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Homologs of unnamed gene of AY597281

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpS
( YP_003883235.1 )

HrpS type III protein secretion system regulatory protein

NC_014500
(Dickeya dadantii 3937)

3e-91

2) Ser39006_2908
( YP_008523290.1 )

sigma54 specific transcriptional regulator, Fis family

NC_022268
(Serratia sp. ATCC 39006)

4e-89

3) Dd1591_1896
( YP_003004225.1 )

sigma54 specific transcriptional regulator, Fis family

NC_012912
(Dickeya zeae Ech1591)

4e-89

4) Dd586_1893
( YP_003333457.1 )

sigma54 specific transcriptional regulator, Fis family

NC_013592
(Dickeya dadantii Ech586)

2e-88

5) PCC21_022790
( YP_006646935.1 )

HrpS

NC_018525
(Pectobacterium carotovorum PCC21)

5e-85

6) hrpS
( YP_050185.1 )

sigma-54-dependent enhancer-binding protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

9e-85

7) hrpS
( YP_005818266.1 )

hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrpS protein

NC_017445
(Erwinia sp. Ejp617)

6e-84

8) PC1_2201
( YP_003017776.1 )

Fis family sigma-54 specific transcriptional regulator

NC_012917
(Pectobacterium carotovorum PC1)

6e-84

9) hrpS
( YP_001906474.1 )

Sigma-54-dependent enhancer-binding protein HrpS (hrp cluster)

NC_010694
(Erwinia tasmaniensis Et1/99)

2e-83

10) hrpS
( YP_005804080.1 )

Sigma-54-dependent enhancer-binding protein HrpS

NC_017390
(Erwinia pyrifoliae DSM 12163)

2e-83

11) hrpS
( YP_002650063.1 )

Hrp/hrc secretion/translocation pathway protein HrpS

NC_012214
(Erwinia pyrifoliae Ep1/96)

2e-83

12) HrpR
( YP_234282.1 )

type III transcriptional regulator HrpR

NC_007005
(Pseudomonas syringae B728a)

4e-83

13) hrpR
( YP_273529.1 )

type III transcriptional regulator HrpR

NC_005773
(Pseudomonas syringae 1448A)

2e-82

14) hrpS
( YP_003539957.1 )

sigma-54-dependent enhancer-binding protein

NC_013971
(Erwinia amylovora ATCC 49946)

3e-82

15) hrpS
( YP_003529897.1 )

sigma-54-dependent enhancer-binding protein HrpS

NC_013961
(Erwinia amylovora CFBP1430)

3e-82

16) hrpR
( NP_791206.1 )

type III transcriptional regulator HrpR

NC_004578
(Pseudomonas syringae DC3000)

4e-82

17) PSEBR_a5366
( YP_004356874.1 )

Fis family transcriptional regulator

NC_015379
(Pseudomonas brassicacearum NFM421)

6e-82

18) hrpS
( YP_005210952.1 )

protein HrpS

NC_016830
(Pseudomonas fluorescens F113)

3e-81

19) D781_3924
( YP_007346299.1 )

sigma-54 interacting regulator

NC_020064
(Serratia marcescens FGI94)

2e-80

20) rspS
( YP_006322245.1 )

type III secretion system transcriptional regulator RspS

NC_017911
(Pseudomonas fluorescens A506)

2e-79

21) Pmen_0033
( YP_001185540.1 )

sigma-54 dependent trancsriptional regulator

NC_009439
(Pseudomonas mendocina ymp)

5e-79

22) hrpS
( NP_791207.1 )

type III transcriptional regulator HrpS

NC_004578
(Pseudomonas syringae DC3000)

1e-76

23) Pmen_0032
( YP_001185539.1 )

sigma-54 dependent trancsriptional regulator

NC_009439
(Pseudomonas mendocina ymp)

4e-76

24) HrpS
( YP_234283.1 )

type III transcriptional regulator HrpS

NC_007005
(Pseudomonas syringae B728a)

7e-76

25) rspR
( YP_002870393.1 )

putative type III secretion system, regulatory protein

NC_012660
(Pseudomonas fluorescens SBW25)

1e-72

26) hrpS
( YP_273530.1 )

type III transcriptional regulator HrpS

NC_005773
(Pseudomonas syringae 1448A)

1e-70

27) H045_00470
( YP_007395666.1 )

type III secretion system transcriptional regulator RspS

NC_020209
(Pseudomonas poae RE*1-1-14)

5e-64

28) CYCME_2447
( YP_008375111.1 )

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

NC_021917
(Cycloclasticus zancles 7-ME)

3e-46

29) Q91_0225
( YP_006836768.1 )

sigma 54 response regulatory-like protein

NC_018697
(Cycloclasticus sp. P1; MCCC 1A01040)

1e-45

30) Desac_1380
( YP_004370417.1 )

Fis family transcriptional regulator

NC_015388
(Desulfobacca acetoxidans DSM 11109)

3e-42

31) Mlg_1309
( YP_742148.1 )

Fis family transcriptional regulator

NC_008340
(Alkalilimnicola ehrlichii MLHE-1)

6e-41

32) MCA0447
( YP_112977.1 )

sigma-54 dependent DNA-binding response regulator

NC_002977
(Methylococcus capsulatus Bath)

9e-39

33) pspF
( YP_001176896.1 )

phage shock protein operon transcriptional activator

NC_009436
(Enterobacter sp. 638)

7e-36

34) Tgr7_0676
( YP_002512755.1 )

Fis family transcriptional regulator

NC_011901
(Thioalkalivibrio sulfidophilus HL-EbGR7)

1e-35

35) Y11_08701
( YP_006004369.1 )

psp operon transcriptional activator

NC_017564
(Yersinia enterocolitica Y11)

2e-35

36) Ser39006_2989
( YP_008523371.1 )

sigma54 specific transcriptional activator, PspF, Fis family

NC_022268
(Serratia sp. ATCC 39006)

5e-35

37) pspF
( YP_003883405.1 )

DNA-binding transcriptional activator

NC_014500
(Dickeya dadantii 3937)

8e-35

38) D781_2125
( YP_007344583.1 )

psp operon transcriptional activator PspF

NC_020064
(Serratia marcescens FGI94)

4e-34

39) pspF
( YP_008230561.1 )

transcriptional regulator

NC_021741
(Serratia liquefaciens ATCC 27592)

9e-34

40) pspF
( YP_003004084.1 )

phage shock protein operon transcriptional activator

NC_012912
(Dickeya zeae Ech1591)

1e-33

41) pspF
( YP_002987340.1 )

phage shock protein operon transcriptional activator

NC_012880
(Dickeya dadantii Ech703)

1e-33

42) pspF
( YP_007406425.1 )

DNA-binding transcriptional activator

NC_020211
(Serratia marcescens WW4)

3e-33

43) pspF
( YP_008138660.1 )

psp operon transcriptional activator

NC_021591
(Serratia odorifera 4Rx13)

3e-33

44) pspF
( YP_008159502.1 )

transcriptional regulator

NC_021659
(Serratia plymuthica S13)

3e-33

45) W5S_2581
( YP_006283541.1 )

Psp operon transcriptional activator

NC_017845
(Pectobacterium sp. SCC3193)

4e-32

46) pspF
( YP_003259974.1 )

phage shock protein operon transcriptional activator

NC_013421
(Pectobacterium wasabiae WPP163)

2e-31

47) Deba_2764
( YP_003808712.1 )

Fis family transcriptional regulator

NC_014365
(Desulfarculus baarsii DSM 2075)

1e-26

• Sequence Alignments

1) hrpS in NC_014500


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  327 bits (1228),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 194/316 (62%), Positives = 255/316 (81%), Gaps = 8/316 (2%)

Query  14   HCASHESSLT--HPSEDIHGSLSSLIHTIAPLNVDIVLEGETGTGKDTLARRIHQLSGCA  71
            +CA ++ SL   H   DI G+L S+I+  APLNVD+VLEGETGTGKDTLARRIHQLSG  
Sbjct  3    ECAMNNDSLPMEHEVLDIFGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGRE  62

Query  72   GPLVAVNCAAVPETLAESELFGVVSGAYTGASRSRAGYLETADKGILFLDEIDSMPLTLQ  131
            GPLVA+NCAAVPE LAESELFGV++GAYTGAS+SRAGY+E++++G L+LDEIDSMPL LQ
Sbjct  63   GPLVAINCAAVPEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQ  122

Query  132  AKMLRVLESRGIERLGSTQFKPVDMRVIVATQTPLQKLVDEGRFRRDLYFRLDTVKIQLP  191
            AK+LRVLE RGIERLGST+F P+++RVIVATQTPL+KLV+EG+FRRDL+FRL+ +KIQLP
Sbjct  123  AKLLRVLEMRGIERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLP  182

Query  192  TLRSRTEIILPLFERFLLEASARLKRPAPGLSAIIQEQLLMHGWPGNIRELKAAAERWVL  251
            TLRSR + + +LFERF++E++ +  +P P   + + ++LL H WPGNIRELK AAER VL
Sbjct  183  TLRSRLDHLPSLFERFVVETAEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVL  242

Query  252  GLSPVPIASDGDVQVMGEDTPLTSLKVRLRRIERFLIQEALQRNDHCIDTVVNELGIPKR  311
            G++P++  +D++ +          LK  LR++E+ LIQ+ L R+   ID+V+NELGIP+R
Sbjct  243  GMPPLSSENDSQTENS------IHLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRR  296

Query  312  TLYHRIKLLNVAARGL  327
            TLYHR+K L++ +  L
Sbjct  297  TLYHRMKSLSINSPEL  312

2) Ser39006_2908 in NC_022268


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  320 bits (1202),  Expect = 4e-89, Method: Compositional matrix adjust.
 Identities = 188/293 (65%), Positives = 243/293 (83%), Gaps = 0/293 (0%)

Query  28   DIHGTLLSLINDIAPLNVDIVLEGETGTGKDTLARRIHKLSGCSGPLVAVNCAAIPESLA  87
            DI GTL S+I   APLNVD+VLEGETGTGKDTLARRIH+LSG  GPLVA+NCAA+PE LA
Sbjct  19   DIFGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLA  78

Query  88   ESELFGVVSGAYTGANRSRAGYLETADKGILFLDEIDSMPLTLQAKMLRVLENRGIERLG  147
            ESELFGV++GAYTGA++SRAGY+E++++G L+LDEIDSMPL LQAK+LRVLE RGIERLG
Sbjct  79   ESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLG  138

Query  148  STQFKAVDMRVIVATQTPLSKLVEEGRFRRDLYFRLDTVKIQLPTLRSRIDIILPMFQRF  207
            ST+F ++++RVIVATQTPL KLVEEG+FRRDL+FRL+ +KIQLPTLRSR+D + ++F+RF
Sbjct  139  STRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERF  198

Query  208  TREASARLKRSSPPIPVSVHERLLTHSWQGNIRELKAAAERWVLGLPPLPMVMETSAQHH  267
              E++ +  ++ P     V +RLL+H W GNIRELK AAER VLG+PPL+   ++ +++ 
Sbjct  199  VVETAEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENS  258

