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Homologs of lssG gene of AY144116

18

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) plu3759
( NP_930965.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

6e-37

96

2) lssG
( YP_003039896.1 )

regulator in type iii secretion lssg

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

4e-28

83

3) lcrG
( YP_001004070.1 )

low calcium response locus protein g

NC_008791
(Yersinia enterocolitica 8081)

2e-11

45

4) YE105_P0014
( YP_004424916.1 )

low calcium response locus protein G

NC_015475
(Yersinia enterocolitica 105.5R(r))

2e-11

44

5) Y11_p0861
( YP_006007934.1 )

type III secretion cytoplasmic plug protein (LcrG)

NC_017565
(Yersinia enterocolitica Y11)

2e-11

44

6) lcrG
( NP_995379.1 )

Yop regulator LcrG

NC_005813
(Yersinia pestis 91001)

6e-11

45

7) YPA_CD0079
( YP_636822.1 )

Yop regulator

NC_008122
(Yersinia pestis Antiqua)

6e-11

45

8) lcrG
( NP_395166.1 )

low calcium response protein G

NC_003131
(Yersinia pestis CO92)

6e-11

45

9) lcrG
( YP_005622022.1 )

putative Yop regulator

NC_017263
(Yersinia pestis Harbin 35)

6e-11

45

10) YPDSF_3985
( YP_001154614.1 )

Yop regulator

NC_009377
(Yersinia pestis Pestoides F)

6e-11

45

11) pYV0058
( YP_068467.1 )

lcrG; Yop regulator

NC_006153
(Yersinia pseudotuberculosis IP 32953)

6e-11

45

12) YPTS_4277
( YP_001874677.1 )

type III secretion protein LcrG

NC_010635
(Yersinia pseudotuberculosis PB1/+)

6e-11

45

13) lcrG
( YP_001604464.1 )

type III secretion protein LcrG

NC_010157
(Yersinia pestis Angola)

1e-10

44

14) G655_16655
( YP_007710171.1 )

regulator in type III secretion

NC_020912
(Pseudomonas aeruginosa B136-33)

0.010

50

15) PADK2_17175
( YP_006483416.1 )

regulator in type III secretion

NC_018080
(Pseudomonas aeruginosa DK2)

0.010

50

16) pcrG
( YP_002441207.1 )

regulator in type III secretion

NC_011770
(Pseudomonas aeruginosa LESB58)

0.010

50

17) pcrG
( YP_005975926.1 )

regulator in type III secretion

NC_017548
(Pseudomonas aeruginosa M18)

0.010

50

18) pcrG
( NP_250396.1 )

regulator in type III secretion

NC_002516
(Pseudomonas aeruginosa PAO1)

0.010

50

• Sequence Alignments

1) plu3759 in NC_005126


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score =  146 bits (539),  Expect = 6e-37, Method: Compositional matrix adjust.
 Identities = 88/92 (96%), Positives = 90/92 (98%), Gaps = 0/92 (0%)

Query  1   MQEEPNAKVLQAAEAAIKDSDHRLQLLQEMWQSLGINPNVGTELFGHTDVTLVQNAEQEL  60
           MQE PNAKVLQAAEAAIKDSDHRLQLLQEMWQSLGINP+VGTELFGH+DVTL QNAEQEL
Sbjct  1   MQEKPNAKVLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQEL  60

Query  61  LTEVNRLRSNQPPSLEEGKRLRRPPRMRGIIV  92
           LTEVNRLRSNQPPSLEEGKRLRRPPRMRGIIV
Sbjct  61  LTEVNRLRSNQPPSLEEGKRLRRPPRMRGIIV  92

2) lssG in NC_012962


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score =  117 bits (426),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 76/92 (83%), Positives = 85/92 (93%), Gaps = 0/92 (0%)

