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PAthogenisity Island DataBase (PAI DB)

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Homologs of uvrD gene of GQ497943

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ROD_50011
( YP_003368364.1 )

DNA helicase

NC_013716
(Citrobacter rodentium ICC168)

0.0

2) EC042_4548
( YP_006098825.1 )

hypothetical protein

NC_017626
(Escherichia coli 042)

0.0

3) EC55989_3316
( YP_002404283.1 )

UvrD/REP helicase

NC_011748
(Escherichia coli 55989)

0.0

4) EC042_3187
( YP_006097478.1 )

putative helicase

NC_017626
(Escherichia coli 042)

0.0

5) O3M_04340
( YP_006768547.1 )

UvrD/REP helicase

NC_018650
(Escherichia coli 2009EL-2050)

0.0

6) O3O_21350
( YP_006782654.1 )

UvrD/REP helicase

NC_018661
(Escherichia coli 2009EL-2071)

0.0

7) O3K_04300
( YP_006777590.1 )

UvrD/REP helicase

NC_018658
(Escherichia coli 2011C-3493)

0.0

8) YpsIP31758_0807
( YP_001399791.1 )

hypothetical protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

5e-125

9) Q7A_2175
( YP_006296634.1 )

nuclease-like protein

NC_017857
(Methylophaga sp. JAM1)

2e-117

10) Tgr7_1772
( YP_002513841.1 )

DNA helicase II

NC_011901
(Thioalkalivibrio sulfidophilus HL-EbGR7)

1e-113

11) CJA_0632
( YP_001981153.1 )

putative DNA helicase II

NC_010995
(Cellvibrio japonicus Ueda107)

4e-109

12) rep [C]
( YP_007218405.1 )

DNA helicase II; NERD domain-containing protein

NC_019902
(Thioalkalivibrio nitratireducens DSM 14787)

3e-108

13) SEEB0189_19710
( YP_008310223.1 )

type I restriction endonuclease

NC_021844
(Salmonella enterica CFSAN000189)

4e-108

14) SeD_A4939
( YP_002218401.1 )

DNA helicase II

NC_011205
(Salmonella enterica CT_02021853)

1e-107

15) Nhal_1170
( YP_003526720.1 )

NERD domain-containing protein

NC_013960
(Nitrosococcus halophilus Nc 4)

6e-108

16) ROD_48331
( YP_003368221.1 )

hypothetical protein

NC_013716
(Citrobacter rodentium ICC168)

6e-108

17) SG4357
( YP_002229051.1 )

type I restriction enzyme

NC_011274
(Salmonella enterica 287/91)

7e-108

18) SEN4292
( YP_002246307.1 )

type I restriction enzyme

NC_011294
(Salmonella enterica P125109)

7e-108

19) SPUCDC_4504
( YP_008484010.1 )

putative Type I restriction enzyme

NC_022221
(Salmonella enterica CDC1983-67)

4e-107

20) SPUL_4517
( YP_005215548.1 )

putative Type I restriction enzyme

NC_016831
(Salmonella enterica RKS5078)

4e-107

21) R2APBS1_1138
( YP_007589528.1 )

nuclease-like protein

NC_020541
(Rhodanobacter sp. 2APBS1)

6e-105

22) Daci_3682
( YP_001564699.1 )

NERD domain-containing protein

NC_010002
(Delftia acidovorans SPH-1)

3e-101

23) Rfer_4005
( YP_525234.1 )

hypothetical protein

NC_007908
(Rhodoferax ferrireducens T118)

5e-101

24) Aave_4619
( YP_972930.1 )

hypothetical protein

NC_008752
(Acidovorax citrulli AAC00-1)

2e-99

• Sequence Alignments

1) ROD_50011 in NC_013716


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  973 bits (3687),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 590/604 (98%), Positives = 601/604 (99%), Gaps = 0/604 (0%)

Query  1    MILLEHEYVMAKLINVSASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDF  60
            MILLEHEYVMAKLIN+SASTEERMTPGERRVASRLESFLNDDC+VWYDIPVGRKNRHPDF
Sbjct  5    MILLEHEYVMAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDF  64

Query  61   VIIDPDNGLVFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALP  120
            VIIDPDNGLVFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALP
Sbjct  65   VIIDPDNGLVFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALP  124

Query  121  ADPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKALTGNDENAVEKIFPSAQTICQDEM  180
            ADPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLK+L+GNDE+AVEKIFPSAQTICQDEM
Sbjct  125  ADPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEM  184

Query  181  TQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILA  240
            TQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQ+SQIKIMDIQQEILA
Sbjct  185  TQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQIKIMDIQQEILA  244

Query  241  RNIGDGHRVIHGVAGSGKTMILLCRCLYLAETTSGKILVLCYNITLASYLRECIEARGLR  300
            RNIGDGHRVIHGVAGSGKTMILL RCLYLAETTSGKILVLCYNITLASYLRECIEARGL 
Sbjct  245  RNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGKILVLCYNITLASYLRECIEARGLA  304

Query  301  SRVTVSHFHSWCASMAKRHGIQVTADRKEYPEKCFSTLEEAVNSGKITQTGYDAVLVDEG  360
            SRVTVSHFHSWCASM KRHGIQVT+DRK+YPEKCFS+LEEAVNSGKIT+TGYDAVLVDEG
Sbjct  305  SRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGYDAVLVDEG  364

Query  361  HDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVN  420
            HDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVG+QAQGRTSVLPVN
Sbjct  365  HDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQGRTSVLPVN  424

Query  421  YRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADW  480
            YRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADW
Sbjct  425  YRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADW  484

Query  481  LEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFDSEGKKAYSRRKDVVHLL  540
            LEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFDSEGKKAYSRRKDVVHLL
Sbjct  485  LEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFDSEGKKAYSRRKDVVHLL  544

Query  541  TYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHL  600
            TYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHL
Sbjct  545  TYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHL  604

Query  601  EDFA  604
            EDFA
Sbjct  605  EDFA  608

2) EC042_4548 in NC_017626


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  945 bits (3580),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 567/595 (96%), Positives = 587/595 (99%), Gaps = 0/595 (0%)

Query  1    MAKLINVSASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  60
            MAKLIN+SASTEERMTPGERRVASRLESFLNDDC+VWYDIPVGRKNRHPDFVIIDP+NGL
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  120
            VFLEVKDWTVSTLR+ NQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPA+PCLRQND
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  180
            GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDE+AVEKIFPSAQTICQDEMTQSVLPEVF
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  181  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILARNIGDGHRV  240
            RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQ+SQIKIMDIQQEILARNIGDGHRV
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQIKIMDIQQEILARNIGDGHRV  253

Query  241  IHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIEARGLASRVTVSHFH  300
            IHGVAGSGKTMILLFRCLYLAETT+GKILVLCYNITLASYLRECIEARGLASRVTVSHFH
Sbjct  254  IHGVAGSGKTMILLFRCLYLAETTSGKILVLCYNITLASYLRECIEARGLASRVTVSHFH  313

Query  301  SWCASMVKRHGIKVTADRKEYPDKCFSTLEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA  360
            SWCASMVKRHGI+VT+DRK+YP+KCFS+LEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA
Sbjct  314  SWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA  373

Query  361  LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVNYRNPKRILH  420
            LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVG+QAQGRTSVLPVNYRNPKRILH
Sbjct  374  LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQGRTSVLPVNYRNPKRILH  433

Query  421  FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRHVLCG  480
            FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRH LCG
Sbjct  434  FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRHALCG  493

Query  481  HWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRKDVVHLLTYQSSKGLE  540
            HWSDMAVLCP+E S +QL++VMT RG+PFATCFD EGKK+YSRRKDVVHLLTYQSSKGLE
Sbjct  494  HWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFDSEGKKAYSRRKDVVHLLTYQSSKGLE  553

Query  541  FPYVAVINASFVHSGAADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA  595
            FPYVAVINASFV SG ADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA
Sbjct  554  FPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA  608

3) EC55989_3316 in NC_011748


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  945 bits (3581),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 568/595 (96%), Positives = 587/595 (99%), Gaps = 0/595 (0%)

Query  1    MAKLINVSASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGL  60
            MAKLIN+SASTEERMTPGERRVASRLESFLNDDC+VWYDIPVGRKNRHPDFVIIDP+NGL
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   VFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQND  120
            VFLEVKDWTVSTLR+ NQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPA+PCLRQND
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  180
            GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDE+AVEKIFPSAQTICQDEMTQSVLPEVF
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  181  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILARNIGDGHRV  240
            RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQ+SQIKIMDIQQEILARNIGDGHRV
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQIKIMDIQQEILARNIGDGHRV  253

Query  241  IHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIEARGLASRVTVSHFH  300
            IHGVAGSGKTMILLFRCLYLAETT+GKILVLCYNITLASYLRECIEARGLASRVTVSHFH
Sbjct  254  IHGVAGSGKTMILLFRCLYLAETTSGKILVLCYNITLASYLRECIEARGLASRVTVSHFH  313

Query  301  SWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA  360
            SWCASMVKRHGI+VT+DRK+YP+KCFSALEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA
Sbjct  314  SWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA  373

Query  361  LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVNYRNPKRILH  420
            LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVG+QAQGRTSVLPVNYRNPKRILH
Sbjct  374  LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQGRTSVLPVNYRNPKRILH  433

Query  421  FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRHVLCG  480
            FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRH LCG
Sbjct  434  FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRHALCG  493

Query  481  HWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRKDVVHLLTYQSSKGLE  540
            HWSDMAVLCP+E S +QL++VMT RG+PFATCFD EGKK+YSRRKDVVHLLTYQSSKGLE
Sbjct  494  HWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFDSEGKKAYSRRKDVVHLLTYQSSKGLE  553

Query  541  FPYVAVINASFVHSGAADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA  595
            FPYVAVINASFV SG ADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA
Sbjct  554  FPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA  608

4) EC042_3187 in NC_017626


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  943 bits (3574),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 567/595 (96%), Positives = 587/595 (99%), Gaps = 0/595 (0%)

Query  1    MAKLINVSASTEERMTSGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  60
            MAKLIN+SASTEERMT+GERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQARRYACDTVNALLADPCLRQND  120
            VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQ RRYACDTVNAL ADPCLRQND
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GQYKGRLNLAWAYGVVFTRITRQQLKALTGNDENAVEKIFPSAQTICQDEMTQSVLPEVF  180
            GQYKGRLNLAWAYGVVFTRITRQQLK+L+GNDE+AVEKIFPSAQTICQDEMTQSVLPEVF
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  181  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILARNIGDGHRV  240
            RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQ+SQIKIMDIQQEILARNIGDGHRV
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQIKIMDIQQEILARNIGDGHRV  253

Query  241  IHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIDVRGLTSRVTVSHFH  300
            IHGVAGSGKTMILLFRCLYLAETT+GKILVLCYNITLASYLRECI+ RGL+SRVTVSHFH
Sbjct  254  IHGVAGSGKTMILLFRCLYLAETTSGKILVLCYNITLASYLRECIEARGLASRVTVSHFH  313

Query  301  SWCASMIKRHGIQVTADRKDYPEKCFSTLEEAVNSGKITDAGYDAVLVDEGHDFDSRWLA  360
            SWCASM+KRHGIQVT+DRKDYPEKCFS+LEEAVNSGKIT +GYDAVLVDEGHDFDSRWLA
Sbjct  314  SWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA  373

Query  361  LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQAQGRTSVLPVNYRNPKRILH  420
            LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVG+QAQGRTSVLPVNYRNPKRILH
Sbjct  374  LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQGRTSVLPVNYRNPKRILH  433

Query  421  FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILHCASERDEARQVADWLEKCHALCG  480
            FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEIL+CASERDEARQVADWLEK HALCG
Sbjct  434  FAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRHALCG  493

Query  481  HWSDMAVLCPTEHSAKQLQDVMTQRGMPFATCFDREGKKAYSRRKDVVHLLTYQSSKGLE  540
            HWSDMAVLCP+E S KQL++VMTQRG+PFATCFD EGKKAYSRRKDVVHLLTYQSSKGLE
Sbjct  494  HWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFDSEGKKAYSRRKDVVHLLTYQSSKGLE  553

Query  541  FPYVAVINASFIPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA  595
            FPYVAVINASF+PSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA
Sbjct  554  FPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA  608

5) O3M_04340 in NC_018650


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  880 bits (3333),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/554 (96%), Positives = 546/554 (99%), Gaps = 0/554 (0%)

Query  1    MGRKNRHPDFVIIDPENGLVFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRR  60
            +GRKNRHPDFVIIDP+NGLVFLEVKDWTVSTLR+ NQEQVTLETDGLLKSEINPLVQVRR
Sbjct  55   VGRKNRHPDFVIIDPDNGLVFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRR  114

Query  61   YACDTVNALPANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFP  120
            YACDTVNALPA+PCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDE+AVEKIFP
Sbjct  115  YACDTVNALPADPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFP  174

Query  121  SAQTICQDEMTQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIK  180
            SAQTICQDEMTQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQ+SQIK
Sbjct  175  SAQTICQDEMTQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQIK  234

Query  181  IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYL  240
            IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETT+GKILVLCYNITLASYL
Sbjct  235  IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGKILVLCYNITLASYL  294

Query  241  RECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRT  300
            RECIEARGLASRVTVSHFHSWCASMVKRHGI+VT+DRK+YP+KCFSALEEAVNSGKITRT
Sbjct  295  RECIEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRT  354

Query  301  GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQA  360
            GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVG+QA
Sbjct  355  GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQA  414

Query  361  QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE  420
            QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE
Sbjct  415  QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE  474

Query  421  RDEARQVADWLEKRHVLCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTY  480
            RDEARQVADWLEKRH LCGHWSDMAVLCP+E S +QL++VMT RG+PFATCFD EGKK+Y
Sbjct  475  RDEARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFDSEGKKAY  534

Query  481  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVHSGAADESEVIPVLYVAFTRATRELLVTC  540
            SRRKDVVHLLTYQSSKGLEFPYVAVINASFV SG ADESEVIPVLYVAFTRATRELLVTC
Sbjct  535  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTC  594

Query  541  YRENSISRHLEDFA  554
            YRENSISRHLEDFA
Sbjct  595  YRENSISRHLEDFA  608

6) O3O_21350 in NC_018661


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  880 bits (3333),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/554 (96%), Positives = 546/554 (99%), Gaps = 0/554 (0%)

Query  1    MGRKNRHPDFVIIDPENGLVFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRR  60
            +GRKNRHPDFVIIDP+NGLVFLEVKDWTVSTLR+ NQEQVTLETDGLLKSEINPLVQVRR
Sbjct  55   VGRKNRHPDFVIIDPDNGLVFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRR  114

Query  61   YACDTVNALPANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFP  120
            YACDTVNALPA+PCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDE+AVEKIFP
Sbjct  115  YACDTVNALPADPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFP  174

Query  121  SAQTICQDEMTQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIK  180
            SAQTICQDEMTQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQ+SQIK
Sbjct  175  SAQTICQDEMTQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQIK  234

Query  181  IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYL  240
            IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETT+GKILVLCYNITLASYL
Sbjct  235  IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGKILVLCYNITLASYL  294

Query  241  RECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRT  300
            RECIEARGLASRVTVSHFHSWCASMVKRHGI+VT+DRK+YP+KCFSALEEAVNSGKITRT
Sbjct  295  RECIEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRT  354

Query  301  GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQA  360
            GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVG+QA
Sbjct  355  GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQA  414

Query  361  QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE  420
            QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE
Sbjct  415  QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE  474

Query  421  RDEARQVADWLEKRHVLCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTY  480
            RDEARQVADWLEKRH LCGHWSDMAVLCP+E S +QL++VMT RG+PFATCFD EGKK+Y
Sbjct  475  RDEARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFDSEGKKAY  534

Query  481  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVHSGAADESEVIPVLYVAFTRATRELLVTC  540
            SRRKDVVHLLTYQSSKGLEFPYVAVINASFV SG ADESEVIPVLYVAFTRATRELLVTC
Sbjct  535  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTC  594

Query  541  YRENSISRHLEDFA  554
            YRENSISRHLEDFA
Sbjct  595  YRENSISRHLEDFA  608

7) O3K_04300 in NC_018658


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  880 bits (3333),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/554 (96%), Positives = 546/554 (99%), Gaps = 0/554 (0%)

Query  1    MGRKNRHPDFVIIDPENGLVFLEVKDWTVSTLRQVNQEQVTLETDGLLKSEINPLVQVRR  60
            +GRKNRHPDFVIIDP+NGLVFLEVKDWTVSTLR+ NQEQVTLETDGLLKSEINPLVQVRR
Sbjct  55   VGRKNRHPDFVIIDPDNGLVFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRR  114

Query  61   YACDTVNALPANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDENAVEKIFP  120
            YACDTVNALPA+PCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDE+AVEKIFP
Sbjct  115  YACDTVNALPADPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFP  174

Query  121  SAQTICQDEMTQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIK  180
            SAQTICQDEMTQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQ+SQIK
Sbjct  175  SAQTICQDEMTQSVLPEVFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQIK  234

Query  181  IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYL  240
            IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETT+GKILVLCYNITLASYL
Sbjct  235  IMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGKILVLCYNITLASYL  294

Query  241  RECIEARGLASRVTVSHFHSWCASMVKRHGIKVTADRKEYPDKCFSALEEAVNSGKITRT  300
            RECIEARGLASRVTVSHFHSWCASMVKRHGI+VT+DRK+YP+KCFSALEEAVNSGKITRT
Sbjct  295  RECIEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRT  354

Query  301  GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGIQA  360
            GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVG+QA
Sbjct  355  GYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQA  414

Query  361  QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE  420
            QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE
Sbjct  415  QGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASE  474

Query  421  RDEARQVADWLEKRHVLCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTY  480
            RDEARQVADWLEKRH LCGHWSDMAVLCP+E S +QL++VMT RG+PFATCFD EGKK+Y
Sbjct  475  RDEARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFDSEGKKAY  534

Query  481  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVHSGAADESEVIPVLYVAFTRATRELLVTC  540
            SRRKDVVHLLTYQSSKGLEFPYVAVINASFV SG ADESEVIPVLYVAFTRATRELLVTC
Sbjct  535  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTC  594

Query  541  YRENSISRHLEDFA  554
            YRENSISRHLEDFA
Sbjct  595  YRENSISRHLEDFA  608

8) YpsIP31758_0807 in NC_009708


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  441 bits (1661),  Expect = 5e-125, Method: Compositional matrix adjust.
 Identities = 274/612 (45%), Positives = 410/612 (67%), Gaps = 23/612 (3%)

Query  1    MAELIPTLNSCSEKMTPGERRFAKRIEASLGNDCLCWYDIPVGRQRRYPDFIILNPERGL  60
            MA LI    S  E+MTPGERR A R+E+ L +DC+ WYDIPVGR+ R PDF+I++P+ GL
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   LFVEVKDWRIEHLRKINKTSVQYFHNNELITLTNPIEQVRQCSYAVINQLKTDMQLLQQE  120
            +F+EVKDW +  LRK N+  V    +  L +  NP+ QVR+ +   +N L +D  L Q++
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  ERYKGGLCMAYGYGVVFSHITRKQLNSAIPVDEQI--NILPPNLVICSDEITDSISSELF  178
             +YKG L +A +YGVVF++ITR+QL++    DE    +I+P+   IC DE+T+S+ +E+F
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  179  SHALWALFPYQFKMSLTSVQRDRIRWHLFPEIRITHTQTDLFQTDEINVNKASCQPIPDI  238
             + + ++F   F+  +T+  RD +R HLFPE+ + +                        
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQ---------------------  232

Query  239  IRIMDIQQELLARSLGEGHRVIHGVAGSGKTLILLYRCLYLAEVLTTPILVLCYNMTLAA  298
            I+IMDIQQE+LAR++G+GHRVIHGVAGSGKT+ILL+RCLYLAE  +  ILVLCYN+TLA+
Sbjct  233  IKIMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGKILVLCYNITLAS  292

Query  299  RLKCQIAERGLEERVQVFHFHGWCKDQCQKYNVNVKALEGNPWELHVEAVIDAVNGGIIP  358
             L+  I  RGL  RV V HFH+WC    ++  ++V +   +  E    A+ +AVN+G I 
Sbjct  293  YLRECIEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKIT  352

