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PAthogenisity Island DataBase (PAI DB)

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Homologs of spaI gene of NC_003198_P5

781

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SE451236_20565
( YP_008267100.1 )

type III secretion system ATPase

NC_021820
(Salmonella enterica 08-1736)

0.0

100

2) invC
( YP_005239003.1 )

ATP synthase SpaL

NC_016856
(Salmonella enterica 14028S)

0.0

100

3) invC
( YP_002227638.1 )

ATP synthase SpaL

NC_011274
(Salmonella enterica 287/91)

0.0

100

4) SBOV29201
( YP_008506742.1 )

surface presentation of antigens

NC_022241
(Salmonella enterica 3114)

0.0

100

5) SEEH1578_23280
( YP_008248702.1 )

ATP synthase SpaL

NC_021810
(Salmonella enterica 41578)

0.0

100

6) invC
( YP_005398257.1 )

secretory apparatus ATP synthase (associated with virulence)

NC_017046
(Salmonella enterica 798)

0.0

100

7) SU5_03375
( YP_006088982.1 )

Type III secretion cytoplasmic ATP synthase

NC_017623
(Salmonella enterica B182)

0.0

100

8) invC
( YP_008482457.1 )

secretory apparatus ATP synthase

NC_022221
(Salmonella enterica CDC1983-67)

0.0

100

9) SEEB0189_05700
( YP_008307491.1 )

type III secretion system ATPase

NC_021844
(Salmonella enterica CFSAN000189)

0.0

100

10) CFSAN001921_02605
( YP_008253929.1 )

type III secretion system ATPase

NC_021814
(Salmonella enterica CFSAN001921)

0.0

100

11) CFSAN001992_19055
( YP_007473527.1 )

ATP synthase SpaL

NC_020307
(Salmonella enterica CFSAN001992)

0.0

100

12) CFSAN002050_20770
( YP_008262025.1 )

type III secretion system ATPase

NC_021818
(Salmonella enterica CFSAN002050)

0.0

100

13) CFSAN002069_17800
( YP_008252320.1 )

type III secretion system ATPase

NC_021812
(Salmonella enterica CFSAN002069)

0.0

100

14) spaI
( NP_457288.1 )

secretory apparatus ATP synthase (associated with virulence)

NC_003198
(Salmonella enterica CT18)

0.0

100

15) SeD_A3204
( YP_002216863.1 )

ATP synthase SpaL

NC_011205
(Salmonella enterica CT_02021853)

0.0

100

16) SeSA_A3047
( YP_002115846.1 )

ATP synthase SpaL

NC_011094
(Salmonella enterica CVM19633)

0.0

100

17) STMMW_28561
( YP_005233883.1 )

secretory apparatus ATP synthase (associated with virulence)

NC_016854
(Salmonella enterica D23580)

0.0

100

18) invC
( NP_461815.1 )

ATP synthase SpaL

NC_003197
(Salmonella enterica LT2)

0.0

100

19) STBHUCCB_29400
( YP_005218440.1 )

ATP synthase spaL

NC_016832
(Salmonella enterica P-stx-12)

0.0

100

20) invC
( YP_002244807.1 )

ATP synthase SpaL

NC_011294
(Salmonella enterica P125109)

0.0

100

21) spaI
( YP_002638470.1 )

ATP synthase SpaL

NC_012125
(Salmonella enterica RKS4594)

0.0

100

22) invC
( YP_005214002.1 )

secretory apparatus ATP synthase (associated with virulence)

NC_016831
(Salmonella enterica RKS5078)

0.0

100

23) I137_13780
( YP_008382157.1 )

type III secretion system ATPase

NC_021984
(Salmonella enterica S06004)

0.0

100

24) invC
( YP_217813.1 )

ATP synthase SpaL

NC_006905
(Salmonella enterica SC-B67)

0.0

100

25) SPAB_03597
( YP_001589771.1 )

ATP synthase SpaL

NC_010102
(Salmonella enterica SGSC4150; SPB7)

0.0

100

26) invC
( YP_005182762.1 )

secretory apparatus ATP synthase (associated with virulence)

NC_016810
(Salmonella enterica SL1344)

0.0

100

27) SNSL254_A3099
( YP_002042135.1 )

ATP synthase SpaL

NC_011080
(Salmonella enterica SL254)

0.0

100

28) SeHA_C3084
( YP_002046854.1 )

ATP synthase SpaL

NC_011083
(Salmonella enterica SL476)

0.0

100

29) SeAg_B3016
( YP_002147791.1 )

ATP synthase SpaL

NC_011149
(Salmonella enterica SL483)

0.0

100

30) invC
( YP_005243875.1 )

ATP synthase SpaL

NC_016857
(Salmonella enterica ST4/74)

0.0

100

31) spaI
( NP_806497.1 )

ATP synthase SpaL

NC_004631
(Salmonella enterica Ty2)

0.0

100

32) TY21A_14125
( YP_007927067.1 )

ATP synthase SpaL

NC_021176
(Salmonella enterica Ty21a)

0.0

100

33) STU288_14625
( YP_007904016.1 )

ATP synthase SpaL

NC_021151
(Salmonella enterica U288)

0.0

100

34) invC
( YP_005253383.1 )

ATP synthase SpaL

NC_016863
(Salmonella enterica UK-1)

0.0

100

35) SN31241_39860
( YP_008361901.1 )

ATP synthase SpaL

NC_021902
(Salmonella enterica USMARC-S3124.1)

0.0

100

36) SSPA2566
( YP_002143411.1 )

ATP synthase SpaL

NC_011147
(Salmonella enterica AKU12601)

0.0

37) spaI
( YP_151921.1 )

virulence-associated secretory apparatus ATP synthase

NC_006511
(Salmonella enterica ATCC 9150)

0.0

38) STMDT12_C29430
( YP_005248639.1 )

flagellum-specific ATP synthase SpaL

NC_016860
(Salmonella enterica T000240)

0.0

39) A464_2918
( YP_008323512.1 )

putative ATP synthase SpaL

NC_021870
(Salmonella bongori N268-08)

0.0

40) spaI
( YP_004731334.1 )

secretory apparatus ATP synthase (associated with virulence)

NC_015761
(Salmonella bongori NCTC 12419)

0.0

41) SARI_00079
( YP_001569174.1 )

ATP synthase SpaL

NC_010067
(Salmonella enterica RSK2980)

0.0

42) invC
( NP_902298.1 )

ATP synthase SpaL

NC_005085
(Chromobacterium violaceum ATCC 12472)

4e-162

43) SG2088
( YP_455768.1 )

ATP synthase SpaL

NC_007712
(Sodalis glossinidius morsitans)

5e-133

44) EC042_3069
( YP_006097364.1 )

type III secretion system protein

NC_017626
(Escherichia coli 042)

1e-131

45) eivC
( YP_006145312.1 )

flagellum-specific ATP synthase

NC_017646
(Escherichia coli CE10)

8e-132

46) ECUMN_3201
( YP_002413885.1 )

ATP synthase SpaL

NC_011751
(Escherichia coli UMN026)

8e-132

47) ECH74115_4146
( YP_002272334.1 )

ATP synthase SpaL

NC_011353
(Escherichia coli EC4115)

2e-130

48) Z4194
( NP_289427.1 )

ATP synthase SpaL

NC_002655
(Escherichia coli EDL933)

2e-130

49) ECs3730
( NP_311757.1 )

ATP synthase SpaL

NC_002695
(Escherichia coli Sakai)

2e-130

50) eivC
( YP_003079648.1 )

ATP synthase SpaL

NC_013008
(Escherichia coli TW14359)

2e-130

51) CDCO157_3483
( YP_006314350.1 )

ATP synthase SpaL

NC_017906
(Escherichia coli Xuzhou21)

2e-130

52) invC
( YP_002924273.1 )

ATP synthase SpaL

NC_012751
(Candidatus Hamiltonella defensa T5A)

5e-129

53) fliI
( YP_008112702.1 )

flagellum-specific ATP synthase

NC_021505
(Pseudomonas putida NBRC 14164)

7e-121

54) spa47
( YP_406188.1 )

ATP synthase SpaL

NC_007607
(Shigella dysenteriae Sd197)

7e-120

55) spa47
( YP_005712041.1 )

ATP synthase

NC_017319
(Shigella flexneri 2002017)

1e-119

56) spa47
( NP_858282.1 )

ATP synthase SpaL

NC_004851
(Shigella flexneri 301)

1e-119

57) spa47
( YP_313366.1 )

ATP synthase SpaL

NC_007385
(Shigella sonnei Ss046)

1e-119

58) SbBS512_A0183
( YP_001883212.1 )

ATP synthase SpaL

NC_010660
(Shigella boydii CDC 3083-94)

3e-119

59) spaL
( YP_005207201.1 )

protein SpaL

NC_016830
(Pseudomonas fluorescens F113)

5e-114

60) EAM_2663
( YP_003539730.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

1e-112

61) spaI1
( YP_003530139.1 )

type III secretion system ATPase SpaI/InvC

NC_013961
(Erwinia amylovora CFBP1430)

1e-112

62) invC
( YP_007030629.1 )

secretory apparatus ATP synthase

NC_019670
(Pseudomonas sp. UW4)

2e-111

63) SG0565
( YP_454245.1 )

ATP synthase SpaL

NC_007712
(Sodalis glossinidius morsitans)

7e-111

64) EAM_1561
( YP_003538643.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

2e-110

65) spaI3
( YP_003530940.1 )

type III secretion system ATPase SpaI/InvC

NC_013961
(Erwinia amylovora CFBP1430)

2e-110

66) ysaN
( YP_001007702.1 )

ATP synthase SpaL

NC_008800
(Yersinia enterocolitica 8081)

6e-110

67) S70_09815
( YP_006216514.1 )

ATP synthase SpaL

NC_017731
(Providencia stuartii MRSN 2154)

2e-109

68) invC
( YP_001907837.1 )

ATP synthase SpaL

NC_010694
(Erwinia tasmaniensis Et1/99)

3e-108

69) invC
( YP_002648998.1 )

ATP synthase SpaL

NC_012214
(Erwinia pyrifoliae Ep1/96)

2e-107

70) invC
( YP_005819296.1 )

ATP synthase SpaL

NC_017445
(Erwinia sp. Ejp617)

7e-106

71) PMI2692
( YP_002152393.1 )

ATP synthase SpaL

NC_010554
(Proteus mirabilis HI4320)

8e-106

72) BB2000_2692
( YP_008399207.1 )

ATP synthase SpaL

NC_022000
(Proteus mirabilis BB2000)

1e-105

73) spaI
( YP_005802901.1 )

type III secretion system ATPase SpaI/InvC

NC_017390
(Erwinia pyrifoliae DSM 12163)

5e-105

74) MU9_32
( YP_007503451.1 )

Flagellum-specific ATP synthase FliI

NC_020418
(Morganella morganii KT)

3e-103

75) yscN
( YP_005082213.1 )

ATP synthase yscN (Yop proteins secretion ATPase)

NC_016642
(Pseudovibrio sp. FO-BEG1)

2e-86

76) yscN
( YP_001004078.1 )

type III secretion system ATPase

NC_008791
(Yersinia enterocolitica 8081)

1e-84

77) yscN
( NP_995371.1 )

type III secretion system ATPase

NC_005813
(Yersinia pestis 91001)

1e-84

78) yscN
( YP_001604472.1 )

type III secretion system ATPase

NC_010157
(Yersinia pestis Angola)

1e-84

79) YPA_CD0022
( YP_636814.1 )

type III secretion system ATPase

NC_008122
(Yersinia pestis Antiqua)

1e-84

80) yscN
( NP_395174.1 )

type III secretion system ATPase

NC_003131
(Yersinia pestis CO92)

1e-84

81) YPDSF_3977
( YP_001154606.1 )

type III secretion system ATPase

NC_009377
(Yersinia pestis Pestoides F)

1e-84

82) pYV0067
( YP_068476.1 )

type III secretion system ATPase

NC_006153
(Yersinia pseudotuberculosis IP 32953)

1e-84

83) YPTS_4285
( YP_001874685.1 )

type III secretion system ATPase

NC_010635
(Yersinia pseudotuberculosis PB1/+)

1e-84

84) Y11_p0781
( YP_006007926.1 )

type III secretion cytoplasmic ATP synthase

NC_017565
(Yersinia enterocolitica Y11)

2e-84

85) ascN
( YP_001144298.1 )

type III secretion system ATPase

NC_009350
(Aeromonas salmonicida A449)

2e-84

86) sctN
( NP_930973.1 )

type III secretion system ATPase

NC_005126
(Photorhabdus luminescens TTO1)

2e-84

87) yscN
( YP_005503173.1 )

type III secretion system ATPase

NC_017153
(Yersinia pestis D106004)

8e-84

88) yscN
( YP_005506956.1 )

type III secretion system ATPase

NC_017157
(Yersinia pestis D182038)

8e-84

89) yscN
( YP_003560532.1 )

type III secretion system ATPase

NC_014017
(Yersinia pestis Z176003)

8e-84

90) sctN
( YP_003039889.1 )

type iii secretion component protein sctn

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

9e-84

91) YE105_P0022
( YP_004424924.1 )

type III secretion system ATPase

NC_015475
(Yersinia enterocolitica 105.5R(r))

1e-83

92) hrcN
( YP_004754980.1 )

HrcN

NC_015856
(Collimonas fungivorans Ter331)

2e-83

93) yscN
( YP_004677249.1 )

ATP synthase yscN

NC_015717
(Hyphomicrobium sp. MC1)

1e-82

94) HCH_03268
( YP_434451.1 )

type III secretion system ATPase

NC_007645
(Hahella chejuensis KCTC 2396)

1e-82

95) PAM18_3349
( YP_005975934.1 )

type III secretion system ATPase

NC_017548
(Pseudomonas aeruginosa M18)

2e-82

96) hrcN
( YP_198730.1 )

type III secretion system ATPase

NC_006834
(Xanthomonas oryzae KACC10331)

2e-82

97) XOO_0085
( YP_449114.1 )

type III secretion system ATPase

NC_007705
(Xanthomonas oryzae MAFF 311018)

2e-82

98) PXO_03396
( YP_001911284.1 )

type III secretion system ATPase

NC_010717
(Xanthomonas oryzae PXO99A)

2e-82

99) PA1697
( NP_250388.1 )

type III secretion system ATPase

NC_002516
(Pseudomonas aeruginosa PAO1)

6e-82

100) sctN
( YP_007365639.1 )

type III secretion system ATPase

NC_020127
(Lawsonia intracellularis N343)

1e-81

101) sctN
( YP_594915.1 )

type III secretion system ATPase

NC_008011
(Lawsonia intracellularis PHE/MN1-00)

1e-81

102) PLES_36301
( YP_002441215.1 )

type III secretion system ATPase

NC_011770
(Pseudomonas aeruginosa LESB58)

8e-82

103) G655_16695
( YP_007710179.1 )

type III secretion system ATPase

NC_020912
(Pseudomonas aeruginosa B136-33)

2e-81

104) PADK2_17215
( YP_006483424.1 )

type III secretion system ATPase

NC_018080
(Pseudomonas aeruginosa DK2)

2e-81

105) pscN
( YP_005980839.1 )

type III secretion system ATPase

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

2e-81

106) pscN
( YP_791548.1 )

type III secretion system ATPase

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

2e-81

107) yscN
( YP_436213.1 )

type III secretion system ATPase

NC_007645
(Hahella chejuensis KCTC 2396)

2e-81

108) xsaS
( YP_003375990.1 )

xanthomonas secretion apparatus protein

NC_013722
(Xanthomonas albilineans GPE PC73)

6e-81

109) NT01EI_0957
( YP_002932405.1 )

type III secretion ATPase FliI/YscN family, putative

NC_012779
(Edwardsiella ictaluri 93-146)

8e-80

110) hrcN
( NP_640767.1 )

type III secretion system ATPase

NC_003919
(Xanthomonas axonopodis 306)

5e-79

111) XAC29_02110
( YP_007634915.1 )

type III secretion system ATPase

NC_020800
(Xanthomonas axonopodis Xac29-1)

5e-79

112) hrcN
( YP_007648837.1 )

HrcN protein

NC_020815
(Xanthomonas citri Aw12879)

5e-79

113) DvMF_2435
( YP_002436844.1 )

type III secretion system ATPase

NC_011769
(Desulfovibrio vulgaris Miyazaki F)

6e-79

114) hrcN
( YP_004850009.1 )

type III secretion system ATPase

NC_016010
(Xanthomonas axonopodis F1)

6e-79

115) hrcN
( YP_005636505.1 )

type III secretion ATPase HrcN

NC_017271
(Xanthomonas campestris 756C)

6e-79

116) hrcN
( YP_001904474.1 )

type III secretion system ATPase

NC_010688
(Xanthomonas campestris B100)

8e-79

117) hrcN
( YP_005630670.1 )

type III secretion ATPase HrcN

NC_017267
(Xanthomonas oryzae BLS256)

2e-78

118) hrcN
( YP_362163.1 )

type III secretion system ATPase

NC_007508
(Xanthomonas campestris 85-10)

3e-78

119) XC_3006
( YP_244074.1 )

type III secretion system ATPase

NC_007086
(Xanthomonas campestris 8004)

3e-78

120) hrcN
( NP_636610.1 )

type III secretion system ATPase

NC_003902
(Xanthomonas campestris ATCC 33913)

3e-78

121) NH44784_014581
( YP_008028553.1 )

Flagellum-specific ATP synthase FliI

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

2e-77

122) rhcN
( NP_768456.1 )

RhcN protein

NC_004463
(Bradyrhizobium japonicum USDA 110)

5e-77

123) rhcN
( YP_005612841.1 )

RhcN protein

NC_017249
(Bradyrhizobium japonicum USDA 6)

5e-77

124) Sbal117_2086
( YP_006037317.1 )

FliI/YscN family ATPase

NC_017579
(Shewanella baltica OS117)

8e-77

125) Sbal_1970
( YP_001050343.1 )

type III secretion system ATPase

NC_009052
(Shewanella baltica OS155)

8e-77

126) Acear_1643
( YP_003828213.1 )

type III secretion system ATPase, FliI/YscN

NC_014378
(Acetohalobium arabaticum DSM 5501)

9e-77

127) Sbal175_2395
( YP_006020952.1 )

FliI/YscN family ATPase

NC_017571
(Shewanella baltica BA175)

1e-76

128) C770_GR4pC1267
( YP_007193550.1 )

ATPase FliI/YscN family

NC_019848
(Sinorhizobium meliloti GR4)

2e-76

129) Halha_0655
( YP_007314721.1 )

type III secretion apparatus H+-transporting two-sector ATPase/flagellar protein export ATPase FliI

NC_019978
(Halobacteroides halobius DSM 5150)

2e-76

130) bscN
( YP_006967892.1 )

ATP synthase in type III secretion system

NC_019382
(Bordetella bronchiseptica 253)

2e-76

131) fliI
( YP_004832786.1 )

flagellum specific ATP synthase

NC_015975
(Lactobacillus ruminis ATCC 27782)

2e-76

132) bscN
( YP_006899829.1 )

ATP synthase in type III secretion system

NC_018829
(Bordetella bronchiseptica MO149)

6e-76

133) bscN
( YP_006625533.1 )

ATP synthase in type III secretion system

NC_018518
(Bordetella pertussis 18323)

6e-76

134) bscN
( YP_005590278.1 )

type III secretion system ATPase

NC_017223
(Bordetella pertussis CS)

6e-76

135) bscN
( NP_880888.1 )

type III secretion system ATPase

NC_002929
(Bordetella pertussis Tohama I)

6e-76

136) Rta_29820
( YP_004620105.1 )

flagellar biosynthesis/type III secretory pathway ATPase

NC_015677
(Ramlibacter tataouinensis TTB310)

1e-75

137) Dred_2405
( YP_001113740.1 )

flagellar protein export ATPase FliI

NC_009253
(Desulfotomaculum reducens MI-1)

1e-75

138) Varpa_4973
( YP_004157244.1 )

type III secretion apparatus h+-transporting two-sector ATPase

NC_014931
(Variovorax paradoxus EPS)

1e-75

139) Sbal195_2274
( YP_001554702.1 )

type III secretion system ATPase

NC_009997
(Shewanella baltica OS195)

1e-75

140) Sbal678_2284
( YP_005273491.1 )

FliI/YscN family ATPase

NC_016901
(Shewanella baltica OS678)

1e-75

141) bscN
( NP_888173.1 )

type III secretion system ATPase

NC_002927
(Bordetella bronchiseptica RB50)

9e-76

142) BN117_1390
( YP_006895372.1 )

ATP synthase in type III secretion system

NC_018828
(Bordetella parapertussis Bpp5)

9e-76

143) fliI
( YP_006788456.1 )

flagellum-specific ATP synthase FliI

NC_018664
(Clostridium acidurici 9a)

9e-76

144) Clos_1482
( YP_001513022.1 )

flagellar protein export ATPase FliI

NC_009922
(Alkaliphilus oremlandii OhILAs)

2e-75

145) SFBM_0957
( YP_004771465.1 )

flagellar protein export ATPase FliI

NC_015913
(Candidatus Arthromitus sp. mouse isolate)

3e-75

146) fliI
( YP_005668612.1 )

flagellar protein export ATPase FliI

NC_017294
(Candidatus Arthromitus sp. SFB-mouse-Yit)

4e-75

147) Hore_16860
( YP_002509431.1 )

flagellar protein export ATPase FliI

NC_011899
(Halothermothrix orenii H 168)

4e-75

148) Psta_4343
( YP_003372850.1 )

FliI/YscN family ATPase

NC_013720
(Pirellula staleyi DSM 6068)

1e-74

149) fliI
( YP_004857301.1 )

flagellar protein export ATPase FliI

NC_016012
(Candidatus Arthromitus sp. SFB-rat-Yit)

6e-75

150) Ethha_2575
( YP_004092799.1 )

FliI/YscN family ATPase

NC_014828
(Ethanoligenens harbinense YUAN-3)

7e-75

151) fliI
( YP_006791443.1 )

flagellum-specific ATP synthase

NC_018665
(Exiguobacterium antarcticum Eab7)

9e-75

152) bscN
( NP_884482.1 )

type III secretion system ATPase

NC_002928
(Bordetella parapertussis 12822)

9e-75

153) Exig_1876
( YP_001814345.1 )

FliI/YscN family ATPase

NC_010556
(Exiguobacterium sibiricum 255-15)

1e-74

154) fliI
( YP_005432271.1 )

putative flagellum-specific ATP synthase

NC_017068
(Selenomonas ruminantium TAM6421)

1e-74

155) ETAC_04210
( YP_007628333.1 )

protein EsaN

NC_020796
(Edwardsiella tarda C07-087)

3e-74

156) esaN
( YP_003294933.1 )

type III secretion system ATPase

NC_013508
(Edwardsiella tarda EIB202)

3e-74

157) esaN
( YP_005698432.1 )

protein EsaN

NC_017309
(Edwardsiella tarda FL6-60)

3e-74

158) mlr6342
( NP_106866.1 )

ATP synthase in type III secretion system, hrcN

NC_002678
(Mesorhizobium loti MAFF303099)

3e-74

159) fliI
( YP_002772960.1 )

flagellum-specific ATP synthase

NC_012491
(Brevibacillus brevis NBRC 100599)

3e-74

160) Desca_1795
( YP_004497554.1 )

flagellar protein export ATPase FliI

NC_015565
(Desulfotomaculum carboxydivorans CO-1-SRB)

3e-74

161) hrcN
( YP_003774217.1 )

type III secretion ATP synthase

NC_014323
(Herbaspirillum seropedicae SmR1)

5e-74

162) CV_2603
( NP_902273.1 )

type III secretion system ATPase

NC_005085
(Chromobacterium violaceum ATCC 12472)

5e-74

163) Cphy_2714
( YP_001559814.1 )

flagellar protein export ATPase FliI

NC_010001
(Clostridium phytofermentans ISDg)

7e-74

164) Thit_1232
( YP_003477058.1 )

flagellar protein export ATPase FliI

NC_013921
(Thermoanaerobacter italicus Ab9)

9e-74

165) Tmath_1283
( YP_003677009.1 )

flagellar protein export ATPase FliI

NC_014209
(Thermoanaerobacter mathranii A3)

9e-74

166) Thebr_1283
( YP_004186240.1 )

FliI/YscN family ATPase

NC_014964
(Thermoanaerobacter brockii Ako-1)

1e-73

167) Teth39_1254
( YP_001665244.1 )

flagellar protein export ATPase FliI

NC_010321
(Thermoanaerobacter pseudethanolicus ATCC 33223)

1e-73

168) Thet_1210
( YP_003904104.1 )

ATPase, FliI/YscN family

NC_014538
(Thermoanaerobacter sp. X513)

1e-73

169) Teth514_1690
( YP_001663312.1 )

flagellar protein export ATPase FliI

NC_010320
(Thermoanaerobacter sp. X514)

1e-73

170) FliI
( NP_623057.1 )

flagellar biosynthesis/type III secretory pathway ATPase

NC_003869
(Thermoanaerobacter tengcongensis MB4)

2e-73

171) Cbei_4265
( YP_001311331.1 )

flagellar protein export ATPase FliI

NC_009617
(Clostridium beijerinckii NCIMB 8052)

3e-73

172) Lcho_1019
( YP_001790055.1 )

flagellar protein export ATPase FliI

NC_010524
(Leptothrix cholodnii SP-6)

3e-73

173) Thewi_1394
( YP_004820100.1 )

flagellar protein export ATPase FliI

NC_015958
(Thermoanaerobacter wiegelii Rt8.B1)

3e-73

174) Moth_0774
( YP_429635.1 )

ATPase FliI/YscN

NC_007644
(Moorella thermoacetica ATCC 39073)

4e-73

175) fliI
( YP_007457526.1 )

flagellum-specific ATP synthase FliI

NC_020291
(Clostridium saccharoperbutylacetonicum N1-4(HMT))

4e-73

176) fliI
( YP_003424997.1 )

flagellum-specific ATP synthase

NC_013791
(Bacillus pseudofirmus OF4)

5e-73

177) Desde_3522
( YP_006431597.1 )

type III secretion system ATPase, FliI/YscN

NC_018017
(Desulfitobacterium dehalogenans ATCC 51507)

5e-73

178) RHE_PD00057
( NP_659980.1 )

type III secretion system ATP synthase

NC_004041
(Rhizobium etli CFN 42)

5e-73

179) Dvul_2988
( YP_961187.1 )

type III secretion system ATPase

NC_008741
(Desulfovibrio vulgaris DP4)

6e-73

180) DVUA0119
( YP_009159.1 )

type III secretion system ATPase

NC_005863
(Desulfovibrio vulgaris Hildenborough)

6e-73

181) Deval_3220
( YP_005703999.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_017311
(Desulfovibrio vulgaris RCH1)

6e-73

182) fliI
( YP_005959530.1 )

flagellar-specific ATP synthase

NC_017542
(Paenibacillus polymyxa M1)

7e-73

183) PPSC2_c2091
( YP_003946304.1 )

flagellar protein export ATPase flii

NC_014622
(Paenibacillus polymyxa SC2)

7e-73

184) fliI
( YP_006180656.1 )

flagellar export ATPase

NC_017668
(Halobacillus halophilus DSM 2266)

7e-73

185) fliI
( YP_004375667.1 )

flagellum-specific ATP synthase

NC_015391
(Carnobacterium sp. 17-4)

8e-73

186) fliI
( YP_003936763.1 )

flagellum-specific ATP synthase

NC_014614
(Clostridium sticklandii DSM 519)

8e-73

187) Geoth_2698
( YP_004588667.1 )

flagellar protein export ATPase FliI

NC_015660
(Geobacillus thermoglucosidasius C56-YS93)

9e-73

188) PPE_01886
( YP_003870260.1 )

flagellum-specific ATP synthase

NC_014483
(Paenibacillus polymyxa E681)

2e-72

189) Pjdr2_3454
( YP_003012173.1 )

FliI/YscN family ATPase

NC_012914
(Paenibacillus sp. JDR-2)

2e-72

190) HPL003_18150
( YP_005076595.1 )

flagellum-specific ATP synthase

NC_016641
(Paenibacillus terrae HPL-003)

2e-72

191) sctN
( YP_008396.1 )

type III secretion system ATPase

NC_005861
(Candidatus Protochlamydia amoebophila UWE25)

2e-72

192) hrcN
( YP_001984352.1 )

type III secretion system ATP synthase

NC_010996
(Rhizobium etli CIAT 652)

2e-72

193) GY4MC1_2685
( YP_003989992.1 )

ATPase, FliI/YscN family

NC_014650
(Geobacillus sp. Y4.1MC1)

3e-72

194) escN
( YP_002331410.1 )

translocator EscN

NC_011601
(Escherichia coli E2348/69)

1e-71

195) Clopa_2934
( YP_007941449.1 )

flagellar protein export ATPase FliI

NC_021182
(Clostridium pasteurianum BC1)

1e-71

196) GYMC10_4188
( YP_003244222.1 )

flagellar protein export ATPase FliI

NC_013406
(Paenibacillus sp. Y412MC10)

7e-72

197) FliI
( YP_001212635.1 )

flagellar biosynthesis/type III secretory pathway ATPase

NC_009454
(Pelotomaculum thermopropionicum SI)

7e-72

198) SVI_2234
( YP_003556983.1 )

ATPase

NC_014012
(Shewanella violacea DSS12)

7e-72

199) Selsp_1699
( YP_004414114.1 )

ATPase, FliI/YscN family

NC_015437
(Selenomonas sputigena ATCC 35185)

8e-72

200) Clo1100_2408
( YP_005148385.1 )

flagellar protein export ATPase FliI

NC_016791
(Clostridium sp. BNL1100)

8e-72

201) Theco_2102
( YP_007213222.1 )

flagellar protein export ATPase FliI

NC_019897
(Thermobacillus composti KWC4)

9e-72

202) fliI
( YP_002949240.1 )

flagellum-specific ATP synthase

NC_012793
(Geobacillus sp. WCH70)

1e-71

203) fliI
( YP_001125196.1 )

flagellum-specific ATP synthase

NC_009328
(Geobacillus thermodenitrificans NG80-2)

2e-71

204) Desru_1241
( YP_004544801.1 )

FliI/YscN family ATPase

NC_015589
(Desulfotomaculum ruminis DSM 2154)

2e-71

205) Trebr_0967
( YP_004439534.1 )

FliI/YscN family ATPase

NC_015500
(Treponema brennaborense DSM 12168)

2e-71

206) escN
( YP_003236088.1 )

translocator EscN

NC_013364
(Escherichia coli 11128)

2e-71

207) Tmar_0981
( YP_004101821.1 )

type III secretion system ATPase, FliI/YscN

NC_014831
(Thermaerobacter marianensis DSM 12885)

2e-71

208) Meso_0107
( YP_672677.1 )

FliI/YscN family ATPase

NC_008254
(Chelativorans sp. BNC1)

3e-71

209) Dhaf_4147
( YP_002460591.1 )

peptidase C14, ICE, catalytic subunit p20, active site

NC_011830
(Desulfitobacterium hafniense DCB-2)

3e-71

210) fliI
( YP_007372197.1 )

flagellum-specific ATP synthase FliI

NC_020134
(Clostridium stercorarium DSM 8532)

3e-71

211) fliI
( YP_007678655.1 )

FliI

NC_020887
(Clostridium stercorarium DSM 8532)

3e-71

212) escN
( YP_003501874.1 )

escN

NC_013941
(Escherichia coli CB9615)

4e-71

213) ECH74115_5062
( YP_002273166.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_011353
(Escherichia coli EC4115)

4e-71

214) escN
( NP_290268.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

4e-71

215) ECO55CA74_21225
( YP_006161350.1 )

escN

NC_017656
(Escherichia coli RM12579)

4e-71

216) ECs4568
( NP_312595.1 )

EscN

NC_002695
(Escherichia coli Sakai)

4e-71

217) escN
( YP_003080480.1 )

LEE-encoded type III secretion system factor

NC_013008
(Escherichia coli TW14359)

4e-71

218) CDCO157_4303
( YP_006315168.1 )

protein EscN

NC_017906
(Escherichia coli Xuzhou21)

4e-71

219) fliI1
( NP_991815.1 )

type III secretion system ATPase

NC_005810
(Yersinia pestis 91001)

4e-71

220) YpsIP31758_3818
( YP_001402772.1 )

type III secretion system ATPase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

4e-71

221) DSY2986
( YP_519219.1 )

hypothetical protein

NC_007907
(Desulfitobacterium hafniense Y51)

4e-71

222) B1NLA3E_18115
( YP_007911866.1 )

flagellum-specific ATP synthase

NC_021171
(Bacillus sp. 1NLA3E)

4e-71

223) YPA_4016
( YP_653922.1 )

type III secretion system ATPase

NC_008150
(Yersinia pestis Antiqua)

5e-71

224) YPN_3401
( YP_649328.1 )

type III secretion system ATPase

NC_008149
(Yersinia pestis Nepal516)

5e-71

225) YPDSF_3704
( YP_001165027.1 )

type III secretion system ATPase

NC_009381
(Yersinia pestis Pestoides F)

5e-71

226) A1122_03805
( YP_005520456.1 )

type III secretion system ATPase

NC_017168
(Yersinia pestis A1122)

5e-71

227) YpAngola_A3933
( YP_001608232.1 )

type III secretion system ATPase

NC_010159
(Yersinia pestis Angola)

5e-71

228) YPO0267
( YP_002345348.1 )

type III secretion system ATPase

NC_003143
(Yersinia pestis CO92)

5e-71

229) YPD4_0231
( YP_005503443.1 )

flagellum-specific ATP synthase

NC_017154
(Yersinia pestis D106004)

5e-71

230) YPD8_0236
( YP_005507319.1 )

flagellum-specific ATP synthase

NC_017160
(Yersinia pestis D182038)

5e-71

231) YPC_0741
( YP_005622727.1 )

putative type III secretion system ATP synthase

NC_017265
(Yersinia pestis Harbin 35)

5e-71

232) fliI
( NP_667863.1 )

type III secretion system ATPase

NC_004088
(Yersinia pestis KIM)

5e-71

233) YPZ3_0229
( YP_003566401.1 )

flagellum-specific ATP synthase

NC_014029
(Yersinia pestis Z176003)

5e-71

234) YPTB0323
( YP_068869.1 )

type III secretion system ATPase

NC_006155
(Yersinia pseudotuberculosis IP 32953)

5e-71

235) YPTS_0347
( YP_001870793.1 )

type III secretion system ATPase

NC_010634
(Yersinia pseudotuberculosis PB1/+)

5e-71

236) fliI
( YP_001920205.1 )

flagellar protein export ATPase FliI

NC_010723
(Clostridium botulinum Alaska E43)

5e-71

237) hrcN
( YP_006032361.1 )

hrp protein hrcn

NC_017575
(Ralstonia solanacearum Po82)

6e-71

238) sctO
( YP_004672369.1 )

type III secretion chaperone

NC_015713
(Simkania negevensis Z)

6e-71

239) NT01CX_1905
( YP_877978.1 )

flagellum-specific ATP synthase

NC_008593
(Clostridium novyi NT)

6e-71

240) H045_00170
( YP_007395606.1 )

type III secretion ATP synthase RscN

NC_020209
(Pseudomonas poae RE*1-1-14)

6e-71

241) Sgly_0598
( YP_004264962.1 )

type III secretion system ATPase, FliI/YscN

NC_015172
(Syntrophobotulus glycolicus DSM 8271)

6e-71

242) TepRe1_1222
( YP_004460675.1 )

flagellar protein export ATPase FliI

NC_015519
(Tepidanaerobacter acetatoxydans Re1)

6e-71

243) fliI
( YP_008618897.1 )

flagellar-specific ATPase

NC_019954
(Tepidanaerobacter acetatoxydans Re1)

6e-71

244) hscN
( YP_003811263.1 )

type III secretion system ATPase

NC_014366
(gamma proteobacterium HdN1)

8e-71

245) ssaN
( YP_002923049.1 )

type III secretion system ATPase

NC_012751
(Candidatus Hamiltonella defensa T5A)

8e-71

246) sctN
( YP_004022622.1 )

type III secretion cytoplasmic ATPase SctN

NC_014718
(Burkholderia rhizoxinica HKI 454)

9e-71

247) Cthe_0468
( YP_001036899.1 )

flagellar protein export ATPase FliI

NC_009012
(Clostridium thermocellum ATCC 27405)

9e-71

248) Clo1313_1752
( YP_005688260.1 )

FliI/YscN family ATPase

NC_017304
(Clostridium thermocellum DSM 1313)

9e-71

249) YPK_3906
( YP_001722624.1 )

type III secretion system ATPase

NC_010465
(Yersinia pseudotuberculosis YPIII)

1e-70

250) Bsel_1744
( YP_003699818.1 )

flagellar protein export ATPase FliI

NC_014219
(Bacillus selenitireducens MLS10)

1e-70

251) fliI
( YP_004526981.1 )

flagellar protein export ATPase FliI

NC_015577
(Treponema azotonutricium ZAS-9)

1e-70

252) Clocl_1964
( YP_005046490.1 )

type III secretion system ATPase, FliI/YscN

NC_016627
(Clostridium clariflavum DSM 19732)

2e-70

253) Ccel_2048
( YP_002506374.1 )

ATPase FliI/YscN

NC_011898
(Clostridium cellulolyticum H10)

2e-70

254) Rmar_0787
( YP_003290073.1 )

FliI/YscN family ATPase

NC_013501
(Rhodothermus marinus DSM 4252)

2e-70

255) escN
( YP_003366502.1 )

T3SS translocator EscN

NC_013716
(Citrobacter rodentium ICC168)

3e-70

256) fliI
( YP_175762.1 )

flagellum-specific ATP synthase

NC_006582
(Bacillus clausii KSM-K16)

3e-70

257) fliI
( YP_004530526.1 )

flagellar protein export ATPase FliI

NC_015578
(Treponema primitia ZAS-2)

3e-70

258) sctN
( YP_003709967.1 )

type III secretion cytoplasmic ATPase SctN

NC_014225
(Waddlia chondrophila WSU 86-1044)

5e-70

259) Desku_1782
( YP_004517151.1 )

flagellar protein export ATPase FliI

NC_015573
(Desulfotomaculum kuznetsovii DSM 6115)

5e-70

260) fliI
( YP_001680791.1 )

flagellar protein export ATPase flii

NC_010337
(Heliobacterium modesticaldum Ice1)

5e-70

261) Rhom172_2094
( YP_004825833.1 )

FliI/YscN family ATPase

NC_015966
(Rhodothermus marinus SG0.5JP17-172)

5e-70

262) GYMC52_1129
( YP_004131738.1 )

FliI/YscN family ATPase

NC_014915
(Geobacillus sp. Y412MC52)

6e-70

263) fliI
( YP_003253104.1 )

flagellum-specific ATP synthase

NC_013411
(Geobacillus sp. Y412MC61)

6e-70

264) ECBG_01249
( YP_007751363.1 )

flagellar protein export ATPase FliI

NC_020995
(Enterococcus casseliflavus EC20)

6e-70

265) fliI
( YP_002523930.1 )

flagellar protein export ATPase FliI

NC_011961
(Thermomicrobium roseum DSM 5159)

7e-70

266) fliI
( YP_147075.1 )

flagellum-specific ATP synthase

NC_006510
(Geobacillus kaustophilus HTA426)

1e-69

267) Marme_1076
( YP_004312187.1 )

FliI/YscN family ATPase

NC_015276
(Marinomonas mediterranea MMB-1)

8e-70

268) Clocel_1717
( YP_003843225.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_014393
(Clostridium cellulovorans 743B)

8e-70

269) Fnod_0758
( YP_001410268.1 )

flagellar protein export ATPase FliI

NC_009718
(Fervidobacterium nodosum Rt17-B1)

8e-70

270) fliL
( NP_348777.1 )

flagellar-Type ATPase

NC_003030
(Clostridium acetobutylicum ATCC 824)

8e-70

271) fliI
( YP_004636823.1 )

flagellar-type ATPase

NC_015687
(Clostridium acetobutylicum DSM 1731)

8e-70

272) CEA_G2173
( YP_005671305.1 )

Flagellar-Type ATPase

NC_017295
(Clostridium acetobutylicum EA 2018)

8e-70

273) Tresu_1125
( YP_004365334.1 )

FliI/YscN family ATPase

NC_015385
(Treponema succinifaciens DSM 2489)

8e-70

274) Anamo_0264
( YP_006443249.1 )

type III secretion system ATPase, FliI/YscN

NC_018024
(Anaerobaculum mobile DSM 13181)

2e-69

275) rhcN
( YP_002824493.1 )

type III secretion component, RhcN, ATP synthase

NC_012586
(Sinorhizobium fredii NGR234)

2e-69

276) GC56T3_2331
( YP_003671878.1 )

flagellar protein export ATPase FliI

NC_014206
(Geobacillus sp. C56-T3)

2e-69

277) fliI
( YP_007401436.1 )

flagellum-specific ATP synthase

NC_020210
(Geobacillus sp. GHH01)

2e-69

278) C770_GR4pB208
( YP_007192278.1 )

Flagellar biosynthesis/type III secretory pathway ATPase

NC_019847
(Sinorhizobium meliloti GR4)

2e-69

279) fliI
( YP_003624062.1 )

flagellum-specific ATP synthase

NC_014145
(Thiomonas sp. 3As)

2e-69

280) fliI
( YP_006913534.1 )

Flagellum-specific ATP synthase FliI

NC_018867
(Dehalobacter sp. CF)

2e-69

281) fliI
( YP_006910546.1 )

Flagellum-specific ATP synthase FliI

NC_018866
(Dehalobacter sp. DCA)

2e-69

282) fliI
( NP_971825.1 )

flagellum-specific ATP synthase FliI

NC_002967
(Treponema denticola ATCC 35405)

2e-69

283) hrcN
( YP_003749790.1 )

type III secretion system ATPase

NC_014310
(Ralstonia solanacearum PSI07)

3e-69

284) fliI
( YP_001885044.1 )

flagellar protein export ATPase FliI

NC_010674
(Clostridium botulinum Eklund 17B)

3e-69

285) GTCCBUS3UF5_14130
( YP_004981826.1 )

flagellar-specific ATP synthase

NC_016593
(Geobacillus thermoleovorans CCB_US3_UF5)

3e-69

286) sctN, cdsN
( YP_004651370.1 )

type III secretion ATPase

NC_015702
(Parachlamydia acanthamoebae UV-7)

5e-69

287) PSEBR_a5386
( YP_004356896.1 )

type III secretion protein

NC_015379
(Pseudomonas brassicacearum NFM421)

5e-69

288) PM3016_5159
( YP_005315028.1 )

protein FliI

NC_016935
(Paenibacillus mucilaginosus 3016)

6e-69

289) fliI
( YP_006192001.1 )

ATP synthase

NC_017672
(Paenibacillus mucilaginosus K02)

6e-69

290) fliI
( YP_005675557.1 )

flagellar protein export ATPase FliI

NC_017297
(Clostridium botulinum 230613)

1e-68

291) fliI
( YP_002863651.1 )

flagellar protein export ATPase FliI

NC_012658
(Clostridium botulinum 657)

1e-68

292) fliI
( YP_001391960.1 )

flagellar protein export ATPase FliI

NC_009699
(Clostridium botulinum Langeland)

1e-68

293) fliI
( YP_001787980.1 )

flagellar protein export ATPase FliI

NC_010520
(Clostridium botulinum Loch Maree)

1e-68

294) fliI
( YP_076827.1 )

flagellar-specific ATP synthase

NC_006177
(Symbiobacterium thermophilum IAM 14863)

