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Homologs of cap1O gene of U10927

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SAMSHR1132_01360
( YP_005324658.1 )

capsular polysaccharide synthesis enzyme

NC_016941
(Staphylococcus aureus MSHR1132)

2e-51

2) capN
( YP_005740912.1 )

Capsular polysaccharide synthesis enzyme Cap8N

NC_017340
(Staphylococcus aureus 04-02981)

1e-47

3) ECTR2_119
( YP_005748872.1 )

NAD dependent epimerase/dehydratase family protein

NC_017343
(Staphylococcus aureus ECT-R 2)

1e-47

4) cap5N
( YP_003281083.1 )

capsular polysaccharide biosynthesis protein Cap5N

NC_013450
(Staphylococcus aureus ED98)

1e-47

5) SaurJH1_0153
( YP_001315302.1 )

NAD-dependent epimerase/dehydratase

NC_009632
(Staphylococcus aureus JH1)

1e-47

6) SaurJH9_0148
( YP_001245531.1 )

NAD-dependent epimerase/dehydratase

NC_009487
(Staphylococcus aureus JH9)

1e-47

7) capN
( YP_005754146.1 )

capsular polysaccharide synthesis enzyme

NC_017349
(Staphylococcus aureus LGA251)

1e-47

8) capN
( YP_001440751.1 )

capsular polysaccharide synthesis enzyme Cap5N

NC_009782
(Staphylococcus aureus Mu3)

1e-47

9) capN
( NP_370686.1 )

capsular polysaccharide synthesis enzyme Cap5N

NC_002758
(Staphylococcus aureus Mu50)

1e-47

10) capN
( NP_373399.1 )

capsular polysaccharide synthesis protein Cap5N

NC_002745
(Staphylococcus aureus N315)

1e-47

11) capN
( YP_007582727.1 )

Capsular polysaccharide synthesis enzyme Cap5N

NC_020536
(Staphylococcus aureus ST228)

1e-47

12) capN
( YP_007620441.1 )

Capsular polysaccharide synthesis enzyme Cap5N

NC_020566
(Staphylococcus aureus ST228)

1e-47

13) capN
( YP_007622428.1 )

Capsular polysaccharide synthesis enzyme Cap5N

NC_020568
(Staphylococcus aureus ST228)

1e-47

14) capN
( YP_007576740.1 )

Capsular polysaccharide synthesis enzyme Cap5N

NC_020529
(Staphylococcus aureus ST228 (isolate=10388))

1e-47

15) capN
( YP_007618455.1 )

Capsular polysaccharide synthesis enzyme Cap5N

NC_020564
(Staphylococcus aureus ST228 (isolate=10497))

1e-47

16) capN
( YP_007578748.1 )

Capsular polysaccharide synthesis enzyme Cap5N

NC_020532
(Staphylococcus aureus ST228 (isolate=15532))

1e-47

17) capN
( YP_007580712.1 )

Capsular polysaccharide synthesis enzyme Cap5N

NC_020533
(Staphylococcus aureus ST228 (isolate=16035))

1e-47

18) capN
( YP_007584691.1 )

Capsular polysaccharide synthesis enzyme Cap5N

NC_020537
(Staphylococcus aureus ST228 (isolate=18412))

1e-47

19) capN
( YP_006708913.1 )

capsular polysaccharide synthesis enzyme

NC_018608
(Staphylococcus aureus 08BA02176)

2e-47

20) capN
( YP_008484183.1 )

capsular polysaccharide synthesis UDP-glucose 4-epimerase CapN, putative

NC_022222
(Staphylococcus aureus 6850)

2e-47

21) ST398NM01_0176
( YP_006194323.1 )

UDP-N-acetyl-D-quinovosamine 4-epimerase

NC_017673
(Staphylococcus aureus 71193)

2e-47

22) M013TW_0152
( YP_005296620.1 )

capsular polysaccharide synthesis enzyme Cap8N

NC_016928
(Staphylococcus aureus M013)

2e-47

23) capN
( YP_008586776.1 )

capsular polysaccharide synthesis enzyme

NC_022443
(Staphylococcus aureus SA40)