Query  1   MQEKPNAKVLQAAEEAIKDSDHRLQLLQEMWQSLGIKPSVGAELFGNSDLSLVQNAEQEL  60
           MQEKPNAKVLQAAE AIKDSDHRLQLLQEMWQSLGI+PSVG+ELFG++D++L QNAEQEL
Sbjct  1   MQEKPNAKVLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQEL  60

Query  61  LTEINRLRNSYVHSLEEGKrprrppGMRGIIV  92
           LTE+NRLR++   SLEEGKR RRPP MRGIIV
Sbjct  61  LTEVNRLRSNQPPSLEEGKRLRRPPRMRGIIV  92

3) lcrG in NC_008791


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 62.1 bits (216),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 38/86 (45%), Positives = 52/86 (61%), Gaps = 0/86 (0%)

Query  10  DKTLKQAELAIADSDHRAKLLQEMCADIGLTPEAVMKIFAGRSAEEIKPAERELLDEIKR  69
            K L+ AE AI DSDHR +LLQEM   +G+ P     +F+       + AE+ELL E++R
Sbjct  7   AKVLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNR  66

Query  70  QRERQPQHPNDGKRPRKPTMMRGQII  95
            R  QP   ++GKR R+P  MRG I+
Sbjct  67  LRSNQPPSLEEGKRLRRPPRMRGIIV  92

4) YE105_P0014 in NC_015475


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 62.1 bits (216),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 37/86 (44%), Positives = 52/86 (61%), Gaps = 0/86 (0%)

Query  10  DKTLKQAEMAIADSDHRAKLLQEMCADIGLTPEAVMKIFAGRSAEEIKPAERELLDEIKR  69
            K L+ AE AI DSDHR +LLQEM   +G+ P     +F+       + AE+ELL E++R
Sbjct  7   AKVLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNR  66

Query  70  QRERQPQHPNDGKRPKKPTMMRGQII  95
            R  QP   ++GKR ++P  MRG I+
Sbjct  67  LRSNQPPSLEEGKRLRRPPRMRGIIV  92

5) Y11_p0861 in NC_017565


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 62.1 bits (216),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 37/86 (44%), Positives = 52/86 (61%), Gaps = 0/86 (0%)

Query  10  DKTLKQAEMAIADSDHRAKLLQEMCADIGLTPEAVMKIFAGRSAEEIKPAERELLDEIKR  69
            K L+ AE AI DSDHR +LLQEM   +G+ P     +F+       + AE+ELL E++R
Sbjct  7   AKVLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNR  66

Query  70  QRERQPQHPNDGKRPKKPTMMRGQII  95
            R  QP   ++GKR ++P  MRG I+
Sbjct  67  LRSNQPPSLEEGKRLRRPPRMRGIIV  92

6) YPA_CD0079 in NC_008122


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 60.3 bits (209),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 38/86 (45%), Positives = 51/86 (60%), Gaps = 0/86 (0%)

Query  10  DKTLKQAELAIADSDHRAKLLQEMCADIGLTPEAVMKIFAGRSAEEIKPAERELLDEIKR  69
            K L+ AE AI DSDHR +LLQEM   +G+ P     +F+       + AE+ELL E++R
Sbjct  7   AKVLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNR  66

Query  70  QRERQPQHPYDGKRPRKPTMMRGQII  95
            R  QP    +GKR R+P  MRG I+
Sbjct  67  LRSNQPPSLEEGKRLRRPPRMRGIIV  92

7) lcrG in NC_017263


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 60.3 bits (209),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 38/86 (45%), Positives = 51/86 (60%), Gaps = 0/86 (0%)

Query  10  DKTLKQAELAIADSDHRAKLLQEMCADIGLTPEAVMKIFAGRSAEEIKPAERELLDEIKR  69
            K L+ AE AI DSDHR +LLQEM   +G+ P     +F+       + AE+ELL E++R
Sbjct  7   AKVLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNR  66

Query  70  QRERQPQHPYDGKRPRKPTMMRGQII  95
            R  QP    +GKR R+P  MRG I+
Sbjct  67  LRSNQPPSLEEGKRLRRPPRMRGIIV  92

