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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpD gene of AY597277

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Psyr_1196
( YP_234288.1 )

type III secretion protein HrpD

NC_007005
(Pseudomonas syringae B728a)

3e-54

2) hrpD
( NP_791212.1 )

type III secretion protein HrpD

NC_004578
(Pseudomonas syringae DC3000)

8e-54

3) hrpD
( YP_273535.1 )

type III secretion component protein HrpD

NC_005773
(Pseudomonas syringae 1448A)

6e-52

4) Pmen_0027
( YP_001185534.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

4e-31

• Sequence Alignments

1) Psyr_1196 in NC_007005


> AY597277|38|G38|51103009|AAT96156.1|Pseudomonas_viridiflava_LP23.1a|-|33133..33663|hrpD|-|HrpD
Length=176

 Score =  204 bits (758),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 114/172 (67%), Positives = 141/172 (82%), Gaps = 0/172 (0%)

Query  4    TAEDYWTQWWCNPWPWAHPGWQSRFAERCGLTVSDCEALMVSRHGVFLQSVGIMPSQPPM  63
            TA+D W +WWCNPW WAHP+WQ RFAE+ G+ +  C++LM SRH VFL+SVGI PSQPP 
Sbjct  5    TAQDLWVHWWCNPWRWAHPSWQQRFAEQQGIPMQACDSLMSSRHTVFLKSVGIEPSQPPE  64

Query  64   PAEPVLNWLALTPAQRDQALDLAQRICFSRNESDGDDGQWCWALTKALRPGVWLELEHED  123
            P EP+++W+AL+PAQRD+AL LAQ ICFSR E++G DGQWCW+LTKALRPGVWL  E  D
Sbjct  65   PVEPLMSWIALSPAQRDKALVLAQLICFSRTETEGVDGQWCWGLTKALRPGVWLAPEVVD  124

Query  124  ARLLLGAWLGPEYWSRLRLAWAPDEVAERPCAAPENKLQTLWQAVLWRVTAA  175
             R +LGAWLG  YWSRLRLAW+ + V +  C AP+NKLQTLWQAV+WR+++A
Sbjct  125  IRTVLGAWLGYAYWSRLRLAWPTEAVIDDLCEAPDNKLQTLWQAVMWRISTA  176

2) hrpD in NC_004578


> AY597277|38|G38|51103009|AAT96156.1|Pseudomonas_viridiflava_LP23.1a|-|33133..33663|hrpD|-|HrpD
Length=176

 Score =  202 bits (752),  Expect = 8e-54, Method: Compositional matrix adjust.
 Identities = 108/176 (62%), Positives = 144/176 (82%), Gaps = 0/176 (0%)

Query  1    MMSLSAEDHWIHWWCNPWQWAHSEWHDRFANARGLSVSDCDALMASRHGVFLQSLGIDPA  60
            M + +A+D W+HWWCNPW+WAH+ W++RFA+ +G+++  CD+LM+SRH VFL+S+GI+P+
Sbjct  1    MTGSTAQDLWVHWWCNPWRWAHPSWQQRFAEQQGIPMQACDSLMSSRHTVFLKSVGIEPS  60

Query  61   QPPAPAEPVLRWLALTPSQREQALSLAQCICFSRNESDGPDGQWCWGLTKALRPGVWLEF  120
            QPP P EP++ W+AL+P+QR++AL LAQ ICFSR E++G DGQWCWGLTKALRPGVWL  
Sbjct  61   QPPEPVEPLMSWIALSPAQRDKALVLAQLICFSRTETEGVDGQWCWGLTKALRPGVWLAP  120

Query  121  EHEDARLLLGAWLGPQYWSRLCLEWPPNEVPDTPGKAPENKLQALWQAIMWRVTAA  176
            E  D R +LGAWLG  YWSRL L WP + V D    AP+NKLQ+LWQA+MWR+++A
Sbjct  121  EVVDIRTVLGAWLGYAYWSRLRLAWPTEAVIDDLCEAPDNKLQTLWQAVMWRISTA  176

3) hrpD in NC_005773


> AY597277|38|G38|51103009|AAT96156.1|Pseudomonas_viridiflava_LP23.1a|-|33133..33663|hrpD|-|HrpD
Length=176

 Score =  196 bits (729),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 106/172 (62%), Positives = 137/172 (80%), Gaps = 0/172 (0%)

Query  4    IAEDHWVQWWCNPWQFAHPDWQSRFALNCGLTLSDCDGLIASRHSVFLQSVGIEPDQPPM  63
             A+D WV+WWCNPW+ AHP WQ RFA + G+ +  CD+L++SRH+VFL+SVGIEP QPP 
Sbjct  5    TAQDLWVHWWCNPWRWAHPSWQQRFAEQQGIPMQACDSLMSSRHTVFLKSVGIEPSQPPE  64

Query  64   PAEPVLRWLALTPLQRERALDLARRICFCRNESDGADGQWCWALTKALRPGVWLELANED  123
            P EP++ W+AL+P QR++AL LA+ ICF R E++G DGQWCW+LTKALRPGVWL     D
Sbjct  65   PVEPLMSWIALSPAQRDKALVLAQLICFSRTETEGVDGQWCWGLTKALRPGVWLAPEVVD  124

Query  124  PRLLLGAWLGPEYWSRLRLAWAPDELPDSPCEAPENKLQTLWQAILWRVTAV  175
             R +LGAWLG  YWSRLRLAW+ + + D  CEAP+NKLQTLWQA++WR+++ 
Sbjct  125  IRTVLGAWLGYAYWSRLRLAWPTEAVIDDLCEAPDNKLQTLWQAVMWRISTA  176

4) Pmen_0027 in NC_009439


> AY597277|38|G38|51103009|AAT96156.1|Pseudomonas_viridiflava_LP23.1a|-|33133..33663|hrpD|-|HrpD
Length=176

 Score =  127 bits (465),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 73/173 (43%), Positives = 116/173 (68%), Gaps = 7/173 (4%)

Query  2    SDAAERWVRWWCEAWHFAHPGWRRSSPVLAAAA--DCSH---SRHAALAQSLGIGATQPP  56
            S A + WV+WWC++W+ AHP+W++  +   + +   C     SRH+ + +S+GI ++QPP
Sbjct  4    STAQDLWVHWWCNPWRWAHPSWQQRFAEQQGIPMQACDSLMSSRHTVFLKSVGIEPSQPP  63

Query  57   PPHEGVLQWLALNERQRQHALALAQHICSAKAPCQALPADADWCRSLGKALRPGLWLTAE  116
             P E ++ W+AL+  QR+ AL LAQ IC +++  +++  D++WC++L KALRPG+WL++E
Sbjct  64   EPVEPLMSWIALSPAQRDKALVLAQLICFSRTETEGV--DGQWCWGLTKALRPGVWLAPE  121

Query  117  ATDPRLLLGAWAGPACWERLRLQWAPGSLEELPPDLPARRLATLWAAVLWRTS  169
              D R +LGAW G A W RLRL W+  ++ +   + P  +L TLW AV+WR S
Sbjct  122  VVDIRTVLGAWLGYAYWSRLRLAWPTEAVIDDLCEAPDNKLQTLWQAVMWRIS  174