7e-69

295) fliI
( YP_005327832.1 )

flagellum-specific ATP synthase

NC_016943
(Blastococcus saxobsidens DD2)

8e-69

296) fliI
( YP_008238077.1 )

Flagellum-specific ATP synthase FliI

NC_021745
(Ralstonia solanacearum FQY_4)

8e-69

297) hrcN
( NP_522431.1 )

type III secretion system ATPase

NC_003296
(Ralstonia solanacearum GMI1000)

8e-69

298) fliI
( YP_001019765.1 )

flagellar biosynthesis ATPase

NC_008825
(Methylibium petroleiphilum PM1)

9e-69

299) TherJR_1539
( YP_003640293.1 )

flagellar protein export ATPase FliI

NC_014152
(Thermincola potens JR)

1e-68

300) Tnap_0848
( YP_003346354.1 )

flagellar protein export ATPase FliI

NC_013642
(Thermotoga naphthophila RKU-10)

1e-68

301) Tpet_0706
( YP_001244302.1 )

flagellar protein export ATPase FliI

NC_009486
(Thermotoga petrophila RKU-1)

1e-68

302) fliI
( YP_001255158.1 )

flagellar protein export ATPase FliI

NC_009495
(Clostridium botulinum ATCC 3502)

1e-68

303) fliI
( YP_004644211.1 )

protein FliI

NC_015690
(Paenibacillus mucilaginosus KNP414)

2e-68

304) fliI
( YP_001384903.1 )

flagellar protein export ATPase FliI

NC_009697
(Clostridium botulinum ATCC 19397)

2e-68

305) fliI
( YP_001388372.1 )

flagellar protein export ATPase FliI

NC_009698
(Clostridium botulinum Hall)

2e-68

306) fliI
( YP_002805163.1 )

flagellar protein export ATPase FliI

NC_012563
(Clostridium botulinum Kyoto)

2e-68

307) fliI
( YP_001782276.1 )

flagellar protein export ATPase FliI

NC_010516
(Clostridium botulinum Okra)

2e-68

308) EAT1b_2917
( YP_002887276.1 )

FliI/YscN family ATPase

NC_012673
(Exiguobacterium sp. AT1b)

2e-68

309) fliI
( YP_003206642.1 )

flagellum-specific ATP synthase

NC_013260
(Candidatus Methylomirabilis oxyfera )

3e-68

310) Tint_1218
( YP_003642936.1 )

flagellar protein export ATPase FliI

NC_014153
(Thiomonas intermedia K12)

3e-68

311) fliI
( NP_870547.1 )

flagellum-specific ATP synthase

NC_005027
(Rhodopirellula baltica SH 1)

3e-68

312) Cwoe_0041
( YP_003391852.1 )

flagellar protein export ATPase FliI

NC_013739
(Conexibacter woesei DSM 14684)

4e-68

313) CTC01673
( NP_782272.1 )

flagellum-specific ATP synthase

NC_004557
(Clostridium tetani E88)

4e-68

314) CPE3_0037
( YP_008583208.1 )

type III secretion ATPase

NC_022441
(Chlamydia pecorum P787)

6e-68

315) CPE1_0037
( YP_008581362.1 )

type III secretion system ATPase

NC_022439
(Chlamydia pecorum PV3056/3)

6e-68

316) CPE2_0037
( YP_008582283.1 )

type III secretion system ATPase

NC_022440
(Chlamydia pecorum W73)

6e-68

317) G5S_0335
( YP_004377044.1 )

type III secretion cytoplasmic ATPase SctN

NC_015408
(Chlamydophila pecorum E58)

6e-68

318) Selin_2210
( YP_004113486.1 )

ATPase, FliI/YscN family

NC_014836
(Desulfurispirillum indicum S5)

6e-68

319) TRQ2_0730
( YP_001738765.1 )

flagellar protein export ATPase FliI

NC_010483
(Thermotoga sp. RQ2)

6e-68

320) Adeg_2041
( YP_003239969.1 )

flagellar protein export ATPase FliI

NC_013385
(Ammonifex degensii KC4)

8e-68

321) hrcN
( YP_005210973.1 )

protein HrcN

NC_016830
(Pseudomonas fluorescens F113)

9e-68

322) fliI
( YP_001394546.1 )

hypothetical protein

NC_009706
(Clostridium kluyveri DSM 555)

9e-68

323) CKR_1054
( YP_002471519.1 )

hypothetical protein

NC_011837
(Clostridium kluyveri NBRC 12016)

9e-68

324) PSPPH_2530
( YP_274726.1 )

type III secretion component

NC_005773
(Pseudomonas syringae 1448A)

1e-67

325) SG1301
( YP_454981.1 )

type III secretion system ATPase

NC_007712
(Sodalis glossinidius morsitans)

1e-67

326) Ferpe_0492
( YP_005470749.1 )

type III secretion system ATPase, FliI/YscN

NC_017095
(Fervidobacterium pennivorans DSM 9078)

1e-67

327) H04402_02754
( YP_005679292.1 )

flagellum-specific ATP synthase FliI

NC_017299
(Clostridium botulinum H04402 065)

1e-67

328) Desmer_3913
( YP_006623620.1 )

type III secretion system ATPase, FliI/YscN

NC_018515
(Desulfosporosinus meridiei DSM 13257)

1e-67

329) NAL212_0483
( YP_004293590.1 )

flagellar protein export ATPase FliI

NC_015222
(Nitrosomonas sp. AL212)

1e-67

330) sctN
( NP_296424.1 )

type III secretion cytoplasmic ATPase SctN

NC_002620
(Chlamydia muridarum Nigg)

2e-67

331) TM0218
( NP_228033.1 )

flagellum-specific ATP synthase

NC_000853
(Thermotoga maritima MSB8)

2e-67

332) Tmari_0216
( YP_007976567.1 )

Flagellum-specific ATP synthase FliI

NC_021214
(Thermotoga maritima MSB8)

2e-67

333) COPRO5265_0319
( YP_002246686.1 )

flagellum-specific ATP synthase

NC_011295
(Coprothermobacter proteolyticus DSM 5265)

2e-67

334) fliI
( YP_004916198.1 )

flagellum-specific ATP synthase

NC_016112
(Methylomicrobium alcaliphilum 20Z)

2e-67

335) Glov_3301
( YP_001953527.1 )

flagellar protein export ATPase FliI

NC_010814
(Geobacter lovleyi SZ)

2e-67

336) rscN
( YP_006322227.1 )

type III secretion ATP synthase RscN

NC_017911
(Pseudomonas fluorescens A506)

2e-67

337) REMIM1_PE00269
( YP_008368023.1 )

type III secretion system FliI/YscN family ATP synthase protein

NC_021909
(Rhizobium etli Mim1)

3e-67

338) Ser39006_2915
( YP_008523297.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_022268
(Serratia sp. ATCC 39006)

6e-67

339) A11Q_2143
( YP_007645966.1 )

flagellum-specific ATP synthase

NC_020813
(Bdellovibrio exovorus JSS)

6e-67

340) fliI
( YP_006557348.1 )

flagellum-specific ATP synthase

NC_018268
(Marinobacter sp. BSs20148)

6e-67

341) CTN_0467
( YP_002534009.1 )

Flagellum-specific ATP synthase

NC_011978
(Thermotoga neapolitana DSM 4359)

1e-66

342) RHOM_06955
( YP_004838438.1 )

Na+-transporting two-sector ATPase

NC_015977
(Roseburia hominis A2-183)

7e-67

343) fliI
( YP_006713220.1 )

flagellum-specific ATP synthase

NC_006322
(Bacillus licheniformis DSM 13)

8e-67

344) fliI
( YP_079017.1 )

flagellum-specific ATP synthase

NC_006270
(Bacillus licheniformis DSM 13)

8e-67

345) TOL_2514
( YP_007683150.1 )

flagellum-specific ATP synthase

NC_020888
(Thalassolituus oleivorans MIL-1)

1e-66

346) Gobs_0975
( YP_003408107.1 )

flagellar protein export ATPase FliI

NC_013757
(Geodermatophilus obscurus DSM 43160)

2e-66

347) PC1_2208
( YP_003017783.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_012917
(Pectobacterium carotovorum PC1)

2e-66

348) PCC21_022860
( YP_006646942.1 )

HrcN

NC_018525
(Pectobacterium carotovorum PCC21)

3e-66

349) Swol_0852
( YP_753541.1 )

Sodium-transporting two-sector ATPase

NC_008346
(Syntrophomonas wolfei Goettingen)

3e-66

350) escN
( YP_003223475.1 )

translocator EscN

NC_013353
(Escherichia coli 12009)

4e-66

351) fliI
( YP_001100154.1 )

flagellum-specific ATP synthase

NC_009138
(Herminiimonas arsenicoxydans )

4e-66

352) Dtox_0691
( YP_003190228.1 )

FliI/YscN family ATPase

NC_013216
(Desulfotomaculum acetoxidans DSM 771)

5e-66

353) Hipma_1198
( YP_004340219.1 )

FliI/YscN family ATPase

NC_015318
(Hippea maritima DSM 10411)

6e-66

354) Ppro_3429
( YP_903079.1 )

flagellar protein export ATPase FliI

NC_008609
(Pelobacter propionicus DSM 2379)

6e-66

355) fliI
( YP_359843.1 )

flagellum-specific ATP synthase

NC_007503
(Carboxydothermus hydrogenoformans Z-2901)

1e-65

356) Dbac_3032
( YP_003159523.1 )

FliI/YscN family ATPase

NC_013173
(Desulfomicrobium baculatum DSM 4028)

1e-65

357) ROI_20930
( YP_007832158.1 )

type III secretion system ATPase, FliI/YscN

NC_021040
(Roseburia intestinalis M50/1)

1e-65

358) escN
( YP_003232153.1 )

T3SS structure protein EscN

NC_013361
(Escherichia coli 11368)

7e-66

359) Q91_0720
( YP_006837261.1 )

flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN

NC_018697
(Cycloclasticus sp. P1; MCCC 1A01040)

8e-66

360) Daro_0770
( YP_283996.1 )

ATPase FliI/YscN

NC_007298
(Dechloromonas aromatica RCB)

8e-66

361) CFSAN002050_13470
( YP_008260605.1 )

type III secretion system ATPase

NC_021818
(Salmonella enterica CFSAN002050)

1e-65

362) Spica_1667
( YP_004698318.1 )

ATPase

NC_015732
(Treponema caldaria DSM 7334)

1e-65

363) SBOV14121
( YP_008505282.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_022241
(Salmonella enterica 3114)

2e-65

364) SE451236_12940
( YP_008265614.1 )

type III secretion system ATPase

NC_021820
(Salmonella enterica 08-1736)

2e-65

365) ssaN
( YP_005237285.1 )

type III secretion system ATPase

NC_016856
(Salmonella enterica 14028S)

2e-65

366) SEEH1578_16310
( YP_008247321.1 )

type III secretion system ATPase SsaN

NC_021810
(Salmonella enterica 41578)

2e-65

367) SSPA1336
( YP_002142175.1 )

type III secretion system ATPase

NC_011147
(Salmonella enterica AKU12601)

2e-65

368) ssaN
( YP_150689.1 )

type III secretion ATP synthase

NC_006511
(Salmonella enterica ATCC 9150)

2e-65

369) SU5_02031
( YP_006087665.1 )

Flagellum-specific ATP synthase FliI

NC_017623
(Salmonella enterica B182)

2e-65

370) SEEB0189_12460
( YP_008308807.1 )

type III secretion system ATPase

NC_021844
(Salmonella enterica CFSAN000189)

2e-65

371) CFSAN001921_10070
( YP_008255388.1 )

type III secretion system ATPase

NC_021814
(Salmonella enterica CFSAN001921)

2e-65

372) CFSAN001992_04515
( YP_007470661.1 )

type III secretion system ATPase SsaN

NC_020307
(Salmonella enterica CFSAN001992)

2e-65

373) CFSAN002069_01925
( YP_008249245.1 )

type III secretion system ATPase

NC_021812
(Salmonella enterica CFSAN002069)

2e-65

374) SeSA_A1511
( YP_002114428.1 )

type III secretion system ATPase

NC_011094
(Salmonella enterica CVM19633)

2e-65

375) STMMW_14201
( YP_005232474.1 )

putative type III secretion ATP synthase

NC_016854
(Salmonella enterica D23580)

2e-65

376) ssaN
( NP_460380.1 )

type III secretion system ATPase

NC_003197
(Salmonella enterica LT2)

2e-65

377) SPAB_01910
( YP_001588133.1 )

type III secretion system ATPase

NC_010102
(Salmonella enterica SGSC4150; SPB7)

2e-65

378) ssaN
( YP_005181259.1 )

type III secretion ATP synthase

NC_016810
(Salmonella enterica SL1344)

2e-65

379) SNSL254_A1526
( YP_002040667.1 )

type III secretion system ATPase

NC_011080
(Salmonella enterica SL254)

2e-65

380) SeHA_C1548
( YP_002045418.1 )

type III secretion system ATPase

NC_011083
(Salmonella enterica SL476)

2e-65

381) SeAg_B1758
( YP_002146627.1 )

type III secretion system ATPase

NC_011149
(Salmonella enterica SL483)

2e-65

382) ssaN
( YP_005242316.1 )

type III secretion system ATPase

NC_016857
(Salmonella enterica ST4/74)

2e-65

383) STMDT12_C14310
( YP_005247127.1 )

type III secretion system ATPase

NC_016860
(Salmonella enterica T000240)

2e-65

384) STU288_03395
( YP_007901784.1 )

type III secretion system ATPase SsaN

NC_021151
(Salmonella enterica U288)

2e-65

385) ssaN
( YP_005251919.1 )

type III secretion system ATPase

NC_016863
(Salmonella enterica UK-1)

2e-65

386) Mahau_0855
( YP_004462875.1 )

type III secretion system ATPase, FliI/YscN

NC_015520
(Mahella australiensis 50-1 BON)

2e-65

387) hrcN
( YP_050178.1 )

type III secretion system protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

2e-65

388) fliI
( YP_003213316.1 )

flagellum-specific ATP synthase

NC_013315
(Clostridium difficile CD196)

2e-65

389) fliI
( YP_003216762.1 )

flagellum-specific ATP synthase

NC_013316
(Clostridium difficile R20291)

2e-65

390) fliI
( YP_003779195.1 )

flagellum-specific ATP synthase

NC_014328
(Clostridium ljungdahlii ATCC 49587)

2e-65

391) fliI
( YP_001086719.1 )

ATP synthase subunit beta FliI

NC_009089
(Clostridium difficile 630)

3e-65

392) ssaN
( YP_005396812.1 )

type III secretion ATP synthase

NC_017046
(Salmonella enterica 798)

3e-65

393) SN31241_24850
( YP_008360401.1 )

secretion system apparatus ATP synthase SsaN

NC_021902
(Salmonella enterica USMARC-S3124.1)

3e-65

394) fliI
( YP_002335389.1 )

flagellar protein export ATPase FliI

NC_011653
(Thermosipho africanus TCF52B)

3e-65

395) Taci_1334
( YP_003317847.1 )

FliI/YscN family ATPase

NC_013522
(Thermanaerovibrio acidaminovorans DSM 6589)

4e-65

396) Geob_0497
( YP_002535967.1 )

ATPase FliI/YscN

NC_011979
(Geobacter daltonii FRC-32)

4e-65

397) fliI
( YP_002140623.1 )

flagellum-specific ATPase FliI

NC_011146
(Geobacter bemidjiensis Bem)

4e-65

398) Nit79A3_0497
( YP_004693776.1 )

flagellar protein export ATPase FliI

NC_015731
(Nitrosomonas sp. Is79A3)

5e-65

399) Acav_0530
( YP_004233020.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_015138
(Acidovorax avenae ATCC 19860)

5e-65

400) GM21_3919
( YP_003023694.1 )

FliI/YscN family ATPase

NC_012918
(Geobacter sp. M21)

5e-65

401) Marpi_1086
( YP_005096796.1 )

flagellar protein export ATPase FliI

NC_016751
(Marinitoga piezophila KA3)

5e-65

402) Q7C_2350
( YP_006294171.1 )

flagellum-specific ATP synthase FliI

NC_017856
(Methylophaga sp. JAM7)

7e-65

403) CCALI_01244
( YP_008089184.1 )

type III secretion system ATPase, FliI/YscN

NC_021487
(Chthonomonas calidirosea T49)

7e-65

404) Aave_0463
( YP_968844.1 )

type III secretion system ATPase

NC_008752
(Acidovorax citrulli AAC00-1)

8e-65

405) Clole_2457
( YP_004309361.1 )

FliI/YscN family ATPase

NC_015275
(Clostridium lentocellum DSM 5427)

8e-65

406) Thimo_0273
( YP_007242773.1 )

flagellar protein export ATPase FliI

NC_019940
(Thioflavicoccus mobilis 8321)

1e-64

407) L083_7699
( YP_007955689.1 )

FliI/YscN family ATPase

NC_021191
(Actinoplanes sp. N902-109)

1e-64

408) Desaci_3824
( YP_006468037.1 )

type III secretion system ATPase, FliI/YscN

NC_018068
(Desulfosporosinus acidiphilus SJ4)

1e-64

409) fliI
( YP_124039.1 )

flagellum-specific ATP synthase FliI

NC_006368
(Legionella pneumophila Paris)

1e-64

410) RO1_09360
( YP_007777386.1 )

type III secretion system ATPase, FliI/YscN

NC_021012
(Roseburia intestinalis XB6B4)

1e-64

411) Dd586_1886
( YP_003333450.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_013592
(Dickeya dadantii Ech586)

2e-64

412) yscN
( YP_006397500.1 )

ATP synthase YscN

NC_018000
(Sinorhizobium fredii USDA 257)

2e-64

413) Tgr7_1966
( YP_002514034.1 )

flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN

NC_011901
(Thioalkalivibrio sulfidophilus HL-EbGR7)

2e-64

414) CP0039
( NP_444591.1 )

type III secretion system ATPase

NC_002179
(Chlamydophila pneumoniae AR39)

3e-64

415) yscN
( NP_224903.1 )

type III secretion system ATPase

NC_000922
(Chlamydophila pneumoniae CWL029)

3e-64

416) yscN
( NP_300763.1 )

type III secretion system ATPase

NC_002491
(Chlamydophila pneumoniae J138)

3e-64

417) CPK_ORF00111
( YP_005661630.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_017285
(Chlamydophila pneumoniae LPCoLN)

3e-64

418) yopN
( NP_877006.1 )

type III secretion system ATPase

NC_005043
(Chlamydophila pneumoniae TW-183)

3e-64

419) rhcN
( YP_006575329.1 )

ATPase RhcN for type III secretion

NC_018294
(Sinorhizobium fredii HH103)

3e-64

420) Desdi_2869
( YP_007221677.1 )

type III secretion system ATPase, FliI/YscN

NC_019903
(Desulfitobacterium dichloroeliminans LMG P-21439)

3e-64

421) Gura_4210
( YP_001232926.1 )

flagellar protein export ATPase FliI

NC_009483
(Geobacter uraniireducens Rf4)

3e-64

422) fliI
( NP_243321.1 )

flagellum-specific ATP synthase

NC_002570
(Bacillus halodurans C-125)

3e-64

423) Tlet_1901
( YP_001471519.1 )

flagellar protein export ATPase FliI

NC_009828
(Thermotoga lettingae TMO)

3e-64

424) fliI
( YP_003619048.1 )

flagellum-specific ATP synthase

NC_014125
(Legionella pneumophila 2300/99 Alcoy)

4e-64

425) lp12_1695
( YP_005186056.1 )

nucleotide binding protein FliI

NC_016811
(Legionella pneumophila ATCC 43290)

4e-64

426) fliI
( YP_001250508.1 )

flagellum-specific ATP synthase FliI

NC_009494
(Legionella pneumophila Corby)

4e-64

427) LPE509_01433
( YP_007567976.1 )

Flagellum-specific ATP synthase FliI

NC_020521
(Legionella pneumophila Philadelphia 1)

4e-64

428) fliI
( YP_095783.1 )

flagellum-specific ATP synthase FliI

NC_002942
(Legionella pneumophila Philadelphia 1)

4e-64

429) fliL
( YP_008063443.1 )

flagellum-specific ATP synthase FliI

NC_021350
(Legionella pneumophila Thunder Bay)

4e-64

430) SARI_01567
( YP_001570603.1 )

type III secretion system ATPase

NC_010067
(Salmonella enterica RSK2980)

4e-64

431) ssaN
( YP_002226670.1 )

type III secretion system ATPase

NC_011274
(Salmonella enterica 287/91)

4e-64

432) I137_05680
( YP_008380646.1 )

type III secretion system ATPase

NC_021984
(Salmonella enterica S06004)

6e-64

433) fliI
( YP_006509021.1 )

flagellum-specific ATP synthase

NC_018140
(Legionella pneumophila HL06041035)

6e-64

434) fliI
( YP_001188309.1 )

flagellum-specific ATP synthase

NC_009439
(Pseudomonas mendocina ymp)

6e-64

435) ssaN
( YP_216423.1 )

type III secretion system ATPase

NC_006905
(Salmonella enterica SC-B67)

7e-64

436) fliI
( YP_127059.1 )

flagellum-specific ATP synthase FliI

NC_006369
(Legionella pneumophila Lens)

7e-64

437) fliI
( YP_006722060.1 )

flagellum-specific ATPase FliI

NC_007517
(Geobacter metallireducens GS-15)

7e-64

438) Acel_0844
( YP_872603.1 )

flagellar protein export ATPase FliI

NC_008578
(Acidothermus cellulolyticus 11B)

8e-64

439) fliI
( YP_008443737.1 )

ATP synthase

NC_022110
(Chlamydia trachomatis J/27-97)

8e-64

440) ssaN
( YP_008480902.1 )

putative type III secretion ATP synthase

NC_022221
(Salmonella enterica CDC1983-67)

1e-63

441) SeD_A1928
( YP_002215717.1 )

type III secretion system ATPase

NC_011205
(Salmonella enterica CT_02021853)

1e-63

442) ssaN
( YP_002243730.1 )

type III secretion system ATPase

NC_011294
(Salmonella enterica P125109)

1e-63

443) ssaN
( YP_005212440.1 )

putative type III secretion ATP synthase

NC_016831
(Salmonella enterica RKS5078)

1e-63

444) YE105_C0333
( YP_004296534.1 )

Secretion system apparatus ATP synthase ssaN

NC_015224
(Yersinia enterocolitica 105.5R(r))

1e-63

445) Y11_35401
( YP_006007039.1 )

type III secretion cytoplasmic ATP synthase

NC_017564
(Yersinia enterocolitica Y11)

1e-63

446) CAP2UW1_3803
( YP_003168982.1 )

flagellar protein export ATPase FliI

NC_013194
(Candidatus Accumulibacter phosphatis UW-1)

1e-63

447) sctN
( YP_001654129.1 )

type III secretion system ATPase

NC_010287
(Chlamydia trachomatis 434/Bu)

1e-63

448) sctN
( YP_005811723.1 )

SctN

NC_017434
(Chlamydia trachomatis D-EC)

1e-63

449) sctN
( YP_005812601.1 )

SctN

NC_017436
(Chlamydia trachomatis D-LC)

1e-63

450) fliI
( YP_008468118.1 )

ATP synthase

NC_022119
(Chlamydia trachomatis D/13-96)

1e-63

451) fliI
( YP_008442819.1 )

ATP synthase

NC_022109
(Chlamydia trachomatis D/14-96)

1e-63

452) SOTOND1_00711
( YP_007733311.1 )

type III secretion system ATPase

NC_020967
(Chlamydia trachomatis D/SotonD1)

1e-63

453) SOTOND5_00709
( YP_007727803.1 )

type III secretion system ATPase

NC_020943
(Chlamydia trachomatis D/SotonD5)

1e-63

454) SOTOND6_00709
( YP_007734203.1 )

type III secretion system ATPase

NC_020968
(Chlamydia trachomatis D/SotonD6)

1e-63

455) yscN
( NP_220188.1 )

type III secretion system ATPase

NC_000117
(Chlamydia trachomatis D/UW-3/CX)

1e-63

456) E11023_03530
( YP_005809898.1 )

type III secretion system ATPase

NC_017431
(Chlamydia trachomatis E/11023)

1e-63

457) fliI
( YP_008441900.1 )

ATP synthase

NC_022108
(Chlamydia trachomatis E/12-94)

1e-63

458) E150_03560
( YP_005814490.1 )

type III secretion system ATPase

NC_017439
(Chlamydia trachomatis E/150)

1e-63

459) BOUR_00713
( YP_007736885.1 )

type III secretion system ATPase

NC_020971
(Chlamydia trachomatis E/Bour)

1e-63

460) SOTONE4_00708
( YP_007735093.1 )

type III secretion system ATPase

NC_020969
(Chlamydia trachomatis E/SotonE4)

1e-63

461) SOTONE8_00714
( YP_007726911.1 )

type III secretion system ATPase

NC_020942
(Chlamydia trachomatis E/SotonE8)

1e-63

462) sctN
( YP_006361481.1 )

ATP synthase

NC_017952
(Chlamydia trachomatis E/SW3)

1e-63

463) fliI
( YP_008466259.1 )

ATP synthase

NC_022117
(Chlamydia trachomatis F/1-93)

1e-63

464) fliI
( YP_008440980.1 )

ATP synthase

NC_022107
(Chlamydia trachomatis F/11-96)

1e-63

465) fliI
( YP_008440053.1 )

ATP synthase

NC_022106
(Chlamydia trachomatis F/2-93)

1e-63

466) fliI
( YP_008467186.1 )

ATP synthase

NC_022118
(Chlamydia trachomatis F/6-94)

1e-63

467) SOTONF3_00708
( YP_007730624.1 )

type III secretion system ATPase

NC_020964
(Chlamydia trachomatis F/SotonF3)

1e-63

468) sctN
( YP_006360606.1 )

ATP synthase

NC_017951
(Chlamydia trachomatis F/SW4)

1e-63

469) sctN
( YP_006362356.1 )

ATP synthase

NC_017953
(Chlamydia trachomatis F/SW5)

1e-63

470) G11074_03530
( YP_005815413.1 )

type III secretion system ATPase

NC_017440
(Chlamydia trachomatis G/11074)

1e-63

471) G11222_03550
( YP_005808971.1 )

type III secretion system ATPase

NC_017430
(Chlamydia trachomatis G/11222)

1e-63

472) CTG9301_03540
( YP_005810822.1 )

type III secretion system ATPase

NC_017432
(Chlamydia trachomatis G/9301)

1e-63

473) G9768_03530
( YP_005808047.1 )

type III secretion system ATPase

NC_017429
(Chlamydia trachomatis G/9768)

1e-63

474) SOTONG1_00709
( YP_007726014.1 )

type III secretion system ATPase

NC_020941
(Chlamydia trachomatis G/SotonG1)

1e-63

475) SOTONIA1_00712
( YP_007735990.1 )

type III secretion system ATPase

NC_020970
(Chlamydia trachomatis Ia/SotonIa1)

1e-63

476) SOTONIA3_00712
( YP_007725123.1 )

type III secretion system ATPase

NC_020940
(Chlamydia trachomatis Ia/SotonIa3)

1e-63

477) fliI
( YP_008469045.1 )

ATP synthase

NC_022120
(Chlamydia trachomatis Ia20-97)

1e-63

478) sctN
( YP_007540369.1 )

ATP synthase (predicted TTSS protein)

NC_020511
(Chlamydia trachomatis IU824)

1e-63

479) sctN
( YP_007541245.1 )

ATP synthase (predicted TTSS protein)

NC_020512
(Chlamydia trachomatis IU888)

1e-63

480) fliI
( YP_008469969.1 )

ATP synthase

NC_022121
(Chlamydia trachomatis J/31-98)

1e-63

481) CTJTET1_03570
( YP_008349398.1 )

type III secretion system ATPase

NC_021892
(Chlamydia trachomatis J/6276tet1)

1e-63

482) SOTONK1_00709
( YP_007731517.1 )

type III secretion system ATPase

NC_020965
(Chlamydia trachomatis K/SotonK1)

1e-63

483) L1115_00704
( YP_007715308.1 )

type III secretion system ATPase

NC_020929
(Chlamydia trachomatis L1/115)

1e-63

484) L11322_00704
( YP_007737772.1 )

type III secretion system ATPase

NC_020972
(Chlamydia trachomatis L1/1322/p2)

1e-63

485) L1224_00704
( YP_007738662.1 )

type III secretion system ATPase

NC_020973
(Chlamydia trachomatis L1/224)

1e-63

486) L1440_00707
( YP_007722437.1 )

type III secretion system ATPase

NC_020937
(Chlamydia trachomatis L1/440/LN)

1e-63

487) L225667R_00706
( YP_007716199.1 )

type III secretion system ATPase

NC_020930
(Chlamydia trachomatis L2/25667R)

1e-63

488) CTLFINAL_00205
( YP_007851984.1 )

type III secretion system ATPase

NC_021052
(Chlamydia trachomatis L2/434/Bu(f))

1e-63

489) CTLINITIAL_00205
( YP_007851044.1 )

type III secretion system ATPase

NC_021050
(Chlamydia trachomatis L2/434/Bu(i))

1e-63

490) L2B795_00704
( YP_007723326.1 )

type III secretion system ATPase

NC_020938
(Chlamydia trachomatis L2b/795)

1e-63

491) L2B8200_00703
( YP_007729586.1 )

type III secretion system ATPase

NC_020945
(Chlamydia trachomatis L2b/8200/07)

1e-63

492) L2BAMS1_00703
( YP_007718868.1 )

type III secretion system ATPase

NC_020933
(Chlamydia trachomatis L2b/Ams1)

1e-63

493) L2BAMS2_00703
( YP_007719758.1 )

type III secretion system ATPase

NC_020934
(Chlamydia trachomatis L2b/Ams2)

1e-63

494) L2BAMS3_00703
( YP_007742219.1 )

type III secretion system ATPase

NC_020977
(Chlamydia trachomatis L2b/Ams3)

1e-63

495) L2BAMS4_00704
( YP_007743110.1 )

type III secretion system ATPase

NC_020978
(Chlamydia trachomatis L2b/Ams4)

1e-63

496) L2BAMS5_00704
( YP_007721544.1 )

type III secretion system ATPase

NC_020936
(Chlamydia trachomatis L2b/Ams5)

1e-63

497) L2BCAN1_00705
( YP_007720650.1 )

type III secretion system ATPase

NC_020935
(Chlamydia trachomatis L2b/Canada1)

1e-63

498) L2BCAN2_00704
( YP_007717977.1 )

type III secretion system ATPase

NC_020932
(Chlamydia trachomatis L2b/Canada2)

1e-63

499) L2BCV204_00703
( YP_007741329.1 )

type III secretion system ATPase

NC_020976
(Chlamydia trachomatis L2b/CV204)

1e-63

500) L2BLST_00703
( YP_007740439.1 )

type III secretion system ATPase

NC_020975
(Chlamydia trachomatis L2b/LST)

1e-63

501) L2BUCH2_00703
( YP_007717086.1 )

type III secretion system ATPase

NC_020931
(Chlamydia trachomatis L2b/UCH-2)

1e-63

502) L3404_00704
( YP_007739552.1 )

type III secretion system ATPase

NC_020974
(Chlamydia trachomatis L3/404/LN)

1e-63

503) CTRC342_03595
( YP_008347508.1 )

type III secretion system ATPase

NC_021890
(Chlamydia trachomatis RC-F(s)/342)

1e-63

504) CTRC852_03610
( YP_008345635.1 )

type III secretion system ATPase

NC_021888
(Chlamydia trachomatis RC-F(s)/852)

1e-63

505) CTRC69_03565
( YP_008351486.1 )

type III secretion system ATPase

NC_021895
(Chlamydia trachomatis RC-F/69)

1e-63

506) CTRC122_03570
( YP_008348453.1 )

type III secretion system ATPase

NC_021891
(Chlamydia trachomatis RC-J(s)/122)

1e-63

507) CTRC943_03525
( YP_008352410.1 )

type III secretion system ATPase

NC_021896
(Chlamydia trachomatis RC-J/943)

1e-63

508) CTRC953_03525
( YP_008346587.1 )

type III secretion system ATPase

NC_021889
(Chlamydia trachomatis RC-J/953)

1e-63

509) CTRC966_03535
( YP_008354256.1 )

type III secretion system ATPase

NC_021898
(Chlamydia trachomatis RC-J/966)

1e-63

510) CTRC971_03545
( YP_008355182.1 )

type III secretion system ATPase

NC_021899
(Chlamydia trachomatis RC-J/971)

1e-63

511) CTRC3_03575
( YP_008353333.1 )

type III secretion system ATPase

NC_021897
(Chlamydia trachomatis RC-L2(s)/3)

1e-63

512) CTRC46_03545
( YP_008344712.1 )

type III secretion system ATPase

NC_021887
(Chlamydia trachomatis RC-L2(s)/46)

1e-63

513) CTRC55_03545
( YP_008350356.1 )

type III secretion system ATPase

NC_021893
(Chlamydia trachomatis RC-L2/55)

1e-63

514) sctN
( YP_005816304.1 )

ATP synthase

NC_017441
(Chlamydia trachomatis Sweden2)

1e-63

515) sctN
( YP_001653141.1 )

type III secretion system ATPase

NC_010280
(Chlamydia trachomatis UCH-1)

1e-63

516) Psest_1722
( YP_007239901.1 )

flagellar protein export ATPase FliI

NC_019936
(Pseudomonas stutzeri RCH2)

1e-63

517) Desor_4887
( YP_004972803.1 )

flagellar protein export ATPase FliI

NC_016584
(Desulfosporosinus orientis DSM 765)

8e-64

518) ssaN
( YP_002637872.1 )

type III secretion system ATPase

NC_012125
(Salmonella enterica RKS4594)

9e-64

519) ssaN
( NP_456113.1 )

putative type III secretion ATP synthase

NC_003198
(Salmonella enterica CT18)

2e-63

520) STBHUCCB_13730
( YP_005216931.1 )

secretion system apparatus ATP synthase ssaN

NC_016832
(Salmonella enterica P-stx-12)

2e-63

521) ssaN
( NP_805086.1 )

type III secretion system ATPase

NC_004631
(Salmonella enterica Ty2)

2e-63

522) TY21A_06520
( YP_007925608.1 )

type III secretion system ATPase

NC_021176
(Salmonella enterica Ty21a)

2e-63

523) B602_0041
( YP_006736936.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018623
(Chlamydia psittaci M56)

2e-63

524) BN356_0371
( YP_006973964.1 )

putative type III secretion or flagellar-type ATP synthase

NC_019391
(Chlamydia psittaci 01DC12)

2e-63

525) G5O_0045
( YP_005662731.1 )

type III secretion cytoplasmic ATPase SctN

NC_017287
(Chlamydia psittaci 6BC)

2e-63

526) AO9_00175
( YP_007437756.1 )

type III secretion system ATPase

NC_020248
(Chlamydia psittaci Mat116)

2e-63

527) B712_0041
( YP_006740139.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018626
(Chlamydia psittaci NJ1)

2e-63

528) Cpsi_0431
( YP_004064027.1 )

putative type III secretion or flagellar-type ATP synthase

NC_014796
(Chlamydia psittaci RD1)

2e-63

529) B600_0044
( YP_006734787.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018621
(Chlamydia psittaci VS225)

2e-63

530) A363_00718
( YP_007732418.1 )

type III secretion system ATPase

NC_020966
(Chlamydia trachomatis A/363)

2e-63

531) A5291_00717
( YP_007724229.1 )

type III secretion system ATPase

NC_020939
(Chlamydia trachomatis A/5291)

2e-63

532) A7249_00716
( YP_007728701.1 )

type III secretion system ATPase

NC_020944
(Chlamydia trachomatis A/7249)

2e-63

533) sctN
( YP_328495.1 )

type III secretion system ATPase

NC_007429
(Chlamydia trachomatis A/HAR-13)

2e-63

534) sctN
( YP_005156505.1 )

ATP synthase

NC_016798
(Chlamydia trachomatis A2497)

2e-63

535) CTO_0726
( YP_005813553.1 )

SctN

NC_017437
(Chlamydia trachomatis A2497)

2e-63

536) sctN
( YP_002889174.1 )

type III secretion system ATPase

NC_012687
(Chlamydia trachomatis B/TZ1A828/OT)

2e-63

537) sctN
( YP_002888293.1 )

type III secretion system ATPase

NC_012686
(Chlamydia trachomatis Jali20)

2e-63

538) fliI
( YP_006505749.1 )

flagellum-specific ATP synthase

NC_018139
(Legionella pneumophila Lorraine)

2e-63

539) fliI
( YP_007657192.1 )

flagellum-specific ATP synthase

NC_020829
(Pseudomonas denitrificans ATCC 13867)

2e-63

540) sctN
( NP_828909.1 )

type III secretion system ATPase

NC_003361
(Chlamydophila caviae GPIC)

3e-63

541) fliI
( YP_005939318.1 )

flagellum-specific ATP synthase

NC_017532
(Pseudomonas stutzeri DSM 4166)

3e-63

542) hrcN
( YP_003883242.1 )

type III secretory pathway, ATPase HrcN

NC_014500
(Dickeya dadantii 3937)

4e-63

543) fliI1
( YP_515887.1 )

type III secretion system ATPase

NC_007899
(Chlamydophila felis Fe/C-56)

4e-63

544) LILAB_19900
( YP_004666960.1 )

FliI/YscN family ATPase

NC_015711
(Myxococcus fulvus HW-1)

4e-63

545) fliI
( YP_006458394.1 )

flagellum-specific ATP synthase

NC_018028
(Pseudomonas stutzeri CCUG 29243)

4e-63

546) Alvin_2939
( YP_003444873.1 )

flagellar protein export ATPase FliI

NC_013851
(Allochromatium vinosum DSM 180)

5e-63

547) CTL2C_679
( YP_004716893.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_015744
(Chlamydia trachomatis L2c)

5e-63

548) CAB036
( YP_219468.1 )

type III secretion system ATPase

NC_004552
(Chlamydophila abortus S26/3)

5e-63

549) Spith_0938
( YP_006044929.1 )

FliI/YscN family ATPase

NC_017583
(Spirochaeta thermophila DSM 6578)

5e-63

550) ACPL_7909
( YP_006270855.1 )

flagellum-specific ATP synthase

NC_017803
(Actinoplanes sp. SE50/110)

6e-63

551) EUBELI_00811
( YP_002930266.1 )

Na+-transporting two-sector ATPase

NC_012778
(Eubacterium eligens ATCC 27750)

6e-63

552) fliI
( YP_001173079.1 )

flagellum-specific ATP synthase

NC_009434
(Pseudomonas stutzeri A1501)

6e-63

553) fliI
( YP_006364975.1 )

flagellum-specific ATP synthase

NC_017955
(Modestobacter marinus BC501)

1e-62

554) fliI
( YP_001349621.1 )

flagellum-specific ATP synthase

NC_009656
(Pseudomonas aeruginosa PA7)

1e-62

555) TK90_1161
( YP_003460406.1 )

flagellar protein export ATPase FliI

NC_013889
(Thioalkalivibrio sp. K90mix)

1e-62

556) fliI
( YP_005093174.1 )

flagellum-specific ATP synthase

NC_016745
(Oceanimonas sp. GK1)

1e-62

557) CPS0A_0042
( YP_005663740.1 )

type III secretion system ATPase

NC_017289
(Chlamydia psittaci 01DC11)

7e-63

558) CPS0B_0042
( YP_005666666.1 )

type III secretion system ATPase

NC_017292
(Chlamydia psittaci 02DC15)

7e-63

559) CPS0D_0040
( YP_005664715.1 )

type III secretion system ATPase

NC_017290
(Chlamydia psittaci 08DC60)

7e-63

560) CPSIT_0040
( YP_004421896.1 )

type III secretion system ATPase

NC_015470
(Chlamydia psittaci 6BC)

7e-63

561) B595_0044
( YP_006732626.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018619
(Chlamydia psittaci 84/55)

7e-63

562) CPS0C_0041
( YP_005665688.1 )

type III secretion system ATPase

NC_017291
(Chlamydia psittaci C19/98)

7e-63

563) B711_0045
( YP_006739027.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018625
(Chlamydia psittaci CP3)

7e-63

564) B598_0043
( YP_006733744.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018620
(Chlamydia psittaci GR9)

7e-63

565) B599_0043
( YP_006741184.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018627
(Chlamydia psittaci MN)

7e-63

566) B603_0043
( YP_006737979.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018624
(Chlamydia psittaci WC)

7e-63

567) B601_0041
( YP_006735891.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_018622
(Chlamydia psittaci WS/RT/E30)

7e-63

568) fliI
( NP_791784.1 )

flagellum-specific ATP synthase FliI

NC_004578
(Pseudomonas syringae DC3000)

7e-63

569) fliI
( YP_003797929.1 )

ATPase FliI

NC_014355
(Candidatus Nitrospira defluvii )

7e-63

570) STHERM_c09130
( YP_003874133.1 )

hypothetical protein

NC_014484
(Spirochaeta thermophila DSM 6192)

7e-63

571) fliI
( YP_003775464.1 )

flagellum-specific ATP synthase

NC_014323
(Herbaspirillum seropedicae SmR1)

8e-63

572) Q7A_2368
( YP_006296813.1 )

flagellum-specific ATP synthase FliI

NC_017857
(Methylophaga sp. JAM1)

8e-63

573) Dsui_1753
( YP_005027979.1 )

flagellar protein export ATPase FliI

NC_016616
(Dechlorosoma suillum PS)

9e-63

574) fliI
( YP_587392.1 )

flagellum-specific ATP synthase

NC_007974
(Cupriavidus metallidurans CH34)

9e-63

575) Btus_1497
( YP_003589354.1 )

flagellar protein export ATPase FliI

NC_014098
(Kyrpidia tusciae DSM 2912)

9e-63

576) fliI
( YP_236524.1 )

flagellum-specific ATP synthase

NC_007005
(Pseudomonas syringae B728a)

1e-62

577) Ssed_0074
( YP_001471815.1 )

FliI/YscN family ATPase

NC_009831
(Shewanella sediminis HAW-EB3)

1e-62

578) MDS_1852
( YP_004379635.1 )

flagellum-specific ATP synthase

NC_015410
(Pseudomonas mendocina NK-01)

1e-62

579) Dd1591_1889
( YP_003004218.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_012912
(Dickeya zeae Ech1591)

2e-62

580) fliI
( YP_275538.1 )

flagellum-specific ATP synthase

NC_005773
(Pseudomonas syringae 1448A)

2e-62

581) Nmul_A1348
( YP_412043.1 )

ATPase FliI/YscN

NC_007614
(Nitrosospira multiformis ATCC 25196)

4e-62

582) fliI
( YP_004872452.1 )

flagellum-specific ATP synthase

NC_016041
(Glaciecola nitratireducens FR1064)

4e-62

583) MXAN_2442
( YP_630662.1 )

FliI/YscN family ATPase

NC_008095
(Myxococcus xanthus DK 1622)

4e-62

584) fliI
( YP_934222.1 )

ATP synthase

NC_008702
(Azoarcus sp. BH72)

5e-62

585) fliI
( YP_005467365.1 )

putative flagellum-specific ATP synthase

NC_017093
(Actinoplanes missouriensis 431)

6e-62

586) DaAHT2_1185
( YP_003690502.1 )

flagellar protein export ATPase FliI

NC_014216
(Desulfurivibrio alkaliphilus AHT2)

6e-62

587) fliI
( YP_007998971.1 )

flagellum-specific ATP synthase FliI

NC_021237
(Pseudomonas fluorescens CHA0)

7e-62

588) fliI
( YP_258767.1 )

flagellum-specific ATP synthase

NC_004129
(Pseudomonas protegens Pf-5)

