP++  DK+T+ VFG+Y+ +YD+ +AV DG+TV IYYESR+  L++ Q  +++   +++ 
Sbjct  454   TPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDIT  513

Query  534   eeigedeetesreKIKSQWSALEKLVGAEPRIKQVAKDLVEHFTTRCETFPGKAMIVAMS  593
             E+  ED       ++KS+WS +E L GA PR+  +AKD+++HF TR ++  GK+MIV+MS
Sbjct  514   EDQEEDVKQ----RLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMS  569

Query  594   REICVDLYDAIVAIKPEWHSDDPNKGAIKIVMTGSAADKAKMQPHIHDKKTKKLFEKRYK  653
             R I VDLYD I+ +KPEWHSDD +KG IK+VMTGS++D +  Q HI  KK ++L+EKR K
Sbjct  570   RRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMK  629

Query  654   DTDDELQLVIVRDMWLTGFDAPCCHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLVVDY  713
             D DDELQLVIVRDMWLTGFD P  HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGL+VDY
Sbjct  630   DVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDY  689

Query  714   IGIANELKNALKTYTNSQGKGQPTVDTAEAFAVFMEKIDVIRGMFATPVDGDVLNYRPDF  773
             +GIA+ LK+ALK YT+S+ ++Q ++DT  A  + + K DVI++M+        L+Y + F
Sbjct  690   VGIAESLKEALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYN------LDY-SKF  741

Query  774   ETKPLQ----LLPGAVNHISGLSHRNSKGEEVRDGKRRFLDVMAALMKAFSLCNTLDEVD  829
             ++         ++ +++ + GL++         D ++RF+  ++ L KAF+LC T    +
Sbjct  742   NSDKKSERYYTISNTMDYVIGLGE---------DERQRFIKTVTELGKAFALCATEPTAQ  792

Query  830   GYKSEIAFYGAIKTAFLK-----HSTVDKKRSDELRNSALRQILNNAIVADGVDDIFKTV  884
               + EIAF+ A+K++++K          +K + E+ ++ + Q++++++V+++V D+++T+
Sbjct  793   ELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV-EAEINQLVSQSVVTEDVIDVYQTL  851

Query  885   GLDKPNIGLLSEEFLEDVKHMKEKNLAVELLEKLLRDEVKARMKNDVVQEKKFSERIMST  944
             GL++P++++LS++FL DV  +K+KN+AVELL++LL+++VK+ MK +    K+FSE + ++
Sbjct  852   GLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNS  911

Query  945   LQKYHNRSIETAQVIEELIQWAKEMQADAEMMDKLNLSTDEIAFYRALVTNEASVRTLGD  1004
             ++KY++RSIET++VIEELIQ AK+++ + +  + L L++DEIAFY AL ++E++  ++GD
Sbjct  912   INKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGD  971

Query  1005  DNLRQLAIELTHQLRKSATVDWQKRESVrarmrnlvrrllrrWKYPPDAAEEAIKLVLDQ  1064
              +LR +A ELT  ++ +  VDW KR+S +A+MR  VRRLL++  YPPD    A+  V++Q
Sbjct  972   KELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQ  1031

Query  1065  AEVLADG  1071
             AE++A+ 
Sbjct  1032  AELMANN  1038

125) Psest_4044 in NC_019936


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  765 bits (2894),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/1050 (44%), Positives = 735/1050 (70%), Gaps = 45/1050 (4%)

Query  14    WFQQVGWRFAHGPDIAPDSSAPERTDYRQVVlrerllaalarINPQIPAAALEQAVHALQ  73
             W+Q +G  +  G +I+  S +PER   ++VVL+ERL  AL +IN++I +  +E+A+H L 
Sbjct  17    WLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELT  76

Query  74    TVSEPQMVVRNRSVHRLLLSGVAVQ-FEIGEQKKQDWVYFIDFAQPSNNDFLVVNQFTIT  132
                 P+++  N + H  L++G+ ++ ++   Q   + V +IDF  P NNDFL VNQ+TI 
Sbjct  77    LEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIV  136

Query  133   GTRQPRRPDLIAFVNGLPLAVVELKNPANEQTDVWDAFNQLQTYKDEISDLFNSNAALVV  192
                  +RPD++ F+NGLP+ V+ELKN++NE  +V D+++QL+TYK  I++LF  N  LV 
Sbjct  137   NGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVT  196

Query  193   SDGWTARVGSLTANAERMLPWRTVLNEDDRPRLQMELETVVRGFFKPELFLDYVRHFVLF  252
             SDG  ++ GSLTAN +R + WR+   + + +     L+ +++G ++PE +LD +R FVLF
Sbjct  197   SDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLF  256

Query  253   EQDGDSIVKKI-AGYHQFHAVREAVRATVIASQHADKGVLAIHEERATYAKEVKPGSRKA  311
             ++DG + + KI A+YHQ+ AV  AV          D+++LA  E+          G  K+
Sbjct  257   QDDGKGHISKILAAYHQYYAVNKAV----------DRALLASSEQ----------GDGKG  296

Query  312   GVVWHTQGSGKSITMACYAGKLLQQSEMKNPTLVVVTDRNDLDGQLFATFC-----AASD  366
             GV+WHTQGSGKS+TM  ++GKL+Q   ++NPTLVVVTDRNDLD QL++TF      ++ +
Sbjct  297   GVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKG  354

Query  367   LLKTTPQQAGDRDELREMLASREAGGIIFTTVQKFALQEDEEKHPLLSDRTNIVVISDEA  426
             LL+ TP+QA  R EL+ +L+  E+GGI+FTT+QKF  +++E   + L++R N++V++DEA
Sbjct  355   LLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEA  413

Query  427   HRSQYGSKGRLDTKTGKYVFGYAKHLHDALKNATFLGFTGTPIALEDRDTREVFGDYVSI  486
             HR+QYG +++ D K     +GYAK L+DAL NATF+GFTGTP+A  D++T+ VFG+Y+ +
Sbjct  414   HRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDV  473

Query  487   YDIQDAVDDGATVPIFYESRLAKLDVNQA-EIDTLNeqveevvedeedivSREKTKGEWA  545
             YD+ +AV DG+TV I+YESR+  L++ Q+ ++D       + + ++++   +++ K+ W+
Sbjct  474   YDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDE----AYNDITEDQEEDVKQRLKSKWS  529

Query  546   ALEKLVGSEPRLQQVARDLIEHFEARVSVADGKAMIVCMSRDICAHLYNAIVSLRPDWHS  605
              +E L G+ PR++ +A+D+I+HFE+R     GK+MIV MSR I  +LY+ I+ L+P+WHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  606   DDPEQGAIKIVMTGSAADKALLQPHLYSKQVKKRLETRFKDVKDPLKLVIVRDMWLTGFD  665
             DD ++G IK+VMTGS++D + +Q H+ +K+ ++ LE R KDV D L+LVIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFD  649

Query  666   APCCHTMYIDKPMKGHNLMQAIARVNRVFKNKPGGLVVDYIGIANELKAALKTYTDAKGK  725
              P  HTMYIDKPMKGHNLMQAIARVNRVFK+KPGGL+VDY+GIA+ LK ALK YT++ ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  726   GDPTHNSAEALAVLLEKMDIVRGMMHGFDYSAFETQPLE----LLVPVSNHILGL-KDGK  780
             ++ + ++  A+ ++L K D++++M+  +DYS F+++        +    + ++GL  D +
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDER  768

Query  781   TRFLDTMLAVTKAFSLCGTLDEAAPLRKEIAFFSAIKAAITKFTTVDK----KRSDAEKN  836
              RF+ T+  + KAF+LC+T   A  L  EIAFF A+KA++ K+    K    +++ AE +
Sbjct  769   QRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVE  828

Query  837   SALKQILDNAITSDGVDDIFALAGLDKPNIGLLSDEFLEDVRQMESRNLAVELLEKLLRD  896
             + ++Q++ +++ +++V D++   GL++P++++LSD+FL DV  +  +N+AVELL++LL++
Sbjct  829   AEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKG  888

Query  897   EVKARARNNVVQEKKYGDRLLETLRRYHNRAIETAQVIEELIQMAKEFKAALEREAALGL  956
             +VK+  + N    K++++ L +++ +Y++R+IET++VIEELIQ+AK++K   +R   LGL
Sbjct  889   QVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGL  948

Query  957   SHDEIAFYDALANNESAVRELGDETLKKIAAELTEKLRASTTIDWQVRESVRAKLRILVR  1016
             + DEIAFYDALA++E+A   +GD  L+ IA ELT  ++ +  +DW  R+S +AK+R+ VR
Sbjct  949   NSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVR  1008

Query  1017  RCLQRWKYPPDQQSDAVELVLKQAESLSNE  1046
             R L++  YPPD Q  AVE V+ QAE ++N+
Sbjct  1009  RLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

126) Nwat_1306 in NC_014315


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  763 bits (2888),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 461/1066 (44%), Positives = 743/1066 (70%), Gaps = 51/1066 (4%)

Query  2     TEEQLEQQCLQWFAEGGWEIAHGPDLAPDGEAPERADYRQVLLLADLEAAIKRINPHLSQ  61
              E++LEQ  L+W+   G +   G +++  + +PER   ++V+L   LE A+++IN+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    SAVEQAIAVVRKPESLDVVISNRVFHRLLLNGVPVE-YKHDDKLVHDRALLVDFRDLTAN  120
               +E+A+  +    S +++ +N  FH  L+NG+ +E Y ++++ + +   ++DF     N
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  121   RFRAINQFTLAGSRQLRRPDVICFINGLPLAVLELKSPGAENANIWDAYHQIQTYKDEIP  180
              F A+NQ+T+  +   +RPD++ FINGLP+ V+ELK++  E   + D+YHQ++TYK  IP
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DLFAYNEAAIISDGYGARVGSLTASQERYMPWRTIK-HEDDKPLLEWQLETMVRGFFDRE  239
             +LF++NE  + SDG  ++ GSLTA+ +R+M WR+   + +  P L   L+ +++G ++ E
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLA-SLDVLIHGMLNPE  244

Query  240   LFLDYLRYFVIFEADSDKLIKKI-AGYHQFHGVREAVKATVIAAQAPEQGYWAKEKRATY  298
              +LD +RYFV+F+ D+   I KI A+YHQ+ +V  AV  +++A+    +G          
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDG----------  294

Query  299   GDEVQPGSKKAGVVWHTQGSGKSLSMCCYAGKLLQQPGMNNPTLMVVTDRNDLDGQLFAT  358
                      K+GV+WHTQGSGKSL+M  ++GKL+Q   +NNPTL+VVTDRNDLD QL++T
Sbjct  295   ---------KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYST  343

Query  359   F-----SAARELLKQEPVQADDRDTLRRLLSERESGGIIFTTVQKFALLNDETGHPVLND  413
             F      +++ LL+Q P QA+ R  L+ LLS  ESGGI+FTT+QKF   ++ET  + L +
Sbjct  344   FVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTE  402

Query  414   RHNIVVISDEAHRSQYGLKATLK-RDGSYTFGYARHLRDALPNASFIGFTGTPIEREDRD  472
             R N++V++DEAHR+QYG++A    ++ +  +GYA+ LRDALPNA+F+GFTGTP+   D++
Sbjct  403   RKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKN  462

Query  473   TRAVFGDYVSIYDIQDAVDDGATVPIFYESRLAKLDLNRDLIGELSeqveemveddedvG  532
             T+ VFG+Y+ +YD+ +AV DG+TV I+YESR+  L+L + L  +L E  +++ ED+E+ +
Sbjct  463   TQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEE-D  519

Query  533   SREKTKGEWSRLEKLVGAGPRLKQVAEDLVSHFETRSRTLSGKAMIVAMSREICVHLYNE  592
              +++ K+ WSR+E L GA PR+  +A D++ HFETR +++ GK+MIV+MSR I V+LY+E
Sbjct  520   VKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDE  579

Query  593   IVALRPAWHDDDPEKGAIKVVMTGSASDRALLQPHIYNKQTKKRFEKRFKDSNDSLKLVI  652
             I+ L+P WH DD +KG IKVVMTGS+SD + +Q HI  K+ ++ +EKR KD +D L+LVI
Sbjct  580   IIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVI  639

Query  653   VRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQA  712
             VRDMWLTGFD P  HTMY+DKPMKGHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+A
Sbjct  640   VRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEA  699

Query  713   LKTYTDAKGKGSPTHSAEEAYAILLEKLAIIHGLFAPGPQGQGFNYNGFETGPHK----L  768
             LK YT++ +++  +  ++ A  ++L K  +I++++        ++Y+ F+++        
Sbjct  700   LKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLY------NLDYSKFNSDKKSERYYT  752

Query  769   LVPTANYVLSL-EDGKKRFLDTVLAMNKAFSLCATLDEAQALQKEVAFWSQVKIAITKFT  827
             +  T +YV++L ED ++RF+ TV  + KAF+LCAT   AQ L+ E+AF   VK ++ K+ 
Sbjct  753   ISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLL  812

Query  828   SVDK----KLTEEDKNTALKQILDNALVAEGVTDVFALCGLDRPNIGLLSDEFLEDVRQM  883
                K    + T  + ++ ++Q++ +++V+E+V DV+   GL++P++++LSD+FL DV  +
Sbjct  813   QPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGL  872

Query  884   PYKNFAVELLEKLLKDNIKARTRSNVVQEKKYADRLQATLRQYNNRGIETAQVMEELIAM  943
               KN AVELL++LLK+++K+  ++N    K++++ L  ++ +YN+R+IET++V+EELI +
Sbjct  873   KQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQL  932

Query  944   AKQFQAELERDEALGLNLDEVAFYDALANNESAVRELGDETLKKIAVEITDKLRKSTTVD  1003
             AK+++ E +R++ LGLN DE+AFYDALA++E+A   +GD  L+ IA E+T  ++ +  VD
Sbjct  933   AKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVD  992

Query  1004  WQVRESVRAKLRILVRRTLQRYQYPPDKAPEAVELILQQAEVLSDE  1049
             W  R+S +AK+R+ VRR L++Y YPPD    AVE +++QAE+++++
Sbjct  993   WSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

127) hsdR3 in NC_022362


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  760 bits (2877),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I+++IDF+ + NN+F+A NQL+I ++  +K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   ++     +  LI+GMLNP TLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+     L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETTMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++++
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNL  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM+++DDEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SDKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY ALA ++     +G+  L
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKEL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+++DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A++
Sbjct  1035  MANN  1038

128) hsdR3 in NC_022352


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  760 bits (2877),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I+++IDF+ + NN+F+A NQL+I ++  +K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   ++     +  LI+GMLNP TLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+     L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETTMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++++
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNL  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM+++DDEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SDKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY ALA ++     +G+  L
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKEL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+++DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A++
Sbjct  1035  MANN  1038

129) hsdR3 in NC_022351


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  760 bits (2877),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I+++IDF+ + NN+F+A NQL+I ++  +K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   ++     +  LI+GMLNP TLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+     L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETTMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++++
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNL  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM+++DDEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SDKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY ALA ++     +G+  L
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKEL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+++DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A++
Sbjct  1035  MANN  1038

130) hsdR3 in NC_022353


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  760 bits (2877),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I+++IDF+ + NN+F+A NQL+I ++  +K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   ++     +  LI+GMLNP TLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+     L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETTMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++++
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNL  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM+++DDEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SDKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY ALA ++     +G+  L
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKEL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+++DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A++
Sbjct  1035  MANN  1038

131) CJJ81176_1534 in NC_008787


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  760 bits (2877),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I+++IDF+ + NN+F+A NQL+I ++  +K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   ++     +  LI+GMLNP TLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+     L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETTMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++++
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNL  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM+++DDEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SDKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY ALA ++     +G+  L
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKEL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+++DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A++
Sbjct  1035  MANN  1038

132) hsdR in NC_017279


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  760 bits (2877),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I+++IDF+ + NN+F+A NQL+I ++  +K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   ++     +  LI+GMLNP TLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+     L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETTMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++++
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNL  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM+++DDEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SDKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY ALA ++     +G+  L
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKEL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+++DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A++
Sbjct  1035  MANN  1038

133) hsdR in NC_002163


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  760 bits (2877),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I+++IDF+ + NN+F+A NQL+I ++  +K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   ++     +  LI+GMLNP TLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+     L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETTMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++++
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNL  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM+++DDEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SDKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY ALA ++     +G+  L
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKEL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+++DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A++
Sbjct  1035  MANN  1038

134) hsdR in NC_018521


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  760 bits (2877),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I+++IDF+ + NN+F+A NQL+I ++  +K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   ++     +  LI+GMLNP TLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+     L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETTMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++++
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNL  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM+++DDEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SDKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY ALA ++     +G+  L
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKEL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+++DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A++
Sbjct  1035  MANN  1038

135) A911_07460 in NC_018709


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  760 bits (2877),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I+++IDF+ + NN+F+A NQL+I ++  +K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   ++     +  LI+GMLNP TLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+     L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETTMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++++
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNL  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM+++DDEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SDKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY ALA ++     +G+  L
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKEL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+++DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A++
Sbjct  1035  MANN  1038

136) CYCME_0985 in NC_021917


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  758 bits (2868),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 483/1074 (45%), Positives = 752/1074 (71%), Gaps = 59/1074 (5%)

Query  3     NEQTLEENCLAWFEQGGWEVFNGADIAPDSPYPQRDDFSQVVLNGQLRTAFERINTHIPE  62
             NE+ LE+  L W++  G +  +G +I+  S  P+R    +VVL+ +L  A+ +IN++I  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    QQIEHCFDQFKAIVLKPESLDLITNNRAFHRLLLEGVPVEYKKDDGESSTDGETVSDHAF  122
             + IE  +++   + L   + +L+ NN +FH  L++G+ +E      +   +G+++ +   
Sbjct  66    RFIEKALHE---LTLEKSP-NLLENNLTFHENLINGIEIE------DYDDEGQSIVEIVK  115

Query  123   IIDFDNLNNNTFSVVNQFTITGTKQPRRPDVICFINGLPIAVLELKSPSDENADIWDAFN  182
             IIDF+  +NN F  VNQ+TI      +RPD++ FINGLPI V+ELK++++E  ++ D+++
Sbjct  116   IIDFEYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYH  175

Query  183   QLQTYKDEVSDLFIFNEALVVSDGYTARVGSLTANQERFMPWRTIKSENDK-PLLEWQLE  241
             QL+TYK  +++LF FNE LV SDG  ++ GSLTAN +RFM WR+  ++ +  P L   L+
Sbjct  176   QLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLA-SLD  234

Query  242   TMVRGFFDRELLLDYIRFFVLFETDG-EQIIKKIAGYHQFHAVREAVKATVIAAQQIDGV  300
              +++G ++ E LLD IR+FVLF+ DG  +I K +A+YHQ+ AV  AV  +++A+ +    
Sbjct  235   VLIHGMLNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSE----  290

Query  301   TEKRATYADEVVPGSKKAGVVWHTQGSGKSISMCCYAGMLLQQKAMNNPTLIVVTDRNDL  360
                          G  K+GV+WHTQGSGKS++M  ++G L+Q   +NNPTL+VVTDRNDL
Sbjct  291   ------------QGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDL  336

Query  361   DGQLYATFCN-----AVELLKQTPVQASDRDALRQLLAERESGGIIFTTVQKFALLDDEK  415
             D QLY+TF +     +  LL+QTP QA  R  L+ LL+  ESGGI+FTT+QKF   ++E 
Sbjct  337   DNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNET  395

Query  416   HHPILNDRHNIVVISDEAHRSQYGLKATLSADGQ-YKFGYAKHMRDALPSASFIGFTGTP  474
               + L +R N++V++DEAHR+QYG++A     G+  K+GYAK +RDALP+A+F+GFTGTP
Sbjct  396   TMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTP  455

Query  475   ISQEDKDTRAVFGGYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHA-EIAELSdqvdev  533
             ++  DK+T+ VFG Y+ +YD+ +AV DG+TV IYYESR+  L+L ++ ++ E      + 
Sbjct  456   VASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDE----AYND  511

Query  534   vedeedvSNREKTKGEWSRLEKLVGATPRLSQVAADLIEHFETRNATMDGKAMIVAMSRD  593
             + ++++   +++ K+ WSR+E L GA PR+  +A D+I+HFETR+ +M GK+MIV+MSR 
Sbjct  512   ITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRR  571

Query  594   ICAHLYNEIIALRPEWHSDDPEKGAIKIVMTGSASDKPLLQPHIYNkktkkrlekrfkDL  653
             I  +LY+EII L+PEWHSDD +KG IK+VMTGS+SD   +Q HI  KK ++ LEKR KD+
Sbjct  572   IAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDV  631

Query  654   NDPLKLVIVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKNKPGGLVVDYIG  713
             +D L+LVIVRDMWLTGFD P  HTMY+DKPMKGHNLMQAIARVNRVFK+KPGGL+VDY+G
Sbjct  632   DDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVG  691

Query  714   IANELKQALKTYTDSKGKGEPTLNAEEAFSILLEKIDAIRGMFGKTPKSDGLDISGYESQ  773
             IA+ LK+ALK YT+S ++++ +++++ A  ++L K D I++M+        LD S ++S+
Sbjct  692   IAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDML------YNLDYSKFNSD  744

Query  774   AHK----LLVPAANYVLGL-EDGKKRFLDLVLAATKSYSLCSTLDEAKELRKEIAFYSAI  828
                     +  + +YV+GL ED ++RF+  V    K+++LC+T   A+EL  EIAF+ A+
Sbjct  745   KKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAV  804

Query  829   KAAISKFTSVDR----KRTQEEKNSALKQILDNAVIAEGVADVFALCGLDKPNIGLLSDE  884
             KA++ K+    +    ++T  E ++ ++Q++ ++V++E+V DV+   GL++P++++LSD+
Sbjct  805   KAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDD  864

Query  885   FLEDVRQMPERNLAVellekllkddIKAKTRNNVVQEKKYADRLQETLRKYNNRAIETAQ  944
             FL DV  + ++N+AVELL++LLK+++K+  + N    K++++ L +++ KYN+R+IET++
Sbjct  865   FLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSK  924

Query  945   VIEELIQMAKEFQEEMMREAELGLNPDEIAFYDALANNESAVRELGDEILKKIAVEITDK  1004
             VIEELIQ+AK++++E  R  ELGLN+DEIAFYDALA++E+A   +GD  L+ IA E+T  
Sbjct  925   VIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKT  984

Query  1005  LRKSTTVDWQVRDSVRAKLKILVRRTLQRYKYPPDKAAEAVELVLKQAESLSNS  1058
             ++ +  VDW  RDS +AK+++ VRR L++Y YPPD    AVE V+ QAE ++N+
Sbjct  985   VKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

137) BN4_12249 in NC_020409


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  756 bits (2860),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 472/1052 (45%), Positives = 739/1052 (71%), Gaps = 35/1052 (3%)

Query  11    NEDALEKLAISWFEDEGYTNVHGPDLNPEVDGSGARARLDDVLLLNPLRAAIERINPQLP  70
             NED LE++A+ W++  GY    G +++     +  R    DV+L + L  A+ +IN+++ 
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISM-TSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  71    ASTVDEVLHLVQKLSHPITVKANQEFHRLLREGVDV-SYKRDGENVEDRAFLIDFHDVNA  129
             +  ++  LH +     P  +  N  FH  L +G+++  Y  +G+++ +   +IDF+  + 
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  130   NTFWIVDQLTIRGSKGNRRPDLIVYLNGLPLAVIELKSPVKEDVGVDEAFHQLQTYKQEL  189
             N F  V+QLTI  +  ++RPD+++++NGLP+ VIELK++ +E VGV++++HQL+TYK  +
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  190   VDLAMFNEALVASDGIQARVGSLTANREWFLPWRAVKSEEDRPSFEYELKGIVKGFFDRT  249
              +L  FNE LV+SDGI+++ GSLTAN ++F+ WR+  ++ + ++    L  ++ G ++  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  250   LLLEYIRDFVLFEADDSSTIKKI-ASYHQFHGVRQavaaavkaaSEHAPNELKGRGGVIW  308
              LL+ IR FVLF+ D+ + I KI A+YHQ+ +V +AV  A+ A+SE++     G+GGVIW
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQG----DGKGGVIW  300

Query  309   HTQGSGKSISMCCLAGKLIRHPDLANPTLVVITDRNDLDGQLYETFCK-----AGDLLAD  363
             HTQGSGKS++M  ++GKLI+   L NPTLVV+TDRNDLD QLY TF K     + +LL +
Sbjct  301   HTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  364   SPIQADDRGELRQILNEKQSGGIVFTTIQKFSLDKDETKFPVLSDRRNIIVIADECHRSQ  423
             +P QA+ R EL+ +L+  +SGGIVFTT+QKF  +++ET  + L++R+N+IV+ADE HR+Q
Sbjct  359   TPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQ  417

Query  424   YGFKGKLDEKRNAFVAGYAQHMRDALPNATFTGFTGTPISQEDKNTQAVFGEYVSIYDIE  483
             YGF++K D+K +++  GYA+ +RDALPNATF GFTGTP++  DKNTQ VFG+Y+ +YD+ 
Sbjct  418   YGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  484   QAQLDGATVPIFYESRLAKLDLNQDELPQIdekvdevtedeetSQAEKTKGKWAALAKLV  543
             QA  DG+TV I+YESR+  L+L Q    ++DE  +++TED+E    ++ K+KW+ +  L 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALA  535

Query  544   GAEPRIRQVAEDLVDHFEARLEVVDGKAMIVCMSRDICVAMFDALVKLRPQWAGNQLADG  603
             GA PR+  +A D+++HFE+R + + GK+MIV MSR I V ++D +++L+P+W ++     
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSD-----  590

Query  604   TYDPSDGAIRIIMTASASDRRELQNHHYSKTQKKALEKRFKDLDDPLKIVIVRDMWLTGF  663
               D   G I+++MT+S+SD   +Q H  +K +++ LEKR KD+DD L++VIVRDMWLTGF
Sbjct  591   --DDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGF  648

Query  664   DAPCAHTMYIDKPMKGHNLMQAIARVNRVFKGKQGGLVVDYIGIASELKNALHTYTRSGG  723
             D P  HTMYIDKPMKGHNLMQAIARVNRVFK+K GGL+VDY+GIA  LK+AL  YT S+ 
Sbjct  649   DVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQ  708

Query  724   RGGQPTIDVYEAFYVLKEKLQTARDIFHKFDYSAYKT-KAVE---LLPPAADFVVA-TEE  778
               +Q +ID   A  ++  K +  +D++ ++DYS +++ K  E    ++ + D+V++  E+
Sbjct  709   --AQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGED  766

Query  779   RKKEFFDVVVAMTRAQSLCGTLDEAVAIRDEITFFQAVKI----FIDKTTATKGKQTRQE  834
              ++ F+  V  + +A +LC+T   A  + DEI+FF+AVK     +++     K ++T  E
Sbjct  767   ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAE  826

Query  835   KDAILNQLLARAVVPEGVDDIFALAGLDKPDISILSEEFLDDVRNMEHRNLAVELLEKLL  894
              +A +NQL++++VV E+V D++   GL++PD+SILS++FL DV  + ++N+AVELL++LL
Sbjct  827   VEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLL  886

Query  895   RDEISARSRRNTTQERKFSERLKESLLKYRNRAIETAQVIEELIQMAKDLNEALKRGDKL  954
             ++++ +  + N+T  ++FSE L +S+ KY +R+IET++VIEELIQ+AKD+++  +RG+ L
Sbjct  887   KGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNEL  946

Query  955   GLNPSELAFYDALEENESAVRELGDDVLKKIAKELTEKLRKNVTVDWQHKDSVRAKMRNL  1014
             GLN+ E+AFYDAL  +E+A   +GD  L+ IA ELT  ++ N+ VDW  +DS +AKMR  
Sbjct  947   GLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVA  1006

Query  1015  VRRILKKYKYPPDAQKEAVAEVLRQAESLADD  1046
             VRR+LKKY YPPD QK AV +V+ QAE +A++
Sbjct  1007  VRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

138) Calow_2045 in NC_014657


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  752 bits (2846),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 469/1052 (45%), Positives = 736/1052 (70%), Gaps = 60/1052 (5%)

Query  8     ESVVEQAAIKWFKDIGYEYLHGSKIPIE----DREDYREVILKNRLYKALIRLNPELPLE  63
             E  +EQ A+ W++ +GY+Y  G+ I++     +R   ++V+L +RL KAL ++N+++   
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  64    CIEEAVRQLKNLQYPRIELNNREIHKIYRNGAKVTRRNSEGEEVGEIVKIFDYENPKNND  123
              IE A+++L   + P +  NN  +H    NG  +   + EG+ + EIVKI+D+E P+NND
Sbjct  67    FIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNND  126

Query  124   FLVCNQVKI-KGAGVRIPDIVVYINGLPVGLFELKNPLDEAATIEGAYRQLELYKRDIPD  182
             FL  NQ+ I +G   + PDIV++INGLP+ ++ELKN+ +E+  +E++Y+QLE YK  IP+
Sbjct  127   FLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  183   IFAYNEICVVSDGNKAKAGTLTAPWERFSAWKSIDG-VSSVEGMPELEVLIKGMFDKRRV  241
             +F++NE+ V SDG ++KAG+LTA  +RF +W+S DG   S  G++ L+VLI GM++   +
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETL  246

Query  242   LDIIRNFITF-STVKDEVIKIMAMYHQYYGVNKAVEETIRATSPGGDRRIGTFWHTQGSG  300
             LD+IR F+ F    K+++ KI+A YHQYY+VNKAV+ ++ A+S  GD + G +WHTQGSG
Sbjct  247   LDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSG  306

Query  301   KSLSMVFYTGKIIELKELQNPTIVVITDRNDLDDQLYETFCNASD------LIPYPKQAE  354
             KSL+MVF++GK+I++  L+NPT+VV+TDRNDLD+QLY TF ++ +      L   PKQAE
Sbjct  307   KSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAE  364

Query  355   SVEDLKEKLSQVAAGGIFFTTIQKFQAEAEEVSEVVDPklkkalkkgkTYPLLSDRSNII  414
             +  +LK  LS V +GGI FTT+QKF++E +E +                   L++R N+I
Sbjct  365   TRKELKSLLS-VESGGIVFTTMQKFEPEQNETTMAA----------------LTERKNVI  407

Query  415   VIVDEAHRSHYEFID-----------GFAKYIRQALPNASFIGFTGTPIDLEDRSTLQVF  463
             V+ DEAHR++Y F             G+AKY+R+ALPNA+F+GFTGTP+   D++T  VF
Sbjct  408   VMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVF  467

Query  464   GDYISIYDMKQAVEDKAIVPIYYEGRLVKLHLINE-DIDRDFeevtegeeeevKNKLKTK  522
             G+YI +YDM QAV D + V IYYE+R++ L+L +  D+D  ++++TE++EE+VK++LK+K
Sbjct  468   GNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSK  527

Query  523   WAALEALVGTKERIETIARDIVEHFEERCKVLEGKGMIVCMSRRICVDLYNEIIKLRPHW  582
             W+ +EAL G+K R+E++A+DI++HFE R + + GKGMIV MSRRI VDLY+EII+L+P+W
Sbjct  528   WSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEW  587

Query  583   HSDDLDKGVIKIVMSGNPSKDPKDFLPHLYTKLQIKEIEKRMKDPNDPLKLVIVRDMWLT  642
             HSDD DKGVIK+VM+G++S DP  F  H+  K + + +EKRMKD +D L+LVIVRDMWLT
Sbjct  588   HSDDDDKGVIKVVMTGSSS-DPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLT  646

Query  643   GFDVPCLHTMYIDKPMRGHNLMQAIARVNRVFKDKPAGLVVDYIGIADDLKLALANYTRS  702
             GFDVP +HTMYIDKPM+GHNLMQAIARVNRVFKDKP+GL+VDY+GIA+ LK AL +YT  
Sbjct  647   GFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT-E  705

Query  703   TGKEAATLPIDEAIRIMQEKYDIVCSYFHGIDFSGWEEKSAEDKLSLLKQAMD-LINKDE  761
             +++  +++  D A+ +M  KYD++   +  +D+S  +     ++   + ++MD +I  +E
Sbjct  706   SDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGE  765

Query  762   TTKKNFLDQCMALCKAFALVIPREEAMRIRSDVAFFQAVRSNIVK-YTPPKG----LSIE  816
               ++ F+     L KAFAL      A  +  ++AFF+AV++ +VK   PPK      +  
Sbjct  766   DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPA  825

Query  817   ELDSAIKQIISEGVAASDKPIDIFDAAGLKKPDLSILSEEFLNKLIGHENKNLQIEVLRK  876
             E+++ I+Q++S++V + D  ID++++ GL +PDLSILS++FL+ + G  +KN+ +E+L +
Sbjct  826   EVEAEINQLVSQSVVTED-VIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNR  884

Query  877   LLNDEIKAKIRKNHVKYASFKEMIEKVLNKYHNRAITSAEVIKHLIDLAKEMQNMDKRAK  936
             LL++++K+ ++ N      F EM+ + +NKY++R+I ++ VI +LI+LAK++++ ++R++
Sbjct  885   LLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGN  944

Query  937   EMNLTEEEMAFYDIVCQGEEA--ILNDEEAKEIARELVRIIKSKTEGQVDWTIKENIKAS  994
             E+ L  +E+AFYD +   E A   + D E + IA+EL + +K +    VDW+ +++ KA 
Sbjct  945   ELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMG--VDWSKRDSAKAK  1002

Query  995   IRATVKRLLRRKGFKDPQKLDNV-VKLVIEQA  1025
             +R +V+RLL++ G+  P  L+++ V  V+EQA
Sbjct  1003  MRVAVRRLLKKYGY--PPDLQKMAVEQVVEQA  1032

139) Noc_1804 in NC_007484


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  752 bits (2847),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 469/1081 (44%), Positives = 746/1081 (70%), Gaps = 70/1081 (6%)

Query  2     TEEQLEQQCLAWFAEGGWELAHGSD-----LAPGRADYRQVWLLADLEAAIRRINPHLPE  56
              E++LEQ  L W+   G +   G++     L+P R   ++V L   LE A+R+IN+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  57    SCIEQVVAVVGKPESLDTVVSNRAFHRLLLEGVPVE-YKTLSSLSPWERAGVREREEKIV  115
               IE+ +  +    S + + +N +FH  L++G+ +E Y               + E + +
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDY---------------DDEGQSI  110

Query  116   HDRALLIDFDDLNANRFRAINQFTLLGSKQLRRPDIICFINGLPLAVLELKSPHAENVDI  175
              +   +IDF+  + N F A+NQ+T++ +   +RPDI+ FINGLP+ V+ELK++  E V++
Sbjct  111   VEIVKIIDFEYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGV  170

Query  176   WDAFHQLQTYKDEIPELFVFNEALVISDGYHARVGSLTANQERFMPWRTLK-HEDDKPLL  234
              D++HQL+TYK  IP+LF FNE LV SDG +++ GSLTAN +RFM WR+   + +  P L
Sbjct  171   EDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL  230

Query  235   DWQLETLVRGFFDRELFLDYLRYFVIFETDS-GRLSKKIAGYHQFHAVREAVKATVIAAQ  293
                L+ L++G ++ E +LD +RYFV+F+ D+ G++SK +A+YHQ+ AV  AV  +++A+ 
Sbjct  231   A-SLDVLIHGMLNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASS  289

Query  294   EPRQRWAGEKRATYADDLVPGSKKAGVVWHTQGSGKSLSMCCYAGKLLQQPEMNNPTLMV  353
             E                   G  K+GV+WHTQGSGKSL+M  ++GKL+Q   +NNPTL+V
Sbjct  290   EQ------------------GDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVV  329

Query  354   VTDRNDLDGQLFATF-----SAAKELLKQEPVQAEDRDTLRRLLAERASGGIIFTTVQKF  408
             VTDRNDLD QL++TF      ++K LL+Q P QAE R  L+ LL+   SGGI+FTT+QKF
Sbjct  330   VTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKF  388

Query  409   ALLDGENDHPILNDRHNIVVISDEAHRSQYGLKATLKKDGR-YTFGYAKHMRDALPNASF  467
                + E   + L +R N++V++DEAHR+QYG++A     G    +GYAK +RDALPNA+F
Sbjct  389   EPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATF  448

Query  468   IGFTGTPIANEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDINRELIEKLS  527
             +GFTGTP+A+ DK+T+ VFG+Y+ +YD+ +AV DG+TV IYYESR+  L++ + L   L 
Sbjct  449   VGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSL--DLD  506

Query  528   dqveavvedeedLGQREKTKGEWSRLEKLVGSGPRLKQVAADLVRHFEIRSQSMDGKAMI  587
             +  + + ED+E+ + +++ K+ WSR+E L G+ PR+  +A D+++HFE R Q+M GK+MI
Sbjct  507   EAYNDITEDQEE-DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMI  565

Query  588   VAMSREICVHLYNEIVALRPDWHDPDPEKGAIKIVMTGSASDRPLLQPHLYNQQTKKRLE  647
             V+MSR I V+LY+EI+ L+P+WH  D +KG IK+VMTGS+SD   +Q H+  ++ ++ LE
Sbjct  566   VTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLE  625

Query  648   KRFKDIYDPLKLVIVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKNKPGGL  707
             KR KD+ D L+LVIVRDMWLTGFD P  HTMY+DKPMKGHNLMQAIARVNRVFK+KPGGL
Sbjct  626   KRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGL  685

Query  708   VVDYIGIANALKQALKTYTDAKGKGEPTHSAEEAFAVLLEKLDIIHGLFAKTPQNAGFDY  767
             +VDY+GIA++LK+ALK YT++ ++++ +  ++ A  ++L K D+I++++ +      +DY
Sbjct  686   IVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYN------LDY  738

Query  768   SSFEHEATR----LLIPTANYILSL-EGGKKRFLDTILAVNMAYSLCGTLEEARAYHKEV  822
             S F+ +        +  T +Y+++L E+ ++RF+ T+  +  A++LC+T   A+  + E+
Sbjct  739   SKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEI  798

Query  823   AFLSAVKAALTKHTRVDK----KLTQEEKNSALKQILDNALVAEGVTDVFALCGLDKPNI  878
             AF+ AVKA+L K  +  K    + T  E ++ ++Q++ +++V+E+V DV+   GL++P++
Sbjct  799   AFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDL  858

Query  879   GLLSEEFLEDVRRMPYKNFAVELLEKLLKDNIKAKTRNNVVQEKKYADRLQETLRQYNNR  938
             ++LS++FL DV  +  KN AVELL++LLK+++K+  + N    K++++ L +++ +YN+R
Sbjct  859   SILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSR  918

Query  939   GIETAQVIEELIAMAKQFQAELERDEALGLNPDEVAFYDALANNESAVRELGDETLKKIA  998
             +IET++VIEELI +AK+++ E +R++ LGLN+DE+AFYDALA++E+A   +GD  L+ IA
Sbjct  919   SIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIA  978

Query  999   VEITDKLRRSTTVDWQVRESIRAKLRILVRRTLQRYKYPPDKAPEAVELILQQAEVLSDE  1058
              E+T  ++ +  VDW  R+S +AK+R+ VRR L++Y YPPD    AVE +++QAE+++++
Sbjct  979   HELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

Query  1059  K  1059
             +
Sbjct  1039  Q  1039

140) Tmath_1861 in NC_014209


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  751 bits (2843),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 466/1052 (45%), Positives = 737/1052 (71%), Gaps = 60/1052 (5%)