2e-47

24) capN
( YP_008584242.1 )

capsular polysaccharide synthesis enzyme

NC_022442
(Staphylococcus aureus SA957)

2e-47

25) SAPIG0176
( YP_005732986.1 )

capsular polysaccharide synthesis enzyme

NC_017333
(Staphylococcus aureus ST398)

2e-47

26) SAAG_00645
( YP_008448158.1 )

NAD dependent epimerase/dehydratase

NC_022113
(Staphylococcus aureus 55/2053)

2e-47

27) galE
( YP_008167325.1 )

UDP-glucose 4-epimerase

NC_021670
(Staphylococcus aureus Bmb9393)

2e-47

28) cap5N
( YP_005743534.1 )

capsular polysaccharide biosynthesis protein Cap5N

NC_017341
(Staphylococcus aureus JKD6008)

2e-47

29) capN
( YP_039629.1 )

capsular polysaccharide synthesis enzyme

NC_002952
(Staphylococcus aureus MRSA252)

2e-47

30) sodA
( YP_005751439.1 )

Capsular polysaccharide synthesis enzyme

NC_017347
(Staphylococcus aureus T0131)

2e-47

31) capN
( YP_005730195.1 )

capsular polysaccharide synthesis enzyme

NC_017331
(Staphylococcus aureus TW20)

2e-47

32) MS7_0156
( YP_005756621.1 )

polysaccharide biosynthesis family protein

NC_017351
(Staphylococcus aureus 11819-97)

3e-47

33) CA347_174
( YP_008127057.1 )

polysaccharide biosynthesis family protein

NC_021554
(Staphylococcus aureus CA-347)

3e-47

34) SAKOR_00142
( YP_008490326.1 )

UDP-N-acetyl-D-quinovosamine 4-epimerase

NC_022226
(Staphylococcus aureus CN1)

3e-47

35) BN843_1680
( YP_007867247.1 )

UDP-glucose 4-epimerase

NC_021059
(Staphylococcus aureus M1)

3e-47

36) cap5N
( YP_185049.1 )

capsular polysaccharide biosynthesis protein Cap5N

NC_002951
(Staphylococcus aureus COL)

4e-47

37) cap5N
( YP_492879.1 )

capsular polysaccharide biosynthesis protein Cap5N

NC_007793
(Staphylococcus aureus FPR3757)

4e-47

38) SAS0137
( YP_042259.1 )

capsular polysaccharide synthesis enzyme

NC_002953
(Staphylococcus aureus MSSA476)

4e-47

39) SAOUHSC_00127
( YP_498727.1 )

cap5N protein/UDP-glucose 4-epimerase

NC_007795
(Staphylococcus aureus NCTC 8325)

4e-47

40) capN
( YP_001331143.1 )

capsular polysaccharide biosynthesis protein CapN

NC_009641
(Staphylococcus aureus Newman)

4e-47

41) cap5N
( YP_001574087.1 )

capsular polysaccharide biosynthesis protein Cap5N

NC_010079
(Staphylococcus aureus TCH1516)

4e-47

42) SAVC_00580
( YP_005289717.1 )

capsular polysaccharide biosynthesis protein Cap5N

NC_016912
(Staphylococcus aureus VC40)

4e-47

43) capN
( YP_415616.1 )

capsular polysaccharide synthesis enzyme CapN

NC_007622
(Staphylococcus aureus RF122)

5e-47

44) SLGD_00336
( YP_003470611.1 )

capsular polysaccharide synthesis enzyme Cap8N

NC_013893
(Staphylococcus lugdunensis HKU09-01)

6e-47

45) capN
( YP_005759457.1 )

capsular polysaccharide synthesis enzyme

NC_017353
(Staphylococcus lugdunensis N920143)

6e-47

46) SAOV_0109
( YP_005735627.1 )

capsular polysaccharide biosynthesis protein CapN

NC_017337
(Staphylococcus aureus ED133)