7e-62

589) fliI
( YP_006523598.1 )

flagellum-specific ATP synthase

NC_018177
(Pseudomonas stutzeri DSM 10701)

7e-62

590) Psefu_1925
( YP_004473992.1 )

flagellar protein export ATPase FliI

NC_015556
(Pseudomonas fulva 12-X)

1e-61

591) Tmz1t_2903
( YP_002889879.1 )

ATPase, FliI/YscN family

NC_011662
(Thauera sp. MZ1T)

1e-61

592) fliI
( YP_192090.1 )

flagellum-specific ATP synthase

NC_006677
(Gluconobacter oxydans 621H)

1e-61

593) S58_72220
( YP_007516773.1 )

type III secretion system ATPase

NC_020453
(Bradyrhizobium oligotrophicum S58)

1e-61

594) fliI
( YP_007398180.1 )

flagellum-specific ATP synthase

NC_020209
(Pseudomonas poae RE*1-1-14)

1e-61

595) Daci_0641
( YP_001561672.1 )

flagellar protein export ATPase FliI

NC_010002
(Delftia acidovorans SPH-1)

2e-61

596) DelCs14_0579
( YP_004485973.1 )

flagellar protein export ATPase FliI

NC_015563
(Delftia sp. Cs1-4)

2e-61

597) fliI
( YP_347271.1 )

flagellum-specific ATP synthase

NC_007492
(Pseudomonas fluorescens Pf0-1)

2e-61

598) fliI
( YP_002873969.1 )

flagellum-specific ATP synthase

NC_012660
(Pseudomonas fluorescens SBW25)

2e-61

599) Mfla_1975
( YP_546083.1 )

ATPase FliI/YscN

NC_007947
(Methylobacillus flagellatus KT)

3e-61

600) Jden_2024
( YP_003161965.1 )

FliI/YscN family ATPase

NC_013174
(Jonesia denitrificans DSM 20603)

3e-61

601) fliI
( YP_007710785.1 )

flagellum-specific ATP synthase

NC_020912
(Pseudomonas aeruginosa B136-33)

3e-61

602) fliI
( YP_006484005.1 )

flagellum-specific ATP synthase

NC_018080
(Pseudomonas aeruginosa DK2)

3e-61

603) fliI
( YP_002441801.1 )

flagellum-specific ATP synthase

NC_011770
(Pseudomonas aeruginosa LESB58)

3e-61

604) fliI
( YP_005976513.1 )

flagellum-specific ATP synthase

NC_017548
(Pseudomonas aeruginosa M18)

3e-61

605) fliI
( YP_005980215.1 )

flagellum-specific ATP synthase

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

3e-61

606) fliI
( NP_249795.1 )

flagellum-specific ATP synthase

NC_002516
(Pseudomonas aeruginosa PAO1)

3e-61

607) fliI
( YP_008131651.1 )

ATP synthase

NC_021577
(Pseudomonas aeruginosa RP73)

3e-61

608) fliI
( YP_792165.1 )

flagellum-specific ATP synthase

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

3e-61

609) Tbd_1603
( YP_315361.1 )

flagellar biosynthesis/type III secretory pathway ATPase FliI

NC_007404
(Thiobacillus denitrificans ATCC 25259)

3e-61

610) Slip_0956
( YP_003702300.1 )

flagellar protein export ATPase FliI

NC_014220
(Syntrophothermus lipocalidus DSM 12680)

3e-61

611) fliI
( YP_006325184.1 )

flagellum-specific ATP synthase FliI

NC_017911
(Pseudomonas fluorescens A506)

4e-61

612) Atc_1487
( YP_004748836.1 )

flagellum-specific ATP synthase FliI

NC_015850
(Acidithiobacillus caldus SM-1)

5e-61

613) JCM7686_1778
( YP_008404646.1 )

ATP synthase in type III secretion protein SctN

NC_022041
(Paracoccus aminophilus JCM 7686)

6e-61

614) fliI
( YP_005436520.1 )

flagellar biosynthesis ATPase FilI

NC_017075
(Rubrivivax gelatinosus IL144)

6e-61

615) Plim_3098
( YP_003631112.1 )

FliI/YscN family ATPase

NC_014148
(Planctomyces limnophilus DSM 3776)

7e-61

616) Krad_1653
( YP_001361403.1 )

FliI/YscN family ATPase

NC_009664
(Kineococcus radiotolerans SRS30216)

9e-61

617) hrcN
( YP_001906467.1 )

HrcN protein

NC_010694
(Erwinia tasmaniensis Et1/99)

1e-60

618) USDA257_p02820
( YP_006529154.1 )

putative ATP synthase y4yI

NC_018179
(Sinorhizobium fredii USDA 257)

1e-60

619) DvMF_2290
( YP_002436700.1 )

flagellar protein export ATPase FliI

NC_011769
(Desulfovibrio vulgaris Miyazaki F)

1e-60

620) fliI
( YP_446712.1 )

flagellar protein export ATPase FliI

NC_007677
(Salinibacter ruber DSM 13855)

1e-60

621) fliI
( YP_003572706.1 )

flagellum-specific ATP synthase

NC_014032
(Salinibacter ruber M8)

1e-60

622) SCD_n01230
( YP_008546091.1 )

flagellar protein export ATPase FliI

NC_022357
(Sulfuricella denitrificans skB26)

2e-60

623) Tlie_0077
( YP_004931920.1 )

type III secretion system ATPase, FliI/YscN

NC_016148
(Thermovirga lienii DSM 17291)

2e-60

624) fliI
( YP_008104547.1 )

flagellum-specific ATP synthase FliI

NC_021499
(Pseudomonas resinovorans NBRC 106553)

2e-60

625) Rpdx1_3888
( YP_004110181.1 )

FliI/YscN family ATPase

NC_014834
(Rhodopseudomonas palustris DX-1)

2e-60

626) lfiI
( YP_001140288.1 )

lateral flagellar FliI-like assembly ATPase

NC_009348
(Aeromonas salmonicida A449)

3e-60

627) Desgi_2227
( YP_007945332.1 )

flagellar protein export ATPase FliI

NC_021184
(Desulfotomaculum gibsoniae DSM 7213)

3e-60

628) fliI
( YP_487515.1 )

flagellum-specific ATP synthase

NC_007778
(Rhodopseudomonas palustris HaA2)

5e-60

629) H650_14860
( YP_008108772.1 )

hypothetical protein

NC_021500
(Enterobacter sp. R4-368)

7e-60

630) AnaeK_2267
( YP_002134623.1 )

FliI/YscN family ATPase

NC_011145
(Anaeromyxobacter sp. K)

7e-60

631) D781_3942
( YP_007346317.1 )

type III secretion apparatus H+-transporting two-sector ATPase

NC_020064
(Serratia marcescens FGI94)

7e-60

632) B932_0338
( YP_006982878.1 )

protein FliI

NC_019396
(Gluconobacter oxydans H24)

9e-60

633) fliI
( NP_946979.1 )

flagellum-specific ATP synthase

NC_005296
(Rhodopseudomonas palustris CGA009)

9e-60

634) fliI
( YP_001990824.1 )

flagellum-specific ATP synthase

NC_011004
(Rhodopseudomonas palustris TIE-1)

9e-60

635) fliI
( YP_008034701.1 )

flagellum-specific ATP synthase

NC_021286
(Idiomarina loihiensis GSL 199)

1e-59

636) fliI
( YP_155586.1 )

flagellum-specific ATP synthase

NC_006512
(Idiomarina loihiensis L2TR)

1e-59

637) hrcN
( YP_005804087.1 )

ATP synthase in type III secretion system

NC_017390
(Erwinia pyrifoliae DSM 12163)

2e-59

638) hrcN
( YP_002650070.1 )

Hrp/hrc secretion/translocation pathway protein HrcN

NC_012214
(Erwinia pyrifoliae Ep1/96)

2e-59

639) hrcN
( YP_005818259.1 )

hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcN protein

NC_017445
(Erwinia sp. Ejp617)

2e-59

640) Alide_3854
( YP_004128449.1 )

flagellar protein export atpase flii

NC_014910
(Alicycliphilus denitrificans BC)

2e-59

641) Alide2_4200
( YP_004390031.1 )

flagellar protein export ATPase FliI

NC_015422
(Alicycliphilus denitrificans K601)

2e-59

642) Thena_0176
( YP_004436956.1 )

FliI/YscN family ATPase

NC_015499
(Thermodesulfobium narugense DSM 14796)

3e-59

643) fliI
( YP_436293.1 )

flagellum-specific ATP synthase

NC_007645
(Hahella chejuensis KCTC 2396)

4e-59

644) fliI
( YP_004751616.1 )

flagellum-specific ATP synthase

NC_015856
(Collimonas fungivorans Ter331)

4e-59

645) Thivi_0361
( YP_006412555.1 )

flagellar protein export ATPase FliI

NC_018012
(Thiocystis violascens DSM 198)

5e-59

646) fliI
( NP_768841.1 )

flagellum-specific ATP synthase

NC_004463
(Bradyrhizobium japonicum USDA 110)

5e-59

647) Tbd_1091
( YP_314849.1 )

flagella ATPase FliI

NC_007404
(Thiobacillus denitrificans ATCC 25259)

1e-58

648) rhcN
( NP_444161.1 )

ATPase RhcN for type III secretion

NC_000914
(Sinorhizobium fredii NGR234)

1e-58

649) Amir_2344
( YP_003100130.1 )

FliI/YscN family ATPase

NC_013093
(Actinosynnema mirum DSM 43827)

6e-59

650) Adeh_1596
( YP_464806.1 )

ATPase FliI/YscN

NC_007760
(Anaeromyxobacter dehalogenans 2CP-C)

8e-59

651) PSTAA_0179
( YP_005936842.1 )

FliI/YscN family ATPase

NC_017532
(Pseudomonas stutzeri DSM 4166)

1e-58

652) Psest_4169
( YP_007242269.1 )

FliI/YscN family ATPase

NC_019936
(Pseudomonas stutzeri RCH2)

1e-58

653) Noca_0756
( YP_921968.1 )

FliI/YscN family ATPase

NC_008699
(Nocardioides sp. JS614)

1e-58

654) fliI
( YP_855907.1 )

flagellum-specific ATP synthase

NC_008570
(Aeromonas hydrophila ATCC 7966)

1e-58

655) fliI
( YP_008042614.1 )

flagellum-specific ATP synthase

NC_021290
(Aeromonas hydrophila ML09-119)

1e-58

656) fliI
( YP_001141190.1 )

flagellum-specific ATP synthase

NC_009348
(Aeromonas salmonicida A449)

1e-58

657) Achl_2988
( YP_002489038.1 )

FliI/YscN family ATPase

NC_011886
(Arthrobacter chlorophenolicus A6)

1e-58

658) CtCNB1_0461
( YP_003276503.1 )

flagellar protein export ATPase FliI

NC_013446
(Comamonas testosteroni CNB-1)

1e-58

659) Sden_3656
( YP_564654.1 )

ATPase FliI/YscN

NC_007954
(Shewanella denitrificans OS217)

2e-58

660) Plabr_2460
( YP_004270083.1 )

type III secretion system ATPase, FliI/YscN

NC_015174
(Planctomyces brasiliensis DSM 5305)

2e-58

661) fliI
( YP_001758202.1 )

flagellum-specific ATP synthase

NC_010505
(Methylobacterium radiotolerans JCM 2831)

2e-58

662) B565_1102
( YP_004391754.1 )

flagellar protein export ATPase FliI

NC_015424
(Aeromonas veronii B565)

2e-58

663) HrcN
( YP_234305.1 )

type III secretion cytoplasmic ATPase HrcN

NC_007005
(Pseudomonas syringae B728a)

3e-58

664) fliI
( NP_908297.1 )

flagellum-specific ATP synthase

NC_005090
(Wolinella succinogenes DSM 1740)

4e-58

665) MYSTI_02833
( YP_007359833.1 )

FliI/YscN family ATPase

NC_020126
(Myxococcus stipitatus DSM 14675)

4e-58

666) fliI
( YP_070227.1 )

flagellum-specific ATP synthase

NC_006155
(Yersinia pseudotuberculosis IP 32953)

6e-58

667) hrcN
( NP_791227.1 )

type III secretion cytoplasmic ATPase HrcN

NC_004578
(Pseudomonas syringae DC3000)

6e-58

668) fliI
( YP_002419630.1 )

flagellum-specific ATP synthase

NC_011757
(Methylobacterium chloromethanicum CM4)

7e-58

669) fliI
( YP_001872253.1 )

flagellum-specific ATP synthase

NC_010634
(Yersinia pseudotuberculosis PB1/+)

7e-58

670) fliI
( YP_005453125.1 )

flagellar protein export ATPase

NC_017082
(Bradyrhizobium sp. S23321)

7e-58

671) Dvul_2671
( YP_968110.1 )

flagellar protein export ATPase FliI

NC_008751
(Desulfovibrio vulgaris DP4)

8e-58

672) fliI
( YP_009534.1 )

flagellum-specific ATP synthase FliI

NC_002937
(Desulfovibrio vulgaris Hildenborough)

8e-58

673) Deval_0281
( YP_005701090.1 )

FliI/YscN family ATPase

NC_017310
(Desulfovibrio vulgaris RCH1)

8e-58

674) fliI
( YP_001923459.1 )

flagellum-specific ATP synthase

NC_010725
(Methylobacterium populi BJ001)

9e-58

675) fliI
( YP_002961796.1 )

flagellum-specific ATP synthase

NC_012808
(Methylobacterium extorquens AM1)

1e-57

676) fliI
( YP_003718680.1 )

H(+)-transporting two-sector ATPase

NC_014246
(Mobiluncus curtisii ATCC 43063)

1e-57

677) DND132_1089
( YP_005167106.1 )

FliI/YscN family ATPase

NC_016803
(Desulfovibrio desulfuricans ND132)

1e-57

678) fliI
( YP_006915418.1 )

flagellum-specific ATP synthase

NC_018868
(Simiduia agarivorans SA1)

1e-57

679) fliI
( YP_001401262.1 )

flagellum-specific ATP synthase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

1e-57

680) fliI
( YP_004846435.1 )

flagellar protein export ATPase FliI

NC_016002
(Pseudogulbenkiania sp. NH8B)

1e-57

681) hrcN
( YP_273549.1 )

type III secretion component protein HrcN

NC_005773
(Pseudomonas syringae 1448A)

1e-57

682) KKY_2417
( YP_004900175.1 )

flagellum-specific ATP synthase FliI

NC_016078
(Pelagibacterium halotolerans B2)

1e-57

683) Oter_0419
( YP_001817309.1 )

flagellar protein export ATPase FliI

NC_010571
(Opitutus terrae PB90-1)

9e-58

684) fliI
( YP_001923369.1 )

flagellum-specific ATP synthase

NC_010725
(Methylobacterium populi BJ001)

2e-57

685) PSJM300_00930
( YP_006522626.1 )

FliI/YscN family ATPase

NC_018177
(Pseudomonas stutzeri DSM 10701)

2e-57

686) fliI
( YP_001721124.1 )

flagellum-specific ATP synthase

NC_010465
(Yersinia pseudotuberculosis YPIII)

2e-57

687) fliI
( YP_001413446.1 )

flagellum-specific ATP synthase

NC_009719
(Parvibaculum lavamentivorans DS-1)

2e-57

688) fliI
( YP_003066601.1 )

flagellum-specific ATP synthase

NC_012988
(Methylobacterium extorquens DM4)

3e-57

689) fliI
( YP_001638299.1 )

flagellum-specific ATP synthase

NC_010172
(Methylobacterium extorquens PA1)

3e-57

690) fliI
( YP_662604.1 )

flagellum-specific ATP synthase

NC_008228
(Pseudoalteromonas atlantica T6c)

3e-57

691) fliI
( YP_003517010.1 )

flagellum-specific ATP synthase

NC_013949
(Helicobacter mustelae 12198)

5e-57

692) Glaag_1284
( YP_004433513.1 )

flagellar protein export ATPase FliI

NC_015497
(Glaciecola sp. 4H-3-7+YE-5)

6e-57

693) EcolC_3379
( YP_001726325.1 )

FliI/YscN family ATPase

NC_010468
(Escherichia coli ATCC 8739)

1e-56

694) lgiI
( YP_002411033.1 )

lateral flagellar export/assembly protein

NC_011751
(Escherichia coli UMN026)

1e-56

695) fliI
( YP_006167285.1 )

FliI/YscN family ATPase

NC_017663
(Escherichia coli P12b)

8e-57

696) lfiI
( YP_001742360.1 )

lateral flagellar export/assembly protein LfiI

NC_010498
(Escherichia coli SMS-3-5)

9e-57

697) Aave_4392
( YP_972706.1 )

flagellar protein export ATPase FliI

NC_008752
(Acidovorax citrulli AAC00-1)

2e-56

698) fliI
( NP_842096.1 )

flagellar ATP synthase

NC_004757
(Nitrosomonas europaea ATCC 19718)

2e-56

699) R2APBS1_2994
( YP_007591304.1 )

flagellar protein export ATPase FliI

NC_020541
(Rhodanobacter sp. 2APBS1)

2e-56

700) lfiI
( YP_006094590.1 )

lateral flagellar specific ATP synthase (FliI-like)

NC_017626
(Escherichia coli 042)

2e-56

701) C427_3666
( YP_007545122.1 )

flagellar protein export ATPase FliI

NC_020514
(Glaciecola psychrophila 170)

2e-56

702) Psefu_3037
( YP_004475095.1 )

FliI/YscN family ATPase

NC_015556
(Pseudomonas fulva 12-X)

2e-56

703) fliI
( YP_006370652.1 )

flagellum-specific ATP synthase

NC_017956
(Tistrella mobilis KA081020-065)

2e-56

704) Acav_4289
( YP_004236740.1 )

flagellar protein export ATPase FliI

NC_015138
(Acidovorax avenae ATCC 19860)

3e-56

705) fliI
( YP_003060598.1 )

flagellum-specific ATP synthase

NC_012982
(Hirschia baltica ATCC 59814)

3e-56

706) Pmen_0041
( YP_001185547.1 )

FliI/YscN family ATPase

NC_009439
(Pseudomonas mendocina ymp)

3e-56

707) A2cp1_2355
( YP_002492759.1 )

FliI/YscN family ATPase

NC_011891
(Anaeromyxobacter dehalogenans 2CP-1)

3e-56

708) fliI
( YP_006137318.1 )

Flagellar protein export ATPase

NC_017644
(Escherichia coli NA114)

3e-56

709) fliI
( YP_001673676.1 )

flagellum-specific ATP synthase

NC_010334
(Shewanella halifaxensis HAW-EB4)

6e-56

710) fliI
( YP_780078.1 )

flagellum-specific ATP synthase

NC_008435
(Rhodopseudomonas palustris BisA53)

8e-56

711) lfiI
( YP_003232804.1 )

putative lateral flagellum-specific ATP synthase

NC_013364
(Escherichia coli 11128)

8e-56

712) GU3_14055
( YP_005093314.1 )

lateral flagellar FliI-like assembly ATPase protein

NC_016745
(Oceanimonas sp. GK1)

2e-55

713) fliI
( YP_001501226.1 )

flagellum-specific ATP synthase

NC_009901
(Shewanella pealeana ATCC 700345)

3e-55

714) fliI
( YP_003468595.1 )

flagellum-specific ATP synthase

NC_013892
(Xenorhabdus bovienii SS-2004)

4e-55

715) fliI
( YP_003978810.1 )

flagellar protein export ATPase FliI

NC_014640
(Achromobacter xylosoxidans A8)

7e-55

716) hrcN
( YP_003539964.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

7e-55

717) hrcN
( YP_003529890.1 )

ATP synthase

NC_013961
(Erwinia amylovora CFBP1430)

8e-55

718) MDS_4744
( YP_004382527.1 )

FliI/YscN family ATPase

NC_015410
(Pseudomonas mendocina NK-01)

8e-55

719) NH44784_042951
( YP_008031360.1 )

Flagellum-specific ATP synthase FliI

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

2e-54

720) fliI
( YP_004074051.1 )

flagellum-specific ATP synthase

NC_014810
(Helicobacter felis ATCC 49179)

2e-54

721) Deba_0915
( YP_003806879.1 )

flagellar protein export ATPase FliI

NC_014365
(Desulfarculus baarsii DSM 2075)

2e-54

722) fliI
( YP_008171076.1 )

flagellum-specific ATP synthase

NC_021710
(Alteromonas macleodii Ionian Sea U4)

3e-54

723) fliI
( YP_008195485.1 )

flagellum-specific ATP synthase

NC_021717
(Alteromonas macleodii Ionian Sea U7)

3e-54

724) fliI
( YP_008175206.1 )

flagellum-specific ATP synthase

NC_021712
(Alteromonas macleodii Ionian Sea U8)

3e-54

725) fliI
( YP_006975934.1 )

flagellum-specific ATP synthase

NC_019393
(Alteromonas macleodii AltDE1)

3e-54

726) fliI
( YP_006747074.1 )

flagellum-specific ATP synthase

NC_018632
(Alteromonas macleodii ATCC 27126)

3e-54

727) fliI
( YP_006801977.1 )

flagellum-specific ATP synthase

NC_018679
(Alteromonas macleodii Balearic Sea AD45)

3e-54

728) fliI
( YP_004426323.1 )

ATP synthase

NC_011138
(Alteromonas macleodii Deep ecotype)

3e-54

729) fliI
( YP_008183042.1 )

flagellum-specific ATP synthase

NC_021714
(Alteromonas macleodii Ionian Sea UM4b)

3e-54

730) fliI
( YP_008178989.1 )

flagellum-specific ATP synthase

NC_021713
(Alteromonas macleodii Ionian Sea UM7)

3e-54

731) fliI
( YP_008191962.1 )

flagellum-specific ATP synthase

NC_021716
(Alteromonas macleodii English Channel 615)

4e-54

732) fliI
( YP_006798063.1 )

flagellum-specific ATP synthase

NC_018678
(Alteromonas macleodii English Channel 673)

4e-54

733) fliI
( YP_006824037.1 )

flagellum-specific ATP synthase

NC_018692
(Alteromonas macleodii Black Sea 11)

6e-54

734) fliI
( YP_003556184.1 )

flagellum-specific ATP synthase FliI

NC_014012
(Shewanella violacea DSS12)

6e-54

735) fliI1
( YP_002796349.1 )

FliI1

NC_012559
(Laribacter hongkongensis HLHK9)

7e-54

736) fliI
( YP_663960.1 )

flagellum-specific ATP synthase

NC_008229
(Helicobacter acinonychis Sheeba)

1e-53

737) Neut_0742
( YP_746977.1 )

flagellar protein export ATPase FliI

NC_008344
(Nitrosomonas eutropha C91)

1e-53

738) Pmen_4414
( YP_001189893.1 )

FliI/YscN family ATPase

NC_009439
(Pseudomonas mendocina ymp)

8e-54

739) fliI
( YP_001474795.1 )

flagellum-specific ATP synthase

NC_009831
(Shewanella sediminis HAW-EB3)

8e-54

740) fliI
( YP_749876.1 )

flagellum-specific ATP synthase

NC_008345
(Shewanella frigidimarina NCIMB 400)

8e-54

741) fliI1
( NP_902804.1 )

flagellum-specific ATP synthase

NC_005085
(Chromobacterium violaceum ATCC 12472)

2e-53

742) fliI
( YP_002419542.1 )

flagellum-specific ATP synthase

NC_011757
(Methylobacterium chloromethanicum CM4)

3e-53

743) fliI
( YP_003066362.1 )

flagellum-specific ATP synthase

NC_012988
(Methylobacterium extorquens DM4)

3e-53

744) fliI
( YP_001638165.1 )

flagellum-specific ATP synthase

NC_010172
(Methylobacterium extorquens PA1)

3e-53

745) fliI
( YP_007615673.1 )

flagellum-specific ATP synthase

NC_020561
(Sphingomonas sp. MM-1)

3e-53

746) fliI
( YP_002961725.1 )

flagellum-specific ATP synthase

NC_012808
(Methylobacterium extorquens AM1)

4e-53

747) fliI
( YP_005448716.1 )

flagellar protein export ATPase

NC_017082
(Bradyrhizobium sp. S23321)

5e-53

748) Rvan_2563
( YP_004012877.1 )

FliI/YscN family ATPase

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

1e-52

749) lfiI
( YP_005436805.1 )

flagellum-specific ATP synthase LfiI

NC_017075
(Rubrivivax gelatinosus IL144)

8e-53

750) fliI
( NP_773525.2 )

flagellum-specific ATP synthase

NC_004463
(Bradyrhizobium japonicum USDA 110)

3e-52

751) Swit_1290
( YP_001261793.1 )

FliI/YscN family ATPase

NC_009511
(Sphingomonas wittichii RW1)

5e-52

752) fliI
( YP_002753384.1 )

flagellar protein export ATPase FliI

NC_012483
(Acidobacterium capsulatum ATCC 51196)

1e-51

753) fliI
( YP_004848106.1 )

flagellar protein export ATPase FliI

NC_016002
(Pseudogulbenkiania sp. NH8B)

2e-51

754) fliI
( YP_004467975.1 )

flagellum-specific ATP synthase

NC_015554
(Alteromonas sp. SN2)

3e-51

755) fliI
( YP_004678126.1 )

flagellum-specific ATP synthase

NC_015717
(Hyphomicrobium sp. MC1)

3e-51

756) fliI
( NP_902666.1 )

flagellum-specific ATP synthase

NC_005085
(Chromobacterium violaceum ATCC 12472)

2e-49

757) fliI
( YP_005446227.1 )

flagellum-specific ATP synthase FliI

NC_017080
(Phycisphaera mikurensis NBRC 102666)

5e-49

758) fliI
( YP_003664049.1 )

flagellum-specific ATP synthase

NC_014171
(Bacillus thuringiensis BMB171)

6e-49

759) Afer_0140
( YP_003108782.1 )

ATPase, FliI/YscN family

NC_013124
(Acidimicrobium ferrooxidans DSM 10331)

8e-49

760) XC_2263
( YP_243338.1 )

flagellar protein

NC_007086
(Xanthomonas campestris 8004)

1e-48

761) fliI
( NP_637288.1 )

flagellar protein

NC_003902
(Xanthomonas campestris ATCC 33913)

1e-48

762) Zmob_1156
( YP_005621437.1 )

FliI/YscN family ATPase

NC_017262
(Zymomonas mobilis ATCC 10988)

1e-48

763) Za10_0626
( YP_003225758.1 )

FliI/YscN family ATPase

NC_013355
(Zymomonas mobilis NCIMB 11163)

1e-48

764) ZMO0637
( YP_162372.2 )

ATPase, FliI/YscN family

NC_006526
(Zymomonas mobilis ZM4)

1e-48

765) fliI
( YP_006926322.1 )

flagellum-specific ATP synthase FliI

NC_018877
(Bacillus thuringiensis Bt407)

1e-48

766) fliI
( YP_005571550.1 )

flagellum-specific ATP synthase

NC_017208
(Bacillus thuringiensis CT-43)

1e-48

767) fliI
( YP_006603985.1 )

flagellum-specific ATP synthase

NC_018500
(Bacillus thuringiensis HD-771)

1e-48

768) H175_ch1597
( YP_007478058.1 )

Flagellum-specific ATP synthase FliI

NC_020376
(Bacillus thuringiensis IS5056)

1e-48

769) XCR_2191
( YP_005637194.1 )

flagellum-specific ATP synthase

NC_017271
(Xanthomonas campestris 756C)

2e-48

770) xccb100_2220
( YP_001903624.1 )

flagellum-specific ATP synthase

NC_010688
(Xanthomonas campestris B100)

2e-48

771) XOC_2349
( YP_005628651.1 )

flagellum-specific ATP synthase

NC_017267
(Xanthomonas oryzae BLS256)

2e-48

772) G432_05920
( YP_007615507.1 )

FliI/YscN family ATPase

NC_020561
(Sphingomonas sp. MM-1)

2e-46

773) fliI
( YP_003579652.1 )

flagellar protein export ATPase FliI

NC_014034
(Rhodobacter capsulatus SB 1003)

8e-46

774) ZZ6_0639
( YP_006518058.1 )

FliI/YscN family ATPase

NC_018145
(Zymomonas mobilis ATCC 29191)

1e-44

775) fliI
( YP_007599100.1 )

flagellum-specific ATP synthase

NC_020549
(Candidatus Liberibacter asiaticus gxpsy)

4e-44

776) fliI
( YP_003065097.1 )

flagellum-specific ATP synthase

NC_012985
(Candidatus Liberibacter asiaticus psy62)

4e-44

777) fliI
( YP_004833422.1 )

flagellum-specific ATP synthase FliI

NC_015976
(Sphingobium sp. SYK-6)

6e-44

778) PSE_2592
( YP_005081122.1 )

flagellar protein export ATPase FliI

NC_016642
(Pseudovibrio sp. FO-BEG1)

8e-43

779) A2cp1_2562
( YP_002492965.1 )

ATPase FliI/YscN

NC_011891
(Anaeromyxobacter dehalogenans 2CP-1)

6e-42

780) AnaeK_2466
( YP_002134820.1 )

FliI/YscN family ATPase

NC_011145
(Anaeromyxobacter sp. K)

7e-42

781) Adeh_1391
( YP_464602.1 )

ATPase FliI/YscN

NC_007760
(Anaeromyxobacter dehalogenans 2CP-C)

1e-40

• Sequence Alignments

1) SE451236_20565 in NC_021820


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

2) SeAg_B3016 in NC_011149


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

3) SEEB0189_05700 in NC_021844


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

4) SBOV29201 in NC_022241


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

5) invC in NC_006905


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

6) CFSAN002050_20770 in NC_021818


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

7) SeD_A3204 in NC_011205


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

8) invC in NC_011294


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

9) invC in NC_011274


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

10) invC in NC_022221


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

11) invC in NC_016831


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

12) SEEH1578_23280 in NC_021810


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

13) SU5_03375 in NC_017623


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

14) CFSAN002069_17800 in NC_021812


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

15) SeHA_C3084 in NC_011083


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

16) CFSAN001992_19055 in NC_020307


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

17) SNSL254_A3099 in NC_011080


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

18) SN31241_39860 in NC_021902


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

19) SPAB_03597 in NC_010102


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

20) spaI in NC_012125


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

21) I137_13780 in NC_021984


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

22) SeSA_A3047 in NC_011094


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

23) spaI in NC_003198


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

24) invC in NC_016856


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

25) invC in NC_017046


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

26) STMMW_28561 in NC_016854


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

27) invC in NC_003197


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

28) invC in NC_016810


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

29) invC in NC_016857


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

30) STU288_14625 in NC_021151


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

31) invC in NC_016863


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

32) CFSAN001921_02605 in NC_021814


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

33) STBHUCCB_29400 in NC_016832


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

34) TY21A_14125 in NC_021176


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

35) spaI in NC_004631


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2663),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

36) SSPA2566 in NC_011147


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2662),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/431 (99%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFAPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERF+PEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

37) spaI in NC_006511


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  704 bits (2662),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/431 (99%), Positives = 431/431 (100%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFAPEVAPISEERVID  120
            LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERF+PEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

38) STMDT12_C29430 in NC_016860


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  702 bits (2655),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/431 (99%), Positives = 430/431 (99%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNALGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120
            LSLIGNA GLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

39) spaI in NC_015761


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  699 bits (2642),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/431 (99%), Positives = 430/431 (99%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLTRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTSEVAPISEERVID  120
            LSLIGNAQGL+RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFT+EVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVHEPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGV+EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATGKGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGAT+ GSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEDEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDILKSVSRVFGQVTTATHA  360
            YTVLLESE+EADPMADEIRSILDGHLYLSRKLAGQGHYPAID+LKSVSRVFGQVTT+THA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

40) A464_2918 in NC_021870


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  699 bits (2642),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/431 (99%), Positives = 430/431 (99%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLTRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTSEVAPISEERVID  120
            LSLIGNAQGL+RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFT+EVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPSYASRVGVHEPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPPSYASRVGV+EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATGKGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGAT+ GSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEDEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDILKSVSRVFGQVTTATHA  360
            YTVLLESE+EADPMADEIRSILDGHLYLSRKLAGQGHYPAID+LKSVSRVFGQVTT+THA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420
            EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQN  431
            LSGMNAFADQN
Sbjct  421  LSGMNAFADQN  431

41) SARI_00079 in NC_010067


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  696 bits (2634),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/431 (98%), Positives = 429/431 (99%), Gaps = 0/431 (0%)

Query  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60
            MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNAQGLTRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTTEVAPISEERVID  120
            LSLIGNAQGL+RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFT EVAPISEERVID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  VAPPPYASRVGVHEPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180
            VAPP+YASRVGV+EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240
            FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATGDGSITAF  300
            GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGAT++GSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTATHA  360
            YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTT+THA
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  KQASSVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVTQYSSFDDT  420
             QAS+VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPV+QYSSFDDT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LSGMNAFADQD  431
            LSGMNAFADQ+
Sbjct  421  LSGMNAFADQN  431

42) invC in NC_005085


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  564 bits (2129),  Expect = 4e-162, Method: Compositional matrix adjust.
 Identities = 327/427 (77%), Positives = 384/427 (90%), Gaps = 0/427 (0%)

Query  1    MKPPRLLRRLANPQRLSGPILEAVLPGVAVGELCEIRRNWQEREVVARAQVVGFQHERAV  60
            MK PRLL+ LA PQ+++GPI+EA L +VA+GELCEIRR W++++VVARAQVVG+Q+ER+V
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNARGLSREAVLQPTGRALSAWVGEEALGAVLDPTGRVVERFSPAAAGGGEARDID  120
            LSLIGNA+GLSR+ VL PTGRALSAWVG   LGAVLDPTG++VERF+P  A  +E R ID
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  SDPPPYSRRVGVREPLATGVRAIDGLLTCGVGQRVGIFASAGCGKTMLMHMLIEQADADV  180
              PP+Y+ RVGVREPL TGVRAIDGLLTCGVGQR+GIFASAGCGKTMLMHMLIEQ++ADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  FVIGLIGERGREVTEFAEALRGSDKRDRCVLVFATSDFPSVDRCNAALLATTVAEYFRDQ  240
            FVIGLIGERGREVTEF + LR+S+K+++CVLVFATSDFPSVDRCNAA LATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GKKVVLFVDSMTRYARALRDVALAAGEPPARRGYPASVFDSLPRLLERPGATGAGSITAF  300
            GK+VVLF+DSMTRYARALRDVALA+GE PARRGYPASVFD+LPRLLERPGAT+ GSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  301  YTVLLESDDEPDPMADEIRSILDGHIYLSRKLAGQGHYPAIDVLKSASRVAGQVTDTGqq  360
            YTVLLES++E+DPMADEIRSILDGH+YLSRKLAGQGHYPAIDVLKS SRV GQVT   + 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  361  qaaaaVRGLLARLEELQVFIDLGEYRPGENADNDRAMSLRDPLRRWLRQRMDERAAYRDT  420
            + A+AVR L++RLEELQ+FIDLGEYRPGEN DNDRAM +RD+L+ WL Q + + +++ DT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  421  LESMDGF  427
            L +M++F
Sbjct  421  LSGMNAF  427

43) SG2088 in NC_007712


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  467 bits (1761),  Expect = 5e-133, Method: Compositional matrix adjust.
 Identities = 266/429 (63%), Positives = 357/429 (84%), Gaps = 1/429 (0%)

Query  3    RPLRMLRRQALPLRLSGPIIEAALPEVAVGEICEIRRHWRSREVIAHAQVLGFHHERTVL  62
            +  R+L+  A P +++GPIIEA L +VA+GE+CEIRR W+ ++V+A+AQV+G+++ERTVL
Sbjct  2    KTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVL  61

Query  63   SLIGAAHGLSREILLHPTGGPLRVEVGDALLGTIIQPSGRISERLAPPPVRCNREWRAID  122
            SLIG A+GLSR+++L PTG +L   VG ++LG++++P+G+I ER++P     + E R ID
Sbjct  62   SLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVID  120

Query  123  APAPDYRQRAGVRQPFITGIRAFDGLLTCGIGQRVGIFSSAGCGKTMLMHQLIAQSDAEV  182
             ++P Y  R GVR+P+ITG+RA+DGLLTCG+GQR+GIF+SAGCGKTMLMH LI Q++A+V
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  183  FVIGLVGERGREVTEFVETLRHSPRRHQCVLVYATSNYASLERCNAALVATTVAEYFRDQ  242
            FVIGL+GERGREVTEFV+ LR S ++++CVLV+ATS+++S++RCNAA +ATTVAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  243  GRRVVLFLDSLTRFARALRDVALAAGEAPARRGYPASVFDALPRVLERPGNSLSGSITAF  302
            G+RVVLF+DS+TR+ARALRDVALA+GE PARRGYPASVFD LPR+LERPG +  GSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  303  YTVLLEGDDEPDPIADEIRSILDGHIYLSRKLSAASHYPAIDILHSASRVAGQVTDARQQ  362
            YTVLLE+++E+DP+ADEIRSILDGH+YLSRKL++ +HYPAID+L S SRV GQVT + + 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  363  ALAGAMRGLLTRLEEMQTLIDLGEYRLGDNAENDRAHAQKQALWDFLRQDADQAEEFGQT  422
              A+A+R L+TRLEE+Q +IDLGEYR G+N +NDRA   +++L   L Q   Q   F++T
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  423  LRLMHAFDA  431
            L  M+AF  
Sbjct  421  LSGMNAFAD  429

44) EC042_3069 in NC_017626


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  463 bits (1745),  Expect = 1e-131, Method: Compositional matrix adjust.
 Identities = 268/413 (65%), Positives = 342/413 (83%), Gaps = 1/413 (0%)

Query  23   HSINGSLIEAELDDVSVGEVCEIYASWQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  82
            + I G++IEAEL DV++GE+CEI  +W+ ++ +ARAQVVG++  +T+L+LIG++ GL+R 
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  83   AVLKPTGEQLTIQINDAFLGSVLNASGQIMERFVPDTPGERGNLRLIDELPPSYKERRVI  142
             VL PTG  L+  +  + LG+VL+++G+I+ERF P+ +    + R+ID  PPSY  R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRVGV  132

Query  143  NTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGRE  202
              PL T +R IDG+LTCG+GQR+GIFASAGCGKT+LMHML+++TEADVFVIGLIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  203  VTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSMT  262
            VTE  + L+ S +  KCVLV+ATSDF+SVDRCNAA +ATTVAEYFRD+GKRVVLFIDSMT
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  263  RYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITAFYTVLLEGEDESD  322
            RYARALRD+ LA+GE PARRGYPASVFD+LPRLLERPG+T  GSITAFYTVLLE+E+E+D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  323  PLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKILTT  382
            P++DEIRSILDGH+YLSRKLAGQGHYPAIDVLKSVSRVFGQVT   H ++A+ VRK++T 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  383  LEELQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNEKMPMSETLKELE  435
            LEELQ+FIDLGEYR+G+N +ND AM+ R  L  WL Q+V +  +  +TL  ++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

45) eivC in NC_017646


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  463 bits (1746),  Expect = 8e-132, Method: Compositional matrix adjust.
 Identities = 267/413 (65%), Positives = 343/413 (84%), Gaps = 1/413 (0%)

Query  23   HSINGSLIEAELDDVSVGEVCEIYASWQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  82
            + I G++IEAEL DV++GE+CEI  +W+ ++ +ARAQVVG++  +T+L+LIG++ GL+R 
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  83   AVLKPTGEQLTIQISDAFLGSVLNASGQIMERFVPDTPGERGNLRLIDELPPSYQERRVI  142
             VL PTG  L+  ++ + LG+VL+++G+I+ERF P+ +    + R+ID  PPSY  R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRVGV  132

Query  143  NTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGRE  202
              PL T +R IDG+LTCG+GQR+GIFASAGCGKT+LMHML+++TEADVFVIGLIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  203  VTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSMT  262
            VTE  + L+ S +  KCVLV+ATSDF+SVDRCNAA +ATTVAEYFRD+GKRVVLFIDSMT
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  263  RYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITAFYTVLLEGEDESD  322
            RYARALRD+ LA+GE PARRGYPASVFD+LPRLLERPG+T  GSITAFYTVLLE+E+E+D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  323  PLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKILTT  382
            P++DEIRSILDGH+YLSRKLAGQGHYPAIDVLKSVSRVFGQVT   H ++A+ VRK++T 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  383  LEDLQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNEKMPMSETLKELE  435
            LE+LQ+FIDLGEYR+G+N +ND AM+ R  L  WL Q+V +  +  +TL  ++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

46) ECUMN_3201 in NC_011751


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  463 bits (1746),  Expect = 8e-132, Method: Compositional matrix adjust.
 Identities = 267/413 (65%), Positives = 343/413 (84%), Gaps = 1/413 (0%)

Query  23   HSINGSLIEAELDDVSVGEVCEIYASWQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  82
            + I G++IEAEL DV++GE+CEI  +W+ ++ +ARAQVVG++  +T+L+LIG++ GL+R 
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  83   AVLKPTGEQLTIQISDAFLGSVLNASGQIMERFVPDTPGERGNLRLIDELPPSYQERRVI  142
             VL PTG  L+  ++ + LG+VL+++G+I+ERF P+ +    + R+ID  PPSY  R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRVGV  132

Query  143  NTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGRE  202
              PL T +R IDG+LTCG+GQR+GIFASAGCGKT+LMHML+++TEADVFVIGLIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  203  VTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSMT  262
            VTE  + L+ S +  KCVLV+ATSDF+SVDRCNAA +ATTVAEYFRD+GKRVVLFIDSMT
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  263  RYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITAFYTVLLEGEDESD  322
            RYARALRD+ LA+GE PARRGYPASVFD+LPRLLERPG+T  GSITAFYTVLLE+E+E+D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  323  PLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKILTT  382
            P++DEIRSILDGH+YLSRKLAGQGHYPAIDVLKSVSRVFGQVT   H ++A+ VRK++T 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  383  LEDLQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNEKMPMSETLKELE  435
            LE+LQ+FIDLGEYR+G+N +ND AM+ R  L  WL Q+V +  +  +TL  ++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

47) ECH74115_4146 in NC_011353


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  458 bits (1727),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 265/413 (65%), Positives = 341/413 (83%), Gaps = 1/413 (0%)

Query  14   HSINGSLIEAELDDVSVGEVCEIYASRQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  73
            + I G++IEAEL DV++GE+CEI  +++ ++ +ARAQVVG++  +T+L+LIG++ GL+R 
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  74   AVLKPTGEQLTIQISDAFLGSVLNASGQIMERFVPDTPGDRGNLRLIDELPPSYQERRVI  133
             VL PTG  L+  ++ + LG+VL+++G+I+ERF P+ +    + R+ID  PPSY  R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRVGV  132

Query  134  NTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGRE  193
              PL T +R IDG+LTCG+GQR+GIFASAGCGKT+LMHML+++TEADVFVIGLIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  194  VTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSMT  253
            VTE  + L+ S +  KCVLV+ATSDF+SVDRCNAA +ATTVAEYFRD+GKRVVLFIDSMT
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  254  RYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITEFYTVLLEGEDESD  313
            RYARALRD+ LA+GE PARRGYPASVFD+LPRLLERPG+T  GSIT FYTVLLE+E+E+D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  314  PLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKNLTT  373
            P++DEIRSILDGH+YLSRKLAGQGHYPAIDVLKSVSRVFGQVT   H ++A+ VRK +T 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  374  LEDLQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNEKMPMSETLKELE  426
            LE+LQ+FIDLGEYR+G+N +ND AM+ R  L  WL Q+V +  +  +TL  ++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