Query  8     ESVVEQAAIKWFKDIGYEYLHGNEIPVE----DRKDYREVILKNRLYKALIRLNPELPLE  63
             E  +EQ A+ W++ +GY+Y  GNEI++     +RK  ++V+L +RL KAL ++N+++   
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  64    CIEEAVRQLKNLQYPRIELNNREIHKVYRNGAKVTRRNSEGEEVGEIVKIFDYENIENNE  123
              IE A+++L   + P +  NN  +H    NG  +   + EG+ + EIVKI+D+E  +NN+
Sbjct  67    FIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNND  126

Query  124   FLVCNQVKIKGAGLRI-PDIVVYINGLPVGLFELKNPLDEAATIEGAYRQLELYKRDIPD  182
             FL  NQ+ I  ++ +  PDIV++INGLP+ ++ELKN+ +E+  +E++Y+QLE YK  IP+
Sbjct  127   FLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  183   IFAYNEICVVSDGNKAKAGTITTPWERFSAWKSIDG-VSSVEGMPELEVLIKGMFDKRRV  241
             +F++NE+ V SDG ++KAG++T+  +RF +W+S DG   S  G++ L+VLI GM++   +
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETL  246

Query  242   LDIIRNFITF-STAKDEVIKIMAMYHQYYGVNKAVEETIRATSPGGDRRIGTFWHTQGSG  300
             LD+IR F+ F   +K+++ KI+A YHQYY+VNKAV+ ++ A+S  GD + G +WHTQGSG
Sbjct  247   LDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSG  306

Query  301   KSLSMVFYTGKIIELKELQNPTIVVITDRNDLDDQLYETFCNASD------LIPYPKQAE  354
             KSL+MVF++GK+I++  L+NPT+VV+TDRNDLD+QLY TF ++ +      L   PKQAE
Sbjct  307   KSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAE  364

Query  355   SVGDLKEKLSQIAAGGIFFTTIQKFQAEAEEVSEVVDPklkkalkkgkTYPLLSDRSNII  414
             +  +LK  LS + +GGI FTT+QKF++E +E +                   L++R N+I
Sbjct  365   TRKELKSLLS-VESGGIVFTTMQKFEPEQNETTMAA----------------LTERKNVI  407

Query  415   VIVDEAHRSHYEFID-----------GFAKYIRQALPNASFIGFTGTPIDLEDRSTLQVF  463
             V+ DEAHR++Y F             G+AKY+R+ALPNA+F+GFTGTP+   D++T  VF
Sbjct  408   VMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVF  467

Query  464   GNYISIYDMKQAVEDKAIVPIYYEGRLVKLHLINE-NIDRDFeevtegeeeevKNKLKTK  522
             GNYI +YDM QAV D + V IYYE+R++ L+L +  ++D  ++++TE++EE+VK++LK+K
Sbjct  468   GNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSK  527

Query  523   WAALEALVGTKERLETIARDIVEHFEERCKVLEGKGMIVCMSRRICVDLYNEIIKLRPHW  582
             W+ +EAL G+K R+E++A+DI++HFE R + + GKGMIV MSRRI VDLY+EII+L+P+W
Sbjct  528   WSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEW  587

Query  583   HSDDLDKGVIKIVMSGNASKDPKEFLTHLYTKSQIKEIEKRMKDPNDPLKLVIVRDMWLT  642
             HSDD DKGVIK+VM+G++S DP  F  H+  K + + +EKRMKD +D L+LVIVRDMWLT
Sbjct  588   HSDDDDKGVIKVVMTGSSS-DPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLT  646

Query  643   GFDVPCLHTMYIDKPMRGHNLMQAIARVNRVFKDKPAGLVVDYIGIADDLKLALANYTRS  702
             GFDVP +HTMYIDKPM+GHNLMQAIARVNRVFKDKP+GL+VDY+GIA+ LK AL +YT  
Sbjct  647   GFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT-E  705

Query  703   TGKEAATLPIDEAIRIMQEKYDIVCSYFHGIDFSGWEEKSAEDKLSLLKQAMD-LINKDE  761
             +++  +++  D A+ +M  KYD++   +  +D+S  +     ++   + ++MD +I  +E
Sbjct  706   SDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGE  765

Query  762   TTKKNFLDQCMALCKAFALVVPREEAMRIRSDVAFFQAVRSNIVK-YTPPKG----LSIE  816
               ++ F+     L KAFAL      A  +  ++AFF+AV++ +VK   PPK      +  
Sbjct  766   DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPA  825

Query  817   ELDSAIKQIISEGVAASDKPIDIFDAAGLKKPDLSILSEEFLNKLMGHENKNLQIEVLRK  876
             E+++ I+Q++S++V + D  ID++++ GL +PDLSILS++FL+ + G  +KN+ +E+L +
Sbjct  826   EVEAEINQLVSQSVVTED-VIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNR  884

Query  877   LLNDEIKAKIRKNHVKYASFKEMIERVLNKYHNRAITSAEVIKHLIDLAKEMQNMDKRAK  936
             LL++++K+ ++ N      F EM+   +NKY++R+I ++ VI +LI+LAK++++ ++R++
Sbjct  885   LLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGN  944

Query  937   EMNLTEEEMAFYDIVCQGEEA--ILNDEEAKEIARELVRIIKSKTEGQVDWTIKENIKAS  994
             E+ L  +E+AFYD +   E A   + D E + IA+EL + +K +    VDW+ +++ KA 
Sbjct  945   ELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMG--VDWSKRDSAKAK  1002

Query  995   IRATVKRLLRRKGFKDPQKLDNV-VKLVIEQA  1025
             +R +V+RLL++ G+  P  L+++ V  V+EQA
Sbjct  1003  MRVAVRRLLKKYGY--PPDLQKMAVEQVVEQA  1032

141) Maqu_3386 in NC_008740


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  751 bits (2840),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 467/1067 (44%), Positives = 746/1067 (70%), Gaps = 53/1067 (4%)

Query  2     TEDQLEQQCLQWFAEGGWEIAHGPDLASDGEAPERADYRQVLLLADLEAAIQRINPHLPQ  61
              ED+LEQ  L+W+   G +   G +++  + +PER   ++V+L   LE A+++IN+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    SAVEQAVAVVRKPESLDVVISNRAFHRLLLDGVPVE-YKRDDKVVHDQAFLVDFGDLTAN  120
               +E+A+  +    S +++ +N +FH  L++G+ +E Y  +++ + +   ++DF     N
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  121   RFRAINQFTIEGSKQLRRPDVICFINGLPLAVLELKSPGAENVNIWDAYNQVQTYKDECS  180
              F A+NQ+TI  +   +RPD++ FINGLP+ V+ELK++  E V + D+Y+Q++TYK   +
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DLFAYNEAAVISDGYLARVGSLTASQERYMPWRTLR-HEDDKPLLEWQLETMVRGFFDRE  239
             +LF++NE  V SDG  ++ GSLTA+ +R+M WR+   + +  P L   L+ +++G ++ E
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLA-SLDVLIHGMLNPE  244

Query  240   LFLDYIRYFVIFETDSDKLIKKI-AGYHQFHAVCEAVKATVIAAQAPEHGHWAKEKRATY  298
              +LD IRYFV+F+ D+   I KI A+YHQ+ AV  AV  +++A+    +G          
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDG----------  294

Query  299   GDEVLPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMNNPTLIVVTDRNDLDGQLFAT  358
                      K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPTL+VVTDRNDLD QL++T
Sbjct  295   ---------KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYST  343

Query  359   F-----SAVRELLKQEPVQADDRDTLRRLLSERESGGIIFTTVQKFALLNDESGHPILND  413
             F      + + LL+Q P QA+ R  L+ LLS  ESGGI+FTT+QKF   ++E+  + L +
Sbjct  344   FVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTE  402

Query  414   RHNIVVISDEAHRSQYGLKATLK-KDGTYKFGYARHMRDALPNASFIGFTGTPIESEDKD  472
             R N++V++DEAHR+QYG++A    K+   K+GYA+ +RDALPNA+F+GFTGTP+ S DK+
Sbjct  403   RKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKN  462

Query  473   TRAVFGDYVSIYDIQDAVDDGATVPIFYESRLAKLDINRE-QIEELSdqveevveddedv  531
             T+ VFG+Y+ +YD+ +AV DG+TV I+YESR+  L++ +  +++E      + + +D++ 
Sbjct  463   TQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDE----AYNDITEDQEE  518

Query  532   GSREKTKGEWSRLEKLVGAGPRLKQVAEDLVNHFETRSSTIDGKAMIVAMSREIAVHLYN  591
             + +++ K+ WSR+E L GA PR+  +A D+++HFETR  ++ GK+MIV+MSR IAV+LY+
Sbjct  519   DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYD  578

Query  592   EIVALRPEWHDDDPEKGAIKIVMTGSASDRALLQPHIHNKQTKKRFEKRFKDINDPLRLV  651
             EI+ L+PEWH DD +KG IK+VMTGS+SD + +Q HI  K+ ++ +EKR KD++D L+LV
Sbjct  579   EIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLV  638

Query  652   IVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQ  711
             IVRDMWLTGFD P  HTMY+DKPMKGHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+
Sbjct  639   IVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKE  698

Query  712   ALKTYTDAKGKGSPTHSAEEAYAILLEKLDIIHGMFAPGPKGKGFSYSGFDTEPRK----  767
             ALK YT++ +++  +  ++ A  ++L K D+I++M+        + YS F+++ +     
Sbjct  699   ALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLY------NLDYSKFNSDKKSERYY  751

Query  768   VLLATANYVLSL-EDGKKRFLDTVLAMNKAFSLCATLDEAQTLQKEVAFLSQVKTAITKF  826
              +  T +YV++L ED ++RF+ TV  + KAF+LCAT   AQ L+ E+AF+  VK+++ K+
Sbjct  752   TISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKL  811

Query  827   TSVDK----KLTEEEKNTALRQILNNALIAEGVTDVFALCGLDKPNIGLLSDEFLEDVRQ  882
                 K    + T  E ++ + Q++++++++E+V DV+   GL++P++++LSD+FL DV  
Sbjct  812   LQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEG  871

Query  883   MPYKNFAVellekllkddIKAKTRNNVVQEKKYADRLQETLRKYNNRGIETAQVIEELIA  942
             +  KN AVELL++LLK+++K+  + N    K++++ L +++ KYN+R+IET++VIEELI 
Sbjct  872   LKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQ  931

Query  943   MAKQFQAEMERDAALGLNPDEVAFYDALASNESAVRELGDEILKKIAVEITDKLRKSTTV  1002
             +AK+++ E +R+  LGLN+DE+AFYDALAS+E+A   +GD  L+ IA E+T  ++ +  V
Sbjct  932   LAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGV  991

Query  1003  DWQVRESVRAKLRILVRRTLQRYKYPPDKAPAAIELIMEQAEALSNH  1049
             DW  R+S +AK+R+ VRR L++Y YPPD    A+E ++EQAE ++N+
Sbjct  992   DWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

142) Jden_2251 in NC_013174


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  750 bits (2838),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 461/1048 (44%), Positives = 740/1048 (71%), Gaps = 24/1048 (2%)

Query  4     FNENTVELAALEYFAELGYRTLHGPDIAPGEPGAERDSYEEVFLWGRLRDAIRRINPGTS  63
             FNE+ +E  ALE +  LGY    G +I+     +ER S  +V L  RL  A+R+IN++  
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  64    PALVDEAIKRVRRAESQSPIDENYRLHQLITEGVPVEHRDADGALRTTRLWLVDFERPEN  123
             P +++ A+  +    S + +++N  +H+ + +G+ +E+ D +G      + ++DFE P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  124   NDWVAINQFTIVENGKNRRPDvlvlvnglplallelKNPTAEHATLKSAWNQVQTYRQDI  183
             ND +A+NQ+TIV+ + ++RPD+++++NGLP+ ++ELKN+T E   +  + +Q++TY+  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  184   PSVFVPNAVTVITDGTSAAMSSYAGAFEHYAPWKTIEGREVVSDG-PALEVLIKGVFEPK  242
             P +F  N V V +DG ++  +S ++ ++++  W++ +G+   S G ++L+VLI G+++P 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  243   RFLDLLQNFIVFSDETATDKATGQPTRLLVKRVAKYHQYWAVNAAVESTVQASRPDGDRR  302
              +LDL++ F++F D+     + G+ +++L    A YHQY AVN AV+ ++ AS  +GD +
Sbjct  245   TLLDLIRYFVLFQDD-----GKGHISKIL----AAYHQYYAVNKAVDRALLASSEQGDGK  295

Query  303   GGVVWHTQGSGKSFEMVFYAAKIMRDSRMANPTLVFITDRNDLDDQLFGETFAPAR----  358
             GGV+WHTQGSGKS+ MVF+++K+++   + NPTLV +TDRNDLD+QL++ TF  ++    
Sbjct  296   GGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYS-TFVKSKGRSG  352

Query  359   --ILPETPVQATTRTDLRSKLKRASGGIVFTTLQKFAPGEDGDANPVLTDRCNVVVVADE  416
               +L +TP QA TR +L+S L   SGGIVFTT+QKF P ++  + + LT+R NV+V+ADE
Sbjct  353   KGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADE  412

Query  417   AHRSQYGFGETLDRHGR-LRAGLAKHMRDALPGATYLGFTGTPIESGDKSTRSVFGDYVD  475
             AHR+QYGF    D  G  ++ G AK +RDALP AT++GFTGTP+ S DK+T+ VFG+Y+D
Sbjct  413   AHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYID  472

Query  476   VYDLTRAVEDGATVKIFYESRlakidlsdddlaaldeladeitetveedaataaKSRWSR  535
             VYD+T+AV DG+TVKI+YESR+  ++L++              +  +       KS+WSR
Sbjct  473   VYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRL--KSKWSR  530

Query  536   LEAIVGADSRLDLIARDIVEHWEKRREALFGKGMIVTMSRRIAVRLYEKIVALRPDWHSD  595
             +EA+ GA +R++ +A+DI++H E R++A+ GKGMIVTMSRRIAV LY+ I+ L+P+WHSD
Sbjct  531   IEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSD  590

Query  596   DPAKGKIKVVMTGSAADPAEFQPHIYPKDVRKDLKLRAKNPDDELELVIVRDMWLTGFDA  655
             D  KG IKVVMTGS++DP+ FQ HI PK  R+ L  R K+ DDEL+LVIVRDMWLTGFD 
Sbjct  591   DDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDV  650

Query  656   PSMHTMYVDKTMQGAGLMQAIARVNRTFRDKPGGLIVDYIGVFANLQAALQEYSPSDRDQ  715
             PSMHTMY+DK M+G  LMQAIARVNR F+DKPGGLIVDY+G+  +L+ AL+EY+ SD+ Q
Sbjct  651   PSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ  710

Query  716   AGVPIDEMVAVMLEKHDIIRGLLHGVDYDSSPTLTASQRLAEYAKVLDFVMA-DPDRTKR  774
             +++  D  V +ML K D+I+++L  +DY    +   S+R    ++ +D+V++ + D  +R
Sbjct  711   TAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQR  770

Query  775   FNDQVlalakafalagaRDEAAAIRDDVRLFTDVRAAILK-IQNPDSGRGGSGAVEIDTA  833
             F   V  L+KAFAL ++   A  + D++ +F  V+A+++K +Q P  G+    + E+++ 
Sbjct  771   FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAE  830

Query  834   LGQLLNEAVAANQVVDIYKLAGVETPELSILSDEFLDSLADKDKPNLQMGLLRRLLNDQI  893
             + QL++++V +++V+D+Y+  G+E P+LSILSD+FL  + +  + N+ + LL RLL++Q+
Sbjct  831   INQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQV  890

Query  894   RTVQRTNLVQARKFSELLDEAINRYTNRSLTTAEIIAELVKLAKQMRDDQKRNEELGLSA  953
             +++ +TN   +++FSE+L+++IN+Y +RS+ T+ +I EL++LAK+++++Q+R +ELGL++
Sbjct  891   KSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNS  950

Query  954   AEVALYDAIAQNDAAVMHMGDETLKKIAVDLVWAVRTSVVIDWDQKESVRAAMRSKVRRL  1013
              E+A+YDA+A +++A   MGD  L+ IA +L  +V+ ++ +DW +++S +A MR  VRRL
Sbjct  951   DEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRL  1010

Query  1014  LAKYDYPPDAEKKAIELVLEQAELFARG  1041
             L KY+YPPD +K A+E V+EQAEL A  
Sbjct  1011  LKKYGYPPDLQKMAVEQVVEQAELMANN  1038

143) MARHY0349 in NC_017067


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  748 bits (2832),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 462/1065 (44%), Positives = 742/1065 (70%), Gaps = 50/1065 (4%)

Query  2     TEDQLEQQCLEWFAEGGWEIAHGPDLAPDGEAPGRADYRQVLLLADLEAAITRINPHLPQ  61
              ED+LEQ  LEW+   G +   G +++  + +P R   ++V+L   LE A+ +IN+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    SAVEQAVAVVRKPESLDVVISNRAFHRLLLDGVPVE-YKRDDKVVHDQAFLVDFGDLAAN  120
               +E+A+  +    S +++ +N +FH  L++G+ +E Y  +++ + +   ++DF     N
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  121   RFRAINQFTIEGSKQLRRPDVICFINGLPLAVLELKSPGAENVNIWNAYNQIQTYKDECS  180
              F A+NQ+TI  +   +RPD++ FINGLP+ V+ELK++  E V + ++Y+Q++TYK   +
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DLFAYNEAAIISDGYLARVGSLTATQERYMPWRTLK-HEDDKPLLEWQLETMVRGFFDRE  239
             +LF++NE  + SDG  ++ GSLTA  +R+M WR+   + +  P L   L+ +++G ++ E
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLA-SLDVLIHGMLNPE  244

Query  240   LFLDYLRYFVIFETDSDKLIKKI-AGYHQFHAVREAVKATVIAAQDISGPGISEKRATYG  298
              +LD +RYFV+F+ D+   I KI A+YHQ+ AV  AV  +++A+ +              
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSE--------------  290

Query  299   DEVLPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMNNPTLIVVTDRNDLDGQLFATF  358
                  G  K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPTL+VVTDRNDLD QL++TF
Sbjct  291   ----QGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTF  344

Query  359   -----SAARELLKQEPVQADDRDTLRRLLSERESGGIIFTTVQKFALLNDESGHPVLNDR  413
                   +++ LL+Q P QA+ R  L+ LLS  ESGGI+FTT+QKF   ++E+  + L +R
Sbjct  345   VKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTER  403

Query  414   HNIVVISDEAHRSQYGLKATLK-KDGTYKFGYARHMRDALPNASFIGFTGTPIESEDKDT  472
              N++V++DEAHR+QYG++A    K+   K+GYA+ +RDALPNA+F+GFTGTP+ S DK+T
Sbjct  404   KNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNT  463

Query  473   RAVFGDYVSIYDIQDAVDDGATVPIFYESRLAKLDINReqieelseqveevveddedvGS  532
             + VFG+Y+ +YD+ +AV DG+TV I+YESR+  L++ +    + + +     +++   + 
Sbjct  464   QMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEE---DV  520

Query  533   REKTKGEWSRLEKLVGAGPRLKQVAEDLVNHFETRSSTIDGKAMIVAMSREIAVHLYNEI  592
             +++ K+ WSR+E L GA PR+  +A D+++HFETR  ++ GK+MIV+MSR IAV+LY+EI
Sbjct  521   KQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEI  580

Query  593   AALRPEWHDDDPEKGAIKIVMTGSASDRPLLQPHIHNKQTKKRFEKRFKDINDPLKLVIV  652
               L+PEWH DD +KG IK+VMTGS+SD   +Q HI  K+ ++ +EKR KD++D L+LVIV
Sbjct  581   IRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIV  640

Query  653   RDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQAL  712
             RDMWLTGFD P  HTMY+DKPMKGHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+AL
Sbjct  641   RDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEAL  700

Query  713   KTYTDAKGKGTPTHSAEEAYAILLEKLDIIHGMFAPGPKGEGFSYSGFETE--PHKF--L  768
             K YT++ +++  +  ++ A  ++L K D+I++M+        + YS F+++  ++++  +
Sbjct  701   KEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLY------NLDYSKFNSDKKSERYYTI  753

Query  769   VPTANYVLSL-EDGKKRFLDTVLAMNKAFSLCATLDEAQALQKEVAFLSQVKTAITKFTS  827
               T +YV++L ED ++RF+ TV  + KAF+LCAT   AQ L+ E+AF+  VK+++ K+  
Sbjct  754   SNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQ  813

Query  828   VDK----KLTEEEKNTALRQILNNALIAEGVTDVFALCGLDKPNIGLLSDEFLEDVRQMP  883
               K    + T  E ++ + Q++++++++E+V DV+   GL++P++++LSD+FL DV  + 
Sbjct  814   PPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLK  873

Query  884   YKNFAVellekllkddIKAKTRNNVVQEKKYADRLQETLSKYNNRGIETAQVIEELIAMA  943
              KN AVELL++LLK+++K+  + N    K++++ L ++++KYN+R+IET++VIEELI +A
Sbjct  874   QKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLA  933

Query  944   KQFQAELERDAALGLNPDEVAFYDALASNESAVRELGDETLKKIAVEITDKLRKSTTVDW  1003
             K+++ E +R+  LGLN+DE+AFYDALAS+E+A   +GD  L+ IA E+T  ++ +  VDW
Sbjct  934   KDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDW  993

Query  1004  QVRESVRAKLRILVRRTLQRYKYPPDKAPAAIELIMEQAEALSNH  1048
               R+S +AK+R+ VRR L++Y YPPD    A+E ++EQAE ++N+
Sbjct  994   SKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

144) Sbal223_4470 in NC_011668


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  748 bits (2829),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 476/1096 (44%), Positives = 758/1096 (70%), Gaps = 80/1096 (7%)

Query  3     TEDQLEQECIRWFTDQGYLYKNGYDIAPDGDSPERDDYHQVVLKQRLLNQLAIINPELPI  62
              ED+LEQ  + W+   GY YK+G +I+  + +PER    +VVL +RL + L  IN+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    EALNDVVNTVSSPDTPILIKNNRVFHKFVIEGVPVE-YTAVEDGESKTKHTHAQLMDFTT  121
               ++  ++ ++   +P L+ NN  FH  +I+G+ +E Y    D+E+++     +++DF  
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDY----DDEGQSIVEIVKIIDFEY  121

Query  122   TDNNEFLIVNQFTITGTKGNRRPDVLVFINGLPISVIELKNPADEHADIWNAFNQLQTYK  181
              +NN+FL VNQ+TI     ++RPD+++FINGLPI VIELKN+++E  ++ ++++QL+TYK
Sbjct  122   PQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  182   DEISDLFIFNEALVVSDGWTARVGSLTANKERFLPWKTVTGE-DDKPLLEFQLETMVRGF  240
               I++LF FNE LV SDG  ++ GSLTAN +RF+ W++  G+ +  P L   L+ +++G 
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLA-SLDVLIHGM  240

Query  241   FKPDLLLDYIRYFILFEIDNDNIIKKI-AGYHQFHAVRAAVEATVKAKQADSDLPMVAES  299
             ++P+ LLD IRYF+LF+ D    I KI A+YHQ+ AV  AV+ ++               
Sbjct  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRAL---------------  285

Query  300   IGKYQVQATKGLDKIKAGSGKAGVVWHTQGSGKSISMVCYASKLLQQPAMNNPTIVVVTD  359
                        L     G GK+GV+WHTQGSGKS++MV +++KL+Q   +NNPT+VVVTD
Sbjct  286   -----------LASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTD  332

Query  360   RNDLDGQLYNTFGMAQET-----LKQIPQQADGRDllrqlllnrqSGGIIFTTIQKFALL  414
             RNDLD QLY+TF  ++       L+Q P+QA+ R  L+ LL    SGGI+FTT+QKF   
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVE-SGGIVFTTMQKFEPE  391

Query  415   DDEIEHPILSTRANIVVVSDEAHRSQYGNKSKLVEVKDANGNVTGSKYVFGYSKYMRDAL  474
             ++E   + L+ R N++V++DEAHR+QYG ++K     D +G+  G KY  GY+KY+RDAL
Sbjct  392   QNETTMAALTERKNVIVMADEAHRTQYGFNAKY----DDKGE--GIKY--GYAKYLRDAL  443

Query  475   PNASFIGFTGTPIAMDDKDTRGVFGEYVSVYDIQDAVDDGATVPIYYESRLAKLDINQA-  533
             PNA+F+GFTGTP+A  DK+T+ VFG+Y+ VYD+ +AV DG+TV IYYESR+  L++ Q+ 
Sbjct  444   PNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSL  503

Query  534   EIEELNDQVedeigeeeeTASREQIKSQWATLEKLVGAEPRIQQVALDLVNHFSTRSETF  593
             +++E  +++ ++         ++++KS+W+ +E L GA PR++ +A D+++HF TR ++ 
Sbjct  504   DLDEAYNDITEDQE----EDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAM  559

Query  594   PGKAMIVAMSREICVDLYNAIVAIKPEWHHPDPDKGAIKIVMTGSASDKEKMQPHIHDKK  653
              GK+MIV+MSR I VDLY+ I+ +KPEWH  D DKG IK+VMTGS+SD    Q HI  KK
Sbjct  560   KGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKK  619

Query  654   TKKLFEKRYKDTQDELQLVIVRDMWLTGFDAPCCHTMYIDKPMKGHNLMQAIARVNRVFK  713
              ++L+EKR KD +DELQLVIVRDMWLTGFD P  HTMYIDKPMKGHNLMQAIARVNRVFK
Sbjct  620   RRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFK  679

Query  714   DKPGGLVVDYIGIANELKNALKTYTNSQGKGQPTVDTAEAFSVLMEKIDIVRGMFATPVD  773
             DKPGGL+VDY+GIA+ LK+ALK YT+S+ ++Q ++DT  A  +++ K D++++M+     
Sbjct  680   DKPGGLIVDYVGIAESLKEALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYN---  735

Query  774   GAVFNYRPEFETNALR----LLPGAVNHLSGLSHRNSKGEEVRDGKRRFLDVMAAMTKAF  829
                ++Y + F+++        ++ +++ + GL++         D ++RF+  ++ + KAF
Sbjct  736   ---LDY-SKFNSDKKSERYYTISNTMDYVIGLGE---------DERQRFIKTVTELGKAF  782

Query  830   SLCNTMDETQGYKNEIAFYSAIKTAFIK----HSTVDKKRSDEERNTALKQILDNAIIAD  885
             +LC T   +Q  ++EIAF+ A+K++++K          +++  E ++ ++Q++ ++++++
Sbjct  783   ALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTE  842

Query  886   GVDDIFNMVGLDKPNIGLLSEEFLEDVKNMKEKNLAVELLEKLLRDEVKARMKNDVVQEK  945
             +V D+++ +GL++P++++LS++FL DV  +K+KN+AVELL++LL+++VK+ MK +    K
Sbjct  843   DVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSK  902

Query  946   KYSERIMTTLQKYHNRSIETAQVIEELIKWakemaadaemaeGLNLSPDEIAFYRALVMN  1005
             ++SE +  +++KY++RSIET++VIEELI+ AK++  + + ++ L L++DEIAFY AL  +
Sbjct  903   RFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASH  962

Query  1006  EASVRELGDDSLRGLAIELTQQLRKSATVDWQKRDSVrarmrnlvrrllrrWKYPPDAAE  1065
             E++   +GD  LR++A ELT+ ++ +  VDW KRDS +A+MR  VRRLL++  YPPD   
Sbjct  963   ETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQK  1022

Query  1066  AAIKLVLEQAEVLADD  1081
              A+  V+EQAE++A++
Sbjct  1023  MAVEQVVEQAELMANN  1038

145) hsdR in NC_004757


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  740 bits (2801),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/1063 (44%), Positives = 739/1063 (70%), Gaps = 47/1063 (4%)

Query  2     ITEQKLEDTAVGWFAELGWPHANGPEIAPDGDQPARTDYRQVVLREHLLAALARINPHIP  61
             + E+ LE+ A+ W+  LG    +G EI+  +  P R   ++VVL+E+L  AL +IN++I 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    aaaleqaahellTVGEPLLIARNRRVHRLLLSGIPVE-FSVGDEKRSDLVNLIDFANPRN  120
             +  +E+A HEL     P L+  N   H  L++GI +E +   ++   ++V++IDF  P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  121   NDFLLVSQFTVRATRQPRRPDLVAFVNGLPLVVIELKNPANEQTDIWDALNQIQTYKEEI  180
             NDFL V+Q+T+      +RPD+V F+NGLP+VVIELKN++NE  ++ D+ +Q++TYK  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   GDLFNTNVAVVVSDGFTARLGSLTANQERMQPWRAIANE-DDRPLLEFELETLVRGFFEP  239
              +LF  N  +V SDG+ ++ GSLTAN +R   WR+   + +  P L   L+ L++G ++P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLA-SLDVLIHGMLNP  243

Query  240   ALFLDYVRHFVLFEQDA-DQIIKKIAGYHQFHAVREAVKATVIAASNPNKGLLEVQEPRA  298
               +LD +R FVLF++D+ ++I K +A+YHQ+ AV  AV  +++A+S+   G         
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDG---------  294

Query  299   TYGKEVQPGSRKAGVVWHTQGSGKSITMACYAGKLLQQPEMKNPTLVVVTDRNDLDGQLF  358
                        K+GV+WHTQGSGKS+TM  ++GKL+Q   ++NPTLVVVTDRNDLD QL+
Sbjct  295   -----------KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLY  341

Query  359   ATFC-----AAEDLLRQTPVQAGSREELREILASREAGGIIFTTVQKFALLDDEEQHPLL  413
             +TF      ++ +LLRQTP QA +R EL+ +L+  E+GGI+FTT+QKF   ++E   + L
Sbjct  342   STFVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAAL  400

Query  414   SDRSNIVVISDEAHRSQYGMKGRLDTKTGKYVFGYAKHMRDALANATFIGFTGTPIALED  473
             ++R N++V++DEAHR+QYG +++ D K     +GYAK +RDAL+NATF+GFTGTP+A  D
Sbjct  401   TERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTD  460

Query  474   KDTRAVFGDYVSIYDIQDAVDDGATVPIFYESRLAKLDVNQA-EIDALNAQvdeviedee  532
             K+T+ VFG+Y+ +YD+ +AV DG+TV I+YESR+  L++ Q+ ++D    +  + I +++
Sbjct  461   KNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLD----EAYNDITEDQ  516

Query  533   diTAREKTKSDWAALTKLVGAQPRLEQVAADLVQHFETRTATLEGKVMIVCMSRDICAEL  592
             +   +++ KS W+ +  L GA+PR+E +A D++QHFETR  ++ GK MIV MSR I  +L
Sbjct  517   EEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDL  576

Query  593   YNATVALRPDWHDADPEKGAIKVVMTGSAADKPLLQPHLYSQQVKKLLEKRFKDPADPLK  652
             Y+  + L+P+WH  D +KG IKVVMTGS++D   +Q H+ +++ ++LLEKR KD  D L+
Sbjct  577   YDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQ  636

Query  653   LVIVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFRNKPGGLVVDYIGIANEL  712
             LVIVRDMWLTGFD P  HTMY+DKPMKGHNLMQAIARVNRVF++KPGGL+VDY+GIA+ L
Sbjct  637   LVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESL  696

Query  713   KAALKTYTESKGKGDPTHNaaealavlleklDIVRGLMHGFDYRGFETDAMK----LLVP  768
             K ALK YTES ++++ + ++  A+ ++L K D++++++  +DY  F++D        +  
Sbjct  697   KEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISN  755

Query  769   VANHILGL-KDGKQRFLDAMLAVSKAFSLCSTLDETAALRTEi----affaavkaaivkf  823
               + ++GL  D +QRF+ ++  ++KAF+LC+T   +  L  EI    A  A++   +   
Sbjct  756   TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPP  815

Query  824   ttvDRKRSDADKNSALKQILDNAIVADGVADIFALAGLDKPNIGLLSEEFLEDVRQMKNR  883
                  +++ A+ ++ ++Q++ +++V+++V D++   GL++P++++LS++FL DV  +K++
Sbjct  816   KEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQK  875

Query  884   NLAVELLEKLLSDEIKARARNNVVQEKKYGDRLLETLRKYHNRAVETAQIIEELIQMAKD  943
             N+AVELL++LL +++K+  + N    K++++ L +++ KY++R++ET+++IEELIQ+AKD
Sbjct  876   NVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKD  935

Query  944   FQAALEREAALGLNPDEIAFYDALANNESAVRELGDDTLKKIAVEITEKLRNSTTVDWQV  1003
             ++   +R   LGLN+DEIAFYDALA++E+A   +GD  L+ IA E+T  ++++  VDW  
Sbjct  936   IKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSK  995

Query  1004  RESVRAKLRILVRRTLQKWKYPPDKQLEAVELVLQQAEVLSNS  1046
             R+S +AK+R+ VRR L+K  YPPD Q  AVE V++QAE+++N+
Sbjct  996   RDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

146) hsdR in NC_002663


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  735 bits (2780),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 466/1061 (44%), Positives = 745/1061 (71%), Gaps = 47/1061 (4%)

Query  3     DESTLEQAALDWFRETGWQTFNGKELFTEGRNPQRHQLSAVILEPIFRTQFALLNPHLPV  62
             +E  LEQ AL+W++  G +  +G+E+   +  P+R     V+L+  +   +  +N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    DCVEQVLAKLKQAESRDLVEANQAFHRLLTQGVPV-TYKKGDDICFETAFLLDYAEPERN  121
               +E+ L  L    S +L+E N +FH  L +G+ +  Y   ++   E   ++D+  P+ N
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  122   AFWAVNQFE-VRGLHLRRPDIVCFINGLPIAILELKNPADEKNDVWNAFHQLQTYKNDLF  180
              F AVNQ+  V G   +RPDIV FINGLPI ++ELKN+++E  +V +++HQL+TYK  + 
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DLLMFNGALAISDGVIAKVGSLTADEERFMPWRTVKNENDKPMVEWQLEILIRGFFRPDL  240
             +L+ FN  L  SDG+ +K GSLTA+ +RFM WR+   + + +     L++LI+G + P+ 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPET  245

Query  241   FTDYLHFFILFERNEKNRLIKKQASYHQFHAVREAVRATVIASRPLSDKVVREPRANYGR  300
             + D +++F+LF+ + K ++ K  A+YHQ+ AV  AV  +++AS                 
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASS----------------  289

Query  301   EVQVGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMGNPTLLVVTDRNDLDGQLFQQF-  359
               + G  K+GV+WHTQGSGKS++M  ++GKL+Q   + NPTL+VVTDRNDLD QL+  F 
Sbjct  290   --EQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFV  345

Query  360   ----SLAKDLLKQDPVRAESREQLRELLASRDVGGVIFTTVQKFALQEDEQAHPLLNGRH  415
                   +K+LL+Q P +AE+R +L+ LL+  + GG++FTT+QKF  +++E + + L  R 
Sbjct  346   KSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERK  404

Query  416   NIVVISDEAHRSQYGLKAKLNAKG-SFQFGYAKHMRDALKNATFIGFTGTPIETEDKDTR  474
             N++V++DEAHR+QYG++AK + KG ++++GYAK +RDAL NATF+GFTGTP+ + DK+T+
Sbjct  405   NVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQ  464

Query  475   AVFGDYVSIYDIQDAVDDGATVPIYYESRLARLDINRAEIEELAQQFDeiveeeeqteae  534
              VFG+Y+ +YD+ +AV DG+TV IYYESR+  L++ ++   +L + +++I E++E+   +
Sbjct  465   MVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQ  522

Query  535   RIKGEFTRLEKLVGAQPRLQQIAKDLIQHFEKRQESQDGKAMIVAMSRDTCVHLYNEIIA  594
             R+K+  +R+E L GA+PR++ +AKD+IQHFE RQ++  GK+MIV+MSR   V+LY+EII 
Sbjct  523   RLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIR  582

Query  595   LKPEWHNDDPSKGAIKIVMTGSAADKALLQPHIYSKQVKQDLEKRFKNPDDPLKLVIVRD  654
             LKPEWH+DD  KG IK+VMTGS++D + +Q HI +K+ ++ LEKR K+ DD L+LVIVRD
Sbjct  583   LKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRD  642

Query  655   MWLTGFDAPCCHTMYVDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALHT  714
             MWLTGFD P  HTMY+DKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+AL  
Sbjct  643   MWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKE  702

Query  715   YTNAKGRGKPTIDTQEALKVLLEKMDAIAGMFATPLEGKVLDIGQFETQAVS----LLPK  770
             YT++ ++++ +IDT+ A+ ++L K D I +M+        LD ++F+++  S     +++
Sbjct  703   YTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYYTISN  755

Query  771   AANHILGL-EDGKKRFADLVLAATKAYALCGTLEQSKTYQRKLAFYAAVKAMMFK--EQI  827
             + + ++GL ED ++RF   V    KA+ALC+T   ++  +  +AF+ AVKA + K  +  
Sbjct  756   TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPP  815

Query  828   GDGKLRKQRQ--DHVLKQILDNSLIADGVDDIFTLCGLEKPNIGLLSDEFLEDVRQIEHK  885
              +GK RK     +  ++Q++ +S+++++V D++   GLE+P++++LSD+FL DV  + +K
Sbjct  816   KEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQK  875

Query  886   NLAVELLEKLLQDNIKSRSARNLVQERKYRERLEATLTKYHNRGIETAQVIEELIQMAKD  945
             N+AVELL++LL++++KS    N    +++ E L  ++ KY++R+IET++VIEELIQ+AKD
Sbjct  876   NVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKD  935

Query  946   FQEAFKRAEDLGLNSDEIAFYDALANNESAVRELGDQILKAIALELVKQLRHSVTVDWQV  1005
             +++  +R+++LGLNSDEIAFYDALA++E+A   +GD+ L+AIA EL K +++++ VDW  
Sbjct  936   IKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSK  995

Query  1006  RESvrarlrilvrrilQKYKYPPDKADEAIDLVLEQAETLS  1046
             R+S +A++R+ VRR+L+KY YPPD    A++ V+EQAE ++
Sbjct  996   RDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMA  1036

147) NT08PM_1867 in NC_017764


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  730 bits (2761),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 465/1063 (44%), Positives = 742/1063 (70%), Gaps = 47/1063 (4%)

Query  3     DENTLEQAALDWFSEIGWQTFHAKELFTEGSNPQRHQLSAVILEPIFRTKFAQLNPHLPE  62
             +E+ LEQ AL+W+  +G +   ++E+   +  P+R     V+L+  +   + ++N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    DCVEQVLVKLKQAESRDLVEANQAFHRLLTQGVPV-TYKKGDDICFETAFLLDYAEPKRN  121
               +E+ L  L    S +L+E N +FH  L +G+ +  Y   ++   E   ++D+  P+ N
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  122   AFWAVNQFE-VRGSHLRRPDIICFINGLPIAILELKNPADEKTDVWDAFHQLQTYKNDLF  180
              F AVNQ+  V G   +RPDI+ FINGLPI ++ELKN+++E  +V D++HQL+TYK  + 
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DLLMFNGALAISDGVVAKVGSLTADEERFMPWRTVNNENDKPTVEWQLDTLIRGFFRPDL  240
             +L+ FN  L  SDG+ +K GSLTA+ +RFM WR+ + + + +     LD LI+G + P+ 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPET  245