1e-46

47) cap5N
( YP_005746418.1 )

capsular polysaccharide biosynthesis protein Cap5N

NC_017342
(Staphylococcus aureus TCH60)

1e-46

48) cap8N
( NP_644952.1 )

capsular polysaccharide synthesis enzyme Cap8N

NC_003923
(Staphylococcus aureus MW2)

9e-47

49) capN
( YP_006236502.1 )

capsular polysaccharide synthesis enzyme

NC_017763
(Staphylococcus aureus HO 5096 0412)

3e-46

50) cap5N
( YP_005738312.1 )

capsular polysaccharide biosynthesis protein Cap5N

NC_017338
(Staphylococcus aureus JKD6159)

6e-46

51) TEH_03950
( YP_004885886.1 )

putative UDP-sugar epimerase

NC_016052
(Tetragenococcus halophilus NBRC 12172)

2e-39

52) HMPREF9243_0862
( YP_004321160.1 )

NAD dependent epimerase/dehydratase family protein

NC_015278
(Aerococcus urinae ACS-120-V-Col10a)

2e-37

• Sequence Alignments

1) SAMSHR1132_01360 in NC_016941


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  195 bits (725),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 111/264 (43%), Positives = 190/264 (72%), Gaps = 2/264 (0%)

Query  3    KNILITGMHGYIGNALKNKLTEQGHRVNQINVRNQLWKSTSFKDYDVLIHTAALVHNSTP  62
            KNILITG +G++GN ++  L ++  +V++++++N+ WK  SF +YDV+IH AALVHN+ P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   EARLSDYMQVNMLLTKQLAQKAKDEGIKQFIFMSTMAVYGKEGNVGRTDEISTQTPIKPT  122
            +A++ DYM+ N  LT++LA+KAKD+G+ QFIF STM+++G +G + +  EI+  TP KP 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKMFAEQALLEMVSNTFKVSIVRPPMIYGPNCPGNFQRLMKLSQLLPIIPDIKNQ  182
            + Y+ SK++AE+ +  ++ + F V+IVRPPMIYG + PGNF +L+K+++L  I+P   N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSAVMHEIRHQAHRKT--IMVTMPSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR++  + +  I + +P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNRYFNKLSIFRKLFGNLTYSKTL  264
            +N+ ++K +I  K++GNLTYSK +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

2) capN in NC_017340


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

3) ECTR2_119 in NC_017343


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

4) cap5N in NC_013450


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

5) SaurJH1_0153 in NC_009632


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

6) SaurJH9_0148 in NC_009487


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

7) capN in NC_017349


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKGYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF  YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

8) capN in NC_009782


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

9) capN in NC_002758


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

10) capN in NC_002745


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

11) capN in NC_020529


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

12) capN in NC_020564


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

13) capN in NC_020532


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

14) capN in NC_020533


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

15) capN in NC_020537


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

16) capN in NC_020566


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

17) capN in NC_020536


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

18) capN in NC_020568


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

19) capN in NC_018608


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKGYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF  YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  ANYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSTLYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

20) capN in NC_022222


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 112/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGIHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDIKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK +++ QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQALISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

21) ST398NM01_0176 in NC_017673


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKGYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF  YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  ANYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

22) M013TW_0152 in NC_016928


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 112/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGIHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDIKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK +++ QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQALISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

23) capN in NC_022443


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 112/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGIHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDIKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK +++ QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQALISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

24) capN in NC_022442


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 112/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGIHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDIKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK +++ QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQALISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

25) SAPIG0176 in NC_017333


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  182 bits (675),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKGYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF  YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  ANYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSTLYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

26) SAAG_00645 in NC_022113


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (672),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKGYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF  YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTLLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

27) galE in NC_021670


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (672),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKGYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF  YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTLLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

28) cap5N in NC_017341


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (672),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKGYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF  YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTLLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

29) capN in NC_002952


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (672),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKGYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF  YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTLLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

30) sodA in NC_017347


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (672),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKGYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF  YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTLLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

31) capN in NC_017331


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (672),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKGYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF  YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTLLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