48) Z4194 in NC_002655


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  458 bits (1727),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 265/413 (65%), Positives = 341/413 (83%), Gaps = 1/413 (0%)

Query  23   HSINGSLIEAELDDVSVGEVCEIYASRQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  82
            + I G++IEAEL DV++GE+CEI  +++ ++ +ARAQVVG++  +T+L+LIG++ GL+R 
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  83   AVLKPTGEQLTIQISDAFLGSVLNASGQIMERFVPDTPGDRGNLRLIDELPPSYQERRVI  142
             VL PTG  L+  ++ + LG+VL+++G+I+ERF P+ +    + R+ID  PPSY  R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRVGV  132

Query  143  NTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGRE  202
              PL T +R IDG+LTCG+GQR+GIFASAGCGKT+LMHML+++TEADVFVIGLIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  203  VTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSMT  262
            VTE  + L+ S +  KCVLV+ATSDF+SVDRCNAA +ATTVAEYFRD+GKRVVLFIDSMT
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  263  RYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITEFYTVLLEGEDESD  322
            RYARALRD+ LA+GE PARRGYPASVFD+LPRLLERPG+T  GSIT FYTVLLE+E+E+D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  323  PLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKNLTT  382
            P++DEIRSILDGH+YLSRKLAGQGHYPAIDVLKSVSRVFGQVT   H ++A+ VRK +T 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  383  LEDLQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNEKMPMSETLKELE  435
            LE+LQ+FIDLGEYR+G+N +ND AM+ R  L  WL Q+V +  +  +TL  ++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

49) ECs3730 in NC_002695


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  458 bits (1727),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 265/413 (65%), Positives = 341/413 (83%), Gaps = 1/413 (0%)

Query  23   HSINGSLIEAELDDVSVGEVCEIYASRQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  82
            + I G++IEAEL DV++GE+CEI  +++ ++ +ARAQVVG++  +T+L+LIG++ GL+R 
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  83   AVLKPTGEQLTIQISDAFLGSVLNASGQIMERFVPDTPGDRGNLRLIDELPPSYQERRVI  142
             VL PTG  L+  ++ + LG+VL+++G+I+ERF P+ +    + R+ID  PPSY  R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRVGV  132

Query  143  NTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGRE  202
              PL T +R IDG+LTCG+GQR+GIFASAGCGKT+LMHML+++TEADVFVIGLIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  203  VTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSMT  262
            VTE  + L+ S +  KCVLV+ATSDF+SVDRCNAA +ATTVAEYFRD+GKRVVLFIDSMT
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  263  RYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITEFYTVLLEGEDESD  322
            RYARALRD+ LA+GE PARRGYPASVFD+LPRLLERPG+T  GSIT FYTVLLE+E+E+D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  323  PLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKNLTT  382
            P++DEIRSILDGH+YLSRKLAGQGHYPAIDVLKSVSRVFGQVT   H ++A+ VRK +T 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  383  LEDLQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNEKMPMSETLKELE  435
            LE+LQ+FIDLGEYR+G+N +ND AM+ R  L  WL Q+V +  +  +TL  ++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

50) eivC in NC_013008


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  458 bits (1727),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 265/413 (65%), Positives = 341/413 (83%), Gaps = 1/413 (0%)

Query  23   HSINGSLIEAELDDVSVGEVCEIYASRQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  82
            + I G++IEAEL DV++GE+CEI  +++ ++ +ARAQVVG++  +T+L+LIG++ GL+R 
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  83   AVLKPTGEQLTIQISDAFLGSVLNASGQIMERFVPDTPGDRGNLRLIDELPPSYQERRVI  142
             VL PTG  L+  ++ + LG+VL+++G+I+ERF P+ +    + R+ID  PPSY  R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRVGV  132

Query  143  NTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGRE  202
              PL T +R IDG+LTCG+GQR+GIFASAGCGKT+LMHML+++TEADVFVIGLIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  203  VTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSMT  262
            VTE  + L+ S +  KCVLV+ATSDF+SVDRCNAA +ATTVAEYFRD+GKRVVLFIDSMT
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  263  RYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITEFYTVLLEGEDESD  322
            RYARALRD+ LA+GE PARRGYPASVFD+LPRLLERPG+T  GSIT FYTVLLE+E+E+D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  323  PLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKNLTT  382
            P++DEIRSILDGH+YLSRKLAGQGHYPAIDVLKSVSRVFGQVT   H ++A+ VRK +T 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  383  LEDLQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNEKMPMSETLKELE  435
            LE+LQ+FIDLGEYR+G+N +ND AM+ R  L  WL Q+V +  +  +TL  ++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

51) CDCO157_3483 in NC_017906


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  458 bits (1727),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 265/413 (65%), Positives = 341/413 (83%), Gaps = 1/413 (0%)

Query  23   HSINGSLIEAELDDVSVGEVCEIYASRQANERIARAQVVGFRNGKTLLNLIGSSVGLTRT  82
            + I G++IEAEL DV++GE+CEI  +++ ++ +ARAQVVG++  +T+L+LIG++ GL+R 
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  83   AVLKPTGEQLTIQISDAFLGSVLNASGQIMERFVPDTPGDRGNLRLIDELPPSYQERRVI  142
             VL PTG  L+  ++ + LG+VL+++G+I+ERF P+ +    + R+ID  PPSY  R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRVGV  132

Query  143  NTPLETRIRVIDGVLTCGIGQRVGIFASAGCGKTVLMHMLVNNTEADVFVIGLIGERGRE  202
              PL T +R IDG+LTCG+GQR+GIFASAGCGKT+LMHML+++TEADVFVIGLIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  203  VTECAESLKKSVNAAKCVLVYATSDFSSVDRCNAALMATTVAEYFRDRGKRVVLFIDSMT  262
            VTE  + L+ S +  KCVLV+ATSDF+SVDRCNAA +ATTVAEYFRD+GKRVVLFIDSMT
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  263  RYARALRDMKLAAGEPPARRGYPASVFDSLPRLLERPGPTLKGSITEFYTVLLEGEDESD  322
            RYARALRD+ LA+GE PARRGYPASVFD+LPRLLERPG+T  GSIT FYTVLLE+E+E+D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  323  PLGDEIRSILDGHIYLSRKLAGQGHYPAIDVLKSVSRVFGQVTDEKHRDNAARVRKNLTT  382
            P++DEIRSILDGH+YLSRKLAGQGHYPAIDVLKSVSRVFGQVT   H ++A+ VRK +T 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  383  LEDLQVFIDLGEYRAGQNAENDFAMNARPKLTNWLKQSVNEKMPMSETLKELE  435
            LE+LQ+FIDLGEYR+G+N +ND AM+ R  L  WL Q+V +  +  +TL  ++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

52) invC in NC_012751


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  454 bits (1711),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 266/431 (62%), Positives = 361/431 (84%), Gaps = 2/431 (0%)

Query  1    MHKLRLLRYKAHPLRLSGPIIEARLFGVKIGEICDIRSDCSESEVICRAQVLGFYNDRSV  60
            M   RLL+Y A P +++GPIIEA L +V IGE+C+IR +  + +V+ RAQV+G+  +R+V
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNARGLSRDVVIIPTGAALLVTIDDSLLGSVVDPSGKIVAHLSEPTEIMHNPSIRA  120
            LSLIGNA+GLSRDVV+ PTG AL   ++ S+LG+V+DP+GKIV +++   E+   +  R 
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFT--PEVAPISEERV  118

Query  121  IDSPPPSYLHRLSIRDPFITGVKAIDGLITCGVGQRMGIFAAAGCGKTSLMHMLIEQADA  180
            ID +PPSY  R+++R+P+ITGV+AIDGL+TCGVGQRMGIFA+AGCGKT LMHMLIEQ++A
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  181  DVFVIGLVGERGREVTEFTEVLSKSGRAQKCIVVYATSDFSSLDRCNAALLATTIAEYFR  240
            DVFVIGL+GERGREVTEF ++L  S + +KC++V+ATSDF+S+DRCNAA LATT+AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  241  DQGKKVVLFLDSITRYARALRDVALAAGEAPARRGYPASVFDSLPSILERPSNTKNGSIT  300
            DQGK+VVLF+DS+TRYARALRDVALA+GE PARRGYPASVFD+LP +LERP+ T +GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  301  AFYTILLesddepdpiseeiRSILDGHIYLSKKLAIKNHYPAIDVLHSISRVSSQICDTN  360
            AFYT+LLES++E+DP+++EIRSILDGH+YLS+KLA + HYPAIDVL S+SRV +Q+    
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  361  HLSMAGEFRNILAKIQELQMFVELGEYRQGENAENDRAIKKRPALLKWLQQSMNEHSSFE  420
            H   A+  R+++++++ELQ+F++LGEYR GEN +NDRA++ R +L  WL Q++ + SSF+
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  421  QTLQAMNELTQ  431
            +TL +MN +++
Sbjct  419  DTLSGMNAFAD  429

53) fliI in NC_021505


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  427 bits (1607),  Expect = 7e-121, Method: Compositional matrix adjust.
 Identities = 254/417 (61%), Positives = 342/417 (83%), Gaps = 0/417 (0%)

Query  15   AHPLRLNGPLLEAALHNVVIGEVCEVRSNWRHAAVSARAQVIGFSPDAVLLSLLGDARGL  74
            A P ++ GP++EA L++V IGE+CE+R  W++  V ARAQV+G+  +  +LSL+G+A+GL
Sbjct  11   AYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGL  70

Query  75   SRESLIVPTGALLSLHCSAAMLGSVIDPQGRIVERLAPGDAFDGRDCPVDAAPPAYNQRR  134
            SR+ ++ PTG  LS   + ++LG+V+DP G+IVER++P  A  + +  +D APP+Y  R 
Sbjct  71   SRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRV  130

Query  135  PVSQPMATGVRAIDGLLTCGIGQRIGIFAAAGSGKTSLMNMLIAHSEADVFVIGLIGERG  194
             V +P+ TGVRAIDGLLTCG+GQR+GIFA+AG GKT LM+MLI ++EADVFVIGLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  195  REVTEFVETLRHSDKCTRCVVVYATSDFSSIDRCNAALQATAIAEYFRDQGRQVVLMLDS  254
            REVTEFV+ LR S+K  +CV+V+ATSDF+S+DRCNAA  AT++AEYFRDQG++VVL +DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  255  MSryararrdlalaaGEAPARRGYPASVFDSLPRLLERPGVTANGSITAFYTVLTESDDE  314
            M+RYARA RD+ALA+GE PARRGYPASVFD+LPRLLERPG T++GSITAFYTVL ES++E
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  315  TDPIAEEIRSILDGHIYLSRKLAASGHFPAIDVLRSASRVAHQVTGADVQQLAASTRKVL  374
            +DP+A+EIRSILDGH+YLSRKLA+ GH+PAIDVL+S SRV  QVT +   + A++ RK++
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  375  ARLEALQVLLDLGEYRHGENAANDQAMACRDALMAWLCQDLKEGCAPQATLESLHGL  431
            +RLE LQ+++DLGEYR GEN  ND+AM  RD+L AWLCQ + +  + + TL +++++
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

54) spa47 in NC_007607


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  424 bits (1595),  Expect = 7e-120, Method: Compositional matrix adjust.
 Identities = 240/408 (59%), Positives = 329/408 (81%), Gaps = 1/408 (0%)

Query  1    MSYTKLLTQLSFPNKISGPILETSLSDVSIGEICNIQAGIESNEIVARAQVVGFHDEKTI  60
            M   +LL  L++P+KI+GPI+E+ L DV+IGE+C+I+ G + +++VARAQVVG++ E+T+
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNSRGLSRQTLIKPTAQFLHTQVGRGLLGAVVNPLGEVTDKFAVTDNSEILYRPVD  120
            LSLIGN++GLSR+ ++ PT++ L + VG ++LGAV++P G + ++F+    +    R +D
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  NAPPLYSERAAIEKPFLTGVKVIDSLLTCGEGQRMGIFASAGCGKTFLMNMLIEHSGADI  180
             APP Y+ R ++  P++TGV+ ID+LLTCG GQRMGIFASAGCGKT LM+MLIE++ AD+
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  YVIGLIGERGREVTETVDYLKNSEKKSRCVLVYATSDYSSVDRCNAAYIATAIAEFFRTE  240
            +VIGLIGERGREVTE VD L+ S+KK +CVLV+ATSD++SVDRCNAA +AT++AE+FR +
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GHKVALFIDSLTRYARALRDVALAAGESPARRGYPVSVFDSLPRLLERPGKLKAGGSITA  300
            G +V LFIDS+TRYARALRDVALA+GE PARRGYP SVFD+LPRLLERPG   + GSITA
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-TSEGSITA  299

Query  301  FYTVLLEDDDFADPLAEEVRSILDGHIYLSRNLAQKGQFPAIDSLKSISRVFTQVVDEKH  360
            FYTVLLE ++ ADP+A+E+RSILDGH+YLSR+LA +G++PAID LKS+SRVF QV    H
Sbjct  300  FYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTH  359

Query  361  RIMAAAFRELLSEIEELRTIIDFGEYKPGENASQDKIYNKISVVESFL  408
               A+A R L++ +EEL+ +ID+GEY+PGEN  +D+  +    + + L
Sbjct  360  AEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWL  407

55) spa47 in NC_017319


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  423 bits (1591),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 238/408 (59%), Positives = 329/408 (81%), Gaps = 1/408 (0%)

Query  1    MSYTKLLTQLSFPNRISGPILETSLSDVSIGEICNIQAGIESNEIVARAQVVGFHDEKTI  60
            M   +LL  L++P++I+GPI+E+ L DV+IGE+C+I+ G + +++VARAQVVG++ E+T+
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNSRGLSRQTLIKPTAQFLHTQVGRGLLGAVVNPLGEVTDKFAVTDNSEILYRPVD  120
            LSLIGN++GLSR+ ++ PT++ L + VG ++LGAV++P G + ++F+    +    R +D
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  NAPPLYSERAAIEKPFLTGIKVIDSLLTCGEGQRMGIFASAGCGKTFLMNMLIEHSGADI  180
             APP Y+ R ++  P++TG++ ID+LLTCG GQRMGIFASAGCGKT LM+MLIE++ AD+
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  YVIGLIGERGREVTETVDYLKNSEKKSRCVLVYATSDYSSVDRCNAAYIATAIAEFFRTE  240
            +VIGLIGERGREVTE VD L+ S+KK +CVLV+ATSD++SVDRCNAA +AT++AE+FR +
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GHKVALFIDSLTRYARALRDVALAAGESPARRGYPVSVFDSLPRLLERPGKLKAGGSITA  300
            G +V LFIDS+TRYARALRDVALA+GE PARRGYP SVFD+LPRLLERPG   + GSITA
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-TSEGSITA  299

Query  301  FYTVLLEDDDFADPLAEEVRSILDGHIYLSRNLAQKGQFPAIDSLKSISRVFTQVVDEKH  360
            FYTVLLE ++ ADP+A+E+RSILDGH+YLSR+LA +G++PAID LKS+SRVF QV    H
Sbjct  300  FYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTH  359

Query  361  RIMAAAFRELLSEIEELRTIIDFGEYKPGENASQDKIYNKISVVESFL  408
               A+A R L++ +EEL+ +ID+GEY+PGEN  +D+  +    + + L
Sbjct  360  AEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWL  407

56) spa47 in NC_004851


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  423 bits (1591),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 238/408 (59%), Positives = 329/408 (81%), Gaps = 1/408 (0%)

Query  1    MSYTKLLTQLSFPNRISGPILETSLSDVSIGEICNIQAGIESNEIVARAQVVGFHDEKTI  60
            M   +LL  L++P++I+GPI+E+ L DV+IGE+C+I+ G + +++VARAQVVG++ E+T+
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNSRGLSRQTLIKPTAQFLHTQVGRGLLGAVVNPLGEVTDKFAVTDNSEILYRPVD  120
            LSLIGN++GLSR+ ++ PT++ L + VG ++LGAV++P G + ++F+    +    R +D
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  NAPPLYSERAAIEKPFLTGIKVIDSLLTCGEGQRMGIFASAGCGKTFLMNMLIEHSGADI  180
             APP Y+ R ++  P++TG++ ID+LLTCG GQRMGIFASAGCGKT LM+MLIE++ AD+
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  YVIGLIGERGREVTETVDYLKNSEKKSRCVLVYATSDYSSVDRCNAAYIATAIAEFFRTE  240
            +VIGLIGERGREVTE VD L+ S+KK +CVLV+ATSD++SVDRCNAA +AT++AE+FR +
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GHKVALFIDSLTRYARALRDVALAAGESPARRGYPVSVFDSLPRLLERPGKLKAGGSITA  300
            G +V LFIDS+TRYARALRDVALA+GE PARRGYP SVFD+LPRLLERPG   + GSITA
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-TSEGSITA  299

Query  301  FYTVLLEDDDFADPLAEEVRSILDGHIYLSRNLAQKGQFPAIDSLKSISRVFTQVVDEKH  360
            FYTVLLE ++ ADP+A+E+RSILDGH+YLSR+LA +G++PAID LKS+SRVF QV    H
Sbjct  300  FYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTH  359

Query  361  RIMAAAFRELLSEIEELRTIIDFGEYKPGENASQDKIYNKISVVESFL  408
               A+A R L++ +EEL+ +ID+GEY+PGEN  +D+  +    + + L
Sbjct  360  AEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWL  407

57) spa47 in NC_007385


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  423 bits (1593),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 238/408 (59%), Positives = 330/408 (81%), Gaps = 1/408 (0%)

Query  1    MSYTKLLTQLSFPNRISGPILETSLSDVSIGEICNIQAGIESNEIVARAQVVGFHDEKTI  60
            M   +LL  L++P++I+GPI+E+ L DV+IGE+C+I+ G + +++VARAQVVG++ E+T+
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNSRGLSRQTLIKPTAQFLHTQVGRGLLGAVVNPLGEVTDKFAVTDNSEILYRPVD  120
            LSLIGN++GLSR+ ++ PT++ L + VG ++LGAV++P G + ++F+    +    R +D
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  NAPPLYSERAAIEKPFLTGIKVIDSLLTCGEGQRMGIFASAGCGKTFLMNMLIEHSGADI  180
             APP Y+ R ++  P++TG++ ID+LLTCG GQRMGIFASAGCGKT LM+MLIE++ AD+
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  YVIGLIGERGREVTETVDYLKNSEKKNRCVLVYATSDYSSVDRCNAAYIATAIAEFFRTE  240
            +VIGLIGERGREVTE VD L+ S+KK++CVLV+ATSD++SVDRCNAA +AT++AE+FR +
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GHKVALFIDSLTRYARALRDVALAAGESPARRGYPVSVFDSLPRLLERPGKLKAGGSITA  300
            G +V LFIDS+TRYARALRDVALA+GE PARRGYP SVFD+LPRLLERPG   + GSITA
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-TSEGSITA  299

Query  301  FYTVLLEDDDFADPLAEEVRSILDGHIYLSRNLAQKGQFPAIDSLKSISRVFTQVVDEKH  360
            FYTVLLE ++ ADP+A+E+RSILDGH+YLSR+LA +G++PAID LKS+SRVF QV    H
Sbjct  300  FYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTH  359

Query  361  RIMAAAFRELLSEIEELRTIIDFGEYKPGENASQDKIYNKISVVESFL  408
               A+A R L++ +EEL+ +ID+GEY+PGEN  +D+  +    + + L
Sbjct  360  AEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWL  407

58) SbBS512_A0183 in NC_010660


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  422 bits (1587),  Expect = 3e-119, Method: Compositional matrix adjust.
 Identities = 238/408 (59%), Positives = 329/408 (81%), Gaps = 1/408 (0%)

Query  1    MSYIKLLTQLSFPNRISGPILETSLSDVSIGEICNIQAGIESNEIIARAQVVGFHDEKTI  60
            M   +LL  L++P++I+GPI+E+ L DV+IGE+C+I+ G + ++++ARAQVVG++ E+T+
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  61   LSLIGNSRGLSRQTLIKPTAQFLHTQVGRGLLGAVVNPLGEVTDKFAVTDNSEILYRPVD  120
            LSLIGN++GLSR+ ++ PT++ L + VG ++LGAV++P G + ++F+    +    R +D
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  NAPPLYSERAAIEKPFLTGVKVIDSLLTCGEGQRMGIFASAGCGKTFLMNMLIEHSSADI  180
             APP Y+ R ++  P++TGV+ ID+LLTCG GQRMGIFASAGCGKT LM+MLIE++ AD+
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  181  YVIGLIGERGREVTETVDYLKNSEKKSRCVLVYATSDYSSVDRCNAAYIATAIAEFFRTE  240
            +VIGLIGERGREVTE VD L+ S+KK +CVLV+ATSD++SVDRCNAA +AT++AE+FR +
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  241  GHKVALFIDSLTRYARALRDVALAAGESPARRGYPVSVFDSLPRLLERPGKLKAGGSITA  300
            G +V LFIDS+TRYARALRDVALA+GE PARRGYP SVFD+LPRLLERPG   + GSITA
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-TSEGSITA  299

Query  301  FYTVLLEDDDFADPLAEEVRSILDGHIYLSRNLAQKGQFPAIDSLKSISRVFTQVVDEKH  360
            FYTVLLE ++ ADP+A+E+RSILDGH+YLSR+LA +G++PAID LKS+SRVF QV    H
Sbjct  300  FYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTH  359

Query  361  RIMAAAFRELLSEIEELRTIIDFGEYKPGENASQDKIYNKISVVESFL  408
               A+A R L++ +EEL+ +ID+GEY+PGEN  +D+  +    + + L
Sbjct  360  AEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWL  407

59) spaL in NC_016830


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  404 bits (1521),  Expect = 5e-114, Method: Compositional matrix adjust.
 Identities = 256/423 (61%), Positives = 340/423 (81%), Gaps = 0/423 (0%)

Query  4    RLERLAAHPLRLSGPLIEAALSEVVVGEICEVRRHWRSPHVAARAQVIGFKPGAVLLSLL  63
            RL +  A P +++GP+IEA L +V +GE+CE+RR W+  +V ARAQV+G++    +LSL+
Sbjct  5    RLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLI  64

Query  64   GEAKGLSRESMIVPTGSTLQLTCSDALLGSVVDPQGVIVERLAPSMAVAQRDCPVDADPP  123
            G+A+GLSR+ ++ PTG +L    + ++LG+V+DP G IVER++P +A    +  +D  PP
Sbjct  65   GNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPP  124

Query  124  SYQQRRPVVEPLRTGIRVIDGLLTCGVGQRIGIFAAAGSGKTTLINMLIEHTDAEVFVIG  183
            SY  R  V EPL TG+R IDGLLTCGVGQR+GIFA+AG GKT L++MLIE+T+A+VFVIG
Sbjct  125  SYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIG  184

Query  184  LIGERGREVTEFIEHLRQSPMCNRCVVVYATSDFSSVDRCNSALQATTIAEYFRDQGRRV  243
            LIGERGREVTEF++ LR S   ++CV+V+ATSDF+SVDRCN+A  ATT+AEYFRDQG+RV
Sbjct  185  LIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRV  244

Query  244  VLLLDSltryararrdlalaageaPARRGYPASVFDALPRLLERPGVTASGSITAWYTVL  303
            VL++DS+TRYARA RD+ALA+GE PARRGYPASVFD LPRLLERPG T+ GSITA YTVL
Sbjct  245  VLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVL  304

Query  304  LESDDEPDPIAEEIRSILDGHVYLSRALAAKGHYPAIDVLRSVSRVATQVTSPEVRQlaa  363
            LES++E+DP+A+EIRSILDGH+YLSR LA++GHYPAIDVL+SVSRV  QVT+P   + A+
Sbjct  305  LESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQAS  364

Query  364  atrdtlarlEQLQVFLDMGEYSPGVDAANDHALQRREALSQWLRQPTDQCVEPDETLRSL  423
            A R  ++RLE+LQ+F+D+GEY PG +  ND+A+Q R++L  WL QP  Q    D+TL ++
Sbjct  365  AVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

Query  424  HEL  426
            + +
Sbjct  425  NAF  427

60) EAM_2663 in NC_013971


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  400 bits (1504),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 243/420 (58%), Positives = 328/420 (79%), Gaps = 3/420 (0%)

Query  9    LAHPLRIQGNVIEAHLPGTRIGEICEIEKSLLEPEVVGFAQVIGFNKEHTLLSLLNDNNG  68
            LA P +I G +IEA+L +  IGE+CEI ++  + +VV+ AQV+G+++E+T+LSL+ + +G
Sbjct  10   LAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQG  69

Query  69   FSRDNVLLPTGKPFRVAVSERTLGAILDATGTIQGRLDGGPVAAPTGGENLETGGVPRDF  128
            +SRD VL PTG+++   V+   LGA+LD+TG I  R+   P  AP + E +  +  P  +
Sbjct  70   LSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERF--TPEVAPISEERV-IDVAPPSY  126

Query  129  TQRKPIAVPLATGVRAIDGLLTCGQGQRMGIFAAAGCGKTSLMSMIIEHSEADIYVIGLI  188
            + R  +  PL TGVRAIDGLLTCG GQRMGIFA+AGCGKT LM M+IE++EAD++VIGLI
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  189  GERGREVTEFVEELrrssrrsKVVLVYATSDRSCVERCNAAQVASTVAEYFCEQGKNVLL  248
            GERGREVTEFV+ LR S ++ K VLV+ATSD + V+RCNAAQ+A+TVAEYF +QGK V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  249  FIDSVTRYARALRDVALSMGELPARRGYPASVFEALPKLLERPGRFLTGSISAFYTVLIE  308
            FIDS+TRYARALRDVAL+ GE PARRGYPASVF+ LP+LLERPG    GSI+AFYTVL+E
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  309  NEEESDVIGDEVRSILDGHIYLSKKLAAKGHYPAIDVLQSISRVFQQVTQPEHQQLATHF  368
            +EEE+D ++DE+RSILDGH+YLS+KLA++GHYPAIDVL+S+SRVF QVT P H + A+  
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  369  RDYLVRQNDMQLFIDLGEYKRGENEDNDAAFDKKSAMEAFLKQRMAEQTDIKTCLESLDG  428
            R  + R +++QLFIDLGEY+ GEN DND A + + ++ A L Q +A+ + +   L ++++
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

61) spaI1 in NC_013961


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  400 bits (1504),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 243/420 (58%), Positives = 328/420 (79%), Gaps = 3/420 (0%)

Query  9    LAHPLRIQGNVIEAHLPGTRIGEICEIEKSLLEPEVVGFAQVIGFNKEHTLLSLLNDNNG  68
            LA P +I G +IEA+L +  IGE+CEI ++  + +VV+ AQV+G+++E+T+LSL+ + +G
Sbjct  10   LAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQG  69

Query  69   FSRDNVLLPTGKPFRVAVSERTLGAILDATGTIQGRLDGGPVAAPTGGENLETGGVPRDF  128
            +SRD VL PTG+++   V+   LGA+LD+TG I  R+   P  AP + E +  +  P  +
Sbjct  70   LSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERF--TPEVAPISEERV-IDVAPPSY  126

Query  129  TQRKPIAVPLATGVRAIDGLLTCGQGQRMGIFAAAGCGKTSLMSMIIEHSEADIYVIGLI  188
            + R  +  PL TGVRAIDGLLTCG GQRMGIFA+AGCGKT LM M+IE++EAD++VIGLI
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  189  GERGREVTEFVEELrrssrrsKVVLVYATSDRSCVERCNAAQVASTVAEYFCEQGKNVLL  248
            GERGREVTEFV+ LR S ++ K VLV+ATSD + V+RCNAAQ+A+TVAEYF +QGK V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  249  FIDSVTRYARALRDVALSMGELPARRGYPASVFEALPKLLERPGRFLTGSISAFYTVLIE  308
            FIDS+TRYARALRDVAL+ GE PARRGYPASVF+ LP+LLERPG    GSI+AFYTVL+E
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  309  NEEESDVIGDEVRSILDGHIYLSKKLAAKGHYPAIDVLQSISRVFQQVTQPEHQQLATHF  368
            +EEE+D ++DE+RSILDGH+YLS+KLA++GHYPAIDVL+S+SRVF QVT P H + A+  
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  369  RDYLVRQNDMQLFIDLGEYKRGENEDNDAAFDKKSAMEAFLKQRMAEQTDIKTCLESLDG  428
            R  + R +++QLFIDLGEY+ GEN DND A + + ++ A L Q +A+ + +   L ++++
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

62) invC in NC_019670


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  396 bits (1488),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 256/422 (61%), Positives = 339/422 (81%), Gaps = 0/422 (0%)

Query  4    RLQRHGAHPLRLSGPLIEAALGDVVIGEVCEVRRHWRLPEVAARAQVIGFKPGAVVLSLL  63
            RL +  A P +++GP+IEA L DV IGE+CE+RR W+  +V ARAQV+G++    VLSL+
Sbjct  5    RLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLI  64

Query  64   GDAKGLSRESMIVPTGSILQLTCSDALLGSVVDPQGAIVERLAPSTALAQEDYPVDADPP  123
            G+A+GLSR+ ++ PTG  L    + ++LG+V+DP G IVER++P  A   E+  +D  PP
Sbjct  65   GNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPP  124

Query  124  SYQQRRPVDTPLRTGIRVIDGLLTCGIGQRIGIFAAAGSGKTTLINMLINHTDADVFVIG  183
            SY  R  V  PL TG+R IDGLLTCG+GQR+GIFA+AG GKT L++MLI++T+ADVFVIG
Sbjct  125  SYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIG  184

Query  184  LIGERGREVTEFIEHLRQSEIRSRCVVVYATSDFSSVDRCNSALQATAIAEYFRDQGLRV  243
            LIGERGREVTEF++ LR S+ + +CV+V+ATSDF+SVDRCN+A  AT++AEYFRDQG RV
Sbjct  185  LIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRV  244

Query  244  VLLLDSltryararrdlalaageaPARRGYPASVFDALPRLLERPGVTASGSITAWYTVL  303
            VL++DS+TRYARA RD+ALA+GE PARRGYPASVFD LPRLLERPG T+ GSITA YTVL
Sbjct  245  VLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVL  304

Query  304  LESDDEPDPIAEEIRSILDGHIYLSRALAAKGHYPAIDVLRSVSRvatqvtapqvqqlaa  363
            LES++E+DP+A+EIRSILDGH+YLSR LA++GHYPAIDVL+SVSRV  QVT+P   + A+
Sbjct  305  LESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQAS  364

Query  364  atRETLTRLEQLQVFLDMGEYSPGADAANDQALQRREALYQWLRQPTGERCEPDEALGQL  423
            A R  +TRLE+LQ+F+D+GEY PG +  ND+A+Q R++L  WL QP ++    D++L+ +
Sbjct  365  AVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

Query  424  QG  425
            ++
Sbjct  425  NA  426

63) SG0565 in NC_007712


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  394 bits (1481),  Expect = 7e-111, Method: Compositional matrix adjust.
 Identities = 236/423 (56%), Positives = 323/423 (77%), Gaps = 3/423 (0%)

Query  10   FDYAAHPTRIQGNIIEASLPAAAIGEVCEVLSSINDTSLAGYARVIGFNGSRTMLSLLCD  69
            ++Y A P +I G IIEA L   AIGE+CE+  + ++  + + A+V+G++  RT+LSL+ +
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  70   SAGFSQHHLLVPTGKPFQFPLGEALLGAVLDPLGNICARLDGATETALIATEHRPIDVEA  129
            + G+S++ +L PTG+++   +G ++LGAVLDP G+I  R+          +E+R IDV +
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPI---SEERVIDVAP  123

Query  130  LHFSEREPIAEKLITRIRAIDGLLTCGHGQRLGIFAAAGCGKTSLMNMLIEHSEADVYVV  189
              ++ R  + E LIT +RAIDGLLTCG GQR+GIFA+AGCGKT LM+MLIE++EADV+V+
Sbjct  124  PSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVI  183

Query  190  GLIGERGREVTEFIEELKHSSRSGKVVLVNSTSDRSSVERCNAAQVATTVAEYFRDQGKN  249
            GLIGERGREVTEF++ L+ S +  K VLV +TSD +SV+RCNAAQ+ATTVAEYFRDQGK 
Sbjct  184  GLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKR  243

Query  250  VLLFIDSITRYARALRDMALSMGELPARRGYPASVFERLPKLLERPGSSQLGSITAFYTV  309
            V+LFIDS+TRYARALRD+AL+ GE PARRGYPASVF+ LP+LLERPG++  GSITAFYTV
Sbjct  244  VVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTV  303

Query  310  LLENEEEPDAIGDEVRSILDGHIYLSHTLAAQGHYPAIDILRSTSRLFLQITDKQQQRAA  369
            LLE+EEE+D+++DE+RSILDGH+YLS+ LA+QGHYPAID+L+S SR+F Q+T   +   A
Sbjct  304  LLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQA  363

Query  370  VRFRDLLVRQRDMQLYLDLGEYRRGENQENDNAFDKENIMSDFLRQPLDECMEFSQTLER  429
               R L+ R  ++QL++DLGEYR GEN +ND A +  + +   L QP+ +   F +TL  
Sbjct  364  SAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSG  423

Query  430  LNE  432
            +N 
Sbjct  424  MNA  426

64) EAM_1561 in NC_013971


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  392 bits (1475),  Expect = 2e-110, Method: Compositional matrix adjust.
 Identities = 236/424 (56%), Positives = 329/424 (78%), Gaps = 3/424 (0%)

Query  3    TQMLVRLAHPLRIQGNVIEAYLPDTKIGEICEIQKSLVESQVLGLAQVTGFNKEHTFLSL  62
             ++L  LA P +I G +IEA L D  IGE+CEI+++  + QV++ AQV G+++E+T LSL
Sbjct  4    PRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSL  63

Query  63   LTDSQGFSRENVLLATGKPLRVDVHQGISGAIIDATGIIRGRLDDVPVTPLTGTKSIMAC  122
            + ++QG+SR+ VL +TG++L   V  ++ GA++D+TG I  R+    V+P++  + I   
Sbjct  64   IGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP-EVAPISEERVIDV-  121

Query  123  GAARDFSLRKTITEPLLTGIRAIDGLLTCGQGQRVGIFATAGCGKTSLMNMLIEHSQADI  182
             A+  ++ R  + EPL+TG+RAIDGLLTCG GQR+GIFA+AGCGKT LM+MLIE+++AD+
Sbjct  122  -APPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  183  YVIGLIGERGREVTEFVESMRHSSRRSRVILVYATSDRSSVERTNAAQIASSIAEYFSDM  242
            +VIGLIGERGREVTEFV+ +R S ++ + +LV+ATSD +SV+R NAAQ+A+++AEYF D 
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  243  GKNVLLFIDSITRYARALRDVALSMGEMPARRGYPASVFEALPKLLERPGCFITGTITAF  302
            GK V+LFIDS+TRYARALRDVAL+ GE PARRGYPASVF+ LP+LLERPG    G+ITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  303  YTVLIENEEEPDIIGDEVRSILDGHIYLSRKLAAKGHYPAINVLNSLSRVFSQVTNCHQQ  362
            YTVL+E+EEE+D ++DE+RSILDGH+YLSRKLA++GHYPAI+VL+S+SRVF+QVT   + 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  363  QMANSFRDLLQRQSEMQLFIDLGEYRRGENEKNDIAIDKSIQMEAFLKQDVTEKIAISTC  422
            + A++ R L+ R  E+QLFIDLGEYR GEN  ND A++    + A L Q V++  ++   
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  423  LDEL  426
            L  +
Sbjct  421  LSGM  424

65) spaI3 in NC_013961


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  392 bits (1475),  Expect = 2e-110, Method: Compositional matrix adjust.
 Identities = 236/424 (56%), Positives = 329/424 (78%), Gaps = 3/424 (0%)

Query  3    TQMLVRLAHPLRIQGNVIEAYLPDTKIGEICEIQKSLVESQVLGLAQVTGFNKEHTFLSL  62
             ++L  LA P +I G +IEA L D  IGE+CEI+++  + QV++ AQV G+++E+T LSL
Sbjct  4    PRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSL  63

Query  63   LTDSQGFSRENVLLATGKPLRVDVHQGISGAIIDATGIIRGRLDDVPVTPLTGTKSIMAC  122
            + ++QG+SR+ VL +TG++L   V  ++ GA++D+TG I  R+    V+P++  + I   
Sbjct  64   IGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP-EVAPISEERVIDV-  121

Query  123  GAARDFSLRKTITEPLLTGIRAIDGLLTCGQGQRVGIFATAGCGKTSLMNMLIEHSQADI  182
             A+  ++ R  + EPL+TG+RAIDGLLTCG GQR+GIFA+AGCGKT LM+MLIE+++AD+
Sbjct  122  -APPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  183  YVIGLIGERGREVTEFVESMRHSSRRSRVILVYATSDRSSVERTNAAQIASSIAEYFSDM  242
            +VIGLIGERGREVTEFV+ +R S ++ + +LV+ATSD +SV+R NAAQ+A+++AEYF D 
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  243  GKNVLLFIDSITRYARALRDVALSMGEMPARRGYPASVFEALPKLLERPGCFITGTITAF  302
            GK V+LFIDS+TRYARALRDVAL+ GE PARRGYPASVF+ LP+LLERPG    G+ITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  303  YTVLIENEEEPDIIGDEVRSILDGHIYLSRKLAAKGHYPAINVLNSLSRVFSQVTNCHQQ  362
            YTVL+E+EEE+D ++DE+RSILDGH+YLSRKLA++GHYPAI+VL+S+SRVF+QVT   + 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  363  QMANSFRDLLQRQSEMQLFIDLGEYRRGENEKNDIAIDKSIQMEAFLKQDVTEKIAISTC  422
            + A++ R L+ R  E+QLFIDLGEYR GEN  ND A++    + A L Q V++  ++   
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  423  LDEL  426
            L  +
Sbjct  421  LSGM  424

66) ysaN in NC_008800


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  391 bits (1469),  Expect = 6e-110, Method: Compositional matrix adjust.
 Identities = 242/425 (57%), Positives = 334/425 (79%), Gaps = 8/425 (1%)

Query  8    AHPSRIHGCLLEAPLHGVFIGEICLIERDLCQPEVIAKAQVVGFKEGQTILSLIGRAQGL  67
            A P +I G ++EA L++V IGE+C I R+  Q +V+A+AQVVG++  +T+LSLIG AQGL
Sbjct  11   AYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGL  70

Query  68   TREVVIRPTGQPFVFEMGEHLAGKIYNAAGEEVGVLSNATA--SSEPLFTTLCRVDNPPV  125
            +R+VV+ PTG+++   +G  + G + +++G  V  ++   A  S E +      +D +P 
Sbjct  71   SRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV------IDVAPP  124

Query  126  SVNLRRPVTTPLVTGVRAIDGLLTCGQGQRMGIFAAAGSGKTSLMSMIMNHAVADICVIA  185
            S   R  V  PL+TGVRAIDGLLTCG GQRMGIFA+AG GKT LM M+++++ AD+ VI+
Sbjct  125  SYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIG  184

Query  186  LIGERGREVTEFIHELQTSPRAAQTILVYATSDSPAVERCNAALLATAMAEYFRDQGKDV  245
            LIGERGREVTEF++ L++S +  + +LV+ATSD P+V+RCNAA LAT++AEYFRDQGK V
Sbjct  185  LIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRV  244

Query  246  LLFVDSMTRYARALRDVALAAGELPARRGYPASVFEQLPLLLERPGALQHGSITAFYTVL  305
            +LF+DSMTRYARALRDVALA+GE PARRGYPASVF++LP LLERPGA  +GSITAFYTVL
Sbjct  245  VLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVL  304

Query  306  LESEEESDPIGDEIRSIIDGHIYLSAQLAGRGHYPAIDILHSISRVFSKVTTPQHRQDAA  365
            LESEEE+DP++DEIRSI+DGH+YLS +LAG+GHYPAID+L S+SRVF++VTTP H ++A+
Sbjct  305  LESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQAS  364

Query  366  KTRDMLGRLAQIQLYLDLGEYQRGENTDNDHALDNRDVIEGFLQQAMEEPGEFSTTLNQL  425
              R ++ RL ++QL++DLGEY+ GEN DND+A++ RD + + L Q++ + + F  TL+ +
Sbjct  365  AVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

Query  426  RELAN  430
              +A+
Sbjct  425  NAFAD  429

67) S70_09815 in NC_017731


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  389 bits (1462),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 237/419 (57%), Positives = 332/419 (80%), Gaps = 4/419 (0%)

Query  8    AHPARIHGCLMEAPLQGVFIGEICVVERSITSKERIAKAQVVGFKEGLTVLSLIGRAQGL  67
            A P +I G ++EA L++V IGE+C + R+   K+ +A+AQVVG++   TVLSLIG AQGL
Sbjct  11   AYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGL  70

Query  68   TRDMVIRPTGLPFVFEMHEQLAGKIFDAAGEQVGVLGHTAETAFCPDSRLMRIDSPPASV  127
            +RD+V+ PTG ++   +   + G ++D++G  V  +  T+E A  ++ R+  ID +P+S 
Sbjct  71   SRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERF--TPEVAPISEERV--IDVAPPSY  126

Query  128  TSRRPIDEPLITGIRAIDGLLTCGLGQRIGIFAAAGSGKTSLMNMIINHAKADIHVVALI  187
            +SR  + EPLITG+RAIDGLLTCG+GQR+GIFA+AG GKT LM+M+I+++ AD+ V++LI
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  188  GERGREVIEFIEELQASPHAAQTVLIYATSDSPPIERCNAALLATTIAEYFRDRNRHVLL  247
            GERGREV EF++ L+AS    + VL++ATSD P+++RCNAA LATT+AEYFRD+ ++V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  248  FVDSMTRYARALRDVALAAGELPARRGYPASVFEQLPMLLERPGRMQQGSITAFYTVLLE  307
            F+DSMTRYARALRDVALA+GE PARRGYPASVF++LP LLERPG   +GSITAFYTVLLE
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  308  SEEESDPIGDEIRSILDGHIYLSHKLAGKGHYPAIDILHSISRVFQKVTTDTHRQAATKV  367
            SEEE+DP++DEIRSILDGH+YLS+KLAG+GHYPAID+L S+SRVF +VTT TH + A+ V
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  368  RDRLSRLEQIQLYLELGEYQRGESEDNDNALDKKEDIEQFLQQKMDEAEHFEIVLNRLD  426
            R  ++RLE++QL+++LGEY+ GE+ DND A++ ++ +   L Q + +   F+  L+ ++
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

68) invC in NC_010694


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  385 bits (1448),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 229/409 (56%), Positives = 316/409 (78%), Gaps = 3/409 (0%)

Query  1    MNPQLLVRLAHPLRIQGSVIEAFLPGTKIGEICEIQKSLIEDDLLGLAQVTGFNNENTFL  60
              P+LL  LA P +I G++IEA L +  IGE+CEI+++  + ++++ AQV G++ E T L
Sbjct  2    KTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVL  61

Query  61   SLLTDNLGFSCENVLFPTGKPFCINVHEDLIGTIIDASGAIRGRFDEQSVNPLTKSKSIV  120
            SL+ +  G+S + VL+PTG+++   V   ++G+++D++G I  RF  + V P++  + I 
Sbjct  62   SLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPE-VAPISEERVID  120