8) lcrG in NC_005813


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 60.3 bits (209),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 38/86 (45%), Positives = 51/86 (60%), Gaps = 0/86 (0%)

Query  10  DKTLKQAELAIADSDHRAKLLQEMCADIGLTPEAVMKIFAGRSAEEIKPAERELLDEIKR  69
            K L+ AE AI DSDHR +LLQEM   +G+ P     +F+       + AE+ELL E++R
Sbjct  7   AKVLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNR  66

Query  70  QRERQPQHPYDGKRPRKPTMMRGQII  95
            R  QP    +GKR R+P  MRG I+
Sbjct  67  LRSNQPPSLEEGKRLRRPPRMRGIIV  92

9) lcrG in NC_003131


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 60.3 bits (209),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 38/86 (45%), Positives = 51/86 (60%), Gaps = 0/86 (0%)

Query  10  DKTLKQAELAIADSDHRAKLLQEMCADIGLTPEAVMKIFAGRSAEEIKPAERELLDEIKR  69
            K L+ AE AI DSDHR +LLQEM   +G+ P     +F+       + AE+ELL E++R
Sbjct  7   AKVLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNR  66

Query  70  QRERQPQHPYDGKRPRKPTMMRGQII  95
            R  QP    +GKR R+P  MRG I+
Sbjct  67  LRSNQPPSLEEGKRLRRPPRMRGIIV  92

10) YPDSF_3985 in NC_009377


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 60.3 bits (209),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 38/86 (45%), Positives = 51/86 (60%), Gaps = 0/86 (0%)

Query  10  DKTLKQAELAIADSDHRAKLLQEMCADIGLTPEAVMKIFAGRSAEEIKPAERELLDEIKR  69
            K L+ AE AI DSDHR +LLQEM   +G+ P     +F+       + AE+ELL E++R
Sbjct  7   AKVLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNR  66

Query  70  QRERQPQHPYDGKRPRKPTMMRGQII  95
            R  QP    +GKR R+P  MRG I+
Sbjct  67  LRSNQPPSLEEGKRLRRPPRMRGIIV  92

11) pYV0058 in NC_006153


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 60.3 bits (209),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 38/86 (45%), Positives = 51/86 (60%), Gaps = 0/86 (0%)

Query  10  DKTLKQAELAIADSDHRAKLLQEMCADIGLTPEAVMKIFAGRSAEEIKPAERELLDEIKR  69
            K L+ AE AI DSDHR +LLQEM   +G+ P     +F+       + AE+ELL E++R
Sbjct  7   AKVLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNR  66

Query  70  QRERQPQHPYDGKRPRKPTMMRGQII  95
            R  QP    +GKR R+P  MRG I+
Sbjct  67  LRSNQPPSLEEGKRLRRPPRMRGIIV  92

12) YPTS_4277 in NC_010635


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 60.3 bits (209),  Expect = 6e-11, Method: Compositional matrix adjust.
 Identities = 38/86 (45%), Positives = 51/86 (60%), Gaps = 0/86 (0%)

Query  10  DKTLKQAELAIADSDHRAKLLQEMCADIGLTPEAVMKIFAGRSAEEIKPAERELLDEIKR  69
            K L+ AE AI DSDHR +LLQEM   +G+ P     +F+       + AE+ELL E++R
Sbjct  7   AKVLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNR  66

Query  70  QRERQPQHPYDGKRPRKPTMMRGQII  95
            R  QP    +GKR R+P  MRG I+
Sbjct  67  LRSNQPPSLEEGKRLRRPPRMRGIIV  92

13) lcrG in NC_010157


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 59.5 bits (206),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 37/86 (44%), Positives = 51/86 (60%), Gaps = 0/86 (0%)

Query  10  DKTLKQAELAIADSDHRAKLLQEMCADIGLTPEAVMKIFAGRSAEEIKPAERELLDEIKR  69
            K L+ AE AI DSDHR +LLQEM   +G+ P     +F+       + AE+ELL E++R
Sbjct  7   AKVLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNR  66