Query  359  KEQYGAVLIDEGHDFDSTWLALVSQMVDTKTNALLFMYDDAQSIYRKRGALSFSLASVGI  418
            +  Y+AVL+DEGHDFDS WLAL++++ D  + +LL+MYDDAQSIYR+  AL+FSLASVG+
Sbjct  353  RTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGV  412

Query  419  QAQGRTSILRLNYRNTKEILAFSYIFAQQHFDSRDDSHTAFMPPESAGPQGIPPELKSFE  478
            QAQGRTS+L +NYRN K IL F+Y F+++ F+ +++ + +++ P+++G +G  PE+    
Sbjct  413  QAQGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCA  472

Query  479  SLSKEVFHLISWIKNEHSNGVCWRDIAILCPSNGVGKYLEIALVNTDIPHAHLFTANDKK  538
            S   E  ++  W+ + H+    W D+A+LCP++   K L   + + +IP A  F +++KK
Sbjct  473  SERDEARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFDSEGKK  532

Query  539  RYNPSNDKVCILPLPSSKGLEFHSVAVIDSSHILNDGLDLADEVRRLYVGFTRATQHLLV  598
             Y+  +D V +L   SSKGLEF  VAVI++S + ++  D ++ +  LYV+FTRAT++LLV
Sbjct  533  AYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLV  592

Query  599  TWHKNNALSTSL  610
            T  ++N++S  L
Sbjct  593  TCYRENSISRHL  604

9) VF_A0135 in NC_006841


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  426 bits (1602),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 262/609 (44%), Positives = 397/609 (66%), Gaps = 32/609 (5%)

Query  1    MAELIPTLNTCLSKMTAGEKRFAQRVENLLEDDYICWYDIPVGRQRRYPDFIILHPARGL  60
            MA LI    +   +MT+GE+R A R+E++L+DD + WYDIPVGR+ R PDF+I++P  GL
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   LFLEVKDWKLDTIRNIDASRVELLTSKGIETTSNPIEQVRQCSYQVIDKLKRDNLLINQD  120
            +FLEVKDW + T+R+ +  +V L T   + +  NP+ QVR+ + + ++ L  D  L ++D
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GKYKGNLCLPYGYGVVLTNITRIQLDRAIPLDAQ--DSVLPHHLVICKDEMVSTIDPEKF  178
            G+YKG L L+ +YGVV+T ITR QL      D    + ++P    IC+DEM  ++ PE F
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  179  QTKLWNMFNYKFGNQLSLPQIDRIRWHLFPEIRISTSEQQTLLPLEDTNELINPNDHIPE  238
            + K+  MF   F  +++    D +R HLFPE+ +    Q                     
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQ---------------------  232

Query  239  IIKIMDIQQEQLARSLGDGHRVIHGVAGSGKTLILGYRCLHLAEQLKKPILVLCFNITLA  298
             IKIMDIQQE LAR++GDGHRVIHGVAGSGKT+IL +RCL LAE     ILVLC+NITLA
Sbjct  233  -IKIMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGKILVLCYNITLA  291

Query  299  ARLRSFINDKGIAGQVQVYHFHDWCGQQIKTYNLDIQKGEAPYWERQVETVIEGVEKGNI  358
            + LR  I+ +G+A++V V HFH WC+  +K   +++  +   Y E+   ++ E+V+ G+I
Sbjct  292  SYLRECIEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKI  351

Query  359  PKGQYGALLIDEGHDFEAEWLTLITQMIDPETNSLLLLYDDAQSIYKKKSNLDFSLASVG  418
             +  Y+A+L+DEGHDF++ WL+LI++++D  + SLLL+YDDAQSIY++   L+FSLASVG
Sbjct  352  TRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVG  411

Query  419  IQAQGRTTVLRLNYRNTREILSFSYQFAKQYFDNSDTKEIPLIHPESAGITGSHPVVKKF  478
            +QAQGRT+VL +NYRN + IL F+Y F+++YF++ + +EIPL++P+++G  G++P + + 
Sbjct  412  VQAQGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC  471

Query  479  STMDQEVEYAVKCLVHWKQNGYA----WSDIAIIYPCKHIGKKVAEALKTRSIPHILLAT  534
            ++  +E     + + +W ++  A    WSD+A++ P     K++ E +  R+IP      
Sbjct  472  ASERDE----ARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFD  527

Query  535  SEHKKQYNPINDVVNVLPIPSSKGLEFKTVVILNSSNIPKKSDNRSEDIRRLYVGMTRAT  594
            SE KK Y+  +DVV++L   SSKGLEF  V ++N+S +P    + SE I  LYV+ TRAT
Sbjct  528  SEGKKAYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRAT  587

Query  595  HNLLATYHK  603
            ++LL T  +
Sbjct  588  RELLVTCYR  596

10) Q7A_2175 in NC_017857


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 261/596 (44%), Positives = 395/596 (67%), Gaps = 34/596 (5%)

Query  15   RMTSGEKRLATRLRNFLEDDYLCWYDIPIGKRRRYPDFIILHPSRGLLFLEVKDWKASSI  74
            RMT+GE+R+A+RL +FL+DD + WYDIP+G++ R PDF+I++P  GL+FLEVKDW  S++
Sbjct  27   RMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGLVFLEVKDWTVSTL  86

Query  75   KKITKETVELLTINGLKTVPNPFVQVRQYAYQGIRLLEADKELRQKGSKYDGNLVTPYAH  134
            +K  +E V L T   LK+  NP+VQVR+YA + +  L AD  LRQ++++Y G L  + A 
Sbjct  87   RKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQNDGQYKGRLNLAWAY  146

Query  135  GVVFTNITRNQIEAAIPAEYR--EKLLPDHLMIYKDEMTESVDPEEFQKRLWDMFPYQFQ  192
            GVVFT ITR+Q+ +    +    EK++P    I +DEMT+SV PE F++++ +MF   F+
Sbjct  147  GVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVFRQKIAGMFTTGFR  206

Query  193  TKLTLPQIDRIRWHLFPEVRISQPSQENLFGTLINQPDTPEDLSTLSEQIPDIIRIMDIQ  252
            T++T    D +R HLFPEV + Q SQ                           I+IMDIQ
Sbjct  207  TRVTPRMRDILRAHLFPEVTVKQKSQ---------------------------IKIMDIQ  239

Query  253  QEQLARSLGEGHRVIHGVAGSGKTLILGYRAELLAKLTNKPILVLCFNITLAAKLRSFMV  312
            QE LAR++G+GHRVIHGVAGSGKT+IL +R   LA  T+  ILVLC+NITLA+ LR  + 
Sbjct  240  QEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGKILVLCYNITLASYLRECIE  299

Query  313  SKGISDKVNVHHFHDWCSQQLKTYHVDVLAGDEPYWERQVISVINGVSKDDIPRAQYSAV  372
            ++G++ +V V HFH WC+  +K   ++V ++   Y E+   ++ ++V+ + I R+ Y AV
Sbjct  300  ARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGYDAV  359

Query  373  MIDEGHDFESDWLKLVVQMIDPETNSLLLLCDDAQSIYKKKSGLSFSLASTGIQAQGRST  432
            ++DEGHDF+S WL L+ +++D  + SLLL+ DDAQSIY++  +L+FSLAS G+QAQGR++
Sbjct  360  LVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQGRTS  419

Query  433  ILKLNYRNTREILAFAYDFAKEYFGASHDDVDIPLIQPEAAGIHGERPTVHFLKQWQDEI  492
            +L +NYRN + IL FAY F++EYF   H++ +IPL+QP+A+G +G  P +      +DE 
Sbjct  420  VLPVNYRNPKRILHFAYAFSREYF-EKHQNREIPLVQPQAGGEEGTEPEILRCASERDEA  478

Query  493  SDTITCIKKWHQRGGEWRDMAILFAANYQGKAIADSLHQHGIPYSWLGSKETKHAYNPTK  552
             +    + K+H   G+W DMA+L +A++  K + + + Q+GIP++     E K AY+  K
Sbjct  479  RQVADWLEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFDSEGKKAYSRRK  538

Query  553  DSVSVLSIHSSKGLEFPAVVIVGISQLKQDDINAEA---RLLYVGMTRAQKHLHMT  605
            D V +L+ +SSKGLEFP V ++  S +   ++  E+    +LYV+ TRA ++L +T
Sbjct  539  DVVHLLTYQSSKGLEFPYVAVINAS-FVPSGVADESEVIPVLYVAFTRATRELLVT  593

11) Tgr7_1772 in NC_011901


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  403 bits (1516),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 262/619 (43%), Positives = 402/619 (65%), Gaps = 34/619 (5%)

Query  1    MATLIPSLNSCLGRMQAGEKRFARRLESHLEDDYLCWYEMPVGRRQRYSDFIVLHPARGL  60
            MA LI    S   RM +GE+R A RLES L+DD + WY++PVGR++R +DF++++P  GL
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   LLLEVKDWKMETIHSLDRSSVTLLTPNGLKTASNPLEQVRQCAYQLVNRLESDPQLVNPS  120
            ++LEVKDW + T++  ++  VTL T   LK+  NPL QVR+ A + VN L +DP L +  
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GRYQGKLCFPYGYGVVLTQISREQFNS------SGMAEVMPEHQVICRDEMMESTDPEEF  174
            G+Y+G+L ++ +YGVV+T+I+R+Q+++      S++  + P  Q IC+DEM +S  PE F
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  175  QKRLWDMFNVSFARQMSLPQIDRVRWHIFPEIRIGDGQAGLFDETPADGAGGEEGNSADE  234
            ++++ +MF  +F  +++    D +R H+FPE+ + +                        
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQ---------------------  232

Query  235  LIPDLIKVMDMQQEQLARSLGQGHRVIHGVAGSGKTLILGYRCLYLARLLHKPILVICFN  294
                 IK+MD+QQE LAR++G+GHRVIHGVAGSGKT+IL +RCLYLA      ILV+C+N
Sbjct  233  -----IKIMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGKILVLCYN  287

Query  295  ITLAARLRGMMEAQAINDRVHVYHFHDWCGEQLKRYHVQRPAPGDRYLEELVARVIEATD  354
            ITLA+ LR  +EA+++  RV V HFH WC+  +KR  +Q  +    Y E   + + EA +
Sbjct  288  ITLASYLRECIEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVN  347