Query  268  PLLKERLRRIEKFLIQDALTRNGHCIDDVVTELGIPKRTLYHRIKLLNVRSAN  320
              LK  LR++EK LIQD L+R+   ID V+ ELGIP+RTLYHR+K L++ S++
Sbjct  259  IHLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINSPE  311

3) Dd1591_1896 in NC_012912


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  320 bits (1201),  Expect = 4e-89, Method: Compositional matrix adjust.
 Identities = 188/298 (64%), Positives = 245/298 (83%), Gaps = 4/298 (1%)

Query  28   DIHGSLASLIHTIAPLNVDIVLEGETGTGKDTLARRIHQLSGCAGPLVAVNCAAVPETLA  87
            DI G+L S+I+  APLNVD+VLEGETGTGKDTLARRIHQLSG  GPLVA+NCAAVPE LA
Sbjct  19   DIFGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLA  78

Query  88   ESELFGVVSGAYTGASRSRAGYLETADKGILFLDEIDSMPLTLQAKMLRVLESRGIERLG  147
            ESELFGV++GAYTGAS+SRAGY+E++++G L+LDEIDSMPL LQAK+LRVLE RGIERLG
Sbjct  79   ESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLG  138

Query  148  STQFKPVDMRVIVATQTPLQKLVDEGRFRRDLYFRLDTVKIQLPTLRSRTDIILPLFQRF  207
            ST+F P+++RVIVATQTPL+KLV+EG+FRRDL+FRL+ +KIQLPTLRSR D + +LF+RF
Sbjct  139  STRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERF  198

Query  208  LHDAAARLKLSVPGVSVIMQEQLLMHDWPGNIRELKAAAERWVLGLSPVPIVADGDGAES  267
            + ++A +   ++P     + ++LL H WPGNIRELK AAER VLG++P++   D++  +S
Sbjct  199  VVETAEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENS  258

Query  268  DTPLTSLKVRLRRIERFLIQEALQRNDHCIDTVVSELGIPKRTLYHRIKLLNVAARGL  325
                  LK  LR++E+ LIQ+ L R+   ID+V++ELGIP+RTLYHR+K L++ +  L
Sbjct  259  ----IHLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINSPEL  312

4) Dd586_1893 in NC_013592


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  318 bits (1194),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 187/298 (63%), Positives = 242/298 (82%), Gaps = 4/298 (1%)

Query  28   DIHGPLSSLIHTIAPLHVDIVLEGETGTGKDTLARRIHQLSGCPGPLVAVNCAAVPETLA  87
            DI G L S+I+  APL+VD+VLEGETGTGKDTLARRIHQLSG  GPLVA+NCAAVPE LA
Sbjct  19   DIFGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLA  78

Query  88   ESELFGVVSGAYTGASRSRAGYLEIADKGILFLDEIDSMPLTLQAKMLRVLESRGIERLG  147
            ESELFGV++GAYTGAS+SRAGY+E +++G L+LDEIDSMPL LQAK+LRVLE RGIERLG
Sbjct  79   ESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLG  138

Query  148  STQFKPVNMRVIVATQTPLHKLVEKGRFRRDLYFRLDTVKIQLPTLRSRTEIILPLFQRF  207
            ST+F P+N+RVIVATQTPL+KLVE G+FRRDL+FRL+ +KIQLPTLRSR + + +LF+RF
Sbjct  139  STRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERF  198

Query  208  LHDAAARLKRPVPGVSAMMQEQLLMHDWPGNIRELKAAAERWVLGLSPVPVAADGGKAGN  267
            + ++A +  +P+P   + + ++LL H WPGNIRELK AAER VLG++P++   D+    +
Sbjct  199  VVETAEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENS  258

Query  268  DTPLTSLKVRLRRIERFLIQEALQRNDHCIDNVVHELGIPKRTLYHRIKLLNVAARGL  325
                  LK  LR++E+ LIQ+ L R+   ID+V++ELGIP+RTLYHR+K L++ +  L
Sbjct  259  ----IHLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINSPEL  312

5) PCC21_022790 in NC_018525


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  307 bits (1151),  Expect = 5e-85, Method: Compositional matrix adjust.
 Identities = 181/298 (61%), Positives = 238/298 (80%), Gaps = 0/298 (0%)

Query  49   HTADDIHSSLAPIINVIAPLNVDIVLEGETGTGKDTLANRIHQLSRCSGPLVAVNCAAVP  108
            H   DI ++L ++I   APLNVD+VLEGETGTGKDTLA RIHQLS   GPLVA+NCAAVP
Sbjct  15   HEVLDIFGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVP  74

Query  109  ENLAESELFGVVSGAYTGANRSRAGYLESADKGILFLDEIDSMPMTLQAKMLRVLESRGV  168
            E+LAESELFGV++GAYTGA++SRAGY+E++++G L+LDEIDSMP+ LQAK+LRVLE RG+
Sbjct  75   EQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGI  134

Query  169  KRLGSTQFTPVDMRVIVATQTPLLQLVEKGLFRRDLYFRLDTVKIQLPTLRSRSDLILPL  228
             RLGST+F P+++RVIVATQTPL +LVE G FRRDL+FRL+ +KIQLPTLRSR D + +L
Sbjct  135  ERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSL  194

Query  229  FQRFSQEAAVRLKMTLPPMTAEIHEQLLTHSWPGNIRELKAAADRWALGLSPLAEIQPLL  288
            F+RF  E+A +    +P   +++ ++LL+H WPGNIRELK AA+R  LG++PL+  +   
Sbjct  195  FERFVVETAEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQ  254

Query  289  HPRPLQLKDRLKRIEKFLIQDALRRHDHCIDDVIVELGIPKRTLYHRLKVLNVTAREM  346
               +++LK  L+++EK LIQD L RH   ID VI ELGIP+RTLYHR+K L++ + E+
Sbjct  255  TENSIHLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINSPEL  312

6) hrpS in NC_004547


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  306 bits (1148),  Expect = 9e-85, Method: Compositional matrix adjust.
 Identities = 178/294 (61%), Positives = 237/294 (81%), Gaps = 0/294 (0%)

Query  51   DIHSSLSPIINVIAPLNVDIVLEGETGTGKDTLANRIHQISQCSGPLVAVNCAAVPENLA  110
            DI ++L ++I   APLNVD+VLEGETGTGKDTLA RIHQ+S   GPLVA+NCAAVPE+LA
Sbjct  19   DIFGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLA  78

Query  111  ESELFGVVSGAYTGANRSRAGYLESADKGILFLDEIDSMPMTLQAKMLRVLESRGVKRLG  170
            ESELFGV++GAYTGA++SRAGY+E++++G L+LDEIDSMP+ LQAK+LRVLE RG+ RLG
Sbjct  79   ESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLG  138

Query  171  STQFTPVDMRVIVATQTPLLQLVEKGLFRRDLYFRLDTVKIQLPTLRSRSDLILPLFQRF  230
            ST+F P+++RVIVATQTPL +LVE G FRRDL+FRL+ +KIQLPTLRSR D + +LF+RF
Sbjct  139  STRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERF  198

Query  231  SQEAAVRLRMTLPPMTAEIDEQLLTHSWPGNIRELKAAADRWAMGLSPLAEIQQLLHPRP  290
              E+A +    +P   +++ ++LL+H WPGNIRELK AA+R  +G++PL+  ++     +
Sbjct  199  VVETAEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENS  258

Query  291  LQLKDRLKRIEKFLIQDALRRHGHCIDDVIVELGIPKRTLYHRLKVLNVTVREM  344
            ++LK  L+++EK LIQD L RH   ID VI ELGIP+RTLYHR+K L++   E+
Sbjct  259  IHLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINSPEL  312

7) hrpS in NC_017445


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  303 bits (1136),  Expect = 6e-84, Method: Compositional matrix adjust.
 Identities = 179/298 (61%), Positives = 232/298 (78%), Gaps = 3/298 (1%)

Query  3    EEQPIDIHDTLSEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCKGKLVAVNCAAI  62
            E++ +DI +TL   I+  APL++D+VLEGETGTGKDTLAR+IHQLSG  G LVA+NCAA+
Sbjct  14   EHEVLDIFGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAV  73

Query  63   PETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRG  122
            PE LAESELFG+  GAYTGA+++RAGY+EA++NG L+LDEIDSMPL LQAK+LRVLE RG
Sbjct  74   PEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRG  133

Query  123  VERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIP  182
            +ERLG+TRF P+N+RVIVATQTPL  LVE G FRRDL+FRLN + IQL  LR+R++ + +
Sbjct  134  IERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPS  193

Query  183  LFRSFIQKAASTLQCAPREITQEH-YECLLSYSWPGNIRELKAAAERFVLGLPPLGLSCH  241
            LF  F+  +A   +  P  + + H  + LLS  WPGNIRELK AAERFVLG+PPL+   +
Sbjct  194  LFERFVVETAEK-HGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSEND  252

Query  242  CGQERP-QLKELMRRIEKNVIHDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVATS  298
               E + +LK  +R++EK +I+DCL RH  SID   +ELGIP RTLYHR+K L++ ++
Sbjct  253  SQTENSIHLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINSP  310

8) PC1_2201 in NC_012917


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  303 bits (1137),  Expect = 6e-84, Method: Compositional matrix adjust.
 Identities = 181/303 (60%), Positives = 238/303 (79%), Gaps = 0/303 (0%)

Query  40   SLPPSSTADDIHSSLSPIINVIAPLNVDIVLEGETGTGKDTLANRIHRLSRCSGPLVAVN  99
            SLP      DI ++L ++I   APLNVD+VLEGETGTGKDTLA RIH+LS   GPLVA+N
Sbjct  10   SLPMEHEVLDIFGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAIN  69

Query  100  CAAVPENLAESELFGVVSGAYTGANRSRAGYLESADKGILFLDEIDSMPMTLQAKMLRVL  159
            CAAVPE+LAESELFGV++GAYTGA++SRAGY+E++++G L+LDEIDSMP+ LQAK+LRVL
Sbjct  70   CAAVPEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVL  129

Query  160  ESRGVKRLGSTQFTPVDMRVIVATQTPLLQLVEKGLFRRDLYFRLDTVKIQLPTLRSRSD  219
            E RG+ RLGST+F P+++RVIVATQTPL +LVE G FRRDL+FRL+ +KIQLPTLRSR D
Sbjct  130  EMRGIERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLD  189

Query  220  LILPLFQRFSQEAAVRLRMTQPPMTAEIYEQLLTHSWPGNIRELKAAADRWAMGLSPLAE  279
             + +LF+RF  E+A +     P   +++ ++LL+H WPGNIRELK AA+R  +G++PL+ 
Sbjct  190  HLPSLFERFVVETAEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSS  249