Query  241   FTDYLRFFILFERNEKNRLIKKQASYHQFHAVREAVRATVIASRPSSDKMVQEPRANYGR  300
             + D +R+F+LF+ + K ++ K  A+YHQ+ AV  AV  +++AS                 
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASS----------------  289

Query  301   EVQVGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMGNPTLLVVTDRNDLDGQLFQQF-  359
               + G  K+GV+WHTQGSGKS++M  ++GKL+Q   + NPTL+VVTDRNDLD QL+  F 
Sbjct  290   --EQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFV  345

Query  360   ----SLAKDLLKQDPVRAESREQLRELLASRDVGGVIFTTVQKFALQEDEQAHPLLNGRH  415
                   +K+LL+Q P +AE+R +L+ LL+  + GG++FTT+QKF  +++E + + L  R 
Sbjct  346   KSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERK  404

Query  416   NIVVISDEAHRSQYGLKAKLNAKG-AFQFGYAKHMRDALQNATFIGFTGTPIETEDKDTR  474
             N++V++DEAHR+QYG++AK + KG ++++GYAK +RDAL NATF+GFTGTP+ + DK+T+
Sbjct  405   NVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQ  464

Query  475   AVFGDYVSIYDIQDAVDDGATVPIYYESRLARLDINRFEIEELAQQFDeiveeeeqteae  534
              VFG+Y+ +YD+ +AV DG+TV IYYESR+  L++   +  +L + +++I E++E+   +
Sbjct  465   MVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP--QSLDLDEAYNDITEDQEEDVKQ  522

Query  535   RIKGEFTRLEKLVGAQPRLQQIAKDLIQHFEKRQESQDGKAMIVAMSRDICVHLYNEIIA  594
             R+K+  +R+E L GA+PR++ +AKD+IQHFE RQ++  GK+MIV+MSR I V+LY+EII 
Sbjct  523   RLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIR  582

Query  595   LKPEWHNDDPNKGAIKIVMTGSAADKALLQPHIYSKQVKQDLEKRFKNPDDPLKLVIVRD  654
             LKPEWH+DD +KG IK+VMTGS++D + +Q HI +K+ ++ LEKR K+ DD L+LVIVRD
Sbjct  583   LKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRD  642

Query  655   MWLTGFDAPCCHTMYVDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALHT  714
             MWLTGFD P  HTMY+DKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+AL  
Sbjct  643   MWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKE  702

Query  715   YTNAKGRGKPTIDTQEALKVLLEKMDAIAGMFATPLEGKVLDIGQFETQALS----LLPK  770
             YT++ ++++ +IDT+ A+ ++L K D I +M+        LD ++F+++  S     +++
Sbjct  703   YTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYYTISN  755

Query  771   AANHILGL-EDGKKRFADLVLAATKAYALCGTLEQSKTYQRKLa--fyaaakammfkaQI  827
             + + ++GL ED ++RF   V    KA+ALC+T   ++  +  +A      A  + +    
Sbjct  756   TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPP  815

Query  828   GDGKLRKQRQ--DHVLKQILDNSLIADGVDDIFTLCGLEKPNIGLLSDEFLEDVRQMEHK  885
              +GK RK     +  ++Q++ +S+++++V D++   GLE+P++++LSD+FL DV  + +K
Sbjct  816   KEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQK  875

Query  886   NLAVELLEKLLQDNIKSRSARNLVQERKYRERLEATLTKYHNRGIETAQVIEELIQMAKD  945
             N+AVELL++LL++++KS    N    +++ E L  ++ KY++R+IET++VIEELIQ+AKD
Sbjct  876   NVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKD  935

Query  946   FQEAFKRAEDLGLNSDEIAFYDALANNESAVRELGDKILKAIALELVKQLRSSVTVDWQV  1005
             +++  +R+++LGLNSDEIAFYDALA++E+A   +GDK L+AIA EL K ++ ++ VDW  
Sbjct  936   IKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSK  995

Query  1006  RESvrarlrilvrrilQKYKYPPDKADEAIELVLEQAETLSEQ  1048
             R+S +A++R+ VRR+L+KY YPPD    A+E V+EQAE ++++
Sbjct  996   RDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

148) alr4604 in NC_003272


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  728 bits (2755),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/955 (47%), Positives = 695/955 (73%), Gaps = 35/955 (3%)

Query  21   GYSYSNGYDIQPEGIKQERESFGEVILKHRLPQAISRINPTIPHDAQYQAQREIFNIASS  80
            GY Y +G +I   ++  ER S  +V+L +RL +A+ +IN+ I      +A +E+    S+
Sbjct  22   GYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSP  81

Query  81   DLLNNNEIFHKYLTEGITVE-YQKNGETRGEPVKLIDWEHPENNEFLAVNQFTVIEDNHN  139
            +LL+NN  FH  L +GI +E Y+ +G++  E VK+ID E P+NN+FLAVNQ+T+++++ +
Sbjct  82   NLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYK  141

Query  140  HRPDIVLFINGLPLVVIElknaankkanlnaaynqlqTYKRRIPSLFTYNALLVISDGLS  199
             RPDIVLFINGLP+VVIELKN++N    ++ +Y+QL+TYK RIP LFT+N +LV SDG++
Sbjct  142  KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGIN  201

Query  200  ARAGSLTAGFNRFSTWKNPTGENQ----INELEILTNGLLNKQTLLDLIRHFTVFEKSKT  255
            ++AGSLTA ++RF TW++  G+ +    +  L++L +G+LN +TLLDLIR F +F+    
Sbjct  202  TKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQ----  257

Query  256  EDLKTGIVSITTIKKIAAYHQYYAVNKAVESIINASSQEGARKGGVLWHTQGSGKSLSMV  315
            +D K  I  I     +AAYHQYYAVNKAV+  + ASS++G  KGGV+WHTQGSGKSL+MV
Sbjct  258  DDGKGHISKI-----LAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMV  312

Query  316  FLAGKLVLNENLQNPTIVMLTDRNDLDDQLFDTFAGCQQ-----LLRQDPQQAGDREQVR  370
            F++GKL+  + L+NPT+V++TDRNDLD+QL+ TF   +      LLRQ P+QA  R +++
Sbjct  313  FFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELK  370

Query  371  QLLNTNSGGIIFTTVQKFSPADGETLYPQISPRPNIIVLADEAHRSQYGFTAKQVNVLDA  430
             LL+ +SGGI+FTT+QKF P + ET  + ++ R N+IV+ADEAHR+QYGF AK     D 
Sbjct  371  SLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAK----YDD  426

Query  431  EGNVIGKRTKYGFAKYIRQALPNATFVGFTGTPVEQTDKNTPAIFGEYIDIYDISQAVKD  490
             G+ I    KYG+AKY+R+ALPNATFVGFTGTPV  TDKNT  +FG+YID+YD++QAV D
Sbjct  427  KGEGI----KYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  491  GATVPIYYESRLVQVDLDAAGRQlldeldedlsfedlsttqkakakqtkLEAIVGSTKRI  550
            G+TV IYYESR++ ++L + + +L +  ++    ++    Q+ K+K +++EA+ G+  R+
Sbjct  483  GSTVKIYYESRVIPLNL-PQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRV  541

Query  551  RQIAQDIVTHFEARQQVNKGKAMIVTMSRQIAVNLYDAIIQLRPDWHSEDLNLGKIKVVI  610
              +A+DI+ HFE+RQQ  KGK+MIVTMSR+IAV+LYD II+L+P+WHS+D + G IKVV+
Sbjct  542  EALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVM  601

Query  611  TTSAADEGNLVKHHTSKAQRQNLAQRLKDPENSLELAIVCDMWLTGFDAPCLHTMYIDKP  670
            T S++D  ++ +H  +K +R+ L +R+KD ++ L+L IV DMWLTGFD P +HTMYIDKP
Sbjct  602  TGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKP  661

Query  671  LKSHNLMQAIARINRVYFEKTGGLIVDYLGLATELKKALSFYSQSGGKGDLTLNQEVAVG  730
            +K+HNLMQAIAR+NRV+ +K GGLIVDY+G+A  LK AL  Y++S ++++ +++ + AV 
Sbjct  662  MKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVE  720

Query  731  LLLAKLEIVEQIISGFTYQHYFEADTGEKLNILKNATNYVA--APNIKDRFLSEVIALSK  788
            L+L K +++++++  + Y  +     +E+   + N+ +YV   + + ++RF+  V  L+K
Sbjct  721  LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780

Query  789  AHSLAVPHPQAIAASETISFFQAIQASLRKLEGSGDSGGL--SNQDIETAIRQVVDQALV  846
            A +L   +P A   ++ I+FF+A++A+L KL  +   G    +  ++E+ I Q+V Q++V
Sbjct  781  AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV  840

Query  847  SDAVINIFDEAGIKNPDISIISDEFMAEVRGMEHQNLAVELLQKLLKDEVKTRSRTNIVQ  906
            ++ VI++++  G+ +PD+SI+SD+F+ +V G+ ++N+AVELL++LLK++VK+  +TN   
Sbjct  841  TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV  900

Query  907  SRKLSEMLEDALRRYRNQVISVTDILEELLELAKDTKAANARGEELGLEPYELAF  961
            S+++SEML +++ +Y ++ I  + ++EEL++LAKD K  + RG+ELGL++ E+AF
Sbjct  901  SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAF  955

149) hsdR in NC_017080


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  722 bits (2731),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 452/1085 (42%), Positives = 734/1085 (68%), Gaps = 71/1085 (6%)

Query  2     INEDAVEQKALRWFQDTGWAYLHGSELAPDVAPEQRADGKAVVLAGRLAEAVRRLNPQLP  61
             +NED +EQ AL W+Q  G  Y  G+E++      +R  +K VVL  RL  A+R++N+++ 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    aeaveevvraaTQREHPDLARANAAFHRRMIDGVPVR-FEDPSTGEKVQDVARLVDFGGA  120
             +  +E  ++  T    P+L   N +FH  +I+G+ +  ++D   G+ + ++ +++DF  +
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDE--GQSIVEIVKIIDFEYP  122

Query  121   ANNDWLVVNQLAIAGTKDGRRPDVIAYLNGLPIAVIELKNPADEKADVWAAYRQLQTYKD  180
              NND L VNQL+I      +RPD++ ++NGLPI VIELKN+++E  +V  +Y+QL+TYK 
Sbjct  123   QNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  181   EIGELFVRNAALVVSDGITARVGSLTASPEWFLPWRAVSGEADQPKVEMELERVVRGFFR  240
              I +LF  N  LV SDGI ++ GSLTA+ ++F+ WR+  G+++ +     L+ +++G + 
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLN  242

Query  241   PDLLLDYLRHFILF--EGEEDVVKKIAGYHQFHGvraaveatvvaaDRGVETAPGDAVRE  298
             P+ LLD +R F+LF  +G  ++ K +A+YHQ+ +          A DR++ +++ +    
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYA-------VNKAVDRALLASSEQ----  291

Query  299   RPAADWGRRVPRGSGKAGVFWHTQGSGKSISMAMYAGKLMQQPAMNNPTLVVVTDRLDLD  358
                         G GK+GV+WHTQGSGKS++M  ++GKL+Q   +NNPTLVVVTDR DLD
Sbjct  292   ------------GDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLD  337

Query  359   GQLFAQFA-----AAKSLLGEKPDQAESREQLRDYLDGRASGGIVFTTVQKFAPLDGEEA  413
              QL++ F      ++K+LL + P QAE+R +L+  L    SGGIVFTT+QKF P + E +
Sbjct  338   NQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETT  396

Query  414   HPVLSGRSNVVVISDEAHRSQYGIKPTLDRKTGRYVYGYAKHLRDALSGASFIGFTGTPI  473
              + L+ R NV+V++DEAHR+QYG+++  D K     YGYAK LRDAL+ A+F+GFTGTP+
Sbjct  397   MAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPV  456

Query  474   SSEDRDTRGVFGEYVSVYDIADAVEDGATVQIYYESRRAKLDLNDAEIETLNQQvdevve  533
             +S D++T+ VFG+Y+ VYD+++AV DG+TV+IYYESR   L+L ++    L++  +++ E
Sbjct  457   ASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITE  514

Query  534   deetedrertKGHWAQLAKLVGARPRLEAIADDLLAHFDQRKEAMASQVGPDGGKAMIVT  593
             D+E + ++R K+ W+++  L GA+PR+EA+A D++ HF+ R++AM        GK+MIVT
Sbjct  515   DQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMK-------GKGMIVT  567

Query  594   MSRDICVALFDEIVRRRPEMAGSRKDDGTWNPED---GSIRVVMTGTATDRVELRHHQHG  650
             MSR I V L+DEI+R +PE          W+++D   G I+VVMTG+++D   +++H   
Sbjct  568   MSRRIAVDLYDEIIRLKPE----------WHSDDDDKGVIKVVMTGSSSDPTSFQRHIGP  617

Query  651   KAQRERLAKRFKDPADPLELVIVRDMWLTGFDAPCCHTMYVDKPMRGHALMQAIARVNRV  710
             K +R+ L KR KD  D L+LVIVRDMWLTGFD P  HTMY+DKPM+GH LMQAIARVNRV
Sbjct  618   KKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRV  677

Query  711   FREKAGGLVVDYIGIANELKQALKTYTESKGRGQPTVRAEDGLRILKEKVGVLRDMMREN  770
             F++K+GGL+VDY+GIA+ LK+ALK YTES +++Q ++ ++ ++ ++  K +V++DM+ + 
Sbjct  678   FKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYN-  735

Query  771   GGFAYAGFETQPLE----LLPGVTNHLLGL-DDGKRRFLDVMASVLKAFSLCATLDEAAA  825
               + Y+ F+++        ++   + ++GL +D ++RF+  ++ + KAF+LCAT   A  
Sbjct  736   --LDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQE  793

Query  826   LRTEIAFFSAVRGVLAK----HGQEEPKRGGADKSASLKLILDNAVVSEGVDDIFAMAGL  881
             L  EIAFF AV++ L K      +   ++  A+  A ++ ++ ++VV+E+V D++   GL
Sbjct  794   LNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGL  853

Query  882   ERPDIGLLSEGFLEDVRRMPAKNLAVELLERLIRDEIRGRSRNNVVRESRYGERLAETLR  941
             E+PD+++LS++FL DV  +  KN+AVELL+RL+++++++  + N     R++E L++++ 
Sbjct  854   EQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSIN  913

Query  942   RYNNRAIESGAVVEELIAMARDFAEAVRRDEDLGLSPDEIAFYEALAERPEVLREMGDET  1001
             +YN+R+IE++ V+EELI +A+D+ +  +R+++LGL++DEIAFY+ALA +      MGD  
Sbjct  914   KYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKE  973

Query  1002  LKALAVELTAKLRASTTVDWRVRESVrarmrllikrllrkhrYPPAGQERAVDVVIAQAE  1061
             L+A+A ELT  ++ +  VDW  R+S +A+MR+ ++RLL+K  YPP  Q  AV+ V+ QAE
Sbjct  974   LRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAE  1033

Query  1062  RLSEG  1066
              +++ 
Sbjct  1034  LMANN  1038

150) hsdR3 in NC_009053


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  719 bits (2719),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 442/1066 (42%), Positives = 717/1066 (68%), Gaps = 56/1066 (5%)

Query  2     HINENTIEQACIQALQGLGWAYTFGSEI-------ERERAEEVVLKSVLANAITRLNPQL  54
             ++NE+ +EQ  ++ LQ+LG  Y  G+EI       ER    +VVL   L +A+ ++N+++
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  55    PSNVVNDVVALVCKGDITDLTERNQQFYRLLREGVRVE-YRENDEQKIDIVRLIDFQNVH  113
              +  ++  +  +      +L E N  F   L +G+ +E Y ++++  ++IV++IDF+  +
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  114   NNQFDVVNKFTIKGLKGNRRPDVICFVNGLPLVVFELKNPLTESADLQQAFQQFQTYKAE  173
             NN+F  VN++TI     ++RPD++ F+NGLP+VV+ELKN+  E+ +++++++Q++TYK  
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  174   ISDLFVFNQALVISDGTHARIGSLTANFDRFTPWRVVDEKAKQRVSFENELAGLVQGLMS  233
             I++LF FN+ LV SDG +++ GSLTAN+DRF  WR  D ++    ++ + L  L++G+++
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLAS-LDVLIHGMLN  242

Query  234   PENLLNYVQNFVLFERSESGQLIKKIAAYHQFYGVNEAVESTLLAASEQGDRKIGVMWHT  293
             PE LL+ ++ FVLF+    G++ K +AAYHQ+Y+VN AV+ +LLA+SEQGD K GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  294   QGSGKSISMLFYAAKLQAEPSLRNPTIVVVTDRNDLDGQLFATF-----SAGKDLIRQTP  348
             QGSGKS++M+F+++KL     L NPT+VVVTDRNDLD QL++TF      +GK+L+RQTP
Sbjct  303   QGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  349   IQADGREALRVELAKRETGGIIFTTIQKFGLQEGENEHPILNDRQNIIVISDEAHRSQYG  408
              QA+ R  L+  L   E+GGI+FTT+QKF  ++ E   + L +R+N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELK-SLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  409   FTQHLSMGSQSAAYRVGYAKHLRNALPNASFIGFTGTPISLEDKDTQAVFGRYVSIYDIQ  468
             F       +++  Y  GYAK LR+ALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ 
Sbjct  420   FNAKYDDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  469   DAVEDGATVPIVYEARQIPINESQDFQTAVQEADDLFSDDEQSYSFRLREK------LMG  522
             +AV DG+TV I YE+R IP+N +Q ++   +  +D+  D+E+    RL+ K      L G
Sbjct  478   QAVADGSTVKIYYESRVIPLNLPQSLDLD-EAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  523   ADTRLTKLAEDLVKHFENRTALMDGKAMIVAMSRQICVALYDKIIALRPEWHSDNLNEGA  582
             A  R+  LA D+++HFE R   M GK+MIV+MSR+I V LYD II L+PEWHSD+ + G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  583   IKIVMTGSASDPDHFQPHIYGNQEKKTLEKRFKDPNDPLKLVIVRDMWLTGFDAPCCNTM  642
             IK+VMTGS+SDP  FQ HI  ++ ++ LEKR KD +D L+LVIVRDMWLTGFD P  +TM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTM  656

Query  643   YIDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLVDELKSATAEYTNANGKGEMV  702
             YIDKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVG+ + LK A  EYT+++     +
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI  713

Query  703   NDIEKIKLKFLECLDIVRGMFASPVSGQIFPL-FDVLKIHDEMALFEQILTAANHILSLD  761
             +    + L +L   D++++M        ++ L +  ++ +     +  I  + + +++L+
Sbjct  714   DTDKAVELMLLKY-DVIQDM--------LYNLDYSKFNSDKKSERYYTISNTMDYVIGLG  764

Query  762   QQNPVDDKAKDKTPRKNRFLQAMRLAKKGYGLCGSLPEVQAYQRELAFIDAVRAMLAK--  819
             +++            ++RF++++    K+++LC++ P  Q  + E+AF+ AV+A L K  
Sbjct  765   EDE------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLL  812

Query  820   ---REPNSTANPADRQLKLVALLNQAVKADGAVDLFALLNRDQPNIEILSEQFLEQVKNS  876
                +E ++   PA+ +  +  L++Q+V +++ +D++  L  +QP++ ILS++FL +V   
Sbjct  813   QPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGL  872

Query  877   RHKALWLEAIQRYLQAEFKEKGVSNLSVQKDFETRLKEAMNKYRNQNltlleildellAM  936
             ++K + +E ++R L+++ K    +N +V K F   L +++NKY ++++    +++EL+ +
Sbjct  873   KQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQL  932

Query  937   GKEFAERLARGEKLGLTPAEIAFYDALAQNESAVRELGDDVLKNLAMTITEKIRQSATID  996
             +K++ +   RG+ LGL + EIAFYDALA +E+A   +GD  L+ +A  +T  ++++  +D
Sbjct  933   AKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVD  992

Query  997   WQFKDSVRAKMRIEIRRALRLFKYPPDKQAEAVEFVLKQAEVIADE  1042
             W  +DS +AKMR+ +RR L+ + YPPD Q  AVE V+ QAE++A++
Sbjct  993   WSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

151) Mzhil_1435 in NC_015676


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  717 bits (2712),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 478/1046 (46%), Positives = 745/1046 (72%), Gaps = 42/1046 (4%)

Query  16    ALHLLDELGYECIYGPEISPGGNLVERMDYSDVILRNRLQDAIEKINPSIPEKAREEAIE  75
             AL+ L+ LGY+   G EIS  +   ER    DV+L++RL+ A+ KIN+ I  +  E A++
Sbjct  14    ALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALH  73

Query  76    KLLQPSAQDLVFNNHEFHNHIKNGIDVA-YESGNETYYDKVYPVDFNCLTNNDFLAVNQF  134
              L    + +L+ NN  FH+++ NGI++  Y+   ++  + V  +DF+   NNDFLAVNQ+
Sbjct  74    ELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQL  133

Query  135   TVLDGEHKRRPDLILFVNGLPLVVMELKRPDNYTDDSDLIDEAYDQLQTYKKEIPNLLRF  194
             T+++G+ K+RPD++LF+NGLP+VV+ELK +   T+++  ++++Y+QL+TYK  IP+L+ F
Sbjct  134   TIVNGDYKKRPDIVLFINGLPIVVIELKNS---TNETVGVEDGYHQLETYKMRIPQLFTF  190

Query  195   NEILVISDGQDAKAGTLTSNSNFFAPWKHENDNKFSTEPEITTL---INNMCLPEVLIDI  251
             NE+LV SDG ++KAG+LT+N + F  W+  +++   + P +++L   I+ M  PE L+D+
Sbjct  191   NEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQT-ESSPGLASLDVLIHGMLNPETLLDL  249

Query  252   VQNFILFEDD-NGVLLKKIARYHQYYAVNKAVHSTKVAVSPEGDKRCGVVWHTTGAGKSM  310
             ++ F+LF+DD +G + K +A YHQYYAVNKAV+ + +A S +GD + GV+WHT G+GKS+
Sbjct  250   IRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSL  309

Query  311   EMVFYTQKISRDTTLENPTVVVITDRNDLDDQLYDTFSRCIT-----YLGQTPIQAETSK  365
              MVF++ K+ +   L+NPT+VV+TDRNDLD+QLY TF +         L QTP QAET K
Sbjct  310   TMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRK  367

Query  366   DLMDKLTRKSGGIVFTTLQKFSPDEDKYPL--LSERKNIIVLADEAHRSQYGLGAKINRN  423
             +L   L+  SGGIVFTT+QKF P+++   +  L+ERKN+IV+ADEAHR+QYG+ AK + +
Sbjct  368   ELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDDK  427

Query  424   TGEKSYGFAKYLRDALPNASFIGFTGTPIELSDKSTKAIFGDYIDIYDIEQSLHDQVTVP  483
                  YG+AKYLRDALPNA+F+GFTGTP+  +DK+T+ +FG+YID+YD+ Q++ D  TV 
Sbjct  428   GEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVK  487

Query  484   ISYESRLANLKLLTNDLEKLDAGFNEITDGEESERIEKLKSKESSVEAILTTPENMDKIA  543
             I YESR+  L+L  + L+ LD ++N+IT+++E +  ++LKSK S +EA+  +   ++ +A
Sbjct  488   IYYESRVIPLNL-PQSLD-LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALA  545

Query  544   NDIINHFESRSKAMDGKAMIVTMSRHMAAQLYESIIKYRPDWHDEDDAKGQIKVIITGKA  603
             +DII+HFE+R +AM GK+MIVTMSR++A +LY+ II+ +P+WH +DD KG IKV++TG +
Sbjct  546   KDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSS  605

Query  604   SE-TELIDHIRPkqkqkqiqqRMKDPEDELKIVIVCDMWLTGFDVPCLTTMYFLKYLKGH  662
             S+ T +  HI PK++++ +++RMKD +DEL++VIV DMWLTGFDVP + TMY+ K +KGH
Sbjct  606   SDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGH  665

Query  663   NIIQAISRVNRVYLDKPGGLVVDYVGILYDLKHALKQYTESGGKGLLAEDQQVAVDYMQE  722
             N++QAI+RVNRV+ DKPGGL+VDYVGI   LK+ALK+YTES+ ++  A D + AV+ M  
Sbjct  666   NLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESD-QAQTAIDTDKAVELMLL  724

Query  723   KYEQINGMLHGFDYSRVFKVPAGEKLEIVREGADFILQKDILINQEVDQKIRPKGDKDYT  782
             KY+ I++ML  +DYS+      +E+   + +  D+++    L ++E              
Sbjct  725   KYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIG---LGEDE--------------  767

Query  783   RKQFIKFTTELSKAFALASPRPETEAIRDELGYFQSVKSVLISL---DRKKKGYKSTKEL  839
             R++FIK  TEL+KAFAL +  P ++ + DE+++F++VK+ L+ L    +  K  K+  E+
Sbjct  768   RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  840   KTAVRQLVRDTVKTGEIIDVFDFMNMKKEGIGILDEKFLNEVKRMPQknlaaelleklln  899
              + + QLV ++V T ++IDV++ + + + +++IL + FL++V  + QKN+A ELL++LL+
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  900   DKIKAYSKKNIIRSSMFSEKLQQSVNSYRNKNITNIAVVEELIKLAHEIRNEEQREGNLG  959
             +++K+  K N   S  FSE L +S+N Y +++I    V+EELI+LA +I++E+QR  +LG
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  960   LSTEEIAFYDALVENGSAVEQLGDEQLKKIATELVEVIHKNAGVDWTarktvkaklrlkv  1019
             L+++EIAFYDAL  + +A E +GD +L+ IA EL   +  N GVDW+ R + KAK+R+ V
Sbjct  948   LNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAV  1007

Query  1020  kkllkkykyPPDQQKAAVELILKQAH  1045
             ++LLKKY YPPD QK AVE ++ QA+
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQAE  1033

152) GLX_22380 in NC_016027


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  713 bits (2695),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 443/1044 (43%), Positives = 719/1044 (69%), Gaps = 27/1044 (2%)

Query  17    EEAVELAALSWFDLVGWRTLPGDHLAPDGPIGARRDYRQCVLEPELRSALATLNPDATAA  76
             E+ +E  AL W++ +G     G++++  +    R+  ++ VL+  L  AL  +N+D  + 
Sbjct  7     EDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  77    MVDTAVQAVLSVPSQELKENNRAFHTMLASGVPVEIVENGETRTVGL-RLFDRQNLSANR  135
              ++ A++ +    S +L ENN +FH  L +G+ +E  ++     V + +++D +    N 
Sbjct  67    FIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNND  126

Query  136   WLVANQFVVQGEREIIRPDVTAFVNGLPLAVLELKSPVHEHATLESAWHQLQNYKAKAPE  195
              L  NQ+ +       RPD+  F+NGLP+ V+ELK++ +E   +E + HQL+ YK + P+
Sbjct  127   FLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  196   LLRTNQVLVISDGLDARIGSLTAGLDRFGPWRTIEGDTLDDGSRPELEVLIRGVFAPERF  255
             L+  N+VLV SDG++++ GSLTA  DRF  WR+ +G+T    + + L+VLI+G++ PE +
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETL  246

Query  256   LDFIVDFVAFEVVDGVVKSKKLAGYHQFHAVRKALVSTEHAAAEgggrrggVIWHTQGSG  315
             LD+I  FV F+  +    SK LA+YHQ+ AV KA+  +  A++E G+ +GGVIWHTQGSG
Sbjct  247   LDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSG  306

Query  316   KSLTMLFFVRQLQLAKPLRNPTVVIVTDRNDLDDQLFGIFNHHISA-----LRGTPRQAN  370
             KSLTM+FF  +L   + L NPT+V+VTDRNDLD+QL++ F    +      LR TP+QA+
Sbjct  307   KSLTMVFFSGKL--IQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAE  364

Query  371   SAAEMRQLLAVDIGGLVFTGIQKFRGDEDGHPL--LTDRRNVIVIADEAHRSQYGLRKRF  428
             +  E++ LL+V+ GG+VFT +QKF  +++   +  LT+R+NVIV+ADEAHR+QYG+  ++
Sbjct  365   TRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKY  424

Query  429   VVDRNGVRETVGFAEYLRQALPNATFVGFTGTPIEEKDRNTQAVFGDVIDTYDMTQAVTD  488
                 +G++   G+A YLR+ALPNATFVGFTGTP+   D+NTQ VFG+ ID YDMTQAV+D
Sbjct  425   DDKGEGIK--YGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  489   KATVPIHYTARLAKlrlelsenereeldalaeelsegdeaaVEHEKGKLGRFEEVVGAPD  548
              +TV I Y +R+  L L  S +  E  + ++E+  E+    +   K+K +R+E + GA  
Sbjct  483   GSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRL---KSKWSRIEALAGAKP  539

Query  549   RIHEVARDIVAHFEARREALGGGKGMIVTISRRVAVELYNRIAVLRPDWVSADPRDDATG  608
             R++ +A+DI+ HFE+R++A+ G KGMIVT+SRR+AV+LY+ I  L+P+W   ++ DD  G
Sbjct  540   RVEALAKDIIQHFETRQQAMKG-KGMIVTMSRRIAVDLYDEIIRLKPEW---HSDDDDKG  595

Query  609   MLKVVITGKGNTDPELLQPHLRSKRQREELAERFKNPTSGFDLVIVRDMWLTGFDAPSLH  668
             ++KVV+TG +++DP  +Q H+ +K++R+ L  R K+    ++LVIVRDMWLTGFD PS+H
Sbjct  596   VIKVVMTG-SSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMH  654

Query  669   TLYIDKPMRGHGLMQAIARVNRVWGDKPGGLVVDYLGVGTELREALAQYTERDRDQVRPD  728
             T+YIDKPM+GH LMQAIARVNRV  DKPGGL+VDY+G++  L+EAL +YTE D+ Q   D
Sbjct  655   TMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAID  714

Query  729   LDEAVRQTLLRLESAETLLEGVAWRRFFNASPGERLTVLKQCLEHL--LSTQQRDRFVET  786
              D AV   LL+ +  + +L  +   +F +   +ER   + + ++ +  L+ ++R+RF+ T
Sbjct  715   TDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKT  774

Query  787   SLEMEIAYAISAGDERVAVRRDEIAIMAAIRTNLVKY---TKGGV--RSRFDIERDIRQL  841
               E+  A+A+ A +       DEIA+  A+++ LVK     K G   ++  ++E +I QL
Sbjct  775   VTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQL  834

Query  842   LSRAVMSDGILDVFQSAGLERPDLSILSDEFLAEARSSRQPSLAVETLRRLLEGEIKART  901
             +S++V++++++DV+Q+ GLE+PDLSILSD+FL +  + +Q ++AVE L RLL G++K+  
Sbjct  835   VSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLM  894

Query  902   SSNLVEARKLTDRLDETLRRYHNRAVDSLQVIEELIALAKELSAAKSRGeelalseeela  961
              +N   ++++++ L++++ +Y++R++++ +VIEELI LAK++   + RG+EL+L+ +E+A
Sbjct  895   KTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIA  954

Query  962   FYDALAENGSARDLMAHDALRTLAQILTATIRSSVSIDWTRKESVRAKMRIEVRKLLARY  1021
             FYDALA + +A++ M++  LR++A+ LT T++ ++++DW++++S +AKMR+ VR+LL +Y
Sbjct  955   FYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKY  1014

Query  1022  GYPPDLQRAAVDLVIKQAELIAGS  1045
             GYPPDLQ+ AV+ V+ QAEL+A +
Sbjct  1015  GYPPDLQKMAVEQVVEQAELMANN  1038

153) ASU2_03875 in NC_018690


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  713 bits (2697),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/1067 (42%), Positives = 715/1067 (68%), Gaps = 58/1067 (5%)

Query  2     HINENTIEQACIQALQGLGWAYTFGSEI-------ERERAEEVVLKSVLANAITRLNPQL  54
             ++NE+ +EQ  ++ LQ+LG  Y  G+EI       ER    +VVL   L +A+ ++N+++
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  55    PSNVVNDVVALVCKGDITDLTERNQQFYRLLREGVQVE-YRENDEQKIDIVRLIDFQNVH  113
              +  ++  +  +      +L E N  F   L +G+++E Y ++++  ++IV++IDF+  +
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  114   NNQFDVVNQFTIKGVKGNRRPDVICFVNGLPLVVFELKNPLTESADLQQAFQQFQTYKAE  173
             NN+F  VNQ+TI     ++RPD++ F+NGLP+VV+ELKN+  E+ +++++++Q++TYK  
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  174   ISDLFVFNQALVISDGTHARIGSLTANFDRFTPWRVVDEKAKQRVPFENELAGLVQGLMS  233
             I++LF FN+ LV SDG +++ GSLTAN+DRF  WR  D ++     + + L  L++G+++
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLAS-LDVLIHGMLN  242

Query  234   PENLLNYVQNFVLFERSESGLLIKKIAAYHQFYGVNEAVESTLLAASEQGDRKIGVMWHT  293
             PE LL+ ++ FVLF+    G + K +AAYHQ+Y+VN AV+ +LLA+SEQGD K GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  294   QGSGKSISMLFYAAKLQAEPSLRNPTIVVVTDRNDLDGQLFATF-----SAGKDLIRQTP  348
             QGSGKS++M+F+++KL     L NPT+VVVTDRNDLD QL++TF      +GK+L+RQTP
Sbjct  303   QGSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  349   IQADGREALRTELAKRETGGIIFTTIQKFGLHEGENQHPILNDRHNIIVISDEAHRSQYG  408
              QA+ R  L++ L   E+GGI+FTT+QKF  ++ E   + L +R N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKS-LLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  409   FSQHLAMGTQSATYRVGYAKHLRNALPNASFIGFTGTPISLEDKDTQAVFGRYVSIYDIQ  468
             F+       ++  Y  GYAK LR+ALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ 
Sbjct  420   FNAKYDDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  469   DAVEDGATVPIVYEARQIPINESQDFKNAVREA-DDLFSDDEQSYSFRLREK------LI  521
             +AV DG+TV I YE+R IP+N +Q +   + EA +D+  D+E+    RL+ K      L 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALA  535

Query  522   GADTRLTKLAEDLVKHFENRTALMDGKAMIVAMSRQICVVLYDKIIALRPEWHSDNLNEG  581
             GA  R+  LA D+++HFE R   M GK+MIV+MSR+I V LYD II L+PEWHSD+ + G
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKG  595

Query  582   AIKIVMTGSASDPDHFQPHIYGNQEKKSLEKRFKDPSDPFKLVIVRDMWLTGFDAPCCNT  641
              IK+VMTGS+SDP  FQ HI  ++ ++ LEKR KD  D ++LVIVRDMWLTGFD P  +T
Sbjct  596   VIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHT  655

Query  642   MYIDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLVDELKSATAEYTNANGKGEM  701
             MYIDKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVG+ + LK A  EYT+++     
Sbjct  656   MYIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTA  712

Query  702   TQDIEQIKLKFLECLDIVRGMFASPVSGQIFPL-FDALKIHDEMALFEQILTAANHILSL  760
              +    + L +L   D++++M        ++ L +  ++ +     +  I  + + +++L
Sbjct  713   IDTDKAVELMLLKY-DVIQDM--------LYNLDYSKFNSDKKSERYYTISNTMDYVIGL  763

Query  761   DQQNPVDDKAKDKTPRKNRFLQAVRLAKKGYGLCGSLPEVQVYQRELAFIDAVRAMLAK-  819
             ++++            ++RF+++V    K+++LC++ P  Q  + E+AF+ AV+A L K 
Sbjct  764   GEDE------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKL  811

Query  820   ----REPNSTVNPADRQLKLVALLNQAVKADGAVDLFALLNRDQPNIEILSEQFLEKVKN  875
                 +E ++   PA+ +  +  L++Q+V +++ +D++  L  +QP++ ILS++FL  V  
Sbjct  812   LQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEG  871

Query  876   SRHQALWLEAIQRYLQAEIKEKGASNLSVQKDFETRLKEAMNKYRNQNltlleildellA  935
              +++ + +E ++R L++++K    +N +V K F   L +++NKY ++++    +++EL+ 
Sbjct  872   LKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQ  931

Query  936   MGKEFAERLARGEKLGLTPAEIAFYDALAQNESAVRELGDEVLKNLAMTITEKIRQSATI  995
             ++K++ +   RG+ LGL + EIAFYDALA +E+A   +GD  L+ +A  +T  ++++  +
Sbjct  932   LAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGV  991

Query  996   DWQFKDSVRAKMRIEIRRALRLFKYPPDKQVEAVEFVLRQAEVIADE  1042
             DW  +DS +AKMR+ +RR L+ + YPPD Q  AVE V+ QAE++A++
Sbjct  992   DWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

154) hsdR in NC_011852


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  700 bits (2649),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/1065 (42%), Positives = 715/1065 (68%), Gaps = 50/1065 (4%)

Query  4     NENTIEQACLRFLQELGWDYTHGSTINADGENPWRLRTDEVVFRAVLREAVERLNPQLPS  63
             NE+ +EQ  L  LQ LG DY  G+ I+  +  P R    +VV++  L  A+ ++N+++ +
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  64    ATVDEVVALVCKTDITDLTERNQQAYRYLREGVRVE-YRENDEQKVEFARLIDFQQPSLN  122
               ++  +  +      +L E N      L +G+ +E Y ++++  VE+ ++IDF+ P  N
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  123   RFDVVNQLTILGRKGNRRPDVICYINGLPVVVLELKNPLKENADLPQAFNQLQTYKQEIG  182
              F  VNQLTI+    ++RPD++ +INGLP+VV+ELKN+ +E  ++ ++++QL+TYK  I 
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  183   DLFVYNQALVISDGILAKVGSLTADLERFTPWRVVDEKNKQRISFEHELEGLVRGLLNPA  242
             +LF +N+ LV SDGI +K GSLTA+ +RF  WR  D +     ++   L+ L++G+LNP 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLA-SLDVLIHGMLNPE  244

Query  243   SLLDYIQNFIVFEQTSSGRLVKKIAAYHQFYGVNEAVDCTLWAASDQGNGKIGVMWHTQG  302
             +LLD I+ F++F++ + G++ K +AAYHQ+Y+VN AVD +L A+S+QG+GK GV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQG  304

Query  303   SGKSLSMLFYAGKLLSQAELRNPTIVVVTDRNDLDGQLYATF-----SGGQALIRQQPVQ  357
             SGKSL+M+F++GKL+    L NPT+VVVTDRNDLD QLY+TF      +G++L+RQ P Q
Sbjct  305   SGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  358   ADGrealreelakreTGGVIFTTIQKFGLQEGEQAHPVLNERHNIIVISDEAHRSQYGFS  417
             A+ R  L+  L+   +GG++FTT+QKF  ++ E + + L ER N+IV++DEAHR+QYGF+
Sbjct  363   AETRKELKSLLSVE-SGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFN  421

Query  418   QSMKLNEANRTGTYRVGYAKHLRDALPNASFIGFTGTPISLEDKDTQEVFGKYVSIYDIT  477
                K ++      Y  GYAK LRDALPNA+F+GFTGTP++  DK+TQ VFG+Y+ +YD+T
Sbjct  422   A--KYDDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  478   DAVEDGATVPIIYEARQIPIAQSAEFENVVREAQTLLDEDDESSYNFRLREK------LM  531
             +AV DG+TV I YE+R IP+  +  ++  + EA   + ED+E   + RL+ K      L 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALA  535

