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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpE gene of AY597277

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) HrpE
( YP_234289.1 )

type III secretion protein HrpE

NC_007005
(Pseudomonas syringae B728a)

1e-54

2) hrpE
( NP_791213.1 )

type III secretion protein HrpE

NC_004578
(Pseudomonas syringae DC3000)

2e-49

3) hrpE
( YP_273536.1 )

type III secretion component protein HrpE

NC_005773
(Pseudomonas syringae 1448A)

2e-45

4) Pmen_0026
( YP_001185533.1 )

HrpE/YscL family type III secretion apparatus protein

NC_009439
(Pseudomonas mendocina ymp)

3e-22

• Sequence Alignments

1) HrpE in NC_007005


> AY597277|37|G37|51103008|AAT96155.1|Pseudomonas_viridiflava_LP23.1a|-|32511..33092|hrpE|-|HrpE
Length=193

 Score =  205 bits (762),  Expect = 1e-54, Method: Compositional matrix adjust.
 Identities = 132/193 (69%), Positives = 169/193 (88%), Gaps = 0/193 (0%)

Query  1    MLAKRSITLTADAVLPEPVLRREYIANSLLARDILTDAQRQAEQMLVLEQAKADRRHQEA  60
            MLAKRSI+LT+ A+LPEP++RRE IA+SLLA+DIL++AQ Q  +M+  +QA++DR +Q A
Sbjct  1    MLAKRSIALTTAALLPEPIVRRETIAESLLAQDILAEAQVQVREMITRQQAQSDRLQQRA  60

Query  61   LAQFWERANAFLDELHVQREALQQQAMTAVEELLTEALSQLLDETTLAERARALVRNLAA  120
            LA+FW  AN FL +L  QREALQQQAM +VE+LL+++L +LLD+T+LAERARAL RNLAA
Sbjct  61   LAEFWVSANVFLADLKRQREALQQQAMETVEQLLSDSLKHLLDQTSLAERARALARNLAA  120

Query  121  SQLNEAVATLSVHPEMAEPVAEWLAESRFAEHWALKRDATLATESLRLSDANGAFEIDWA  180
            SQLN+AVATLSVHP++A+ VAEWLA SRFA+HW LKRDA++A ESLRLSDANGAF+I+W+
Sbjct  121  SQLNDAVATLSVHPDIADTVAEWLAASRFAQHWQLKRDAAIAVESLRLSDANGAFDIEWT  180

Query  181  TLRNGLAGAEPAA  193
            TLRNGLAG  ++A
Sbjct  181  TLRNGLAGEGSPA  193

2) hrpE in NC_004578


> AY597277|37|G37|51103008|AAT96155.1|Pseudomonas_viridiflava_LP23.1a|-|32511..33092|hrpE|-|HrpE
Length=193

 Score =  188 bits (697),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 135/193 (70%), Positives = 175/193 (91%), Gaps = 0/193 (0%)

Query  1    MLAKRSIALTAATLLREPILRREDIADSLLARDILADARQQATQILALEQEKAEHLQQQA  60
            MLAKRSIALT+A+LL EPI+RRE IA+SLLA+DILA+A+ Q  ++++ +Q ++++LQQ+A
Sbjct  1    MLAKRSIALTTAALLPEPIVRRETIAESLLAQDILAEAQVQVREMITRQQAQSDRLQQRA  60

Query  61   LAQFWENANAFLGELQVQREALQEQAMTAVeellseslRHLLDDTTlaeraralarnlaa  120
            LA+FW +AN FL++L+ QREALQ+QAM +VE+LLS+SL+HLLD+T+LAERARALARNLAA
Sbjct  61   LAEFWVSANVFLADLKRQREALQQQAMETVEQLLSDSLKHLLDQTSLAERARALARNLAA  120