32) MS7_0156 in NC_017351


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (671),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 112/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGHVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLIYSNTL  264
            +NK ++K ++  K++GNL YS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

33) CA347_174 in NC_021554


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (672),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 113/268 (43%), Positives = 188/268 (71%), Gaps = 2/268 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLTDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPVIKNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P   N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTLYEKN  268
            +NK ++K ++  K++GNLTYS+ + +++
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNIDDRE  269

34) SAKOR_00142 in NC_022226


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (671),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 112/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYITHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLIYSNTL  264
            +NK ++K ++  K++GNL YS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

35) BN843_1680 in NC_021059


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (672),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 111/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGHVGKSDQVDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  ++   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TTYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            ++Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLIYSNTL  264
            +NK ++K ++  K++GNL YS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

36) cap5N in NC_002951


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (670),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 111/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGHVGKSDQVDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  ++   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLIYSNTL  264
            +NK ++K ++  K++GNL YS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

37) SAS0137 in NC_002953


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (670),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 112/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKSEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLIYSNTL  264
            +NK ++K ++  K++GNL YS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

38) SAOUHSC_00127 in NC_007795


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (670),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 111/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGHVGKSDQVDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  ++   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLIYSNTL  264
            +NK ++K ++  K++GNL YS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

39) capN in NC_009641


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (670),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 111/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGHVGKSDQVDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  ++   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLIYSNTL  264
            +NK ++K ++  K++GNL YS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

40) cap5N in NC_007793


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (670),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 111/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGHVGKSDQVDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  ++   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLIYSNTL  264
            +NK ++K ++  K++GNL YS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

41) cap5N in NC_010079


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (670),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 111/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGHVGKSDQVDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  ++   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLIYSNTL  264
            +NK ++K ++  K++GNL YS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

42) SAVC_00580 in NC_016912


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  181 bits (670),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 111/264 (43%), Positives = 186/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGHVGKSDQVDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  ++   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLIYSNTL  264
            +NK ++K ++  K++GNL YS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

43) capN in NC_007622


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  180 bits (668),  Expect = 5e-47, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 187/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNILKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLLIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

44) SLGD_00336 in NC_013893


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  180 bits (667),  Expect = 6e-47, Method: Compositional matrix adjust.
 Identities = 121/265 (46%), Positives = 183/265 (70%), Gaps = 4/265 (1%)

Query  3    KNILITGTGGYVGSHLANSLEKSGNKVSRLSVRNSLWENQSFTDYDVIIHTAALVHNNDP  62
            KNILITG  G+VG+++   L++   KV R+S++N+ W   SF +YDVIIH AALVHNN+P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   SAQLEDYFRINMHLPNKLANKAKKDGVNQFIFMSTMAVFGEDGVIGKNIEITDPMKIKPI  122
            +A++ DY   N HL   LA+KAK DGV+QFIF STM++FG +G+I K+ EIT+    KP 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TDYGKSKAKAEEKLLNISSSSFKVVIIRPPMIYGEDSPGNFTKLKKVAKLLPIIPNIHNY  182
            + Y+ SK  AE  + ++    F V I+RPPMIYG  +PGNF+KL KVA+L  I+P+ HN 
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLEQYVNEIITHKKAGIYHPKDEFEF-NTTNVIKEIRKNENKSTIL--LPVPK  239
            RS + I +L + + +++ + K++I HP ++ E+ NT   +  IR++  KS+ L  +PVP+
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHP-QNMEYMNTNTALSLIRNHLGKSSELIEIPVPN  240

Query  240  TIYPLLNKVKFITKLYGNLVYGKDL  264
             I  +++K ++  K+YGNL Y+K++
Sbjct  241  FINKIIEKSNIANKIYGNLTYSKNI  265

45) capN in NC_017353


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  180 bits (667),  Expect = 6e-47, Method: Compositional matrix adjust.
 Identities = 121/265 (46%), Positives = 183/265 (70%), Gaps = 4/265 (1%)