Query  121  ACRAPLDFTLRRPIAEPLITGIRAIDGLLTCGVGQRIGIFAAAGCGKTSLMNMLVTHCEA  180
               AP  ++ R  + EPLITG+RAIDGLLTCGVGQR+GIFA+AGCGKT LM+ML+ + EA
Sbjct  121  V--APPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  181  DVYVIGLIGERVREVTEFVESMKLSSRRAKVILVYATSDRSSVERTNAAQVASSIAGYFS  240
            DV+VIGLIGER REVTEFV+ ++ S ++ K +LV+ATSD +SV+R NAAQ+A+++A YF 
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  241  ELGKKVLLFIDSVTRYARALRDVALSMGELPARRGYPASVFESLPKLLERPGCFITGSIT  300
            + GK+V+LFIDS+TRYARALRDVAL+ GE PARRGYPASVF++LP+LLERPG    GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  301  AFYTVLIENEEEADVIGDEVRSILDGHIYLSHKLAAKGHYPAIDILQSISRVFSSVTDDN  360
            AFYTVL+E+EEEAD ++DE+RSILDGH+YLS+KLA++GHYPAID+L+S+SRVF+ VT   
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  361  HQQLAKVFRSLLQRKSEMQLYIDLGEYRYGENVDNDIAFDKAGDIELFL  409
            H + A   R L+ R  E+QL+IDLGEYR GEN+DND A +  + +   L
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWL  407

69) invC in NC_012214


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  382 bits (1438),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 222/413 (54%), Positives = 322/413 (78%), Gaps = 3/413 (0%)

Query  3    THMLVRLAHPLRIQGNVIEAYLPGTKIGEICQIQKSLVESEVLGLAQITGFNNEHTFLSL  62
             ++L  LA P +I G +IEA L +  IGE+C+I+++  + +V++ AQ+ G++ E+T LSL
Sbjct  4    PRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSL  63

Query  63   LTDSQGFSRENVLLPTGKPLRVEVHEGIKGAIIDATGTIKGHLVDMPVTPYTNVKSIMAC  122
            + ++QG+SR+ VL PTG++L   V  ++ GA++D+TG I  ++    V+P ++ + I   
Sbjct  64   IGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP-EVAPISEERVIDV-  121

Query  123  GSARDFSLRKPITEPLLTGIRAIDGLLTCGQGQRIGIFATAGCGKTSLMNMLIEHSEADI  182
             ++  ++ R  + EPL+TG+RAIDGLLTCG GQR+GIFA+AGCGKT LM+MLIE++EAD+
Sbjct  122  -APPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  183  YVIGLIGERGREVTEFVESMKKSSRRSRIVIVYATSDRSSVERSNAAQIASSIAEYFSEL  242
            +VIGLIGERGREVTEFV+ ++ S ++ + V+V+ATSD +SV+R NAAQ+A+++AEYF + 
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  243  GNNVLLFVDSITRYARALRDVALSMGEMPVRRGYPASVFEALPKLLERPGRFLTGSITAF  302
            G+ V+LF+DS+TRYARALRDVAL+ GE P RRGYPASVF+ LP+LLERPG    GSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  303  YTVLIENEEDPDVIGDEVRSILDGHIYLSRKLAAKGHYPAINVLNSISRVFSQVTERNQQ  362
            YTVL+E+EE++D ++DE+RSILDGH+YLSRKLA++GHYPAI+VL+S+SRVF+QVT   + 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  363  QMANCFRDLLQRQRDMQLFIDLGEYHRGENENNDIAFDKNEQMEEFLKQDMTE  415
            + A+  R L+ R  ++QLFIDLGEY+ GEN +ND A +  + +   L Q +++
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

70) invC in NC_017445


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  377 bits (1418),  Expect = 7e-106, Method: Compositional matrix adjust.
 Identities = 224/413 (55%), Positives = 321/413 (78%), Gaps = 3/413 (0%)

Query  3    THMLVRLAHPLRIQGNVIEAYLPGTKIGEICEIQKSLVESEVLGLAQITGFNNEHTFLSL  62
             ++L  LA P +I G +IEA L +  IGE+CEI+++  + +V++ AQ+ G++ E+T LSL
Sbjct  4    PRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSL  63

Query  63   LTDSRGFSRENVLLPTGKPLRFEVHEGIKGAIIDATGTIKGYLVDMPVTPFTNVKSIMAC  122
            + +++G+SR+ VL PTG++L   V  ++ GA++D+TG I   +    V+P+++ + I   
Sbjct  64   IGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP-EVAPISEERVIDV-  121

Query  123  GTARDFSLRKPITEPLLTGIRAIDGLLTCGQGQRIGIFATAGCGKTSLMNMLIEHSEADI  182
             ++  ++ R  + EPL+TG+RAIDGLLTCG GQR+GIFA+AGCGKT LM+MLIE++EAD+
Sbjct  122  -APPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  183  YVIGLIGERGREVTEFVESMKKSARRSRVVLVYATSDRSSVERSNAAQIASSIAEYFSDM  242
            +VIGLIGERGREVTEFV+ ++ S ++ + VLV+ATSD +SV+R NAAQ+A+++AEYF D 
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  243  GYNVLLFVDSITRYARALRDVALSMGEMPVRRGYPASVFEALPKLLERPGRFLTGSITAF  302
            G  V+LF+DS+TRYARALRDVAL+ GE P RRGYPASVF+ LP+LLERPG    GSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  303  YTVLIENEEDPDVIGDEVRSILDGHIYLSRKLAAKGHYPAINVLNSISRVFSQVTDRNQQ  362
            YTVL+E+EE++D ++DE+RSILDGH+YLSRKLA++GHYPAI+VL+S+SRVF+QVT   + 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  363  QMANCFRDLLQRQRDMQLFIDLGEYHRGENENNDIAFDKNEQMEEFLKQDMTE  415
            + A+  R L+ R  ++QLFIDLGEY+ GEN +ND A +  + +   L Q +++
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

71) PMI2692 in NC_010554


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  377 bits (1417),  Expect = 8e-106, Method: Compositional matrix adjust.
 Identities = 222/427 (52%), Positives = 328/427 (77%), Gaps = 4/427 (0%)

Query  1    MNARFLMFHNAAHPLRIQGNILEVMLRDVFIGEVCQLKENIFSENILGEAIVIGFHNNIA  60
              +R+L +   A P +I G I+E  LRDV IGE+C+++      ++++ A V+G++ + +
Sbjct  2    KTPRLLQY--LAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERT  59

Query  61   ILSMMGSAQGYSLQIIVEPTGKTFSVALGPHILGSMIDSKGNCLLRFNTEIAEKTFSTLC  120
            +LS++G+AQG S ++++ PTG+++S  +G  +LG+++D+ G+ + RF  E+A   +S   
Sbjct  60   VLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVA--PISEER  117

Query  121  PIEGRPPLFSDRLPITTLFKSGIRAIDGLLSCGLGQRMGIFASAGTGKTMLMNMIIRFAQ  180
             I+  PP ++ R+ +   + +G+RAIDGLL+CG+GQRMGIFASAG GKTMLM+M+I  ++
Sbjct  118  VIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTE  177

Query  181  ADVFVIGLIGERGREVTEFIEELKQHKRCENTVLICSTSEQSAVERCNAALVATTVAEYF  240
            ADVFVIGLIGERGREVTEF++ L+   + E+ VL+ +TS+ ++V+RCNAA +ATTVAEYF
Sbjct  178  ADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYF  237

Query  241  RQQGKNVVLFIDSMTRYCRALRDIALTAGELPVRKGYPASVFDKLPAILERPGVTKTGSI  300
            R+QGK VVLFIDSMTRY RALRD+AL++GE P R+GYPASVFD+LP +LERPG T  GSI
Sbjct  238  RDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSI  297

Query  301  TAFYTVLLESDDEPDAIGEEIRSILDGHIYLSRKIAASGHYPAIDVLGSVSRVFQQVTDS  360
            TAFYTVLLES++E+D++++EIRSILDGH+YLSRK+A+ GHYPAIDVL SVSRVF QVT +
Sbjct  298  TAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTP  357

Query  361  KQQKSALKIRQILMRLQDVKLLQELGEYHEGDNELNDIAVRKQAKIESFLTQSFKEKADF  420
             +   A  +R+++ RL++++L+ +LGEY+ G+N  ND A++ +  + + L Q+  + + F
Sbjct  358  THAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

Query  421  QQTLEQM  427
            ++TL  M
Sbjct  418  DDTLSGM  424

72) BB2000_2692 in NC_022000


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  376 bits (1414),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 218/421 (52%), Positives = 325/421 (78%), Gaps = 2/421 (0%)

Query  1    MFHNAAHPLRIQGNILEVMLRDVFIGEVCQLKENIFSENILGEAIVIGFHNNIAILSMMG  60
            +++  A P +I G I+E  LRDV IGE+C+++      ++++ A V+G++ + ++LS++G
Sbjct  6    LLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIG  65

Query  61   SAQGYSLQIIVEPTGKTFSVALGPHILGSMIDSKGNCLLRFNTEIAEKTFNTSCPIEGRP  120
            +AQG S ++++ PTG+++S  +G  +LG+++D+ G+ + RF  E+A   ++    I+  P
Sbjct  66   NAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVA--PISEERVIDVAP  123

Query  121  PLFSDRLPITTLFKSGIRAIDGLLSCGLGQRMGIFASAGTGKTMLMNMIIRFAQADVFVI  180
            P ++ R+ +   + +G+RAIDGLL+CG+GQRMGIFASAG GKTMLM+M+I  ++ADVFVI
Sbjct  124  PSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVI  183

Query  181  GLIGERGREVTEFIEELKQHKRCENTVLICSTSEQSAVERCNAALVATTVAEYFRQQGKN  240
            GLIGERGREVTEF++ L+   + E+ VL+ +TS+ ++V+RCNAA +ATTVAEYFR+QGK 
Sbjct  184  GLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKR  243

Query  241  AVLFIDSMTRYCRALRDIALTAGELPVRKGYPASVFDKLPAILERPGVTKTGSITAFYTV  300
             VLFIDSMTRY RALRD+AL++GE P R+GYPASVFD+LP +LERPG T  GSITAFYTV
Sbjct  244  VVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTV  303

Query  301  LLESDDEPDAIGEEIRSILDGHIYLSRKIAASGHYPAIDVLGSVSRVFQQVTDSKQQKSA  360
            LLES++E+D++++EIRSILDGH+YLSRK+A+ GHYPAIDVL SVSRVF QVT + +   A
Sbjct  304  LLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQA  363

Query  361  LKIRQILMRLQDIKLLQELGEYHEGDNELNDIAVRKQAKIESFLTQSFKEKADFQQTLEQ  420
              +R+++ RL++++L+ +LGEY+ G+N  ND A++ +  + + L Q+  + + F++TL  
Sbjct  364  SAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSG  423

Query  421  M  421
            M
Sbjct  424  M  424

73) spaI in NC_017390


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  374 bits (1407),  Expect = 5e-105, Method: Compositional matrix adjust.
 Identities = 216/397 (55%), Positives = 313/397 (79%), Gaps = 3/397 (0%)

Query  1    MIEAYLPGTKIGEICQIQKSLVESEVLGLAQITGFNNEHTFLSLLTDSQGFSRENVLLPT  60
            +IEA L +  IGE+C+I+++  + +V++ AQ+ G++ E+T LSL+ ++QG+SR+ VL PT
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  61   GKPLRVEVHEGIKGAIIDATGTIKGHLVDMPVTPYTNVKSIMACGSARDFSLRKPITEPL  120
            G++L   V  ++ GA++D+TG I  ++    V+P ++ + I    ++  ++ R  + EPL
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTP-EVAPISEERVIDV--APPSYASRVGVREPL  136

Query  121  LTGIRAIDGLLTCGQGQRIGIFATAGCGKTSLMNMLIEHSEADIYVIGLIGERGREVTEF  180
            +TG+RAIDGLLTCG GQR+GIFA+AGCGKT LM+MLIE++EAD++VIGLIGERGREVTEF
Sbjct  137  ITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEF  196

Query  181  VESMKKSSRRSRIVIVYATSDRSSVERSNAAQIASSIAEYFSELGNNVLLFVDSITRYAR  240
            V+ ++ S ++ + V+V+ATSD +SV+R NAAQ+A+++AEYF + G+ V+LF+DS+TRYAR
Sbjct  197  VDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYAR  256

Query  241  ALRDVALSMGEMPVRRGYPASVFEALPKLLERPGRFLTGSITAFYTVLIENEEDPDVIGD  300
            ALRDVAL+ GE P RRGYPASVF+ LP+LLERPG    GSITAFYTVL+E+EE++D ++D
Sbjct  257  ALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMAD  316

Query  301  EVRSILDGHIYLSRKLAAKGHYPAINVLNSISRVFSQVTERNQQQMANCFRDLLQRQRDM  360
            E+RSILDGH+YLSRKLA++GHYPAI+VL+S+SRVF+QVT   + + A+  R L+ R  ++
Sbjct  317  EIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEEL  376

Query  361  QLFIDLGEYHRGENENNDIAFDKNEQMEEFLKQDMTE  397
            QLFIDLGEY+ GEN +ND A +  + +   L Q +++
Sbjct  377  QLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

74) BTI_4020 in NC_021174


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  374 bits (1404),  Expect = 8e-105, Method: Compositional matrix adjust.
 Identities = 244/418 (59%), Positives = 327/418 (79%), Gaps = 9/418 (2%)

Query  20   IQGPIIEAPLPDVAIGELCAIRAAAGSDTVIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            I GPIIEA L DVAIGELC IR +     V++RAQVVG+ R+ ++LS +G++ GLSR+V 
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  80   LVPTGERMTIDVAPAMLGAVVDATGGIVETFGAKreagaegaaraaaprrraidaappdy  139
            L PTG  ++  V+ ++LGAV+D+TG IVE F +   + +E      AP   A   +  + 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  140  aarrpiERRLATGVRAIDGLLTCGVGQRIGIFAAAGCGKTSLMNMMIEHAAADVYVVALI  199
                     L TGVRAIDGLLTCGVGQR+GIFA+AGCGKT LM+M+IE++ ADV+V++LI
Sbjct  136  ---------LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  200  GERGREVSEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVML  259
            GERGREV+EFV+ +R S  +++ V+V+ATSD +SVDRCNAA +ATT+AEYFRD G  V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  260  FLDSMTryaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTEAGSITAFYTVLLE  319
            F+DSMTRYARALRD+ALA+GE PARRGYPASVF++LPRLLERPG T  GSITAFYTVLLE
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  320  NEEEPDPIGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSTSRLFDEIAHAPHRAAAMQF  379
            +EEE+DP++DEIRSI+DGH+YLSR+L+++GH+PAIDVL+S SR+F++++ + H   A   
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  380  RRHLARIDEMQVFLDLGEYRRGENPENDEALDRRPALDAFLQQAIDEASAFDDTLERM  437
            R+ ++R++E+Q+F+DLGEYR GEN +ND A++ R +L A L Q++ + S+FDDTL  M
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

75) MU9_32 in NC_020418


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  369 bits (1385),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 222/415 (54%), Positives = 317/415 (77%), Gaps = 8/415 (1%)

Query  10   AFPVHIRGYYLEAPLPDVFIGEICLL---WQDVTCRVLLGRAQVVGFNEHNTLLSLIGQA  66
            A+P  I G  +EA L DV IGE+C +   W++   + +++RAQVVG++ + T+LSLIG+A
Sbjct  11   AYPQKITGPIIEAELRDVAIGELCEIRRGWHQ---KQVVARAQVVGLQRERTVLSLIGNA  67

Query  67   AGLTLTTVIAPTGSAVTLTFTPQIPGSVIDPSGNTLARLSEITEPDNRSIIRPVSGEAPD  126
             GL+   V+ PTG A++      + G+V+DP+G+ + R++    P +    R +   +P 
Sbjct  68   QGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE--RVIDVAPPS  125

Query  127  VLSRQRITEILPTGVKAIDALLTCGKGQRLGIFAGAGCGKTVLMNMLIEHAQADIFVIAL  186
              SR  + E L TGV+AID+LLTCG GQR+GIFA+AGCGKT+LM+MLIE+++AD+FVI+L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  187  IGERGREVTELIDELRNSPQAAKCILVCSTSDKPAVDRCNAALVATSLAEYYRDEGKEVI  246
            IGERGREVTE++D LR S +  KC+LV +TSD P+VDRCNAA +AT++AEY+RD+GK V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  247  LFVDSLTRYGRALRDVALSAGEVPVRLGYPASVFEQLPALLERPGATKTGVITAFYTVLL  306
            LF+DS+TRY+RALRDVAL++GE P R GYPASVF++LP LLERPGAT  G ITAFYTVLL
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  307  DSENEPDGFGDEVRSILDGHIYLSRRLAMQNHYPAIDIPASISRVMSQIVSPQHLAAAGH  366
            +SE+E+D  +DE+RSILDGH+YLSR+LA Q HYPAID+  S+SRV +Q+ +P H   A+ 
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  367  FRTLLAKQNELKLLVELGEYKPRLNAENDKAVELTLPMRHFLCQSPAESVAADET  421
             R L+++ +EL+L+++LGEY+P  N +ND+A+++  +++  LCQ+ A+  + D+T
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

76) bsaS in NC_017832


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  357 bits (1341),  Expect = 9e-100, Method: Compositional matrix adjust.
 Identities = 236/408 (58%), Positives = 323/408 (80%), Gaps = 2/408 (0%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            I GPIIEA L +VAIGELC IR +      ++RAQVVG+ R+ ++LS +G++ GLSR+V 
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGapppagaapgrraidaappdyaarrpiE  139
            L PTG  ++  V+ ++LGAV+D+TG IVE F +  ++ +      + +++          
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  140  RRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGREV  199
              L TGVRAIDGLL+CGVGQR GIFA+AGCGKT LM+M+IE++ ADV+V++LIGERGREV
Sbjct  136  --LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  200  SEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMTr  259
            +EFV+ +R S  +++ V+V+ATSD +SVDRCNAA +ATT+AEYFRD G  V+LF+DSMTR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  260  yaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPDP  319
            YARALRD+ALA+GE PARRGYPASVF++LPRLLERPG T  GSITAFYTVLLE+EEE+DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  320  IGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLARI  379
            ++DEIRSI+DGH+YLSR+L+++GH+PAIDVL+S SR+F++++ + H   A   R+ ++R+
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  380  DEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTL  427
            +E+Q+F+DLGEYR GEN +ND A++ R +L A L Q+V + S+F+DTL
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

77) bsaS in NC_007435


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  357 bits (1341),  Expect = 9e-100, Method: Compositional matrix adjust.
 Identities = 236/408 (58%), Positives = 323/408 (80%), Gaps = 2/408 (0%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            I GPIIEA L +VAIGELC IR +      ++RAQVVG+ R+ ++LS +G++ GLSR+V 
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGapppagaapgrraidaappdyaarrpiE  139
            L PTG  ++  V+ ++LGAV+D+TG IVE F +  ++ +      + +++          
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  140  RRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGREV  199
              L TGVRAIDGLL+CGVGQR GIFA+AGCGKT LM+M+IE++ ADV+V++LIGERGREV
Sbjct  136  --LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  200  SEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMTr  259
            +EFV+ +R S  +++ V+V+ATSD +SVDRCNAA +ATT+AEYFRD G  V+LF+DSMTR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  260  yaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPDP  319
            YARALRD+ALA+GE PARRGYPASVF++LPRLLERPG T  GSITAFYTVLLE+EEE+DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  320  IGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLARI  379
            ++DEIRSI+DGH+YLSR+L+++GH+PAIDVL+S SR+F++++ + H   A   R+ ++R+
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  380  DEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTL  427
            +E+Q+F+DLGEYR GEN +ND A++ R +L A L Q+V + S+F+DTL
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

78) BURPS668_A2171 in NC_009075


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  357 bits (1341),  Expect = 9e-100, Method: Compositional matrix adjust.
 Identities = 236/408 (58%), Positives = 323/408 (80%), Gaps = 2/408 (0%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            I GPIIEA L +VAIGELC IR +      ++RAQVVG+ R+ ++LS +G++ GLSR+V 
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGapppagaapgrraidaappdyaarrpiE  139
            L PTG  ++  V+ ++LGAV+D+TG IVE F +  ++ +      + +++          
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  140  RRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGREV  199
              L TGVRAIDGLL+CGVGQR GIFA+AGCGKT LM+M+IE++ ADV+V++LIGERGREV
Sbjct  136  --LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  200  SEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMTr  259
            +EFV+ +R S  +++ V+V+ATSD +SVDRCNAA +ATT+AEYFRD G  V+LF+DSMTR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  260  yaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPDP  319
            YARALRD+ALA+GE PARRGYPASVF++LPRLLERPG T  GSITAFYTVLLE+EEE+DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  320  IGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLARI  379
            ++DEIRSI+DGH+YLSR+L+++GH+PAIDVL+S SR+F++++ + H   A   R+ ++R+
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  380  DEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTL  427
            +E+Q+F+DLGEYR GEN +ND A++ R +L A L Q+V + S+F+DTL
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

79) bsaS in NC_006351


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  357 bits (1341),  Expect = 9e-100, Method: Compositional matrix adjust.
 Identities = 236/408 (58%), Positives = 323/408 (80%), Gaps = 2/408 (0%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            I GPIIEA L +VAIGELC IR +      ++RAQVVG+ R+ ++LS +G++ GLSR+V 
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGapppagaapgrraidaappdyaarrpiE  139
            L PTG  ++  V+ ++LGAV+D+TG IVE F +  ++ +      + +++          
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  140  RRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGREV  199
              L TGVRAIDGLL+CGVGQR GIFA+AGCGKT LM+M+IE++ ADV+V++LIGERGREV
Sbjct  136  --LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  200  SEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMTr  259
            +EFV+ +R S  +++ V+V+ATSD +SVDRCNAA +ATT+AEYFRD G  V+LF+DSMTR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  260  yaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPDP  319
            YARALRD+ALA+GE PARRGYPASVF++LPRLLERPG T  GSITAFYTVLLE+EEE+DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  320  IGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLARI  379
            ++DEIRSI+DGH+YLSR+L+++GH+PAIDVL+S SR+F++++ + H   A   R+ ++R+
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  380  DEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTL  427
            +E+Q+F+DLGEYR GEN +ND A++ R +L A L Q+V + S+F+DTL
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

80) BDL_4850 in NC_021877


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  357 bits (1341),  Expect = 9e-100, Method: Compositional matrix adjust.
 Identities = 236/408 (58%), Positives = 323/408 (80%), Gaps = 2/408 (0%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            I GPIIEA L +VAIGELC IR +      ++RAQVVG+ R+ ++LS +G++ GLSR+V 
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGapppagaapgrraidaappdyaarrpiE  139
            L PTG  ++  V+ ++LGAV+D+TG IVE F +  ++ +      + +++          
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  140  RRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGREV  199
              L TGVRAIDGLL+CGVGQR GIFA+AGCGKT LM+M+IE++ ADV+V++LIGERGREV
Sbjct  136  --LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  200  SEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMTr  259
            +EFV+ +R S  +++ V+V+ATSD +SVDRCNAA +ATT+AEYFRD G  V+LF+DSMTR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  260  yaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPDP  319
            YARALRD+ALA+GE PARRGYPASVF++LPRLLERPG T  GSITAFYTVLLE+EEE+DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  320  IGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLARI  379
            ++DEIRSI+DGH+YLSR+L+++GH+PAIDVL+S SR+F++++ + H   A   R+ ++R+
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  380  DEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTL  427
            +E+Q+F+DLGEYR GEN +ND A++ R +L A L Q+V + S+F+DTL
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

81) bsaS in NC_006349


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  356 bits (1338),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 238/409 (59%), Positives = 324/409 (80%), Gaps = 3/409 (0%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            I GPIIEA L +VAIGELC IR +      ++RAQVVG+ R+ ++LS +G++ GLSR+V 
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGappppagaapgrraidaappdyaarrpi  139
            L PTG  ++  V+ ++LGAV+D+TG IVE F +  +P +         ++ +   + R  
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  140  ERRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGRE  199
               L TGVRAIDGLL+CGVGQR GIFA+AGCGKT LM+M+IE++ ADV+V++LIGERGRE
Sbjct  136  ---LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  200  VSEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMT  259
            V+EFV+ +R S  +++ V+V+ATSD +SVDRCNAA +ATT+AEYFRD G  V+LF+DSMT
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  260  ryaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPD  319
            RYARALRD+ALA+GE PARRGYPASVF++LPRLLERPG T  GSITAFYTVLLE+EEE+D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  320  PIGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLAR  379
            P++DEIRSI+DGH+YLSR+L+++GH+PAIDVL+S SR+F++++ + H   A   R+ ++R
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  380  IDEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTL  428
            ++E+Q+F+DLGEYR GEN +ND A++ R +L A L Q+V + S+F+DTL
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

82) bsaS in NC_008835


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  356 bits (1338),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 238/409 (59%), Positives = 324/409 (80%), Gaps = 3/409 (0%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            I GPIIEA L +VAIGELC IR +      ++RAQVVG+ R+ ++LS +G++ GLSR+V 
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGappppagaapgrraidaappdyaarrpi  139
            L PTG  ++  V+ ++LGAV+D+TG IVE F +  +P +         ++ +   + R  
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  140  ERRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGRE  199
               L TGVRAIDGLL+CGVGQR GIFA+AGCGKT LM+M+IE++ ADV+V++LIGERGRE
Sbjct  136  ---LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  200  VSEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMT  259
            V+EFV+ +R S  +++ V+V+ATSD +SVDRCNAA +ATT+AEYFRD G  V+LF+DSMT
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  260  ryaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPD  319
            RYARALRD+ALA+GE PARRGYPASVF++LPRLLERPG T  GSITAFYTVLLE+EEE+D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  320  PIGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLAR  379
            P++DEIRSI+DGH+YLSR+L+++GH+PAIDVL+S SR+F++++ + H   A   R+ ++R
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  380  IDEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTL  428
            ++E+Q+F+DLGEYR GEN +ND A++ R +L A L Q+V + S+F+DTL
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

83) bsaS in NC_009079


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  356 bits (1338),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 238/409 (59%), Positives = 324/409 (80%), Gaps = 3/409 (0%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            I GPIIEA L +VAIGELC IR +      ++RAQVVG+ R+ ++LS +G++ GLSR+V 
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGappppagaapgrraidaappdyaarrpi  139
            L PTG  ++  V+ ++LGAV+D+TG IVE F +  +P +         ++ +   + R  
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  140  ERRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGRE  199
               L TGVRAIDGLL+CGVGQR GIFA+AGCGKT LM+M+IE++ ADV+V++LIGERGRE
Sbjct  136  ---LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  200  VSEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMT  259
            V+EFV+ +R S  +++ V+V+ATSD +SVDRCNAA +ATT+AEYFRD G  V+LF+DSMT
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  260  ryaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRAGSITAFYTVLLENEEEPD  319
            RYARALRD+ALA+GE PARRGYPASVF++LPRLLERPG T  GSITAFYTVLLE+EEE+D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  320  PIGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLAR  379
            P++DEIRSI+DGH+YLSR+L+++GH+PAIDVL+S SR+F++++ + H   A   R+ ++R
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  380  IDEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTL  428
            ++E+Q+F+DLGEYR GEN +ND A++ R +L A L Q+V + S+F+DTL
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

84) BURPS1106A_A2083 in NC_009078


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  355 bits (1335),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 236/408 (58%), Positives = 323/408 (80%), Gaps = 2/408 (0%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            I GPIIEA L +VAIGELC IR +      ++RAQVVG+ R+ ++LS +G++ GLSR+V 
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGapppagaapgrraidaappdyaarrpiE  139
            L PTG  ++  V+ ++LGAV+D+TG IVE F +  ++ +      + +++          
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  140  RRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGREV  199
              L TGVRAIDGLL+CGVGQR GIFA+AGCGKT LM+M+IE++ ADV+V++LIGERGREV
Sbjct  136  --LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  200  SEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMTr  259
            +EFV+ +R S  +++ V+V+ATSD +SVDRCNAA +ATT+AEYFRD G  V+LF+DSMTR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  260  yaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRVGSITAFYTVLLENEEEPDP  319
            YARALRD+ALA+GE PARRGYPASVF++LPRLLERPG T  GSITAFYTVLLE+EEE+DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  320  IGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLARI  379
            ++DEIRSI+DGH+YLSR+L+++GH+PAIDVL+S SR+F++++ + H   A   R+ ++R+
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  380  DEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTL  427
            +E+Q+F+DLGEYR GEN +ND A++ R +L A L Q+V + S+F+DTL
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

85) BPC006_II2065 in NC_018529


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  355 bits (1335),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 236/408 (58%), Positives = 323/408 (80%), Gaps = 2/408 (0%)

Query  20   IQGPIIEAPLPEVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSTLGSTAGLSRQVA  79
            I GPIIEA L +VAIGELC IR +      ++RAQVVG+ R+ ++LS +G++ GLSR+V 
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  80   LVPTGERMTIDVSPALLGAVVDATGGIVETFGapppagaapgrraidaappdyaarrpiE  139
            L PTG  ++  V+ ++LGAV+D+TG IVE F +  ++ +      + +++          
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  140  RRLATGVRAIDGLLACGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGREV  199
              L TGVRAIDGLL+CGVGQR GIFA+AGCGKT LM+M+IE++ ADV+V++LIGERGREV
Sbjct  136  --LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  200  SEFVERMRRSGSRDRTVVVYATSDRSSVDRCNAALVATTIAEYFRDLGCDVMLFLDSMTr  259
            +EFV+ +R S  +++ V+V+ATSD +SVDRCNAA +ATT+AEYFRD G  V+LF+DSMTR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  260  yaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTRVGSITAFYTVLLENEEEPDP  319
            YARALRD+ALA+GE PARRGYPASVF++LPRLLERPG T  GSITAFYTVLLE+EEE+DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  320  IGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLRSASRLFDEIADAPHRALAKRFRQHLARI  379
            ++DEIRSI+DGH+YLSR+L+++GH+PAIDVL+S SR+F++++ + H   A   R+ ++R+
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  380  DEMQVFLDLGEYRRGENPENddaldrrpaldaFLQQAVDEASAFGDTL  427
            +E+Q+F+DLGEYR GEN +ND A++ R +L A L Q+V + S+F+DTL
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

86) BTH_II0832 in NC_007650


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  335 bits (1257),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 238/412 (58%), Positives = 322/412 (79%), Gaps = 3/412 (0%)

Query  20   IQGPIIEAPLPDVAIGELCAIRAAAGSDTTIGRAQVVGFGRDTAILSALGSTAGLSRQVA  79
            I GPIIEA L DVAIGELC IR +      ++RAQVVG+ R+ ++LS +G++ GLSR+V 
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  80   LVPTGERMTIDVSPallgavvdaaggvvETLgtagalrgaaprrsaidaappdyaarrpi  139
            L PTG  ++  V+ ++LGAV+D++G +VE +    A  +         ++ +   + R  
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE-  134

Query  140  ERRLATGVRAIDGLLTCGVGQRFGIFAAAGCGKTSLMNMMIEHAAADVYVVALIGERGRE  199
               L TGVRAIDGLLTCGVGQR GIFA+AGCGKT LM+M+IE++ ADV+V++LIGERGRE
Sbjct  135  --PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  200  VSEFVERMRRSGSRDRTVVVYATSDRASVDRCNAALVATTIAEYFRDLGCDVMLFLDSMT  259
            V+EFV+ +R S  +++ V+V+ATSD +SVDRCNAA +ATT+AEYFRD G  V+LF+DSMT
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  260  ryaralrdlalaTGEAPARRGYPASVFEQLPRLLERPGRTHAGSITAFYTVLLENEEEPD  319
            RYARALRD+ALA+GE PARRGYPASVF++LPRLLERPG T  GSITAFYTVLLE+EEE+D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  320  PIGDEIRSIVDGHVYLSRQLGAKGHFPAIDVLKSASRLFDEIADAPHRSLAKRFRQHLAR  379
            P++DEIRSI+DGH+YLSR+L+++GH+PAIDVLKS SR+F++++ + H   A   R+ ++R
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  380  IDEMQVFLDLGEYRRGENPENddaldrrpaldaFLKQEIDEASAFGDTLERM  431
            ++E+Q+F+DLGEYR GEN +ND A++ R +L A L Q + + S+F+DTL  M
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

87) yscN in NC_016642


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  312 bits (1171),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 192/418 (46%), Positives = 295/418 (71%), Gaps = 13/418 (3%)

Query  46   RKVVGTLIHAVVPKVEIGEIAELYTRSTGRRLMA--EVVGFHDDEALLSPIGELYGVGPD  103
            +K+ G +I+A +  V IGE+ E+      ++++A  +VVG++ + ++LS IG+  G++ D
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  104  TEVRPTGHVQTVAVGEGLLGRVLDGMGNFIDGVDQEFVPETHYPVNQD------PPDPMQ  157
              + PTG+  +  VG ++LG VLD  G++++     F PE   P++++      PP    
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVE----RFTPEVA-PISEERVIDVAPPSYAS  128

Query  158  RQIIDKPLPMGVRAIDGMLTTGEGQRMGIFASAGGGKSTLMAMLVKGAAVDVTVLALIGE  217
            R  +  PL  GVRAIDG+LT G GQRMGIFASAG GK+ LM ML+  +  DV V++LIGE
Sbjct  129  RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGE  188

Query  218  RGREVREFIEHDLGPEGMKKSVVVVATSDKSSLERSKAAFVATSIAEYFRDQGKRVLLLM  277
            RGREV EF++   +++   K V+V ATSD +S++R +AA +AT++AEYFRDQGKRV+L++
Sbjct  189  RGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFI  248

Query  278  DSVTRFARAQREIGLAVGEPPTRRGFPPSVFATLPRLMERAGMNDKGSITAFYTVLMEGD  337
            DS+TR+ARA R+++LA GE P+RRG+P+SVF  LPRL+ER+G    GSITAFYTVL+E++
Sbjct  249  DSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESE  308

Query  338  DMNEPVSDETRSILDGHIVLSRKLAAANHYPAIDILNSKSRVMTAVTSPEHREMSGKVNS  397
            +  +P++DE RSILDGH+ LSRKLA+  HYPAID+L+S SRV   VT+P H E ++ V  
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  398  LLAKYEEVELLVQIGEYQKGADSEADLAIAKNKPIKEFLQQRTDEFDGFDVALGKLKS  455
            L+++ EE++L++++GEY+ G + + D A+    ++K  L Q   ++ +FD +L+ +++
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

88) VPBB_1528 in NC_019955


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  310 bits (1161),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 194/432 (45%), Positives = 303/432 (71%), Gaps = 8/432 (1%)

Query  15   IKQTRLIQIRGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLA--EVVGFQQHHAL  72
            +K  RL+Q  +   ++TG II A + +V +GELCE+R   +   ++A  +VVG+Q+++++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  73   LTPLGNMFGISSNTEVSPMGKMHEVGVGDHLLGKILDGLGR---PFDGAQSQEPSAWYPV  129
            L+ +GN  G+S +  + P G+     VG  +LG +LD  G+    F    +  +     V
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE--RV  118

Query  130  YRDAPPPMQRKL-IEKPISLGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSADV  188
               APP+   ++ +  P+  GVR+IDGLLTCG GQRMGIFA+AG GK+ L+  LI  ++ 
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  189  DVTVLALIGERGREVREFIEHDLGEEGMARSVLVVATSDRPAMERAKAAFVATSIAEYFR  248
            DV V++LIGERGREV EF++   + +   + VLV ATSD P+++R +AA +AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  249  DQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSIT  308
            DQGKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G +  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  309  ALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVEPN  368
            A+YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+  P 
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  369  HQASAAHLREMLAKYEEVELLIKIGEYQHGADPRADLAIAQSDDIRAFLRQGTHEPSDLE  428
            H   A+ +R ++++ EE++L+I +GEY+ G +   D A+   D ++A L Q   + S ++
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  429  GAIAQLKGIAGQ  440
            ++++ ++++A+Q
Sbjct  419  DTLSGMNAFADQ  430

89) fliI in NC_021848


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  309 bits (1160),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 194/432 (45%), Positives = 303/432 (71%), Gaps = 8/432 (1%)

Query  15   IKQTRLIQIRGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLA--EVVGFQQHHAL  72
            +K  RL+Q  +   ++TG II A + +V +GELCE+R   +   ++A  +VVG+Q+++++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  73   LTPLGNMFGISSNTEVSPMGKMHEVGVGDHLLGKILDGLGR---PFDGAQSQEPSAWYPV  129
            L+ +GN  G+S +  + P G+     VG  +LG +LD  G+    F    +  +     V
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE--RV  118

Query  130  YRDAPPPMQRKL-IEKPISLGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSADV  188
               APP+   ++ +  P+  GVR+IDGLLTCG GQRMGIFA+AG GK+ L+  LI  ++ 
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  189  DVTVLALIGERGREVREFIEHDLGEEGMARSVLVVATSDRPAMERAKAAFVATSIAEYFR  248
            DV V++LIGERGREV EF++   + +   + VLV ATSD P+++R +AA +AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  249  DQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSIT  308
            DQGKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G +  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  309  ALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVEPD  368
            A+YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+  P 
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  369  HQASAAHLREMLAKYEEVELLIKIGEYQHGADPRADLAIAQSDDIRAFLRQGTHEPSDLE  428
            H   A+ +R ++++ EE++L+I +GEY+ G +   D A+   D ++A L Q   + S ++
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  429  GAIAQLKGIAGQ  440
            ++++ ++++A+Q
Sbjct  419  DTLSGMNAFADQ  430

90) fliI in NC_021847


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  308 bits (1155),  Expect = 4e-85, Method: Compositional matrix adjust.
 Identities = 194/432 (45%), Positives = 303/432 (71%), Gaps = 8/432 (1%)

Query  15   IKQTRLIQIRGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLA--EVVGFQQHHAL  72
            +K  RL+Q  +   ++TG II A + +V +GELCE+R   +   ++A  +VVG+Q+++++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  73   LTPLGNMFGISSNTEVSPMGKMHEVGVGDHLLGKILDGLGR---PFDGAQSQDPSSWYPV  129
            L+ +GN  G+S +  + P G+     VG  +LG +LD  G+    F    +  +     V
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE--RV  118

Query  130  YRDAPPPMQRKL-IEKPISLGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSADI  188
               APP+   ++ +  P+  GVR+IDGLLTCG GQRMGIFA+AG GK+ L+  LI  ++ 
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  189  DVTVLALIGERGREVREFIEHDLGEEGMARSVLVVATSDRPAMERAKAAFVATSIAEYFR  248
            DV V++LIGERGREV EF++   + +   + VLV ATSD P+++R +AA +AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  249  DQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSIT  308
            DQGKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G +  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  309  ALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVEPD  368
            A+YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+  P 
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  369  HQASAAHLREMLAKYEEVELLIKIGEYQHGADPRADLAIAQSDDIRAFLRQGSHEPSDLE  428
            H   A+ +R ++++ EE++L+I +GEY+ G +   D A+   D ++A L Q   + S ++
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  429  GAIAQLKGIAGQ  440
            ++++ ++++A+Q
Sbjct  419  DTLSGMNAFADQ  430

91) fliI in NC_022269


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  308 bits (1155),  Expect = 5e-85, Method: Compositional matrix adjust.
 Identities = 194/431 (46%), Positives = 301/431 (70%), Gaps = 8/431 (1%)

Query  15   IKQTRLIQIRGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLA--EVVGFQQHHAL  72
            +K  RL+Q  +   ++TG II A + +V +GELCE+R   +   ++A  +VVG+Q+++++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  73   LTPLGNMFGISSNTEVSPLGKMHEVGVGDHLLGKILDGLGR---PFDGSQSTEPSAWYPV  129
            L+ +GN  G+S +  + P G+     VG  +LG +LD  G+    F    +  +     V
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE--RV  118

Query  130  YRDAPPPMQRKL-IEKPISMGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSADV  188
               APP+   ++ +  P+  GVR+IDGLLTCG GQRMGIFA+AG GK+ L+  LI  ++ 
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  189  DVTVLALIGERGREVREFIEHDLGEEGMARSVLVVATSDRPAMERAKAAFVATSIAEYFR  248
            DV V++LIGERGREV EF++   + +   + VLV ATSD P+++R +AA +AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  249  DQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSIT  308
            DQGKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G +  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  309  ALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVDKT  368
            A+YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+   T
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  369  HQAPAAHMREMLAKYEEVELLIKIGEYQHGADSRADMAIAQGDDIRAFLRQGTHEPSELE  428
            H   A+ +R ++++ EE++L+I +GEY+ G +   D A+   D ++A L Q   + S ++
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  429  ETVTQLRGLAG  439
            +T++ + ++A+
Sbjct  419  DTLSGMNAFAD  429

92) VIBHAR_01730 in NC_009783


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  308 bits (1155),  Expect = 5e-85, Method: Compositional matrix adjust.
 Identities = 194/431 (46%), Positives = 301/431 (70%), Gaps = 8/431 (1%)

Query  15   IKQTRLIQIRGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLA--EVVGFQQHHAL  72
            +K  RL+Q  +   ++TG II A + +V +GELCE+R   +   ++A  +VVG+Q+++++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  73   LTPLGNMFGISSNTEVSPLGKMHEVGVGDHLLGKILDGLGR---PFDGSQSTEPSAWYPV  129
            L+ +GN  G+S +  + P G+     VG  +LG +LD  G+    F    +  +     V
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE--RV  118

Query  130  YRDAPPPMQRKL-IEKPISMGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSADV  188
               APP+   ++ +  P+  GVR+IDGLLTCG GQRMGIFA+AG GK+ L+  LI  ++ 
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  189  DVTVLALIGERGREVREFIEHDLGEEGMARSVLVVATSDRPAMERAKAAFVATSIAEYFR  248
            DV V++LIGERGREV EF++   + +   + VLV ATSD P+++R +AA +AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  249  DQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSIT  308
            DQGKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G +  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  309  ALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVDKT  368
            A+YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+   T
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  369  HQAPAAHMREMLAKYEEVELLIKIGEYQHGADSRADMAIAQGDDIRAFLRQGTHEPSELE  428
            H   A+ +R ++++ EE++L+I +GEY+ G +   D A+   D ++A L Q   + S ++
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  429  ETVTQLRGLAG  439
            +T++ + ++A+
Sbjct  419  DTLSGMNAFAD  429

93) yscN in NC_008791


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  307 bits (1149),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 192/417 (47%), Positives = 300/417 (72%), Gaps = 8/417 (1%)

Query  17   GSRLIQIRGRVTQVTGTLLKAVVPGVRIGELCYLRN--PDNSLSLQAEVIGFAQHQALLI  74
             +RL+Q  +   ++TG ++ A + +V IGELC +R    ++ +  +A+V+G+ +++++L 
Sbjct  3    TPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLS  62

Query  75   PLGEMYGISSNTEVSPTGTMHQVGVGEHLLGQVLDGLG---QPFDGGHLPEPAAWYPVYQ  131
             +G+  G+S +  + PTG      VG  +LG VLD  G   + F     P +  +  V +
Sbjct  63   LIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VID  120

Query  132  DAPAPMSRKL-ITTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190
             AP++ + ++ +  PL  G+R IDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  191  TVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQ  250
             V++LIGERGREV EF++   + +   K VLV ATSD PS++R +A+ +AT++AEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  251  GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITAL  310
            GKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +S GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  311  YTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHK  370
            YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+ +  H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  371  TWAGDLRRLLAKYEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELSHF  427
              A+ +R+L+++ EE++L++++GEY+ G++ + D+A++  +++++WLCQ   + S F
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

94) yscN in NC_010157


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  307 bits (1149),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 192/417 (47%), Positives = 300/417 (72%), Gaps = 8/417 (1%)