Query  532   GTDGRLSRLAEDFVKHFEQRTALIDGKAMVVAMSRQICVKLYEKITALRPEWHSDDVNEG  591
             G+  R+  LA D+++HFE R   + GK+M+V+MSR+I V LY+ I  L+PEWHSDD + G
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKG  595

Query  592   AIKIVMTGSASDPEEIQKHIYSSQDKKLLERRFKDPDDPLKVVIVRDMWLTGFDAPCCNT  651
              IK+VMTGS+SDP  +Q+HI + + ++LLE+R KD DD L++VIVRDMWLTGFD P  +T
Sbjct  596   VIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHT  655

Query  652   MYIDKPMKGHNLMQAIARVNRVFRNKSRDNGGLIVDYVGLTSELREATEQYTRSHGKGQM  711
             MYIDKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVG++  L+EA  +YT S+     
Sbjct  656   MYIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTA  712

Query  712   THNIAEIKVKMLEYIDVVRGQFATPVNGQSFKL-FDALKIEDELALFQQVMLGANYILAL  770
              +    + + +L Y DV+++ +        ++L +  ++ +     +  +    +Y+++L
Sbjct  713   IDTDKAVELMLLKY-DVIQDML--------YNLDYSKFNSDKKSERYYTISNTMDYVIGL  763

Query  771   DHQMVADKTEKTPRRNAFLKAVRLAKKGFSLCGADGDVQQYQKELAFYDAVRAILAK---  827
             +++           R+ F+K+V    K+F+LC+++   Q+ + E+AF+ AV+A L K   
Sbjct  764   GED----------ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQ  813

Query  828   --REPNSTASNEERQLQLVALLNKAVDASGAINLFDLLNREQPNINILSDEFLEKIKNSQ  885
               +E ++  +  E + ++  L++++V + + I++++ L  EQP+++ILSD+FL  +   +
Sbjct  814   PPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLK  873

Query  886   TKELWLLAVERYLRSQINEKGAGNLAVQKDFAERLKQALNQYHNQNLTIMQVLEELLNMS  945
              K++ +  ++R L++Q++     N +V K F+E L +++N+Y+++++   +V+EEL++++
Sbjct  874   QKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLA  933

Query  946   KEFTERLQRGEKLGLSPAEIAFYDALARNESAVRELGDDALKNLAKAITDKLRKSATIDW  1005
             K++ +  QRG+ LGL++ EIAFYDALA +E+A   +GD  L+ +A  +T  ++ +  +DW
Sbjct  934   KDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDW  993

Query  1006  QYKEAVRAKMRNLVRVTLRLFKYPPDKCDEAIQFVLEQAEVIADE  1050
               +++ +AKMR  VR  L+ + YPPD    A++ V+EQAE++A++
Sbjct  994   SKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

155) K756_04780 in NC_021521


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  699 bits (2642),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 443/1064 (42%), Positives = 716/1064 (68%), Gaps = 48/1064 (4%)

Query  4     NENTIEQACLRFLQELGWDYTHGSTINADGENPWRLRTDEVVFRSVLREAVERLNPQLPS  63
             NE+ +EQ  L  LQ LG DY  G+ I+  +  P R    +VV++  L  A+ ++N+++ +
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  64    ATVDEVVALVCKTDITDLTERNQQAYRYLREGVRVE-YRENDEQKVEFARLIDFQQPNLN  122
               ++  +  +      +L E N      L +G+ +E Y ++++  VE+ ++IDF+ P+ N
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  123   RFDVVNQLTIAGRKGNRRPDVICYINGLPVVVLELKNPLKENADLPQAFNQLQTYKQEIG  182
              F  VNQLTI     ++RPD++ +INGLP+VV+ELKN+ +E  ++ ++++QL+TYK  I 
Sbjct  126   DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  183   DLFVYNQALVISDGILAKVGSLTADLERFTPWRVVDEKNKQRISFEHELEGLVRGLLNPA  242
             +LF +N+ LV SDGI +K GSLTA+ +RF  WR  D +     ++   L+ L++G+LNP 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLA-SLDVLIHGMLNPE  244

Query  243   SLLDYIQNFIVFEQTSSGRLVKKIAAYHQFYGVNEAVDCTLWAASEQGNGKIGVMWHTQG  302
             +LLD I+ F++F++ + G++ K +AAYHQ+Y+VN AVD +L A+SEQG+GK GV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQG  304

Query  303   SGKSLSMLFYAGKLLSQAELRNPTIVVVTDRNDLDGQLYATF-----SGGQALIRQQPVQ  357
             SGKSL+M+F++GKL+    L NPT+VVVTDRNDLD QLY+TF      +G++L+RQ P Q
Sbjct  305   SGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  358   ADGrealreelakreTGGVIFTTIQKFGLQEGEQAHPVLNERHNIIVISDEAHRSQYGFS  417
             A+ R  L+  L+   +GG++FTT+QKF  ++ E + + L ER N+IV++DEAHR+QYGF+
Sbjct  363   AETRKELKSLLSVE-SGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFN  421

Query  418   QSVKLNELNRTGTYRVGYAKHLRDALPNASFIGFTGTPISLEDKDTQEVFGKYVSIYDIT  477
                K ++      Y  GYAK LRDALPNA+F+GFTGTP++  DK+TQ VFG+Y+ +YD+T
Sbjct  422   --AKYDDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  478   DAVEDGATVPIIYEARQIPIAQSAEFDNVVQEAQTLIDEDDESSYNFRLREK------LM  531
             +AV DG+TV I YE+R IP+  +  +D  ++EA   I ED+E   + RL+ K      L 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALA  535

Query  532   GTEGRLSRLAEDFVKHFEQRTALIDGKAMVVAMSRQICVKLYEKITALRPEWHSDDVNEG  591
             G+  R+  LA D+++HFE R   + GK+M+V+MSR+I V LY+ I  L+PEWHSDD + G
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKG  595

Query  592   AIKIVMTGSASDPADIQKHIYSSQDKKLLERRFKDPDDPLKIVIVRDMWLTGFDAPCCNT  651
              IK+VMTGS+SDP+ +Q+HI + + ++LLE+R KD DD L++VIVRDMWLTGFD P  +T
Sbjct  596   VIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHT  655

Query  652   MYIDKPMKGHNLMQAIARVNRVFRNKSRDNGGLIVDYVGLTSELREATEQYTRSHGKGQM  711
             MYIDKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVG++  L+EA  +YT S+     
Sbjct  656   MYIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTA  712

Query  712   THNIAETKAKMLEYIDVVRGQFATPVNDQPFKLFDALKIEDELALFKQVMLGANHILALD  771
              +        +L Y DV+++     + +  +  F++ K  +    + + M   + +++L+
Sbjct  713   IDTDKAVELMLLKY-DVIQDM----LYNLDYSKFNSDKKSERYYTISNTM---DYVIGLG  764

Query  772   HQTVADKTEKTLRRNAFLKAVRLAKKGFSLCGADGDVQQYQKELAFYDAVRAILAK----  827
             ++           R+ F+K+V    K+F+LC+++   Q+ + E+AF+ AV+A L K    
Sbjct  765   EDE----------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  828   -REPNSTASSEERQLQLVALLNKAVDASGAINLFDLLNREQPNINILSEEFLEKIKNSQT  886
              +E ++  ++ E + ++  L++++V + + I++++ L  EQP+++ILS++FL  +   + 
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  887   KELWLLAVERYLRSQINEKGTGNLAVQKDFAERLKQALNQYHNQNLTIMQVLEELLNMSK  946
             K++ +  ++R L++Q++     N +V K F+E L +++N+Y+++++   +V+EEL++++K
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  947   EFTERLQRGEKLGLSPAEIAFYDALARNESAVRELGDDALKNLAKAITDKLRKSATIDWQ  1006
             ++ +  QRG+ LGL++ EIAFYDALA +E+A   +GD  L+ +A  +T  ++ +  +DW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWS  994

Query  1007  YKEAVRAKMRNLVRVTLRLFKYPPDKCDEAIQFVLEQAEVIADE  1050
              +++ +AKMR  VR  L+ + YPPD    A++ V+EQAE++A++
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

156) hsdR in NC_017452


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  696 bits (2631),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 448/1081 (42%), Positives = 735/1081 (68%), Gaps = 80/1081 (7%)

Query  3     NENDIEQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQLPE  62
             NE+D+EQ++L++LQSLG +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    SAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVE-YTQNGEQKIEMVRLVDFEHWGNN  121
               ++  +   T     +L+  N TF   L +G+ +E Y ++G+  +E+V+++DFE   NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  122   RFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDEI  181
              F+AVNQL I +    KR PDI+ F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETYK  I
Sbjct  126   DFLAVNQLTIVNGDYKKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  182   AELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQSLLNGLLQ  241
             ++LF +N+ L+ SDGI ++ GSL+A+++RF  W+  D +  S+       L+ L++G+L+
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGMLN  242

Query  242   PKDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVESTIFATSEQGDKRIGVMWHT  301
             P  LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AV+ +++A+SEQGD + GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  302   QGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLIKQTP  356
             QGSGKS++M+F++GKL+    L+NPT+VVVTDRNDLD QL+ TF      SGK+L++QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  357   QQVEDRDQLRQLLAQNEVGDVFFTTIQKFALNEEESRFPILNERNNIIVISDEAHRSQYG  416
             +Q E R +L+ LL+  E G++ FTT+QKF  +++E+  + L ER+N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  417   FTQKLHN--GKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQDA  474
             F  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIVYEAR--QIKLAENANHDELFAEIDELLEGEENPKLRLREK------LFGS  526
             V DG+TV I YE+R   ++L+++ + DE + +I E  + EE+ K RL+ K      L G+
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIEALAGA  537

Query  527   EARLHDLAIDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNEIIKLRPEWHSDNINEGAI  586
              +R++ LA D++QHF  R++ + +K+M+V  SR+I VDLY+EII+L+PEWHSD+ + G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  587   KIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCCNTMY  646
             K+VMTGS+SD++  Q+H+ +K+ ++ LE+R KD +D L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  647   LDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELEKATRQYTNSQGKGKLAD  706
             +DKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVGIA+ L  A ++YT+S+       
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD-------  707

Query  707   SVIDVFFKMKEHLEVIRSLFATPVEGKTFDVQTVLEKDNPNDLLMAIRFAANHIL--SLD  764
                                          + QT ++ D++ +L++ +++   + +  +LD
Sbjct  708   -----------------------------QAQTAIDTDKAVELML-LKYDVIQDMLYNLD  737

Query  765   QLSFDGKAHEQHWFNKKET--------EPRKKAFLKAAGLVKKGYMLCGTLAEVEPYNQE  816
                F++    ++ +   +T        E  ++ F+K+   + K++ LC+T +  +  N+E
Sbjct  738   YSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDE  797

Query  817   IAFYDAVRAILTK-----REQKG-TGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQ  870
             IAF+ AV+A L K     +E K      E +  +++LV+Q+V +E+VID+++ L   QP+
Sbjct  798   IAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPD  857

Query  871   ISLLSEEFLQTVKNSPTKNLWVTAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQYHN  930
             +S+LS++FL+ V     KN+ V  ++R L +++K    TN T+ K F   L +++N+Y++
Sbjct  858   LSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNS  917

Query  931   HNLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSKL  990
             +++    +++EL+++++D+++    G+ LGL  +E+AFY+AL+ +++AK+ MGD  L  +
Sbjct  918   RSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAI  977

Query  991   AKEITETLRKSVTIDWQYKEAVRAKMRILVKRALQRYKYPPDKQEEAITYVIKQAEEIAE  1050
             A E+T T++ ++ +DW  +++ +AKMR+ V+R L++Y YPPD Q  A+  V+ QAE +A+
Sbjct  978   AHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMAN  1037

Query  1051  D  1051
             +
Sbjct  1038  N  1038

157) XOO3452 in NC_006834


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  695 bits (2630),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/897 (47%), Positives = 636/897 (71%), Gaps = 51/897 (5%)

Query  1     MQTYKQQIPALFHTNALLVTSDGIAARVGSLSADLERFMPWRTTDGKQVLPKGQPELPTL  60
             ++TYK +IP LF  N +LVTSDGI ++ GSL+A+ +RFM WR+ DG+   + G + L  L
Sbjct  177   LETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVL  236

Query  61    IEGVFAPQRFLELLRWFTAFGETGGG-LVKIIAGYHQFHAVNHAVESTIRASRSAVAEDP  119
             I+G++ P+ +L+L+R F  F + G G + KI+A+YHQ+ AVN AV+ ++ AS        
Sbjct  237   IHGMLNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQ-----  291

Query  120   AKYGSASVKAQPAGDRRAGVIWHTQGSGKSLLMAFYAGRLVQHPAMRNPTLVVLTDRNDL  179
                          GD ++GVIWHTQGSGKSL M F++G+L+Q   + NPTLVV+TDRNDL
Sbjct  292   -------------GDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDL  336

Query  180   DDQLFGTFSMCKA-----LLRQTPVQADSREDLARLLDRASGGVIFTTLQKFGEVD----  230
             D+QL++TF   K+     LLRQTP QA++R +L  LL   SGG++FTT+QKF   +    
Sbjct  337   DNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETT  396

Query  231   -APLTARRNVVVIADEAHRSQYGLKAKLDAKTGMVSYGFAKYMRDALPNASFIGFTGTPI  289
              A+LT R+NV+V+ADEAHR+QYG++AK D K   + YG+AKY+RDALPNA+F+GFTGTP+
Sbjct  397   MAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPV  456

Query  290   EATDVNTPALFGHYIDVYDISRAVEDGATVPIYYESRLARIELDEDEKPHLDAEVEALFE  349
              +TD NT  +FG+YIDVYD+++AV DG+TV IYYESR+  ++L +    +LD   + + E
Sbjct  457   ASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITE  514

Query  350   WEGTDEKEKLKGRAAAVERLVGSQKRLALVAQDLVTHFEERVAALDGKAMAVCMSREICV  409
              +  D K++LK++ + +E L G++ R+  +A+D++ HFE R  A+ GK+M V MSR I V
Sbjct  515   DQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAV  574

Query  410   DLYNEIVKLRPHWHSDDDTLGAVKIVMTGAASDPTQWQQHIGNkarrdalarrakdpadp  469
             DLY+EI++L+P+WHSDDD  G +K+VMTG++SDPT  Q+HIG K RR+ L +R KD  D 
Sbjct  575   DLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDE  634

Query  470   LKLVIVRDMWLTGFDAPSMHTMYVDKPMKGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQ  529
             L+LVIVRDMWLTGFD PSMHTMY+DKPMKGH LMQAIARVNRVF+DKP+GLIVDY+GIA+
Sbjct  635   LQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAE  694

Query  530   NLKSALAQYSPQDKQNTGIDEAQAIAVMREKYEVVRDMYHGFDYLTALNGTPQQRLTMMA  589
             +LK AL +Y+  D+ +T+ID  +A+ +M  KY+V++DM   +DY    ++   +R   ++
Sbjct  695   SLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTIS  754

Query  590   GAIEWILDQQQQWVaaassddgkkaaQRRYQDavlalstayalasasDEALAVREEVGFF  649
              +++ +++  ++              ++R+  +V  L+ A+AL ++   A  + +E++FF
Sbjct  755   NTMDYVIGLGED-------------ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF  801

Query  650   QAIREALVK-----SATGSGINSQERDFAIRQIVSRAVVSTEIVDILKAAGIQSPDISIL  704
             +A++ +LVK         +   + E +  I Q+VS++VV+ +++D+ ++ G++ PD+SIL
Sbjct  802   KAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSIL  861

Query  705   SDEFLAEVQRMDKKNLALEALRKLINDGIRSRSKRNIVETKAFSERLEDAIARYHANAIT  764
             SD+FL +V+ + +KN+A+E L +L+++ ++S  K N   +K FSE L ++I +Y++ +I 
Sbjct  862   SDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIE  921

Query  765   TAEVLQELICIAKDIRAARARGEEQGLSEDEVAFYDALAENDSAVQLMGDDALKVIAHEL  824
             T+ V++ELI +AKDI+  + RG+E GL+ DE+AFYDALA +++A + MGD  L+ IAHEL
Sbjct  922   TSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHEL  981

Query  825   LVSLKGSASVDWARRDSARARMRVLVKRILRKYGYPPDLQDAAVRTVLQQAEALSAG  881
               ++K + +VDW++RDSA+A+MRV V+R+L+KYGYPPDLQ  AV  V++QAE ++  
Sbjct  982   TKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

158) CGSHiEE_04165 in NC_009566


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  695 bits (2630),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 448/1081 (42%), Positives = 735/1081 (68%), Gaps = 80/1081 (7%)

Query  9     NENDIEQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQLPE  68
             NE+D+EQ++L++LQSLG +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  69    SAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVE-YTQNGEQKIEMVRLVDFEHWGNN  127
               ++  +   T     +L+  N TF   L +G+ +E Y ++G+  +E+V+++DFE   NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  128   RFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDEI  187
              F+AVNQL I +    KR PDI+ F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETYK  I
Sbjct  126   DFLAVNQLTIVNGDYKKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  188   AELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQSLLNGLLQ  247
             ++LF +N+ L+ SDGI ++ GSL+A+++RF  W+  D +  S+       L+ L++G+L+
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGMLN  242

Query  248   PKDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVEPTIFATSEQGDKRIGVMWHT  307
             P  LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AV+ +++A+SEQGD + GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  308   QGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLIKQTP  362
             QGSGKS++M+F++GKL+    L+NPT+VVVTDRNDLD QL+ TF      SGK+L++QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  363   QQVEDRDQLRQLLAQNEVGDVFFTTIQKFALNEEESRFPILNERNNIIVISDEAHRSQYG  422
             +Q E R +L+ LL+  E G++ FTT+QKF  +++E+  + L ER+N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  423   FTQKLHN--GKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQDA  480
             F  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  481   VEDGATVPIVYEAR--QIKLAENANHDELFAEIDELLEGEENPKLRLREK------LFGS  532
             V DG+TV I YE+R   ++L+++ + DE + +I E  + EE+ K RL+ K      L G+
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIEALAGA  537

Query  533   EARLHDLAIDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNEIIKLRPEWHSDNINEGAI  592
              +R++ LA D++QHF  R++ + +K+M+V  SR+I VDLY+EII+L+PEWHSD+ + G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  593   KIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCCNTMY  652
             K+VMTGS+SD++  Q+H+ +K+ ++ LE+R KD +D L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  653   LDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELEKATRQYTNSQGKGKLAD  712
             +DKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVGIA+ L  A ++YT+S+       
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD-------  707

Query  713   SVIDVFFKMKEHLEVIRSLFATPVEGKTFDVQTVLEKDNPNDLLMAIRFAANHIL--SLD  770
                                          + QT ++ D++ +L++ +++   + +  +LD
Sbjct  708   -----------------------------QAQTAIDTDKAVELML-LKYDVIQDMLYNLD  737

Query  771   QLSFDGKAHEQHWFNKKET--------EPRKKAFLKAAGLVKKGYMLCGTLAEVEPYNQE  822
                F++    ++ +   +T        E  ++ F+K+   + K++ LC+T +  +  N+E
Sbjct  738   YSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDE  797

Query  823   IAFYDAVRAILTK-----REQKG-TGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQ  876
             IAF+ AV+A L K     +E K      E +  +++LV+Q+V +E+VID+++ L   QP+
Sbjct  798   IAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPD  857

Query  877   ISLLSEEFLQTVKNSPTKNLWVTAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQYHN  936
             +S+LS++FL+ V     KN+ V  ++R L +++K    TN T+ K F   L +++N+Y++
Sbjct  858   LSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNS  917

Query  937   HNLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSKL  996
             +++    +++EL+++++D+++    G+ LGL  +E+AFY+AL+ +++AK+ MGD  L  +
Sbjct  918   RSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAI  977

Query  997   AKEITETLRKSVTIDWQYKEAVRAKMRILVKRALQRYKYPPDKQEEAITYVIKQAEEIAE  1056
             A E+T T++ ++ +DW  +++ +AKMR+ V+R L++Y YPPD Q  A+  V+ QAE +A+
Sbjct  978   AHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMAN  1037

Query  1057  D  1057
             +
Sbjct  1038  N  1038

159) hsdR3 in NC_014920


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  692 bits (2615),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 448/1081 (42%), Positives = 734/1081 (68%), Gaps = 80/1081 (7%)

Query  3     NENDIEQLTLQRLQSLGWEYRYGKDLPVHEGEFARGDLSGVVFVEQLREAVRKLNPQLPE  62
             NE+D+EQ++L++LQSLG +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    SAVDSVVKSATKSDIGDLVVRNQAFYKLLRDGVRVE-YTLNGEQKIEMVRLVDFEHWGNN  121
               ++  +   T     +L+  N +F   L +G+ +E Y  +G+  +E+V+++DFE   NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  122   RFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRKSADLLQAFNQFETYKDEI  181
              F+AVNQL I +    KR PDI+ F+NGLP+VV+ELKN+   + ++ ++++Q+ETYK  I
Sbjct  126   DFLAVNQLTIVNGDYKKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  182   AELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQSLLNGLLK  241
             ++LF +N+ L+ SDGI ++ GSL+A+++RF  W+  D +  S+       L+ L++G+L+
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGMLN  242

Query  242   PEDLLDYIRYFVLFEWDSVGKTIKKIAAYHQYYGVNEAVDSTIWATSEKGDRRIGVMWHT  301
             PE LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AVD ++ A+SE+GD + GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  302   QGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLIKQTP  356
             QGSGKS++M+F++GKL+    L+NPT+VVVTDRNDLD QL+ TF      SGK+L++QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  357   QQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERNNIIVISDEAHRSQYG  416
             +Q E R +L+ LL+  E GG+ FTT+QKF  +++E+  + L ER+N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  417   FTQKLHN--GKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQDA  474
             F  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEAR--QIKLAENANHDELFAEIDELLEGEENPKLRLREK------LLGS  526
             V DG+TV I YE+R   ++L+++ + DE + +I E  + EE+ K RL+ K      L G+
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIEALAGA  537

Query  527   EARLHDLAVDFVQHFAKRNEVADSKAMMVVSSRQICVDLYNEIIKLRPEWHSDNINEGAI  586
              +R++ LA D++QHF  R++   +K+M+V  SR+I VDLY+EII+L+PEWHSD+ + G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  587   KIVMTGSASDAPEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCCNTMY  646
             K+VMTGS+SD+   Q+H+ +K+ ++ LE+R KD +D L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  647   IDKPMQGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELKDATQQYTNSQGKGKLAD  706
             IDKPM+GHNLMQAIARVNRVF++K+   GGLIVDYVGIA+ LK+A ++YT+S+       
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQ------  708

Query  707   SVIDVFFKMKEHLEVIRSLFATPVEGKTFYVQTVLEKDNPNELLMAIRFAANHIL--SLD  764
                                            QT ++ D++ EL++ +++   + +  +LD
Sbjct  709   ------------------------------AQTAIDTDKAVELML-LKYDVIQDMLYNLD  737

Query  765   QLPFDGKAHEQHWFNKKET--------EPRKKAFLKAAGLVKKGYMLCGALAEVEPYNQE  816
                F++    ++ +   +T        E  ++ F+K+   + K++ LC++ +  +  N+E
Sbjct  738   YSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDE  797

Query  817   IAFYDAVRAILTR-----REQKG-TGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQ  870
             IAF+ AV+A L +     +E K      E +  +++LV+Q+V +E+VID+++ L   QP+
Sbjct  798   IAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPD  857

Query  871   ISLLSEEFLQTVKNSPTKNLWVTAMERYLASEIKAKSGANLTLQKDFEQRLKEALNQYHN  930
             +S+LS++FL+ V     KN+ V  ++R L +++K+   +N T+ K F + L +++N+Y++
Sbjct  858   LSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNS  917

Query  931   HNLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSKL  990
             +++    +++EL+++++D+++    G+ LGL  +E+AFY+AL+ +++AK+ MGD  L  +
Sbjct  918   RSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAI  977

Query  991   AKEITETLRKSVTIDWQYKEAVRAKMRILVKRTLQRYKYPPDKQEEAVTYVIKQAEEIAE  1050
             A E+T T++ ++ +DW  +++ +AKMR+ V+R L++Y YPPD Q  AV  V+ QAE +A+
Sbjct  978   AHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMAN  1037

Query  1051  D  1051
             +
Sbjct  1038  N  1038

160) GWCH70_1642 in NC_012793


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  689 bits (2607),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 439/1047 (42%), Positives = 718/1047 (69%), Gaps = 59/1047 (5%)

Query  2     FTEEQLENVVIEYFQELGYNYLPASEL--------KRDEKEVLLFDRLEAALVRLNPSLS  53
             F E++LE+V +E +Q LGY+Y  ++E+        ++ +K+V+L +RLE AL ++N+ + 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  54    LDVIREAIRKIRHFETNDVFTNNKVFHKYLTETVEVAEFVN-GETVYHRVRLIDWEVPEN  112
                I  A++ +    + +++ NN  FH  L + +E+ ++ + G+++ + V++ID E P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  113   NDFLVVNQLEVVEKGQKKIPDIVLYVNGIPLVVFELKSTSREEVDIEDAYKQLKNYMNVH  172
             NDFL VNQL +V+ + KK PDIVL++NG+P+VV+ELK+++ E V++ED+Y QL  Y +++
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY-KMR  183

Query  173   IPSLFYYNAFLVISDGVKARAGTITAPLDRFLAWKKIHIEDEVVEN-RELETLMYGLFNQ  231
             IP LF +N  LV SDG++++AG++TA  DRF++W+  + + E       L+ L+ G++N 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  232   KRFLDVIKNFTLFTNEAK-----IMAAYHQYYGMKKAIESTIRAVGK--DGRAGVIWHTQ  284
               +LD+I+ F LF +++K     I+AAYHQYY+++KA++ ++ A +   DG++GVIWHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  285   GSGKSYSMVFLAGNLVKREELKNPTIVVITDRNDLDGQLFETF-----SGASEFLRQTPQ  339
             GSGKS +MVF++G+L++   L+NPT+VV+TDRNDLD QL+ TF      ++  +LRQTP+
Sbjct  304   GSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  340   QAETRSHIKELLENRQTGGIIFSTIQKFEEET-----GLLSDRENIIVMVDEAHRSQYGV  394
             QAETR ++K LL + ++GGI+F+T+QKFE E      + L++R N+IVM DEAHR+QYG 
Sbjct  362   QAETRKELKSLL-SVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  395   DPKYDIVTGEQKYGYAKYLREALPNATYIAFTGTPIETTDKSTTGLFGDVIDVYDMTQAV  454
             ++KYD      KYGYAKYLR+ALPNAT+++FTGTP+ +TDK+T  +FG+ IDVYDMTQAV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  455   QDGATVKIYYESRLAKVKLDEKKMNEIDQEYWNMQVNEGVDDYIVEQSQKSLSRMEQIIG  514
              DG+TVKIYYESR+  ++L +    ++D+ Y   ++ E+ ++ + ++ +   SR+E + G
Sbjct  481   ADGSTVKIYYESRVIPLNLPQS--LDLDEAY--NDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  515   DKDRIREVVADIISHYEERENLVAGKAMIVAYSRKTAFAMYKEIMRQRPDW------KEK  568
              K R+  +  DII H+E R++ + GK+MIV+ SR+ A  +Y EI+R +P+W      K  
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  569   VKIVMTENNQDPEELAKLVGNKQTRKQREKEFKDVNHPFKIVIVVDMWLTGFDVPALDTM  628
             +K+VMT ++ DP  + + +G K+ R+  EK  KDV++ +++VIV DMWLTGFDVP+++TM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTM  656

Query  629   YIDKPMKAHNLMQAIARVNRVYPGKTGGLIVDYIGLKRDLMEALKTYTKRDQDKVQ-ENE  687
             YIDKPMK+HNLMQAIARVNRV+ +K GGLIVDY+G+   L EALK YT  DQ +   + +
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  688   QARDIALNILEVLRNMFHEFDYSAFFGDSDKKRYEVIRDGAEFV-QQTEKRKSLFMTETK  746
             +A ++ L   +V+++M+ ++DYS F +D    RY  I +  ++V    E  +  F+    
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVT  776

Query  747   KLKDVYKIC-TGLLSKEQKEEISYFIAVRSFIMK--------SSRKGAPDLKEVNERISK  797
              L   + +C T   ++E ++EI++F AV++ ++K         +RK ++   EV+  I++
Sbjct  777   ELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPA---EVEAEINQ  833

Query  798   MLEEAILEDEVMVLTQASSSESFDL--LNEENIKKLRALPQKNIAANILMRVLKEKLQDV  855
             ++ ++++ ++V+ + Q+ + E  DL  L+++ +K + +L QKN+A ++L R+LK +++ +
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  856   KKKNMTVSQTFSKRFEKILEKYNNRNDYTDVYevfeelikfkeeleAAIQAGKQLGLTDE  915
              K N TVS+ FS  + + ++KYN+R+   +   V+EELI++  ++    Q G++LGL  +
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRS--IETSKVIEELIQLAKDIKQEQQRGNELGLNSD  951

Query  916   EKAFFDVLGSDPDIKKLMEDEILIKIAKELAKTVKENRTHDWDKKEQAQARMRLQIKKVL  975
             E AF+D L+S+   K  M D  L  IA EL+KTVKEN   DW K++ A+A+MR+ ++++L
Sbjct  952   EIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLL  1011

Query  976   RKYDYPPNKQPKAVEDVLMQAKLQCQN  1002
             +KY+YPP+ Q  AVE+V+ QA L  +N
Sbjct  1012  KKYGYPPDLQKMAVEQVVEQAELMANN  1038

161) PARA_15870 in NC_015964


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  686 bits (2593),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 451/1081 (42%), Positives = 729/1081 (68%), Gaps = 81/1081 (7%)

Query  3     NENDIEQLTLKHLQSLGWEYRYGKDLPVHEGEFARGDLSGVVFVEQLREAVRKFNPQLPE  62
             NE+D+EQ++L  LQSLG +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    SAVDSVVKSATKSDIGNLVVRNQAFYKLLRDGVRVE-YTLNGEQKIEMASLVDFEHVGNN  121
               ++  +   T     NL+  N +F   L +G+ +E Y  +G+  +E+  ++DFE   NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  122   CFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDEI  181
              F+AVNQL I +    KR PDI+ F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETYK  I
Sbjct  126   DFLAVNQLTIVNGDYKKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  182   AELFVYNKALIISDGIAARLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQSLLNGLLK  241
             ++LF +N  L+ SDGI ++ GSL+A+++RF  W+  D +  S+       L+ L++G+L+
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGMLN  242

Query  242   PEDLLDYIRYFVLFERNSSGKTIKKIAAYHQYYGVNEAVDSTLFATSEKGDRRIGVMWHT  301
             PE LLD IRYFVLF+ ++ G   K +AAYHQYY+VN AVD +L+A+SE+GD + GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  302   QGSGKSISMLFYAGKLLTQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLIKQTP  356
             QGSGKS++M+F++GKL+    L+NPT+VVVTDRNDLD QL+ TF      SGK+L++QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  357   QQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPVLNERSNIIVISDEAHRSQYG  416
             +Q E R +L+ LL+  E GG+ FTT+QKF  +++E+  + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  417   FTQKLH-KGK-FQAGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQDA  474
             F  K + KG  ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIVYEARQIRLN---EKEHDELFKEIDDLLEEEQSPALRLQEK------LLGS  525
             V DG+TV I YE+R I LN     + DE +++I +  ++E+    RL+ K      L G+
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIEALAGA  537

Query  526   QARLADLAADFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNEIIKLHPEWHSDNINEGAI  585
             ++R+  LA D++QHF  R++ + +K+M+V  SR+I VDLY+EII+L PEWHSD+ + G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  586   KIVMTGSASDAPEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCCNTMY  645
             K+VMTGS+SD+   Q+H+ +K+ ++ LE+R KD +D L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  646   IDKPMQGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIAEKLKEATQQYTNSQGKGKLTD  705
             IDKPM+GHNLMQAIARVNRVF++K+   GGLIVDYVGIAE LKEA ++YT+S+       
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD-------  707

Query  706   NVIDVFFKMKEHLEFVRSLFATPVEGKTFDVQTALEKDDPKDLLVEIRFAANHIL--GLD  763
                                          + QTA++ D + +L++ +++   + +   LD
Sbjct  708   -----------------------------QAQTAIDTDKAVELML-LKYDVIQDMLYNLD  737

Query  764   RLPFEGKAHEQHWFNKKET--------EPRKKAFLKAAGLVKKGYMLCGALAEVEPYNQE  815
                F++    ++ +   +T        E  ++ F+K+   + K++ LC++ +  +  N+E
Sbjct  738   YSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDE  797

Query  816   IAFYDAVRAILTKRDQNGTGSNERQIL------LKKLVNQAVYSEGVIDLFDLLEKPQPQ  869
             IAF+ AV+A L K  Q    ++ R+        +++LV+Q+V +E+VID+++ L   QP+
Sbjct  798   IAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPD  857

Query  870   INLLSEEFLQTIKNSPTKNLWVSAVERYLASEIKAKSGANLTLQKDFEQRLKEALNQYHN  929
             +++LS++FL+ +     KN+ V  ++R L +++K+   +N T+ K F + L +++N+Y++
Sbjct  858   LSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNS  917

Query  930   HNLSVVEILDELFKMSQDFQERlalgeklglkkeelaFYEALAQNQSARELMGDEVLSKL  989
             +++    +++EL+++++D+++    G+ LGL+ +E+AFY+ALA +++A+E MGD  L  +
Sbjct  918   RSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAI  977

Query  990   AKEITDTLRRSVTIDWQYKEGVRAKMRILVKRALQRYKYPPDKQEEAVSYVIKQAEEIAE  1049
             A E+T T++ ++ +DW  +++ +AKMR+ V+R L++Y YPPD Q  AV  V+ QAE +A+
Sbjct  978   AHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMAN  1037

Query  1050  D  1050
             +
Sbjct  1038  N  1038

162) Plabr_4424 in NC_015174


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  682 bits (2580),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 447/1064 (43%), Positives = 701/1064 (66%), Gaps = 62/1064 (5%)

Query  1     MTGRISEAAIENAALNQLESLNIE-----VIRRGDLTPSFSSKHDLGVVLTDAIHSSIEK  55
             M  +++E  +E+ AL+ L+SL  +      I    LTP    K D +VVL + ++ ++ K
Sbjct  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPE--RKSDKDVVLHERLEKALRK  58

Query  56    FNPHLPEATIATVVVSLSRPPHSILVENSRWFHKLLIEGVPVE-YKDGETGEIRGGRARL  114
             +N+++    I   +  L+    + L+EN+  FH  LI+G+ +E Y D   G+      ++
Sbjct  59    INSDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDE--GQSIVEIVKI  116

Query  115   IDFENPANNDFLVVRQLAIQGPSGNKIRPDLVLYVNGLPLVVIELKDPANTTATLDMAID  174
             IDFE P NNDFL V QL+I   ++ K RPD+VL++NGLP+VVIELK+++N T  ++ + +
Sbjct  117   IDFEYPQNNDFLAVNQLTI-VNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYH  175

Query  175   QLVRYKEIAPDLFVPNLLLVVSDGLLTRVGSITSGRQRFTPWRPEKG------GEPTLEA  228
             QL  YK   P+LF  N +LV SDG+ T+ GS+T+  +RF  WR+  G      G ++L+ 
Sbjct  176   QLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDV  235

Query  229   LIRELLTPAALLDYLRSCVAFEEDERGNIVKKVAGYHQFRAVRKARESVIDAVKTPDRQN  288
             LI+ +L P +LLD +R  V F++D +G+I K +A+YHQ+ AV KA +  + A       +
Sbjct  236   LIHGMLNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLA------SS  289

Query  289   DEAAGKGGVVWHTQGSGKSLTMLMLAGTLVRAAEMANPTVVIVTDRNDLDDQLFHTFAM-  347
             +++ GKGGV+WHTQGSGKSLTM+ ++G L++   + NPT+V+VTDRNDLD+QL+ TF   
Sbjct  290   EQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKS  347

Query  348   ----GRELLRQEPVQAGSREHLKQLLDRASGGVIFTTIHKFAESH-----GMISERSNVV  398
                 G+ LLRQ P QA +R +LK LL   SGG++FTT++KF   +     + ++ER NV+
Sbjct  348   KGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVI  407

Query  399   VMADEAHRSQYGFIE-----------GGARWMREALPNATFVGFTGTPLMAGDKVTRHVF  447
             VMADEAHR+QYGF             G A+ +R+ALPNATFVGFTGTP+ + DK T+ VF
Sbjct  408   VMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVF  467

Query  448   GEYADVYDIHQAVADGATVPIYYEPRIVKLTIDeagarkaeatiaeaakadeNGEEMEEN  507
             G+Y DVYD+ QAVADG+TV IYYE+R++ L +    ++  +   A    ++++ E++ + 
Sbjct  468   GNYIDVYDMTQAVADGSTVKIYYESRVIPLNL----PQSLDLDEAYNDITEDQEEDVKQR  523

Query  508   IRI---PLEELYGAPERLERVAKFLVEHWEQRRSAMEGKAIVVTMSRGIAARLYDEIAKL  564
             ++     +E L GA  R+E +AK +++H E R+ AM GK+++VTMSR IA  LYDEI +L
Sbjct  524   LKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRL  583

Query  565   RPSWADDDDDKGMLKVIMTGTPADPEHIARHVRSKAQRKALGARFKDPADEFRLAIVVDM  624
             +P W  DDDDKG++KV+MTG+++DP  + RH+ +K +R+ L  R KD  DE++L IV DM
Sbjct  584   KPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDM  643

Query  625   WLTGFDVPCAHTMYLDKPLAGHNLMQAIARVNRVYGAKPGGLIVDLIGLADPLADALATY  684
             WLTGFDVP  HTMY+DKP+ GHNLMQAIARVNRV+  KPGGLIVD +G+A++L +AL  Y
Sbjct  644   WLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEY  703

Query  685   AKATGDSDKPVKELQDEAIPAMQSAFEQLRDFFHGFDYSPALDADPRTVIRTYLGAVDHV  744
             +  +++++ ++    D A+  M   ++ ++D +  +DYS  +++D ++  R Y  ++ + 
Sbjct  704   T-ESDQAQTAIDT--DKAVELMLLKYDVIQDMLYNLDYSK-FNSDKKSE-RYY--TISNT  756

Query  745   MDVNQTVGEETGWKRFRGMVKRLSTAFALAVPREETKEITPHLAFFQNVVRMIRKRLAED  804
             MD    +GE+  ++RF   V  L+ AFAL      ++E+  ++AFF + V+    +L + 
Sbjct  757   MDYVIGLGED-ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF-KAVKAGLVKLLQP  814

Query  805   AAPTSGTGASRDIDEAVRQVVGNAVDADDVIDLFAAAGLDTARLDILSDEFLNRVCALEQ  864
             +       ++ +++  + Q+V+++V ++DVID++ + GL+ + L ILSD+FL+ V +L Q
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  865   QNLALETLRKLLTDQIKISERTNLVQAQKFREALENAMLSYTNKQISTAEMIARLLELAK  924
             +N+A+E L +LL +Q+K   +TN   +++F E L N++  Y ++ I T+ +I  L++LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  925   WVREAKQHGHDLGLSTEEIAFYDALAENGSAKEVMKSDKLRLMARELAEMVKKMPKLDWT  984
              +++ +Q+G++LGL+++EIAFYDALA + +AKE M    LR +A+EL+  VK    +DW+
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWS  994