Query  280  IQPLLHPRPLQLKDRLKRIEKFLIQDALRRHGHCIDDVIVELGIPKRTLYHRLKVLNVTV  339
             +      +++LK  L+++EK LIQD L RH   ID VI ELGIP+RTLYHR+K L++  
Sbjct  250  ENDSQTENSIHLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINS  309

Query  340  REM  342
             E+
Sbjct  310  PEL  312

9) hrpS in NC_010694


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  302 bits (1131),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 180/299 (61%), Positives = 233/299 (78%), Gaps = 1/299 (0%)

Query  24   EEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCSGKLVAVNCAAI  83
            E++ +DI +TL   I+  APL++D+VLEGETGTGKDTLAR+IHQLSG  G LVA+NCAA+
Sbjct  14   EHEVLDIFGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAV  73

Query  84   PETLAESELFGINNGAYTGAGQARAGYVEAAHNGILFLDEIDSMPLSLQAKMLRVLENRG  143
            PE LAESELFG+  GAYTGA+++RAGY+EA+HNG L+LDEIDSMPL LQAK+LRVLE RG
Sbjct  74   PEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRG  133

Query  144  VERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEIIIP  203
            +ERLG+TRF P+N+RVIVATQTPL  LVE G FRRDL+FRLN + IQL  LR+R++ + +
Sbjct  134  IERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPS  193

Query  204  LFRYFIQQAATTLQCPQREITQEHYECLLSYGWPGNIRELKAAAERFVLGLPPLGFSCHC  263
            LF  F+ ++A     P      +  + LLS  WPGNIRELK AAERFVLG+PPL+   + 
Sbjct  194  LFERFVVETAEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDS  253

Query  264  EDERP-RLKEMMRRIEKSLIHDCLLRHGHSIDDAAQELGIPLRTLYHRIKLLNVTTSRM  321
            + E + +LK  +R++EK+LI+DCL RH  SID   +ELGIP RTLYHR+K L++ ++ +
Sbjct  254  QTENSIHLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINSPEL  312

10) hrpS in NC_017390


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  301 bits (1129),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 178/298 (60%), Positives = 232/298 (78%), Gaps = 3/298 (1%)

Query  24   EEQPIDIHDTLSEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCKGKLVAVNCAAI  83
            E++ +DI +TL   I+  APL++D+VLEGETGTGKDTLAR+IHQLSG  G LVA+NCAA+
Sbjct  14   EHEVLDIFGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAV  73

Query  84   PETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRG  143
            PE LAESELFG+  GAYTGA+++RAGY+EA++NG L+LDEIDSMPL LQAK+LRVLE RG
Sbjct  74   PEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRG  133

Query  144  VERLGGTQFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIP  203
            +ERLG+T+F P+N+RVIVATQTPL  LVE G FRRDL+FRLN + IQL  LR+R++ + +
Sbjct  134  IERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPS  193

Query  204  LFRSFIQKAASTLQCAPREITQEH-YECLLSYSWPGNIRELKAAAERFVLGLPPLGLSCH  262
            LF  F+  +A   +  P  + + H  + LLS  WPGNIRELK AAERFVLG+PPL+   +
Sbjct  194  LFERFVVETAEK-HGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSEND  252

Query  263  CGQERP-QLKELMRRIEKNVIHDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVATS  319
               E + +LK  +R++EK +I+DCL RH  SID   +ELGIP RTLYHR+K L++ ++
Sbjct  253  SQTENSIHLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINSP  310

11) hrpS in NC_012214


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  301 bits (1129),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 178/298 (60%), Positives = 232/298 (78%), Gaps = 3/298 (1%)

Query  24   EEQPIDIHDTLSEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCKGKLVAVNCAAI  83
            E++ +DI +TL   I+  APL++D+VLEGETGTGKDTLAR+IHQLSG  G LVA+NCAA+
Sbjct  14   EHEVLDIFGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAV  73

Query  84   PETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRG  143
            PE LAESELFG+  GAYTGA+++RAGY+EA++NG L+LDEIDSMPL LQAK+LRVLE RG
Sbjct  74   PEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRG  133

Query  144  VERLGGTQFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIP  203
            +ERLG+T+F P+N+RVIVATQTPL  LVE G FRRDL+FRLN + IQL  LR+R++ + +
Sbjct  134  IERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPS  193

Query  204  LFRSFIQKAASTLQCAPREITQEH-YECLLSYSWPGNIRELKAAAERFVLGLPPLGLSCH  262
            LF  F+  +A   +  P  + + H  + LLS  WPGNIRELK AAERFVLG+PPL+   +
Sbjct  194  LFERFVVETAEK-HGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSEND  252

Query  263  CGQERP-QLKELMRRIEKNVIHDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVATS  319
               E + +LK  +R++EK +I+DCL RH  SID   +ELGIP RTLYHR+K L++ ++
Sbjct  253  SQTENSIHLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINSP  310

12) HrpR in NC_007005


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  301 bits (1126),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 165/285 (58%), Positives = 225/285 (79%), Gaps = 0/285 (0%)

Query  22   HQIVMNSVLMDMDLLLCGETGTGKDTLASRIHELSSRTGPFVGMNCAAIPESLAESQLFG  81
            + ++ ++  +++D++L GETGTGKDTLA RIH+LS+R GP+V++NCAA+PE LAES+LFG
Sbjct  25   QSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESELFG  84

Query  82   VVNGAFTGVCRAREGYIEASSGGTLYLDEIDSMPLSLQAKLLRVLESRGVERLGSTDFIP  141
            V+ GA+TG  ++R GYIEAS  GTLYLDEIDSMPL LQAKLLRVLE RG+ERLGST F+P
Sbjct  85   VMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVP  144

Query  142  LDLRVIASAQRPLDELVEQGLFRRDLFFRLNVLTLQLPALRKRREQILPLFDQFTQDVAA  201
            L+LRVI ++Q PL+ LVE+G FRRDLFFRLNV+ +QLP+LR R +++ +LF++F  + A 
Sbjct  145  LNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVETAE  204

Query  202  ESGRSVPTLDNRRVQILLSHDWPGNVRELKSAAKRFVLGLPLLGAEPVEARDPVTGLRMQ  261
              G+++P  D + ++ LLSH WPGN+RELK AA RFVLG+P L++E     +    L+  
Sbjct  205  KHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSIHLKSY  264

Query  262  MRVIEKMLIQDALKRHRHNFDAVLEELELPRRTLYHRMKELGVAS  306
            +R +EK LIQD L RH  ++D+V++EL +PRRTLYHRMK L++ S
Sbjct  265  LRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINS  309

13) hrpR in NC_005773


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  298 bits (1116),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 167/285 (59%), Positives = 224/285 (79%), Gaps = 0/285 (0%)

Query  22   HQIVMNSAFLDMDLLLCGETGTGKDTLANRIHELSSRSGPFVGMNCAAIPESLAESQLFG  81
            + ++ ++A L++D++L GETGTGKDTLA RIH+LS+R GP+V++NCAA+PE LAES+LFG
Sbjct  25   QSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESELFG  84

Query  82   VVNGAFTGVCRAREGYIEASSGGTLYLDEIDSMPLSLQAKLLRVLESRGVERLGSTEFIP  141
            V+ GA+TG  ++R GYIEAS  GTLYLDEIDSMPL LQAKLLRVLE RG+ERLGST F+P
Sbjct  85   VMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVP  144

Query  142  LDLRVIASAQRPLDELVEQGLFRRDLFFRLNVLTLHLPALRKRREQILPLFDQFTQEIAA  201
            L+LRVI ++Q PL+ LVE+G FRRDLFFRLNV+ ++LP+LR R +++ +LF++F  E A 
Sbjct  145  LNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVETAE  204

Query  202  EFQRPVPVLDNGRVQILLSHDWPGNVRELKSAAKRFVLGFPLLGAEPMDARDPVTGLRMQ  261
               +P+PV D   ++ LLSH WPGN+RELK AA RFVLG P L++E     +    L+  
Sbjct  205  KHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSIHLKSY  264

Query  262  MRVIEKMLIQDALKRHRHNVDAVLQELELPRRTLYHRMKELGVAA  306
            +R +EK LIQD L RH  ++D+V++EL +PRRTLYHRMK L++ +
Sbjct  265  LRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINS  309

14) hrpS in NC_013971


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  298 bits (1115),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 179/297 (61%), Positives = 230/297 (78%), Gaps = 3/297 (1%)

Query  24   EEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAI  83
            E++ +DI +TL   I+  APL++D+VLEGETGTGKDTLAR+IHQLSG  G LVA+NCAA+
Sbjct  14   EHEVLDIFGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAV  73

Query  84   PETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRG  143
            PE LAESELFG+  GAYTGA+++RAGY+EA++NG L+LDEIDSMPL LQAK+LRVLE RG
Sbjct  74   PEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRG  133

Query  144  VERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIP  203
            +ERLG+TRF P+N+RVIVATQTPL  LVE G FRRDL+FRLN + IQL  LR+R++ + +
Sbjct  134  IERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPS  193

Query  204  MFRSFIQKAASTLQCAPREITQEH-YECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCH  262
            +F  F+  +A   +  P  + + H  + LLS  WPGNIRELK AAERFVLG+PPL    +
Sbjct  194  LFERFVVETAEK-HGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSEND  252

Query  263  CGQERP-QLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVNT  318
               E + +LK  +R++EK +I DCL RH  SID   +ELGIP RTLYHR+K L++N+
Sbjct  253  SQTENSIHLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINS  309

15) hrpS in NC_013961


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  298 bits (1115),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 179/297 (61%), Positives = 230/297 (78%), Gaps = 3/297 (1%)

Query  24   EEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNCAAI  83
            E++ +DI +TL   I+  APL++D+VLEGETGTGKDTLAR+IHQLSG  G LVA+NCAA+
Sbjct  14   EHEVLDIFGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAV  73

Query  84   PETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRG  143
            PE LAESELFG+  GAYTGA+++RAGY+EA++NG L+LDEIDSMPL LQAK+LRVLE RG
Sbjct  74   PEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRG  133

Query  144  VERLGGTRFTPVNMRVIVATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIP  203
            +ERLG+TRF P+N+RVIVATQTPL  LVE G FRRDL+FRLN + IQL  LR+R++ + +
Sbjct  134  IERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPS  193

Query  204  MFRSFIQKAASTLQCAPREITQEH-YECLLSYSWPGNIRELKAAAERFVLGLPPLDLPCH  262
            +F  F+  +A   +  P  + + H  + LLS  WPGNIRELK AAERFVLG+PPL    +
Sbjct  194  LFERFVVETAEK-HGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSEND  252

Query  263  CGQERP-QLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVNT  318
               E + +LK  +R++EK +I DCL RH  SID   +ELGIP RTLYHR+K L++N+
Sbjct  253  SQTENSIHLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINS  309

16) hrpR in NC_004578


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  297 bits (1113),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 165/277 (60%), Positives = 220/277 (80%), Gaps = 0/277 (0%)