Query  121  SQLNEAVATLSVHPQIADAVAEWLADSRFSEHWQLKRDATIASDSLRLSDANGAFDIAWA  180
            SQLN+AVATLSVHP+IAD+VAEWLA SRF++HWQLKRDA+IA +SLRLSDANGAFDI W+
Sbjct  121  SQLNDAVATLSVHPDIADTVAEWLAASRFAQHWQLKRDAAIAVESLRLSDANGAFDIEWT  180

Query  181  DLRKGLLGVEPAA  193
             LR+GL G  ++A
Sbjct  181  TLRNGLAGEGSPA  193

3) hrpE in NC_005773


> AY597277|37|G37|51103008|AAT96155.1|Pseudomonas_viridiflava_LP23.1a|-|32511..33092|hrpE|-|HrpE
Length=193

 Score =  175 bits (646),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 135/193 (70%), Positives = 172/193 (90%), Gaps = 0/193 (0%)

Query  1    MLAKRSITLTATALLPEPVLRREDIANSLLARDVLADAQRQAEQMLVLEQQKADLVHQQA  60
            MLAKRSI+LT++ALLPEP++RRE IA+SLLA+D+LA+AQ Q  +M+  +Q ++D ++Q+A
Sbjct  1    MLAKRSIALTTAALLPEPIVRRETIAESLLAQDILAEAQVQVREMITRQQAQSDRLQQRA  60

Query  61   LASFWENANAFLaelqvqrevlqqqaMAAVeellseslRHLLDDTTLAERARALVKNLAA  120
            LA FW +AN FLA+L+ QRE LQQQAM +VE+LLS+SL+HLLD+T+LAERARAL +NLAA
Sbjct  61   LAEFWVSANVFLADLKRQREALQQQAMETVEQLLSDSLKHLLDQTSLAERARALARNLAA  120

Query  121  SQLNEAVATLSVHPDMAEPVAEWLADSRFAQYWQLKRDASLTTERLRLSDANGAFDIDWA  180
            SQLN+AVATLSVHPD+A+ VAEWLA SRFAQ WQLKRDA+++ E LRLSDANGAFDI+W+
Sbjct  121  SQLNDAVATLSVHPDIADTVAEWLAASRFAQHWQLKRDAAIAVESLRLSDANGAFDIEWT  180

Query  181  TLRNGLAGRDSSA  193
            TLRNGLAG +S+A
Sbjct  181  TLRNGLAGEGSPA  193

4) Pmen_0026 in NC_009439


> AY597277|37|G37|51103008|AAT96155.1|Pseudomonas_viridiflava_LP23.1a|-|32511..33092|hrpE|-|HrpE
Length=193

 Score = 98.1 bits (353),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 76/186 (41%), Positives = 131/186 (71%), Gaps = 1/186 (0%)

Query  1    MLTKRRFTLGSA-VLEEPILRRQLLAESlradellaqarlqaeqllqqaheqrqHYLDEA  59
            ML+KR ++L +A +L EPI+RR+ +AESL A+++LA+A++Q  +++ + + Q ++  + A
Sbjct  1    MLAKRSIALTTAALLPEPIVRRETIAESLLAQDILAEAQVQVREMITRQQAQSDRLQQRA  60

Query  60   VARFWSEANALLQAIQEERASYQRDALSAVDSLLNIALSRLLDETDLPQRISALLRNLVV  119
            +A FW  AN +L  ++ +R + Q++A+ +V+ LL+ +L +LLD+T L++R  AL RNL  
Sbjct  61   LAEFWVSANVFLADLKRQREALQQQAMETVEQLLSDSLKHLLDQTSLAERARALARNLAA  120

Query  120  GLPSKAEANLACHPEAASTVRAWLQTMGFDALWQVQEDPGMAPESLRLSNTLGTFHIDWP  179
            +  + A A L+ HP+ A TV  WL +  F   WQ++ D+++A ESLRLS++ G+F+I+W 
Sbjct  121  SQLNDAVATLSVHPDIADTVAEWLAASRFAQHWQLKRDAAIAVESLRLSDANGAFDIEWT  180

Query  180  SLRRGL  185
            +LR GL
Sbjct  181  TLRNGL  186