Query  985   QRESVRADLRRKVRRLLAMYGYPPDLSEDATQLVLKQAELSTEA  1028
             +R+S +A +R  VRRLL  YGYPPDL   A + V+ QAEL ++ 
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

163) hsdR3 in NC_007146


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  681 bits (2576),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 450/1083 (42%), Positives = 737/1083 (69%), Gaps = 84/1083 (7%)

Query  3     NENDIEQLTLQRLQSLGWEYRYGKDLPVHEGEFSRGNLSGVVFIEQLREAVRKLNPQLPE  62
             NE+D+EQ++L++LQSLG +Y+ G+++++      R +  +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    SAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVE-YQDDGEQKIEMARLVDFEHGENN  121
               ++  +   T     +L+  N TF   L +G+ +E Y+D+G+  +E+ +++DFE  +NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  122   RFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDEI  181
              F+AVNQL I +    KR PDI+ F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETYK  I
Sbjct  126   DFLAVNQLTIVNGDYKKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  182   AELFVYNQALIISDGIAARLGSLSADFQRFTPWKVVDEKNKSVRLYFDDELQSLLNGLMQ  241
             ++LF +N+ L+ SDGI ++ GSL+A+++RF  W+  D +  S        L+ L++G+++
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGMLN  242

Query  242   PEDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVESTIFATSEQGDKRIGVMWHT  301
             PE LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AV+ +++A+SEQGD + GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  302   QGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLIKQTP  356
             QGSGKS++M+F++GKL+    L+NPT+VVVTDRNDLD QL+ TF      SGK+L++QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  357   QQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERNNIIVISDEAHRSQYG  416
             +Q E R +L+ LL+  E GG+ FTT+QKF  +++E+  + L ER+N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  417   FTQKLHN--GKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQDA  474
             F  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIVYEAR--QIKLAENANHDELFAEIDELLEGEENPKLRLREK------LLGS  526
             V DG+TV I YE+R   ++L+++ + DE + +I E  + EE+ K RL+ K      L G+
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIEALAGA  537

Query  527   EARLHDLAIDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNQIIALHPEWHSDNINEGAI  586
              +R++ LA D++QHF  R++ + +K+M+V  SR+I VDLY++II L PEWHSD+ + G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  587   KIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCCNTMY  646
             K+VMTGS+SD++  Q+H+ +K+ ++ LE+R KD +D L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  647   LDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELEKATRQYTNSQGKGKLAD  706
             +DKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVGIA+ L  A ++YT+S+       
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD-------  707

Query  707   SVIDVFFKMKEHLEVIRSLFATPVEGKTFDVQAALEKDNPNDLLMAIRFAANHIL--SLD  764
                                          + Q+A++ D++ +L++ +++   + +  +LD
Sbjct  708   -----------------------------QAQTAIDTDKAVELML-LKYDVIQDMLYNLD  737

Query  765   QLSFDGKAHEQHWFNKKET--------EPRKKAFLKTAGLVKKGYMLCGTLAEVEPYNQE  816
                F++    ++ +   +T        E  ++ F+KT   + K++ LC+T +  +  N+E
Sbjct  738   YSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDE  797

Query  817   IAFYDAVRAILTK--------REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQ  868
             IAF+ AV+A L K        + +K  +  E +I  ++LV+Q+V +E+VID+++ L   Q
Sbjct  798   IAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI--NQLVSQSVVTEDVIDVYQTLGLEQ  855

Query  869   PQISLLSEEFLQTVKNSPTKNLWVSAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQY  928
             P++S+LS++FL+ V     KN+ V  ++R L +++K    TN T+ K F   L +++N+Y
Sbjct  856   PDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKY  915

Query  929   HNHNLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLS  988
             +++++    +++EL+++++D+++    G+ LGL  +E+AFY+AL+ +++AK+ MGD  L 
Sbjct  916   NSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELR  975

Query  989   KLAKEITETLRKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIKQAEEI  1048
              +A E+T T++ ++ +DW  +++ +A++R+ VRR L+KY YPPD Q  AV  V+ QAE +
Sbjct  976   AIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELM  1035

Query  1049  AED  1051
             A++
Sbjct  1036  ANN  1038

164) HMPREF0868_0494 in NC_013895


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  679 bits (2566),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/1047 (42%), Positives = 707/1047 (68%), Gaps = 53/1047 (5%)

Query  5     YTEADYESSIIELFQNMGYRYVYAPDLERDFHSP--------LYEEELLSALHRLNPKMP  56
             + E D E   +E +Q++GY Y  + ++     +P        + +E L  AL+++N+ + 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  57    EDAIADALFKLKNFENAELVQKNELFMDYLQHGIEVR-YFVDGEERFGLVYIVDYKNPDN  115
                I  AL  L    +++L+++N  F + L +GIE+  Y  +G+    +V I+D+  P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  116   NSFVVANQWTFIENS-NKRPDVLLFLNGMPVVLVELKSPSREETDASEGYLQIRNYMQEI  174
             N F+  NQ T+++   +KRPD++LF+NG+P+V++ELK+++ E  +  +GY Q+  Y   I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  175   PSMFIYNCICVISDHLTSKAGTITSGEDRFMEWKTKDGSYENTQ-YAQFDTFFEGMFEKE  233
             P +F +N + V SD + +KAG++T+  DRFM W++KDG  E++   A +D +++GM++ E
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPE  244

Query  234   RLLDIIKNFICFSNDGLNKF-KILAGYHQYFAVRKAIEST--KNATVTDGKGGVFWHTQG  290
              LLD+I+ F+ F +DG   + KILA+YHQY+AV KA++ +   ++   DGKGGV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQG  304

Query  291   SGKSLSMVFYAHLLQEVLDSPTIVVITDRNDLDDQLYGQFAKCKD-----FLRQNPVHAT  345
             SGKSL+MVF++  L ++L++PT+VV+TDRNDLD+QLY+ F K K+     +LRQ P +A 
Sbjct  305   SGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAE  364

Query  346   CRKLTETSGKNDIGLKDWLEGRQANGIIFTTMQKFEESSE-----PLSKRRNIIVMADEA  400
              RK           LK  L + ++ GI+FTTMQKFE   +     +L+ R+N+IVMADEA
Sbjct  365   TRK----------ELKSLL-SVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEA  413

Query  401   HRSQYGLKEKIDAKTGEIKTGTARIIRDSLPNATYIGFTGTPIAAKDRNTREVFGDYIDI  460
             HR+QYG++ K D K   IK G A+ +RD+LPNAT++GFTGTP+A+ D+NT+ VFG+YID+
Sbjct  414   HRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDV  473

Query  461   YDMTQAVEDGATRPVYYESRVIKLKFDEPTLHLIDQEYDIMANNADPEVIEKSKKELSQM  520
             YDMTQAV DG+T  +YYESRVI L++ + +L+L D+ Y+ ++++ + +V ++ K   S++
Sbjct  474   YDMTQAVADGSTVKIYYESRVIPLNLPQ-SLDL-DEAYNDITEDQEEDVKQRLKSKWSRI  531

Query  521   DAVLGNDATIDSLTNDIISHYENYRENLLTGKAMIVAYSREIAMKIYKRILEVRPSWQKK  580
             +A+ G  + +++L++DII H+E  R++ + GK+MIV+ SR IA+ +Y  I+ ++P W+  
Sbjct  532   EALAGAKPRVEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSD  590

Query  581   ------VKVVMTESNKDPEEWRAVIGNKHHRDELAKEFKDNNSEMKIAIVVDMWLTGFDV  634
                   +KVVMT S+ DP   +  IG K +R+ L K  KD + E+++ IV DMWLTGFDV
Sbjct  591   DDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDV  650

Query  635   PSLATMYVYKPMQGYNLMQAIARVNRVFKDKEGGLIVDYVGIASALKQAMNDYTARDKKN  694
             PS+ TMY+ KPM+G NLMQAIARVNRVFKDK GGLIVDYVGIA +LK+A+++YT  D+ +
Sbjct  651   PSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ  710

Query  695   YGDTDIAKVAYPKFLEKLSICRDLFHGYDYSKFTNGTDLERSKTITGAVNFIVSIDKERE  754
                 D  K     +L K  + +D++   DYSKF ++   ER  TI+ +++++++++ + E
Sbjct  711   -TAIDTDKAVELMLL-KYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGED-E  767

Query  755   REDFIKEALLLHQALSLCSS-LVERGLRVEAAFFESVRVLVMRLINQGEDKKI--SLPEM  811
             R+ FIK    L +A++LC++    + L  E AFF +V+  +++L++   + K   + +E+
Sbjct  768   RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  812   NARINELLKSSIKSDGVINLFSDV---KEEFSLFDPKFLEEISKMKEKNLAVELLKKLIA  868
             +A IN+L+  S+ +++VI+++  +   + ++S++   FL ++  +K+KN+AVELL++L+ 
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  869   EQIQIYRRSNVVKSEKFSEIIQGVMNRYLNGMLTNEEVIEELLKMAQQIQDAHKAGDELG  928
              Q++   ++N   S +FSE++   +N+Y +  +    VIEEL+++A++I++ ++ G+ELG
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  929   LSEDELAFYDALTKPQAIKDFYENDELIAITKELTETLRKNRTIDWQKRDSARAKMRMMI  988
             L+ DE+AFYDAL+  ++ K+   + EL AI+ ELT T++ N  +DW KRDSA+AKMR+ +
Sbjct  948   LNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAV  1007

Query  989   KRLLKQHRYPPEGMEDAVKTVMTQCEL  1015
             +RLLK+  YPP+    AV  V+ Q EL
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

165) WQG_11930 in NC_020515


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  677 bits (2558),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 447/1064 (43%), Positives = 720/1064 (68%), Gaps = 54/1064 (5%)

Query  4     NENTIEQSAIATLQSLGWDYTYGKTI-LAGLEHEWRERAAEVILKPLLAQAIAKFNPNLP  62
             NE+ +EQ A+  LQSLG DY  G+ I +++L  E++    +V+L   L +A+ K+N+++ 
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  63    AYEVENVVAQVCRAESGDLAERNRQAYDWLRNGVKI-TYQLDGEQVSEVVQLIDFQRPEN  121
             +  +E+ + ++    S +L E N    + L NG+ I  Y+ +G+ + E+V++IDF+ P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  122   NDFRIVNQLDIGGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  181
             NDF  VNQL I     K+ PD++ F+NGLP+VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  182   SDLFVFNQALVISDGIVARIGSLTADLDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  241
             ++LF FN+ LV SDGI ++ GSLTA+ DRF  WR  D + +S   +    L  L++G++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGMLN  242

Query  242   PQNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAAT--GNRKIGVFWHT  299
             P+ LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++  G+ K GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  300   QGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFC-----GGEALLKQTP  354
             QGSGKSL+M+F++GK++    L+NPTLV+VTDRNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  355   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  414
              QA+ R EL+S L+   +GG++FTT+QKF   + E + + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  415   FNQKIDHKGQ-YKEGYAKHLRSALPHASFIGFTGTPIALDDRDTQEVFGKYVSIYDFEDA  473
             FN K D+KG+  K GYAK LR ALP+A+F+GFTGTP+A  D++TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  474   VEDGATVPIIYEPRQISLGESREFAKVMEEA-QQLIDDDENSDNFRLREK------LHSV  526
             V DG+TV I YE+R I+L  ++ +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  527   DSRLQKMAEDIIAHYDERTKQQDGKAMIVVMSRAICVKLYDKITVLRPEWHSNDVHQGSI  586
              +R++ +A DII H++ R +   GK+MIV MSR I V LYD I  L+PEWHS+D ++G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  587   KIVMTSNASDPAEWQVHNQDKKT---LEKRFKDPDDPLKIVIVRDMWLTGFDAPCCNTMY  643
             K+VMT+++SDP+  Q H   KK    LEKR KD DD L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  644   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  703
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  704   DISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNTILQAANHILALDRI  763
             D    +E M+    VI++ +        +D +K      + +   TI ++ + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYY-TISNTMDYVIGLGED  766

Query  764   QPADNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  823
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  824   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  880
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  881   KDLWLSAMERYLAAQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  940
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  941   efeaRQKRGEALGLNPAEMAFYDALARNESAVREMGDEVLMNLAKDITDKLRKSVTVDWQ  1000
             ++   Q+RG+ LGLN+ E+AFYDALA +E+A   MGD  L  +A ++T  ++ ++ VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWS  994

Query  1001  YKDSVRAKMRTLIRIALRSYKYPPDLQAEAIEFVLQQAEEIAGE  1044
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A +
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

166) BCAL0420 in NC_011000


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  677 bits (2558),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 434/1030 (43%), Positives = 669/1030 (65%), Gaps = 66/1030 (6%)

Query  36    ERPDISSGVLPRRLVERVQGINPSLPHSVSAEVALEASRPPHPTLVENNRWFHDLLINGA  95
             ER      VL  RL   ++ IN+ +          E +    P L+ENN  FH+ LING 
Sbjct  39    ERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGI  98

Query  96    PVE-YKDAATGETRGGRARLIDFDNPANNDFLVVRQLTVAGANGKTIRPDLVLYVNGLPL  154
              +E Y D   G++     ++IDF+ P NNDFL V QLT+  ++ K  RPD+VL++NGLP+
Sbjct  99    EIEDYDDE--GQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYKK-RPDIVLFINGLPI  155

Query  155   VVIELKDPANTSATLEVAIDQLGRYKTVAPDLFVPSLLLVASDGLLTRVGSITSGLQRFT  214
             VVIELK+++N +  +E + +QL  YK   P+LF  + +LV+SDG+ T+ GS+T+  +RF 
Sbjct  156   VVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFM  215

Query  215   PWRPAHG------GEPTLEALIRELLNPSALLDYLLSCVAFEEDERGNIVKKVAGYHQFR  268
              WR+ +G      G ++L+ LI+ +LNP +LLD +   V F++D +G+I K +A+YHQ+ 
Sbjct  216   TWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYY  275

Query  269   AVRKARASVISAIKTSARSDDVTAGKGGVVWHTQGSGKSLTMLMLAGTLVRAAEMANPTI  328
             AV KA    + A      S +   GKGGV+WHTQGSGKSLTM+ ++G L++   + NPT+
Sbjct  276   AVNKAVDRALLA------SSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTL  327

Query  329   VIVTDRNDLDDQLFETFAM-----GRALLRQDPMQAEGREHLRQLLDRASGGVVFTTIHK  383
             V+VTDRNDLD+QL+ TF       G++LLRQ P QAE R +L+ LL   SGG+VFTT++K
Sbjct  328   VVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQK  387

Query  384   FTEAH-----GMISERANIVVMADEAHRSQYGFVE-----------GGARWMREALPNAT  427
             F   +     + ++ER N++VMADEAHR+QYGF             G A+ +R+ALPNAT
Sbjct  388   FEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNAT  447

Query  428   FVGFTGTPLMAGDRVTQNVFGEYADVYDVRQAVADGATVPIYYEPRIVKLTIDETGAKEA  487
             FVGFTGTP+ + D+ TQ VFG+Y DVYD+ QAVADG+TV IYYE+R++ L + ++   + 
Sbjct  448   FVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDE  507

Query  488   EAKIAQYATRDEYGQETPENVRISL-------EELYGAPERLQRVAKFVVEHWEERRAAM  540
                   Y   ++  ++  E+V+  L       E L GA  R++ +AK +++H E R+ AM
Sbjct  508   A-----Y---NDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAM  559

Query  541   EGKAMLVTMSRDIAARLYDEICKLRPAWHDEDDAQGAIKVVMTGGPNDSEHMMRHSRSKA  600
              GK+M+VTMSR IA  LYDEI +L+P WH +DD +G IKVVMTG+++D+    RH  +K 
Sbjct  560   KGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKK  619

Query  601   QRKSLADRFKDPTDDFRLAVVVDMWLTGFDVPCAHTMYLDKPLAGHNLMQAIARVNRVYG  660
             +R+ L  R KD  D+++L +V DMWLTGFDVP  HTMY+DKP+ GHNLMQAIARVNRV+ 
Sbjct  620   RRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFK  679

Query  661   EKPGGLIVDMIGLADPLADALATYASATGETDKPVKELQDEAIPAMQSAFEQLRSFFHDF  720
             +KPGGLIVD +G+A++L +AL  Y + +++++ ++    D A+  M   ++ ++  + ++
Sbjct  680   DKPGGLIVDYVGIAESLKEALKEY-TESDQAQTAIDT--DKAVELMLLKYDVIQDMLYNL  736

Query  721   NYAEALDAIPSRVLRVYLGAIDHVLDVKHTVGDETGWQRFGGMVKRLATAFALAVPREET  780
             +Y+        +  R Y  +I + +D    +G++  +QRF   V  L+ AFAL      +
Sbjct  737   DYSKF--NSDKKSERYY--TISNTMDYVIGLGED-ERQRFIKTVTELGKAFALCATEPTA  791

Query  781   RDITPHLAFFQRVAAMIRKRLTDERGPTESRSDGSP-DIDAAVRQVIGGAVDAGEVIDLF  839
             +++  ++AFF+ V A + K L   + P E+++  +P +++A + Q+++ +V + +VID++
Sbjct  792   QELNDEIAFFKAVKAGLVKLL---QPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVY  848

Query  840   AAAGLDAARLDILSDDFLERVSALEQKNLALETLRKLLADQIKLSERSNLVQAQKFREAL  899
              + GL+ + L ILSDDFL  V +L QKN+A+E L +LL +Q+K   ++N   +++F E L
Sbjct  849   QTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEML  908

Query  900   ERAMLGYTNKQITTAQMITQLLALAKWVREAKLHGQDLGLSDEEAAFYDALTENGSAKEA  959
               ++  Y ++ I T+++I +L+ LAK +++ + +G++LGL+ +E AFYDAL+ + +AKEA
Sbjct  909   GNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEA  968

Query  960   MKSDQLRLMARELAEMVKKMPRLDWTQRESVRADLRRKVRRLLAMYGYPPDLSEEATQLV  1019
             M   +LR +A+EL+  VK    +DW++R+S +A +R  VRRLL  YGYPPDL   A + V
Sbjct  969   MGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQV  1028

Query  1020  LRQAELSTEN  1029
             + QAEL ++N
Sbjct  1029  VEQAELMANN  1038

167) Ethha_0476 in NC_014828


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  674 bits (2548),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/1042 (42%), Positives = 696/1042 (67%), Gaps = 54/1042 (5%)

Query  2     PYAEANFENAVMILLEELGYA-------KLYGPDVERDFHNPLYL-DALTGQLPRINPMA  53
              + E ++E+  +  L+ LGY         + +   ER  ++ + L + L   L +IN+  
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  54    DRQAVEEALHKLTHIEHGTLLQKNKRFMDWLQNGIEV-TYQKGGETKNELVRLIDYEHPE  112
             + + +E ALH LT      LL++N  F + L NGIE+  Y+  G++  E+V++ID+E P+
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  113   YNMFCAINQWTITEHE-TKRPDVAVFVNGLPLVVVELKTCMREDTDFSDGYRQIKNYMKE  171
              N F A+NQ TI + +  KRPD+ +F+NGLP+VV+ELK    E  +  DGY+Q+  Y   
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  172   IPVLFQYNAFCIISDLIDSKVGTITSEFDRFVDWKTVNGDYEETQ-FARYDVLFRGMLEP  230
             IP LF +N   + SD I++K G++T+++DRF+ W++ +G+ E +  +A  DVL++GML+P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  231   RRFLDILRYFILFSQDIPED-HKILAGYHQYFAVRKAIEST--RHAVETDGKGGVFWHTQ  287
               +LD++RYF+LF +D   +  KILA+YHQY+AV KA++ +    + + DGKGGV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  288   GSGKSLSMVFYAALLQQALDSPTIIVITDRNDLDDQLYGQFSACKD-----FLRQTPEHA  342
             GSGKSL+MVF+++ L Q L++PT++V+TDRNDLD+QLY+ F   K+     +LRQTP +A
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  343   QSREHLKELLAGRRANGIFFTTMQKFEEAHE-----PLSERRNIIVMADEAHRSQYGLTE  397
             ++R +LK LL+   + GI FTTMQKFE  ++     +L+ER+N+IVMADEAHR+QYG+  
Sbjct  364   ETRKELKSLLSVE-SGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNA  422

Query  398   R-VKKDGTLVVGAARVIRDSLPDATFIGFTGTPISSKDRDTRAVFGDYIDIYDMTQAVED  456
             +   K+  +  G A+ +RD+LP+ATF+GFTGTP++S D++T+ VFG+YID+YDMTQAV D
Sbjct  423   KYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  457   GATRPVYYESRVMNLGLKEDVLRQIDTTYELLAQNANEQDIERSKKELGNLEAILSAPET  516
             G+T  +YYESRV+ L L + +  ++D +Y+ ++++ +E+  +R K   + +EA+ +A   
Sbjct  483   GSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  517   IDTLCRDIIAHYEQNREHLLTGKAMIVAYSRSIAIDIYHKLLELRPGWQKK------VKV  570
             +++L +DII H+E  R++ + GK+MIV+ SR IA+D+Y+ ++ L+P W+        +KV
Sbjct  541   VEALAKDIIQHFE-TRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  571   VMTSGNNDPEEWRNIIGNKSYKRELARKFKDNDDSLKIAIVVDMWLTGFDVPSLATMYVY  630
             VMT++++DP   +  IG K  +  L ++ KD DD L++ IV DMWLTGFDVPS+ TMY+ 
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  631   KPMSGHNLMQAIARVNRVFRDKEGGLVVDYIGIARALKRAMNDYTVRDRSNYGNLDIAKT  690
             KPM GHNLMQAIARVNRVF+DK GGL+VDY+GIA +LK A+++YT  D+++   +D  K+
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-TAIDTDKA  718

Query  691   A---LPKFEEKLRVCGELLYGFDYSAFLLETSNDRQRADLIAGCINFVLGKNADTQKTFA  747
                 L K++    V  ++LY +DYS F  ++ +  +R   I+  +++V+G   D ++ F 
Sbjct  719   VELMLLKYD----VIQDMLYNLDYSKF--NSDKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  748   TEALLLKQARTLCQS-LLNREQRMESALFEAVRVALSRI-----SGTQKLSLKEINDRIN  801
                  L +A +LC +    +E   E A+F AV+ +L ++      G  + +  E++  IN
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  802   EMLQQSVHSEGVINLF---GEQSAEFSLFDPAFLEEISRMKQKNlaaellrkllaeQISA  858
             +++ QSV +E+VI+++   G + +++S++   FL ++  +KQKN+A ELL +LL  Q+ +
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  859   YQHTNLVQAEKFSDRMQKLMNAYRNGQITNAEVIEELQKMAADIAKAHQTGASLGLSPEE  918
                TN   + +FS+ + + +N Y +  I  + VIEEL ++A DI + +Q G  LGL+++E
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  919   LAFYDAITRPEAVKDFYTNDQLLHMTKELADTLRRSRTVDWQKKESARAQMRVMVKRLLR  978
             +AFYDA++  E+ K+   + +L  ++ EL+ T++ +  VDW K++SA+A+MRV V+RLL+
Sbjct  953   IAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLK  1012

Query  979   KYKYPPDGMQDAIQTVLAQCEL  1000
             KY YPPD  + A++ V+ Q EL
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAEL  1034

168) J450_02390 in NC_021738


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  674 bits (2547),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 438/1064 (42%), Positives = 718/1064 (68%), Gaps = 54/1064 (5%)

Query  5     NENTIEQSAIATLQGLGWDYTYGKTI-LAGLEHEWRERATEVVLKPLLAEAIAKFNPNLP  63
             NE+ +EQ A+  LQ+LG DY  G+ I +++L  E++    +VVL   L  A+ K+N+++ 
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  64    ACEVENVVAQVCRAESSDLAERNRQAYDWLRNGVKI-TYQLDGEQVSDVVQLIDFQRPEN  122
             +  +E+ + ++    S++L E N    + L NG+ I  Y+ +G+ + ++V++IDF+ P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  123   NDFRIVNQLDIGGKKGKRIPDLIGFVNGLSLVVFELKNPLKENADIGKAFAQLQTYKDEI  182
             NDF  VNQL I     K+ PD++ F+NGL++VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   SDLFVFNQALVISDSIVARIGSLTADFDRFTPWRVVDEKNQNKRIVFEDELTALLQGVMN  242
             ++LF FN+ LV SD+I ++ GSLTA++DRF  WR  D + ++   +    L  L++G++N
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGMLN  242

Query  243   PKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLATT--GNRKIGVFWHT  300
             P  LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++  G+ K GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  301   QGSGKSLSMLFYAGKVLSQGCLKNPTLVLVTERNDLDGQLYATFC-----GGEALLKQTP  355
             QGSGKSL+M+F++GK++    L+NPTLV+VT+RNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  356   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  415
              QA+ R EL+S L+   +GG++FTT+QKF   + E + + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  416   FSQKINHKGE-YREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDA  474
             F+ K ++KGE  + GYAK LR ALPNA+F+GFTGTP+   DK+TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEPRQISLGESGEFTKVMEEA-QQLIDDDENSYNFRLREK------LHSV  527
             V DG+TV I YE+R I+L  +  +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  528   DSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQGSI  587
              +R++ +A DII H++ R +   GK+M+V MSR I V LY+ I  L+PEWHS+D  +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  588   KIVMTSNASDPAEWQKHNQDKKT---LEKRFKDPDDPLNIVIVRDMWLTGFDAPCCNTMY  644
             K+VMT+++SDP+  Q+H   KK    LEKR KD DD L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  704
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  705   DISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRI  764
             D    +E M+    VI++ +        +D +K      + +   +I  + + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYY-TISNTMDYVIGLGED  766

Query  765   QPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  824
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  825   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  881
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  882   KDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  941
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  942   efeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQ  1001
             ++   Q+RG+ LGL++ E+AFYDALA +E+A   MGD  L  +A ++T  ++ ++ VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWS  994

Query  1002  YKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAGE  1045
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A +
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

169) MHH_c24310 in NC_021082


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  674 bits (2549),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 441/1064 (42%), Positives = 716/1064 (68%), Gaps = 54/1064 (5%)

Query  5     NENTIEQSAIATLQSLGWDYTYGKKI-LAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             NE+ +EQ A+  LQSLG DY  G+ I +++L  E++    +V+L   L +A+ K+N+++ 
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKI-TYQLYGEQVSDVVQLIDFQRPEN  122
             +  +E+ + ++    S +L E N    + L NG+ I  Y+  G+ + ++V++IDF+ P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  123   NDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  182
             NDF  VNQL I     K+ PD++ F+NGLP+VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   SDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  242
             ++LF FN+ LV SDGI ++ GSLTA++DRF  WR  D + +S   +    L  L++G++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGMLN  242

Query  243   PKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAAT--GNRKIGVFWHT  300
             P  LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++  G+ K GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  301   QGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFC-----GGEALLKQTP  355
             QGSGKSL+M+F++GK++    L+NPTLV+VTDRNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  356   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  415
              QA+ R EL+S L+   +GG++FTT+QKF   + E + + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  416   FSQKINHKGE-YREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDA  474
             F+ K ++KGE  + GYAK LR ALPNA+F+GFTGTP+   DK+TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEPRQISLGESGEFSKVMEEA-QQLIDDDENSYNFRLREK------LHSV  527
             V DG+TV I YE+R I+L  +  +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  528   DSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQGSI  587
              +R++ +A DII H++ R +   GK+M+V MSR I V LY+ I  L+PEWHS+D  +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  588   KIVMTSNASDPAEWQKHNQDKKT---LEKRFKDPDDPLNIVIVRDMWLTGFDAPCCNTMY  644
             K+VMT+++SDP+  Q+H   KK    LEKR KD DD L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  704
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  705   DISAVLEKMVEHITVIHGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRI  764
             D    +E M+    VI++ +        +D +K      + +   +I  + + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYY-TISNTMDYVIGLGED  766

Query  765   QPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  824
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  825   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  881
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  882   KDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  941
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  942   efeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQ  1001
             ++   Q+RG+ LGL++ E+AFYDALA +E+A   MGD  L  +A ++T  ++ ++ VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWS  994

Query  1002  YKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAGE  1045
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A +
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

170) F382_03180 in NC_021743


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  673 bits (2545),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 441/1064 (42%), Positives = 716/1064 (68%), Gaps = 54/1064 (5%)

Query  5     NENTIEQSAIATLQSLGWDYTYGKKI-LAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             NE+ +EQ A+  LQSLG DY  G+ I +++L  E++    +V+L   L +A+ K+N+++ 
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKI-TYQLYGEQVSDVVQLIDFQRPEN  122
             +  +E+ + ++    S +L E N    + L NG+ I  Y+  G+ + ++V++IDF+ P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  123   NDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  182
             NDF  VNQL I     K+ PD++ F+NGLP+VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   SDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  242
             ++LF FN+ LV SDGI ++ GSLTA++DRF  WR  D + +S   +    L  L++G++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGMLN  242

Query  243   PKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAAT--GNRKIGVFWHT  300
             P  LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++  G+ K GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  301   QGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFC-----GGEALLKQTP  355
             QGSGKSL+M+F++GK++    L+NPTLV+VTDRNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  356   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  415
              QA+ R EL+S L+   +GG++FTT+QKF   + E + + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  416   FSQKINHKGE-YREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDA  474
             F+ K ++KGE  + GYAK LR ALPNA+F+GFTGTP+   DK+TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEPRQISLGESGEFSKVMEEA-QQLIDDDENSYNFRLREK------LHSV  527
             V DG+TV I YE+R I+L  +  +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  528   DSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQGSI  587
              +R++ +A DII H++ R +   GK+M+V MSR I V LY+ I  L+PEWHS+D  +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  588   KIVMTSNASDPAEWQKHNQDKKT---LEKRFKDPDDPLNIVIVRDMWLTGFDAPCCNTMY  644
             K+VMT+++SDP+  Q+H   KK    LEKR KD DD L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  704
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  705   DISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRI  764
             D    +E M+    VI++ +        +D +K      + +   +I  + + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYY-TISNTMDYVIGLGED  766

Query  765   QPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  824
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  825   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  881
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  882   KDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  941
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  942   efeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQ  1001
             ++   Q+RG+ LGL++ E+AFYDALA +E+A   MGD  L  +A ++T  ++ ++ VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWS  994

Query  1002  YKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAGE  1045
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A +
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

171) J451_03490 in NC_021739


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  673 bits (2545),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 441/1064 (42%), Positives = 716/1064 (68%), Gaps = 54/1064 (5%)

Query  5     NENTIEQSAIATLQSLGWDYTYGKKI-LAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             NE+ +EQ A+  LQSLG DY  G+ I +++L  E++    +V+L   L +A+ K+N+++ 
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKI-TYQLYGEQVSDVVQLIDFQRPEN  122
             +  +E+ + ++    S +L E N    + L NG+ I  Y+  G+ + ++V++IDF+ P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  123   NDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  182
             NDF  VNQL I     K+ PD++ F+NGLP+VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   SDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  242
             ++LF FN+ LV SDGI ++ GSLTA++DRF  WR  D + +S   +    L  L++G++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGMLN  242

Query  243   PKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAAT--GNRKIGVFWHT  300
             P  LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++  G+ K GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  301   QGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFC-----GGEALLKQTP  355
             QGSGKSL+M+F++GK++    L+NPTLV+VTDRNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  356   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  415
              QA+ R EL+S L+   +GG++FTT+QKF   + E + + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  416   FSQKINHKGE-YREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDA  474
             F+ K ++KGE  + GYAK LR ALPNA+F+GFTGTP+   DK+TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEPRQISLGESGEFSKVMEEA-QQLIDDDENSYNFRLREK------LHSV  527
             V DG+TV I YE+R I+L  +  +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  528   DSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQGSI  587
              +R++ +A DII H++ R +   GK+M+V MSR I V LY+ I  L+PEWHS+D  +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  588   KIVMTSNASDPAEWQKHNQDKKT---LEKRFKDPDDPLNIVIVRDMWLTGFDAPCCNTMY  644
             K+VMT+++SDP+  Q+H   KK    LEKR KD DD L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  704
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  705   DISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRI  764
             D    +E M+    VI++ +        +D +K      + +   +I  + + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYY-TISNTMDYVIGLGED  766

Query  765   QPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  824
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  825   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  881
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  882   KDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  941
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  942   efeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQ  1001
             ++   Q+RG+ LGL++ E+AFYDALA +E+A   MGD  L  +A ++T  ++ ++ VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWS  994

Query  1002  YKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAGE  1045
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A +
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

172) D648_15990 in NC_020834


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  673 bits (2545),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 441/1064 (42%), Positives = 716/1064 (68%), Gaps = 54/1064 (5%)

Query  5     NENTIEQSAIATLQSLGWDYTYGKKI-LAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             NE+ +EQ A+  LQSLG DY  G+ I +++L  E++    +V+L   L +A+ K+N+++ 
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKI-TYQLYGEQVSDVVQLIDFQRPEN  122
             +  +E+ + ++    S +L E N    + L NG+ I  Y+  G+ + ++V++IDF+ P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  123   NDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  182
             NDF  VNQL I     K+ PD++ F+NGLP+VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   SDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  242
             ++LF FN+ LV SDGI ++ GSLTA++DRF  WR  D + +S   +    L  L++G++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGMLN  242

Query  243   PKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAAT--GNRKIGVFWHT  300
             P  LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++  G+ K GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  301   QGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFC-----GGEALLKQTP  355
             QGSGKSL+M+F++GK++    L+NPTLV+VTDRNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  356   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  415
              QA+ R EL+S L+   +GG++FTT+QKF   + E + + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  416   FSQKINHKGE-YREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDA  474
             F+ K ++KGE  + GYAK LR ALPNA+F+GFTGTP+   DK+TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEPRQISLGESGEFSKVMEEA-QQLIDDDENSYNFRLREK------LHSV  527
             V DG+TV I YE+R I+L  +  +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  528   DSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQGSI  587
              +R++ +A DII H++ R +   GK+M+V MSR I V LY+ I  L+PEWHS+D  +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  588   KIVMTSNASDPAEWQKHNQDKKT---LEKRFKDPDDPLNIVIVRDMWLTGFDAPCCNTMY  644
             K+VMT+++SDP+  Q+H   KK    LEKR KD DD L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  704
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  705   DISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRI  764
             D    +E M+    VI++ +        +D +K      + +   +I  + + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYY-TISNTMDYVIGLGED  766

Query  765   QPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  824
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  825   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  881
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  882   KDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  941
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  942   efeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQ  1001
             ++   Q+RG+ LGL++ E+AFYDALA +E+A   MGD  L  +A ++T  ++ ++ VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWS  994

Query  1002  YKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAGE  1045
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A +
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

173) D650_9850 in NC_020833


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  673 bits (2545),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 441/1064 (42%), Positives = 716/1064 (68%), Gaps = 54/1064 (5%)

Query  5     NENTIEQSAIATLQSLGWDYTYGKKI-LAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             NE+ +EQ A+  LQSLG DY  G+ I +++L  E++    +V+L   L +A+ K+N+++ 
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKI-TYQLYGEQVSDVVQLIDFQRPEN  122
             +  +E+ + ++    S +L E N    + L NG+ I  Y+  G+ + ++V++IDF+ P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  123   NDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  182
             NDF  VNQL I     K+ PD++ F+NGLP+VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   SDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  242
             ++LF FN+ LV SDGI ++ GSLTA++DRF  WR  D + +S   +    L  L++G++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGMLN  242

Query  243   PKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAAT--GNRKIGVFWHT  300
             P  LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++  G+ K GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  301   QGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFC-----GGEALLKQTP  355
             QGSGKSL+M+F++GK++    L+NPTLV+VTDRNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  356   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  415
              QA+ R EL+S L+   +GG++FTT+QKF   + E + + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  416   FSQKINHKGE-YREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDA  474
             F+ K ++KGE  + GYAK LR ALPNA+F+GFTGTP+   DK+TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEPRQISLGESGEFSKVMEEA-QQLIDDDENSYNFRLREK------LHSV  527
             V DG+TV I YE+R I+L  +  +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  528   DSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQGSI  587
              +R++ +A DII H++ R +   GK+M+V MSR I V LY+ I  L+PEWHS+D  +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  588   KIVMTSNASDPAEWQKHNQDKKT---LEKRFKDPDDPLNIVIVRDMWLTGFDAPCCNTMY  644
             K+VMT+++SDP+  Q+H   KK    LEKR KD DD L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  704
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  705   DISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRI  764
             D    +E M+    VI++ +        +D +K      + +   +I  + + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYY-TISNTMDYVIGLGED  766

Query  765   QPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  824
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  825   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  881
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  882   KDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  941
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  942   efeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQ  1001
             ++   Q+RG+ LGL++ E+AFYDALA +E+A   MGD  L  +A ++T  ++ ++ VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWS  994

Query  1002  YKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAGE  1045
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A +
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

174) N220_08970 in NC_021883


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  673 bits (2545),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 441/1064 (42%), Positives = 716/1064 (68%), Gaps = 54/1064 (5%)

Query  5     NENTIEQSAIATLQSLGWDYTYGKKI-LAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             NE+ +EQ A+  LQSLG DY  G+ I +++L  E++    +V+L   L +A+ K+N+++ 
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKI-TYQLYGEQVSDVVQLIDFQRPEN  122
             +  +E+ + ++    S +L E N    + L NG+ I  Y+  G+ + ++V++IDF+ P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  123   NDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  182
             NDF  VNQL I     K+ PD++ F+NGLP+VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   SDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  242
             ++LF FN+ LV SDGI ++ GSLTA++DRF  WR  D + +S   +    L  L++G++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGMLN  242

Query  243   PKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAAT--GNRKIGVFWHT  300
             P  LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++  G+ K GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  301   QGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFC-----GGEALLKQTP  355
             QGSGKSL+M+F++GK++    L+NPTLV+VTDRNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  356   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  415
              QA+ R EL+S L+   +GG++FTT+QKF   + E + + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  416   FSQKINHKGE-YREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDA  474
             F+ K ++KGE  + GYAK LR ALPNA+F+GFTGTP+   DK+TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEPRQISLGESGEFSKVMEEA-QQLIDDDENSYNFRLREK------LHSV  527
             V DG+TV I YE+R I+L  +  +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  528   DSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQGSI  587
              +R++ +A DII H++ R +   GK+M+V MSR I V LY+ I  L+PEWHS+D  +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  588   KIVMTSNASDPAEWQKHNQDKKT---LEKRFKDPDDPLNIVIVRDMWLTGFDAPCCNTMY  644
             K+VMT+++SDP+  Q+H   KK    LEKR KD DD L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  704
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  705   DISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRI  764
             D    +E M+    VI++ +        +D +K      + +   +I  + + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSDKKSERYY-TISNTMDYVIGLGED  766

Query  765   QPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  824
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  825   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  881
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  882   KDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  941
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  942   efeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQ  1001
             ++   Q+RG+ LGL++ E+AFYDALA +E+A   MGD  L  +A ++T  ++ ++ VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWS  994

Query  1002  YKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAGE  1045
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A +
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

175) FMG_1372 in NC_010376


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  672 bits (2540),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 436/1039 (42%), Positives = 697/1039 (68%), Gaps = 47/1039 (4%)

Query  5     YTEADYEKSIIELFQEMGYRY---------VYAPGLERDLHSPLYEKELEDALYRLNPDM  55
             + E D E+  +E +Q +GY Y           +P    D +  L E+ LE AL ++N+D+
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHER-LEKALRKINSDI  63