Query  31   LDMDLLLCGETGTGKDTLANRIHELSSRSGPFVGMNCAAIPESLAESQLFGVVNGAFTGV  90
            L++D++L GETGTGKDTLA RIH+LS+R GP+V++NCAA+PE LAES+LFGV+ GA+TG 
Sbjct  34   LNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESELFGVMAGAYTGA  93

Query  91   CRAREGYIEASSGGTLYLDEIDSMPLSLQAKLLRVLESRGIERLGSTEFIPVDLRIIASA  150
             ++R GYIEAS  GTLYLDEIDSMPL LQAKLLRVLE RGIERLGST F+P++LR+I ++
Sbjct  94   SKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVPLNLRVIVAT  153

Query  151  QRPLDELVEQGLFRRDLFFRLNVLTLHLPALRKRREQILPLFDQFTQGIAAEFGRPAPAL  210
            Q PL+ LVE+G FRRDLFFRLNV+ ++LP+LR R +++ +LF++F    A   G+P P  
Sbjct  154  QTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVETAEKHGQPIPVR  213

Query  211  DSGRVQLLLSHDWPGNIRELKSAAKRFVLGFPLLGADPVEALDPATGLRTQMRIIEKMLI  270
            D+  ++ LLSH WPGNIRELK AA RFVLG P L+++     + +  L++ +R +EK LI
Sbjct  214  DPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSIHLKSYLRQFEKALI  273

Query  271  QDALKRHRHNFDAVLQELELPRRTLYHRMKELGVAAP  307
            QD L RH  ++D+V++EL +PRRTLYHRMK L++ +P
Sbjct  274  QDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINSP  310

17) PSEBR_a5366 in NC_015379


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  297 bits (1111),  Expect = 6e-82, Method: Compositional matrix adjust.
 Identities = 163/289 (57%), Positives = 227/289 (79%), Gaps = 1/289 (0%)

Query  19   NLEAFVQSVAPLMIDVLLRGETGTGKDTLAEKIHRMSGCSGKFVAINCAAIPETLAESQL  78
             L++F++  APL +D++L GETGTGKDTLA +IH++SG  G +VAINCAA+PE LAES+L
Sbjct  23   TLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESEL  82

Query  79   FGANTGAFTGANQNRAGFVEAAHNGTLYLDEIDSMPLGLQAKLLRVLESRTVQRLGSTQS  138
            FG  +GA+TGA+++RAG++EA+HNGTLYLDEIDSMPL LQAKLLRVLE R ++RLGST+ 
Sbjct  83   FGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRF  142

Query  139  IPVNMRVIASAQCPLGEMVERGEFRRDLYFRLNIISLKLPPLRSRKERIVPLFQSLVRRE  198
            +P+N+RVI ++Q PL  +VE G FRRDL+FRLN+I ++LP LRSR +++ +LF+ +V   
Sbjct  143  VPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVET  202

Query  199  AQALDRPYVAPSPALLRQLLGYAWPGNIRELQSAAKRYVLGLPALPRAEQLEHNSSTLKL  258
            A+  ++P     P +L +LL+  WPGNIREL+ AA R+VLG+P+L+  ++  +  +++ L
Sbjct  203  AEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSEND-SQTENSIHL  261

Query  259  KEHLQQFEKILIEDCMRRHHHCIDKVIAELGIARRTLYYRMKCLQISTS  307
            K  L+QFEK LI+DC+ RH   ID VI ELGI+RRTLY RMK L I+++
Sbjct  262  KSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINSP  310

18) hrpS in NC_016830


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  294 bits (1102),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 163/289 (57%), Positives = 227/289 (79%), Gaps = 1/289 (0%)

Query  19   NLEAFVQCVAPLMIDVLLRGETGTGKDTLAEKIHRMSGCSGKFVAINCAAIPETLAESQL  78
             L++F++  APL +D++L GETGTGKDTLA +IH++SG  G +VAINCAA+PE LAES+L
Sbjct  23   TLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESEL  82

Query  79   FGANTGAFTGASQNRAGFVEAAHNGTLYLDEIDSMPLGLQAKLLRVLESRTVQRLGSTQN  138
            FG  +GA+TGAS++RAG++EA+HNGTLYLDEIDSMPL LQAKLLRVLE R ++RLGST+ 
Sbjct  83   FGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRF  142

Query  139  IPVNMRVIASAQCPLGEMVERGEFRRDLYFRLNIISLKLPPLRSRKERIVPLFQSLVRRE  198
            +P+N+RVI ++Q PL  +VE G FRRDL+FRLN+I ++LP LRSR +++ +LF+ +V   
Sbjct  143  VPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVET  202

Query  199  AQALDRPYVAPSPALLRQLIGYAWPGNIRELQSAAKRYVLGLPALPRAEQLEHNSSTLKL  258
            A+  ++P     P +L +L++  WPGNIREL+ AA R+VLG+P+L+  ++  +  +++ L
Sbjct  203  AEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSEND-SQTENSIHL  261

Query  259  KEHLQQFEKILIEDCMRRHHHCIDKVIAELGIARRTLYYRMKCLQISTS  307
            K  L+QFEK LI+DC+ RH   ID VI ELGI+RRTLY RMK L I+++
Sbjct  262  KSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINSP  310

19) D781_3924 in NC_020064


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  292 bits (1092),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 178/288 (62%), Positives = 235/288 (82%), Gaps = 1/288 (0%)

Query  39   GYLHKLTKIVAPLHVDVLLEGETGTGKDTLARRIYELSGGNGPFVPVNCGAIPESLAESE  98
            G L+ + +  APL+VD++LEGETGTGKDTLARRI +LSG +GP+V++NC+A+PE LAESE
Sbjct  22   GTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESE  81

Query  99   LFGVEAGAYTGASHARAGYLETANNGILFLDEIDSMPLTVQAKLLRVLETRTITRLGSTK  158
            LFGV AGAYTGAS +RAGY+E+++NG L+LDEIDSMPL +QAKLLRVLE R I RLGST+
Sbjct  82   LFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTR  141

Query  159  PISLHLRVIVAAQTPLEQLVEAGRFRRDLCFRLNTIKLETPTLRSRPELIIPLFRRFAIE  218
             ++L+LRVIVA+QTPLE+LVE G+FRRDL FRLN IK++ PTLRSR + + +LF RF +E
Sbjct  142  FVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVE  201

Query  219  SALRLGMPHPPRSTALDEALLLHCWPGNLRELKAAAERFILGLPPL-NQALPQESGAVLL  277
            +A + G P P R   + + LL H WPGN+RELK AAERF+LG+PPL ++  +Q   ++ L
Sbjct  202  TAEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSIHL  261

Query  278  KERLKRIERSLIHDCLhrhdhriddvvhELGIPRRTLYHRLKQLNIHA  325
            K  L+++E++LI+DCL RH   ID V++ELGIPRRTLYHR+K L+I++
Sbjct  262  KSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINS  309

20) rspS in NC_017911


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  288 bits (1079),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 162/285 (57%), Positives = 228/285 (80%), Gaps = 0/285 (0%)

Query  21   IETTLNNTAALNVDILLLGETGTGKDTLAQRIHRLSGRRGNFVAVNCAAIPESLAESQLF  80
            +++ + ++A+LNVD++L GETGTGKDTLA+RIH+LSGR G +VA+NCAA+PE LAES+LF
Sbjct  24   LQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESELF  83

Query  81   GVNSGAYTGAVQSRAGFVEAAHLGTLYLDEIDSMPLSLQAKLLRVLECRGVERLGSTRFI  140
            GV +GAYTGA +SRAG++EA+H GTLYLDEIDSMPL LQAKLLRVLE RG+ERLGSTRF+
Sbjct  84   GVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFV  143

Query  141  SVDMRVIASAQQSLQIMVDQGAFRRDLYFRLNVVNIELPALRDRRERIIPLFLQMIQEEA  200
            ++++RVI ++Q +L+ +V++G FRRDL+FRLNV++I+LP+LR R +++ +LF + + E A
Sbjct  144  PLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVETA  203

Query  201  DQFNCTPPSPSDGLLHELLCHPWLGNVRELRSAAKRFVLGLPPLSAPACRQPPPQTDLKA  260
            ++     P     +L+ LL H W GN+REL+ AA RFVLG+PPLS+    Q     +LK+
Sbjct  204  EKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSIHLKS  263

Query  261  RLQQIEKALIEESMYRHQHCVDTVAIELGVAKRTLYYRMKQLNIS  305
             L+Q+EKALI++ + RH   +D+V  ELG+++RTLY RMK L+I+
Sbjct  264  YLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSIN  308

21) Pmen_0033 in NC_009439


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  287 bits (1073),  Expect = 5e-79, Method: Compositional matrix adjust.
 Identities = 162/282 (58%), Positives = 222/282 (79%), Gaps = 5/282 (1%)

Query  28   AGHFRMDLLLCGETGTGKDVLARHIHDLSGRTGAFVGINCAAIPEALAESQLFGVASGAF  87
            A+ + +D++L GETGTGKD LAR+IH+LSGR G++V+INCAA+PE LAES+LFGV +GA+
Sbjct  31   AAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESELFGVMAGAY  90

Query  88   TGANRSRQGYIEASNDGTLYLDEIDSMPLQLQAKLLRVLETRGVERLGTTKFIPLNLRII  147
            TGA++SR GYIEAS++GTLYLDEIDSMPL LQAKLLRVLE RG+ERLG+T+F+PLNLR+I
Sbjct  91   TGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVPLNLRVI  150

Query  148  ASTQRPLEELVEQGLFRRDLLFRLNAMTLSLPPLRQRRELILPLFKRFTRSLGAKQANGA  207
             +TQ PLE LVE+G FRRDL+FRLN + + LP LR R + + +LF RF    + K+++  
Sbjct  151  VATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVETAEKHGQPI  210

Query  208  QALDSQLIQLLLSHPWPGNIRELKSAAKRYVIGLPPIDAGVLADLEDGDFPHDRGLKKRM  267
               D+++++ LLSH WPGNIRELK AA R+V+G+PP+ +      +D++  +   LK  +
Sbjct  211  PVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSE-----NDSQTENSIHLKSYL  265

Query  268  RAVEKMLIQDALKRHKNGLEAVAEELGISRRTLYQRIKELDV  309
            R  EK LIQD L RH +++++V +ELGI+RRTLY+R+K L +
Sbjct  266  RQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSI  307

22) hrpS in NC_004578


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  279 bits (1043),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 163/276 (60%), Positives = 217/276 (79%), Gaps = 0/276 (0%)

Query  27   SQLGIDVLLSGETGTGKDTIARRIHEMSGRKGRLVAMNCAAIPESLAESELFGVVSGAYT  86
            + L +D++L GETGTGKDT+ARRIH++SGR G LVA+NCAA+PE LAESELFGV++GAYT
Sbjct  32   APLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESELFGVMAGAYT  91