Query  17   GSRLIQIRGRVTQVTGTLLKAVVPGVRIGELCYLRN--PDNSLSLQAEVIGFAQHQALLI  74
             +RL+Q  +   ++TG ++ A + +V IGELC +R    ++ +  +A+V+G+ +++++L 
Sbjct  3    TPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLS  62

Query  75   PLGEMYGISSNTEVSPTGTMHQVGVGEHLLGQVLDGLG---QPFDGGHLPEPAAWYPVYQ  131
             +G+  G+S +  + PTG      VG  +LG VLD  G   + F     P +  +  V +
Sbjct  63   LIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VID  120

Query  132  DAPAPMSRKL-ITTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190
             AP++ + ++ +  PL  G+R IDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  191  TVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQ  250
             V++LIGERGREV EF++   + +   K VLV ATSD PS++R +A+ +AT++AEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  251  GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITAL  310
            GKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +S GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  311  YTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHK  370
            YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+ +  H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  371  TWAGDLRRLLAKYEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELSHF  427
              A+ +R+L+++ EE++L++++GEY+ G++ + D+A++  +++++WLCQ   + S F
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

95) YPA_CD0022 in NC_008122


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  307 bits (1149),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 192/417 (47%), Positives = 300/417 (72%), Gaps = 8/417 (1%)

Query  17   GSRLIQIRGRVTQVTGTLLKAVVPGVRIGELCYLRN--PDNSLSLQAEVIGFAQHQALLI  74
             +RL+Q  +   ++TG ++ A + +V IGELC +R    ++ +  +A+V+G+ +++++L 
Sbjct  3    TPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLS  62

Query  75   PLGEMYGISSNTEVSPTGTMHQVGVGEHLLGQVLDGLG---QPFDGGHLPEPAAWYPVYQ  131
             +G+  G+S +  + PTG      VG  +LG VLD  G   + F     P +  +  V +
Sbjct  63   LIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VID  120

Query  132  DAPAPMSRKL-ITTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190
             AP++ + ++ +  PL  G+R IDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  191  TVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQ  250
             V++LIGERGREV EF++   + +   K VLV ATSD PS++R +A+ +AT++AEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  251  GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITAL  310
            GKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +S GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  311  YTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHK  370
            YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+ +  H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  371  TWAGDLRRLLAKYEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELSHF  427
              A+ +R+L+++ EE++L++++GEY+ G++ + D+A++  +++++WLCQ   + S F
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

96) yscN in NC_005813


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  307 bits (1149),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 192/417 (47%), Positives = 300/417 (72%), Gaps = 8/417 (1%)

Query  17   GSRLIQIRGRVTQVTGTLLKAVVPGVRIGELCYLRN--PDNSLSLQAEVIGFAQHQALLI  74
             +RL+Q  +   ++TG ++ A + +V IGELC +R    ++ +  +A+V+G+ +++++L 
Sbjct  3    TPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLS  62

Query  75   PLGEMYGISSNTEVSPTGTMHQVGVGEHLLGQVLDGLG---QPFDGGHLPEPAAWYPVYQ  131
             +G+  G+S +  + PTG      VG  +LG VLD  G   + F     P +  +  V +
Sbjct  63   LIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VID  120

Query  132  DAPAPMSRKL-ITTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190
             AP++ + ++ +  PL  G+R IDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  191  TVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQ  250
             V++LIGERGREV EF++   + +   K VLV ATSD PS++R +A+ +AT++AEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  251  GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITAL  310
            GKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +S GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  311  YTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHK  370
            YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+ +  H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  371  TWAGDLRRLLAKYEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELSHF  427
              A+ +R+L+++ EE++L++++GEY+ G++ + D+A++  +++++WLCQ   + S F
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

97) yscN in NC_003131


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  307 bits (1149),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 192/417 (47%), Positives = 300/417 (72%), Gaps = 8/417 (1%)

Query  17   GSRLIQIRGRVTQVTGTLLKAVVPGVRIGELCYLRN--PDNSLSLQAEVIGFAQHQALLI  74
             +RL+Q  +   ++TG ++ A + +V IGELC +R    ++ +  +A+V+G+ +++++L 
Sbjct  3    TPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLS  62

Query  75   PLGEMYGISSNTEVSPTGTMHQVGVGEHLLGQVLDGLG---QPFDGGHLPEPAAWYPVYQ  131
             +G+  G+S +  + PTG      VG  +LG VLD  G   + F     P +  +  V +
Sbjct  63   LIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VID  120

Query  132  DAPAPMSRKL-ITTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190
             AP++ + ++ +  PL  G+R IDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  191  TVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQ  250
             V++LIGERGREV EF++   + +   K VLV ATSD PS++R +A+ +AT++AEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  251  GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITAL  310
            GKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +S GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  311  YTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHK  370
            YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+ +  H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  371  TWAGDLRRLLAKYEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELSHF  427
              A+ +R+L+++ EE++L++++GEY+ G++ + D+A++  +++++WLCQ   + S F
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

98) YPDSF_3977 in NC_009377


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  307 bits (1149),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 192/417 (47%), Positives = 300/417 (72%), Gaps = 8/417 (1%)

Query  17   GSRLIQIRGRVTQVTGTLLKAVVPGVRIGELCYLRN--PDNSLSLQAEVIGFAQHQALLI  74
             +RL+Q  +   ++TG ++ A + +V IGELC +R    ++ +  +A+V+G+ +++++L 
Sbjct  3    TPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLS  62

Query  75   PLGEMYGISSNTEVSPTGTMHQVGVGEHLLGQVLDGLG---QPFDGGHLPEPAAWYPVYQ  131
             +G+  G+S +  + PTG      VG  +LG VLD  G   + F     P +  +  V +
Sbjct  63   LIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VID  120

Query  132  DAPAPMSRKL-ITTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190
             AP++ + ++ +  PL  G+R IDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  191  TVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSLERAKAGFVATSIAEYFRDQ  250
             V++LIGERGREV EF++   + +   K VLV ATSD PS++R +A+ +AT++AEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  251  GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITAL  310
            GKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +S GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  311  YTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHK  370
            YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+ +  H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  371  TWAGDLRRLLAKYEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELSHF  427
              A+ +R+L+++ EE++L++++GEY+ G++ + D+A++  +++++WLCQ   + S F
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

99) pYV0067 in NC_006153


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  307 bits (1149),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 192/417 (47%), Positives = 300/417 (72%), Gaps = 8/417 (1%)

Query  17   GSRLIQIRGRVTQVTGTLLKAVVPGVRIGELCYLRN--PDNSLSLQAEVIGFAQHQALLI  74
             +RL+Q  +   ++TG ++ A + +V IGELC +R    ++ +  +A+V+G+ +++++L 
Sbjct  3    TPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLS  62

Query  75   PLGEMYGISSNTEVSPTGTMHQVGVGEHLLGQVLDGLG---QPFDGGHLPEPAAWYPVYQ  131
             +G+  G+S +  + PTG      VG  +LG VLD  G   + F     P +  +  V +
Sbjct  63   LIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VID  120

Query  132  DAPAPMSRKL-ITTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190
             AP++ + ++ +  PL  G+R IDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  191  TVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQ  250
             V++LIGERGREV EF++   + +   K VLV ATSD PS++R +A+ +AT++AEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  251  GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITAL  310
            GKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +S GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  311  YTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHK  370
            YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+ +  H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  371  TWAGDLRRLLAKYEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELSHF  427
              A+ +R+L+++ EE++L++++GEY+ G++ + D+A++  +++++WLCQ   + S F
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

100) YPTS_4285 in NC_010635


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  307 bits (1149),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 192/417 (47%), Positives = 300/417 (72%), Gaps = 8/417 (1%)

Query  17   GSRLIQIRGRVTQVTGTLLKAVVPGVRIGELCYLRN--PDNSLSLQAEVIGFAQHQALLI  74
             +RL+Q  +   ++TG ++ A + +V IGELC +R    ++ +  +A+V+G+ +++++L 
Sbjct  3    TPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLS  62

Query  75   PLGEMYGISSNTEVSPTGTMHQVGVGEHLLGQVLDGLG---QPFDGGHLPEPAAWYPVYQ  131
             +G+  G+S +  + PTG      VG  +LG VLD  G   + F     P +  +  V +
Sbjct  63   LIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VID  120

Query  132  DAPAPMSRKL-ITTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190
             AP++ + ++ +  PL  G+R IDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  191  TVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQ  250
             V++LIGERGREV EF++   + +   K VLV ATSD PS++R +A+ +AT++AEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  251  GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITAL  310
            GKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +S GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  311  YTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHK  370
            YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+ +  H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  371  TWAGDLRRLLAKYEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELSHF  427
              A+ +R+L+++ EE++L++++GEY+ G++ + D+A++  +++++WLCQ   + S F
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

101) VP1668 in NC_004603


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  307 bits (1150),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 194/432 (45%), Positives = 303/432 (71%), Gaps = 8/432 (1%)

Query  15   IKQTRLIQIRGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLA--EVVGFQQHHAL  72
            +K  RL+Q  +   ++TG II A + +V +GELCE+R   +   ++A  +VVG+Q+++++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  73   LTPLGNMFGISSNTEVSPMGKMHEVGVGDHLLGKILDGLGR---PFDGAQSQEPSAWYPV  129
            L+ +GN  G+S +  + P G+     VG  +LG +LD  G+    F    +  +     V
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE--RV  118

Query  130  YRDAPPPMQRKL-IEKPISLGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSADV  188
               APP+   ++ +  P+  GVR+IDGLLTCG GQRMGIFA+AG GK+ L+  LI  ++ 
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  189  DVTVLALIGERGREVREFIEHDLGEDGMARSVLVVATSDRPAMERAKAAFVATSIAEYFR  248
            DV V++LIGERGREV EF++   + +   + VLV ATSD P+++R +AA +AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  249  DQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSIT  308
            DQGKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G +  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  309  ALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVEPD  368
            A+YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+  P 
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  369  HQAYAAHLREMLAKYEEVELLIKIGEYQHGADPRADLAIAQSDDIRAFLRQGTHEPSDLE  428
            H   A+ +R ++++ EE++L+I +GEY+ G +   D A+   D ++A L Q   + S ++
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  429  GAIAQLKGIAGQ  440
            ++++ ++++A+Q
Sbjct  419  DTLSGMNAFADQ  430

102) Y11_p0781 in NC_017565


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  306 bits (1146),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 192/417 (47%), Positives = 300/417 (72%), Gaps = 8/417 (1%)

Query  17   GSRLIQIRGRVTQVTGTLLKAVVPGVRIGELCYLRN--PDNSLSLQAEVIGFAQHQALLI  74
             +RL+Q  +   ++TG ++ A + +V IGELC +R    ++ +  +A+V+G+ +++++L 
Sbjct  3    TPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLS  62

Query  75   PLGEMYGISSNTEVSPTGTMHQVGVGEHLLGQVLDGLG---QPFDGGHLPEPAAWYPVYQ  131
             +G+  G+S +  + PTG      VG  +LG VLD  G   + F     P +  +  V +
Sbjct  63   LIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VID  120

Query  132  DAPAPMSRKL-ITTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190
             AP++ + ++ +  PL  G+R IDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  191  TVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQ  250
             V++LIGERGREV EF++   + +   K VLV ATSD PS++R +A+ +AT++AEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  251  GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITAL  310
            GKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +S GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  311  YTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHK  370
            YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+ +  H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  371  TWAGDLRRLLAKYEEVELLLQIGEYQKGQDKEADQAIERIGAIRGWLCQGTHELSHF  427
              A+ +R+L+++ EE++L++++GEY+ G++ + D+A++  +++++WLCQ   + S F
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

103) ascN in NC_009350


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  306 bits (1147),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 195/425 (46%), Positives = 304/425 (72%), Gaps = 6/425 (1%)

Query  25   RLIQIRGRVTQVTGTLLKAVVPGVRIGELCHLRN--PDNTLSLQAEVIGFAQHQALLTPL  82
            RL+Q  +   ++TG ++ A + +V IGELC++R    ++ +  +A+V+G+ +++++L+ +
Sbjct  5    RLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLI  64

Query  83   GEMFGISSNTEVSPTGAMHQVGVGEHLLGQVLDGLGN---PFGGGHLPEPEAWYPVYRDA  139
            G+  G+S +  + PTG      VG  +LG VLD  G+    F     P +E +  +   +
Sbjct  65   GNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER-VIDVAP  123

Query  140  PAPMSRKRIAEPISLGIRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVL  199
            P+  SR  + EP+  G+RAIDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV V+
Sbjct  124  PSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVI  183

Query  200  ALIGERGREVREFIEADLGEEGLKKAVLVVATSDRPAMERAKAGFVATSIAEYFRDQGKR  259
            +LIGERGREV EF++   + +   K VLV ATSD P+++R +A+ +AT++AEYFRDQGKR
Sbjct  184  GLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKR  243

Query  260  VLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDKGSITALYTV  319
            V+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +  GSITA+YTV
Sbjct  244  VVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTV  303

Query  320  LVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIIEPEHQAQA  379
            L+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+  P H  QA
Sbjct  304  LLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQA  363

Query  380  GRLRSWLAKYEEVELLLQIGEYQKGQDKVADEAIARIETIRQWLRQGTHEPSSLPEALST  439
            + +R  +++ EE++L++++GEY+ G++   D A+   ++++ WL Q   + SS+ ++LS 
Sbjct  364  SAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSG  423

Query  440  LEALT  444
            ++A++
Sbjct  424  MNAFA  428

104) sctN in NC_005126


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  306 bits (1146),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 195/425 (46%), Positives = 305/425 (72%), Gaps = 6/425 (1%)

Query  20   RLIQIRGRVTQVTGTLLKAVIPGVRIGELCHLRN--PDNTLSLLAEVIGFQQHQALLTPL  77
            RL+Q  +   ++TG ++ A + +V IGELC++R    ++ +   A+V+G+Q+++++L+ +
Sbjct  5    RLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLI  64

Query  78   GEMFGISSNTEVSPTGAMHQVGVGDYLLGQVLDGLG---NPFSGGQLPEPQAWYPVYRDA  134
            G+  G+S +  + PTG      VG  +LG VLD  G   + F+    P ++ +  +   +
Sbjct  65   GNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER-VIDVAP  123

Query  135  PAPMSRKRIEHPLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLSTLIRSAEVDVTVL  194
            P+  SR  + +PL  GVRAIDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV V+
Sbjct  124  PSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVI  183

Query  195  ALIGERGREVREFIESDLGEEGLKRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGKR  254
            +LIGERGREV EF++   + +   + VLV ATSD P+++R +A+ +AT++AEYFRDQGKR
Sbjct  184  GLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKR  243

Query  255  VLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDKGSITALYTV  314
            V+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +  GSITA+YTV
Sbjct  244  VVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTV  303

Query  315  LVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIITPEHQAQA  374
            L+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+ TP H  QA
Sbjct  304  LLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQA  363

Query  375  GLLRKWLAKYEEVELLLQIGEYQKGQDPVADNAIAHIEAIRNWLRQGTHEPSDLPQTLAQ  434
            + +RK +++ EE++L++++GEY+ G++   D A+   ++++ WL Q   + S + +TL+ 
Sbjct  364  SAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSG  423

Query  435  LQQIT  439
            ++ ++
Sbjct  424  MNAFA  428

105) yscN in NC_017153


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  304 bits (1138),  Expect = 8e-84, Method: Compositional matrix adjust.
 Identities = 189/404 (47%), Positives = 293/404 (73%), Gaps = 8/404 (1%)

Query  1    MTGTLLKAVVPGVRIGELCYLRN--PDNSLSLQAEVIGFAQHQALLIPLGEMYGISSNTE  58
            +TG ++ A + +V IGELC +R    ++ +  +A+V+G+ +++++L  +G+  G+S +  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  59   VSPTGTMHQVGVGEHLLGQVLDGLG---QPFDGGHLPEPAAWYPVYQDAPAPMSRKL-IT  114
            + PTG      VG  +LG VLD  G   + F     P +  +  V + AP++ + ++ + 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGVR  133

Query  115  TPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREV  174
             PL  G+R IDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV V++LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  175  REFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTR  234
             EF++   + +   K VLV ATSD PS++R +A+ +AT++AEYFRDQGKRV+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  235  FARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTEP  294
            +ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +S GSITA+YTVL+E+++ ++P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  295  VADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAKY  354
            +ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+ +  H   A+ +R+L+++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  355  EEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELSHF  398
            EE++L++++GEY+ G++ + D+A++  +++++WLCQ   + S F
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

106) yscN in NC_017157


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  304 bits (1138),  Expect = 8e-84, Method: Compositional matrix adjust.
 Identities = 189/404 (47%), Positives = 293/404 (73%), Gaps = 8/404 (1%)

Query  1    MTGTLLKAVVPGVRIGELCYLRN--PDNSLSLQAEVIGFAQHQALLIPLGEMYGISSNTE  58
            +TG ++ A + +V IGELC +R    ++ +  +A+V+G+ +++++L  +G+  G+S +  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  59   VSPTGTMHQVGVGEHLLGQVLDGLG---QPFDGGHLPEPAAWYPVYQDAPAPMSRKL-IT  114
            + PTG      VG  +LG VLD  G   + F     P +  +  V + AP++ + ++ + 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGVR  133

Query  115  TPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREV  174
             PL  G+R IDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV V++LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  175  REFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTR  234
             EF++   + +   K VLV ATSD PS++R +A+ +AT++AEYFRDQGKRV+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  235  FARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTEP  294
            +ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +S GSITA+YTVL+E+++ ++P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  295  VADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAKY  354
            +ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+ +  H   A+ +R+L+++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  355  EEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELSHF  398
            EE++L++++GEY+ G++ + D+A++  +++++WLCQ   + S F
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

107) yscN in NC_014017


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  304 bits (1138),  Expect = 8e-84, Method: Compositional matrix adjust.
 Identities = 189/404 (47%), Positives = 293/404 (73%), Gaps = 8/404 (1%)

Query  1    MTGTLLKAVVPGVRIGELCYLRN--PDNSLSLQAEVIGFAQHQALLIPLGEMYGISSNTE  58
            +TG ++ A + +V IGELC +R    ++ +  +A+V+G+ +++++L  +G+  G+S +  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  59   VSPTGTMHQVGVGEHLLGQVLDGLG---QPFDGGHLPEPAAWYPVYQDAPAPMSRKL-IT  114
            + PTG      VG  +LG VLD  G   + F     P +  +  V + AP++ + ++ + 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGVR  133

Query  115  TPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREV  174
             PL  G+R IDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV V++LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  175  REFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTR  234
             EF++   + +   K VLV ATSD PS++R +A+ +AT++AEYFRDQGKRV+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  235  FARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTEP  294
            +ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +S GSITA+YTVL+E+++ ++P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  295  VADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAKY  354
            +ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+ +  H   A+ +R+L+++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  355  EEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELSHF  398
            EE++L++++GEY+ G++ + D+A++  +++++WLCQ   + S F
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

108) sctN in NC_012962


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  304 bits (1138),  Expect = 9e-84, Method: Compositional matrix adjust.
 Identities = 194/427 (46%), Positives = 307/427 (72%), Gaps = 6/427 (1%)

Query  20   RLIQIRGRVTQVTGTLLKAVIPGVRIGELCHLRN--PDNTLSLLAEVIGFQQHQALLTPL  77
            RL+Q  +   ++TG ++ A + +V IGELC++R    ++ +   A+V+G+Q+++++L+ +
Sbjct  5    RLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLI  64

Query  78   GEMFGISSNTEVSPTGAMHQVGVGDYLLGQILDGLG---NPFSGGQLPEPQAWYPVYRDA  134
            G+  G+S +  + PTG      VG  +LG +LD  G   + F+    P ++ +  +   +
Sbjct  65   GNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER-VIDVAP  123

Query  135  PAPMSRKRIEHPLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLSTLIRNAEVDVTVL  194
            P+  SR  + +PL  GVRAIDGLLTCG GQRMGIFA+AG GK+ L+  LI ++E DV V+
Sbjct  124  PSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVI  183

Query  195  ALIGERGREVREFIESDLGEEGLKRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGKR  254
            +LIGERGREV EF++   + +   + VLV ATSD P+++R +A+ +AT++AEYFRDQGKR
Sbjct  184  GLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKR  243

Query  255  VLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDKGSITALYTV  314
            V+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +  GSITA+YTV
Sbjct  244  VVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTV  303

Query  315  LVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMSQIITPEHQAQA  374
            L+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV +Q+ TP H  QA
Sbjct  304  LLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQA  363

Query  375  NLLRHWLAKYEEVELLLQIGEYQKGQDPVADNAIAHIEAIRGWLRQGTHEPSDLPQTLVL  434
            + +R  +++ EE++L++++GEY+ G++   D A+   +++++WL Q   + S + +TL  
Sbjct  364  SAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSG  423

Query  435  LQQITKQ  441
            ++ ++ Q
Sbjct  424  MNAFADQ  430

109) YE105_P0022 in NC_015475


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  303 bits (1135),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 189/404 (47%), Positives = 293/404 (73%), Gaps = 8/404 (1%)

Query  1    MTGTLLKAVVPGVRIGELCYLRN--PDNSLSLQAEVIGFAQHQALLIPLGEMYGISSNTE  58
            +TG ++ A + +V IGELC +R    ++ +  +A+V+G+ +++++L  +G+  G+S +  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  59   VSPTGTMHQVGVGEHLLGQVLDGLG---QPFDGGHLPEPAAWYPVYQDAPAPMSRKL-IT  114
            + PTG      VG  +LG VLD  G   + F     P +  +  V + AP++ + ++ + 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGVR  133

Query  115  TPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREV  174
             PL  G+R IDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E DV V++LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  175  REFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTR  234
             EF++   + +   K VLV ATSD PS++R +A+ +AT++AEYFRDQGKRV+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  235  FARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTEP  294
            +ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +S GSITA+YTVL+E+++ ++P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  295  VADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAKY  354
            +ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+ +  H   A+ +R+L+++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  355  EEVELLLQIGEYQKGQDKEADQAIERIGAIRGWLCQGTHELSHF  398
            EE++L++++GEY+ G++ + D+A++  +++++WLCQ   + S F
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

110) hrcN in NC_015856


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  302 bits (1133),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 188/414 (46%), Positives = 300/414 (73%), Gaps = 4/414 (0%)

Query  31   IIGTLLKVGGLDATLGELCELREA--DGRLVQRAEVVGFTRQFALLAPFGSVVGLSRSTR  88
            I G ++     D ++GELCE+R +  + ++V RA+VVG+ R+ ++L+ +G+  GLSR   
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  89   VVGQGRPLSVPVGPALMGRVLDGLGEPLDRLGA-IETKEFRSVIAPAPDPLTRRM-IEEP  146
            +   GR+LS  VG +++G VLD  G  ++R+ + +       VI  AP + + R+ + EP
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  147  LDTGVRVIDGLMTIGEGQRVGIFAPAGVGKSTLLGMLARGADCDVNVVVLIGERGREVRE  206
            L TGVR IDGL+T G GQR+GIFA+AG GK+ L+ ML   ++ DV V+ LIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  207  FIELILGKEGMAKSVVVCATSDRSSIERAKAAYVGTAIAEYFRDQGMRVLLMMDSLTRFA  266
            F++++ + +   K V+V ATSD +S++R +AA ++T++AEYFRDQG RV+L +DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  267  RAQREIGLSAGEPPTRRGFPPSIFAELPRLLERAGMGSTGSITAFYTVLAEDEEGNDPVS  326
            RA R+++L++GE P+RRG+P+S+F +LPRLLER+G  S GSITAFYTVL E EE  DP++
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  327  EEVRGILDGHIVLSRAIAARNHYPAIDVLNSLSRVMTLVASSAHCNGAGRIRKLMSKFNE  386
            +E+R+ILDGH+ LSR +A++ HYPAIDVL+S+SRV   V++++H + A+ +RKLM++++E
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  387  IELLLQIGEYQQGTDPLADEAVSHHDAIEQFLIQSTDEEAPGAHTHAIVSQFSS  440
            ++L++++GEY+ G +   D A+  +D++   L Q+  + ++  +T + ++ F+ 
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

111) yscN in NC_015717


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  300 bits (1123),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 183/414 (45%), Positives = 292/414 (71%), Gaps = 8/414 (1%)

Query  36   QVLGTIIKATVPGARIGDLCILHNPSDGSEL--PAEVVGLTRDSAILTPLGDLGGVSTLT  93
            ++ G II A + +  IG+LC ++   +  ++   A+VVGL R+ ++L+ +G+  G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  94   EVLPTGKPHMAPAGRALLGRVLDGMGQPLD--IAERGPLRPDAYVSVYADAPDPLTRRV-  150
             + PTG++  A  G ++LG VLD  G+ ++   +E +P+  +  + V   AP + + RV 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV---APPSYASRVG  131

Query  151  IDTPMPLGVRALDGMLTCGEGQRMGIFAAAGGGKSTLMSMLVRGAAVDVTVMALIGERGR  210
            +  P+  GVRA+DG+LTCG GQRMGIFA+AG GK+ LM ML+  +  DV V++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  211  EVREFIERDLGPEGREKSVVVVATSDRSSMERAKAAYVATAIAEWFRNQGMRVLFLMDSV  270
            EV EF++   +++ +EK V+V ATSD +S++R +AA +AT++AE FR+QG RV++++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  271  TRFARAQREIGLAAGEPPTRRGFPPSVFATLPKLMERVGNNDKGSITAFYTVLVEGDDMS  330
            TR+ARA R+++LA+GE P+RRG+P+SVF  LP+L+ER G    GSITAFYTVL+E+++ +
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  331  EPIADETRSILDGHIVLSRALSAANHFPAIDVLASASRVMGAIASSEHRALAGRIRTLMA  390
            +P+ADE RSILDGH+ LSR L++  H+PAIDVL S SRV G ++++ H   A+ +R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  391  KYNEVELLVRIGEYKPGSDKVADEAVKKIEHIRSFLKQNAQDPVGFNDVLKQMA  444
            + +E++L++ +GEY+PG +   D A++  + +++ L Q   +  +F+D L  M 
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

112) HCH_03268 in NC_007645


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  300 bits (1125),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 182/416 (44%), Positives = 305/416 (74%), Gaps = 10/416 (2%)

Query  40   GTIVKASVNGVRIGEICELVDPESQRSILA--EVIGFSRQEALLTPLSEMEGLSAHTEVI  97
            G I+ A + +V IGE+CE+     Q+ ++A  +V+G+ R+ ++L+ +++ +GLS +  + 
Sbjct  18   GPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLY  77

Query  98   PTGRSHEIQISEGILGRVLDGLGAPID----DGEPLTGGVPYPIISASPNPLTRRL-VET  152
            PTGR+    ++ ++LG VLD  G  ++    +  P++      +I  +P + + R+ V  
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE---RVIDVAPPSYASRVGVRE  134

Query  153  PMTTGVRAIDGMLTCGEGQRMGVFAAAGVGKSTLLSMITRHTDADIVVIGLIGERGREVR  212
            P+ TGVRAIDG+LTCG GQRMG+FA+AG GK+ L+ M+  +T+AD+ VIGLIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  213  GFIERDLGAEGMQRAVVVAATSDRPAMERVKAGYVATAIAEHFRDQGKRVLLLIDSVTRF  272
             F++   +++  ++ V+V ATSD P+++R +A+ +AT++AE FRDQGKRV+L+IDS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  273  ARALREIGLAAGEPPARRGFPPTVFATLPKLLERAGPGAKGAISALYTVLVEGDDMTEPV  332
            ARALR+++LA+GE PARRG+P++VF  LP+LLER+G+ + G+I+A+YTVL+E+++ ++P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  333  ADEVRSILDGHIVLSRALAESGHFPAVDILASSSRLMNDIATPEqlqqarrlrqllarYK  392
            ADE+RSILDGH+ LSR LA  GH+PA+D+L S SR+  +++TP + +QA  +R+L++R  
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  393  EIELLVRIGEYQPGTDPLADAAIKAIEPINQFLRQHDGAPCSMADTLAQLQSLAQH  448
            E++L++ +GEY+PG +   D A++  ++++  L Q  +   S  DTL+ ++++A++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQ  430

113) PAM18_3349 in NC_017548


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  299 bits (1121),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 187/406 (47%), Positives = 293/406 (73%), Gaps = 4/406 (0%)

Query  19   QVTGTLLKAVVPGVRIGELCQLRN--PDQSLALLAEVIGFQQHQALLTPLGEMLGVSSNT  76
            ++TG ++ A + +V IGELC++R    ++ +   A+V+G+Q+++++L+ +G+  G+S + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  77   EVSPTGGMHRVAVGEHLLGQVLDGLGRPFDG-SPPAEPAAWYPVYRDAPPPMSRRLIER-  134
             + PTG      VG  +LG VLD  G+  +  +P   P +   V   APP+ + R+  R 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  135  PLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTVLALVGERGREVR  194
            PL  GVRAIDGLLTCG GQRMGIFA+AG GK+ L+  L+ ++E DV V++L+GERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  195  EFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLLLMDSLTRF  254
            EF++   + +   + VLV ATSD P+++R +A+ +AT++AEYFRDQG+RV+L++DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  255  ARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVEGDDMSEPV  314
            ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +  GSITA+YTVL+E+++ ++P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  315  ADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRLREWLAKYE  374
            ADE RSILDGH+ LSRKLA+  HYPAIDVL SVSRV  Q+    + + A+ +R  +++ E
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  375  EVELLLKIGEYQKGQDSEADRAIEKIAAIRQWLRQGTHETSDYAQA  420
            E++L++ +GEY+ G++ + DRA++   +++ WL Q   + S + ++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

114) hrcN in NC_006834


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  299 bits (1120),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 185/418 (45%), Positives = 297/418 (72%), Gaps = 6/418 (1%)

Query  30   EVVGTMLKVAGVQVSLGEVCELRQ--RDGTLLQRAEVVGFSRDLALLAPFGELIGLSRET  87
             + G ++     +V++GE+CE+R+  ++  ++ RA+VVG+ R+ ++L+ +G+  GLSR+ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   RVIGLGRPLAVPVGAALLGRVLDGLG---EPSDGQGAIACDTWVPIQAQAPDPMRRRLIE  144
             +   GR+L+  VG ++LG VLD  G   E    + A   + +V I+  +P    R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVR  133

Query  145  HPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGREV  204
            +P+ TGVR +DGL+T G GQRMGIFA+AG GK+ LM M+   T+ DV VI LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  205  REFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSLTR  264
             EF++++ +++   + V+V ATSD +S++R +AA ++T++AEYFRD+G RV+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  265  FARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGSDP  324
            +ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G    GSITAFYTVL E +  +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  325  IAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSDHSQAAGRLRRLLAKY  384
            +A+E+R+ILDGHL LSR +A++ +YPAIDVL S+SRV +Q+  + H++ A+ +R+L+++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  385  NEVETLVQVGEYRQGSDAVADEAINRIDAIRDFLSQPTDQLSDYESTLEQLANVTDDA  442
            +E++ ++++GEYR G +   D A++  D+++  L QP  Q S ++ TL  +   +D+ 
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

115) XOO_0085 in NC_007705


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  299 bits (1120),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 185/418 (45%), Positives = 297/418 (72%), Gaps = 6/418 (1%)

Query  30   EVVGTMLKVAGVQVSLGEVCELRQ--RDGTLLQRAEVVGFSRDLALLAPFGELIGLSRET  87
             + G ++     +V++GE+CE+R+  ++  ++ RA+VVG+ R+ ++L+ +G+  GLSR+ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   RVIGLGRPLAVPVGAALLGRVLDGLG---EPSDGQGAIACDTWVPIQAQAPDPMRRRLIE  144
             +   GR+L+  VG ++LG VLD  G   E    + A   + +V I+  +P    R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVR  133

Query  145  HPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGREV  204
            +P+ TGVR +DGL+T G GQRMGIFA+AG GK+ LM M+   T+ DV VI LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  205  REFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSLTR  264
             EF++++ +++   + V+V ATSD +S++R +AA ++T++AEYFRD+G RV+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  265  FARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGSDP  324
            +ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G    GSITAFYTVL E +  +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  325  IAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSDHSQAAGRLRRLLAKY  384
            +A+E+R+ILDGHL LSR +A++ +YPAIDVL S+SRV +Q+  + H++ A+ +R+L+++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  385  NEVETLVQVGEYRQGSDAVADEAINRIDAIRDFLSQPTDQLSDYESTLEQLANVTDDA  442
            +E++ ++++GEYR G +   D A++  D+++  L QP  Q S ++ TL  +   +D+ 
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

116) PXO_03396 in NC_010717


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  299 bits (1120),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 185/418 (45%), Positives = 297/418 (72%), Gaps = 6/418 (1%)

Query  30   EVVGTMLKVAGVQVSLGEVCELRQ--RDGTLLQRAEVVGFSRDLALLAPFGELIGLSRET  87
             + G ++     +V++GE+CE+R+  ++  ++ RA+VVG+ R+ ++L+ +G+  GLSR+ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   RVIGLGRPLAVPVGAALLGRVLDGLG---EPSDGQGAIACDTWVPIQAQAPDPMRRRLIE  144
             +   GR+L+  VG ++LG VLD  G   E    + A   + +V I+  +P    R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVR  133

Query  145  HPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGREV  204
            +P+ TGVR +DGL+T G GQRMGIFA+AG GK+ LM M+   T+ DV VI LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  205  REFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSLTR  264
             EF++++ +++   + V+V ATSD +S++R +AA ++T++AEYFRD+G RV+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  265  FARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGSDP  324
            +ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G    GSITAFYTVL E +  +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  325  IAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSDHSQAAGRLRRLLAKY  384
            +A+E+R+ILDGHL LSR +A++ +YPAIDVL S+SRV +Q+  + H++ A+ +R+L+++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  385  NEVETLVQVGEYRQGSDAVADEAINRIDAIRDFLSQPTDQLSDYESTLEQLANVTDDA  442
            +E++ ++++GEYR G +   D A++  D+++  L QP  Q S ++ TL  +   +D+ 
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

117) PA1697 in NC_002516


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  298 bits (1115),  Expect = 6e-82, Method: Compositional matrix adjust.
 Identities = 186/406 (46%), Positives = 293/406 (73%), Gaps = 4/406 (0%)

Query  30   QVTGTLLKAVVPGVRIGELCQLRN--PDQSLALLAEVIGFQQHQALLTPLGEMLGVSSNT  87
            ++TG ++ A + +V IGELC++R    ++ +   A+V+G+Q+++++L+ +G+  G+S + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   EVSPTGGMHRVAVGEHLLGQVLDGLGRPFDG-SPPAEPAAWYPVYRDAPQPMSRRLIER-  145
             + PTG      VG  +LG VLD  G+  +  +P   P +   V   AP + + R+  R 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  146  PLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTVLALVGERGREVR  205
            PL  GVRAIDGLLTCG GQRMGIFA+AG GK+ L+  L+ ++E DV V++L+GERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  206  EFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLLLMDSLTRF  265
            EF++   + +   + VLV ATSD P+++R +A+ +AT++AEYFRDQG+RV+L++DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  266  ARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVEGDDMSEPV  325
            ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +  GSITA+YTVL+E+++ ++P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  326  ADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRLREWLAKYE  385
            ADE RSILDGH+ LSRKLA+  HYPAIDVL SVSRV  Q+    + + A+ +R  +++ E
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  386  EVELLLKIGEYQKGQDSEADRAIEKIGAIRQWLRQGTHETSDYAQA  431
            E++L++ +GEY+ G++ + DRA++  ++++ WL Q   + S + ++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

118) sctN in NC_020127


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  297 bits (1111),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 183/412 (45%), Positives = 298/412 (73%), Gaps = 4/412 (0%)

Query  27   EQVIGTIIRAVVPGVKIGELCELRNPWDNWTL--QAEVVGFVKHVALLTPLGDLQGISPS  84
            +++ G II A + +V IGELCE+R  W++  +  +A+VVG+ ++ ++L+ +G+ QG+S  
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   TEVIPTGMVHAIPVGRELLGRVLNGLGEPIDGKAP--LRLRTYYPVYADPPNPMLRRIIE  142
              + PTG   +  VG  +LG VL+  G  ++  +P    +     +   PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  143  KPISLGLRVLDGILTCGEGQRMGIFAAAGGGKSTLLSSIIKGTTADVCILALIGERGREV  202
             P+  G+R +DG+LTCG GQRMGIFA+AG GK+ L+  +I  T ADV +++LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  203  REFIEHDLGAEGLKRSVLVVSTSDRSSMERLKSAYTATAIAEYFRDQGKKVLLLMDSVTR  262
             EF++   +++   + VLV +TSD +S++R ++A  AT++AEYFRDQGK+V+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  263  FGRALREIGLASGEPPTRRGFPPSVFSSLPKLMERAGNSDKGSITALYTVLVEGDDMTEP  322
            ++RALR+++LASGE P+RRG+P+SVF +LP+L+ER+G +  GSITA+YTVL+E+++ ++P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  323  IADETRSILDGHIILSRKLAAANHYPAVDVLASVSRVMNAIVTKEHKENAGKLRKYLAKY  382
            +ADE RSILDGH+ LSRKLA+  HYPA+DVL SVSRV   + T  H E+A+ +RK +++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  383  AEVELLVQIGEYKAGNDPAADDAIKHNKGINAFLQQGLDEKSTFEQTLQALK  434
             E++L++++GEY++G++   D A++   +++A L Q + + S+F++TL +++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

119) sctN in NC_008011


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  297 bits (1111),  Expect = 1e-81, Method: Compositional matrix adjust.
 Identities = 183/412 (45%), Positives = 298/412 (73%), Gaps = 4/412 (0%)

Query  27   EQVIGTIIRAVVPGVKIGELCELRNPWDNWTL--QAEVVGFVKHVALLTPLGDLQGISPS  84
            +++ G II A + +V IGELCE+R  W++  +  +A+VVG+ ++ ++L+ +G+ QG+S  
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   TEVIPTGMVHAIPVGRELLGRVLNGLGEPIDGKAP--LRLRTYYPVYADPPNPMLRRIIE  142
              + PTG   +  VG  +LG VL+  G  ++  +P    +     +   PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  143  KPISLGLRVLDGILTCGEGQRMGIFAAAGGGKSTLLSSIIKGTTADVCILALIGERGREV  202
             P+  G+R +DG+LTCG GQRMGIFA+AG GK+ L+  +I  T ADV +++LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  203  REFIEHDLGAEGLKRSVLVVSTSDRSSMERLKSAYTATAIAEYFRDQGKKVLLLMDSVTR  262
             EF++   +++   + VLV +TSD +S++R ++A  AT++AEYFRDQGK+V+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  263  FGRALREIGLASGEPPTRRGFPPSVFSSLPKLMERAGNSDKGSITALYTVLVEGDDMTEP  322
            ++RALR+++LASGE P+RRG+P+SVF +LP+L+ER+G +  GSITA+YTVL+E+++ ++P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  323  IADETRSILDGHIILSRKLAAANHYPAVDVLASVSRVMNAIVTKEHKENAGKLRKYLAKY  382
            +ADE RSILDGH+ LSRKLA+  HYPA+DVL SVSRV   + T  H E+A+ +RK +++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  383  AEVELLVQIGEYKAGNDPAADDAIKHNKGINAFLQQGLDEKSTFEQTLQALK  434
             E++L++++GEY++G++   D A++   +++A L Q + + S+F++TL +++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

120) PLES_36301 in NC_011770


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  297 bits (1114),  Expect = 8e-82, Method: Compositional matrix adjust.
 Identities = 185/406 (46%), Positives = 294/406 (73%), Gaps = 4/406 (0%)

Query  30   QVTGTLLKAVVPGVRIGELCQLRN--PDQSLALLAEVIGFQQHQALLTPLGEMLGVSSNT  87
            ++TG ++ A + +V IGELC++R    ++ +   A+V+G+Q+++++L+ +G+  G+S + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   EVSPTGGMHRVAVGEHLLGRVLDGLGRPFDG-SPPAEPAAWYPVYRDAPPPMSRRLIER-  145
             + PTG      VG  +LG VLD  G+  +  +P   P +   V   APP+ + R+  R 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  146  PLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTILALVGERGREVR  205
            PL  GVRAIDGLLTCG GQRMGIFA+AG GK+ L+  L+ ++E DV +++L+GERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  206  EFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLLLMDSLTRF  265
            EF++   + +   + VLV ATSD P+++R +A+ +AT++AEYFRDQG+RV+L++DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  266  ARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVEGDDMSEPV  325
            ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +  GSITA+YTVL+E+++ ++P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  326  ADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRLREWLAKYE  385
            ADE RSILDGH+ LSRKLA+  HYPAIDVL SVSRV  Q+    + + A+ +R  +++ E
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  386  EVELLLKIGEYQKGQDSEADQAIEKIGAIRQWLRQGTHETSDYAQA  431
            E++L++ +GEY+ G++ + D+A++  ++++ WL Q   + S + ++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

121) G655_16695 in NC_020912


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  296 bits (1109),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 185/406 (46%), Positives = 293/406 (73%), Gaps = 4/406 (0%)

Query  30   QVTGTLLKAVVPGVRIGELCQLRN--PDQSLALLAEVIGFQQHQALLTPLGEMLGVSSNT  87
            ++TG ++ A + +V IGELC++R    ++ +   A+V+G+Q+++++L+ +G+  G+S + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   EVSPTGGMHRVAVGEHLLGQVLDGLGRPFDG-SPPAEPAAWYPVYRDAPQPMSRRLIER-  145
             + PTG      VG  +LG VLD  G+  +  +P   P +   V   AP + + R+  R 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  146  PLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTVLALVGERGREVR  205
            PL  GVRAIDGLLTCG GQRMGIFA+AG GK+ L+  L+ ++E DV V++L+GERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  206  EFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLLLMDSLTRF  265
            EF++   + +   + VLV ATSD P+++R +A+ +AT++AEYFRDQG+RV+L++DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  266  ARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVEGDDMSEPV  325
            ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +  GSITA+YTVL+E+++ ++P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  326  ADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRLREWLAKYE  385
            ADE RSILDGH+ LSRKLA+  HYPAIDVL SVSRV  Q+    + + A+ +R  +++ E
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  386  EVELLLKIGEYQKGQDSEADQAIEKIGAIRQWLRQGTHETSDYAQA  431
            E++L++ +GEY+ G++ + D+A++  ++++ WL Q   + S + ++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

122) PADK2_17215 in NC_018080


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  296 bits (1109),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 185/406 (46%), Positives = 293/406 (73%), Gaps = 4/406 (0%)

Query  30   QVTGTLLKAVVPGVRIGELCQLRN--PDQSLALLAEVIGFQQHQALLTPLGEMLGVSSNT  87
            ++TG ++ A + +V IGELC++R    ++ +   A+V+G+Q+++++L+ +G+  G+S + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   EVSPTGGMHRVAVGEHLLGQVLDGLGRPFDG-SPPAEPAAWYPVYRDAPQPMSRRLIER-  145
             + PTG      VG  +LG VLD  G+  +  +P   P +   V   AP + + R+  R 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  146  PLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTVLALVGERGREVR  205
            PL  GVRAIDGLLTCG GQRMGIFA+AG GK+ L+  L+ ++E DV V++L+GERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  206  EFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLLLMDSLTRF  265
            EF++   + +   + VLV ATSD P+++R +A+ +AT++AEYFRDQG+RV+L++DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  266  ARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVEGDDMSEPV  325
            ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +  GSITA+YTVL+E+++ ++P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  326  ADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRLREWLAKYE  385
            ADE RSILDGH+ LSRKLA+  HYPAIDVL SVSRV  Q+    + + A+ +R  +++ E
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  386  EVELLLKIGEYQKGQDSEADQAIEKIGAIRQWLRQGTHETSDYAQA  431
            E++L++ +GEY+ G++ + D+A++  ++++ WL Q   + S + ++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