Query  56    SDDAIRDALYKLHNFENGELVQKNAVFMDYIQHGIEVR-YFVKGEERSGIVYLVDYSNPD  114
                 I  AL  L    + +L+++N  F + + +GIE+  Y   G+    IV ++D+  P+
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  115   NNSYVVANQWTFVENS-NKRLDVLLFLNGLPVVLVELKSPSREETAASEAYLQIRNYMHE  173
             NN ++  NQ T+V+   +KR D++LF+NGLP+V++ELK+++ E  +  ++Y Q+  Y   
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  174   IPSMFIYNCICVMSDHLTSKAGTITSGEDRFMEWKTKDGNYENTQ-YAQFDTFFEGMFER  232
             IP +F +N + V SD + +KAG++T+  DRFM W++KDG+ E++   A +D +++GM++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  233   ARLLDIIKNFICFSNEGLKRF-KILAGYHQYFAVNKAIESSKHAC--ETDGKGGVFWHTQ  289
               LLD+I+ F+ F ++G  ++ KILA+YHQY+AVNKA++ +  A   + DGKGGV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  290   GSGKSLSMVFYAHLLQTALNSPTIVVITDRNDLDDQLYGQFMKCKD-----FLRQEPVHA  344
             GSGKSL+MVF++  L   LN+PT+VV+TDRNDLD+QLY+ F+K K+     +LRQ P +A
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  345   SSRANLKELLEGRQVNGIIFTTMQKFEE-----SFECLSERRNIIVMADEAHRGQYGLKE  399
              +R +LK LL + +  GI+FTTMQKFE      +   L+ER+N+IVMADEAHR QYG++ 
Sbjct  364   ETRKELKSLL-SVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNA  422

Query  400   RVDEKTGEIKIGSARIIRNALPNATYIGFTGTPVSMKDRNTREVFGDYIDIYDMTQAVED  459
             + D+K   IK G A+ +R+ALPNAT++GFTGTPV+  D+NT+ VFG+YID+YDMTQAV D
Sbjct  423   KYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  460   GATRPVYYESRVMKLKLDEQTLHLIDQEYDVMAENADVYVIEKSKKELGQMEAILGNDKT  519
             G+T  +YYESRV+ L+L  Q+L+L D+ Y+ ++E+ +  V ++ K   +++EA+ G    
Sbjct  483   GSTVKIYYESRVIPLNL-PQSLDL-DEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  520   IDSLVDDILDHYENYRENLLTGKAMIVAYSRPIAMKIYKKILELRPGWTDK------VAV  573
             +++L  DI++H+E  R++ + GK+MIV+ SR IA+ +Y  I+ L+P W         + V
Sbjct  541   VEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  574   VMTNSNKDPEDWSHIIGNKRHKDELAMSFKDDESPLKIAIVVDMWLTGFDVPSLATMYVY  633
             VMT S+ DP    + IG K++++ L    KD +  L++ IV DMWLTGFDVPS+ TMY+ 
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  634   KPMHGYNLMQAIARVNRVFGDKEGGLVVDYVGIASALKQAMNDYTARDKKNYGDTDVAKV  693
             KPM G NLMQAIARVNRVF DK GGL+VDYVGIA +LK+A+++YT  D+ +    D  K 
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-TAIDTDKA  718

Query  694   AYPKFLEKLSICRDLFHGYDYSKFMEGTDLERSRAISGAVNFIVAPIRKKEREDYLKEAL  753
                 +L K  + +D++   DYSKF  +   ER  +IS +++++++ +   ER+ ++K   
Sbjct  719   VELMLL-KYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIG-LGEDERQRFIKTVT  776

Query  754   LLKQALSLCSS-LAERELRIEAAFFESVRVLVTRIM---NQGEGKKISLHEINARINELL  809
              L +A++LC++  + +EL  E AFF +V+  + +++   ++G  +K +  E++A IN+L+
Sbjct  777   ELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTP-AEVEAEINQLV  835

Query  810   KASVKSEGVINLFSDVS---GGFNLFDPKFLDEISKMKEKNLAVELLKKLISEQVKIYKH  866
               SV +E+VI+++  ++    +++++   FL ++  +K+KN+AVELL++L+  QVK    
Sbjct  836   SQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMK  895

Query  867   TNVVKSKKFSEIIQQAMNAYLNGMLTNEQVIEELLNLAKQIAEAHKEGEQLGLTADELAF  926
             TN   SK+FSE++ +++N Y +  +   +VIEEL++LAK+I + ++ G++LGL +DE+AF
Sbjct  896   TNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAF  955

Query  927   YDALTKPQAIKDFYENEELIAITKELADTLRKNRTIDWQKRDSARARMRMMIKKLLRSHR  986
             YDAL+  ++ K+   + EL AI+ EL+ T++ N  +DW KRDSA+A+MR+ +++LL+   
Sbjct  956   YDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYG  1015

Query  987   YPPDGMDDAVETVMTQCEL  1005
             YPPD    AVE V+ Q EL
Sbjct  1016  YPPDLQKMAVEQVVEQAEL  1034

176) GYMC52_2377 in NC_014915


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  671 bits (2536),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/1043 (42%), Positives = 703/1043 (68%), Gaps = 59/1043 (5%)

Query  2     FTEEQLEQAVIEYFQELGYPYMPAkelkrdkkdvllldrlee--------ALVKLNPEVP  53
             F E++LEQ  +E +Q LGY Y  ++E+             +         AL K+N+++ 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  54    VEIIREVMRKIHYFETNDVLTNNKMFHKYLTEAVVVPELVN-GETVYHHVRLIDWETPEN  112
               +I   ++ +    + ++L NN  FH  L +++ + +  + G+++ + V++ID E P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  113   NDFLVVNQLEVIEKGQEKIPDIVLYVNGLPLVIAELKSTSREEVDIEDAYKQLKNYMNVH  172
             NDFL VNQL +++ +  K PDIVL++NGLP+V+ ELK+++ E V++ED+Y QL  Y +++
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY-KMR  183

Query  173   IPSLFYYNAFLVISDGVQARAGTITAPLDRFMAWKKINIEDDVIEN-RELETLIFGLFEP  231
             IP LF +N  LV SDG++++AG++TA  DRFM+W+  + + +       L+ LI G+++P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  232   KRFLDVIKNFTLFANEAK-----IMAAYHQYYGMKKAVASTI--QAIHTDKRAGVIWHTQ  284
               +LD+I+ F LF +++K     I+AAYHQYY+++KAV  ++   + + D ++GVIWHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  285   GSGKSYSMVFLAGNLVRQEQLKNPTIVVITDRNDLDGQLFETFC-----GASEFLRQTPL  339
             GSGKS +MVF++G+L+  + L+NPT+VV+TDRNDLD QL+ TF      ++  +LRQTP 
Sbjct  304   GSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  340   QAETRSHLKELLEHRQTGGIVFSTIQKFEEET-----GLLSERENIIVMVDEAHRSQYGV  394
             QAETR +LK LL   ++GGIVF+T+QKFE E      + L+ER N+IVM DEAHR+QYG 
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  395   DPKYDIETGEQKYGYAKYLREALPNATYIAFTGTPIETTDRSTTGLFGDVIDVYDMTQAV  454
             ++KYD      KYGYAKYLR+ALPNAT+++FTGTP+ +TD++T  +FG+ IDVYDMTQAV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  455   EDGATVKIYYESRLAKVKLDEKKMNEIDQEYWRMQVHEGVGDYIIEQSQKSLSRMEQIIG  514
              DG+TVKIYYESR+  ++L +    ++D+ Y   ++ E+  + + ++ +   SR+E + G
Sbjct  481   ADGSTVKIYYESRVIPLNLPQS--LDLDEAY--NDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  515   DQDRIREVVTDIIHHYEEREHLVKGKAMIIAYSRNTAFAMYKEIMRQRPDW------KDK  568
              + R+  +  DII+H+E R++ +KGK+MI++ SR  A  +Y EI+R +P+W      K+ 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  569   VKIVMTENNQDPEELAKLVGNKQTRKQREKEFKDVDHPFKIVIVVDMWLTGFDVPALDTM  628
             +K+VMT ++ DP  + + +G K+ R+  EK  KDVD+ +++VIV DMWLTGFDVP+++TM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTM  656

Query  629   YIDKPMKAHNLMQAIARVNRVYPGKTGGLIVDYIGLKKNLMEALQTYTKRDQDKVQENTQ  688
             YIDKPMK+HNLMQAIARVNRV+ +K GGLIVDY+G+  +L EAL+ YT  DQ +   +T+
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  689   ARDIALNIL--EVLRNMFHSFDYRAFFGDSDKKRYEVIRDGAEFV---QQTEKRKLLFMT  743
              + + L +L  +V+++M+ ++DY  F +D    RY  I +  ++V    + E+++  F+ 
Sbjct  717   -KAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQR--FIK  773

Query  744   ETKKLKDVYKIC-TGLLSKEQKEEISYFIAVRSFIMK---SSRTGTP--DLKEVNERIAK  797
                 L   + +C T   ++E ++EI++F AV++ ++K   +++ G       EV+  I +
Sbjct  774   TVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  798   MLEEAILEDEVMVLTQAVSSESFDL--LNEENIKKLRALPQKNIASTILMRVLKQKLQDV  855
             ++ ++++ ++V+ + Q+++ E  DL  L+++ +K + +L QKN+A  +L R+LK +++ +
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  856   KKTNMTVSQTFSKRFEKILEKYNNRNDYTDVYEVfeellkfkeelQAAIEEGKQLGLTEE  915
              KTN TVS+ FS  + + ++KYN+R+   +   V+EEL+++  +++   + G++LGL  +
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRS--IETSKVIEELIQLAKDIKQEQQRGNELGLNSD  951

Query  916   EKAFFDVLGSDPDIKKLMEDEVLIQIAKDLAKTVKENRTHDWDKKAQAQARMRLEIKKVL  975
             E AF+D L+S+   K  M D  L  IA +L+KTVKEN   DW K+  A+A+MR+ ++++L
Sbjct  952   EIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLL  1011

Query  976   RKYDYPPNKQPKAVEDVLEQAKL  998
             +KY+YPP+ Q  AVE+V+EQA L
Sbjct  1012  KKYGYPPDLQKMAVEQVVEQAEL  1034

177) GYMC61_0288 in NC_013411


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  671 bits (2536),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/1043 (42%), Positives = 703/1043 (68%), Gaps = 59/1043 (5%)

Query  2     FTEEQLEQAVIEYFQELGYPYMPAkelkrdkkdvllldrlee--------ALVKLNPEVP  53
             F E++LEQ  +E +Q LGY Y  ++E+             +         AL K+N+++ 
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  54    VEIIREVMRKIHYFETNDVLTNNKMFHKYLTEAVVVPELVN-GETVYHHVRLIDWETPEN  112
               +I   ++ +    + ++L NN  FH  L +++ + +  + G+++ + V++ID E P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  113   NDFLVVNQLEVIEKGQEKIPDIVLYVNGLPLVIAELKSTSREEVDIEDAYKQLKNYMNVH  172
             NDFL VNQL +++ +  K PDIVL++NGLP+V+ ELK+++ E V++ED+Y QL  Y +++
Sbjct  125   NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY-KMR  183

Query  173   IPSLFYYNAFLVISDGVQARAGTITAPLDRFMAWKKINIEDDVIEN-RELETLIFGLFEP  231
             IP LF +N  LV SDG++++AG++TA  DRFM+W+  + + +       L+ LI G+++P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  232   KRFLDVIKNFTLFANEAK-----IMAAYHQYYGMKKAVASTI--QAIHTDKRAGVIWHTQ  284
               +LD+I+ F LF +++K     I+AAYHQYY+++KAV  ++   + + D ++GVIWHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  285   GSGKSYSMVFLAGNLVRQEQLKNPTIVVITDRNDLDGQLFETFC-----GASEFLRQTPL  339
             GSGKS +MVF++G+L+  + L+NPT+VV+TDRNDLD QL+ TF      ++  +LRQTP 
Sbjct  304   GSGKSLTMVFFSGKLI--QMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  340   QAETRSHLKELLEHRQTGGIVFSTIQKFEEET-----GLLSERENIIVMVDEAHRSQYGV  394
             QAETR +LK LL   ++GGIVF+T+QKFE E      + L+ER N+IVM DEAHR+QYG 
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  395   DPKYDIETGEQKYGYAKYLREALPNATYIAFTGTPIETTDRSTTGLFGDVIDVYDMTQAV  454
             ++KYD      KYGYAKYLR+ALPNAT+++FTGTP+ +TD++T  +FG+ IDVYDMTQAV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  455   EDGATVKIYYESRLAKVKLDEKKMNEIDQEYWRMQVHEGVGDYIIEQSQKSLSRMEQIIG  514
              DG+TVKIYYESR+  ++L +    ++D+ Y   ++ E+  + + ++ +   SR+E + G
Sbjct  481   ADGSTVKIYYESRVIPLNLPQS--LDLDEAY--NDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  515   DQDRIREVVTDIIHHYEEREHLVKGKAMIIAYSRNTAFAMYKEIMRQRPDW------KDK  568
              + R+  +  DII+H+E R++ +KGK+MI++ SR  A  +Y EI+R +P+W      K+ 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  569   VKIVMTENNQDPEELAKLVGNKQTRKQREKEFKDVDHPFKIVIVVDMWLTGFDVPALDTM  628
             +K+VMT ++ DP  + + +G K+ R+  EK  KDVD+ +++VIV DMWLTGFDVP+++TM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTM  656

Query  629   YIDKPMKAHNLMQAIARVNRVYPGKTGGLIVDYIGLKKNLMEALQTYTKRDQDKVQENTQ  688
             YIDKPMK+HNLMQAIARVNRV+ +K GGLIVDY+G+  +L EAL+ YT  DQ +   +T+
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  689   ARDIALNIL--EVLRNMFHSFDYRAFFGDSDKKRYEVIRDGAEFV---QQTEKRKLLFMT  743
              + + L +L  +V+++M+ ++DY  F +D    RY  I +  ++V    + E+++  F+ 
Sbjct  717   -KAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQR--FIK  773

Query  744   ETKKLKDVYKIC-TGLLSKEQKEEISYFIAVRSFIMK---SSRTGTP--DLKEVNERIAK  797
                 L   + +C T   ++E ++EI++F AV++ ++K   +++ G       EV+  I +
Sbjct  774   TVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  798   MLEEAILEDEVMVLTQAVSSESFDL--LNEENIKKLRALPQKNIASTILMRVLKQKLQDV  855
             ++ ++++ ++V+ + Q+++ E  DL  L+++ +K + +L QKN+A  +L R+LK +++ +
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  856   KKTNMTVSQTFSKRFEKILEKYNNRNDYTDVYEVfeellkfkeelQAAIEEGKQLGLTEE  915
              KTN TVS+ FS  + + ++KYN+R+   +   V+EEL+++  +++   + G++LGL  +
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRS--IETSKVIEELIQLAKDIKQEQQRGNELGLNSD  951

Query  916   EKAFFDVLGSDPDIKKLMEDEVLIQIAKDLAKTVKENRTHDWDKKAQAQARMRLEIKKVL  975
             E AF+D L+S+   K  M D  L  IA +L+KTVKEN   DW K+  A+A+MR+ ++++L
Sbjct  952   EIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLL  1011

Query  976   RKYDYPPNKQPKAVEDVLEQAKL  998
             +KY+YPP+ Q  AVE+V+EQA L
Sbjct  1012  KKYGYPPDLQKMAVEQVVEQAEL  1034

178) Mpet_1680 in NC_014507


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  670 bits (2533),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/1038 (43%), Positives = 698/1038 (68%), Gaps = 47/1038 (4%)

Query  3     FTEADFENSVIEIFRDNLGYTYRYGPEVDRDYHNP--------LYEEQLLSSLETINPKL  54
             F E D+E+  +E   ++LGY Y+ G E+      P        + +E+L  +L  IN+ +
Sbjct  5     FNEDDLEQVALE-WLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  55    PQTAIEEAVYKLKNIGTGTLVQKNFIFTDYLQNGIPVKYYDGKEER-SAIVYLVDYQNPA  113
                 IE A+  L    +  L+++N+ F + L NGI +  YD+  +    IV ++D++ P 
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  114   NNTFHVINQWTVVD-EVEKRPDIVIFVNGLPLVVVELKSPSREETDVSEAYRQLRNYLHD  172
             NN F  +NQ T+V+ +  KRPDIV+F+NGLP+VV+ELK+++ E  +V ++Y+QL  Y   
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  173   IPSLFVYNAFCVMSDHATSKAGTITADEDRYMEWKTVDGSYENTQ-YAAFDVLFEGIFEK  231
             IP LF +N   V SD   +KAG++TA+ DR+M W++ DG  E++   A++DVL++G+++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  232   ERFLDILKNFICFSKETPED-KKILGAYHQYFAVKKALQST--KEATLTDGKGGVFWHTQ  288
             E +LD+++ F+ F  +   +  KIL+AYHQY+AV+KA++ +    +   DGKGGV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  289   GSGKSLSMVFYAKQLREVLDSPTIVVITDRNDLDGQLFGQFSACED-----YLRQTPVQA  343
             GSGKSL+MVF++ +L ++L++PT+VV+TDRNDLD QL++ F    +      LRQTP QA
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  344   ESRADLKMLILNREVNGIIFTTMQKFEEYD-----APLSKRRNIVVIADEAHRSQYGFEE  398
             E+R +LK L L+ E  GI+FTTMQKFE  +     A+L+ R+N++V+ADEAHR+QYGF+ 
Sbjct  364   ETRKELKSL-LSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNA  422

Query  399   KVHPKTGKIRIGSARKVRDSLPNATYIGFTGTPVSLADRNTREIFGDYIDIYDMTQSVED  458
             K + K   I+ G A+ +RD+LPNAT++GFTGTPV+ +D+NT+ +FG+YID+YDMTQ+V D
Sbjct  423   KYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  459   NATVPIYYESRVVALKLDESILHEIDDEYDRVAEEAEEYIVEKSKHELGRLESILGAPET  518
              +TV IYYESRV++L+L +S+  ++D+ Y+ ++E+ EE + ++ K   +R+E++ GA   
Sbjct  483   GSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  519   ITTLCEDIIKHYETYRQYEQTGKAMIVAYSRPIAMKVYRRILELRPEW------KEKLGV  572
             + +L  DII+H+ET RQ    GK+MIV+ SR IA+ +Y  I+ L+PEW      K  + V
Sbjct  541   VEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  573   VMTSDNNDPEDWREVIGNKKHKENMAGKFKDNNDPLKIAIVVDMWLTGFDVPSLSTMYVY  632
             VMT+ ++DP   +  IG KK+++ +  + KD +D L++ IV DMWLTGFDVPS+ TMY+ 
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  633   KPMTGHNLMQAIARVNRVYKDKQGGLIVDYVGIAGALRKAMKDYTGRDRKNYGNPDIGKT  692
             KPM GHNLMQAIARVNRV+KDK GGLIVDYVGIA +L+ A+K+YT  D+ +    D +K+
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-TAIDTDKA  718

Query  693   AYPKFREKLEVCRDLFHGFDYSVFETGTDLERAKLITGGVNYISHPSKEEKRNAFVRESL  752
                 +  K +V +D++  +DYS F+++   ER   I+  ++Y+   + +E R+ F++   
Sbjct  719   VELMLL-KYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDE-RQRFIKTVT  776

Query  753   LLRHAMSLCRSLLDQNE-RFEAAYFEAVRTLLTRI-----EGKGKLSLREINNRINELLK  806
              L  A +LC +    +E   E A+F AV++ L ++     EGK + +  E++  IN+L+ 
Sbjct  777   ELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVS  836

Query  807   QSIRSEGVINLFSDV---KEKYSLFDPAFLSEIARMKEKNLAVELLKKLLMEQIRVYSRT  863
             QS+ +E+VI+++  +   +   S++   FL ++  +K+KN+AVELL++LL  Q++   +T
Sbjct  837   QSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKT  896

Query  864   NVVKSAKFSELLAEAMNSYINGMLTNEQVIEELLKIAKDMAEAHKEGEELGLNPEEMAFY  923
             N   S +FSE+L++++N Y +  +   +VIEEL+++AKD+ + ++ G+ELGLN++E+AFY
Sbjct  897   NATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFY  956

Query  924   DALTKPEAVKDFYENDELVAITKELTELLRKNKTIDWQKKETARAGMRRLVKRLLKQHKY  983
             DAL+  E+ K+   + EL AI+ ELT  ++ N  +DW K+++A+A MR  V+RLLK+  Y
Sbjct  957   DALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGY  1016

Query  984   PPEGMEDAVSTVLAQCEM  1001
             PP+    AV  V+ Q E+
Sbjct  1017  PPDLQKMAVEQVVEQAEL  1034

179) hsdR in NC_017451


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  663 bits (2507),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 447/1087 (42%), Positives = 731/1087 (68%), Gaps = 87/1087 (8%)

Query  3     NENDIEQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQLPE  62
             NE+D+EQ++L++LQSLG +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    SAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVEYQAPNSHGQNEQKIEMVRLVDFEH  122
               ++  +   T     +L+  N TF   L +G+ +E    + +++ +  +E+V+++DFE 
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIE----DYDDEGQSIVEIVKIIDFEY  121

Query  123   WENNRFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETY  182
              +NN F+AVNQL I +    KR PDI+ F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETY
Sbjct  122   PQNNDFLAVNQLTIVNGDYKKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  183   KDEIAELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVDEKNKSVRLYFDDELQSLLN  242
             K  I++LF +N+ L+ SDGI ++ GSL+A+++RF  W+  D +  S        L+ L++
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIH  238

Query  243   GLLKPEDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVDSTIWATSEKGDRRIGV  302
             G+L+PE LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AVD ++ A+SE+GD + GV
Sbjct  239   GMLNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGV  298

Query  303   MWHTQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLI  357
             +WHTQGSGKS++M+F++GKL+    L+NPT+VVVTDRNDLD QL+ TF      SGK+L+
Sbjct  299   IWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLL  356

Query  358   KQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPVLNERSNIIVISDEAHR  417
             +QTP+Q E R +L+ LL+  E GG+ FTT+QKF  +++E+  + L ER N+IV++DEAHR
Sbjct  357   RQTPKQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHR  415

Query  418   SQYGFTQKLHN--GKFQAGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYD  475
             +QYGF  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD
Sbjct  416   TQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYD  475

Query  476   LQDAVEDGATVPIVYEAR--QIKLAENANHDELFAEIDELLEGEKNPKLRLREK------  527
             + +AV DG+TV I YE+R   ++L+++ + DE + +I E  + E + K RL+ K      
Sbjct  476   MTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIEA  533

Query  528   LLGSEARLHDLAVDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNQIIALHPEWHSDNIN  587
             L G+ +R++ LA D++QHF  R++ + +K+M+V  SR+I VDLY++II L PEWHSD+ +
Sbjct  534   LAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDD  593

Query  588   EGAIKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCC  647
              G IK+VMTGS+SD++  Q+H+ +K+ ++ LE+R KD +D L++VIVRDMWLTGFD P  
Sbjct  594   KGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSM  653

Query  648   NTMYIDKPMQGHNLMQAIARVNRVFANKSRENGGLIVDYVGLAEELRAATQQYTNSTGKG  707
             +TMYIDKPM+GHNLMQAIARVNRVF +K+   GGLIVDYVG+AE L+ A ++YT+S    
Sbjct  654   HTMYIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD---  707

Query  708   QLAEDVQSVFFKMKEQLEFIRTLFATPIEGKTFDVQIALEKDNPNDLLMAIRFAANHIL-  766
                                              + Q A++ D++ +L++ +++   + + 
Sbjct  708   ---------------------------------QAQTAIDTDKAVELML-LKYDVIQDML  733

Query  767   -SLDQLSFDGKAHEQHWFNKKET--------EPRKKAFLKAAGLVKKGYMLCGTLAEVEP  817
              +LD   F++    ++ +   +T        E  ++ F+K+   + K++ LC+T +  + 
Sbjct  734   YNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQE  793

Query  818   YNQEIAFYDAVRAILTK--------REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLL  869
              N+EIAF+ AV+A L K        + +K  +  E +I  ++LV+Q+V +E+VID+++ L
Sbjct  794   LNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI--NQLVSQSVVTEDVIDVYQTL  851

Query  870   EKPQPQISLLSEEFLQTVKNSPTKNLWVSAMERYLASEIKVKSGTNLTLQKDFERRLKEA  929
                QP++S+LS++FL+ V     KN+ V  ++R L +++K    TN T+ K F   L ++
Sbjct  852   GLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNS  911

Query  930   LNQYHNHNLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGD  989
             +N+Y+++++    +++EL+++++D+++    G+ LGL  +E+AFY+AL+ +++AK+ MGD
Sbjct  912   INKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGD  971

Query  990   EVLSKLAKEITETLRKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIKQ  1049
               L  +A E+T T++ ++ +DW  +++ +A++R+ VRR L+KY YPPD Q  AV  V+ Q
Sbjct  972   KELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQ  1031

Query  1050  AEEIAED  1056
             AE +A++
Sbjct  1032  AELMANN  1038

180) UMN179_00648 in NC_015460


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  663 bits (2507),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/1067 (41%), Positives = 713/1067 (67%), Gaps = 52/1067 (4%)

Query  2     HINESTIEHQAIEQLQSLGWQYAYGKEVLPNEAYPWRESRNEVVLKPLLLQSLQKINPHL  61
             ++NE  +E+ A+E LQSLG +Y  G+E+      P R S ++VVL   L ++L+KIN+++
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  62    PEETLQEVVSSVCKSDISSVEERNRQFYQLLKQGVKV-HYQQNGQEKNDVALLVDFKHPE  120
                 ++  +  +     +++ E N  F + L +G+ + +Y+++GQ   ++  ++DF  P+
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  121   NNLFYVINQLEIQGIKGKRIPDILCFVNGLPLVIFELKNPLDVKADLERAFNQLQTYKKE  180
             NN F  +NQL I     K+ PDI+ F+NGLP+V++ELKN+ +   ++E +++QL+TYK  
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  181   IEELFVFNQMMLISDGTAARVGSLTADLQRFSPWKVVDESNRSRRLIFEDELSGVLQGLF  240
             I +LF FN++++ SDG  ++ GSLTA+ +RF  W+  D    S   +    L  +++G++
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGML  241

Query  241   SPQVLLDYLHDFIVFENDSKGRTIKKIAAYHQFYAVNAAVEASI-RAVENNSRKIGVVWH  299
             +P+ LLD ++ F++F++D+KG+  K +AAYHQ+YAVN AV+ ++  + E+   K GV+WH
Sbjct  242   NPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWH  301

Query  300   TQGSGKSLSMLFYAGKLISQPELKNPTIVVVTDRKDLDGQLFTTF----Sqdqditqqpp  355
             TQGSGKSL+M+F++GKLI    L+NPT+VVVTDR+DLD QL++TF    ++      +  
Sbjct  302   TQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQT  359

Query  356   iqADGrealreelakreSGGIIFTTIQKFGLREGEADHPVLNSRHNIIVISDEAHRSQYG  415
              +          L   ESGGI+FTT+QKF   + E+  + L  R N+IV++DEAHR+QYG
Sbjct  360   PKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  416   FAQKIN---QGMYREGYAKYLRTALPNAGFIGFTGTPISLEDKDTQEVFGDYISIYDIYD  472
             F  K +   +G+ + GYAKYLR ALPNA F+GFTGTP++  DK+TQ VFG+YI +YD+ +
Sbjct  420   FNAKYDDKGEGI-KYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  473   AVEDGATVPIIYEARQIPLTESSKYSLAMReaenllddddeenFQFRLR------EQLMG  526
             AV DG+TV I YE+R IPL  +   SL + EA N + +D+EE+ + RL+      E L G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQ--SLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  527   TEQRLNRLAEDLVNHFEIRNTLAEGKAMVVVMSRRICVKLYNEIIKLRPEWHSDDVHQGA  586
             +  R++ LA D+++HFE R+    GK+M+V MSRRI V LY+EII+L+PEWHSDD ++G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  587   IKIMMTGNAGDPPEMQAHIYSSQDKKILEKRFKDAEDPLKIVIVRDMWLTGFDAPCCHTM  646
             IK++MTG+++DP   Q HI + + +++LEKR KD +D L++VIVRDMWLTGFD P  HTM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTM  656

Query  647   YIDKPMQGHNLMQAIARVNRVFRNKSKDNGGLIVDYVGLAEELKQATIQYTNSGGKDRVK  706
             YIDKPM+GHNLMQAIARVNRVF++K+   GGLIVDYVG+AE LK+A  +YT+S ++ +  
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTES-DQAQTA  712

Query  707   TDIDQVFQ-KMLEYLDIIKGQFATPVDGKVFPLG-EALKINQQDALIKAILQAANHIVAL  764
              D D+  +  +L Y           +++ ++ L+   ++ +++     +I ++ + +++L
Sbjct  713   IDTDKAVELMLLKY---------DVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGL  763

Query  765   DRVNQQADDSSDKTPRKNAFLQAVRQAKKGLSLCGAMEKVQPYRQQLAFFDAVRATIIK-  823
                   ++D  ++      F+++V +  K+++LC++    Q   +++AFF AV+A ++K 
Sbjct  764   ------GEDERQR------FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKL  811

Query  824   --QERQAPSSASPQERQLKLTALLNQAVHSEEAIDLFALIGEKRPDISLLSEEFMQMVKD  881
                 +++ +  +P E +  +  L++Q+V +E+ ID++  +G  +PD+S+LS++F++ V +
Sbjct  812   LQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEG  871

Query  882   SDIKDLWLTAIEGYLKSEIREKSANNLATQKRFEEKLKEAMNRYHNHNLTVIDIIKELLA  941
                K++ +  ++  LK++++     N +  KRF E L +++N+Y+++++    +I EL+ 
Sbjct  872   LKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQ  931

Query  942   MAKEFEQQLAKGQELGLSDTELAFYEALIRNQSAVEVMGDQALIPLAKEITEQLRKSVTV  1001
             +AK++ Q+  +G+ELGL+  E+AFY+AL  +++A E MGD+ L ++A E+T  ++ ++ V
Sbjct  932   LAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGV  991

Query  1002  DWQYKESVRAKMRRLIRRALSKYKYPPDLEKEAVEFVLQQAEVVAEQ  1048
             DW  ++S +AKMR  +RR L KY YPPDL+K AVE V++QAE++A++
Sbjct  992   DWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

181) Desaf_3450 in NC_016629


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  660 bits (2494),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/1037 (42%), Positives = 686/1037 (67%), Gaps = 55/1037 (5%)

Query  20    EQLGYSIRSGKEVDSDV---EREHTAAIFLRQRIDDAAQHLSPQITAWARQQALKHLQKP  76
             + LGY  + G+E+       ER     + L++R++ A + ++++I ++  ++AL +L   
Sbjct  19    QSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLE  78

Query  77    EYSTLAQNNRWFHTLLTEGVEVE-YRDPASGETRGDRARLIDFNHPRQNDLLVVRQLAVT  135
               + L +NN  FH  L +G+E+E Y D   G++  +  ++IDF+ P++ND+L V QL++ 
Sbjct  79    KSPNLLENNLTFHENLINGIEIEDYDD--EGQSIVEIVKIIDFEYPQNNDFLAVNQLTIV  136

Query  136   GLSGKLIRPDLTVFLNGLPIAVIELKDPTNTGADLNMAIGQLRD-KMQIAPDLFVPNLLL  194
                 K  RPD+ +F+NGLPI VIELK++TN   +++ +  QL   KM+I P+LF  N +L
Sbjct  137   NGDYK-KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI-PQLFTFNEVL  194

Query  195   VVSDGLLTRVGSITSGISRFTPWRSAEG------GKPTLEALIHELFEPSMLLDYLRTCI  248
             V SDG+ T+ GS+T+   RF  WRS +G      G ++L+ LIH +++P  LLD +R  +
Sbjct  195   VTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYFV  254

Query  249   TFEEDERGGIAKKIAGYHQFRAVRNTRASVLAHLKSPIGKGDGRGGVVWHTQGSGKSLTM  308
              F++D +G I+K +A+YHQ+ AV ++    L    ++  +GDG+GGV+WHTQGSGKSLTM
Sbjct  255   LFQDDGKGHISKILAAYHQYYAVNKAVDRALL---ASSEQGDGKGGVIWHTQGSGKSLTM  311

Query  309   LMLAGALVREPVMANPTIVMVTDRNDLDDQLFGTFA-----AGRALLRQEPIQAESREHL  363
             + ++G L++  ++ NPT+V+VTDRNDLD+QL++TF      +G++LLRQ P QAE+R +L
Sbjct  312   VFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKEL  369

Query  364   KELLDRAAGGVVFTTIHKFTDAH-----GVISERANVVVMADEAHRSQYGLIE-------  411
             K LL   +GG+VFTT++KF   +     + ++ER NV+VMADEAHR+QYG+         
Sbjct  370   KSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDDKGE  429

Query  412   ----GGARWMREALPNATFVGFTGTPLERDDKNTIHVFGEYSDVYDLRQAVEDGATKPLY  467
                 G A+ +R+ALPNATFVGFTGTP+   DKNT  VFG+Y DVYD+ QAV DG+T  +Y
Sbjct  430   GIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIY  489

Query  468   YESRIVKLTVDGaraaaaeaeleqavkaDASGEEVADQIRI---PLEALVGAQERVARLA  524
             YESR++ L +    + + + +      ++   E+V ++++     +EAL GA+ RV  LA
Sbjct  490   YESRVIPLNL----PQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALA  545

Query  525   AFIVEHWEKRRAAMEGKAMIVTMSRDIAARLYEGIKAFRPDWHDPDDERGVMKVIITERG  584
               I++H E R+ AM GK+MIVTMSR IA  LY+ I  ++P+WH  DD++GV+KV++T  +
Sbjct  546   KDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSS  605

Query  585   NDAEPLRSHVRPKAARKRLAERFKSPDDDFRLVIVCNMWLTGFDCPPAHTMYLDKPLASH  644
             +D+ +++ H+ PK  R+ L  R K  DD+++LVIV +MWLTGFD P+ HTMY+DKP+ +H
Sbjct  606   SDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGH  665

Query  645   NLMQAIARVNRVYGDKPGGLIVdllgladqladalaTYTQAGGTGEAVKQVQDEAVPAMQ  704
             NLMQAIARVNRV+ DKPGGLIVD +G+A+ L +AL  YT+++ +  A+    D AV  M 
Sbjct  666   NLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDT--DKAVELML  723

Query  705   TAFEKLRAFFHGCAYEAALDTEPKEVLPIYL--AAIDHVFA-QQDGWKRLRALVKELSAA  761
               ++ ++  +    Y + ++++ K     Y    ++D V++  +D ++R+   V EL+ A
Sbjct  724   LKYDVIQDMLYNLDY-SKFNSDKKSE-RYYTISNTMDYVIGLGEDERQRFIKTVTELGKA  781

Query  762   FALAVPRPETEKVVDHLAFFQRVTAMIRKKLTDESGSAMKAHQRDVDAAVRQIIGGAVEA  821
             FAL    P ++ + D++AFF+ V A + K L     +  +    +V+A + Q+++ +V +
Sbjct  782   FALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVT  841

Query  822   DQVIDLFAAAGLDEARLDILSDEFLQRVAALEQKNLALETLRKLLTDQIRITERMNIVQS  881
             ++VID++ + GL+++ L ILSD+FL+ V +L QKN+A+E L +LL +Q++   + N   S
Sbjct  842   EDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVS  901

Query  882   KKFREALEDAMLRYTNKAITTAEMISRLLDLAKDLRNAQRRGEDQGLSREEAAFYDALAE  941
             K+F E L +++ +Y +++I T+ +I  L++LAKD+++ Q+RG++ GL+ +E AFYDALA 
Sbjct  902   KRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALAS  961

Query  942   NGSAREVMKSDTLRLMARELTEMIKKMPKLDWTQRESVRAGLRRSVRRLLAKYGYPPDLA  1001
             + +A+E M    LR +A+ELT  +K    +DW++R+S +A +R +VRRLL KYGYPPDL 
Sbjct  962   HETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQ  1021

Query  1002  EDATQLVLRQAELSTTN  1018
               A + V+ QAEL + N
Sbjct  1022  KMAVEQVVEQAELMANN  1038

182) hsdR in NC_000907


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  659 bits (2491),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 448/1080 (42%), Positives = 722/1080 (67%), Gaps = 78/1080 (7%)

Query  3     NENDIEQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQLPE  62
             NE+D+EQ++L++LQSLG +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    SAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVE-YTQNGEQKIEMVRLVDFEHWGNN  121
               ++  +   T     +L+  N TF   L +G+ +E Y ++G+  +E+V+++DFE   NN
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  122   RFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDEI  181
              F+AVNQL I +    KR PDI+ F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETYK  I
Sbjct  126   DFLAVNQLTIVNGDYKKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  182   AELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQSLLNGLMQ  241
             ++LF +N+ L+ SDGI ++ GSL+A+++RF  W+  D +  S+       L+ L++G+++
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIHGMLN  242

Query  242   PEDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVDSTIWATSEKGDRRIGVMWHT  301
             PE LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AVD ++ A+SE+GD + GV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  302   QGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLIKQTP  356
             QGSGKS++M+F++GKL+    L+NPT+VVVTDRNDLD QL+ TF      SGK+L++QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  357   QQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERNNIIVISDEAHRSQYG  416
             +Q E R +L+ LL+  E GG+ FTT+QKF  +++E+  + L ER+N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYG  419

Query  417   FTQKLHN--GKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQDA  474
             F  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIVYDDARQIRLN---KKDHDALFAEIDALLEEEPSTSLRLR----EKLLGSQ  527
             V DG+TV I Y+ +R I LN     D D  + +I    EE+    L+ +    E L G++
Sbjct  480   VADGSTVKIYYE-SRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  528   ERLIELAADFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNQIIALHPEWHSDNINEGAIK  587
              R+  LA D++QHF  R++ + +K+M+V  SR+I VDLY++II L PEWHSD+ + G IK
Sbjct  539   PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  588   IVMTGSASDTPEMQKHIYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCCNTMYL  647
             +VMTGS+SD    Q+HI +K+ ++ LE+R KD +D L++VIVRDMWLTGFD P  +TMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  648   DKPMKGHNLMQAIARVNRVFANKSRENGGLIVDYVGLAKELRAATQQYTNSTGKGQLAED  707
             DKPMKGHNLMQAIARVNRVF +K+   GGLIVDYVG+A  L+ A ++YT+S         
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD--------  707

Query  708   VQSVFFKMKEQLEFIRTLFATPIEGKTFDVQAALEKDNPNDLLMAIRFAANHIL--SLDQ  765
                                         + Q+A++ D++ +L++ +++   + +  +LD 
Sbjct  708   ----------------------------QAQTAIDTDKAVELML-LKYDVIQDMLYNLDY  738

Query  766   LSFDGKAHEQHWFNKKET--------EPRKKAFLKTAGLVKKGYMLCGTLAEVEPYNQEI  817
               F++    ++ +   +T        E  ++ F+KT   + K++ LC+T +  +  N+EI
Sbjct  739   SKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEI  798

Query  818   AFYDAVRAILTK-----REQKG-TGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQI  871
             AF+ AV+A L K     +E K      E +  +++LV+Q+V +E+VID+++ L   QP++
Sbjct  799   AFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDL  858

Query  872   SLLSEEFLQTVKNSPTKNLWVSAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQYHNH  931
             S+LS++FL+ V     KN+ V  ++R L +++K    TN T+ K F   L +++N+Y+++
Sbjct  859   SILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSR  918