Query  355  KGQIPRGQYGALMIDEGHDFDADWLRLVVQMVDPDEGSLLLLYDDAQSIYKKNRALDFSL  414
             G+I R  Y+A+++DEGHDFD+ WL L+ ++ D    SLLL+YDDAQSIY+++RAL+FSL
Sbjct  348  SGKITRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSL  407

Query  415  SSVGIQARGRTTILKLNYRNTNEILDFAYRFAKHYLNPTDSDEDHVPLVEPQAAGRHGPP  474
            +SVG+QA+GRT++L +NYRN + IL+FAY F+++Y++  ++ E  +PLV+PQA+G +G  
Sbjct  408  ASVGVQAQGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNRE--IPLVQPQAGGEEGTE  465

Query  475  PYLKLCSSLDEEIRYIAHTLSRLNREGVLWRDMAVTCHSRNLAKQLTKGLGASGIPVDSL  534
            P +  C+S  +E R +A+ L + +     W DMAV C +    KQL   +   GIP  + 
Sbjct  466  PEILRCASERDEARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATC  525

Query  535  VESVEKKAFDPARDSVKVMTMHSSKGLEFpvvvipgigglpgQYDDPASDAKLLYVAMTR  594
             +S  KKA+   +D V ++T +SSKGLEFP V +   + +P+   D +    +LYVA TR
Sbjct  526  FDSEGKKAYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTR  585

Query  595  STDKLLLTASQESEFVKQL  613
            +T  LL+T  +E+ + ++L
Sbjct  586  ATRELLVTCYRENSISRHL  604

12) CJA_0632 in NC_010995


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  388 bits (1460),  Expect = 4e-109, Method: Compositional matrix adjust.
 Identities = 253/613 (42%), Positives = 387/613 (64%), Gaps = 26/613 (4%)

Query  1    MATIIPNIHASTTKMTTGERRFGQRLEKLLEDDYLCWFDVPVGQARRYPDFIILHPGRGL  60
            MA +I    ++  +MT GERR + RLE +L+DD + W+D+PVG+  R PDF+I++P+ GL
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   LFLEVKDWKLSTIQSMNHQTFTLLTASGAVNKPNPIEQARQCAYQVVNTLKHDKTLVQPK  120
            +FLEVKDW +ST++  N++  TL T +   +  NP+ Q R+ A + VN+L  D  L Q  
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GKHQGNLVCPYGYGVVFTNISRKQLQTALGEEG---ESILPAHLVICQDEMLEKTDPEEF  177
            G+ +G L  + +YGVVFT I+R+QL+T  G++    E I+P+   ICQDEM +   PE F
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  178  QQRLWAMFNYQFSQKLSLPQIDRIRAHLFPEIRIGTADLFAVTDAAASGAmdvvdivkvm  237
            +Q++ +MF   F  +++    D +RAHLFPE+ +     + + D                
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQIKIMDI---------------  238

Query  238  dmQQEQLARSFGEGHRVVHGVAGSGKTLILGFRCWYLARTQSKPILVLCYNISLAAKLRA  297
              QQE LAR++G+GHRV+HGVAGSGKT+IL FRC YLA T S  ILVLCYNI+LA+ LR 
Sbjct  239  --QQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGKILVLCYNITLASYLRE  296

Query  298  FMREKGIEQQVQVYHFHDWCGQQLRSYHIDLIDGAEPVWERQVLSVIQSVDQGHIPRAQY  357
             +  +G+  +V V HFH WC+  ++   I++  +     E+   ++ ++V+ G I R+ Y
Sbjct  297  CIEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGY  356

Query  358  GAVLIDEGHDFEAEWLKLVVQMIDPETNSLLLLYDDAQSIYKKKSNLNFTLSSVGIQARG  417
            +AVL+DEGHDF++ WL L+ +++D  + SLLL+YDDAQSIY++   LNF+L+SVG+QA+G
Sbjct  357  DAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQG  416

Query  418  RTSILKLNYRNTREILQFAFNFAKDFLQEKDADEDSVPLVKPEVGGKSGMAPEFRKLNNR  477
            RTS+L +NYRN + IL+FA+ F++++++  +  E  +PLV+P+ GG  G  PE+ +  + 
Sbjct  417  RTSVLPVNYRNPKRILHFAYAFSREYFEKHQNRE--IPLVQPQAGGEEGTEPEILRCASE  474

Query  478  PEELTFIRRCLQKWHSDGVAWNEMAVIYCHHHFG-EALARELNLYAIP-NLCMRDNKTRR  535
             +E   +   L+K+H+    W++MAV+ C  +F+   L   +   +IP   C  D+  ++
Sbjct  475  RDEARQVADWLEKRHALCGHWSDMAVL-CPAEFSVKQLKEVMTQRGIPFATCF-DSEGKK  532

Query  536  QYDPSDDQVLLVTRPSSKGLEFPRVIVAELGALQDDEEKRAEEVRLLYVAMTRAQETLLL  595
             Y    D V L+T  SSKGLEFP V V + + +  +    +E + +LYVA TRA   LL+
Sbjct  533  AYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLV  592

Query  596  TASGENSYVRRLG  608
            T   ENS  R+L 
Sbjct  593  TCYRENSISRHLE  605

13) rep [C] in NC_019902


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  385 bits (1449),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 238/594 (41%), Positives = 380/594 (64%), Gaps = 22/594 (3%)

Query  1    MTGGEKRFARRLEAKLEDDYLVWYDVPVGSRGFHPDFIVLHPRRGLLVLEVKDWRLDTIK  60
            MT GE+R A RLE+ L+DD +VWYD+PVG +  HPDF++++P  GL+ LEVKDW + T++
Sbjct  28   MTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGLVFLEVKDWTVSTLR  87

Query  61   AIHRFRASILTARGLVSEANPLEQARGYACAIASLLQKDPALVASGGHPYAGKLLFPWGY  120
              ++ + ++ T   L SE NPL Q R YAC   + L  DP L  ++G+ Y G+L ++W+Y
Sbjct  88   KANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQNDGQ-YKGRLNLAWAY  146

Query  121  GAVLANITRRQF------ESTDLGEVLAPHQVICQDEILEDVDTEAFQQKLWGMFSVQFG  174
            G V++ ITR+Q+      + + +  ++++ Q ICQDE+ + V  E F+QK+ GMF+  F 
Sbjct  147  GVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVFRQKIAGMFTTGFR  206

Query  175  EVLTLPQIDRIRWHIFPEIRIGAAQAELFENTEEPLPDLLRVMDLQQEQLARSLGEGHRV  234
              +T    D +R H+FPE+ +                  +++MD+QQE LAR++G+GHRV
Sbjct  207  TRVTPRMRDILRAHLFPEVTVKQKSQ-------------IKIMDIQQEILARNIGDGHRV  253

Query  235  IHGVAGSGKTMILAYRCLHLARAMNRPILALCFNVPLATRLEALLREQGLEDQVSVRSFH  294
            IHGVAGSGKTMIL +RCL LA + +  IL LC+N+ LA+ L   +  +GL  +V+V  FH
Sbjct  254  IHGVAGSGKTMILLFRCLYLAETTSGKILVLCYNITLASYLRECIEARGLASRVTVSHFH  313

Query  295  AWCRSQLVHYHVPLPSDGKDYADQLVQRVIKAVDRQQIPAGQYGAVLIDEGHDFAAHWLK  354
            +WC S + +  + + +D KDY+++    +  AV+  +I    Y+AVL+DEGHDF ++WL 
Sbjct  314  SWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGYDAVLVDEGHDFDSRWLA  373

Query  355  LLAQMVDPATNALLLLYDDAQSIYGKSRRGKFSFKSVGIQAQGRTTILKLNYRNTTEVLR  414
            L+A++ D A+ +LLL+YDDAQSIY + R  +FS+ SVG+QAQGRT++L +NYRN   +L+
Sbjct  374  LIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQGRTSVLPVNYRNPKRILH  433

Query  415  LAHAFAKDVLTPADADEDGVPLVLPESSARHGPPPELVRLPSFSAEADYIADRLCALHGE  474
            +A AF+++ +   +  E  +PLV P++++ +G  PE++R +S   EA  +AD+L   H+ 
Sbjct  434  FAYAFSREYFEKHQNRE--IPLVQPQAGGEEGTEPEILRCASERDEARQVADWLEKRHAL  491

Query  475  GTPWRDMAIVYRNHFMGEKLTSRLAAAGVPVDWLHRSHDSRRYRTGEDSVKVVTFHSSKG  534
               W DMA++   +F   +L   ++  G+P      S++ + Y    D V ++T++SSKG
Sbjct  492  CGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFDSEGKKAYSRRKDVVHLLTYQSSKG  551

Query  535  LEFPVVAIPGMGYLPHEHDDPEDEVRLMYVAMTRAMERLVITYHRESAFVARLA  588
            LEFP VA+   +++P    D  + + ++YVA TRA   L++T  RE+++  +L 
Sbjct  552  LEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHLE  605

14) SEEB0189_19710 in NC_021844


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  385 bits (1447),  Expect = 4e-108, Method: Compositional matrix adjust.
 Identities = 253/609 (42%), Positives = 398/609 (66%), Gaps = 23/609 (3%)

Query  1    MAIIIPTVSSCSEKITAGEKRLARLLERGLSDSCTCWYDTPMGKQHSHPDFVILTPDKGI  60
            MA +I   +S  E++T+GE+R+A  LE  L+D C  WYD P+G+++ HPDFVI+ PD+G+
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   LFIEVKDWFITKIKGANKTYVQYETKNGIESLKNPIEQVRQYAFQTINSLKTDPQLRQQE  120
            +F+EVKDW ++ ++ AN+  V  ET   + S  NP+ QVR+YA +T+N+L +DP LRQ++
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GQYQGSFVMPYGYGVYLANISRSQLEK--AFSPTELADILPTDKVICKDELNEFMSQEKV  178
            GQY+G + ++ +YGV ++ I+R QL    +   + +  I+P+ + IC+DE+ + +  E  
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  179  AARLALLAKYNFAHQTTPQQLDRIRWHLYPDIRIHKPIKQADVKNFTLHTPSIISIMDRQ  238
              ++A +    F  + TP+  D +R HL+P++              T+   S I IMD Q
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEV--------------TVKQKSQIKIMDIQ  239

Query  239  QEQLARSMGSGHRVIHGVAGSGKTLILLHRCLELANNIENEKPVLVICYNITLARKLRAL  298
            QE LAR++G GHRVIHGVAGSGKT+ILL RCL LA+       +LV+CYNITLA  LR  
Sbjct  240  QEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGK--ILVLCYNITLASYLREC  297