Query  3    KNILITGTGGYVGSHLANSLEKSGNKVSRLSVRNSLWENQSFTDYDVIIHTAALVHNNDP  62
            KNILITG  G+VG+++   L++   KV R+S++N+ W   SF +YDVIIH AALVHNN+P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   SAQLEDYFRINMHLPNKLANKAKKDGVNQFIFMSTMAVFGEDGVIGKNIEITDPMKIKPI  122
            +A++ DY   N HL   LA+KAK DGV+QFIF STM++FG +G+I K+ EIT+    KP 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TDYGKSKAKAEEKLLNISSSSFKVVIIRPPMIYGEDSPGNFTKLKKVAKLLPIIPNIHNY  182
            + Y+ SK  AE  + ++    F V I+RPPMIYG  +PGNF+KL KVA+L  I+P+ HN 
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLEQYVNEIITHKKAGIYHPKDEFEF-NTTNVIKEIRKNENKSTIL--LPVPK  239
            RS + I +L + + +++ + K++I HP ++ E+ NT   +  IR++  KS+ L  +PVP+
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHP-QNMEYMNTNTALSLIRNHLGKSSELIEIPVPN  240

Query  240  TIYPLLNKVKFITKLYGNLVYGKDL  264
             I  +++K ++  K+YGNL Y+K++
Sbjct  241  FINKIIEKSNIANKIYGNLTYSKNI  265

46) SAOV_0109 in NC_017337


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  179 bits (665),  Expect = 1e-46, Method: Compositional matrix adjust.
 Identities = 113/264 (43%), Positives = 185/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKGYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF  YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHLKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +    + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

47) cap5N in NC_017342


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  179 bits (665),  Expect = 1e-46, Method: Compositional matrix adjust.
 Identities = 112/264 (43%), Positives = 185/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKGYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF  YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPENFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   P NF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTLLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

48) cap8N in NC_003923


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  179 bits (665),  Expect = 9e-47, Method: Compositional matrix adjust.
 Identities = 111/264 (43%), Positives = 185/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDALIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YD +IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKSEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINM--PSV  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +  + + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLIYSNTL  264
            +NK ++K ++  K++GNL YS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

49) capN in NC_017763


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  178 bits (659),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 112/264 (43%), Positives = 184/264 (70%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF +YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   TP +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHHKTVLINM--PSM  240
            RS + I +L   I +L+  E +++ HPQ+  Y +T++ +  IR +    + LI++  P+ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLLVFRKLFGNLIYSNTL  264
            +NK ++K  +  K++GNL YS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

50) cap5N in NC_017338


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  177 bits (655),  Expect = 6e-46, Method: Compositional matrix adjust.
 Identities = 110/264 (42%), Positives = 185/264 (71%), Gaps = 2/264 (0%)

Query  3    KNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKGYDVLIHTAALVHNNSP  62
            KNILITG +G++GN ++  L ++  +VD+++++N+ WK  SF  YDV+IH AALVHNN P
Sbjct  2    KNILITGKNGFVGNQFQLLLNNDNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHNNQP  61

Query  63   QARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTSMNPT  122
            +A++ DYM+ N  LT++LA+KAK ++V QFIF STM+++G +G + K  +I   T+ +P 
Sbjct  62   NAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTPYKPK  121

Query  123  TNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQ  182
            + Y+ SK +AE+ +Q LI D F V IVRPPMIYG   PGNF +L+++++   I+P+ +N+
Sbjct  122  SAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPKYHNE  181

Query  183  RSALYIKHLTAFVDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRKSHRKTVLINM--SSM  240
            RS + I +L   + +L+  E +++ HPQ+  Y +T++ +  IR    + + LI++  ++ 
Sbjct  182  RSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIPVPNF  241

Query  241  LNKYFNKLSVFRKLFGNLTYSNTL  264
            +NK ++K ++  K++GNLTYS+ +
Sbjct  242  INKIIEKSNIANKIYGNLTYSKNI  265

51) TEH_03950 in NC_016052


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  156 bits (574),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 113/268 (43%), Positives = 183/268 (69%), Gaps = 12/268 (4%)