123) pscN in NC_017549


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  296 bits (1108),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 185/406 (46%), Positives = 293/406 (73%), Gaps = 4/406 (0%)

Query  19   QVTGTLLKAVVPGVRIGELCQLRN--PDQSLALLAEVIGFQQHQALLTPLGEMLGVSSNT  76
            ++TG ++ A + +V IGELC++R    ++ +   A+V+G+Q+++++L+ +G+  G+S + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  77   EVSPTGGMHRVAVGEHLLGQVLDGLGRPFDG-SPPAEPAAWYPVYRDAPQPMSRRLIER-  134
             + PTG      VG  +LG VLD  G+  +  +P   P +   V   AP + + R+  R 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  135  PLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTVLALVGERGREVR  194
            PL  GVRAIDGLLTCG GQRMGIFA+AG GK+ L+  L+ ++E DV V++L+GERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  195  EFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLLLMDSLTRF  254
            EF++   + +   + VLV ATSD P+++R +A+ +AT++AEYFRDQG+RV+L++DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  255  ARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVEGDDMSEPV  314
            ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +  GSITA+YTVL+E+++ ++P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  315  ADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRLREWLAKYE  374
            ADE RSILDGH+ LSRKLA+  HYPAIDVL SVSRV  Q+    + + A+ +R  +++ E
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  375  EVELLLKIGEYQKGQDSEADQAIEKIGAIRQWLRQGTHETSDYAQA  420
            E++L++ +GEY+ G++ + D+A++  ++++ WL Q   + S + ++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

124) pscN in NC_008463


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  296 bits (1109),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 185/406 (46%), Positives = 293/406 (73%), Gaps = 4/406 (0%)

Query  30   QVTGTLLKAVVPGVRIGELCQLRN--PDQSLALLAEVIGFQQHQALLTPLGEMLGVSSNT  87
            ++TG ++ A + +V IGELC++R    ++ +   A+V+G+Q+++++L+ +G+  G+S + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   EVSPTGGMHRVAVGEHLLGQVLDGLGRPFDG-SPPAEPAAWYPVYRDAPQPMSRRLIER-  145
             + PTG      VG  +LG VLD  G+  +  +P   P +   V   AP + + R+  R 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  146  PLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTVLALVGERGREVR  205
            PL  GVRAIDGLLTCG GQRMGIFA+AG GK+ L+  L+ ++E DV V++L+GERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  206  EFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLLLMDSLTRF  265
            EF++   + +   + VLV ATSD P+++R +A+ +AT++AEYFRDQG+RV+L++DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  266  ARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVEGDDMSEPV  325
            ARA R+++LA+GE P+RRGYP+SVF  LPRL+ER+G +  GSITA+YTVL+E+++ ++P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  326  ADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRLREWLAKYE  385
            ADE RSILDGH+ LSRKLA+  HYPAIDVL SVSRV  Q+    + + A+ +R  +++ E
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  386  EVELLLKIGEYQKGQDSEADQAIEKIGAIRQWLRQGTHETSDYAQA  431
            E++L++ +GEY+ G++ + D+A++  ++++ WL Q   + S + ++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

125) yscN in NC_007645


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  296 bits (1109),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 186/414 (45%), Positives = 290/414 (71%), Gaps = 9/414 (2%)

Query  29   NVVGTIIRAIVPGAQIGELC-----YLESAGAPRLLAEVVGFQEKEALLTPMGDMLGIST  83
            ++ G II A + +  IGELC       +    +R  A+VVG+Q   ++L+ +G+  G+S 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVAR--AQVVGLQRERTVLSLIGNAQGLSR  72

Query  84   ATEVITTGQSHHIAVGPHLLGRVLDGMGAPMDGKNADFPSDLQHYPVYADAPSPMMRRM-  142
               +  TG++    VG  +LG VLD  G  ++   ++ ++  ++  V   AP++   R+ 
Sbjct  73   DVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRVG  131

Query  143  ISEPLSLGVRALDGLLTCGEGQRMGVFAAAGGGKSTLLSMLVMGADVDVIVIALIGERGR  202
            + EPL  GVRA+DGLLTCG GQRMG+FA+AG GK+ L+ ML+  ++ DV+VI+LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  203  EVREFIEHNLGPEGLARSVLVISTSDRPSMERAKAAYVATTIAEYFRDQGQKVLLLMDSV  262
            EV EF++   +++   + VLV++TSD PS++R +AA +ATT+AEYFRDQG++V+L++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  263  TRFARAQREIGLAAGEPPTRRGFPPSVFATLPKLLERVGFNDKGSITALYTVLVEGDDMS  322
            TR+ARA R+++LA+GE P+RRG+P+SVF  LP+LLER G    GSITA+YTVL+E+++ +
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  323  EPIADEVRSILDGHIVLSRKLAATNHYPAIDVLASTSRVMTAITSPEHRQAAGKMRELMA  382
            +P+ADE+RSILDGH+ LSRKLA+  HYPAIDVL S SRV   +T+P H + A+ +R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  383  KYVDVELLVKIGEYQRGSDPVADEAIAKIDRIRGFLKQATDEKCDFQTTLNALA  436
            +  +++L++ +GEY+ G +   D A+   D +++ L Q+  +   F+ TL+++ 
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

126) N646_0736 in NC_022349


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  296 bits (1107),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 197/432 (46%), Positives = 301/432 (70%), Gaps = 8/432 (1%)

Query  15   IKHTRLIQIRGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLA--EVVGFQQHHAL  72
            +K  RL+Q  +   ++TG II A + +V +GELCE+R   +   ++A  +VVG+Q+++++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  73   LTPLGNMFGISSNTEVSPMGKMHEvgvgdhllgttldglgR---PFDGTQSQEPSAWYPV  129
            L+ +GN  G+S +  + P G+     VG  +LG+ LD  G+    F    +  +     V
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE--RV  118

Query  130  YRDAPPPMQRKL-IEKPISLGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSAEV  188
               APP+   ++ +  P+  GVR+IDGLLTCG GQRMGIFA+AG GK+ L+  LI  +E 
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  189  DVTVLALIGERGREVREFIEHDLGEEGMAKSVLVVATSDRPAMERAKAAFVATSIAEYFR  248
            DV V++LIGERGREV EF++   + +   K VLV ATSD P+++R +AA +AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  249  DQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSIT  308
            DQGKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G +  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  309  ALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVEPD  368
            A+YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+  P 
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  369  HQASAAHIREMLAKYEEVELLIKIGEYQHGADSRADLAIAQSDDIRAFLRQGTHEPSDLD  428
            H   A+ +R ++++ EE++L+I +GEY+ G +   D A+   D ++A L Q   + S +D
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  429  GAIAQLKGMAKQ  440
            ++++ +++ A Q
Sbjct  419  DTLSGMNAFADQ  430

127) VEA_003366 in NC_013456


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  295 bits (1105),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 194/432 (45%), Positives = 302/432 (70%), Gaps = 8/432 (1%)

Query  15   IRQTRLIQIRGRVTQVTGTIIKAVVPGVRVGELCELRNPDQTLSLLA--EVVGFQQHHAL  72
            ++  RL+Q  +   ++TG II A + +V +GELCE+R   +   ++A  +VVG+Q+++++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  73   LTPLGNMFGISSNTEVSPMGKMHEvgvgdqllgttldglgR---PFDGTQSQEPSAWYPV  129
            L+ +GN  G+S +  + P G+     VG  +LG+ LD  G+    F    +  +     V
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE--RV  118

Query  130  YRDAPPPMQRKL-IEKPISLGVRSIDGLLTCGEGQRMGIFAAAGGGKSTLLAKLIRSADV  188
               APP+   ++ +  P+  GVR+IDGLLTCG GQRMGIFA+AG GK+ L+  LI  ++ 
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  189  DVTVLALIGERGREVREFIEHDLGEEGMAKSVLVVATSDRPAMERAKAAFVATSIAEYFR  248
            DV V++LIGERGREV EF++   + +   K VLV ATSD P+++R +AA +AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  249  DQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPKLMERAGQSDKGSIT  308
            DQGKRV+L++DS+TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G +  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  309  ALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAMNHYPAIDVLRSASRVMNQIVEPD  368
            A+YTVL+E+++ ++P+ADE RSILDGH+ LSRKLA+  HYPAIDVL+S SRV  Q+  P 
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  369  HQASAAHLREMLAKYEEVELLLKIGEYQHGADSRADMAIAQSDDIRAFLRQGTHEPSDLD  428
            H   A+ +R ++++ EE++L++ +GEY+ G +   D A+   D ++A L Q   + S +D
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  429  GAIAQLKGMANQ  440
            ++++ +++ A+Q
Sbjct  419  DTLSGMNAFADQ  430

128) xsaS in NC_013722


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  294 bits (1102),  Expect = 6e-81, Method: Compositional matrix adjust.
 Identities = 206/415 (50%), Positives = 300/415 (73%), Gaps = 21/415 (5%)

Query  16   ISGQTLRVRLRNVAVGEICTVYQSTFSGEPIGMAQVVALSGDTTVLSTLNPVEGFRRDFV  75
            I+G  +   LR+VA+GE+C + ++    + ++ AQVV+L  + TVLS +   +G+ RD V
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  76   VQPTGKRATVRMSVDMLGTVLDANGRIVERFSESPDAPVGEKSDSPCIANTNGAPFSDEP  135
            + PTG+  + +++  +LG+VLD+ G+IVERF+                   + AP+S+E 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFT------------------PEVAPISEER  117

Query  136  QEMPLDVAGPRYTDRNPHAESLWTGIRAIDGLLTCAIGQRVGIFaaagsgkssllsmlvg  195
                +DVA P Y+ R    E+L TG+RAIDGLLTC++GQR+GIFA+AG GK+ L+ ML+ 
Sbjct  118  ---VIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIE  174

Query  196  gIDADVAIVALIGERGREVSEFVEKMRHSQRADQLIVVYATSDQSaveranaakvamaaa  255
              +ADV +++LIGERGREV+EFV+ +R S++ ++ ++V+ATSD ++V+R NAA++A + A
Sbjct  175  QTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVA  234

Query  256  EFYRDRGMHVVVYLDSLTRYARAERDIALASGEVPVKRGYPLSVFDRLPKLIERAGRIHV  315
            E++RD+G +VV+++DS+TRYARA RD+ALASGE P +RGYP SVFD LP+L+ER+G    
Sbjct  235  EYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE  294

Query  316  GSITAFYTVLLESEEEADMVADEFRSLLDGHIYLSRGLAETHHYPSIDVLKSASRLFNAV  375
            GSITAFYTVLLESEEEAD +ADE+RS+LDGH+YLSR LA   HYP+IDVLKS SR+F  V
Sbjct  295  GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQV  354

Query  376  TDEQQQMMAAAFRKQLARYQELQVYIDMGEYQRGTNAENDRIVDGYAQMRQFLIQ  430
            T   +   A+A RK ++R +ELQ++ID+GEY+ G N +NDR ++    ++  L Q
Sbjct  355  TTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQ  409

129) Bcenmc03_5939 in NC_010515


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  291 bits (1089),  Expect = 7e-80, Method: Compositional matrix adjust.
 Identities = 184/401 (46%), Positives = 290/401 (73%), Gaps = 4/401 (0%)

Query  51   DVRYGELCELRTG--QGELMQCAEVVGFSRDTALLSPFGRLDGLSRDTQVVALRRPLAIP  108
            DV  GELCE+R G  Q +++  A+VVG+ R+ ++LS +G  +GLSRD  + +  R+L+  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  109  VGSALFGRVVDSMGRPID--GRGPIDTTETAALYAAPPDAMSRPLLERSLDTGVRVVDGL  166
            VG +++G V+D+ G+ ++         +E   +  APP   SR  +  +L TGVR +DGL
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  167  MTLGEGQRVGIFAPAGVGKSTLMGMFARGTRCDLNVIALIGERGREVREFIEQILGPEGI  226
            +T G GQR+GIFA+AG GK+ LM M+   T  D+ VI+LIGERGREV EF++ + +++  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  227  ARSIVVCATSDRSSIERVKAAYSATAIAEYFRDRGKRVLLMMDSLTRFARAQREIGLAAG  286
             + ++V ATSD +S++R +AA  AT++AEYFRD+GKRV+L +DS+TR+ARA R+++LA+G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  287  EPPARRGFPPSIFAELPRLLERAGLSEHGSITALYTVLAEDESGSDPVAEEVRGILDGHM  346
            E PARRG+P+S+F +LPRLLER+G + +GSITA+YTVL E E  +DP+A+E+R+ILDGH+
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  347  ILSREIAARNQYPAIDVLASLSRVMPQVTDDAHREAAGHVRRLLAKHRDIETLLQLGEYR  406
             LSR +A++ +YPAIDVL S+SRV  QVT  +H E A+ VR+L+++  +++ +++LGEYR
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  407  AGGDPVADEAVRKIEAIRQFLCQRTDEFSTREATRDALRGL  447
            +G +   D A++  ++++  LCQ   ++S+ + T  ++ ++
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

130) NT01EI_0957 in NC_012779


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  291 bits (1088),  Expect = 8e-80, Method: Compositional matrix adjust.
 Identities = 174/410 (43%), Positives = 292/410 (72%), Gaps = 11/410 (2%)

Query  32   TIGATLLRAHLPGVGLGEQCTLPDG-------SPAEVVAIEGDQALLSPYQPPLGLANGM  84
             I + ++ A+L +V++GE C +  G       + A+VV+++ ++++LS    + GL+ ++
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  85   LVTPLGAQACIGVSEALLGRVIDALGQPADGKPP--AQATQWRSLDSPPPDPMQRAPIDT  142
            ++ P G      V+ ++LG V+D+ G+  +   P  A  ++ R +D +PP    R  +  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  143  LLPMGVRAIDATLSVGVGQRLGIFSPAGCGKSTLLGMMATNSQADVVILALIGERGREVR  202
             L  GVRAID+ L+ GVGQR+GIF++AGCGK+ L+ M+  +++ADV +++LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  203  EFLEQIMSPELRARSVVILATSDRPALERIKAADTATVIAEYFRDRGHNVLLLVDSLTRY  262
            EF++ + +++ + + V+++ATSD P+++R +AA+ AT +AEYFRD+G  V+L++DS+TRY
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  263  ARAIREIALAAGEPTVSGGYPPSLYARLPRLLERAGPAACGSITAFYTVLV--EQKSDPL  320
            ARA+R++ALA+GE     GYP+S++  LPRLLER+G+++ GSITAFYTVL+  E+ +DP+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  321  AEEVRSLLDGHIVLSRRLAEASHYPAIDIMASISRVMSQIVTPQHRQAANRLRHLMATWQ  380
            A+E+RS+LDGH+ LSR+LA  +HYPAID++ S+SRV +Q+ TP H + A+ +R LM+  +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  381  EIALLVRVGEYRAGQDTDADEAIARREAIDNLLCQKTDEHCPLAPTLSAL  430
            E+ L++ +GEYR+G++ D D A+  R+++   LCQ   +  ++  TLS++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

131) bglu_2g02440 in NC_012721


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  290 bits (1086),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 189/407 (47%), Positives = 290/407 (72%), Gaps = 8/407 (1%)

Query  38   VVGTVIKVSGLDVTLGELCELRA--PDGTLLQRAEVVGFTRDVALLSPFSRLENVSRATQ  95
            + G +I     DV++GELCE+R    +  ++ RA+VVG+ R+ ++LS ++  + +SR   
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  96   VIGLGRPLSIQVGDQLLGRVLDGLGEPID----GGPPLDSDDWRPVIVQPPDPMKRRMVD  151
            +   GR+LS  VG  +LG VLD  G  ++      +P+  +  R + V PP    R  V 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE--RVIDVAPPSYASRVGVR  133

Query  152  TPMPTGVRVVDAMMTLGEGQRMGIFAPAGVGKSTLMGMFARGAACDINVIALIGERGREV  211
             P+ TGVR +D+++T G GQRMGIFA+AG GK+ LM M+   +  D+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  212  REFIELILGPEGMARSVVVCATSDRSSMERakaahtataiaEYFRDRGLRVLLMMDSLTR  271
             EF++++ +++   + V+V ATSD +S++R +AA+ AT++AEYFRD+G RV+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  272  FARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGATGSITALYTVLAEDETGGDP  331
            +ARA R+++LA+GE PARRG+P+SVF +LPRLLER G  + GSITA+YTVL E E  +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  332  VAEEVRGILDGHMILSREIAAKNQYPAIDVLGSLSRVMSLVVPDAHARAASRIRELMAKH  391
            +A+E+R+ILDGH+ LSR +A++ +YPAIDVL S+SRV + V   +HA  AS +R LM++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  392  REVEVLLQVGEYQPGQNPLADEAIQKADAIRAFLCQRTRDYAPYDET  438
             E+++++++GEY+PG+N   D A+Q  D+++A LCQ   +Y+++D+T
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

132) bgla_2g02830 in NC_015376


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 188/407 (47%), Positives = 287/407 (71%), Gaps = 8/407 (1%)

Query  40   VVGTVIKVSGLDVTLGELCELRS--PEGVLLQRAEVVGFTRDVALLSPFARLEHVSRATQ  97
            + G +I     DV++GELCE+R    +  ++ RA+VVG+ R+ ++LS ++  + +SR   
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  98   VIGLGRPLSIQVGDQLLGRVLDGLGEPID----GGPPLDSDDWRPVIVQPPDPMKRRMVD  153
            +   GR+LS  VG  +LG VLD  G  ++      +P+  +  R + V PP    R  V 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE--RVIDVAPPSYASRVGVR  133

Query  154  TPMPTGVRVVDAMMTLGEGQRMGIFAPAGVGKSTLMGMFARGAACDINVIALIGERGREV  213
             P+ TGVR +D+++T G GQRMGIFA+AG GK+ LM M+   +  D+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  214  REFIELILGPDGMARSVVVCATSDRSSMERakaahtataiaEYFRDRGLRVLLMMDSLTR  273
             EF++++ +++   + V+V ATSD +S++R +AA+ AT++AEYFRD+G RV+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  274  FARAGREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGQTGSITALYTVLAEDETGGDP  333
            +ARA R+++LA+GE PARRG+P+SVF +LPRLLER G    GSITA+YTVL E E  +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  334  VAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMSLVVPDTHNRAASRVRELMAKH  393
            +A+E+R+ILDGH+ LSR +A++ +YPAIDVL S+SRV + V   TH   AS VR LM++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  394  REVEVLLQVGEYQPGQNPVADEAIEKADVIREFLCQRTSDYAPYEDT  440
             E+++++++GEY+PG+N   D A++  D ++  LCQ  ++Y++++DT
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

133) hrcN in NC_003919


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  288 bits (1078),  Expect = 5e-79, Method: Compositional matrix adjust.
 Identities = 184/417 (45%), Positives = 299/417 (72%), Gaps = 6/417 (1%)

Query  31   LVGTMLKVAGVQVSLGEVCELRQ--RDGTLLQRAEVVGFSRDLALLAPFGELVGLSRETR  88
            + G ++     +V++GE+CE+R+  ++  ++ RA+VVG+ R+ ++L+ +G+  GLSR+  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  89   VIGLGRPLAVPVGPALLGRVLDGLG---EPSDGQGAIACDTWVPIQAQAPDPMRRRLIEQ  145
            +   GR+L+  VG ++LG VLD  G   E    + A   + +V I+  +P    R  + +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVRE  134

Query  146  PMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGREVR  205
            P+ TGVR +DGL+T G GQRMGIFA+AG GK+ LM M+   T+ DV VI LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  206  EFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSLTRF  265
            EF++++ +++   + V+V ATSD +S++R +AA ++T++AEYFRD+G RV+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  266  ARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGSDPI  325
            ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G    GSITAFYTVL E +  +DP+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  326  AEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSDHSQAAGRLRRLLAKYN  385
            A+E+R+ILDGHL LSR +A++ +YPAIDVL S+SRV +Q+  + H++ A+ +R+L+++ +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  386  EVETLVQVGEYRQGSdavadeaidridairdFLSQPTDRLSAYESTLEQLASVTDDA  442
            E++ ++++GEYR G +   D A++  D+++  L QP  + S+++ TL  + + +D+ 
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

134) XAC29_02110 in NC_020800


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  288 bits (1078),  Expect = 5e-79, Method: Compositional matrix adjust.
 Identities = 184/417 (45%), Positives = 299/417 (72%), Gaps = 6/417 (1%)

Query  31   LVGTMLKVAGVQVSLGEVCELRQ--RDGTLLQRAEVVGFSRDLALLAPFGELVGLSRETR  88
            + G ++     +V++GE+CE+R+  ++  ++ RA+VVG+ R+ ++L+ +G+  GLSR+  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  89   VIGLGRPLAVPVGPALLGRVLDGLG---EPSDGQGAIACDTWVPIQAQAPDPMRRRLIEQ  145
            +   GR+L+  VG ++LG VLD  G   E    + A   + +V I+  +P    R  + +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVRE  134

Query  146  PMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGREVR  205
            P+ TGVR +DGL+T G GQRMGIFA+AG GK+ LM M+   T+ DV VI LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  206  EFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSLTRF  265
            EF++++ +++   + V+V ATSD +S++R +AA ++T++AEYFRD+G RV+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  266  ARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGSDPI  325
            ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G    GSITAFYTVL E +  +DP+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  326  AEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSDHSQAAGRLRRLLAKYN  385
            A+E+R+ILDGHL LSR +A++ +YPAIDVL S+SRV +Q+  + H++ A+ +R+L+++ +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  386  EVETLVQVGEYRQGSdavadeaidridairdFLSQPTDRLSAYESTLEQLASVTDDA  442
            E++ ++++GEYR G +   D A++  D+++  L QP  + S+++ TL  + + +D+ 
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

135) hrcN in NC_020815


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  288 bits (1078),  Expect = 5e-79, Method: Compositional matrix adjust.
 Identities = 184/417 (45%), Positives = 299/417 (72%), Gaps = 6/417 (1%)

Query  31   LVGTMLKVAGVQVSLGEVCELRQ--RDGTLLQRAEVVGFSRDLALLAPFGELVGLSRETR  88
            + G ++     +V++GE+CE+R+  ++  ++ RA+VVG+ R+ ++L+ +G+  GLSR+  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  89   VIGLGRPLAVPVGPALLGRVLDGLG---EPSDGQGAIACDTWVPIQAQAPDPMRRRLIEQ  145
            +   GR+L+  VG ++LG VLD  G   E    + A   + +V I+  +P    R  + +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVRE  134

Query  146  PMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGREVR  205
            P+ TGVR +DGL+T G GQRMGIFA+AG GK+ LM M+   T+ DV VI LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  206  EFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSLTRF  265
            EF++++ +++   + V+V ATSD +S++R +AA ++T++AEYFRD+G RV+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  266  ARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGSDPI  325
            ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G    GSITAFYTVL E +  +DP+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  326  AEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSDHSQAAGRLRRLLAKYN  385
            A+E+R+ILDGHL LSR +A++ +YPAIDVL S+SRV +Q+  + H++ A+ +R+L+++ +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  386  EVETLVQVGEYRQGSdavadeaidridairdFLSQPTDRLSAYESTLEQLASVTDDA  442
            E++ ++++GEYR G +   D A++  D+++  L QP  + S+++ TL  + + +D+ 
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

136) DvMF_2435 in NC_011769


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  288 bits (1077),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 185/410 (46%), Positives = 287/410 (70%), Gaps = 4/410 (0%)

Query  33   IIRAVVPGVKVGELCILRNPWENWTL--RAEVVGFVKQVALLTPLGDLQGVSPATEVIPT  90
            II A + +V +GELC +R  W++  +  RA+VVG+ ++ ++L+ +G+ QG+S    + PT
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  91   GEILSIPVGEDLLGRVLDGLGEPMDG-GPPLKPRTRYPVYAQPPNPMQRRIIDR-PISLG  148
            G  LS  VG  +LG VLD  G  ++   P + P +   V   +P +   R+  R P+  G
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITG  139

Query  149  LRVLDGVLTCGEGQRMGIFAAAGGGKSTLLSSIIKGCSADVCVLALIGERGREVREFIEH  208
            +R +DG+LTCG GQRMGIFA+AG GK+ L+  +I    ADV V++LIGERGREV EF++ 
Sbjct  140  VRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDM  199

Query  209  DLGPEGRKKAVLVVSTSDRSSMERLKAAYTATAIAEYFRDQRRSVLLMMDSVTRFGRAQR  268
              +++ + K VLV +TSD +S++R +AA  AT++AEYFRDQ + V+L +DS+TR++RA R
Sbjct  200  LRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALR  259

Query  269  EIGLAAGEPPTRRGFPPSVFSTLPRLMERAGNSDKGSITALYTVLVEGDDMTEPIADETR  328
            +++LA+GE P+RRG+P+SVF  LPRL+ER+G +  GSITA+YTVL+E+++ ++P+ADE R
Sbjct  260  DVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIR  319

Query  329  SILDGHIVLSRKLAAANHYPAIDVQASVSRVMNAIVDKEHKAAAQKLRKVLAKYAEVELL  388
            SILDGH+ LSRKLA+  HYPAIDV  SVSRV   +    H   A  +RK++++  E++L+
Sbjct  320  SILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLF  379

Query  389  VQIGEYKRGSDKEADEALDRVAAVNAFLRQGLDERSGFDDTLAALRKVVE  438
            +++GEY+ G + + D A++   +++A L Q + + S+FDDTL+++    +
Sbjct  380  IDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

137) hrcN in NC_016010


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  288 bits (1077),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 185/418 (45%), Positives = 299/418 (72%), Gaps = 6/418 (1%)

Query  30   EVVGTMLKVAGVQVSLGEVCELRQ--RDGSLLQRAEVVGFSRDLALLAPFGELIGLSRET  87
             + G ++     +V++GE+CE+R+  ++  ++ RA+VVG+ R+ ++L+ +G+  GLSR+ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   RVIGLGRPLAVPVGPALLGRVLDGLG---EPSDGQGAIACDTWVPIQAQAPDPMRRRLIE  144
             +   GR+L+  VG ++LG VLD  G   E    + A   + +V I+  +P    R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVR  133

Query  145  HPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGREV  204
            +P+ TGVR +DGL+T G GQRMGIFA+AG GK+ LM M+   T+ DV VI LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  205  REFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSLTR  264
             EF++++ +++   + V+V ATSD +S++R +AA ++T++AEYFRD+G RV+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  265  FARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGSDP  324
            +ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G    GSITAFYTVL E +  +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  325  IAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSDHSQAAGRLRRLLAKY  384
            +A+E+R+ILDGHL LSR +A++ +YPAIDVL S+SRV +Q+  + H++ A+ +R+L+++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  385  NEVETLVQVGEYRQGSdavadeaidridairdFLSQPTDQLSAYESTLELLASVTDDA  442
            +E++ ++++GEYR G +   D A++  D+++  L QP  Q S+++ TL  + + +D+ 
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

138) hrcN in NC_017271


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  288 bits (1077),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 184/418 (45%), Positives = 296/418 (71%), Gaps = 6/418 (1%)

Query  26   EVIGTMLKVAGAQVSLGEVCELRQ--RDGTLLQRAEVVGFSRTLALLAPFGELVGLSRQT  83
             + G ++     +V++GE+CE+R+  ++  ++ RA+VVG+ R  ++L+ +G+  GLSR+ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  84   RVIGLGRPLAVPVGSALLGRVLDGLGEPAD---GQGPLAGDDWVQIQAQAPDPMRRRLIE  140
             +   GR+L+  VG ++LG VLD  G   +    + +  ++++V I+  +P    R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVR  133

Query  141  QPLPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGREV  200
            +PL TGVR +DGL+T G GQRMGIFA+AG GK+ LM M+   T+ DV VI LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  201  REFIEMILGPDGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGMRVLLMMDSLTR  260
             EF++M+ +++   + V+V ATSD +S++R +AA ++T++AEYFRD+G RV+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  261  FARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGETGSITAFYTVLAEDDTGSDP  320
            +ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G    GSITAFYTVL E +  +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  321  IAEEVRGILDGHLILSREIAARNQYPAIDVLGSLSRVMSQIVSAEQRQYAGQLRRLLAKH  380
            +A+E+R+ILDGHL LSR +A++ +YPAIDVL S+SRV +Q+ ++ + + A+ +R+L+++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  381  NEVETLLQVGEYRHGSdavadeaiaridairdFLSQPTDQLSDYDTILEQLAGVIDDA  438
            +E++ ++++GEYR G +   D A+   D+++  L QP  Q S +D  L  + +  D+ 
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

139) hrcN in NC_010688


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  287 bits (1075),  Expect = 8e-79, Method: Compositional matrix adjust.
 Identities = 184/418 (45%), Positives = 296/418 (71%), Gaps = 6/418 (1%)

Query  26   EVIGTMLKVAGVQVSLGEVCELRQ--RDGTLLQRAEVVGFSRTLALLAPFGELVGLSRQT  83
             + G ++     +V++GE+CE+R+  ++  ++ RA+VVG+ R  ++L+ +G+  GLSR+ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  84   RVIGLGRPLAVPVGSALLGRVLDGLGEPAD---GQGPLAGDDWVQIQAQAPDPMRRRLIE  140
             +   GR+L+  VG ++LG VLD  G   +    + +  ++++V I+  +P    R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVR  133

Query  141  QPLPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGREV  200
            +PL TGVR +DGL+T G GQRMGIFA+AG GK+ LM M+   T+ DV VI LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  201  REFIEMILGPDGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGMRVLLMMDSLTR  260
             EF++M+ +++   + V+V ATSD +S++R +AA ++T++AEYFRD+G RV+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  261  FARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGETGSITAFYTVLAEDDTGSDP  320
            +ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G    GSITAFYTVL E +  +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  321  IAEEVRGILDGHLILSREIAARNQYPAIDVLGSLSRVMSQIVSAEQRQYAGQLRRLLAKH  380
            +A+E+R+ILDGHL LSR +A++ +YPAIDVL S+SRV +Q+ ++ + + A+ +R+L+++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  381  NEVETLLQVGEYRHGSdavadeaiaridairdFLSQPTDQLSDYDTILEQLAGVIDDA  438
            +E++ ++++GEYR G +   D A+   D+++  L QP  Q S +D  L  + +  D+ 
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

140) hrcN in NC_017267


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  286 bits (1072),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 185/418 (45%), Positives = 298/418 (72%), Gaps = 6/418 (1%)

Query  30   EVVGTMLKVAGVQVSLGEVCELRQ--RDGTLLQRAEVVGFSRDLALLAPFGELIGLSRET  87
             + G ++     +V++GE+CE+R+  ++  ++ RA+VVG+ R+ ++L+ +G+  GLSR+ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   RVIGLGRPLAVPVGPALLGRVLDGLG---EPSDGQGAIACDTWVPIQAQAPDPMRRRLIE  144
             +   GR+L+  VG ++LG VLD  G   E    + A   + +V I+  +P    R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVR  133

Query  145  HPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGREV  204
            +P+ TGVR +DGL+T G GQRMGIFA+AG GK+ LM M+   T+ DV VI LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  205  REFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSLTR  264
             EF++++ +++   + V+V ATSD +S++R +AA ++T++AEYFRD+G RV+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  265  FARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGSDP  324
            +ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G    GSITAFYTVL E +  +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  325  IAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPSYHSQAAGRLRRLLAKY  384
            +A+E+R+ILDGHL LSR +A++ +YPAIDVL S+SRV +Q+  + H++ A+ +R+L+++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  385  NEVETLVQVGEYRQGSdavadeaidridairdFLSQPTDQLSDYESTLEQLASVTDNA  442
            +E++ ++++GEYR G +   D A++  D+++  L QP  Q S ++ TL  + + +D+ 
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

141) Bcen2424_4847 in NC_008543


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  286 bits (1071),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 177/404 (44%), Positives = 291/404 (73%), Gaps = 9/404 (2%)

Query  61   LGEICELRTPNQPTLL---AEVVGFSRQTTLLTPLGDVAGLSPETTVVPSGREHVFPVGE  117
            +GE+CE+R   +   +   A+VVG+ R+ T+L+ +G+  GLS +  + P+GR     VG 
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY  89

Query  118  GLFGRVLDGLGRPLD----DRGPVTGAAWVSTQQDPPNPLARKMIDTPFPTGVRVIDGLM  173
            +++G VLD  G+ ++    + +P++       +  PP+  +R  +  P+ TGVR IDGL+
Sbjct  90   SVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  174  TLGIGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVREFIEHSLSPEVRA  233
            T G+GQR+GIFA++G GK+ L+ M+   ++ADV VI+L+GERGREV EF++   +++ + 
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  234  RSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFARAQREVGLASGE  293
            + ++V +TSD P+++R ++A +AT++AE FRD GKRV+L++DS+TR+ARA R+V+LASGE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  294  PPTRRSFPPSTFAVLPRLLERAGQGAHGSITALYTVLVEGDEESDPIAEEVRSILDGHIV  353
             P+RR++P+S F  LPRLLER+G  ++GSITA+YTVL+E++EE+DP+A+E+RSILDGH+ 
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  354  LSRKIALANRYPAIDVLASLSRVMPLVASRAHQHAAARVRELIAKYQEIELLVQIGEYRE  413
            LSRK+A   +YPAIDVL S+SRV   V++ +H + A+ VR L+++ +E++L++++GEYR 
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  414  GSDRLGDLALRARDAIGAFCAQASDEDVRFDALLAKLTKLANDH  457
            G +   D A++ RD++ A   Q+  +   FD  L+ +  +A+++
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

142) bcscN in NC_011001


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  286 bits (1071),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 177/404 (44%), Positives = 291/404 (73%), Gaps = 9/404 (2%)

Query  60   LGEICELRTPNQPTLL---AEVVGFSRQTTLLTPLGDVAGLSPETTVVPSGREHVFPVGE  116
            +GE+CE+R   +   +   A+VVG+ R+ T+L+ +G+  GLS +  + P+GR     VG 
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY  89

Query  117  GLFGRVLDGLGRPLD----DRGPVTGAAWVSTQQDPPNPLARKMIDTPFPTGVRVIDGLM  172
            +++G VLD  G+ ++    + +P++       +  PP+  +R  +  P+ TGVR IDGL+
Sbjct  90   SVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  173  TLGIGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVREFIEHSLSPEVRA  232
            T G+GQR+GIFA++G GK+ L+ M+   ++ADV VI+L+GERGREV EF++   +++ + 
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  233  RSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFARAQREVGLASGE  292
            + ++V +TSD P+++R ++A +AT++AE FRD GKRV+L++DS+TR+ARA R+V+LASGE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  293  PPTRRSFPPSTFAVLPRLLERAGQGAHGSITALYTVLVEGDEESDPIAEEVRSILDGHIV  352
             P+RR++P+S F  LPRLLER+G  ++GSITA+YTVL+E++EE+DP+A+E+RSILDGH+ 
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  353  LSRKIALANRYPAIDVLASLSRVMPLVASRAHQHAAARVRELIAKYQEIELLVQIGEYRE  412
            LSRK+A   +YPAIDVL S+SRV   V++ +H + A+ VR L+++ +E++L++++GEYR 
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  413  GSDRLGDLALRARDAIGAFCAQASDEDVRFDALLAKLTKLANDH  456
            G +   D A++ RD++ A   Q+  +   FD  L+ +  +A+++
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

143) Bcenmc03_5437 in NC_010515


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  286 bits (1072),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 177/404 (44%), Positives = 291/404 (73%), Gaps = 9/404 (2%)

Query  61   LGEICELRTPNQPTLL---AEVVGFSRQTTLLTPLGDVAGLSPETTVVPSGREHVFPVGE  117
            +GE+CE+R   +   +   A+VVG+ R+ T+L+ +G+  GLS +  + P+GR     VG 
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY  89

Query  118  ALFGRVLDGLGRPLD----DRGPVTGAAWVSTQQDPPNPLARKMIDTPFPTGVRVIDGLM  173
            +++G VLD  G+ ++    + +P++       +  PP+  +R  +  P+ TGVR IDGL+
Sbjct  90   SVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  174  TLGIGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVREFIEHSLSPEVRA  233
            T G+GQR+GIFA++G GK+ L+ M+   ++ADV VI+L+GERGREV EF++   +++ + 
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  234  RSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFARAQREVGLASGE  293
            + ++V +TSD P+++R ++A +AT++AE FRD GKRV+L++DS+TR+ARA R+V+LASGE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  294  PPTRRSFPPSTFAVLPRLLERAGQGAHGSITALYTVLVEGDEESDPIAEEVRSILDGHIV  353
             P+RR++P+S F  LPRLLER+G  ++GSITA+YTVL+E++EE+DP+A+E+RSILDGH+ 
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  354  LSRKIALANRYPAIDVLASLSRVMPLVASRAHQHAAARVRELIAKYQEIELLVQIGEYRE  413
            LSRK+A   +YPAIDVL S+SRV   V++ +H + A+ VR L+++ +E++L++++GEYR 
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  414  GSDRLGDLALRARDAIGAFCAQASDEDVRFDALLAKLTKLANDH  457
            G +   D A++ RD++ A   Q+  +   FD  L+ +  +A+++
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

144) Bmul_3747 in NC_010086


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  286 bits (1071),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 180/420 (43%), Positives = 296/420 (71%), Gaps = 9/420 (2%)

Query  49   NHAVGQILNATGIRAKLGEICELRTPNQPTLL---AEVVGFSRQTTLLTPLGDVAGLSPE  105
            +   G I++A      +GE+CE+R   +   +   A+VVG+ R+ T+L+ +G+  GLS +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  106  TTVVPSGREHVFPVGEALFGRVLDGLGRPLD----DRGPVTGATWVSTQQDPPNPLARRM  161
              + P+GR     VG +++G VLD  G+ ++    + +P++       +  PP+  +R  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVG  131

Query  162  IDTPFPTGVRVIDGLMTLGVGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGR  221
            +  P+ TGVR IDGL+T GVGQR+GIFA++G GK+ L+ M+   ++ADV VI+L+GERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  222  EVREFIEHALSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSL  281
            EV EF++   +++ + + ++V +TSD P+++R ++A +AT++AE FRD GKRV+L++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  282  TRFARAQREVGLASGEPPTRRSFPPSTFAVLPRLLERAGQGATGSITALYTVLVEGDEES  341
            TR+ARA R+V+LASGE P+RR++P+S F  LPRLLER+G  + GSITA+YTVL+E++EE+
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  342  DPIAEEVRSILDGHIVLSRKIALANRYPAIDVLASLSRVMPLVASRAHQQAAARVRELIA  401
            DP+A+E+RSILDGH+ LSRK+A   +YPAIDVL S+SRV   V++ +H + A+ VR L++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  402  KYQEIELLVQIGEYREGSDRLGDLALRAREAIGAFCAQAQHEDVRFDALLAKLTKLANDH  461
            + +E++L++++GEYR G +   D A++ R+++ A   Q+  +   FD  L+ +  +A+++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

145) yscN in NC_010805


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  286 bits (1071),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 180/420 (43%), Positives = 296/420 (71%), Gaps = 9/420 (2%)

Query  49   NHAVGQILNATGIRAKLGEICELRTPNQPTLL---AEVVGFSRQTTLLTPLGDVAGLSPE  105
            +   G I++A      +GE+CE+R   +   +   A+VVG+ R+ T+L+ +G+  GLS +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  106  TTVVPSGREHVFPVGEALFGRVLDGLGRPLD----DRGPVTGATWVSTQQDPPNPLARRM  161
              + P+GR     VG +++G VLD  G+ ++    + +P++       +  PP+  +R  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVG  131

Query  162  IDTPFPTGVRVIDGLMTLGVGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGR  221
            +  P+ TGVR IDGL+T GVGQR+GIFA++G GK+ L+ M+   ++ADV VI+L+GERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  222  EVREFIEHALSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSL  281
            EV EF++   +++ + + ++V +TSD P+++R ++A +AT++AE FRD GKRV+L++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  282  TRFARAQREVGLASGEPPTRRSFPPSTFAVLPRLLERAGQGATGSITALYTVLVEGDEES  341
            TR+ARA R+V+LASGE P+RR++P+S F  LPRLLER+G  + GSITA+YTVL+E++EE+
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  342  DPIAEEVRSILDGHIVLSRKIALANRYPAIDVLASLSRVMPLVASRAHQQAAARVRELIA  401
            DP+A+E+RSILDGH+ LSRK+A   +YPAIDVL S+SRV   V++ +H + A+ VR L++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  402  KYQEIELLVQIGEYREGSDRLGDLALRAREAIGAFCAQAQHEDVRFDALLAKLTKLANDH  461
            + +E++L++++GEYR G +   D A++ R+++ A   Q+  +   FD  L+ +  +A+++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

146) Bamb_4222 in NC_008391


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  286 bits (1069),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 177/405 (44%), Positives = 290/405 (72%), Gaps = 11/405 (2%)

Query  64   LGEICELRTPNQPTLL---AEVVGFSRQTTLLTPLGDVAGLSPETTVVPSGREHVFPVGE  120
            +GE+CE+R   +   +   A+VVG+ R+ T+L+ +G+  GLS +  + P+GR     VG 
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY  89

Query  121  ALFGRVLDGLGRPLD----DRGPVTGAAWVSTQQDPPNPLARKMIDTPFPTGVRVIDGLM  176
            +++G VLD  G+ ++    + +P++       +  PP+  +R  +  P+ TGVR IDGL+
Sbjct  90   SVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  177  TLGIGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVREFIEHSLSPEVRA  236
            T G+GQR+GIFA++G GK+ L+ M+   ++ADV VI+L+GERGREV EF++   +++ + 
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  237  RSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFARAQREVGLASGE  296
            + ++V +TSD P+++R ++A +AT++AE FRD GKRV+L++DS+TR+ARA R+V+LASGE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  297  PPTRRSFPPSTFAVLPRLLERAGQGATGSITALYTVLVEGDEESDPIAEEVRSILDGHIV  356
             P+RR++P+S F  LPRLLER+G  + GSITA+YTVL+E++EE+DP+A+E+RSILDGH+ 
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  357  LSRKIALANRYPAIDVLASLSRVMPLVASRAHQQSAARVRELIAKYQEIELLVQIGEYRE  416
            LSRK+A   +YPAIDVL S+SRV   V++ +H + A+ VR L+++ +E++L++++GEYR 
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  417  GSDRLGDLALRARDAIGAF-CAQGSHEDVRFDALLAKLTKLANDH  460
            G +   D A++ RD++ A  C   ++    FD  L+ +  +A+++
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYS-SFDDTLSGMNAFADQN  431

147) BamMC406_4744 in NC_010552


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  286 bits (1069),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 177/405 (44%), Positives = 290/405 (72%), Gaps = 11/405 (2%)

Query  64   LGEICELRTPNQPTLL---AEVVGFSRQTTLLTPLGDVAGLSPETTVVPSGREHVFPVGE  120
            +GE+CE+R   +   +   A+VVG+ R+ T+L+ +G+  GLS +  + P+GR     VG 
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY  89