Query  299  IEKHTLRLPVEVTHFHLWCHQQLQSYG-RLPPKSKNFVELMENALSIAFEDGIIQPEQYS  357
            IE + L   V V+HFH WC   ++  G ++    K++ E   +AL  A + G I    Y 
Sbjct  298  IEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGYD  357

Query  358  AVLIDEGHDFNPEWLRILTRMADTKNNTLLFLYDDAQSIYQKKKALDFTLSSVGIKAQGR  417
            AVL+DEGHDF++ WL +++R+ D  + +LL++YDDAQSIY++ +AL+F+L+SVG++AQGR
Sbjct  358  AVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQGR  417

Query  418  TTILNINYRNTQQILHFASSIAFNYLNNHIEDALKYQQPDSGGIAGSYPE-LTCFDNQDE  476
            T++L +NYRN ++ILHFA +++ +Y+++H +  +   QP++GG  G+ PE L C  ++ +
Sbjct  418  TSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC-ASERD  476

Query  477  EITHILNWVIEQHQRGIPWFDIAILCPSTYSIKDVLGPQLTARNIPYQMIITSADKKNWS  536
            E  ++ +W+  +H     W D+A+LCP+ +S+K+ L   +T R IP+   + S +KK  S
Sbjct  477  EARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQ-LKEVMTQRGIPFATCFDSEGKKAYS  535

Query  537  PQQERLCVMPLPSSKGLEFQSVAVMDAA-RSKNEEDLSNDIKRLYVGFTRARYNLLITMN  595
             +++ + ++   SSKGLEF  VAV++A+  +    D S+ I  LYV+FTRA  +LL+T  
Sbjct  536  RRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCY  595

Query  596  GENALSAHL  604
             EN++S HL
Sbjct  596  RENSISRHL  604

15) SeD_A4939 in NC_011205


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  384 bits (1442),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 251/609 (42%), Positives = 398/609 (66%), Gaps = 23/609 (3%)

Query  1    MAIIIPTVSSCSEKITAGEKRLARLLERGLSDSCTCWYDTPMGKQHSHPDFVILTPDKGI  60
            MA +I   +S  E++T+GE+R+A  LE  L+D C  WYD P+G+++ HPDFVI+ PD+G+
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   LFIEVKDWFITKIKGANKTYVQYETKNGIESLKNPIEQVRQYAFQTINSLKTDPQLRQQE  120
            +F+EVKDW ++ ++ AN+  V  ET   + S  NP+ QVR+YA +T+N+L +DP LRQ++
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GQYQGSFVMPYGYGVYLSNISRSQLEK--AFSPTELADILPTDKVICKDELNEFMSQEKV  178
            GQY+G + ++ +YGV ++ I+R QL    +   + +  I+P+ + IC+DE+ + +  E  
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  179  AARLALLAKYNFAHQTTPQQLDRIRWHLYPDIRIHKPIKQADVKNFTLHTPSIISIMDRQ  238
              ++A +    F  + TP+  D +R HL+P++              T+   S I IMD Q
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEV--------------TVKQKSQIKIMDIQ  239

Query  239  QEQLARSMGSGHRVIHGVAGSGKSLILLHRCLELANNIENEKPVLVICYNITLARKLKAL  298
            QE LAR++G GHRVIHGVAGSGK++ILL RCL LA+       +LV+CYNITLA  L+  
Sbjct  240  QEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGK--ILVLCYNITLASYLREC  297

Query  299  IEKHTLRLPVEVTHFHLWCHQQLQSYG-RLPPKSKNFVELMENALSIAFEDGIIQPEQYS  357
            IE + L   V V+HFH WC   ++  G ++    K++ E   +AL  A + G I    Y 
Sbjct  298  IEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGYD  357

Query  358  AVLIDEGHDFNPEWLRILTRMADTKNNTLLFLYDDAQSIYQKKKALDFTLSSVGIKAQGR  417
            AVL+DEGHDF++ WL +++R+ D  + +LL++YDDAQSIY++ +AL+F+L+SVG++AQGR
Sbjct  358  AVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQGR  417

Query  418  TTILNINYRNTQQILHFASSIAFNYLNNHIEDALKYQQPDSGGIAGSYPE-LTCFDNQDE  476
            T++L +NYRN ++ILHFA +++ +Y+++H +  +   QP++GG  G+ PE L C  ++ +
Sbjct  418  TSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC-ASERD  476

Query  477  EITHILNWVIEQHQRGIPWFDIAILCPSTYSIKDVLGPQLTARNIPYQMIITSADKKNWS  536
            E  ++ +W+  +H     W D+A+LCP+ +S+K+ L   +T R IP+   + S +KK  S
Sbjct  477  EARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQ-LKEVMTQRGIPFATCFDSEGKKAYS  535

Query  537  PQQERLCVMPLPSSKGLEFQSVAVMDAA-RSKNEEDLSNDIKRLYVGFTRARYNLLITMN  595
             +++ + ++   SSKGLEF  VAV++A+  +    D S+ I  LYV+FTRA  +LL+T  
Sbjct  536  RRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCY  595

Query  596  GENALSEHL  604
             EN++S HL
Sbjct  596  RENSISRHL  604

16) Nhal_1170 in NC_013960


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  384 bits (1445),  Expect = 6e-108, Method: Compositional matrix adjust.
 Identities = 258/621 (42%), Positives = 390/621 (63%), Gaps = 39/621 (6%)

Query  1    MATLIPSLNSCLGRMQAGEKRFAYRLESHLEDDYLCWYEMPVGRRQRYSDFIIlhplrgl  60
            MA LI    S   RM +GE+R A RLES L+DD + WY++PVGR++R +DF+I++P  GL
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   lllEVKDWKRDTIQKIDKATATIITPSGLKIVSNPLEQVRQCTYQLIEHLEKDPQLINQS  120
            ++LEVKDW   T++K ++   T+ T + LK   NPL QVR+ + + ++ L  DP L ++ 
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GRYKGHLVFPYGYGVVLSNITRKQF------DATDLGEVLPEYQTLCKDEMVGSVDPEDF  174
            G+YKG+L ++ +YGVV++ ITR+Q+      D + +  ++P  QT+C+DEM  SV PE F
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  175  QERLWNMFKVQFSQPLTLPQIDRIRWHLFPEVRINAGDQGSLFPAESEEEKVEALLPDIV  234
            ++++  MF   F   +T    D +R HLFPEV ++   Q                    +
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQ--------------------I  233

Query  235  KVMDMQQELLARSMGEGHRVIHGVAGSGKTLILGYRCLYLAKLLHQPILVLCYNITLAAR  294
            K+MD+QQE+LAR++G+GHRVIHGVAGSGKT+IL +RCLYLA      ILVLCYNITLA+ 
Sbjct  234  KIMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGKILVLCYNITLASY  293

Query  295  LRELMAERGIGDKVNVYHFHDWCGEQLRTYHVDCPKPGEGYCERLVEKVIAAVEKGTIPK  354
            LRE +  RG++ +V V HFH WC+  ++   ++      +Y E+    +  AV+ G I +
Sbjct  294  LRECIEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITR  353

Query  355  AQYGAVMIDEGHDFEPEWLTLVVSMVDPETDSLLLLYDDAQSIYSKKRQLGFSLSSVGIR  414
            + Y+AV++DEGHDF++ WL+L+  + D  + SLLL+YDDAQSIY + R L FSL+SVG++
Sbjct  354  TGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQ  413

Query  415  AQGRTTVLKLNYRNTDEILGFAYRFASRYLSPSDKGEDHVPLVEPQSAERHGPPPAVRTF  474
            AQGRT+VL +NYRN   IL FAY F+  Y+   ++ E  +PLV+PQ++  +G  P +   
Sbjct  414  AQGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNRE--IPLVQPQAGGEEGTEPEILRC  471

Query  475  ESYEQEARYIARIFHRLHEEQDI--PWSEMCVTYRSNWMGEKLRRFFLAEGVP---CHWL  529
             S  +EAR +A   ++L+  + +   WS+M V   ++    +L+      G+P   C   
Sbjct  472  ASERDEARQVA---DWLEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCF--  526

Query  530  GNAKAKKQFKASHDSVKLMTMHSSKGLEFPVVAVSGVGYMAAEGEDLVPEAKLLYVAMTR  589
             ++ +KK +    D V L+T +SSKGLEFP VAV   +++++   D      +LYVA TR
Sbjct  527  -DSEGKKAYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTR  585

Query  590  STEKLLITSHRETAFLAQLQD  610
            +T  LL+T  RE ++  +L+D
Sbjct  586  ATRELLVTCYRENSISRHLED  606

17) ROD_48331 in NC_013716


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  384 bits (1445),  Expect = 6e-108, Method: Compositional matrix adjust.
 Identities = 248/612 (41%), Positives = 402/612 (66%), Gaps = 25/612 (4%)

Query  1    MAIIIPTINSCSEKMTAGEKRLARLLEGGLSDSCTCWYDTPMGKKHNHPDFVILAPDKGL  60
            MA +I    S  E+MT+GE+R+A  LE+ L+D C  WYD P+G+K+ HPDFVI+ PD+GL
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   MFIEVKDWFITKIKSANKTNIQYETPNGTESFKNPIEQVRQYTFDTIDNLKKDRQLCQQN  120
            +F+EVKDW ++ ++ AN+ ++  ET     S  NP+ QVR+Y+ DT++ L  D  L Q++
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GDYQGSFILPYGYGVYFTNITRTQLEKAFPADK---LNEILPSEHIICKDEINEFMPREK  177
            G+Y+G + L+ +YGV FT ITR QL K+++++    ++ I+PS + IC+DE+ + +  E 
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQL-KTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEV  192

Query  178  ISLRLNKLIKHKFSYKPTPQQLDRIRWHLYPDVRINKSATQSAAGNFSLNTPDIISIMDR  237
            +  ++  ++   F  + TP+  D +R HL+P+V +++ +               I IMD 
Sbjct  193  FRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQ--------------IKIMDI  238

Query  238  QQEQLARSMGGGHRVIHGVAGSGKTLILLHRCIEIANNIENDKPILVICYNITLARKLKP  297
            QQE LAR++G+GHRVIHGVAGSGKT+ILL RC+ +A+       ILV+CYNITLA  L+ 
Sbjct  239  QQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGK--ILVLCYNITLASYLRE  296