Query  1    MKRILITGKNSYIGQTFINWVKSNNVDYKIDTIDLKDLDWKKHDFSIYDCLIHLAAIVHK  60
            MK ILITGKN+++G+ F   ++++N  YK+D + LK+ DWK   F  YD +IHLAA+VH+
Sbjct  1    MKNILITGKNGFVGNQFQLLLNNDN--YKVDRVSLKNNDWKFCSFENYDVIIHLAALVHN  58

Query  61   KSQEDDI--YYRINRDLAVETAQKAKNEGVKQFIFFSTMSVFGVNQGVINKETKLL----  114
            +  +  I  Y   N +L+ E A+KAK++GV QFIFFSTM++FG+N G+INK   +     
Sbjct  59   NQPNAKIIDYMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMN-GLINKKCEITQLTP  117

Query  115  --PKTSYGKSKLEAEKGIRKLGDEQFIVSILRPPMIYGPNASGNYTRLSKLAKKINIFPK  172
              PK++Y+ SKL AE++I+KL D++F+V+I+RPPMIYG +++GN+++L K+A+   IFPK
Sbjct  118  YKPKSAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPK  177

Query  173  VNNQRSMLFVYNLHQFLKITIDNQFSGTFHPKNSIDINTSRLVIEISKCNNKKIHLVNIG  232
             +N+RS++ + NL + +   + N+ S+  HP+N   +NT+  +  I +   K  +L++I 
Sbjct  178  YHNERSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIP  237

Query  233  -SIFVNLLIKNITIFTKVFGTLVYDNNI  259
             + F+N +I +  I  K++G L Y +NI
Sbjct  238  VPNFINKIIEKSNIANKIYGNLTYSKNI  265

52) HMPREF9243_0862 in NC_015278


> U10927|35|G35|16579853|AAL26668.1|Staphylococcus_aureus_M|+|26015..26878|cap1O|-|type 
8 capsule synthesis gene
Length=287

 Score =  149 bits (547),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 110/270 (41%), Positives = 176/270 (66%), Gaps = 11/270 (4%)

Query  1    MKKILITGKHSYIGNQFSQWLAQWPEDYKVVKESLRDGTWRQSDWSNYDVILHVAGIAHN  60
            MK+ILITGK++++GNQF   L +  ++YKV + SL++  W+     NYDVI+H+A++ HN
Sbjct  1    MKNILITGKNGFVGNQFQLLLNN--DNYKVDRVSLKNNDWKFCSFENYDVIIHLAALVHN  58

Query  61   S-SDPKLEDLYYEVNRDLTIEaakkakaEGVGQFIFMSSIIVFG-----SKVSKITKDTP  114
            + +++K+ D Y + N +LT E AKKAK +GV+QFIF S++ +FG     +K   IT+ TP
Sbjct  59   NQPNAKIID-YMNTNYHLTRELAKKAKDDGVSQFIFFSTMGIFGMNGLINKKCEITQLTP  117

Query  115  TNPDNFYGDSKLQAEAGLGELADDQFKVAIVRPPMVYGPGSKGNFPKLSKLAQKTPIFPN  174
             +P + Y+ SKL AE ++  L DD+F V IVRPPM+YG  + GNF+KL K+A+ + IFP+
Sbjct  118  YKPKSAYDYSKLLAERDIQKLIDDKFVVNIVRPPMIYGKKGPGNFAKLIKVANLSRIFPK  177

Query  175  YANKRSMLFIDNLSAALTQIIDEELIGNFYPQNEEYVATSQMVKEIADVHNHQLALVK-G  233
            Y N RS++ IDNL   + +++ +E  +   PQN EY+ T+  +  I +       L+   
Sbjct  178  YHNERSVIHIDNLYKHILHLLKNEKSDITHPQNMEYMNTNTALSLIRNHLGKSSELIEIP  237

Query  234  LTPFV-RIALPIKVINKVFGDLYYDKDLSD  262
            +  F+ +I    ++ NK++G+L Y K++ D
Sbjct  238  VPNFINKIIEKSNIANKIYGNLTYSKNIDD  267