Query  932   NLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSKLA  991
             ++    +++EL+++++D+++    G+ LGL  +E+AFY+AL+ +++AK+ MGD  L  +A
Sbjct  919   SIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIA  978

Query  992   KEITETLRKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIKQAEEIAED  1051
              E+T T++ ++ +DW  +++ +A++R+ VRR L+KY YPPD Q  AV  V+ QAE +A++
Sbjct  979   HELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANN  1038

183) SFBM_0021 in NC_015913


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  656 bits (2480),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 418/1025 (41%), Positives = 690/1025 (68%), Gaps = 51/1025 (4%)

Query  18    DTLSYNYLYGPDIS--------RDYSDAIYMDELTPSLKRINKDIPQSAINECINKLRNI  69
             ++L+Y+Y  G +IS        +   D +  + L  +L++IN DI    I+  ++ L   
Sbjct  19    QSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLE  78

Query  70    EGGTLLDKNRIFMNYLQNGVSVNCFNNGNQESY-LVKLADYNCLEKNTFTIVNQWTIVEN  128
              +  LL++N  F + L NG+ ++ +++  Q    +VK+ D++  ++N F  VNQ TIV+ 
Sbjct  79    KSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNG  138

Query  129   S-EKRPDLILFLNGIPIVVFELKSPSREETSVSEAYNQLRNYMYEIPSLFNYNAFLVMSD  187
                KRPD++LF+NG+PIVV+ELK+++ E  +V ++Y+QL  Y   IP LF +N  LV SD
Sbjct  139   DYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSD  198

Query  188   LAVSKAGTITSSEDRFMEWKTKDGSYENT-SYAQFDTFIEGMFDKARLLDIIKNFICFSE  246
                +KAG++T++ DRFM W++KDG  E++ + A +D +I+GM++   LLD+I+ F+ F +
Sbjct  199   GINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQD  258

Query  247   N-----SKIFSAYHQYFAVRKAIKSTL--NALESDGKAGVFWHTQGSGKSLSMLFYAHLL  299
             +     SKI++AYHQY+AV KA+  +L  ++ ++DGK+GV+WHTQGSGKSL+M+F++  L
Sbjct  259   DGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKL  318

Query  300   CETINSPTILVLTDRNDLDDQLFSQFSKCKD-----FLYQVPNKAESREHLKKLLAGREA  354
              + +N+PT++V+TDRNDLD+QL+S F K K+     +L Q P++AE+R +LK LL+  E+
Sbjct  319   IQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ES  377

Query  355   NGIIFSTIQKFEE-----STEPLSERKNIIIMADEAHRGQYGLDEKVDKNTGRISFGIAR  409
              GI+F+T+QKFE      +  +L+ERKN+I+MADEAHR QYG++ K D +   I +G A+
Sbjct  378   GGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAK  437

Query  410   IIRDNFPNATYIGFTGTPISLKDRSTIEVFGNYIDIYDMTQAVEDGATRPVYYESRVIKL  469
              +RD +PNAT++GFTGTP++  D++T  VFGNYID+YDMTQAV DG+T  +YYESRVI L
Sbjct  438   YLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPL  497

Query  470   NLDNSILEMIDKEYEILSNNAEIHAIEKSKKELGRLESILGADQTIDSLTRDIVMHYEEN  529
             NL +S L++ D  Y+ ++++ E +  ++ K   +R+E++ GA   +++L++DI+ H+E  
Sbjct  498   NLPQS-LDL-DEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFE-T  554

Query  530   RQYELTGKAMIVAYSRPIAMKIYHKILELKPEW----EEK--VYVVMTSGNNDPEDWRKI  583
             RQ  + GK+MIV+ SR IA+ +Y+ I+ LKPEW    ++K  + VVMT++++DP   ++ 
Sbjct  555   RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRH  614

Query  584   IGNKRYKDELAKKFKDNGSSFKIAIVVDMWLTGFDVPSLATMYIYKPMSGHNLMQAIARV  643
             IG K+ ++ L K+ KD +  +++ IV DMWLTGFDVPS+ TMYI KPM GHNLMQAIARV
Sbjct  615   IGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARV  674

Query  644   NRVYKNKEGGLIVDYIGIAGALKKAMSDYTKRDKVNYGESDISKIAYPKFIEKLEVCRAL  703
             NRV+K+K GGLIVDY+GIA +LK A+ +YT  D+ +    D  K     ++ K +V + +
Sbjct  675   NRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-TAIDTDKAVELMLL-KYDVIQDM  732

Query  704   LHGFDYSSFMLKSLTDLTRAKLISGGVNFLSDPSRKEDKKFYIKESLLLRQSVSLCRSIL  763
             L  +DYS F     ++  R   IS  ++++ + +  E ++F IK    L ++ +LC +  
Sbjct  733   LYNLDYSKFNSDKKSE--RYYTISNTMDYVIGLGEDERQRF-IKTVTELGKAFALCATEP  789

Query  764   TKDQ-RLESAYFEALRT----LLTRITGENKPLSLKDINKHINDLLKESIKSDGIINLFS  818
             T ++   E A+F A+++    LL      +   +  +++ +IN+L+ +S+ ++++I+++ 
Sbjct  790   TAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQ  849

Query  819   DIDI---GVSIFDEKFLEEVSNMKEKNLAVEMLKKLLNEQISVYKRNNIVKSQKFSEMLN  875
              +++   ++SI+ + FL +V  +K+KN+AVE+L++LL+ Q+    + N   S++FSEML 
Sbjct  850   TLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLG  909

Query  876   KAMRLYINGMITNEEIIEELLKMARDISRSSEEAESLGLSDEEMAFYDALTRPEAIKDFY  935
             +++  Y +  I    +IEEL+++A+DI +  + ++ LGL+ +E+AFYDAL+  E+ K+  
Sbjct  910   NSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAM  969

Query  936   TNQELVALTRMLTDSLRRSRTIDWQKKDTARAKMRRMVRKLLKDYDYPPKGLEDAVATVL  995
              ++EL A+++ LT +++ +  +DW K+D+A+AKMR  VR+LLK Y+YPP     AV  V+
Sbjct  970   GDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVV  1029

Query  996   SQCEI  1000
              Q E+
Sbjct  1030  EQAEL  1034

184) hsdR in NC_017294


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  656 bits (2480),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 418/1025 (41%), Positives = 690/1025 (68%), Gaps = 51/1025 (4%)

Query  18    DTLSYNYLYGPDIS--------RDYSDAIYMDELTPSLKRINKDIPQSAINECINKLRNI  69
             ++L+Y+Y  G +IS        +   D +  + L  +L++IN DI    I+  ++ L   
Sbjct  19    QSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLE  78

Query  70    EGGTLLDKNRIFMNYLQNGVSVNCFNNGNQESY-LVKLADYNCLEKNTFTIVNQWTIVEN  128
              +  LL++N  F + L NG+ ++ +++  Q    +VK+ D++  ++N F  VNQ TIV+ 
Sbjct  79    KSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNG  138

Query  129   S-EKRPDLILFLNGIPIVVFELKSPSREETSVSEAYNQLRNYMYEIPSLFNYNAFLVMSD  187
                KRPD++LF+NG+PIVV+ELK+++ E  +V ++Y+QL  Y   IP LF +N  LV SD
Sbjct  139   DYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSD  198

Query  188   LAVSKAGTITSSEDRFMEWKTKDGSYENT-SYAQFDTFIEGMFDKARLLDIIKNFICFSE  246
                +KAG++T++ DRFM W++KDG  E++ + A +D +I+GM++   LLD+I+ F+ F +
Sbjct  199   GINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPETLLDLIRYFVLFQD  258

Query  247   N-----SKIFSAYHQYFAVRKAIKSTL--NALESDGKAGVFWHTQGSGKSLSMLFYAHLL  299
             +     SKI++AYHQY+AV KA+  +L  ++ ++DGK+GV+WHTQGSGKSL+M+F++  L
Sbjct  259   DGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKL  318

Query  300   CETINSPTILVLTDRNDLDDQLFSQFSKCKD-----FLYQVPNKAESREHLKKLLAGREA  354
              + +N+PT++V+TDRNDLD+QL+S F K K+     +L Q P++AE+R +LK LL+  E+
Sbjct  319   IQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ES  377

Query  355   NGIIFSTIQKFEE-----STEPLSERKNIIIMADEAHRGQYGLDEKVDKNTGRISFGIAR  409
              GI+F+T+QKFE      +  +L+ERKN+I+MADEAHR QYG++ K D +   I +G A+
Sbjct  378   GGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAK  437

Query  410   IIRDNFPNATYIGFTGTPISLKDRSTIEVFGNYIDIYDMTQAVEDGATRPVYYESRVIKL  469
              +RD +PNAT++GFTGTP++  D++T  VFGNYID+YDMTQAV DG+T  +YYESRVI L
Sbjct  438   YLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPL  497

Query  470   NLDNSILEMIDKEYEILSNNAEIHAIEKSKKELGRLESILGADQTIDSLTRDIVMHYEEN  529
             NL +S L++ D  Y+ ++++ E +  ++ K   +R+E++ GA   +++L++DI+ H+E  
Sbjct  498   NLPQS-LDL-DEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFE-T  554

Query  530   RQYELTGKAMIVAYSRPIAMKIYHKILELKPEW----EEK--VYVVMTSGNNDPEDWRKI  583
             RQ  + GK+MIV+ SR IA+ +Y+ I+ LKPEW    ++K  + VVMT++++DP   ++ 
Sbjct  555   RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRH  614

Query  584   IGNKRYKDELAKKFKDNGSSFKIAIVVDMWLTGFDVPSLATMYIYKPMSGHNLMQAIARV  643
             IG K+ ++ L K+ KD +  +++ IV DMWLTGFDVPS+ TMYI KPM GHNLMQAIARV
Sbjct  615   IGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARV  674

Query  644   NRVYKNKEGGLIVDYIGIAGALKKAMSDYTKRDKVNYGESDISKIAYPKFIEKLEVCRAL  703
             NRV+K+K GGLIVDY+GIA +LK A+ +YT  D+ +    D  K     ++ K +V + +
Sbjct  675   NRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-TAIDTDKAVELMLL-KYDVIQDM  732

Query  704   LHGFDYSSFMLKSLTDLTRAKLISGGVNFLSDPSRKEDKKFYIKESLLLRQSVSLCRSIL  763
             L  +DYS F     ++  R   IS  ++++ + +  E ++F IK    L ++ +LC +  
Sbjct  733   LYNLDYSKFNSDKKSE--RYYTISNTMDYVIGLGEDERQRF-IKTVTELGKAFALCATEP  789

Query  764   TKDQ-RLESAYFEALRT----LLTRITGENKPLSLKDINKHINDLLKESIKSDGIINLFS  818
             T ++   E A+F A+++    LL      +   +  +++ +IN+L+ +S+ ++++I+++ 
Sbjct  790   TAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQ  849

Query  819   DIDI---GVSIFDEKFLEEVSNMKEKNLAVEMLKKLLNEQISVYKRNNIVKSQKFSEMLN  875
              +++   ++SI+ + FL +V  +K+KN+AVE+L++LL+ Q+    + N   S++FSEML 
Sbjct  850   TLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLG  909

Query  876   KAMRLYINGMITNEEIIEELLKMARDISRSSEEAESLGLSDEEMAFYDALTRPEAIKDFY  935
             +++  Y +  I    +IEEL+++A+DI +  + ++ LGL+ +E+AFYDAL+  E+ K+  
Sbjct  910   NSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAM  969

Query  936   TNQELVALTRMLTDSLRRSRTIDWQKKDTARAKMRRMVRKLLKDYDYPPKGLEDAVATVL  995
              ++EL A+++ LT +++ +  +DW K+D+A+AKMR  VR+LLK Y+YPP     AV  V+
Sbjct  970   GDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVV  1029

Query  996   SQCEI  1000
              Q E+
Sbjct  1030  EQAEL  1034

185) HICON_18090 in NC_014922


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  655 bits (2476),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 447/1087 (42%), Positives = 734/1087 (68%), Gaps = 87/1087 (8%)

Query  9     NENDIEQLTLQRLQPLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQLPE  68
             NE+D+EQ++L++LQ+LG +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  69    SAVDSVVKSATKSDIGDLVVRNQAFYKLLRDGVRVEYQAPNSHGQNEQKIEMARLVDFEH  128
               ++  +   T     +L+  N +F   L +G+ +E    + +++ +  +E+ +++DFE 
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIE----DYDDEGQSIVEIVKIIDFEY  121

Query  129   WGNNRFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETY  188
               NN F+AVNQL I +    KR PDI+ F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETY
Sbjct  122   PQNNDFLAVNQLTIVNGDYKKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  189   KDEIAELFVYNQALIISDGIVALLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQSLLN  248
             K  I++LF +N+ L+ SDGI +  GSL+A+++RF  W+  D +  S+       L+ L++
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIH  238

Query  249   GLLKPEDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVDSTIWATSEQGDRRIGV  308
             G+L+PE LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AVD ++ A+SEQGD + GV
Sbjct  239   GMLNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGV  298

Query  309   MWHTQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLI  363
             +WHTQGSGKS++M+F++GKL+    L+NPT+VVVTDRNDLD QL+ TF      SGK+L+
Sbjct  299   IWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLL  356

Query  364   KQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERSNIIVISDEAHR  423
             +QTP+Q E R +L+ LL+  E GG+ FTT+QKF  +++E+  + L ER N+IV++DEAHR
Sbjct  357   RQTPKQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHR  415

Query  424   SQYGFTQKLHN--GKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYD  481
             +QYGF  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD
Sbjct  416   TQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYD  475

Query  482   LQDAVEDGATVPIVYEARQI--KLAENANHDELFAEIDELLEGEENPKLRLREK------  533
             + +AV DG+TV I YE+R I  +L+++ + DE + +I E  + EE+ K RL+ K      
Sbjct  476   MTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIEA  533

Query  534   LLGSEARLHDLAVDFVQHFAKRNEvvdsksmmvvssRQICVDLYNQIIALHPEWHSDNIN  593
             L G+ +R++ LA D++QHF  R++ + +K+M+V  SR+I VDLY++II L PEWHSD+ +
Sbjct  534   LAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDD  593

Query  594   EGAIKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCC  653
              G IK+VMTGS+SD++  Q+H+ +K+ ++ LE+R KD +D L++VIVRDMWLTGFD P  
Sbjct  594   KGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSM  653

Query  654   NTMYLDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELKDATQQYTNSQGKG  713
             +TMY+DKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVGIA+ LK+A ++YT+S+   
Sbjct  654   HTMYIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD---  707

Query  714   KLADSVIDVFFKMKEHLEVIRSLFTTPVEGKTFDVQTVLEKDNPNELLMAIRFAANHIL-  772
                                              + QT ++ D++ EL++ +++   + + 
Sbjct  708   ---------------------------------QAQTAIDTDKAVELML-LKYDVIQDML  733

Query  773   -SLDQLSFDGKAHEQHWFNKKET--------EPRKKAFLKAAGLVKKGYMLCGALAEVEP  823
              +LD   F++    ++ +   +T        E  ++ F+K+   + K++ LC++ +  + 
Sbjct  734   YNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQE  793

Query  824   YNQEIAFYDAVRAILTK--------REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLL  875
              N+EIAF+ AV+A L K        + +K  +  E +I  ++LV+Q+V +E+VID+++ L
Sbjct  794   LNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI--NQLVSQSVVTEDVIDVYQTL  851

Query  876   EKPQPQISLLSEEFLQTVKNSPTKNLWVTAMERYLASEIKVKSGTNLTLQKDFEQRLKEA  935
                QP++S+LS++FL+ V     KN+ V  ++R L +++K    TN T+ K F + L ++
Sbjct  852   GLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNS  911

Query  936   LNQYHNHNLTVVEILDQLFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGD  995
             +N+Y+++++    ++++L+++++D+++    G+ LGL  +E+AFY+AL+ +++AK+ MGD
Sbjct  912   INKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGD  971

Query  996   EVLSKLAKEITETLRKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIKQ  1055
               L  +A E+T T++ ++ +DW  +++ +A++R+ VRR L+KY YPPD Q  AV  V+ Q
Sbjct  972   KELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQ  1031

Query  1056  AEEIAED  1062
             AE +A++
Sbjct  1032  AELMANN  1038

186) HMPREF0389_01038 in NC_016630


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  651 bits (2459),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 432/1045 (42%), Positives = 700/1045 (67%), Gaps = 51/1045 (4%)

Query  4     FIEASYENSIIELFQNNLGYEYVYGPDIERDFYSP--------LYEDVLVDSLYRLNRGL  55
             F E   E+  +E +Q+ LGY+Y  G +I     +P        + ++ L  +L ++N ++
Sbjct  5     FNEDDLEQVALEWLQS-LGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  56    PDNAIQDALYKLRNFENGELVQKNAIFMDYLQNGIPVR-YFVSGEERSSIIYLVDYKNVE  114
                 I+ AL  L    + +L+++N  F + L NGI +  Y   G+    I+ ++D+   +
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  115   NNSFIVANQWTFIENS-NKRPDVILFLNGLPVVLVELKSPSREETDASEAYRQLRNYMHE  173
             NN F+  NQ T+++   +KRPD++LF+NGLP+V++ELK+++ E  +  ++Y+QL  Y   
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  174   IPSMFIYNAICVMSDQLISKAGTITSGEDRFMEWKTKDGNYENTQ-YAQFDTFFEGMFQK  232
             IP +F +N + V SD + +KAG++T+  DRFM W++KDG+ E++   A +D +++GM++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  233   ERLLDIIKNFICFSNEGINTF-KILAGYHQYFAVRKAIEST--KHAIITDGKGGVFWHTQ  289
             E LLD+I+ F+ F ++G   + KILA+YHQY+AV KA++ +    +   DGKGGV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  290   GSGKSLSMVFYAHLLQEALESPTIVVLTDRNDLDDQLYSQFAKCKD-----FLRQEPLQA  344
             GSGKSL+MVF++  L + L++PT+VV+TDRNDLD+QLYS F K K+     +LRQ P QA
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  345   ESRENLKTLLAGRKANGIIFTTMQKFEESNE-----PLSERRNIIVMADEAHRGQYGLTE  399
             E+R +LK+LL+   + GI+FTTMQKFE  ++     +L+ER+N+IVMADEAHR QYG+  
Sbjct  364   ETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNA  422

Query  400   KIKITKNEDGDEVAKRIIGTARIIRNTLPNATYIGFTGTPISAKDRSTREVFGDYIDIYD  459
             K     ++ G+ +     G A+ +R++LPNAT++GFTGTP+++ D++T+ VFG+YID+YD
Sbjct  423   KY----DDKGEGIK---YGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYD  475

Query  460   MTQAVEDGATRPVYYESRVIKLNLDETTLKLIDAEYDLMALNADDEVIEKSKRELGQMEA  519
             MTQAV DG+T  +YYESRVI LNL ++ L L D  Y+ ++ + +++V ++ K   +++EA
Sbjct  476   MTQAVADGSTVKIYYESRVIPLNLPQS-LDL-DEAYNDITEDQEEDVKQRLKSKWSRIEA  533

Query  520   VLGNDNTINSLVCDIIDHYENNRENLLTGKAMIVAYSRPIAMKIYKKILKLRPAWTEK--  577
             + G    +++L  DII+H+E  R++ + GK+MIV+ SR IA+ +Y  I++L+P W     
Sbjct  534   LAGAKPRVEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD  592

Query  578   ----VEVVMTSGNNDPEEWRQIIGNKHHKNELAKKFKDNSSLMKIAIVVDMWLTGFDVPS  633
                 + VVMT++++DP   ++ IG K ++N L K+ KD    +++ IV DMWLTGFDVPS
Sbjct  593   DKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPS  652

Query  634   LATMYVYKPMSGHNLMQAIARVNRVFQDKEGGLVVDYVGIATALKQAMNDYTLRDKKNYG  693
             + TMY+ KPM GHNLMQAIARVNRVF+DK GGL+VDYVGIA +LK+A+++YT  D+ +  
Sbjct  653   MHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-T  711

Query  694   DTDVAKVAYPKFLEKLSVCRDKFHGYDYTKFINGTDLERAKTISGAVNFIMDREKVDDKD  753
               D  K     +L K  V +D +   DY+KF ++   ER  TIS +++++++    D+++
Sbjct  712   AIDTDKAVELMLL-KYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGE-DERQ  769

Query  754   SFVKEALMLHQALSLCSS-LVDKDSRFEAAFFEAVRVLVLRLTNTGVDKKI--SLPEMNA  810
              F+K    L +A++LC++    ++   E AFF AV+  +++L +   + K   + +E++A
Sbjct  770   RFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEA  829

Query  811   RINELLKQSIKSDGVINLFSDI---KEEFSLFDPKFLQEVANMKEKNLAVELLKKLIAEQ  867
              IN+L+ QS+ +++VI+++  +   + ++S++   FL++V  +K+KN+AVELL++L+  Q
Sbjct  830   EINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQ  889

Query  868   VSVYRRTNIVKSEKFSEIMQRSLNAYLNGMLTNEEVIEEMLRLAKQIAAAHQEGDKLGLT  927
             V    +TN   S +FSE++  S+N Y +  +    VIEE+++LAK+I   +Q G+ LGL 
Sbjct  890   VKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLN  949

Query  928   ADELAFYDALTKPQAIKDFYENEELIAITKELADTLRKNKTIDWQKRESARAKMRMlikk  987
             +DE+AFYDAL+  ++ K+   + EL AI+ EL+ T++ N  +DW KR+SA+AKMR+ +++
Sbjct  950   SDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRR  1009

Query  988   llkkhkYPPEGMDDAVQTVMKQCEL  1012
             LLKK  YPP+    AV+ V+ Q EL
Sbjct  1010  LLKKYGYPPDLQKMAVEQVVEQAEL  1034

187) FP2_17130 in NC_021042


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  646 bits (2441),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/1047 (41%), Positives = 692/1047 (67%), Gaps = 51/1047 (4%)

Query  4     FTEDTFEQAVIELFENMGYTHIYAPDMNRTDYS---RPLPDDVLRDCLVRLNRSLPAVA-  59
             F ED +EQ  +E ++++GY    + +++ T  +   ++  D VL++   RL+++L  +  
Sbjct  5     FNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHE---RLEKALRKINS  61

Query  60    ------IDEVILKLNDFDAGSLLQKNIIFMDYLQNGITV-KYAVKGEERSSVVKLIDYAD  112
                   I+  +  L    + +LL++N+ F + L NGI +  Y   G+    +VK+ID+  
Sbjct  62    DIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEY  121

Query  113   ADKNDFYVVNQYTFVENGNNRRPDITLFINGMPLVLMELKSPSKDEVGAENAYNQIRNYM  172
             +++NDF  VNQ T+V+ + ++RPDI LFING+P+V++ELK+++++ VG E++Y+Q+  Y 
Sbjct  122   PQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  173   QDIPSMFYYNAICVISDLSTNKAGTITSGLDRFMEWKTKDGDYENT-AYAQFDTFYEGMF  231
               IP +F +N + V SD    KAG++T+  DRFM W++KDG+ E++ + A +D + +GM+
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGML  241

Query  232   QKARLLDILKNFILFSGDGQKPI-KILAGYHQYFAVRkaieka--kiatktDGKGGVFWH  288
             +   LLD+++ F+LF +DG+  I KILA+YHQY+AV KA+++A    + + DGKGGV+WH
Sbjct  242   NPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWH  301

Query  289   TQGSGKSLSMVFYAHLLQEALDSPTIVVMTDRIDLDDQLYTQFARCAP-----FLRQTPV  343
             TQGSGKSL+MVF++  L + L++PT+VV+TDR DLD+QLY+ F +        +LRQTP 
Sbjct  302   TQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  344   QATSKENLSKLLDGRKANGIIFTTMFKFERGEK-----PLSERRNIVVMADEAHRGQYGF  398
             QA ++ +L  LL    + GI+FTTM KFE  ++     +L+ER+N++VMADEAHR QYGF
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420

Query  399   DEKIVIKENERGEKEAHTVIGNARIIHDALPNATYIGFTGTPISAKDRNTREVFGDYIDV  458
             + K        ++K      G A+ ++DALPNAT++GFTGTP+++ D+NT+ VFG+YIDV
Sbjct  421   NAKY-------DDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDV  473

Query  459   YDMTQAVEDGATRPVYYESRVIKLHLDQNTLALIDATYDALEQQSDAATIEKSKKMLGQM  518
             YDMTQAV DG+T  +YYESRVI L+L Q +L L D +Y+ + ++ +    ++ K   +++
Sbjct  474   YDMTQAVADGSTVKIYYESRVIPLNLPQ-SLDL-DEAYNDITEDQEEDVKQRLKSKWSRI  531

Query  519   ESVLGADSTIQSLCEDIVDHYEKYRANLLTGKAMIVAYSRPIAMKIYRKLLELRPTWNEK  578
             E++ GA + +++L  DI++H+E  R + + GK+MIV+ SR IA+ +Y  ++ L+P W+  
Sbjct  532   EALAGAKPRVEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSD  590

Query  579   ------IGVVMTGGNNDPEDWKEIIGTKSHKEELARKFKDNDDPMKIAIVVDMWLTGFDV  632
                   I VVMTG+++DP   +  IG K +++ L ++ KD DD +++ IV DMWLTGFDV
Sbjct  591   DDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDV  650

Query  633   PSLATMYVYKPMHGYNLMQAIARVNRVFKDKEGGLIVDYVGIASALKAAMKEYTKRDQSR  692
             PS+ TMY+ KPM G NLMQAIARVNRVFKDK GGLIVDYVGIA +LK A+KEYT  DQ++
Sbjct  651   PSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ  710

Query  693   YGDMDIAKVAYPKFQEKLQVCKDLLHGFDFSGFIGGSPLMMAKLVTGGVNFVLDAKAPKR  752
                +D  K     +  K +V +D+L  +D+S F ++        ++  +++V++     R
Sbjct  711   -TAIDTDKAVELMLL-KYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDER  768

Query  753   KDLFLREALLLKQSHSLCSSMTTEQE-RHEAAYMEAVRSTVVKITYGGSGGKT-LSLKEI  810
             +  F++    L ++ +LC++  T QE  +E A+  AV++ +VK+      GKT  +  E+
Sbjct  769   QR-FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  811   NAQINELLKASIQSQGVISLFDSKQADE-NISLFDPAVLDEISKMKEKNIAVEILKKLMA  869
             +A+IN+L+  S+ +++VI ++++   ++ ++S++    L ++  +K+KN+AVE+L++L+ 
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  870   EQVSLYKRTNVVQSQKFSEKITQLMNSYYNGLITNEEVIKELLKTAQEITEQYNNGKKLG  929
              QV    +TN   S++FSE + + +N Y +  I    VI EL++ A++I ++ + G+ LG
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  930   LTQEELAFYDALTKPENIKDFYQNNELIDLTRELTEMLRKNRTIDWQKKETARASMRKMV  989
             L  +E+AFYDAL+  E  K+   ++EL  +++ELT  ++ N  +DW K+++A+A MR  V
Sbjct  948   LNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAV  1007

Query  990   KHLLKKYKYPPEDYDTAISTVISQCEM  1016
             ++LLKKY YPP+    A+  V+ Q E+
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

188) Desru_3588 in NC_015589


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  645 bits (2439),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 417/1011 (42%), Positives = 677/1011 (67%), Gaps = 52/1011 (5%)

Query  2     PYTEANYENAVLEVFRDTLGYGYSYGPDVV--------RDYSDPLYTDELLPALRRVNSK  53
              + E + E+  LE   ++LGY+Y  G ++         +   D +  + L  ALR++NS 
Sbjct  4     QFNEDDLEQVALE-WLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSD  62

Query  54    LPEVALSEAVYKLRNFEGGTVLQKNVQFMDYLQNGVSV-NYYDKGEQRSALVQLVDFDNI  112
             +    +  A+  L    +  +L++N+ F + L NG+ + +Y D G+    +V+++DF+  
Sbjct  63    IHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYP  122

Query  113   KQNTFTVANQWTITENS-EKRPDVIVFLNGLPVVVFELKSPSREETDASEAYRQLRNYMK  171
             ++N F   NQ TI +    KRPD+++F+NGLP+VV+ELK+++ E  +  ++Y+QL  Y  
Sbjct  123   QNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  172   EIPSLFIYNAFLVMSDLATSKAGTITADEDRFMEWKTKDGSYENTQ-YAQFDTFIEGMFE  230
              IP LF +N  LV SD   +KAG++TA+ DRFM W++KDG  E++   A +D +I+GM++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLN  242

Query  231   KGRLLDIIKNFICFSGDAK-----ILGAYHQYFAVRKAITST--AKATETDGRGGVFWHT  283
                LLD+I+ F+ F +D+K     IL+AYHQY+AV KA+  +  A + + DG+GGV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  284   QGSGKSLSMVFYAHLLQEILNSPTIVVLTDRNDLDDQLFGQFAKCAD-----FLRQTPQQ  338
             QGSGKSL+MVF++  L ++LN+PT+VV+TDRNDLD+QL++ F K  +     +LRQTP+Q
Sbjct  303   QGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  339   AESRIHLKELLAGRQANGIIFTTMQKFEESSE-----ALSDRRNIIVMADEAHRGQYGLE  393
             AE+R +LK LL+  ++ GI+FTTMQKFE   +     AL++R+N+IVMADEAHR QYG++
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFN  421

Query  394   EKVDAKTGRVILGTARIIRDSLPNATYIGFTGTPISSKDRSTIEVFGNYIDIYDMTQAVE  453
              K D K   +  G A+ +RD+LPNAT++GFTGTP++S D++T  VFGNYID+YDMTQAV 
Sbjct  422   AKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  454   DGATRPVYYESRVIHLKLDEDVLQLIDAEYDIMGENAEPYAIEKSKKELGQMESILGADQ  513
             DG+T  +YYESRVI L+L +  L+L D  Y+ + E+ E    ++ K   +++E++ GA  
Sbjct  482   DGSTVKIYYESRVIPLNLPQS-LDL-DEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  514   TITALCEDIVKHYEENRQYELTGKAMIVAYSRPIAMKIYHKILQMRPDWTEK------LG  567
              + AL  DI++H+E  RQ  + GK+MIV+ SR IA+ +Y+ I++++P+W         + 
Sbjct  540   RVEALAKDIIQHFE-TRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  568   VVMTSGNNDPEEWREIIGNKRHKDEMAKKFKDNNSPLKIAIVVDMWLTGFDVPSLATMYV  627
             VVMT++++DP   +  IG K++++ + K+ KD +  L++ IV DMWLTGFDVPS+ TMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  628   YKPMAGHNLMQAIARVNRVYKNKEGGLVVDYVGIASALKQAMNDYTNRDKQNYGEQDIAK  687
              KPM GHNLMQAIARVNRV+K+K GGL+VDYVGIA +LK+A+++YT+ D+ + + +  + 
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAID--TD  716

Query  688   TALPKFIEKLEVCRDLFHGFDYAGFMDAKATDLARAKAISGGVNFLSGIDKEKQRESFVK  747
              A+   + K +V +D++  +DY+ F   K ++  R  +IS  ++++ G++ E +R+ F+K
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSDKKSE--RYYTISNTMDYVIGLG-EDERQRFIK  773

Query  748   EAMLLRQALSLCRSLLKPEQ-RFEAAYFEAVRTLLTRI---TGEGKP-LSLKEINARVNE  802
                 L +A++LC +   +++   E A+F AV++ L ++     EGK   +  E++A +N+
Sbjct  774   TVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  803   LLKASIQSEGVINLFSDI---DTGFSLFDPKFLEEIAKMKERNLAVEILKKLLAEQVSLY  859
             L+  S+ +E+VI+++  +   + ++S++   FL ++  +K++N+AVE+L++LL  QV   
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  860   RRTNLVKSEKFSEMLSRAMKAYLNGMLSNEEVIAELMKMAKDMANAQAEGDALGLNDEEL  919
              +TN   S +FSEML+ +++ Y +  +    VI EL+++AKD+ + Q  G+ LGLN +E+
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEI  953

Query  920   AFYDALTRPEAVKDFYQNEELVAMTHELTDMLRKNRTIDWQKKESARAGMR  970
             AFYDAL+  E+ K+   + EL A++HELT  ++ N  +DW K++SA+A MR
Sbjct  954   AFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMR  1004

189) HIB_14360 in NC_016809


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  643 bits (2429),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 443/1087 (41%), Positives = 731/1087 (68%), Gaps = 87/1087 (8%)

Query  3     NENDIKQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQLPE  62
             NE+D+ Q++L++LQSLG +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    SAVDSVVKSATKSDIGDLVVRNQAFYKLLRDGVRVEYQAPNSHGQNEQKIEMARLVDFEH  122
               ++  +   T     +L+  N +F   L +G+ +E    + +++ +  +E+ +++DFE 
Sbjct  66    RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIE----DYDDEGQSIVEIVKIIDFEY  121

Query  123   WGNNRFVAVNQLEIRSRKGGKRIPDITGFVNGLPLVVFELKNPLRESADLLQAFNQFETY  182
               NN F+AVNQL I +    KR PDI  F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETY
Sbjct  122   PQNNDFLAVNQLTIVNGDYKKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  183   KDEIAELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQSlln  242
             K  I++LF +N+ L+ SDGI ++ GSL+A+++RF  W+  D +  S+       L+ L++
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGL--ASLDVLIH  238

Query  243   gllkpkdlldYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVESTIFATSEQGDKRIGV  302
             G+L+P  LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AV+ +++A+SEQGD + GV
Sbjct  239   GMLNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGV  298

Query  303   MWHTQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLI  357
             +WHTQGSGKS++M+F++GKL+    L+NPT+VVVTDRNDLD QL+ TF      SGK+L+
Sbjct  299   IWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLL  356

Query  358   KQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERNNIIVISDEAHR  417
             +QTP+Q E R +L+ LL+  E GG+ FTT+QKF  +++E+  + L ER+N+IV++DEAHR
Sbjct  357   RQTPKQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHR  415

Query  418   SQYGFTQKLHN--GKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYD  475
             +QYGF  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD
Sbjct  416   TQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYD  475

Query  476   LQDAVEDGATVPIVYEAR--QIKLAENANHDELFAEIDELLEGEKNPKLRLREK------  527
             + +AV DG+TV I YE+R   ++L+++ + DE + +I E  + E + K RL+ K      
Sbjct  476   MTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIEA  533

Query  528   LLGSEARLHDLAVDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNQIIALHPEWHSDNIN  587
             L G+ +R++ LA D++QHF  R++ + +K+M+V  SR+I VDLY++II L PEWHSD+ +
Sbjct  534   LAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDD  593

Query  588   EGAIKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCC  647
              G IK+VMTGS+SD++  Q+H+ +K+ ++ LE+R KD +D L++VIVRDMWLTGFD P  
Sbjct  594   KGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSM  653

Query  648   NTMYIDKPMQGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELEKATRQYTNSQGKG  707
             +TMYIDKPM+GHNLMQAIARVNRVF++K+   GGLIVDYVGIA+ L  A ++YT+S+   
Sbjct  654   HTMYIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD---  707

Query  708   KLADSVIDVFFKMKEHLEVIRSLFATPVEGKTFDVQAALEKDNPNDLLMAIRFAANHIL-  766
                                              + Q+A++ D++ +L++ +++   + + 
Sbjct  708   ---------------------------------QAQTAIDTDKAVELML-LKYDVIQDML  733

Query  767   -SLDQLSFDGKAHEQHWFNKKET--------EPRKKAFLKTAGLVKKGYMLCGALAEVEP  817
              +LD   F++    ++ +   +T        E  ++ F+KT   + K++ LC++ +  + 
Sbjct  734   YNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQE  793

Query  818   YNQEIAFYDAVRAILTK--------REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLL  869
              N+EIAF+ AV+A L K        + +K  +  E +I  ++LV+Q+V +E+VID+++ L
Sbjct  794   LNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI--NQLVSQSVVTEDVIDVYQTL  851

Query  870   EKPQPQISLLSEEFLQTVKNSPTKNLWVSAMERYLASEIKVKSGTNLTLQKDFEKRLKEA  929
                QP++S+LS++FL+ V     KN+ V  ++R L +++K    TN T+ K F   L ++
Sbjct  852   GLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNS  911

Query  930   LNQYHNHNLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGD  989
             +N+Y+++++    +++EL+++++D+++    G+ LGL  +E+AFY+AL+ +++AK+ MGD
Sbjct  912   INKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMGD  971

Query  990   EVLSKLAKEITETLRKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIKQ  1049
               L  +A E+T T++ ++ +DW  +++ +A++R+ VRR L+KY YPPD Q  AV  V+ Q
Sbjct  972   KELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQ  1031

Query  1050  AEEIAED  1056
             AE +A++
Sbjct  1032  AELMANN  1038

190) Alfi_1812 in NC_018011


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  640 bits (2418),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 434/1045 (42%), Positives = 696/1045 (67%), Gaps = 56/1045 (5%)

Query  2     HFTEDDFENAILELFREQLGYDYVYGPNVMRDYAEP--------LYVEVLEAVLPQINRG  53
             +F EDD+E+  LE + + LGYDY  G ++      P        +  E LE  L +IN +
Sbjct  4     QFNEDDLEQVALEWL-QSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSD  62

Query  54    LPQAAIDEAMVKIRTYEGGTLVQKNELFTDYLQNGVAVNYFDGREQCSAN-VRLVDYDSP  112
             +    I+ A+  +    +  L+++N  F + L NG+ ++ +D+  Q   + V+++D++ P
Sbjct  63    IHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYP  122

Query  113   LHNRFTIANQWT-VDGHSVRRADMIVFVNGLPLVVVELKSPSRENTDVSEAYAQLRNYMQ  171
              +N F   NQ T V+G+  +R+D+++F+NGLP+VV+ELK+++ E  +V ++Y QL  Y  
Sbjct  123   QNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  172   EIPSLFIYNAFCVMSDQAMTKAGTITAGEDRFMQWKTVDGSYEDTHS-ANFDVLFAGMFE  230
              IP LF +N   V SD   TKAG++TA  DRFM W++ DG  E + + A++DVL+ GM++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLN  242

Query  231   KTRFVELLRNFVCYSKDGKQDI-KILSAYHQFYAVHKAVLSTV--KAAETDGRGGVFWHT  287
                +++L+R FV +  DGK +I KIL+AYHQ+YAV+KAV  ++   + + DG+GGV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  288   QGSGKSLSMVFFAKQLQQAMSSPTIVVLTDRNDLDGQLYRQFA-----CCRDFLRQTPVQ  342
             QGSGKSL+MVFF+ +L Q +++PT+VV+TDRNDLD QLY  F        +++LRQTP Q
Sbjct  303   QGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  343   AESRAHLRELLAGREANGIFFSTMQKFEESEE-----PLSTRRNIVVMADEAHRSQYGLE  397
             AE+R +L+ LL+  E+ GI F+TMQKFE  ++     +L+ R+N++VMADEAHR+QYG++
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFN  421

Query  398   ERVRMVTDADGVTQAKVVIGAARLVRNALPNATYIGFTGTPISQKDRSTREVFGDYIDVY  457
              +      ++G+       G A+ +R+ALPNAT++GFTGTP++  D++T+ VFG+YIDVY
Sbjct  422   AKYD--DKGEGIK-----YGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVY  474

Query  458   DMTQSVEDGATRPVFYESRVINLKLDEQSLRRIdaeydamaeeaeeyVIEKSKRELGRLD  517
             DMTQ+V DG+T  ++YESRVI L+L  QSL  +D  Y+ ++E+ EE V ++ K   +R++
Sbjct  475   DMTQAVADGSTVKIYYESRVIPLNL-PQSLD-LDEAYNDITEDQEEDVKQRLKSKWSRIE  532