Query  70  QRERQPQHPYDGKRPKKPTMMRGQII  95
            R  QP    +GKR ++P  MRG I+
Sbjct  67  LRSNQPPSLEEGKRLRRPPRMRGIIV  92

14) G655_16655 in NC_020912


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 33.0 bits (105),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 62/84 (74%), Gaps = 0/84 (0%)

Query  15  TVQAAELAIRDSEERGRLLAEMWQglglaadagellFQAPerelaraaeeellaelrrMR  74
            +QAAE AI+DS++R +LL EMWQ+LG+ +  G  LF  ++  LA+ AE+ELL+E+ R+R
Sbjct  9   VLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNRLR  68

Query  75  SSQPTQGEQGtrprrptpMRGLLI  98
           S+QP   E+G R RRP  MRG+++
Sbjct  69  SNQPPSLEEGKRLRRPPRMRGIIV  92

15) PADK2_17175 in NC_018080


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 33.0 bits (105),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 62/84 (74%), Gaps = 0/84 (0%)

Query  15  TVQAAELAIRDSEERGRLLAEMWQglglaadagellFQAPerelaraaeeellaelrrMR  74
            +QAAE AI+DS++R +LL EMWQ+LG+ +  G  LF  ++  LA+ AE+ELL+E+ R+R
Sbjct  9   VLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNRLR  68

Query  75  SSQPTQGEQGtrprrptpMRGLLI  98
           S+QP   E+G R RRP  MRG+++
Sbjct  69  SNQPPSLEEGKRLRRPPRMRGIIV  92

16) pcrG in NC_011770


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 33.0 bits (105),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 62/84 (74%), Gaps = 0/84 (0%)

Query  15  TVQAAELAIRDSEERGRLLAEMWQglglaadagellFQAPerelaraaeeellaelrrMR  74
            +QAAE AI+DS++R +LL EMWQ+LG+ +  G  LF  ++  LA+ AE+ELL+E+ R+R
Sbjct  9   VLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNRLR  68

Query  75  SSQPTQGEQGtrprrptpMRGLLI  98
           S+QP   E+G R RRP  MRG+++
Sbjct  69  SNQPPSLEEGKRLRRPPRMRGIIV  92

17) pcrG in NC_017548


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 33.0 bits (105),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 62/84 (74%), Gaps = 0/84 (0%)

Query  15  TVQAAELAIRDSEERGRLLAEMWQglglaadagellFQAPerelaraaeeellaelrrMR  74
            +QAAE AI+DS++R +LL EMWQ+LG+ +  G  LF  ++  LA+ AE+ELL+E+ R+R
Sbjct  9   VLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNRLR  68

Query  75  SSQPTQGEQGtrprrptpMRGLLI  98
           S+QP   E+G R RRP  MRG+++
Sbjct  69  SNQPPSLEEGKRLRRPPRMRGIIV  92

18) pcrG in NC_002516


> AY144116|38|G38|27550069|AAO18052.1|Photorhabdus_luminescens_W14|+|31829..32107|lssG|-|LssG
Length=92

 Score = 33.0 bits (105),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 62/84 (74%), Gaps = 0/84 (0%)

Query  15  TVQAAELAIRDSEERGRLLAEMWQglglaadagellFQAPerelaraaeeellaelrrMR  74
            +QAAE AI+DS++R +LL EMWQ+LG+ +  G  LF  ++  LA+ AE+ELL+E+ R+R
Sbjct  9   VLQAAEAAIKDSDHRLQLLQEMWQSLGINPSVGTELFGHADVTLAQNAEQELLTEVNRLR  68

Query  75  SSQPTQGEQGtrprrptpMRGLLI  98
           S+QP   E+G R RRP  MRG+++
Sbjct  69  SNQPPSLEEGKRLRRPPRMRGIIV  92