Query  87   GADRSRVGYVEAAQGGTLYLDEIDSMPLSLQAKLLRVLETRALERLGSTSTIKLDICVIA  146
            GA +SR GY+EA++ GTLYLDEIDSMPL LQAKLLRVLE R++ERLGST  + L++ VI 
Sbjct  92   GASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVPLNLRVIV  151

Query  147  SAQCSLDDAVERGQFRRDLYFRLNVLTLKLPPLRNQSDRIVPLFTRFTAAAARELGVPVP  206
            ++Q +L+  VE G+FRRDL+FRLNV+ ++LP LR++ D++ +LF RF   +A   G P+P
Sbjct  152  ATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVETAEKHGQPIP  211

Query  207  DVCPLLHKVLLGHDWPGNIRELKAAAKRHVLGFPLLGAEPQGEEHLACGLKSQLRVIEKA  266
               P + + LL+H WPGNIRELK AA R VLG P L++E +++ + +  LKS LR +EKA
Sbjct  212  VRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSIHLKSYLRQFEKA  271

Query  267  LIQESLKRHDNCVDSVSLELDVPRRTLYRRIKELQI  302
            LIQ+ L RH + +DSV  EL++PRRTLY+R+K L I
Sbjct  272  LIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSI  307

23) Pmen_0032 in NC_009439


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  277 bits (1036),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 161/285 (57%), Positives = 218/285 (77%), Gaps = 2/285 (0%)

Query  19   NLEVVASSISELNIDVLLTGETGSGKDTLAQYLHKLSGRKGPFVAMNCAAIPESLFESEL  78
             L+      + LN+D++L GETG+GKDTLA+ +H+LSGR GP+VA+NCAA+PE L ESEL
Sbjct  23   TLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESEL  82

Query  79   FGVTSGAYTGADHSRMGYVEAAQGGTLYLDEIDSMPAFLQAKLLRVLETRQIERLGSTTP  138
            FGV +GAYTGA  SR GY+EA++ GTLYLDEIDSMP +LQAKLLRVLE R IERLGST  
Sbjct  83   FGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRF  142

Query  139  VPLDICVVASAQRSLDALVEQGEFRRDLYFRLNVLTLRLPALRQKREWIIPMFERFAFEA  198
            VPL++ V+ ++Q +L+ LVE+G FRRDL+FRLNV+ ++LP+LR + + + ++FERF  E+
Sbjct  143  VPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVET  202

Query  199  SQDMDTALPVIDPAIEHVLLNHDWPGNLRELKSAAKRHVLGINLLGIEAEQPIE--CDLK  256
            ++  + ++PV DP + + LL+H WPGN+RELK AA R VLG+  L+ E +   E   +LK
Sbjct  203  AEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSIHLK  262

Query  257  CQLRLIEKVLIQESLQRHEHCIEAVLHELDIPRRTLYHRMKELDV  301
              LR +EK LIQ+ L RH   I++V++EL+IPRRTLYHRMK L +
Sbjct  263  SYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSI  307

24) HrpS in NC_007005


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  276 bits (1033),  Expect = 7e-76, Method: Compositional matrix adjust.
 Identities = 162/276 (59%), Positives = 219/276 (80%), Gaps = 0/276 (0%)

Query  27   SQLGIDVLLSGETGTGKDTIARRIHNMSGRQGRFVPMNCAAIPESLAESELFGVVSGAYT  86
            + L +D++L GETGTGKDT+ARRIH++SGR+G +V++NCAA+PE LAESELFGV++GAYT
Sbjct  32   APLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESELFGVMAGAYT  91

Query  87   GADRSRMGYIEAAQGGTLYLDEIDSMPLALQAKLLRVLETRALERLGSTSTINLDICVIA  146
            GA +SR GYIEA++ GTLYLDEIDSMPL LQAKLLRVLE R++ERLGST  + L++ VI 
Sbjct  92   GASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVPLNLRVIV  151

Query  147  SAQACLDDAVEEGKFRRDLYFRLNVLTLKLPPLRDQPERILPLFTRFVAASAKELSVPIP  206
            ++Q+ L+  VEEGKFRRDL+FRLNV+ ++LP LR + +++ +LF RFV  +A   + PIP
Sbjct  152  ATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVETAEKHGQPIP  211

Query  207  DVCPLLQQVLTGHHWPGNIRELKAAAKRHVLGFPLLGADSQTEEHLACGLKFQLRAIEKA  266
               P + + L +H+WPGNIRELK AA R VLG P L+++++++ + +  LK  LR +EKA
Sbjct  212  VRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSIHLKSYLRQFEKA  271

Query  267  LIQQALKRHRNCIDAASLELDIPRRTLYRRIKELSI  302
            LIQ+ L RH + ID+   EL+IPRRTLY+R+K LSI
Sbjct  272  LIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSI  307

25) rspR in NC_012660


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  265 bits (992),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 157/285 (56%), Positives = 220/285 (78%), Gaps = 0/285 (0%)

Query  21   IEEILSGTAQLNIDILLLGETGTGKDTLAQRIHRLSGRRGSFIAVNCAAIPETLAESQLF  80
            ++ ++  +A LN+D++L GETGTGKDTLA+RIH+LSGR G+++A+NCAA+PE LAES+LF
Sbjct  24   LQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESELF  83

Query  81   GVNSGAYTGAVQSRAGFIEAAHLGTLYLDEIDSMPLSLQAKLLRTLESRGVERLGSTRFI  140
            GV +GAYTGA +SRAG+IEA+H GTLYLDEIDSMPL LQAKLLR LE RG+ERLGSTRF+
Sbjct  84   GVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFV  143

Query  141  PVDMRVIASAQQSLYEMVERGTFRRDLYFRLSVVNIQLPSLRECRDRIIPLFLTMIRQEA  200
            P+++RVI ++Q +L  +VE G FRRDL+FRL+V++IQLP+LR   D++ +LF   + + A
Sbjct  144  PLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVETA  203

Query  201  ESFKCPYpqppssllqqllCHPWPGNVRELSSTAKRFVLGLPPLSVRGKNPKISEASLKE  260
            E    P P   + +L++LL H WPGN+REL  +A RFVLG+PPLS    +   +   LK 
Sbjct  204  EKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSIHLKS  263

Query  261  RLQRIEKSLIEESLHRHNGNVDLAAADLRVAKRTFYYRMKQLGID  305
             L+++EK+LI++ L RH  ++D    +L +++RT+Y RMK L+I+
Sbjct  264  YLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSIN  308

26) hrpS in NC_005773


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  259 bits (968),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 160/276 (58%), Positives = 215/276 (78%), Gaps = 0/276 (0%)

Query  27   SQLGIDVLLSGETGTGKDTIAQRIHTISGRKGRLVAMNCAAIPESLAESELFGVVSGAYT  86
            + L +D++L GETGTGKDT+A+RIH +SGR G LVA+NCAA+PE LAESELFGV++GAYT
Sbjct  32   APLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESELFGVMAGAYT  91

Query  87   GADRSRVGYIEAAQGGTLYLDEIDSMPLSLQAKLLRVLETRALERLGSTSTIKLDVCVIA  146
            GA +SR GYIEA++ GTLYLDEIDSMPL LQAKLLRVLE R++ERLGST  + L++ VI 
Sbjct  92   GASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVPLNLRVIV  151

Query  147  SAQSSLDDAVEQGKFRRDLYFRLNVltlqlpplrtqpERILPLFKRFMAAAAKELNVASA  206
            ++Q++L+  VE+GKFRRDL+FRLNV+ +QLP LR++ +++ +LF RF+  +A     + +
Sbjct  152  ATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVETAEKHGQPIP  211

Query  207  DVCPLLQQVLLGHEWPGNIRELKAAAKRHVLGFPVLGVDPQSEEHLACGLKSQLRAIEKA  266
               P + + LL+H WPGNIRELK AA R VLG P L+ + +S+ + +  LKS LR +EKA
Sbjct  212  VRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSIHLKSYLRQFEKA  271

Query  267  LIQQSLKRHRNCIDAASLELDMPRRTLYRRIKELQI  302
            LIQ+ L RH + ID+   EL++PRRTLY+R+K L I
Sbjct  272  LIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSI  307

27) H045_00470 in NC_020209


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  236 bits (881),  Expect = 5e-64, Method: Compositional matrix adjust.
 Identities = 137/240 (58%), Positives = 191/240 (80%), Gaps = 0/240 (0%)

Query  1    MNCAAIPESLAESQLFGVNSGAFTGAMQSRAGFVEAAHLGTLYLDEIDSMPLSLQAKLLR  60
            +NCAA+PE LAES+LFGV +GA+TGA +SRAG++EA+H GTLYLDEIDSMPL LQAKLLR
Sbjct  68   INCAAVPEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLR  127

Query  61   VLESRGVERLGSTRFIPVDMRVIASAQHSLHAMVEQGTFRRDLFFRLNVVTIQLPALRDQ  120
            VLE RG+ERLGSTRF+P+++RVI ++Q +L+ +VE+G FRRDLFFRLNV+ IQLP+LR +
Sbjct  128  VLEMRGIERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSR  187

Query  121  RERIVPLFLQMVRQEAELFECPAPTPTAELLQQLLCQSWLGNIRELRSTAKRFVlglppl  180
             +++ +LF + V + AE    P P   +++L++LL + W GNIREL+ +A RFVLG+PPL
Sbjct  188  LDHLPSLFERFVVETAEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPL  247

Query  181  spplsKPQGNEMSLKARLQEIEKALIEESMQRNDRCVDRVAIEMGIAKRTLYHRMKQLAI  240
            S+       N + LK+ L+++EKALI++ + R+ + +D V  E+GI++RTLYHRMK L+I
Sbjct  248  SSENDSQTENSIHLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSI  307

28) dctD in NC_011983


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  200 bits (742),  Expect = 8e-53, Method: Compositional matrix adjust.
 Identities = 119/293 (41%), Positives = 193/293 (66%), Gaps = 4/293 (1%)

Query  13   LRHTLRQIADTDVDVLVTGETGSGKEVVASLLHRWSRRAKGNFVALNCGALPETVIESEL  72
            L+  +R+ A  +VD+++ GETG+GK+ +A  +H+ S R  G +VA+NC+A+PE + ESEL
Sbjct  24   LQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGRE-GPLVAINCAAVPEQLAESEL  82

Query  73   FGHEPGAFTGAQKKRIGRIEHASAGTLFLDEIESMPPAVQVQLLRVLEMREVTPLGTNEV  132
            FG  +GA+TGA K R G IE +  GTL+LDEI+SMP  +Q +LLRVLEMR +  LG+   
Sbjct  83   FGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRF  142

Query  133  RPVDLRVVAAAKVDLGDPRQRGDFREDLYYRLNVVTISIPPLRDRRDDIPLLFGYFAERA  192
             P++LRV+ A++  L    + G FR DL++RLNV+ I +P LR R D++P LF  F   +
Sbjct  143  VPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVET  202