Query  298  LIEQHNVRLPVIVTHFHSWCYQQLNNHNL-LPPPGKNYISQMENTLSQAFEDGIIESEQY  356
             IE + +   V V+HFHSWC   ++ H + +    K+Y  +  ++L +A + G I    Y
Sbjct  297  CIEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGY  356

Query  357  SAVLIDEGHDFKQEWLKILAQMPDKKDNALLFLYDDTQSIYQKKKSLDFTLSSVDIKAIG  416
             AVL+DEGHDF   WL ++A++ D+   +LL++YDD+QSIY++ ++L+F+L+SV+++A G
Sbjct  357  DAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQG  416

Query  417  RTTILNINYRNTRQILHFASSIAFNYLNNHIDDTLKYQQPDAGGIAGIYPD-LACFDNQD  475
            RT++L +NYRN ++ILHFA +++ +Y+++H +  +   QP+AGG  G  P+ L C  ++ 
Sbjct  417  RTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC-ASER  475

Query  476  EEMTHVLDWVVKQRQQGVPWAEIAILCPSTYSIASTLEPRLTARKIPYQIIVSGEDKKKW  535
            +E  +V DW+ K++     W+++A+LCP+ +S+   L   +T R IP+     +E+KK  
Sbjct  476  DEARQVADWLEKRHALCGHWSDMAVLCPAEFSV-KQLKEVMTQRGIPFATCFDSEGKKAY  534

Query  536  SPDKDLLCVMPLPSSKGLEFQSVAVMDAAKVRDD-SDLSDDIKRLYVGFTRARQNLLVTM  594
            S  KD++ ++   SSKGLEF  VAV++A+ V  + +D S+ I  LYV+FTRA ++LLVT 
Sbjct  535  SRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTC  594

Query  595  HGNGTLCDHIIE  606
              + ++  H+ +
Sbjct  595  YRENSISRHLED  606

18) SEN4292 in NC_011294


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  384 bits (1444),  Expect = 7e-108, Method: Compositional matrix adjust.
 Identities = 252/609 (42%), Positives = 398/609 (66%), Gaps = 23/609 (3%)

Query  1    MAIIIPTVSSCSEKITAGEKRLARLLERGLSDSCTCWYDTPMGKQHSHPDFVILTPDKGI  60
            MA +I   +S  E++T+GE+R+A  LE  L+D C  WYD P+G+++ HPDFVI+ PD+G+
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   LFIEVKDWFITKIKGANKTYVQYETKNGIESLKNPIEQVRQYAFQTINSLKTDPQLRQQE  120
            +F+EVKDW ++ ++ AN+  V  ET   + S  NP+ QVR+YA +T+N+L +DP LRQ++
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GQYQGSFVMPYGYGVYLSNISRSQLEK--AFSPTELADILPTDKVICKDELNEFMSQEKV  178
            GQY+G + ++ +YGV ++ I+R QL    +   + +  I+P+ + IC+DE+ + +  E  
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  179  AARLALLAKYNFAHQTTPQQLDRIRWHLYPDIRIHKPIKQADVKNFTLHTPSIISIMDRQ  238
              ++A +    F  + TP+  D +R HL+P++              T+   S I IMD Q
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEV--------------TVKQKSQIKIMDIQ  239

Query  239  QEQLARSMGSGHRVIHGVAGSGKTLILLHRCLELANNIENEKPVLVICYNITLARKLKAL  298
            QE LAR++G GHRVIHGVAGSGKT+ILL RCL LA+       +LV+CYNITLA  L+  
Sbjct  240  QEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGK--ILVLCYNITLASYLREC  297

Query  299  IEKHTLRLPVEVTHFHLWCHQQLQSYG-RLPPKSKNFVELMENALSIAFEDGIIQPEQYS  357
            IE + L   V V+HFH WC   ++  G ++    K++ E   +AL  A + G I    Y 
Sbjct  298  IEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGYD  357

Query  358  AVLIDEGHDFNPEWLRILTRMADTKNNTLLFLYDDAQSIYQKKKALDFTLSSVGIKAQGR  417
            AVL+DEGHDF++ WL +++R+ D  + +LL++YDDAQSIY++ +AL+F+L+SVG++AQGR
Sbjct  358  AVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQGR  417

Query  418  TTILNINYRNTQQILHFASSIAFNYLNNHIEDALKYQQPDSGGIAGSYPE-LTCFDNQDE  476
            T++L +NYRN ++ILHFA +++ +Y+++H +  +   QP++GG  G+ PE L C  ++ +
Sbjct  418  TSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC-ASERD  476

Query  477  EITHILNWVIEQHQRGIPWFDIAILCPSTYSIKDVLGPQLTARNIPYQMIITSADKKNWS  536
            E  ++ +W+  +H     W D+A+LCP+ +S+K+ L   +T R IP+   + S +KK  S
Sbjct  477  EARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQ-LKEVMTQRGIPFATCFDSEGKKAYS  535

Query  537  PQQERLCVMPLPSSKGLEFQSVAVMDAA-RSKNEEDLSNDIKRLYVGFTRARYNLLITMN  595
             +++ + ++   SSKGLEF  VAV++A+  +    D S+ I  LYV+FTRA  +LL+T  
Sbjct  536  RRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCY  595

Query  596  GENALSEHL  604
             EN++S HL
Sbjct  596  RENSISRHL  604

19) SG4357 in NC_011274


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  384 bits (1444),  Expect = 7e-108, Method: Compositional matrix adjust.
 Identities = 252/609 (42%), Positives = 398/609 (66%), Gaps = 23/609 (3%)

Query  1    MAIIIPTVSSCSEKITAGEKRLARLLERGLSDSCTCWYDTPMGKQHSHPDFVILTPDKGI  60
            MA +I   +S  E++T+GE+R+A  LE  L+D C  WYD P+G+++ HPDFVI+ PD+G+
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   LFIEVKDWFITKIKGANKTYVQYETKNGIESLKNPIEQVRQYAFQTINSLKTDPQLRQQE  120
            +F+EVKDW ++ ++ AN+  V  ET   + S  NP+ QVR+YA +T+N+L +DP LRQ++
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GQYQGSFVMPYGYGVYLSNISRSQLEK--AFSPTELADILPTDKVICKDELNEFMSQEKV  178
            GQY+G + ++ +YGV ++ I+R QL    +   + +  I+P+ + IC+DE+ + +  E  
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  179  AARLALLAKYNFAHQTTPQQLDRIRWHLYPDIRIHKPIKQADVKNFTLHTPSIISIMDRQ  238
              ++A +    F  + TP+  D +R HL+P++              T+   S I IMD Q
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEV--------------TVKQKSQIKIMDIQ  239

Query  239  QEQLARSMGSGHRVIHGVAGSGKTLILLHRCLELANNIENEKPVLVICYNITLARKLKAL  298
            QE LAR++G GHRVIHGVAGSGKT+ILL RCL LA+       +LV+CYNITLA  L+  
Sbjct  240  QEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGK--ILVLCYNITLASYLREC  297

Query  299  IEKHTLRLPVEVTHFHLWCHQQLQSYG-RLPPKSKNFVELMENALSIAFEDGIIQPEQYS  357
            IE + L   V V+HFH WC   ++  G ++    K++ E   +AL  A + G I    Y 
Sbjct  298  IEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGYD  357

Query  358  AVLIDEGHDFNPEWLRILTRMADTKNNTLLFLYDDAQSIYQKKKALDFTLSSVGIKAQGR  417
            AVL+DEGHDF++ WL +++R+ D  + +LL++YDDAQSIY++ +AL+F+L+SVG++AQGR
Sbjct  358  AVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQGR  417

Query  418  TTILNINYRNTQQILHFASSIAFNYLNNHIEDALKYQQPDSGGIAGSYPE-LTCFDNQDE  476
            T++L +NYRN ++ILHFA +++ +Y+++H +  +   QP++GG  G+ PE L C  ++ +
Sbjct  418  TSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC-ASERD  476

Query  477  EITHILNWVIEQHQRGIPWFDIAILCPSTYSIKDVLGPQLTARNIPYQMIITSADKKNWS  536
            E  ++ +W+  +H     W D+A+LCP+ +S+K+ L   +T R IP+   + S +KK  S
Sbjct  477  EARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQ-LKEVMTQRGIPFATCFDSEGKKAYS  535

Query  537  PQQERLCVMPLPSSKGLEFQSVAVMDAA-RSKNEEDLSNDIKRLYVGFTRARYNLLITMN  595
             +++ + ++   SSKGLEF  VAV++A+  +    D S+ I  LYV+FTRA  +LL+T  
Sbjct  536  RRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCY  595

Query  596  GENALSEHL  604
             EN++S HL
Sbjct  596  RENSISRHL  604

20) SPUCDC_4504 in NC_022221


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  381 bits (1434),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 251/609 (42%), Positives = 397/609 (66%), Gaps = 23/609 (3%)

Query  1    MAIIIPTVSSCSEKITAGEKRLARLLERGLSDSCTCWYDTPMGKQHSHPDFVILTPDKGI  60
            MA +I   +S  E++T+GE+R+A  LE  L+D C  WYD P+G+++ HPDFVI+ PD+G+
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   LFIEVKDWFITKIKGANKTYVQYETKNGIESLKNPIEQVRQYAFQTINSLKTDPQLRQQE  120
            +F+EVKDW ++ ++ AN+  V  ET   + S  NP+ QVR+YA +T+N+L +DP LRQ++
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GQYQGSFVMPYGYGVYLSNISRSQLEK--AFSPTELADILPTDKVICKDELNEFMSQEKV  178
            GQY+G + ++ +YGV ++ I+R QL    +   + +  I+P+ + IC+DE+ + +  E  
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  179  AARLALLAKYNFAHQTTPQQLDRIRWHLYPDIRIHKPIKQADVKNFTLHTPSIISIMDRQ  238
              ++A +    F  + TP+  D +R HL+P++              T+   S I IMD Q
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEV--------------TVKQKSQIKIMDIQ  239

Query  239  QEQLARSMGSGHRVIHGVAGSGKTLILLHRCLELANNIENEKPVLVICYNITLARKLKAL  298
            QE LAR++G GHRVIHGVAGSGKT+ILL RCL LA+       +LV+CYNITLA  L+  
Sbjct  240  QEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGK--ILVLCYNITLASYLREC  297