Query  518   SILGADATVASLCEDIVKHYEEFRQYEQTGKAMIVAYSRPIAIKIYRRILEMRPVWSDK-  576
             ++ GA + V +L  DI++H+E  RQ    GK+MIV+ SR IA+ +Y  I+ ++P W    
Sbjct  533   ALAGAKPRVEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDD  591

Query  577   -----LAVVMTSGNKDPEDWRAIIGNDSHKKELEKRFKDNDSSLKIVIVVDMWLTGFDVP  631
                  + VVMT+++ DP   +  IG   +++ LEKR KD D  L++VIV DMWLTGFDVP
Sbjct  592   DDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVP  651

Query  632   SLSTMYVYKPMSGHNLMQAIARVNRVFGDKQGGLVVDYVGIASALKTAMNDYTYRDRKNY  691
             S+ TMY+ KPM GHNLMQAIARVNRVF DK GGL+VDYVGIA +LK A+++YT  D+   
Sbjct  652   SMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQ---  708

Query  692   GDTDVAKTAYPEFQK-KLDVCRDLMYGFDYGAFFGKSDLERAKAISGGVDFMQSPERMET  750
             ++T +      E+   K DV +D++Y +DY+ F +    ER  +IS  +D++ +    E 
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDER  768

Query  751   KKLYIKEALLLRQALSLCQSLLNYEQ-RIEAAYFEAVRTLLTRV-----EAKGKISFREI  804
             ++ +IK    L +A++LC +    ++   E A+F AV++ L ++     E+K + +  E+
Sbjct  769   QR-FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  805   NGRINELLKQSIKSEGVINLFSDI---KEEFSLFDSKFLEEVARMKERNFAVELLRRLIA  861
             ++ IN+L+ QS+ +E+VI+++  +   + ++S++   FL +V  +K++N AVELL RL+ 
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  862   EQVQLYQRTNTVRAEKFSEILADAMSRYLKGMLTNEEVIEELLKIAREIVHGEKAGKSLN  921
              QV+   +TN+  + +FSE+L++++++Y    +    VIEEL+++A++I + ++ G+ L 
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  922   LNSEELAFYDALTKPEAVKDFYSNDQLVAITRELTDALRRNKTIDWNMKESARAGMRRIV  981
             LNS+E+AFYDAL+  E+ K+  ++ +L AI++ELT +++ N  +DW+ ++SA+A MR  V
Sbjct  948   LNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAV  1007

Query  982   KRLLKKYNYPPAGQEDALNTIMEQC  1006
             +RLLKKY YPP  Q  A++ ++EQ 
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQA  1032

191) hsdR_1 in NC_014370


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  638 bits (2413),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/1040 (41%), Positives = 689/1040 (67%), Gaps = 51/1040 (4%)

Query  2     PFTEDNYEKALISLFEGMGYQYLYGPNIERDYYVP--------YYEAQLEESLQTVNPKK  53
              F ED+ E+  +  ++++GY+Y  G +I      P          + +LE +L+ +N+  
Sbjct  4     QFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  54    PHAAIHEAIIKLRNIDMGSLAQRNETFTDYLQHGIEV-SYFNGKEMRNEMVYLIDFEHTE  112
                 I+ A+  L      +L + N TF + L +GIE+  Y +  +   E+V +IDFE  +
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  113   KNTFQVINQWTFIENA-EKRADIIVFVNGLPLVVVELKSPSREETDASEAYLQLRNYMKD  171
             +N F  +NQ T+++    KR+DI++F+NGLP+VV+ELK+++ E  +  ++Y QL  Y   
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  172   IPSLFAFNMFCVMSDMALSKAGTITSKEDRYMEWKTKDGNYEST-EFIDYDTFFEGIFQR  230
             IP LF+FN   V SD   +KAG++T++ DR+M W++KDG+ ES+  +   D +++G+++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  231   ERLLDIIKNFICFAKEEKGS-AKILAGYHQYFAVKKAIERT--KHATVSNGKIGVFWHTQ  287
             E LLD+I+ F+ F  + KG  +KILA+YHQY+AV+KA++R+    +  ++GK GV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  288   GSGKSLSMVFYAHLLQQELSQPTIVVITDRNDLDDQLYTQFSKCKE-----FLRQTPVQA  342
             GSGKSL+MVF++  L Q L++PT+VV+TDRNDLD+QLY+ F K K      +LRQTP QA
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  343   NSRENLKELLSGREANGIIFTTMQKFEESDE-----PLSERRNIIVMTDEAHRGQYGFEE  397
             ++R +LK LLS  E+ GI+FTTMQKFE  ++     +L+ER+N+IVM+DEAHR QYGF+ 
Sbjct  364   ETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNA  422

Query  398   KVDATTGKVSIGTARIIHNSLPNASYIGFTGTPISTKDRDTVEVFGDYIDIYDMTQAVND  457
             K D     +  G A+ ++++LPNA+++GFTGTP+++ D++T  VFG+YID+YDMTQAV D
Sbjct  423   KYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  458   GATCPVYYESRVINLNLDDATlqalddeyellaeeGATTEQIEKSKKEMSHLEEILGAPA  517
             G+T  +YYESRVI LNL ++       +     +E    +++   K   S++E + GA +
Sbjct  483   GSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRL---KSKWSRIEALAGAKP  539

Query  518   TIDSLCQDILKHYEENRQYELTGKAMIVAYSRPIAMSIYHRLLELRPTWTDK------VK  571
              +++L +DI++H+E  RQ  + GK+MIV+ SR IA+ +Y+ ++ L+P W         +K
Sbjct  540   RVEALAKDIIQHFE-TRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  572   VVMTGSNQDPEEWHDIIGNKQYKKELARRFKDDNDPMKIAIVVDMWLTGFDVPSLATMYV  631
             VVMTGS+ DP   +  IG K+ ++ L +R KD +D +++ IV DMWLTGFDVPS+ TMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  632   YKPMSGHNLMQAIARVNRVFNGKVGGLVVDYIGIAKALKEAMRDYTGRDRKNFGNPDIKG  691
              KPM GHNLMQAIARVNRVF++K GGL+VDY+GIA +LKEA+++YT  D+ + +    K+
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKA  718

Query  692   MAFTKFKEKLEVCQDLFHGYNYSRFHTGTDADRAKLIKGGVNFMLATDKQEQLPLYMKEA  751
             + +  +  K +V QD++   +YS+F+++  ++R   I   ++++++ + +E+   ++K  
Sbjct  719   VELMLL--KYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQR-FIKTV  775

Query  752   ALLHNSITLCRSLLNKEQRFLA---AFFETVRTLLSRM-----TGKGKVTKKEINARISE  803
             + L ++++LC +    ++  L    AFF +V++ L ++      GK + T  E++A I++
Sbjct  776   TELGKAFALCATEPTAQE--LNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  804   LLKQSVKSEGVINLFSDV---KAEFSLFDTAFLDEISKMKEKNIavellkkllaekvalY  860
             L+ QSV +E+VI+++  +   ++++S++   FL ++  +K+KN+AVELL++LL  +V   
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  861   QKTNIVQSEKFSDLLNRSLSNYLKGLLTNEEVIQELLQLAKEIASADSAANELGLTPEEK  920
              KTN   S +FS++L  S+++Y    +    VI+EL+QLAK+I   +  +NELGL ++E 
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEI  953

Query  921   SFYDALTKPQAIHDFYSNEELVAMTKELTDSLRKNRTIDWQKKESARAGMRRMIKHLLKK  980
             +FYDAL+  ++  +  ++ EL A++ ELT +++ N  +DW K++SA+A MR  +++LLKK
Sbjct  954   AFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKK  1013

Query  981   YHYPPEEAANALETVIKQCE  1000
             Y YPP+    A+E V+ Q E
Sbjct  1014  YGYPPDLQKMAVEQVVEQAE  1033

192) AL1_19090 in NC_021030


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  635 bits (2398),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 434/1045 (42%), Positives = 698/1045 (67%), Gaps = 56/1045 (5%)

Query  2     HFTEDDFENAILELFREQLGYDYVYGPNVIRDYAEP--------LYVEALEAVLPQINRG  53
             +F EDD+E+  LE + + LGYDY  G ++      P        +  E LE  L +IN +
Sbjct  4     QFNEDDLEQVALEWL-QSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSD  62

Query  54    LPQAAIDEAMVKIRTYEGGTLVQKNELFTDYLQNGVAVNYFDGREQCSAN-VRLVDYDSP  112
             +    I+ A+  +    +  L+++N  F + L NG+ ++ +D+  Q   + V+++D++ P
Sbjct  63    IHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYP  122

Query  113   LHNRFTIANQWT-VDGHSVRRADMIVFVNGLPLVVVELKSPSRENTDVSEAYAQLRNYMQ  171
              +N F   NQ T V+G+  +R+D+++F+NGLP+VV+ELK+++ E  +V ++Y QL  Y  
Sbjct  123   QNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  172   EIPSLFIYNAFCVMSDQGMTKAGTITAGEDRFMQWKTVDGSYEDTHS-ANFDVLFAGMFE  230
              IP LF +N   V SD   TKAG++TA  DRFM W++ DG  E + + A++DVL+ GM++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLN  242

Query  231   KTRFVELLRNFICYSKDGKQRV-KILSAYHQFYAVRKAVLSTV--KAAETDGRGGVFWHT  287
                +++L+R F+ +  DGK ++ KIL+AYHQ+YAV KAV  ++   + + DG+GGV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  288   QGSGKSLSMVFFAKQLQQAMSSPTIVVLTDRNDLDGQLYRQFA-----CCRDFLRQTPVQ  342
             QGSGKSL+MVFF+ +L Q +++PT+VV+TDRNDLD QLY  F        +++LRQTP Q
Sbjct  303   QGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  343   AESRAHLRELLAGREANGIFFSTMQKFEESEE-----PLSIRRNIVVMADEAHRSQYGLE  397
             AE+R +L+ LL+  E+ GI F+TMQKFE  ++     +L+ R+N++VMADEAHR+QYG++
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFN  421

Query  398   ERVRMVTDADGVMQAKVVIGAARLVRNALPNATYIGFTGTPIAQKDRSTREVFGDYIDVY  457
              +      ++G+       G A+ +R+ALPNAT++GFTGTP+A  D++T+ VFG+YIDVY
Sbjct  422   AKYD--DKGEGIK-----YGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVY  474

Query  458   DMTQSVDDGATRPVFYESRVINLKLDEQTLRRIdaeydamaeeaeeyVIEKSKRELGRLD  517
             DMTQ+V DG+T  ++YESRVI L+L  Q+L  +D  Y+ ++E+ EE V ++ K   +R++
Sbjct  475   DMTQAVADGSTVKIYYESRVIPLNL-PQSLD-LDEAYNDITEDQEEDVKQRLKSKWSRIE  532

Query  518   SIFGADATVASLCEDIVKHYEEFRQYEQTGKAMIVAYSRPIAIKIYRRILEMRPVW----  573
             ++ GA + V +L  DI++H+E  RQ    GK+MIV+ SR IA+ +Y  I+ ++P W    
Sbjct  533   ALAGAKPRVEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDD  591

Query  574   GDK--LAVVMTSGNKDPEDWRAIIGNDSHKKELEKRFKDNDSSLKIVIVVDMWLTGFDVP  631
             +DK  + VVMT+++ DP   +  IG   +++ LEKR KD D  L++VIV DMWLTGFDVP
Sbjct  592   DDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVP  651

Query  632   SLSTMYVYKPMSGHNLMQAIARVNRVFGDKQGGLVVDYVGIASALKTAMNDYTYRDRKNY  691
             S+ TMY+ KPM GHNLMQAIARVNRVF DK GGL+VDYVGIA +LK A+++YT  D+   
Sbjct  652   SMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQ---  708

Query  692   GDTDVAKTAYPEFQK-KLDVCRDLMYGFNYGAFFGKSDLERAKAISGGVDFMQSPERMET  750
             ++T +      E+   K DV +D++Y ++Y+ F +    ER  +IS  +D++ +    E 
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDER  768

Query  751   KKLYIKEALLLRQALSLCQSLLNYEQ-RIEAAYFEAVRTLLTRV-----EGKGKISFREI  804
             ++ +IK    L +A++LC +    ++   E A+F AV++ L ++     EGK + +  E+
Sbjct  769   QR-FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  805   NGRINELLKQSIKSEGVINLFSDI---KEEFSLFDPKFLEEVARMKERNFAVELLRRLIA  861
             ++ IN+L+ QS+ +E+VI+++  +   + ++S++   FL +V  +K++N AVELL RL+ 
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  862   EQVQLYQRTNTVRAEKFSEILSDAMSRYLKGMLTNEEVIEELLKIAREIVFGEKAGESLN  921
              QV+   +TN+  + +FSE+L++++++Y    +    VIEEL+++A++I   ++ G+ L 
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  922   LNSEELAFYDALTKPEAVKDFYSNDQLIAITRELTDALRRNKTIDWNMKESARAGMRRIV  981
             LNS+E+AFYDAL+  E+ K+  ++ +L AI++ELT +++ N  +DW+ ++SA+A MR  V
Sbjct  948   LNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAV  1007

Query  982   KRLLKKYDYPPAGQEDALNTIMEQC  1006
             +RLLKKY+YPP  Q  A++ ++EQ 
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQA  1032

193) Dtpsy_1863 in NC_011992


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  634 bits (2397),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 387/845 (46%), Positives = 590/845 (70%), Gaps = 64/845 (7%)

Query  2    TEDQLEKETLGWLADVGYSLHNGLDIAQDGINPQRADYRQVVLSFRLREAIQRLNPHIPT  61
             ED+LE+ +L WL  +GY   +G +I+  ++ P+R   ++VVL  RL  A++++N++I  
Sbjct  6    NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62   AAREDALHRVLDLG-IPSLLSANRAFHKLLVGGVPVQ-YQKEGETRGDFVRLVDWSEASR  119
               E ALH  L L   P+LL  N +FH  L+ G+ ++ Y+ EG++  ++V+++D   +  
Sbjct  66   RFIEKALHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  120  NEFWAVNQFTIKGPHHTRRPDIILFVNGLPLVLLELKNPADQAADIWKAYDQIQTYKEHI  179
            N+F AVNQ+TI   +  +RPDI+LF+NGLP+V++ELKN+++++ ++  +Y+Q++TYK +I
Sbjct  125  NDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180  PDVFQYNEVLVISDGTEARLGSLSANAERFMQWRTIDGVNLDPLGEFNELETLVRGALAP  239
            P++F +NEVLV SDG +++ GSL+AN +RFM WR+ DG + ++   +  L+ L++G L P
Sbjct  185  PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG-QTESSPGLASLDVLIHGMLNP  243

Query  240  QYLLDYLRYFVLFEDDGS--LVKKIAGYHQFHAVRSAIAHVVAASRPDSAANQRGKGGVV  297
            + LLD +RYFVLF+DDG   + K +A+YHQ+ AV  A+ + + AS  ++     GKGGV+
Sbjct  244  ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGD----GKGGVI  299

Query  298  WHTQGSGKSITMTCFAARVMQEPAMANPTIVVITDRNDLDGQLFGVF-----SLAQDLLR  352
            WHTQGSGKS+TM  F+++++Q   + NPT+VV+TDRNDLD QL++ F       +++LLR
Sbjct  300  WHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLR  357

Query  353  EQPAQASTRQQLRQLLSNRPSGGIVFATIQKFMPGEDEDMFPVLSERHNIVVIADEAHRT  412
            + P QA TR++L+ LLS   SGGIVF+T+QKF P ++E   + L+ER N++V+ADEAHRT
Sbjct  358  QTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRT  416

Query  413  QYGFEAKLKTIKNKGASAAKALVLADGETSGAAVTADFAEPEYLTKYQVGYAQHLRDALP  472
            QYGF+AK                    +  G ++           KY  GYA+ LRDALP
Sbjct  417  QYGFNAKY-------------------DDKGEGI-----------KY--GYAKYLRDALP  444

Query  473  HATFVAFTGTPVSSTDRDTRAVFGDYISVYDMQQAKEDGATVAIYYESRLAKLRLKEEDL  532
            +ATFV+FTGTPV+STD++T+ VFG+YI VYDM QA  DG+TV IYYESR+  L L  + L
Sbjct  445  NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNL-PQSL  503

Query  533  SFLddevdelaedeeeSTQAQLKSRWAALEKVVGATPRVASVAADLVAHFEERNKTQDGK  592
              LD+  ++++ED+EE  + +LKS+W+ +E + GA PRV ++A D++ HFE R+++  GK
Sbjct  504  D-LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGK  562

Query  593  AMVVAMSRDICVHLYNEIVKLRPDWHDSDPEKGAIKIVMTGSASDKALLRPHIYSAQVKK  652
            +M+V+MSR I V+LY+EI++L+P+WH  D +KG IK+VMTGS+SD + ++ HI + + ++
Sbjct  563  GMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRN  622

Query  653  RLEKRFKDPTDPLRLVIVRDMWLTGFDAPCVHTMYVDKPMKGHNLMQAIARVNRVFKDKQ  712
             LEKR KD  D L+LVIVRDMWLTGFD P +HTMY+DKPMKGHNLMQAIARVNRVFKDK 
Sbjct  623  LLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKP  682

Query  713  GGLVVDYIGIGNELKAAMKEYTASQGRGKPTVDAHEALSVLLEKMDVLRAMLHGYDYSGF  772
            GGL+VDY+GI++ LK A+KEYT S+ +++ ++D++ A+ ++L K DV++ ML   DYS F
Sbjct  683  GGLIVDYVGIAESLKEALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKF  741

Query  773  LTGGHK----TLAGAANHVLGIKSEGKDSKRDGKKRFADSALAMSKAFSLCCTLDEAKAL  828
             ++       T++ + + V+G+  + ++       RF  +   ++KAF+LC T   A+ L
Sbjct  742  NSDKKSERYYTISNTMDYVIGLGEDERQ-------RFIKTVTELGKAFALCATEPTAQEL  794

Query  829  REEVP  833
             +E++
Sbjct  795  NDEIA  799

194) Shel_17680 in NC_013165


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  626 bits (2364),  Expect = 2e-180, Method: Compositional matrix adjust.
 Identities = 422/1050 (41%), Positives = 709/1050 (68%), Gaps = 49/1050 (4%)

Query  18    NEDFFEQVIIEHLRDEHGYEFLHGPDVPRT--TPD---YRDVFLPAVLPDSLRRINPGLP  72
             NED +EQV +E L+   GY++  G +++ T  TP+    +DV L   L  +LR+IN+++ 
Sbjct  6     NEDDLEQVALEWLQS-LGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIH  64

Query  73    TAAIEQAVLKISNIEAGGLYQKNEVFNDYLQSGVEVHFYDGKEER-DDIVYLLDFDDPEN  131
                IE+A+  ++   +  L ++N  F++ L +G+E++ YD+  +   +IV ++DF+ P+N
Sbjct  65    PRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQN  124

Query  132   NSFHVVNQWTFV--EYSQKRPDVVVFVNGMPLVVFELKSPSREETDASDAYLQLRQYMKQ  189
             N F  VNQ T+V  +Y +KRPD+V+F+NG+P+VV+ELK+++ E  +  D+Y QL  Y  +
Sbjct  125   NDFLAVNQLTIVNGDY-KKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  190   IPSMFVPNVFCVMSDMSETRVGTITADEDRYVSWKSVDGDYSGTKG-ATWRTMLDGMMPK  248
             IP +F  N   V SD  +T+ G++TA+ DR+++W+S DG+  ++ G A+   +++GM+  
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  249   ARLLDIVRNFVCFNDDS-SRVVKILAGYHQYFGVTKAADRAV--EAVAGDGKIGVFWHTQ  305
               LLD++R FV F+DD+ +++ KILA+YHQY++V KA DRA+   +  GDGK GV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  306   GSGKSLSMVFFAHLLQERLESPTIVVITDRNDLDDQLYGQFCRCAP-----FLRQTAVQA  360
             GSGKSL+MVFF+  L + L++PT+VV+TDRNDLD+QLY+ F +        +LRQT+ QA
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  361   TSRDGANDSTSLKRLLVGREANGIVFTTMQKFMDGEE-----PLCDRSNVVVMVDEAHRG  415
              +R        LK LL + E+ GIVFTTMQKF   ++     +L +R NV+VM DEAHR 
Sbjct  364   ETR------KELKSLL-SVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRT  416

Query  416   QYGLTERMDAEGNvrvgaarv-vrkaLPNASYIGFTGTPISTEDKNTREIFGDYIDVYDM  474
             QYG+  + D  G+    +    +R ALPNA+++GFTGTP+++ DKNT+ +FG+YIDVYDM
Sbjct  417   QYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDM  476

Query  475   TQAVEDNATRPVYYESRVVALKLDEAKLAQLDaayaefaseanaVSVEKAKRDTGGLDAI  534
             TQAV D +T  +YYESRV++L+L ++   +LD AY +++ + +    ++ K   + ++A+
Sbjct  477   TQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEAL  534

Query  535   FGAPETIDALCRDIIDHYENNRADILAGKALIVAYSRPVAMKIYYRMMELRPEW------  588
              GA   ++AL +DII+H+E  R + + GK++IV+ SR +A+ +Y  ++ L+PEW      
Sbjct  535   AGAKPRVEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDD  593

Query  589   KDKLGVVMTMGNQDPEEWFDVCGGKTHKKEMERRFKDDCDPLKIAIVVDMWLTGFDVPSL  648
             K+ + VVMT ++ DP       G K +++ +E+R KD  D L++ IV DMWLTGFDVPS+
Sbjct  594   KGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSM  653

Query  649   ATMYVFKPMRGHNLMQAIARVNRVCKGKEGGLVVDYIGIARALKQAMKDYTNRDQSNYGD  708
              TMY+ KPM+GHNLMQAIARVNRV K+K GGL+VDY+GIA +LK+A+K+YT+ DQ++   
Sbjct  654   HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-TA  712

Query  709   MDVAATAYPKFLEKLDVCRDLMYGFDYRKAIFTDSKAQLASAIAEGTDWLLEPSREEDRE  768
             +D   +    +L K DV +D++Y +DY K + +D K++   +I++  D ++  + E++R+
Sbjct  713   IDTDKAVELMLL-KYDVIQDMLYNLDYSK-FNSDKKSERYYTISNTMDYVIGLG-EDERQ  769

Query  769   DFIKQCQLMNQALSLCKSLVSEED-QHEAAYLSVLRVQVLRLTgrqgsggggMTYAEFNK  827
              FIK    + +A++LC +  + ++ ++E A++  ++  +++L      G    T AE + 
Sbjct  770   RFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEA  829

Query  828   RVTAILEQTVQADGVIDLFEK---DSVEISLFDEAFLQELANMKQKNIAVESLKRLIKER  884
              +  ++ Q+V +++VID+++    +  ++S++ + FL+++  +KQKN+AVE L+RL+K +
Sbjct  830   EINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQ  889

Query  885   VRAYQRTSVVKAEKFSDMLQGTLNAYLNGMLTNAQVIEELVNMAKEMMKDRTDAEKLGLS  944
             V++  +T+   + +FS+ML  ++N Y +  +  ++VIEEL+++AK++ +++  ++ LGL+
Sbjct  890   VKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLN  949

Query  945   DEEMAFYDAITKPRAVKDFYDNDQLVAITRELTEAMRTNATIDWQRKESARAGMRRAIKR  1004
              +E+AFYDA++   + K+  ++ +L AI++ELT +++ N  +DW +++SA+A MR A++R
Sbjct  950   SDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRR  1009

Query  1005  LLRKYKYPPEGADEAMTTVMAQCELWADTK  1034
             LL+KY YPP+    A+  V+ Q EL A+ +
Sbjct  1010  LLKKYGYPPDLQKMAVEQVVEQAELMANNQ  1039

195) FP2_13030 in NC_021042


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  621 bits (2348),  Expect = 5e-179, Method: Compositional matrix adjust.
 Identities = 433/1054 (42%), Positives = 698/1054 (67%), Gaps = 61/1054 (5%)

Query  5     FTESNYENAVLQLLNEELGYNYIYGPDVERDYHSP--------LYEDVLLPSLQRINKSL  56
             F E + E+  L+ L + LGY+Y  G ++     +P        + ++ L  +L++IN  +
Sbjct  5     FNEDDLEQVALEWL-QSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  57    PMDALTEAIYKLKNFETGTLLQKNMVFMDYLQNGVPVKYYDK-GEERSTLVYLVDFKNPA  115
                 +  A+  L    +  LL++N+ F + L NG+ +  YD  G+    +V ++DF  P 
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  116   SNEFTVANQWTFIENS-EKRPDVILFVNGLPLVIVELKSPSREETDASAAYRQLRNYMYE  174
             +N+F   NQ T+++    KRPD++LF+NGLP+V++ELK+++ E  +   +Y+QL  Y   
Sbjct  124   NNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  175   IPSMFIYNAVCVMSDLTTSKAGTITSGEDRFMEWKTTDGSYENTQH-ASFDTFFVGLFEK  233
             IP +F +N V V SD   +KAG++T+  DRFM W++ DG  E++   AS+D ++ G+++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNP  243

Query  234   TRFLDIVKNFICFNVDGQNTF-KILAGYHQYFAVKKAIEST--KHATVTDGKGGVFWHTQ  290
               +LD+++ F+ F+ DG+  + KILA+YHQY+AV+KA++ +    +   DGKGGV+WHTQ
Sbjct  244   ETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQ  303

Query  291   GSGKSLSMVFYAHYLQEALESPTIVVITDRNDLDDQLYGQFARCKD-----FLRQTPQHA  345
             GSGKSL+MVF++  L + L++PT+VV+TDRNDLD+QLY+ F + K+     +LRQTP++A
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  346   ESRKNLKELLANRQANGIIFTTMQKFEESNE-----ALSERRNIIVMADEAHRGQYGLNE  400
             E+RK+LK LL+  ++ GI+FTTMQKFE  ++     AL+ER+N+IVMADEAHR QYG+N 
Sbjct  364   ETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNA  422

Query  401   KVVVKQKDNGEVEAKTVIGTARIIRDTLPNATYIGFTGTPISTKDRSTREVFGDYIDIYD  460
             K    +K++G        G A+ +RD+LPNAT++GFTGTP+++ D++T+ VFG+YID+YD
Sbjct  423   KY--DDKGEG-----IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYD  475

Query  461   MTQAVEDGATRPVYYESRVIHLKLDENTLHLIDNEYDIMADNADPYVIEKSKKELGQMEA  520
             MTQAV DG+T  +YYESRVI L+L + +L+L D+ Y+ ++++ +  V ++ K   +++EA
Sbjct  476   MTQAVADGSTVKIYYESRVIPLNLPQ-SLDL-DEAYNDITEDQEEDVKQRLKSKWSRIEA  533

Query  521   ILGADQTINSLVNDILDHYENYRENILTGKAMIVAYSRPIAMKIYKRILELRPAWTEK--  578
             + GA   +++L +DI++H+E  R++ + GK+MIV+ SR IA+ +Y  I+ L+P W     
Sbjct  534   LAGAKPRVEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD  592

Query  579   ----IAVVMTQGNNDPEEWREIIGNKAHKDDMARKFKDNNSPLKIAIVVDMWLTGFDVPS  634
                 I VVMT +++DP   +  IG K +++ + ++ KD +  L++ IV DMWLTGFDVPS
Sbjct  593   DKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPS  652

Query  635   LATMYVYKPMAGHNLMQAIARVNRVFKDKEGGLVVDYVGIAAALKQAMNDYTARDKKNYG  694
             + TMY+ KPM GHNLMQAIARVNRVFKDK GGL+VDYVGIA +LK+A+++YT  D+ +  
Sbjct  653   MHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-T  711

Query  695   DTDVSKAAYPKFLEKLSICRDLFHGFSYEKFMTGSDLDRAKLISGGVNFILGKSVAEYEL  754
               D  KA    +L K  + +D++  + Y KF ++   +R   IS  +++++G       L
Sbjct  712   AIDTDKAVELMLL-KYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIG-------L  763

Query  755   PDHEKTQNVFIKEALLLKQALSLCSS-LVDEQTRMEAAFFESVRTMTVRLV---SGGTGK  810
              ++E+ +  FIK    L +A++LC++    ++   E AFF +V++  V+L+     G  +
Sbjct  764   GEDERQR--FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTR  821

Query  811   KFTLPEVNERINELLKHSIKSEGVINLFSDV---QTEFSLFDPKFLEEVANMKEKNLAVE  867
             K T +EV+  IN+L+ +S+ +E+VI+++  +   Q ++S++   FL +V  +K+KN+AVE
Sbjct  822   K-TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVE  880

Query  868   LLKKLISEQVSVYRRTNIVKSEKFSEIIQSAMNRYLNGMLTNEEVIQellklakdiaaaa  927
             LL++L+  QV    +TN   S +FSE++ +++N+Y +  +    VI+EL++LAKDI    
Sbjct  881   LLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQ  940

Query  928   aegeklgltaDELAFYDALTKPQAIKDFYEHDELIAITKELTDLLRKNQTIDWQKKESAR  987
               G+ LGL +DE+AFYDAL+  ++ K+   + EL AI+ ELT  ++ N  +DW K++SA+
Sbjct  941   QRGNELGLNSDEIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAK  1000

Query  988   AGMrrlvkrllkkHKYPPEGMDDAVQTVMSQCEM  1021
             A MR  V+RLLKK  YPP+    AV+ V+ Q E+
Sbjct  1001  AKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

196) hsdR in NC_016052


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  607 bits (2294),  Expect = 9e-175, Method: Compositional matrix adjust.
 Identities = 433/1043 (42%), Positives = 693/1043 (67%), Gaps = 58/1043 (5%)

Query  3     FAEDNYENAIIELFCDKLDYDYVPGWDV-------DRDYNEPLYLDE-LMTSLERINPTL  54
             F ED+ E+  +E + + L+YDY  G ++       +R  +  + L+E L  +L +IN+ +
Sbjct  5     FNEDDLEQVALEWL-QSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDI  63

Query  55    SRAAIDEAVNKLRRFDNGTLVQINKVFTSYLQNGIEV-SYYDRGEQKASLVKLVDFENIS  113
                 I+ A++ L    +  L++ N  F   L NGIE+  Y D G+    +VK++DFE   
Sbjct  64    HPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQ  123

Query  114   KNSFTVINQWTI--DEYSRKRPDVLVFLNGIPVVVFELKSPSREETNASDAYLQLKTYQK  171
             +N F  +NQ TI  ++Y +KRPD+++F+NG+P+VV+ELK+++ E     D+Y QL TY+ 
Sbjct  124   NNDFLAVNQLTIVNGDY-KKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  172   EIPSLFNYNAFCVMSDLAISKAGTITAGEDRFMEWKTIDGSYENTQ-YAQWDTLIEGMFE  230
              IP LF +N   V SD   +KAG++TA  DRFM W++ DG  E++   A  D LI+GM++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLN  242

Query  231   KKRFLDILENFICFSDDAK-----ILAAYHQYFAVHKAVVSAI--KATETDGRGGVFWHT  283
                +LD++  F+ F DD+K     ILAAYHQY+AV+KAV  A+   + + DG+GGV+WHT
Sbjct  243   PETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHT  302

Query  284   QGSGKSLSMVFFTHMIQKILNLPTVVILTDRNDLDEQLYAQFAKCTN-----FLRQEPVQ  338
             QGSGKSL+MVFF+  + ++LN PT+V++TDRNDLD+QLY+ F K        +LRQ P Q
Sbjct  303   QGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  339   ASNREELKNLLDGRQANGIIFSTMQKFVESEE-----PLSERRNIIVMADEAHRGQYGLD  393
             A  R ELK+LL   ++ GI+F+TMQKF   ++     +L+ER+N+IVMADEAHR QYG++
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFN  421

Query  394   EKVDTKTGQIKFGAARRVRDSLPNASYIGFTGTPISKKDKSTTEVFGNYIDVYDMTQAVE  453
              K D K   IK+G A+ +RD+LPNA+++GFTGTP++  DK+T  VFGNYIDVYDMTQAV 
Sbjct  422   AKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  454   DGATRPVYYESRVIHLKLDNDVLKHIDDEYDLMAESADSQAIEKSKQELGRLDSILGAEQ  513
             DG+T  +YYESRVI L+L + +  ++D+ Y+ ++E  + +  ++ K   +R++++ GA  
Sbjct  482   DGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  514   TINALVDDIVQHYEENREQELTGKAMVVAYSRSIAIKIYHKMLEKRPSWAK------TIG  567
              ++AL  DI+QH+E  R+Q + GK+M+V+ SR IA+ +Y+ ++  +P W         I 
Sbjct  540   RVEALAKDIIQHFE-TRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  568   VVMTSSNNDPEEWHNIIGNkkhkeemakkfkDSDDEFKIAIVVDMWLTGFDVPSLATMYV  627
             VVMT+S++DP   +  IG KK+++ + K+ KD DDE+++ IV DMWLTGFDVPS+ TMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  628   YKPMSGHNLMQAIARVNRVYKEKEGGLIVDYVGIAGALKQAMNDYTQRDKSN--FGDPNV  685
              KPM GHNLMQAIARVNRV+K+K GGLIVDYVGIA +LK+A+++YT+ D+++  ++  + 
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKA  718

Query  686   AETALPKFKEKLEVCRDIFHGLDYSAFLDEDATNLTRAKIISGGVNFLSSIDKEEQKEEY  745
              E  L K+    +V +D++  LDYS F  +  ++  R   IS  ++++ +++ E++++ +
Sbjct  719   VELMLLKY----DVIQDMLYNLDYSKFNSDKKSE--RYYTISNTMDYVIGLG-EDERQRF  771

Query  746   lkqalllrqalql-crsllGarerfeaayfeaVRTVLTRI---SGEGD-KLSLKEINGRI  800
             +K    L +A+ L      +     E A+F AV++ L ++   + EG  + +  E+++ I
Sbjct  772   IKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI  831

Query  801   NSLLKASIKSEGVVNLFSD---AETEFSLFDPQFLDEIANMKEKNLAVELLKKLIAEQIS  857
             N L+  S+ +E+V++++      + ++S++  +FL ++  +K+KN+AVELL++L+  Q+ 
Sbjct  832   NQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVK  891

Query  858   LYKQTNLVKSKKFSEMLSNSMKAYLNGMLTNEEVIQELKDMAKDMKNATEEGTDLGLTDE  917
                +TN   SK+FSEML+NS++ Y +  +    VI+EL ++AKD+K+  + G +LGL  +
Sbjct  892   SLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSD  951

Query  918   ELAFYDAITKPEAVEDFIENDQLVSLTHELTDMLRKSRTVDWQKKESARAHMrrkvkkll  977
             E+AFYDA++  E+  + + + +L +++HELT  ++ +  VDW K++SA+A MR  V++LL
Sbjct  952   EIAFYDALASHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLL  1011

Query  978   rkykyPPEGMEEAISTVTQQCEL  1000
             +KY YPP+    A+  V +Q EL
Sbjct  1012  KKYGYPPDLQKMAVEQVVEQAEL  1034

197) M493_07025 in NC_022080


> AB462393|39|G32|229002233|BAH57699.1|Staphylococcus_aureus_PM1|-|28778..31897|hsdR|-|type 
I restriction-modification system 
endonuclease homologue
Length=1039

 Score =  439 bits (1655),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 307/732 (42%), Positives = 480/732 (66%), Gaps = 47/732 (6%)

Query  7    GETEFEETTIERLKRLGYDYLHAQELFQRG---ERNSLHEVVLYGRLEAFLKKAYPAIPE  63
             E ++E+ ++E+L+ LGYDY  ++E+   +   ER+S  +VVL  RLE  L+K  + I  
Sbjct  6    NEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  64   HEIKRLAQVLTAPDEVKLINRNMHFHKMLTKGLEF-SYEVNDETYTPHVFPIDWEHPENN  122
            + I +  + LT     +L++ N+ FH  L +G+E+  Y+ ++++    V  ID E P+NN
Sbjct  66   RFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNN  125

Query  123  DFLVVNQLSI-EGRMSRRPDIVIYINGLPLIVFELKNPNNEQATVYDAYTQIQNYTYDIS  181
            DFL VNQL+I +G   +RPDIV++INGLP++V+ELKN+ NE   V D+Y Q++ Y   I+
Sbjct  126  DFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  182  QLFNYNAFVVISDNVETKHGMPFADYDFFASWKSIDGRNVDNNRANTMRTLIEGLFPKDR  241
            QLF +N  +V SD ++TK G   A+YD F +W+S DG+   +    ++  LI+G++  + 
Sbjct  186  QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGMLNPET  245

Query  242  LLNYIRNFIVFLEEG-SKITKVGAKYHQFFGVNFAVNEAIRATRPDGDRKIGVMYHTTGS  300
            LL+ IR F++F ++G + I+K+ A YHQ+++VN AV+ A+ A+  +GD K GV+ HT GS
Sbjct  246  LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGS  305

Query  301  GKSLSMLFFVGILSRHPEMENPSIVIQVDRNDLDEQLHDTFVQGKSYIGHV------HHA  354
            GKSL+M+FF G L +   ++NP++V+  DRNDLD+QL  TFV++K+  G         +A
Sbjct  306  GKSLTMVFFSGKLIQM--LNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  355  ENTEQLRTLLRGEAGQIIFSTIEKFRKKEGETRHPVLSERRNIVVIADEAHRTQ---agf  411
            E   +L++LL  E+G I+F+T++KF   + ET  + L+ER+N++V+ADEAHRTQ    + 
Sbjct  364  ETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGFNAK  423

Query  412  aggfaaQLRY--------ALPNASYIGFTGTPVDFVDNNTEEIFGHIIHRYDMAQAVEDK  463
             ++ +  ++Y        ALPNA+++GFTGTPV   D+NT+ +FG+ I+ YDM+QAV D 
Sbjct  424  YDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADG  483

Query  464  ATLPIYYESRLIPLDLSAG-DIDEKYRKiieeaggddeesesYKRKWAALEKVVGTPKRL  522
            +T+ IYYESR+IPL+L+ + D+DE Y       + +++  +  K KW+ +E + G+  R+
Sbjct  484  STVKIYYESRVIPLNLPQSLDLDEAYND--ITEDQEEDVKQRLKSKWSRIEALAGAKPRV  541

Query  523  RRLAKDIVSHFNQVANPFQ-KAMIVCMSRRIAVDLYNYL--------REIPECPPVEVIM  573
              LAKDI+ HF+   ++ + K+MIV MSRRIAVDLY+ +         +  +   + V+M
Sbjct  542  EALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVM  601

Query  574  TGDVSKDPKEWREVQPGSKYAHIKSKKEQEEVKAKLRDPEDPLKFVIVVDMWLTGMDAKP  633
            TG  S DP   +         HI +KK ++ +  +++D +D L++VIV DMWLTG D  +
Sbjct  602  TGS-SSDPTSFQ--------RHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPS  652

Query  634  LSYLYIDKPMKGHNLMQAIARVNRVFPGKEGGVVVDYIGIATSLKEATHKYTQSGGTGSP  693
            +  +YIDKPMKGHNLMQAIARVNRVF +K GG++VDY+GIA SLKEA   YT+S+ + ++
Sbjct  653  MHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTA  712

Query  694  TYDISEAVNIFM  705
              D   AV++ +
Sbjct  713  I-DTDKAVELML  723