Query  193  ASRFKRDVPTMSTAIRRHLQHHDWPGNVRELSHFAERFVLGLESAAGSKPGETPSTDTVL  252
            A +  + +P     +  +L  H WPGN+REL   AERFVLG+ + ++ + ++   T+  +
Sbjct  203  AEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQ---TENSI  259

Query  253  PLPARVERYEADLIRETLAQNGGDVRRTIEALGIPRKTFYDKLQRHGIVRSEF  305
             L + + ++E  LI++ L+++   +   I+ LGIPR+T+Y++++  +I  +E+
Sbjct  260  HLKSYLRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKSLSINSPEL  312

29) CYCME_2447 in NC_021917


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  178 bits (658),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 111/277 (41%), Positives = 178/277 (65%), Gaps = 1/277 (0%)

Query  33   IDRVATKNTPILLDGETGTGKSLLARKIHDLSQRKGPFVSINCATFSQHLLETELFGHAK  92
            I + A  N  ++L+GETGTGK  LAR+IH+LS R GP+V+INCA+ +++L E+ELFG   
Sbjct  28   IRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESELFGVMA  87

Query  93   GAFTGAKDARKGLVATAQNGTLFLDEIGELPLDSQPKLLHLLEEKTIRPVGSDKEYDTSV  152
            GA+TGA  +R G + +++NGTL+LDEI+ +PL  Q+KLL++LE + I  +GS +    ++
Sbjct  88   GAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVPLNL  147

Query  153  RIVAATNKRLKDLVKQGLFRADLYYRLSVVPFTAPPLRDRPDDIEALTSTFVCQLCEEHE  212
            R++ AT+  L  LV +G FR DL++RL+V+ +  P LR R D++ +L   FV +  E H 
Sbjct  148  RVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVETAEKHG  207

Query  213  LTSPHISTESINALQAYDWPGNIRELRNHIERSLLLSIPLHETLPAADTNSATTNKHCLK  272
               P    + +N L +  WPGNIREL+   ER ++L++P   +   ++T+++   K  L+
Sbjct  208  QPIPVRDPHVLNRLLSHRWPGNIRELKCAAER-FVLGMPPLSSENDSQTENSIHLKSYLR  266

Query  273  SLEKEHILKAINESKGNKSQAAKSLGISRRTLDRKLK  309
             +EK  I   ++    +     + LGI+RRTL +++K
Sbjct  267  QFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMK  303

30) Q91_0225 in NC_018697


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  176 bits (652),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 111/277 (41%), Positives = 178/277 (65%), Gaps = 1/277 (0%)

Query  33   IDRVATKNTPILLDGETGTGKSLLARKIHDLSQRKGPFVSINCATFSQHLLETELFGHAK  92
            I + A  N  ++L+GETGTGK  LAR+IH+LS R GP+V+INCA+ +++L E+ELFG   
Sbjct  28   IRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREGPLVAINCAAVPEQLAESELFGVMA  87

Query  93   GAFTGAKDARKGLVATAQNGTLFLDEIGELPLDSQPKLLHLLEEKTIRPVGSDKEYDTSV  152
            GA+TGA  +R G + +++NGTL+LDEI+ +PL  Q+KLL++LE + I  +GS +    ++
Sbjct  88   GAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVPLNL  147

Query  153  RIVAATNKRLKDLVKQGLFRADLYYRLSVVPFTAPPLRDRPDDIEALTSTFVCQLCEEHE  212
            R++ AT+  L  LV +G FR DL++RL+V+ +  P LR R D++ +L   FV +  E H 
Sbjct  148  RVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVETAEKHG  207

Query  213  LTSPHISTESINALQAYDWPGNIRELRNHIERSLLLSIPLHETLPVADTDSATTNKYCLK  272
               P    + +N L +  WPGNIREL+   ER ++L++P   +   ++T+++   K  L+
Sbjct  208  QPIPVRDPHVLNRLLSHRWPGNIRELKCAAER-FVLGMPPLSSENDSQTENSIHLKSYLR  266

Query  273  SLEKEHILKVINESKGNKSQAAKSLGISRRTLDRKLK  309
             +EK  I   ++    +     + LGI+RRTL +++K
Sbjct  267  QFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMK  303

31) Desac_1380 in NC_015388


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  165 bits (609),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 105/228 (47%), Positives = 156/228 (69%), Gaps = 11/228 (4%)

Query  25   AAPTDATVLILGETGTGKELIARAIHHTSPRRDDPFVVVNCAAIPETLLESDLFGHERGA  84
            AAP +  +++ GETGTGK+ +AR IH+ S R ++P+V +NCAA+PE L ES+LFG   GA
Sbjct  31   AAPLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPLVAINCAAVPEQLAESELFGVMAGA  89

Query  85   FTGALSRKIGRFAMAHGGTIFLDEIGELPLPIQAKILRVLQFKEVEPLGSNRIQKVDVRI  144
            +TGA   + G +  +H GT++LDEI+ +PL +QAK+LRVL+ + +E LGS R+  +++R+
Sbjct  90   YTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVPLNLRV  149

Query  145  IAATHRNLSDDVREGRFREDLYYRLNIVVLTLPPLRQRLEDIPLLAYHFFDHFV----QK  200
            I AT+  L   V EG+FR DL++RLN++ + LP LR RL+++P L    F++FV    +K
Sbjct  150  IVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSL----FERFVVETAEK  205

Query  201  NNRSIHDIDPKVLQLLRRYPWPGNIRELENVIERAVIFCTGPTLTTEN  248
            + ++I   DP VL+ L    WPGNIREL    ER V+    P L++EN
Sbjct  206  HGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVL--GMPPLSSEN  251

32) Mlg_1309 in NC_008340


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  161 bits (593),  Expect = 6e-41, Method: Compositional matrix adjust.
 Identities = 123/304 (41%), Positives = 188/304 (62%), Gaps = 19/304 (6%)

Query  11   LQSVLRAARLVASTEVTTLILGESGTGKELLARTVHAESPRANGPFVAVNCAALPEGLAE  70
            LQS +R A   A+ +V  ++ GE+GTGK+ LAR +H  S R +GP+VA+NCAA+PE LAE
Sbjct  24   LQSFIRKA---APLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPLVAINCAAVPEQLAE  79

Query  71   SELFGHRRGAFTGAVDPHDGRIAAAANGTLFLDEVGELPAAVQAKLLRFLESGECQPLGA  130
            SELFG   GA+TGA  ++ G I A+ NGTL+LDE++ +P  +QAKLLR LE    + LG+
Sbjct  80   SELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGS  139

Query  131  TRPQSVNTRVVAATHRDLYQDVEAGRFRADLYYRLQVIPLELPALRERPADIPVLLDHFL  190
            TR  ++N RV+ AT+  L + VE G+FR DL++RL+VI ++LP+LR R  ++P L+++F+
Sbjct  140  TRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFV  199

Query  191  QALARHHDLPAPRLQPDALRCLQRYPWPGNVRELRNTCERLVVLHAGRTLTAGalppeiq  250
               A  H+ P P  +P+ L  L    WPGN+REL+ + ER+V       L   +L++E +
Sbjct  200  VETAEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFV-------LGMPPLSSEND  252

Query  251  qapaaapraNGFRLPAGGIQMDELEADLIRQALERTGGNRSQAARLLGLTRDTLLYRMKK  310
                 + + +++        + ++E  LI++ L R   +       LG+ R TL  RMK 
Sbjct  253  SQTENSIHLKSY--------LRQFEKALIQDCLSRHPKSIDSVINELGIPRRTLYHRMKS  304

Query  311  YDLT  314
              + 
Sbjct  305  LSIN  308

33) MCA0447 in NC_002977


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  153 bits (564),  Expect = 9e-39, Method: Compositional matrix adjust.
 Identities = 97/241 (41%), Positives = 165/241 (69%), Gaps = 1/241 (0%)

Query  12   FEALIRSARLVAATDVTVLIVGETGTGKELLARALQGHSLRADRPFVTLNCAALPASVAE  71
            F +L    R  A+ +V +++ GETGTGK+ LAR ++  S R + P+V++NCAA+P  +AE
Sbjct  21   FGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGREG-PLVAINCAAVPEQLAE  79

Query  72   SELFGHRRGAFTGAVSDFPGRLETADGGTLFLDEINSLPLPVQAKLLRFLDSGEIQPVGA  131
            SELFG   GA+TGA    +G +E+++ GTL+LDEI+S+PL +QAKLLR L+   I+ +G+
Sbjct  80   SELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGS  139

Query  132  RAPQRVDVRIIAATNANLADKIDKGEFRRDLYYRLSVVPLEIPPLRERGGDVELLLHHFM  191
                 +++R+I AT++ L   ++ G FRRDL++RL+V+ +++P LR R +++  L+++F+
Sbjct  140  TRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFV  199

Query  192  RHFAQTHAIPPAVFGRGAVRRLIAYPWPGNIRELRNLCERLAILMPGRVIEEQDLPEEAL  251
             + A+ H+ P +V +   + RL++  WPGNIREL+   ER+ + MP    E++   E+++
Sbjct  200  VETAEKHGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSI  259

Query  252  R  252
            +
Sbjct  260  H  260

34) pspF in NC_009436


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  144 bits (529),  Expect = 7e-36, Method: Compositional matrix adjust.
 Identities = 100/235 (43%), Positives = 159/235 (68%), Gaps = 2/235 (0%)

Query  22   VSRLAPLNKPVLIIGERGTGKELIANRLHFLSGRWDGPFISLNCAALNENLLDSELFGHE  81
            + + APLN  +++ GE GTGK+ +A R+H LSGR +GP++++NCAA+ E+L +SELFG  
Sbjct  28   IRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPLVAINCAAVPEQLAESELFGVM  86

Query  82   AGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVN  141
            AGA+TGA K ++G +E ++ GTL+LDE+ + P+L+Q KLLRV+E   +ER+G+++ + +N
Sbjct  87   AGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVPLN  146

Query  142  VRLVCATNANLPEMVAEEKFRADLLDRLAFDVVQLPPLRERSGDIMLLAEQFAIQMCREL  201
            +R++ AT++ L  +V E KFR DL+ RL    +QLP LR R +++  L E+F ++     
Sbjct  147  LRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVETAEKH  206

Query  202  GLPLFAGFSDYARETLLSYAWPGNIRELKNVVERSVYRHASSETELDTIIIDPFH  256
            G P+ +       + LLS  WPGNIRELK   ER V   ++  +E D+   +++H
Sbjct  207  GQPI-PVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSIH  260

35) Tgr7_0676 in NC_011901


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  143 bits (526),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 103/253 (41%), Positives = 165/253 (66%), Gaps = 16/253 (6%)

Query  39   GETGTGKELLARLIHHESRRAHGSWVAVNCAALPQDLIEAELFGYRRGAFTGAVADRPGY  98
            GETGTGK+ LAR IH+ S R +G+ VA+NCAA+P++L E+ELFG   GA+TGA   R+GY
Sbjct  42   GETGTGKDTLARRIHQLSGR-EGPLVAINCAAVPEQLAESELFGVMAGAYTGASKSRAGY  100