Query  299  IEKHTLRLPVEVTHFYLWCHQQLQSYG-RLPPKSKNFVELMENALSIAFEDGIIQPEQYS  357
            IE + L   V V+HF  WC   ++  G ++    K++ E   +AL  A + G I    Y 
Sbjct  298  IEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGYD  357

Query  358  AVLIDEGHDFNPEWLRILTRMADTKNNTLLFLYDDAQSIYQKKKALDFTLSSVGIKAQGR  417
            AVL+DEGHDF++ WL +++R+ D  + +LL++YDDAQSIY++ +AL+F+L+SVG++AQGR
Sbjct  358  AVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQGR  417

Query  418  TTILNINYRNTQQILHFASSIAFNYLNNHIEDALKYQQPDSGGIAGSYPE-LTCFDNQDE  476
            T++L +NYRN ++ILHFA +++ +Y+++H +  +   QP++GG  G+ PE L C  ++ +
Sbjct  418  TSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC-ASERD  476

Query  477  EITHILNWVIEQHQRGIPWFDIAILCPSTYSIKDVLGPQLTARNIPYQMIITSADKKNWS  536
            E  ++ +W+  +H     W D+A+LCP+ +S+K+ L   +T R IP+   + S +KK  S
Sbjct  477  EARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQ-LKEVMTQRGIPFATCFDSEGKKAYS  535

Query  537  PQQERLCVMPLPSSKGLEFQSVAVMDAA-RSKNEEDLSNDIKRLYVGFTRARYNLLITMN  595
             +++ + ++   SSKGLEF  VAV++A+  +    D S+ I  LYV+FTRA  +LL+T  
Sbjct  536  RRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCY  595

Query  596  GENALSEHL  604
             EN++S HL
Sbjct  596  RENSISRHL  604

21) SPUL_4517 in NC_016831


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  381 bits (1434),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 251/609 (42%), Positives = 397/609 (66%), Gaps = 23/609 (3%)

Query  1    MAIIIPTVSSCSEKITAGEKRLARLLERGLSDSCTCWYDTPMGKQHSHPDFVILTPDKGI  60
            MA +I   +S  E++T+GE+R+A  LE  L+D C  WYD P+G+++ HPDFVI+ PD+G+
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   LFIEVKDWFITKIKGANKTYVQYETKNGIESLKNPIEQVRQYAFQTINSLKTDPQLRQQE  120
            +F+EVKDW ++ ++ AN+  V  ET   + S  NP+ QVR+YA +T+N+L +DP LRQ++
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GQYQGSFVMPYGYGVYLSNISRSQLEK--AFSPTELADILPTDKVICKDELNEFMSQEKV  178
            GQY+G + ++ +YGV ++ I+R QL    +   + +  I+P+ + IC+DE+ + +  E  
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  179  AARLALLAKYNFAHQTTPQQLDRIRWHLYPDIRIHKPIKQADVKNFTLHTPSIISIMDRQ  238
              ++A +    F  + TP+  D +R HL+P++              T+   S I IMD Q
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEV--------------TVKQKSQIKIMDIQ  239

Query  239  QEQLARSMGSGHRVIHGVAGSGKTLILLHRCLELANNIENEKPVLVICYNITLARKLKAL  298
            QE LAR++G GHRVIHGVAGSGKT+ILL RCL LA+       +LV+CYNITLA  L+  
Sbjct  240  QEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGK--ILVLCYNITLASYLREC  297

Query  299  IEKHTLRLPVEVTHFYLWCHQQLQSYG-RLPPKSKNFVELMENALSIAFEDGIIQPEQYS  357
            IE + L   V V+HF  WC   ++  G ++    K++ E   +AL  A + G I    Y 
Sbjct  298  IEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGYD  357

Query  358  AVLIDEGHDFNPEWLRILTRMADTKNNTLLFLYDDAQSIYQKKKALDFTLSSVGIKAQGR  417
            AVL+DEGHDF++ WL +++R+ D  + +LL++YDDAQSIY++ +AL+F+L+SVG++AQGR
Sbjct  358  AVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQGR  417

Query  418  TTILNINYRNTQQILHFASSIAFNYLNNHIEDALKYQQPDSGGIAGSYPE-LTCFDNQDE  476
            T++L +NYRN ++ILHFA +++ +Y+++H +  +   QP++GG  G+ PE L C  ++ +
Sbjct  418  TSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRC-ASERD  476

Query  477  EITHILNWVIEQHQRGIPWFDIAILCPSTYSIKDVLGPQLTARNIPYQMIITSADKKNWS  536
            E  ++ +W+  +H     W D+A+LCP+ +S+K+ L   +T R IP+   + S +KK  S
Sbjct  477  EARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQ-LKEVMTQRGIPFATCFDSEGKKAYS  535

Query  537  PQQERLCVMPLPSSKGLEFQSVAVMDAA-RSKNEEDLSNDIKRLYVGFTRARYNLLITMN  595
             +++ + ++   SSKGLEF  VAV++A+  +    D S+ I  LYV+FTRA  +LL+T  
Sbjct  536  RRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCY  595

Query  596  GENALSEHL  604
             EN++S HL
Sbjct  596  RENSISRHL  604

22) R2APBS1_1138 in NC_020541


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  374 bits (1407),  Expect = 6e-105, Method: Compositional matrix adjust.
 Identities = 256/619 (42%), Positives = 380/619 (62%), Gaps = 33/619 (5%)

Query  1    MATLIPTRNSCLPRMTGGEKRVSERLEQKLEDDYLLWYDVPVGLKQRHPDFVVFHPRRGL  60
            MA LI    S   RMT GE+RV+ RLE  L+DD ++WYD+PVG K+RHPDFV+++P  GL
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   LVLEVKDWKADTIRHADSTQFTLVTERGLVKEANPLLQARAYALEIGVVLERDPALRHPE  120
            + LEVKDW   T+R A+  Q TL T+  L  E NPL+Q R YA +    L  DP LR+ +
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GSRYAGKLIMPWGWGVVLANITRKQF------DEGGLGEVLPEHLVICRDELYETVDAEV  174
            G +Y G+L ++W+ GVV++ ITR+Q+      DE+++  ++P    IC+DE+ ++V +EV
Sbjct  134  G-QYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEV  192

Query  175  FQQRLWAMFPQVYPVALTLPQIDRVRWHLFPELRVEAGSGQFGLFGPTDAAVRPLEIPDL  234
            F+Q++ +MF   +   +T    D +R HLFPE+ V   S                     
Sbjct  193  FRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQ--------------------  232

Query  235  VKVMDTQQEQLARSIGGEHRIIHGVAGSGKTMILGFRAMQLARELSKPILVLCYNKTLAA  294
            +K+MD QQE LAR+IG+ HR+IHGVAGSGKTMIL FR + LA   S  ILVLCYN TLA+
Sbjct  233  IKIMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGKILVLCYNITLAS  292

Query  295  RLEQLIGERGLSEKVQVYNFHKWCRKMLVAYHEPLPPGSGKAFVEALPPAVIAGVDRGRI  354
             L + I  RGL+ +V V +FH WC  M+   H        K + E   +A+  +V+ G+I
Sbjct  293  YLRECIEARGLASRVTVSHFHSWCASMVKR-HGIQVTTDRKDYPEKCFSALEEAVNSGKI  351

Query  355  PRAQYGAVLVDEGHDFEPDWYKLIVQMIDPATNSLLVLYDDAQNIYGNPNRRKISWKSLG  414
             R+ Y+AVLVDEGHDF++ W  LI +++D A+ SLL++YDDAQ+IY      ++S  S+G
Sbjct  352  TRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVG  411

Query  415  VQAQGRTTILKLNYRNTLEILSVARTFAQDLLASRSDEADGDGVPLVAPESAGRRGAVPE  474
            VQAQGRT++L +NYRN   IL  A +F+++ +    +  +   +PLV P+++G  G+ PE
Sbjct  412  VQAQGRTSVLPVNYRNPKRILHFAYAFSREYF----EKHQNREIPLVQPQAGGEEGTEPE  467

Query  475  LVRTDTARAQMDVLIARLRDEHAHGRPYSEMAVIYRNQWEGEKLHEVLRDLGIPSRLA-D  533
            ++R  + R +   +  +L   HA     S+MAV+   +    +L EV+ + GIP     D
Sbjct  468  ILRCASERDEARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFD  527

Query  534  NTGKQSLFAVEDSIKLVTMHSSKGLEFPFVIIPGIGGLPKEGQSEADEARLLYVAMTRAT  593
            + GK++     D + L+T +SSKGLEFP+V +   + +P     E++   +LYVA TRAT
Sbjct  528  SEGKKAYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRAT  587

Query  594  EHLLLIHHLDSVFSRRIRD  612
             +LL+    ++ +SR++ D
Sbjct  588  RELLVTCYRENSISRHLED  606

23) Daci_3682 in NC_010002


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  362 bits (1359),  Expect = 3e-101, Method: Compositional matrix adjust.
 Identities = 248/608 (41%), Positives = 387/608 (64%), Gaps = 24/608 (3%)

Query  1    MAVLIPAMGACVGRMTPGERRLAERLEQKLEDDYMLWYDVPIGPKQTHPDFVVIHPRRGV  60
            MA LI   ++   RMTPGERR+A RLE  L+DD  +WYD+P+G K+ HPDFV+I+P  G+
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   LILETKDWRLETVQEATKQAWTLIVDERPKVVINPAAQARHCAIQVVNALERDQQLIHDE  120
            ++LE KDW + T++ A ++  TL  D   K  INP  Q R+ A + VNAL  D  L +++
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GPHQGKLAFPWGSGVVFTNITRKQF------EESALDQTIDAHLVICKDEMLESVDAEAF  174
            G  +G+L ++W+ GVVFT ITR+Q+      +ESA+++ + +   IC+DEM +SV +E F
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  175  QQRLWNMFPHAFGKAMSVPQLERTRWIMFPQVRVPVQGSLLPEDADELPDIMRVMDLQQE  234
            +Q++  MF  +F          RTR  + P++R  +++ L+PE +      +++MD+QQE
Sbjct  194  RQKIAGMFTTGF----------RTR--VTPRMRDILRAHLFPEVTVKQKSQIKIMDIQQE  241