Query  99   IRQAQGGTLFLDEVAELPLGAQAKLLRFLEHGECQALGGDRPEPVDVRVLAATHRDLRHW  158
            I  ++ GTL+LDE+  +PL  QAKLLR LE    + LG+ R  P+++RV+ AT+  L   
Sbjct  101  IEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVPLNLRVIVATQTPLEKL  160

Query  159  VDAGRFREDLYYRLHVIplelpplrerpGDIGVLLDALTEQLAARHGVNPPRFSAQA-RR  217
            V+ G+FR DL++RL+VI ++LP LR R +++  L++ +  + A +HG   P   ++   R
Sbjct  161  VEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVETAEKHGQPIPVRDPHVLNR  220

Query  218  LLTRHRWPGNVRELRNLCERSVVLFSGQTIDPEHLHLEARADTAADLPDWQLPRDGVQLD  277
            LL+ HRWPGN+REL+  C     +++   + +E+   +++++ + +L           L 
Sbjct  221  LLS-HRWPGNIRELK--CAAERFVLGMPPLSSEN---DSQTENSIHLKSY--------LR  266

Query  278  RLEAGLIRQALGR  290
            ++E +LI++ L+R
Sbjct  267  QFEKALIQDCLSR  279

36) Y11_08701 in NC_017564


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  142 bits (523),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 99/238 (42%), Positives = 159/238 (67%), Gaps = 7/238 (2%)

Query  26   AKLNKPVLVIGERGTGKELIAHRLHYLSNRWQGPFISLNCAALNENLLDSELFGHEAGAF  85
            A LN  +++ GE GTGK+ +A+R+H LS R +GP++++NCAA+ E+L +SELFG  AGA+
Sbjct  32   APLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPLVAINCAAVPEQLAESELFGVMAGAY  90

Query  86   TGAQKRHLGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGHLERVGGSQPLQVDVRLV  145
            TGA K + G +E ++ GTL+LDE+ + P+L+Q KLLRV+E   +ER+G+++ + +++R++
Sbjct  91   TGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVPLNLRVI  150

Query  146  CATNDNLPVLAATGKFRADLLDRLAFDVVQLPPLRERQQDIMLLAEHFAIQMCRELGLPL  205
             AT+  L  L   GKFR DL+ RL    +QLP LR R +++  L E+F ++     G P+
Sbjct  151  VATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVETAEKHGQPI  210

Query  206  FPGFTPQAEQQLLEYRWPGNVRELKNVVERSV-----YRHSDNSEALDNIIIDPFARQ  258
             P   P+  ++LL  RWPGN+RELK   ER V         ++S++ ++I + ++ RQ
Sbjct  211  -PVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSIHLKSYLRQ  267

37) Ser39006_2989 in NC_022268


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  141 bits (518),  Expect = 5e-35, Method: Compositional matrix adjust.
 Identities = 100/235 (43%), Positives = 155/235 (66%), Gaps = 8/235 (3%)

Query  1    MDHEKESLLGEANNFLEMLEQVSQLAQLNKPVLVIGERGTGKELIASRLHYLSPRWQGPF  60
            M+HE   ++G  ++F      + + A LN  +++ GE GTGK+ +A R+H LS R +GP+
Sbjct  13   MEHEVLDIFGTLQSF------IRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPL  65

Query  61   ISLNCAALNENLLDSELFGHEAGAFTGAQKRHLGRFERADGGTLFLDELATAPMLVQEKL  120
            +++NCAA+ E+L +SELFG  AGA+TGA K + G +E ++ GTL+LDE+ + P+L+Q KL
Sbjct  66   VAINCAAVPEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKL  125

Query  121  LRVIEYGVLERVGGGQPLQVDVRLVCATNDNLPVLAEQGKFRADLLDRLAFDVVYLPPLR  180
            LRV+E   +ER+G+ + + +++R++ AT+  L  L E+GKFR DL+ RL    + LP LR
Sbjct  126  LRVLEMRGIERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLR  185

Query  181  QRQQDIMLLAQHFAVQMCRELGQSLFPGFTPHAEHTLLHYAWPGNIRELKNVVER  235
             R +++  L ++F V+     GQ++ P   PH  + LL   WPGNIRELK   ER
Sbjct  186  SRLDHLPSLFERFVVETAEKHGQPI-PVRDPHVLNRLLSHRWPGNIRELKCAAER  239

38) pspF in NC_014500


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  140 bits (515),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 99/235 (43%), Positives = 152/235 (65%), Gaps = 8/235 (3%)

Query  1    MAHEQESLLGEANSFLEVLEQVSQLAQLNKPVLVIGERGTGKELIASRLHYLSPRWQGPF  60
            M HE   ++G  +SF      + + A LN  +++ GE GTGK+ +A R+H LS R +GP+
Sbjct  13   MEHEVLDIFGTLQSF------IRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPL  65

Query  61   ISLNCAALNENLLDSELFGHEAGAFTGAQKRHLGRFERADGGTLFLDELATAPMLVQEKL  120
            +++NCAA+ E+L +SELFG  AGA+TGA K + G +E ++ GTL+LDE+ + P+L+Q KL
Sbjct  66   VAINCAAVPEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKL  125

Query  121  LRVIEYGVLERVGGGQSLQVDVRLVCATNEDLPTLAAQGKFRADLLDRLAFDVVHLPPLR  180
            LRV+E   +ER+G+ + + +++R++ AT+  L  L  +GKFR DL+ RL    ++LP LR
Sbjct  126  LRVLEMRGIERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLR  185

Query  181  QRQQDIMLLAQHFAVQMCRELGLPLFPGFSPQAERTLLDYAWPGNIRELKNVVER  235
             R +++  L ++F V+     G P+ P   P+    LL   WPGNIRELK   ER
Sbjct  186  SRLDHLPSLFERFVVETAEKHGQPI-PVRDPHVLNRLLSHRWPGNIRELKCAAER  239

39) D781_2125 in NC_020064


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  138 bits (506),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 96/237 (41%), Positives = 157/237 (67%), Gaps = 8/237 (3%)

Query  1    MSEQIEPLLGEANAFVEVLEQVSQLATLNKPVLVIGERGTGKELIAHRLHYLSNRWQGPF  60
            M +++  ++G  ++F+       + A LN  +++ GE GTGK+ +A+R+H LS R +GP+
Sbjct  13   MEHEVLDIFGTLQSFI------RKAAPLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPL  65

Query  61   ISLNCAALNENLLDSELFGHEAGAFTGAQKRHLGRFERADGGTLFLDELATAPMLVQEKL  120
            +++NCAA+ E+L +SELFG  AGA+TGA K + G +E ++ GTL+LDE+ + P+L+Q KL
Sbjct  66   VAINCAAVPEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKL  125

Query  121  LRVIEYGHLERVGGSQPLQVDVRLVCATNDDLPALAAAGKFRADLLDRLAFDVVQLPPLR  180
            LRV+E   +ER+G+++ + +++R++ AT+  L  L   GKFR DL+ RL    +QLP LR
Sbjct  126  LRVLEMRGIERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLR  185

Query  181  RRQQDIMLLAEHFAIQMCRELALPLFPGFTAHARETLLGYGWPGNVRELKNVVERSV  237
             R +++  L E+F ++     + P+ P   +H  + LL+  WPGN+RELK   ER V
Sbjct  186  SRLDHLPSLFERFVVETAEKHGQPI-PVRDPHVLNRLLSHRWPGNIRELKCAAERFV  241

40) pspF in NC_021741


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  137 bits (502),  Expect = 9e-34, Method: Compositional matrix adjust.
 Identities = 95/237 (41%), Positives = 158/237 (67%), Gaps = 8/237 (3%)

Query  1    MSEQLENLLGEANAFVEVLEQVSQLAKLNKPVLVIGERGTGKELIAHRLHYLSNRWQGPF  60
            M +++ +++G  ++F+       + A LN  +++ GE GTGK+ +A+R+H LS R +GP+
Sbjct  13   MEHEVLDIFGTLQSFI------RKAAPLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPL  65

Query  61   ISLNCAALNENLLDSELFGHEAGAFTGAQKRHLGRFERADGGTLFLDELATAPMLVQEKL  120
            +++NCAA+ E+L +SELFG  AGA+TGA K + G +E ++ GTL+LDE+ + P+L+Q KL
Sbjct  66   VAINCAAVPEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKL  125

Query  121  LRVIEYGHLERVGGSQPLQVDVRLVCATNDDLPALAAAGKFRADLLDRLAFDVVQLPPLR  180
            LRV+E   +ER+G+++ + +++R++ AT+  L  L   GKFR DL+ RL    +QLP LR
Sbjct  126  LRVLEMRGIERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLR  185

Query  181  RRQQDIMLLAEHFAIQMCRELSLPLFPGFTERARDTLLGYHWPGNVRELKNVVERSV  237
             R +++  L E+F ++     + P+ P    +  + LL+ +WPGN+RELK   ER V
Sbjct  186  SRLDHLPSLFERFVVETAEKHGQPI-PVRDPHVLNRLLSHRWPGNIRELKCAAERFV  241

41) pspF in NC_012912


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  136 bits (500),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 97/235 (42%), Positives = 152/235 (65%), Gaps = 8/235 (3%)

Query  1    MAHEKESLLGEANSFLEVLEQVSQLAQLSKPVLVIGERGTGKELIASRLHYLSPRWQGPF  60
            M HE   ++G  +SF      + + A L+  +++ GE GTGK+ +A R+H LS R +GP+
Sbjct  13   MEHEVLDIFGTLQSF------IRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPL  65

Query  61   ISLNCAALNENLLDSELFGHEAGAFTGAQKRHLGRFERADGGTLFLDELATAPMLVQEKL  120
            +++NCAA+ E+L +SELFG  AGA+TGA K + G +E ++ GTL+LDE+ + P+L+Q KL
Sbjct  66   VAINCAAVPEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKL  125

Query  121  LRVIEYGVLERVGGGQSLQVDVRLVCATNEDLPALAAQGKFRADLLDRLAFDVVHLPPLR  180
            LRV+E   +ER+G+ + + +++R++ AT+  L  L  +GKFR DL+ RL    ++LP LR
Sbjct  126  LRVLEMRGIERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLR  185

Query  181  LRQQDIMLLAQHFAVQMCRELGLPLFSGFSPQAERTLLDYGWPGNIRELKNVVER  235
             R +++  L ++F V+     G P+ +   P+    LL   WPGNIRELK   ER
Sbjct  186  SRLDHLPSLFERFVVETAEKHGQPI-PVRDPHVLNRLLSHRWPGNIRELKCAAER  239

42) pspF in NC_012880


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  136 bits (501),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 96/235 (41%), Positives = 155/235 (66%), Gaps = 8/235 (3%)