Query  235  QLARSLGDGHRVIHGVAGSGKTMILGYRAEHLAKTASTKPILVLCYNEPLAVKLNAWFAA  294
             LAR++GDGHRVIHGVAGSGKTMIL +R   LA T+S K ILVLCYN  LA  L   + A
Sbjct  242  ILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGK-ILVLCYNITLASYLRECIEA  300

Query  295  KGLADRVHARNFHKWCRQQLVAYGQTLPAQGPGMFDQMVEFVIRGVDRQQIPSGQYQAVM  354
            +GLA RV   +FH WC   +   G  + ++  +  ++    +  +V+  +I    Y+AV+
Sbjct  301  RGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNSGKITRTGYDAVL  360

Query  355  VDEGHDFQPEWLKLVTQMVDPETNSLLILYDSAQNIYGKSKARGFSFKSVGIQASGRTTI  414
            VDEGHDF++ WL L++++ D  + SLL++YD AQ+IY + +A  FS+ SVG+QA GRT++
Sbjct  361  VDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLASVGVQAQGRTSV  420

Query  415  LKINYRNTRQILQIANRVAAEFLQPNAQDDDGVPLVQPISCGREGQEPLIVRLPSLRDEP  474
            L +NYRN ++IL++A   + E+++   +++  +PLVQP + G EG EP I+R +S RDE+
Sbjct  421  LPVNYRNPKRILHFAYAFSREYFE--KHQNREIPLVQPQAGGEEGTEPEILRCASERDEA  478

Query  475  AKIAELLAAAHQEGHAWGDMAILCRDHDSMNQCALALGRRKLPHRVRHRSGD---FDPLA  531
             ++A+ L   H     W+DMA+LC  + S++Q    + +R +P      S +   +    
Sbjct  479  RQVADWLEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCFDSEGKKAYSRRK  538

Query  532  DTIKVMTMHASKGLEFPVVAVAGVGQMPREGEDAADEAKLFYVAATRATQKLVLTVAGEG  591
            D + ++T ++SKGLEFP VAV   + +P    D ++   ++YVA TRAT+ L++T   E 
Sbjct  539  DVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRATRELLVTCYREN  598

Query  592  AFAKALVD  599
            ++++ L D
Sbjct  599  SISRHLED  606

24) Rfer_4005 in NC_007908


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  361 bits (1357),  Expect = 5e-101, Method: Compositional matrix adjust.
 Identities = 251/605 (42%), Positives = 379/605 (63%), Gaps = 38/605 (6%)

Query  1    MATLIPALGACVSRMTGGERRLAERLEQKLDDDYLLWYDVPMGPKNAHPDFCVMHPRRGI  60
            MA LI   ++   RMT GERR+A RLE  L+DD ++WYD+P+G KN HPDF +++P  G+
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   LVLEVKDWKPSTIQQADKQTWTIIPDGIPKNVINPLEQARQYAHQVVNALERDPQLVQAD  120
            + LEVKDW  ST+++A+++  T+  DG+ K+ INPL Q R+YA + VNAL  DP L Q D
Sbjct  74   VFLEVKDWTVSTLRKANQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQND  133

Query  121  GPHAGKLAFPWSYGVVLTNITRKQF------EAAELQHAIEPHRVLCQDEMLESVGAEEL  174
            G   G+L ++W+YGVV+T ITR+Q+      + + ++  + + + +CQDEM +SV +E +
Sbjct  134  GQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPEVF  193

Query  175  QSRLWDMFPYMMRGVMSLPQLDRVRWIMFPQVRVPHGSTGQTALFddtdadadadaEMPS  234
            + ++ +MF    R  ++    D +R  +FP+V V + S                      
Sbjct  194  RQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQ---------------------  232

Query  235  IMRVMDIQQEQLARSLGDGHRVIHGVAGSGKTMILGYRAEYLAQARTASSKPILILCFNE  294
             +++MDIQQE LAR++GDGHRVIHGVAGSGKTMIL +R  YLA++ ++    IL+LC+N 
Sbjct  233  -IKIMDIQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTSGK---ILVLCYNI  288

Query  295  PLGVKLHSVMDAKGLSDKVHVRHFHKWCYDQLKYSGQAMPPQGPKFSEELVDRVIRAVDR  354
             L+  L+  ++A+GL+ +V V HFH WC   +K  G  +  +   ++E     +  AV+ 
Sbjct  289  TLASYLRECIEARGLASRVTVSHFHSWCASMVKRHGIQVTTDRKDYPEKCFSALEEAVNS  348

Query  355  KQIPSGQYQAVLIDEGHDFAPEWLKLVTQMVDPTTNSLLLLYDDAQSIYERARSKQFSFK  414
             +I    Y+AVL+DEGHDF + WL L++++ D ++ SLLL+YDDAQSIY R R+ +FS+ 
Sbjct  349  GKITRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLA  408

Query  415  SVGVQAQGRTTILKINYRNTKQILQTANliaadlltaddrdddGIPLVKPISCGREGQAP  474
            SVGVQAQGRT++L +NYRN K+IL+ A   A      + +++  IPLV+P + G EG  P
Sbjct  409  SVGVQAQGRTSVLPVNYRNPKRILHFAY--AFSREYFEKHQNREIPLVQPQAGGEEGTEP  466

Query  475  ILIKLPSLREEAFAIADQLSHAHKDGHAWGDMAILC-ADWKTMDLCADALHQRKLPFNV-  532
             +++ +S R+EA  +AD L   H     W+DMA+LC A+    +L  + + QR +PF   
Sbjct  467  EILRCASERDEARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQL-KEVMTQRGIPFATC  525

Query  533  --RKRTGEYNPAADAIQIMTMKVSKGLEFPVVALPGVGHMPAKGEDEQEAARVFYVAATR  590
                    Y+   D ++++T + SKGLEFP VA+   + +P+   DE E   V+YVA TR
Sbjct  526  FDSEGKKAYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTR  585

Query  591  ATQRL  595
            AT+ L
Sbjct  586  ATREL  590

25) Aave_4619 in NC_008752


> GQ497943|38|G38|291291762|ADD91733.1|Escherichia_coli_AL862|+|34311..36137|uvrD|-|putative 
uvrD/REP helicase
Length=608

 Score =  356 bits (1336),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 251/622 (41%), Positives = 391/622 (63%), Gaps = 37/622 (5%)

Query  1    MATLIPAIGSCTSRMTAGERRLAQRLERKLDGDYSVWYDVPVGPKQTYPDFVVMHPRRGV  60
            MA LI   +S   RMT+GERR+A RLE  L++D  VWYD+PVG K+  PDFV+++P  G+
Sbjct  14   MAKLINISASTEERMTPGERRVASRLESFLNDDCFVWYDIPVGRKNRHPDFVIIDPDNGL  73

Query  61   LILETKDWHLETVRKATRQYWEIAPD-GGVPKIVKNPLEQARHCALEVVRALERDPQLVQ  119
            ++LE KDW + T+RKA ++  +++ + +G+ K   NPL Q R+ A + V AL  DP L Q
Sbjct  74   VFLEVKDWTVSTLRKANQE--QVTLETDGLLKSEINPLVQVRRYACDTVNALPADPCLRQ  131

Query  120  PSGPHQGKLAFPWGHGVVFTRITRRQF------EAAGLAEAIAPDYVVCQDEMLEDVEPE  173
              G  +G+L ++W+ GVVFTRITR+Q+      + +++   +++   +CQDEM + V PE
Sbjct  132  NDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGNDESAVEKIFPSAQTICQDEMTQSVLPE  191

Query  174  AFQERLWRMFPHAFGAAMSLPQIDRVRWHMFPEVRVPVQGRLFAQYGGVDEVPDLLRVMD  233
             F++++  MF  +F + ++    D +R H+FPEV V  ++++              ++MD
Sbjct  192  VFRQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQKSQI--------------KIMD  237

Query  234  LQQEQLARSLGEGHRVIHGVAGSGKTMILGYRAEHLAKLHGALPDGAKPVLVLCYNEPLA  293
            +QQE LAR++G+GHRVIHGVAGSGKTMIL +R   LA         +  +LVLCYN  LA
Sbjct  238  IQQEILARNIGDGHRVIHGVAGSGKTMILLFRCLYLAE------TTSGKILVLCYNITLA  291

Query  294  VKLASAMEAKGLGEQVHCLHFHKWARAQLVAFGQGLPAPSLPREAFFAdmvdrvvrgvdm  353
              L   +EA+GL+ +V   HFH W  A +V   +G+   +  R  +       +  +V+ 
Sbjct  292  SYLRECIEARGLASRVTVSHFHSWC-ASMVK-RHGIQVTT-DRKDYPEKCFSALEEAVNS  348

Query  354  grIPSGQYAAVLIDEGHDFEPEWLRLVSRMVDPATNNLLLLYDDAQSIYARARQKQFSFR  413
            G+I    Y AVL+DEGHDF++ WL L++R+ D A+ +LLL+YDDAQSIY R R  +FS+ 
Sbjct  349  GKITRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALNFSLA  408

Query  414  SVGIQAQGRTSILKINYRNTRQILQTAHLIAADLLAPEDSGEDGVPLLQPVSCGRDGEAP  473
            SVG+QAQGRTS+L +NYRN ++IL+ A  ++ + +  +++ E  +PL+QP + G +G  P
Sbjct  409  SVGVQAQGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNRE--IPLVQPQAGGEEGTEP  466

Query  474  VVVRLPSFRAEAAQVADRLAAAHQEGHAWGDMAVLCRHYAQMEECATALRHKGLPHQV--  531
             ++R +S R EA QVAD+L   H     W+DMAVLC     + +    + ++G+P     
Sbjct  467  EILRCASERDEARQVADWLEKRHALCGHWSDMAVLCPAEFSVKQLKEVMTQRGIPFATCF  526

Query  532  -RKGTGSFHPADDTVKVMTMHASKGLEFPVVALVGAGHMPSDGEDEREEARLFYVAATRA  590
               G  ++    D V ++T ++SKGLEFP VA++ A+ +PS+  DE E   ++YVA TRA
Sbjct  527  DSEGKKAYSRRKDVVHLLTYQSSKGLEFPYVAVINASFVPSGVADESEVIPVLYVAFTRA  586

Query  591  THRLVITASGEGAFAQRLDGVG  612
            T+ L++T   E +++++L++ +
Sbjct  587  TRELLVTCYRENSISRHLEDFA  608