Query  1    MTHDNESLLGEANRFLEVLEQVSQLAPLNKPVLVIGERGTGKELIASRLHYLSARWQGAF  60
            M H+   ++G  + F      + + APLN  +++ GE GTGK+ +A R+H LS+R +G++
Sbjct  13   MEHEVLDIFGTLQSF------IRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPL  65

Query  61   ISLNCAALNENLLDSELFGHEAGAFTGAQRRHLGRFERADGGTLFLDELATAPMLVQEKL  120
            +++NCAA+ E+L +SELFG  AGA+TGA + + G +E ++ GTL+LDE+ + P+L+Q KL
Sbjct  66   VAINCAAVPEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKL  125

Query  121  LRVIEYGVLERVGGSQPLQVDVRLVCATNEDLPALAAAGKFRADLLDRLAFDVVHLPPLR  180
            LRV+E   +ER+G+++ + +++R++ AT+  L  L   GKFR DL+ RL    ++LP LR
Sbjct  126  LRVLEMRGIERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLR  185

Query  181  ARQQDIMLLAQHFAVQMCRELRLPLFPGFTPNAEHILLSYPWPGNIRELKNVVER  235
            +R +++  L ++F V+       P+ P   P+  + LLS  WPGNIRELK   ER
Sbjct  186  SRLDHLPSLFERFVVETAEKHGQPI-PVRDPHVLNRLLSHRWPGNIRELKCAAER  239

43) pspF in NC_020211


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  135 bits (495),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 96/237 (41%), Positives = 155/237 (66%), Gaps = 8/237 (3%)

Query  1    MNEQPENLLGEANAFVEVLEQVSQVAKLNKPVLVIGERGTGKELIAHRLHYLSNRWQGPF  60
            M+++  +++G  ++F+       + A LN  +++ GE GTGK+ +A+R+H LS R +GP+
Sbjct  13   MEHEVLDIFGTLQSFI------RKAAPLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPL  65

Query  61   ISLNCAALNENLLDSELFGHEAGAFTGAQKRHLGRFERADGGTLFLDELATAPMLVQEKL  120
            +++NCAA+ E+L +SELFG  AGA+TGA K + G +E ++ GTL+LDE+ + P+L+Q KL
Sbjct  66   VAINCAAVPEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKL  125

Query  121  LRVIEYGQLERVGGSQPLRVDVRLVCATNDDLPTLAAAGKFRADLLDRLAFDVVQLPPLR  180
            LRV+E   +ER+G+++ + +++R++ AT+  L  L   GKFR DL+ RL    +QLP LR
Sbjct  126  LRVLEMRGIERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLR  185

Query  181  QRRPDIMLLAEHFAIQMCRELGLPLFPGFTERARQTLLEYGWPGNVRELKNVVERSV  237
             R  ++  L E+F ++     G P+ P    +  + LL   WPGN+RELK   ER V
Sbjct  186  SRLDHLPSLFERFVVETAEKHGQPI-PVRDPHVLNRLLSHRWPGNIRELKCAAERFV  241

44) pspF in NC_021591


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  135 bits (495),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 95/237 (41%), Positives = 157/237 (67%), Gaps = 8/237 (3%)

Query  1    MSEQLENLLGEANAFVEVLEQVSQLAKLNKPVLVIGERGTGKELIAHRLHYLSNRWQGPF  60
            M +++ +++G  ++F+       + A LN  +++ GE GTGK+ +A+R+H LS R +GP+
Sbjct  13   MEHEVLDIFGTLQSFI------RKAAPLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPL  65

Query  61   ISLNCAALNENLLDSELFGHEAGAFTGAQKRHLGRFERADGGTLFLDELATAPMLVQEKL  120
            +++NCAA+ E+L +SELFG  AGA+TGA K + G +E ++ GTL+LDE+ + P+L+Q KL
Sbjct  66   VAINCAAVPEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKL  125

Query  121  LRVIEYGHLERVGGSQPLQVDVRLVCATNDDLPALAAAGKFRADLLDRLAFDVVQLPPLR  180
            LRV+E   +ER+G+++ + +++R++ AT+  L  L   GKFR DL+ RL    +QLP LR
Sbjct  126  LRVLEMRGIERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLR  185

Query  181  QRQQDIMLLAEHFAIQMCRELSLQLFPGFTERARDTLLAYSWPGNVRELKNVVERSV  237
             R +++  L E+F ++     + Q +P    +  + LL+  WPGN+RELK   ER V
Sbjct  186  SRLDHLPSLFERFVVETAEKHG-QPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFV  241

45) pspF in NC_021659


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 95/237 (41%), Positives = 157/237 (67%), Gaps = 8/237 (3%)

Query  1    MSEQLENLLGEANAFVEVLEQVSQLAKLNKPVLVIGERGTGKELIAHRLHYLSNRWQGPF  60
            M +++ +++G  ++F+       + A LN  +++ GE GTGK+ +A+R+H LS R +GP+
Sbjct  13   MEHEVLDIFGTLQSFI------RKAAPLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPL  65

Query  61   ISLNCAALNENLLDSELFGHEAGAFTGAQKRHLGRFERADGGTLFLDELATAPMLVQEKL  120
            +++NCAA+ E+L +SELFG  AGA+TGA K + G +E ++ GTL+LDE+ + P+L+Q KL
Sbjct  66   VAINCAAVPEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKL  125

Query  121  LRVIEYGHLERVGGSQPLQVDVRLVCATNDDLPALAAAGKFRADLLDRLAFDVVQLPPLR  180
            LRV+E   +ER+G+++ + +++R++ AT+  L  L   GKFR DL+ RL    +QLP LR
Sbjct  126  LRVLEMRGIERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLR  185

Query  181  QRQQDIMLLAEHFAIQMCRELSLQLFPGFTERARDTLLAYSWPGNVRELKNVVERSV  237
             R +++  L E+F ++     + Q +P    +  + LL+  WPGN+RELK   ER V
Sbjct  186  SRLDHLPSLFERFVVETAEKHG-QPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFV  241

46) W5S_2581 in NC_017845


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  131 bits (480),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 98/241 (41%), Positives = 152/241 (64%), Gaps = 7/241 (2%)

Query  22   VSQLAQLNKPVLVIGERGTGKELIASRLHYLSPRWQGPFVSLNCAALNENLLDSELFGHE  81
            + + A LN  +++ GE GTGK+ +A R+H LS R +GP+V++NCAA+ E+L +SELFG  
Sbjct  28   IRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPLVAINCAAVPEQLAESELFGVM  86

Query  82   AGAFTGAQKRHLGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGMLERVGGRDQLQVD  141
            AGA+TGA K + G +E ++ GTL+LDE+ + P+L+Q KLLRV+E   +ER+G+   + ++
Sbjct  87   AGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVPLN  146

Query  142  VRLVCATNDDLPALAASGKFRADLLDRLAFDVVQLPPLRERQQDIMLLADNFAIQMCREL  201
            +R++ AT+  L  L   GKFR DL+ RL    +QLP LR R +++  L + F ++   E 
Sbjct  147  LRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVET-AEK  205

Query  202  HLPLFPGFTATARETLLNYDWPGNIRELKNVVERSV-----YRHGDSEQPLDTIILNPFH  256
            H   +P   +   + LL+  WPGNIRELK   ER V         +  Q  ++I L+++ 
Sbjct  206  HGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSIHLKSYL  265

Query  257  R  257
            R
Sbjct  266  R  266

47) pspF in NC_013421


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  129 bits (473),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 98/241 (41%), Positives = 152/241 (64%), Gaps = 7/241 (2%)

Query  22   VSQLAQLNKPVLVIGERGTGKELIASRLHYLSPRWQGPFVSLNCAALNENLLDSELFGHE  81
            + + A LN  +++ GE GTGK+ +A R+H LS R +GP+V++NCAA+ E+L +SELFG  
Sbjct  28   IRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPLVAINCAAVPEQLAESELFGVM  86

Query  82   AGAFTGAQKRHLGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGMLERVGGRDQLQVD  141
            AGA+TGA K + G +E ++ GTL+LDE+ + P+L+Q KLLRV+E   +ER+G+   + ++
Sbjct  87   AGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKLLRVLEMRGIERLGSTRFVPLN  146

Query  142  VRLVCATNDDLPALAACGKFRADLLDRLAFDVVQLPPLRERQQDIMLLADNFAIQMCREL  201
            +R++ AT+  L  L   GKFR DL+ RL    +QLP LR R +++  L + F ++   E 
Sbjct  147  LRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLRSRLDHLPSLFERFVVET-AEK  205

Query  202  HLPLFPGFTATARETLLNYDWPGNIRELKNVVERSV-----YRHGDSEQPLDTIILNPFH  256
            H   +P   +   + LL+  WPGNIRELK   ER V         +  Q  ++I L+++ 
Sbjct  206  HGQPIPVRDPHVLNRLLSHRWPGNIRELKCAAERFVLGMPPLSSENDSQTENSIHLKSYL  265

Query  257  R  257
            R
Sbjct  266  R  266

48) Deba_2764 in NC_014365


> AY597281|37|G37|51103140|AAT96283.1|Pseudomonas_viridiflava_ME3.1b|-|35013..35951|-|-|HrpS/HrpR-like 
protein
Length=312

 Score =  113 bits (412),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 97/235 (42%), Positives = 155/235 (66%), Gaps = 2/235 (0%)

Query  6    QNDKVPEAIGQSEAFVAFQEALSRVAPVERPVLLLGERGTGKELAAARLHYLSGRWQGPM  65
            +ND +P      + F ++Q  + + AP++  ++L GE GTGK+  A R+H LSGR +GP+
Sbjct  7    NNDSLPMEHEVLDIFGTLQSFIRKAAPLNVDMVLEGETGTGKDTLARRIHQLSGR-EGPL  65

Query  66   ITLNCAAMAPTLIEAELFGHeagaftgatrrragrfeaaDGGTLFLDEIGAMPLEAQEKL  125
            +++NCAA++  L E+ELFG  AGA+TGA++ RAG +EA++ GTL+LDEI++MPL  Q KL
Sbjct  66   VAINCAAVPEQLAESELFGVMAGAYTGASKSRAGYIEASHNGTLYLDEIDSMPLLLQAKL  125

Query  126  LRVVEYGLFERVGGSEPIAADVRIVGATNADLPGLVRAGRFKADLLDRLSFEALVLPPLR  185
            LRV+E   +ER+G++  ++ ++R++ AT++ L  LV  G+F+ DL+ RL+   + LP LR
Sbjct  126  LRVLEMRGIERLGSTRFVPLNLRVIVATQTPLEKLVEEGKFRRDLFFRLNVIKIQLPTLR  185

Query  186  QRRGDVMLLANHFAARMAFELGRHEIAQFSDSAAAALEAHPWPGNVRQLKNVVER  240
             R +++  L ++F    A   G + I+         L +H WPGN+R+LK   ER
Sbjct  186  SRLDHLPSLFERFVVETAEKHG-QPIPVRDPHVLNRLLSHRWPGNIRELKCAAER  239