Query  121  ALFGRVLDGLGRPLD----DRGPVTGAAWVSTQQDPPNPLARKMIDTPFPTGVRVIDGLM  176
            +++G VLD  G+ ++    + +P++       +  PP+  +R  +  P+ TGVR IDGL+
Sbjct  90   SVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  177  TLGIGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVREFIEHSLSPEVRA  236
            T G+GQR+GIFA++G GK+ L+ M+   ++ADV VI+L+GERGREV EF++   +++ + 
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  237  RSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFARAQREVGLASGE  296
            + ++V +TSD P+++R ++A +AT++AE FRD GKRV+L++DS+TR+ARA R+V+LASGE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  297  PPTRRSFPPSTFAVLPRLLERAGQGATGSITALYTVLVEGDEESDPIAEEVRSILDGHIV  356
             P+RR++P+S F  LPRLLER+G  + GSITA+YTVL+E++EE+DP+A+E+RSILDGH+ 
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  357  LSRKIALANRYPAIDVLASLSRVMPLVASRAHQQSAARVRELIAKYQEIELLVQIGEYRE  416
            LSRK+A   +YPAIDVL S+SRV   V++ +H + A+ VR L+++ +E++L++++GEYR 
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  417  GSDRLGDLALRARDAIGAF-CAQGSHEDVRFDALLAKLTKLANDH  460
            G +   D A++ RD++ A  C   ++    FD  L+ +  +A+++
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYS-SFDDTLSGMNAFADQN  431

148) hrcN in NC_007508


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  285 bits (1068),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 185/418 (45%), Positives = 299/418 (72%), Gaps = 6/418 (1%)

Query  30   EVVGTMLKVAGVQVSLGEVCELRQ--RDGTLLQRAEVVGFSRDLALLAPFGELIGLSRET  87
             + G ++     +V++GE+CE+R+  ++  ++ RA+VVG+ R+ ++L+ +G+  GLSR+ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   RVIGLGRPLAVPVGPALLGRVLDGLG---EPSDGQGAIACDTWVPIQAQAPDPMRRRLIE  144
             +   GR+L+  VG ++LG VLD  G   E    + A   + +V I+  +P    R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVR  133

Query  145  HPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCDVNVIVLIGERGREV  204
            +P+ TGVR +DGL+T G GQRMGIFA+AG GK+ LM M+   T+ DV VI LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  205  REFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSLTR  264
             EF++++ +++   + V+V ATSD +S++R +AA ++T++AEYFRD+G RV+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  265  FARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGESGSITAFYTVLAEDDTGSDP  324
            +ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G    GSITAFYTVL E +  +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  325  IAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPYDHSQAAGRLRRLLAKY  384
            +A+E+R+ILDGHL LSR +A++ +YPAIDVL S+SRV +Q+    H++ A+ +R+L+++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  385  NEVETLVQVGEYRQGSdavadeaidridairdFLSQPTDQLSAYENTLELLTSVTDDA  442
            +E++ ++++GEYR G +   D A++  D+++  L QP  Q S++++TL  + + +D+ 
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

149) XC_3006 in NC_007086


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  285 bits (1068),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 183/418 (44%), Positives = 296/418 (71%), Gaps = 6/418 (1%)

Query  30   EVIGTMLKVAGVQVSLGEVCELRQ--RDGTLLQRAEVVGFSRTLALLAPFGELVGLSRQT  87
             + G ++     +V++GE+CE+R+  ++  ++ RA+VVG+ R  ++L+ +G+  GLSR+ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   RVIGLGRPLAVPVGSALLGRVLDGLGEPAD---GQGPLAGDDWVQIQAQAPDPMRRRLIE  144
             +   GR+L+  VG ++LG VLD  G   +    + +  ++++V I+  +P    R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVR  133

Query  145  QPLPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLIGMFARGTQCDVNVIVLIGERGREV  204
            +PL TGVR +DGL+T G GQRMGIFA+AG GK+ L+ M+   T+ DV VI LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  205  REFIEMILGPDGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGMRVLLMMDSLTR  264
             EF++M+ +++   + V+V ATSD +S++R +AA ++T++AEYFRD+G RV+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  265  FARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGETGSITAFYTVLAEDDTGSDP  324
            +ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G    GSITAFYTVL E +  +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  325  IAEEVRGILDGHLILSREIAARNQYPAIDVLGSLSRVMSQIVSAEQRQYAGQLRRLLAKH  384
            +A+E+R+ILDGHL LSR +A++ +YPAIDVL S+SRV +Q+ ++ + + A+ +R+L+++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  385  NEVETLLQVGEYRHGSdavadeaiaridairdFLSQPTDQLSDYDTILEQLAGVIDDA  442
            +E++ ++++GEYR G +   D A+   D+++  L QP  Q S +D  L  + +  D+ 
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

150) hrcN in NC_003902


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  285 bits (1068),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 183/418 (44%), Positives = 296/418 (71%), Gaps = 6/418 (1%)

Query  30   EVIGTMLKVAGVQVSLGEVCELRQ--RDGTLLQRAEVVGFSRTLALLAPFGELVGLSRQT  87
             + G ++     +V++GE+CE+R+  ++  ++ RA+VVG+ R  ++L+ +G+  GLSR+ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   RVIGLGRPLAVPVGSALLGRVLDGLGEPAD---GQGPLAGDDWVQIQAQAPDPMRRRLIE  144
             +   GR+L+  VG ++LG VLD  G   +    + +  ++++V I+  +P    R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVR  133

Query  145  QPLPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLIGMFARGTQCDVNVIVLIGERGREV  204
            +PL TGVR +DGL+T G GQRMGIFA+AG GK+ L+ M+   T+ DV VI LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  205  REFIEMILGPDGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGMRVLLMMDSLTR  264
             EF++M+ +++   + V+V ATSD +S++R +AA ++T++AEYFRD+G RV+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  265  FARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGETGSITAFYTVLAEDDTGSDP  324
            +ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G    GSITAFYTVL E +  +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  325  IAEEVRGILDGHLILSREIAARNQYPAIDVLGSLSRVMSQIVSAEQRQYAGQLRRLLAKH  384
            +A+E+R+ILDGHL LSR +A++ +YPAIDVL S+SRV +Q+ ++ + + A+ +R+L+++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  385  NEVETLLQVGEYRHGSdavadeaiaridairdFLSQPTDQLSDYDTILEQLAGVIDDA  442
            +E++ ++++GEYR G +   D A+   D+++  L QP  Q S +D  L  + +  D+ 
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

151) Bcen_3519 in NC_008061


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  285 bits (1066),  Expect = 5e-78, Method: Compositional matrix adjust.
 Identities = 177/404 (44%), Positives = 290/404 (72%), Gaps = 9/404 (2%)

Query  61   LGEICELRTPNQPTLL---AEVVGFSRQTTLLTPLGDVAGLSPETTVVPSGREHVFPVGE  117
            +GE+CE+R   +   +   A+VVG+ R+ T+L+ +G+  GLS +  + P+GR     VG 
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY  89

Query  118  GLFGRVLDGLGRPLD----DRGPVTGAAWVSTQQDPPNPLARKMIDTPFPTGVRVIDGLM  173
            +++G VLD  G+ ++    + +P++       +  PP+  +R  +  P+ TGVR IDGL+
Sbjct  90   SVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  174  TLGIGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVREFIEHSLSPEVRA  233
            T G+GQR+GIFA++G GK+ L+ M+   ++ADV VI+L+GERGREV EF++   +++ + 
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  234  RSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFARAQREVGLASGE  293
            + ++V +TSD P+++R ++A +AT++AE FRD GKRV+L++DS+TR+ARA R+V+LASGE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  294  PPTRRSFPPSTFAVLPRLLERAGQGAHGSITALYTVLVEGGEESDPIAEEVRSILDGHIV  353
             P+RR++P+S F  LPRLLER+G  ++GSITA+YTVL+E+ EE+DP+A+E+RSILDGH+ 
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  354  LSRKIALANRYPAIDVLASLSRVMPLVASRAHQHAAARVRELIAKYQEIELLVQIGEYRE  413
            LSRK+A   +YPAIDVL S+SRV   V++ +H + A+ VR L+++ +E++L++++GEYR 
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  414  GSDRLGDLALRARDAIGAFCAQASDEDVRFDALLAKLTKLANDH  457
            G +   D A++ RD++ A   Q+  +   FD  L+ +  +A+++
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

152) NH44784_014581 in NC_021285


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  283 bits (1059),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 187/418 (45%), Positives = 299/418 (72%), Gaps = 8/418 (1%)

Query  29   QVIGTIIKAVVPSVKVGEVCILRNPGENFEM--KGEVVGFARDAALLTPIGDMYGISTAT  86
            ++ G II A +  V +GE+C +R   ++ ++  +++VVG+ R+ ++L+ IG+  G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  87   EVIPTGRAHMvpvgpgllgrvldglgrpld--EAERGPLEASKFYPVFAEAPDPLKRRI-  143
             + PTGRA    VG ++LG VLD  G+ ++   +E +P+   +   V+  AP +   R+ 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER---VIDVAPPSYASRVG  131

Query  144  ISQPLELGVRALDSVLTCGEGQRMGIFAAAGGGKSTLMGMLVKGAAVDVTVVALIGERGR  203
            + +PL  GVRA+D++LTCG GQRMGIFA+AG GK+ LM ML+  +  DV V++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  204  EVREFLEHELGREGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGKRVLFLMDSV  263
            EV EF++   + + + K V+V ATSD +S++R +AA +AT++AEYFRDQGKRV++++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  264  TRFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNEHGSITALYTVLVEGDDMT  323
            TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G   +GSITA+YTVL+E+++ +
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  324  EPIADETRSILDGHIVLSRKLGAANHYPAIDVLASASRVMNAVITPEHKRAAGRLRELMA  383
            +P+ADE RSILDGH+ LSRKL++  HYPAIDVL S SRV   V TP H   A+ +R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  384  KYQEVELLVKIGEYKRGGDAVTDEAIDKIGAINQFLRQRTDERATLPEALAQMTGIVG  441
            + +E++L++ +GEY+ G +   D A++  ++++  L Q   + +++ ++L+ M ++ +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

153) rhcN in NC_004463


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  281 bits (1053),  Expect = 5e-77, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 278/411 (68%), Gaps = 11/411 (2%)

Query  42   RAVGTLLHAVLPEARVGELCLLQDPRSGWSLE-----AEVIGLLPDGVLLTPIGDMVGLS  96
            +  G +++A L +  +GELC   + R GW        A+V+GL  +  +L+ IG+  GLS
Sbjct  15   KITGPIIEAELRDVAIGELC---EIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS  71

Query  97   NRAEVVTTGRMQEVAAGPDLLGRVIDSFGRPLDGKGP--IKAGEARPLRGRAPNPMKRRA  154
                +  TGR      G  +LG V+D+ G+ ++   P     +E R +   +P+   R +
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVG  131

Query  155  IEQPFPLGVRVLDGLLTCGEGQRIGIYGDAGCGKSTLMSQIVRGAAADVTIVALIGERGR  214
            + +P+  GVR +DGLLTCG GQR+GI++ AGCGK+ LM  ++  + ADV +++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  215  EVREFIER-HLGEALHRSVVVVETSDRSAMERAQCAHMATALAEYFRDQGLRVVLMMDSL  273
            EV EF++  + ++  ++ V+V  TSD ++++R + A++AT++AEYFRDQG RVVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  274  TRFSRAMREIGLAAGEPPTRRGFPPSVFALLPGLLERAGMGEHGSITAFYTVLVEGDGTG  333
            TR++RA+R+++LA+GE P+RRG+P+SVF  LP LLER+G   +GSITAFYTVL+E++  +
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  334  DPIAEESRGILDGHIILSRALASREHFPAIDVLSSRSRVMDAIVSVPHRKAASFFRDLLS  393
            DP+A+E R+ILDGH+ LSR LA++ H+PAIDVL S SRV + + +  H   AS  R L++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  394  RYAEAEFLIKVGEYKQGSDPLTDRAIASIEQLRAFLRQGQGEACSFEETIA  444
            R  E +++I +GEY+ G +   DRA+   + L+A L Q  ++  SF++T++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

154) rhcN in NC_017249


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  281 bits (1053),  Expect = 5e-77, Method: Compositional matrix adjust.
 Identities = 177/411 (44%), Positives = 278/411 (68%), Gaps = 11/411 (2%)

Query  42   RAVGTLLHAVLPEARVGELCLLQDPRSGWSLE-----AEVIGLLPDGVLLTPIGDMVGLS  96
            +  G +++A L +  +GELC   + R GW        A+V+GL  +  +L+ IG+  GLS
Sbjct  15   KITGPIIEAELRDVAIGELC---EIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS  71

Query  97   NRAEVVTTGRMQEVAAGPDLLGRVIDSFGRPLDGKGP--IKAGEARPLRGRAPNPMKRRA  154
                +  TGR      G  +LG V+D+ G+ ++   P     +E R +   +P+   R +
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVG  131

Query  155  IEQPFPLGVRVLDGLLTCGEGQRIGIYGDAGCGKSTLMSQIVRGAAADVTIVALIGERGR  214
            + +P+  GVR +DGLLTCG GQR+GI++ AGCGK+ LM  ++  + ADV +++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  215  EVREFIER-HLGEALHRSVVVVETSDRSAMERAQCAHMATALAEYFRDQGLRVVLMMDSL  273
            EV EF++  + ++  ++ V+V  TSD ++++R + A++AT++AEYFRDQG RVVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  274  TRFSRAMREIGLAAGEPPTRRGFPPSVFALLPGLLERAGMGEHGSITAFYTVLVEGDGTG  333
            TR++RA+R+++LA+GE P+RRG+P+SVF  LP LLER+G   +GSITAFYTVL+E++  +
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  334  DPIAEESRGILDGHIILSRALASREHFPAIDVLSSRSRVMDAIVSVPHRKAASFFRDLLS  393
            DP+A+E R+ILDGH+ LSR LA++ H+PAIDVL S SRV + + +  H   AS  R L++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  394  RYAEAEFLIKVGEYKQGSDPLTDRAIASIEQLRAFLRQGQGEACSFEETIA  444
            R  E +++I +GEY+ G +   DRA+   + L+A L Q  ++  SF++T++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

155) Sbal117_2086 in NC_017579


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  281 bits (1050),  Expect = 8e-77, Method: Compositional matrix adjust.
 Identities = 171/419 (41%), Positives = 298/419 (72%), Gaps = 10/419 (2%)

Query  29   VRYFGKVQEVGATLVRATLPGAHQGELCLIGNRL-------RAEVVAVKGNEALLSPFDV  81
            ++Y++  Q + + ++ A L +   GELC I           RA+VV+++ + ++LS ++ 
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  82   TAGLCSGELVETLGHGHQVPLGQGLLGRVVDGLGAPMDGYGLTATAL---RPNQGSAPNP  138
            + GL  + ++   G++    +G ++LG V+D  G  ++ +    +++   R  + ++P+ 
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSY  126

Query  139  LSRQLIDTVMPMGIRAIDSALACGVGQRIGIFAAAGGGKSTLLGMIAAHCQADVIVLALV  198
             SR  +   +  G+RAID+ L+CGVGQR+GIFA+AG GK+ L+ M+  + +ADV+V++L+
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  199  GERGREVREFIEYNLTPEARARTVMVVATSDRPPLERMKATLTATTIAEYFRDQGKNVLL  258
            GERGREV EF++   +++ + + V+V ATSD P+++R +A+  ATT+AEYFRDQGK V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  259  MVDSLTRFARSAREIALAAGESPVSSGYPPSVFVNLSALVERAGPAAQGSITGIYTVLVE  318
             +DS+TR+AR+ R++ALA+GE P   GYP+SVF NL+ L+ER+G++++GSIT++YTVL+E
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  319  GDDMNEPIADEVRSLLDGHIVLSRRLAGAGHYPAIDINASVSRVMDQIVSPEQRCHAAKM  378
            +++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSRV +Q+ +P +  +A+ +
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  379  RQLLALYQEVQLLIRVGEYVKGADKETDEAVARHQDIQQFLCQSVNEFSPYEETLQKLQ  437
            R+L++  +E+QL+I +GEY  G + + D A+  ++ ++  LCQ+V ++S++++TL  ++
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

156) Sbal_1970 in NC_009052


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  281 bits (1050),  Expect = 8e-77, Method: Compositional matrix adjust.
 Identities = 171/419 (41%), Positives = 298/419 (72%), Gaps = 10/419 (2%)

Query  29   VRYFGKVQEVGATLVRATLPGAHQGELCLIGNRL-------RAEVVAVKGNEALLSPFDV  81
            ++Y++  Q + + ++ A L +   GELC I           RA+VV+++ + ++LS ++ 
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  82   TAGLCSGELVETLGHGHQVPLGQGLLGRVVDGLGAPMDGYGLTATAL---RPNQGSAPNP  138
            + GL  + ++   G++    +G ++LG V+D  G  ++ +    +++   R  + ++P+ 
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSY  126

Query  139  LSRQLIDTVMPMGIRAIDSALACGVGQRIGIFAAAGGGKSTLLGMIAAHCQADVIVLALV  198
             SR  +   +  G+RAID+ L+CGVGQR+GIFA+AG GK+ L+ M+  + +ADV+V++L+
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  199  GERGREVREFIEYNLTPEARARTVMVVATSDRPPLERMKATLTATTIAEYFRDQGKNVLL  258
            GERGREV EF++   +++ + + V+V ATSD P+++R +A+  ATT+AEYFRDQGK V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  259  MVDSLTRFARSAREIALAAGESPVSSGYPPSVFVNLSALVERAGPAAQGSITGIYTVLVE  318
             +DS+TR+AR+ R++ALA+GE P   GYP+SVF NL+ L+ER+G++++GSIT++YTVL+E
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  319  GDDMNEPIADEVRSLLDGHIVLSRRLAGAGHYPAIDINASVSRVMDQIVSPEQRCHAAKM  378
            +++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSRV +Q+ +P +  +A+ +
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  379  RQLLALYQEVQLLIRVGEYVKGADKETDEAVARHQDIQQFLCQSVNEFSPYEETLQKLQ  437
            R+L++  +E+QL+I +GEY  G + + D A+  ++ ++  LCQ+V ++S++++TL  ++
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

157) Acear_1643 in NC_014378


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  281 bits (1050),  Expect = 9e-77, Method: Compositional matrix adjust.
 Identities = 178/413 (44%), Positives = 283/413 (69%), Gaps = 4/413 (0%)

Query  29   QVVGLIIESEGPDVTLGEICLIKSDSNSEPI--QAEVVGFRDNKVLLMPLGEMGGIGPGC  86
            ++ G IIE+E  DV++GE+C I+ + +   +  +A+VVG++ ++ +L  +G+  G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  87   KVEATNEPLKVKVGDELLGHVLDGLGNPLTDL--DLDQLHKEYSVNNPPPNPLVRQRITE  144
             + +T  +L   VG  +LG VLD  G+ +  +  ++  +  E  ++ +PP+   R  + E
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  145  PLSVGIRSIDGLLTCGRGQRLGIFAGSGVGKSTLLGMIARNTAADVNVIGLIGERGREVR  204
            PL  G+R+IDGLLTCG GQR+GIFA++G GK+ L+ M+  +T ADV VIGLIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  205  EFIEDDLGTEGLKRSVVVVATSDQPALVRLKGALVTTTIAEYFRDQGQDVMLMMDSITRF  264
            EF++   +++   + V+V ATSD P++ R ++A ++TT+AEYFRDQG+ V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  265  ARAQREVGLAVGEPPATRGYTPSVFAMLPKLLERAGNNEVGTITGLYNVLVEGDDMNEPI  324
            ARA R+V+LA GE PA RGY +SVF  LP+LLER+G    G+IT++Y VL+E+++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  325  ADAVRGIVDGHITLSRDLATQNHYPAVDVLESVSRVMDDVVTEEHQTAAQQLREVLATYE  384
            AD +R+I+DGH+ LSR LA Q HYPA+DVL SVSRV ++V T  H   A  +R +++  E
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  385  ESKDLVNIGAYEEGNNPELDYALSKLDEVNDFLQQGVEEKSDFETTLQQLKNI  437
            E + ++++G Y  G+N + D A+   D ++  L Q V + S F+ TL  ++ +
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

158) Sbal175_2395 in NC_017571


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  280 bits (1048),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 171/419 (41%), Positives = 298/419 (72%), Gaps = 10/419 (2%)

Query  29   VRYFGKVQEVGATLVRATLPGAHQGELCLIGNRL-------RAEVVAVKGNEALLSPFDV  81
            ++Y++  Q + + ++ A L +   GELC I           RA+VV+++ + ++LS ++ 
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  82   TAGLCSGELVETLGHGHQVPLGQGLLGRVVDGLGAPMDGYGLTATAL---RPNQGSAPNP  138
            + GL  + ++   G++    +G ++LG V+D  G  ++ +    +++   R  + ++P+ 
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSY  126

Query  139  LSRQLIDTVMPMGIRAIDSALACGVGQRIGIFAAAGGGKSTLLGMIAAHCQADVIVLALV  198
             SR  +   +  G+RAID+ L+CGVGQR+GIFA+AG GK+ L+ M+  + +ADV+V++L+
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  199  GERGREVREFIEYNLTPEARARTVMVVATSDRPPLERMKATLTATTIAEYFRDQGKNVLL  258
            GERGREV EF++   +++ + + V+V ATSD P+++R +A+  ATT+AEYFRDQGK V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  259  MVDSLTRFARSAREIALAAGESPVSSGYPPSVFVNLSALVERAGPAAQGSITGIYTVLVE  318
             +DS+TR+AR+ R++ALA+GE P   GYP+SVF NL+ L+ER+G++++GSIT++YTVL+E
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  319  GDNMNEPIADEVRSLLDGHIVLSRRLAGAGHYPAIDINASVSRVMDQIVSPEQRCHAAKM  378
            +++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSRV +Q+ +P +  +A+ +
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  379  RQLLALYQEVQLLIRVGEYVKGADKETDEAVARHQDIQQFLCQSVNEFSPYEETLQKLQ  437
            R+L++  +E+QL+I +GEY  G + + D A+  ++ ++  LCQ+V ++S++++TL  ++
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

159) C770_GR4pC1267 in NC_019848


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  280 bits (1046),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 283/409 (70%), Gaps = 4/409 (0%)

Query  33   RRITGIIVHATAPMVRIGELCYLRDPVSGTTV--PAEVVGFEDEEAVLTPIGDLEGMSTR  90
            ++ITG I++A    V IGELC +R       V   A+VVG++ E +VL+ IG+ +G+S  
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  91   AEVIATGKTLQIPVGEGLLGRVLNPLGEVLDLAEDRTVPLVTGTYYPTHRPPPNALQRDL  150
              + +TG++L   VG ++LG VL+P G +++       P+        + +PP+   R  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVG  131

Query  151  ITHPLQLGIRAIDGLLTVARGQRVGIFGEPGVGKSSLLSAIVRGTKADVVVIGLVGERGR  210
            + +PL  G+RAIDGLLT + GQR+GIF+ +G GK+ L+  ++  T ADV VIGL+GERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  211  EVREFIERQLGEEGRKRSVVVVATSDRPAIERVKAAYCATAIAEYFRDQGQDVLLLMDSV  270
            EV EF++   + + + + V+V ATSD P+++R +AA  AT++AEYFRDQG+ V+L++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  271  TRFARAQREIGLAAGEPPTRRGYPPSLFAALPRLLERAGPGRGGTITALYTVLTEGDGTL  330
            TR+ARA R+++LA+GE P+RRGYP+S+F  LPRLLER+G+   G+ITA+YTVL E++   
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  331  DPVAEETKAILDGHIMLSSSLAERNFFPAIDVLKSRSRLMESVAGKAHREHAAHIRALLA  390
            DP+A+E ++ILDGH+ LS  LA +  +PAIDVLKS SR+   V+  +H E+A+ +R L++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  391  RYEEIELLLRVGEYERGVDALSDEAIVKREAIEAFLRQDDNEFSSLDTT  439
            R EE++L++ +GEY  G +  +D A+  R+++ A L Q   ++SS+D T
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

160) Halha_0655 in NC_019978


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  280 bits (1046),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 176/410 (43%), Positives = 289/410 (71%), Gaps = 6/410 (1%)

Query  27   KQVVGLTIESQGPTVQLGELCLIETNSNSEMI--KAEVVGFKDTSVLLMPLGDMKGIGPG  84
            +++ G  IE++   V +GELC I    +   +  +A+VVG++    +L  +G+ +G++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   CKVFATGESLQIEVSDELLGTVLDGLGHPV---SEEKLDVTGEKYPVDNDPPDPLARQRI  141
              +++TG +L   V+  +LG+VLD  G  V   + E   ++ E+  +D  PP   +R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER-VIDVAPPSYASRVGV  132

Query  142  SEPLSLGVRSLDGLLTCGKGQRMGIFAGSGVGKSTLLGMIARNTDADINVIALIGERGRE  201
             EPL  GVR++DGLLTCG GQRMGIFA++G GK+ L+ M+  +T+AD+ VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  202  VREFIEESLGPEGLKKSVVIVATSDQPALVRLKGAMVATSIAEYFRDQGNDVMLMMDSVT  261
            V EF++   +++   K V++ ATSD P++ R ++A +AT++AEYFRDQG+ V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  262  RFAMAQREVGLAVGEPPATRGYTPSVFALLPKLLERSGAGEVGTITGLYTVLVEGDDMNE  321
            R+A A R+V+LA GE PA RGY +SVF  LP+LLER+GA   G+IT++YTVL+E+++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  322  PIADAVRGILDGHIVLSRDLAAQNHYPAIDILESVSRVMDEIASAEHKEAAGKLREVLAT  381
            P+AD +R+ILDGH+ LSR LA+Q HYPAID+L SVSRV ++++++ H E A+ +R +++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  382  YEESKDLVNLGVYEAGSDPQLDYALDKLEAVNNFLQQGVKETNSYQETVN  431
             EE + +++LG Y +G + + D A++  ++++  L Q V + +S+++T++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

161) bscN in NC_019382


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  279 bits (1045),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 180/420 (43%), Positives = 289/420 (69%), Gaps = 8/420 (1%)

Query  29   QVVGTIIKAVVPMVKIGEVCLLRNPGEDFEM--HGEVVGFVRDAALLTPIGDMYGISSAT  86
            ++ G II A +  V IGE+C +R   ++ ++  +++VVG+ R+ ++L+ IG+  G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  87   EVIPTGRTHMvpv--gpgllgrvldglgrpldAAESGPLHAHKFYPVFADAPDPLTRRI-  143
             + PTGR+    V  +         G      ++E +P+  ++   V+  AP + + R+ 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER---VIDVAPPSYASRVG  131

Query  144  IHAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGR  203
            ++ PL  GVR +DGLLTCG GQR+GIFA+AG GK+ L+ ML+  +  DV V++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  204  EVREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSV  263
            EV EF++   +++ + K V+V ATSD +S++R +AA +AT++AEYFRDQG+RV++++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  264  TRFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMN  323
            TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G    GSITA+YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  324  EPVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMA  383
            +P+ADE RSILDGH+ LSRKL++  HYPA+DVL S SRV   V +P H   A+ +R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  384  KYQDVELLVKIGEYKQGADASTDEAIQKIGQINAFLRQQTDEREAFEDTVLRMAEIIGPE  443
            + ++++L++ +GEY+ G +   D A+Q  + ++A L Q   +  +F+DT+  M  + + +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

162) fliI in NC_015975


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  279 bits (1045),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 182/425 (43%), Positives = 297/425 (70%), Gaps = 7/425 (1%)

Query  23   YTTYGKVSEVVGLVIKAEGLSVFVGEICEVAIKGSDK---VALAEVVGFVKETVLLMPLD  79
            Y +Y +   + G +I AE   V +GE+CE+  +G ++   VA A+VVG+ +E  +L  ++
Sbjct  9    YLAYPQ--KITGPIIEAELRDVAIGELCEIR-RGWHQKQVVARAQVVGLQRERTVLSLIG  65

Query  80   ELEGIGPGCVVKPTGKTLQVRVGPQLLGHTLDGLGRPLDDSDIDTDKLVDYPVIQDSPDP  139
            + +G++ + V+ PTG++L  +VG  +LG  LD  G+ ++    +   + +  VI+ +P +
Sbjct  66   NAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPS  125

Query  140  F-RRKRISNVMPTGVRTIDGLLTVGEGQRMGIFAGSGVGKSTLLGMIARYCQADVIVIGL  198
            +  R  + + + TGVR+IDGLLT G GQRMGIFA++G GK+ L+ M+    +ADV+VIGL
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  199  IGERGREVMEFIEKDLGKEGYAKSVVVCATSDTPPLVRLKGAHTATAIAEYFRDQGKKVV  258
            IGERGREV EF++   + +   K V+V ATSD P++ R ++A+ AT++AEYFRDQGK+VV
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  259  LMMDSVTRFAMAQREIGLSTGEPPTTKGYTPSVFAELPKLLERSGMSEKGSITAFYTVLV  318
            L +DS+TR+A A R+++L++GE P+ +GY +SVF +LP+LLER+G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  319  EGDDMNEPIADAVRGILDGHIVLSRKIASQNHYPAIDVQVSLSRLMKELVSEEHTKDAGE  378
            E+++  +P+AD +R+ILDGH+ LSRK+A+Q HYPAIDV  S+SR+  ++ +  H+ +A+ 
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  379  LRENMGVYNDSKDLIDIGAYKKGSNAVIDYAVSLHVPIEDFLKQRVEEYSSFEETESRLH  438
            +R  M   ++ + +ID+G Y+ G N   D A+ ++ ++   L Q V +YSSF++T S ++
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

Query  439  GLFEE  443
            ++ ++
Sbjct  426  AFADQ  430

163) bscN in NC_018829


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  278 bits (1039),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 180/420 (43%), Positives = 289/420 (69%), Gaps = 8/420 (1%)

Query  29   QVVGTIIKAVVPMVKIGEVCLLRNPGEDFEM--HGEVVGFVRDAALLTPIGDMYGISSAT  86
            ++ G II A +  V IGE+C +R   ++ ++  +++VVG+ R+ ++L+ IG+  G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  87   EVIPTGRTHMvpv--gpgllgrvldglgrpldAAESGPLHAHKFYPVFADAPDPLTRRI-  143
             + PTGR+    V  +         G      ++E +P+  ++   V+  AP + + R+ 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER---VIDVAPPSYASRVG  131

Query  144  IHAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGR  203
            ++ PL  GVR +DGLLTCG GQR+GIFA+AG GK+ L+ ML+  +  DV V++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  204  EVREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSV  263
            EV EF++   +++ + K V+V ATSD +S++R +AA +AT++AEYFRDQG+RV++++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  264  TRFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMN  323
            TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G    GSITA+YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  324  EPVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMA  383
            +P+ADE RSILDGH+ LSRKL++  HYPA+DVL S SRV   V +P H   A+ +R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  384  KYQDVELLVKIGEYKQGADASTDEAIQKIGQINAFLRQLTDEREAFEDTVLRMAEIIGPE  443
            + ++++L++ +GEY+ G +   D A+Q  + ++A L Q   +  +F+DT+  M  + + +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

164) bscN in NC_018518


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  278 bits (1039),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 180/420 (43%), Positives = 289/420 (69%), Gaps = 8/420 (1%)

Query  29   QVVGTIIKAVVPMVKIGEVCLLRNPGEDFEM--HGEVVGFVRDAALLTPIGDMYGISSAT  86
            ++ G II A +  V IGE+C +R   ++ ++  +++VVG+ R+ ++L+ IG+  G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  87   EVIPTGRTHMvpv--gpgllgrvldglgrpldAAESGPLHAHKFYPVFADAPDPLTRRI-  143
             + PTGR+    V  +         G      ++E +P+  ++   V+  AP + + R+ 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER---VIDVAPPSYASRVG  131

Query  144  IHAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGR  203
            ++ PL  GVR +DGLLTCG GQR+GIFA+AG GK+ L+ ML+  +  DV V++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  204  EVREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSV  263
            EV EF++   +++ + K V+V ATSD +S++R +AA +AT++AEYFRDQG+RV++++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  264  TRFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMN  323
            TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G    GSITA+YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  324  EPVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMA  383
            +P+ADE RSILDGH+ LSRKL++  HYPA+DVL S SRV   V +P H   A+ +R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  384  KYQDVELLVKIGEYKQGADASTDEAIQKIGQINAFLRQLTDEREAFEDTVLRMAEIIGPE  443
            + ++++L++ +GEY+ G +   D A+Q  + ++A L Q   +  +F+DT+  M  + + +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

165) bscN in NC_017223


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  278 bits (1039),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 180/420 (43%), Positives = 289/420 (69%), Gaps = 8/420 (1%)

Query  29   QVVGTIIKAVVPMVKIGEVCLLRNPGEDFEM--HGEVVGFVRDAALLTPIGDMYGISSAT  86
            ++ G II A +  V IGE+C +R   ++ ++  +++VVG+ R+ ++L+ IG+  G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  87   EVIPTGRTHMvpv--gpgllgrvldglgrpldAAESGPLHAHKFYPVFADAPDPLTRRI-  143
             + PTGR+    V  +         G      ++E +P+  ++   V+  AP + + R+ 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER---VIDVAPPSYASRVG  131

Query  144  IHAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGR  203
            ++ PL  GVR +DGLLTCG GQR+GIFA+AG GK+ L+ ML+  +  DV V++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  204  EVREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSV  263
            EV EF++   +++ + K V+V ATSD +S++R +AA +AT++AEYFRDQG+RV++++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  264  TRFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMN  323
            TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G    GSITA+YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  324  EPVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMA  383
            +P+ADE RSILDGH+ LSRKL++  HYPA+DVL S SRV   V +P H   A+ +R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  384  KYQDVELLVKIGEYKQGADASTDEAIQKIGQINAFLRQLTDEREAFEDTVLRMAEIIGPE  443
            + ++++L++ +GEY+ G +   D A+Q  + ++A L Q   +  +F+DT+  M  + + +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

166) bscN in NC_002929


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  278 bits (1039),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 180/420 (43%), Positives = 289/420 (69%), Gaps = 8/420 (1%)

Query  29   QVVGTIIKAVVPMVKIGEVCLLRNPGEDFEM--HGEVVGFVRDAALLTPIGDMYGISSAT  86
            ++ G II A +  V IGE+C +R   ++ ++  +++VVG+ R+ ++L+ IG+  G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  87   EVIPTGRTHMvpv--gpgllgrvldglgrpldAAESGPLHAHKFYPVFADAPDPLTRRI-  143
             + PTGR+    V  +         G      ++E +P+  ++   V+  AP + + R+ 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER---VIDVAPPSYASRVG  131

Query  144  IHAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGR  203
            ++ PL  GVR +DGLLTCG GQR+GIFA+AG GK+ L+ ML+  +  DV V++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  204  EVREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSV  263
            EV EF++   +++ + K V+V ATSD +S++R +AA +AT++AEYFRDQG+RV++++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  264  TRFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMN  323
            TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G    GSITA+YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  324  EPVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMA  383
            +P+ADE RSILDGH+ LSRKL++  HYPA+DVL S SRV   V +P H   A+ +R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  384  KYQDVELLVKIGEYKQGADASTDEAIQKIGQINAFLRQLTDEREAFEDTVLRMAEIIGPE  443
            + ++++L++ +GEY+ G +   D A+Q  + ++A L Q   +  +F+DT+  M  + + +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

167) Rta_29820 in NC_015677


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  277 bits (1035),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 195/414 (48%), Positives = 300/414 (73%), Gaps = 4/414 (0%)

Query  30   VVGTLIRAVGLDVRIGELCELEDMRGRK--IQRAEVVGFGKGGAVLSPFGGLTGVSDSTR  87
            + G +I A   DV IGELCE+   + +K  + RA+VVG+ +  +VLS +G   G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  88   VVGTGKPLTVKVGPGLLGRVIGGLGDPIDGKGPIAG--SEERMVFADPPDPMSRAMIEHP  145
            +  TG++L+  VG ++LG V++  G  ++   P  +  SEER++   PP   SR  + +P
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  146  LPTGVRIIDGLMTFGEGQRMGIFAPAGAGKSTLMGMLARGAQCDVSVIALigergrevre  205
            L TGVR IDGL+T G GQRMGIFA+AG GK+ LM ML   ++ DV VI+LIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  206  fvefiLGEEGMARSVVVCATSDRSSIERakaayvatavaEYFRDHGQKVLLMMDSLTRFA  265
            FV+ + + +   + V+V ATSD +S++R +AA +AT+VAEYFRD+G++V+L +DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  266  RAQREIGLAAGEPPARRGFPPSVFAELPRLLERTGMGATGSITALYTVLVEDESGGDPIA  325
            RA R+++LA+GE PARRG+P+SVF +LPRLLER G  + GSITA+YTVL+E E  +DP+A
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  326  EEVRGILDGHMILSRRIAAKNQYPAIDVLGSLSRVMTQVVPKEHAAMASTLRSLMAKYDE  385
            +E+R+ILDGH+ LSR++A++ +YPAIDVL S+SRV  QV    HA  AS++R LM++ +E
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  386  VEMLLQVGEYKAGNDPLADAAVERIDHIRAFLSQATTDLQPFEETLAHLGSLVN  439
            +++++++GEY++G++   D A++  D ++A L Q+ ++  +F++TL+ + ++ +
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

168) Dred_2405 in NC_009253


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  277 bits (1037),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 179/415 (44%), Positives = 291/415 (71%), Gaps = 4/415 (0%)

Query  30   RVIGLMIEVQGITARIGEVCDIVAQGEPEPV--RAEVVGFRDQFSLLMPLGELRGIYPGC  87
            ++ G +IE +     IGE+C+I    +   V  RA+VVG++ + ++L  +G+ +G+  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   AVIPSGHNLTIKVGKHLQGKVLDGLGRPIDK-TVDYAS-GQEFLVDNKPPNPLKRKRIDS  145
             + P+G+ L+  VG  + G VLD  G+ +++ T + A+ ++E ++D  PP+   R  +  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  146  VLPTGVRAVDALLTCGKGQRIGIFAGSGVGKSTLLGMIARHGSADVNVIALIGERGREVL  205
             L TGVRA+D+LLTCG GQR+GIFA++G GK+ L+ M+  +  ADV VI+LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  206  EFLEEDLGPQGMARSVIVAATSDQPALVRLKGAFVATAIAEYFRDQGLDVMLMMDSVTRF  265
            EF++   +++   + V+V ATSD P++ R ++A +AT++AEYFRDQG  V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  266  AMAQREVGLAVGEPPATKGYTPSVFALLPKLLERSGMGQQGSITAFYTVLVDGDDLNEPI  325
            A A R+V+LA GE PA +GY +SVF  LP+LLER+G   +GSITAFYTVL+++++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  326  ADAVRGILDGHIVLTRKLASANHYPAIDVLQSVSRLMPDIASDQHKNQAGNLRDLLATYQ  385
            AD +R+ILDGH+ L+RKLA+  HYPAIDVL+SVSR+  ++++  H +QA+ +R L++  +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  386  ESEDLINIGAYVLGSNPKIDHAISKHDEIIGYLRQSPLEYSSYEETLNGLADLVG  440
            E + +I++G Y  G N   D+A+  +D + + L Q+  +YSS+++TL+G+  + +
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

169) Varpa_4973 in NC_014931


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  277 bits (1037),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 182/417 (44%), Positives = 299/417 (72%), Gaps = 5/417 (1%)

Query  42   KAVGTLIDATGIQAHVGELVELVTPGEPPLL---AEVVGFRGNTAVLTPLGPITGISALT  98
            K  G +I+A   +  +GEL E+    +   +   A+VVG++ + +VL+ +G   G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  99   EVVPTGGGHSCPVGSQLLGRVLDAMGQPIDG-RGGLAAAARQPVHREPVNPLARRM-IDA  156
             + PTG + S  VG  +LG VLD+ G+ ++     +A+ + + V   +  + A R+ +  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  157  PLPTGIRAIDALLTLGEGQRIGVFSPPGVGKSTLLGMLARGSSADVNVIALIGERGREVK  216
            PL TG+RAID+LLT G GQR+G+F+++G GK+ L+ ML   + ADV VI+LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  217  EFIEHSLGPEGMAKSVIVVSTSERPPMERIKSAHVATTIAEYFRDQGKKVLLLMDSLSRF  276
            EF++   +++   K V+V +TS+ P+++R ++A++ATT+AEYFRDQGK+V+L++DS++R+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  277  ARAQREIGLASGEPPTRRSYPPSIFSMLPQLLERAGQGESGSITAIYSVLTEGDEENDPI  336
            ARA R+++LASGE P+RR+YP+S+F  LP+LLER+G    GSITA+Y+VL E++EE DP+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  337  AEEVRSILDGHVVLSRKLAAANRYPAIDVLASISRVMPLVTDPahraaaahlrellSKYQ  396
            A+E+RSILDGH+ LSRKLA+  +YPAIDVL S+SRV   VT P+H   A+ +R L+++ +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  397  EMELLVQIGEYKPGGdaqadaavrarpaILEFLAQAPGQSVPYAQTLAALHEFSGKE  453
            E++L++++GEY+PG + + D A++ R ++   L Q+ +Q  ++ +TL++++ F++++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

170) VAPA_2c06320 in NC_022234


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  277 bits (1036),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 179/419 (43%), Positives = 289/419 (69%), Gaps = 9/419 (2%)

Query  33   KAVGMLIDASGIQAHVGELCELVTPGEPPLL---AEVVGFRDNTAILTPLGPITGISALT  89
            K  G +I+A   +  +GELCE+    +   +   A+VVG++ + ++L+ +G   G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  90   EVLPTGRGHVCPVGAGLLGRVLDALGQPID----ERGPLKTRTQLPVHREPVSPLARRMI  145
             + PTGR+    VG ++LG VLD+ G+ ++    E +P+     + V   P S  +R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV--APPSYASRVGV  132

Query  146  EAPLPTGIRAVDSLLTLGEGQRVGVFAPPGVGKSTLLGMFARGATADVNVIALIGERGRE  205
              PL TG+RA+D+LLT G GQR+G+FA++G GK+ L+ M+   + ADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  206  VKEFIEHNLGAEGLAKTVMVVSTSDRPPMERIKSAYVATTIAEHFRDQGKKVLLLVDSLT  265
            V EF++   +++   K V+V +TSD P+++R ++A +ATT+AE FRDQGK+V+L++DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  266  RFARAQREIGLASGEPPTRRSYPPSIFSMLPQLLERAGQGRTGSITAVYSVLTEGDEEND  325
            R+ARA R+++LASGE P+RR+YP+S+F  LP+LLER+G    GSITA Y+VL E++EE D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  326  PIAEEVRSILDGHIVLSRKVAAANRYPAIDVLASISRVMPLVASQDHraaaarfrSLLAK  385
            P+A+E+RSILDGH+ LSRK+A+  +YPAIDVL S+SRV   V++  H   A+  R L+++
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  386  YQEMELLVQIGEYKAGGDALADEAIRMRPAMLDFLSQPPDASLPYAQSVETLQRFGGPG  444
             +E++L++++GEY++G +   D A++MR ++   L QP     ++ +++  ++ F++  
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

171) Sbal195_2274 in NC_009997


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  277 bits (1035),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 169/414 (41%), Positives = 293/414 (71%), Gaps = 10/414 (2%)

Query  29   VRYFGKVQEVGATLVRATLPGAHQGELCLIGNRL-------SAEVVAVKGDEALLSPFDV  81
            ++Y++  Q + + ++ A L +   GELC I            A+VV+++ + ++LS ++ 
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  82   TAGLCSGELVETLGHGHQVPLGQGLLGRVVDGLGAPMDGYGLTATSL---RPNQGSAPNP  138
            + GL  + ++   G++    +G ++LG V+D  G  ++ +    +++   R  + ++P+ 
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSY  126

Query  139  LSRQLIDTVMPMGIRAIDSALACGIGQRIGIFAAAGGGKSTLLGMIAAHCQADVIVLTLV  198
             SR  +   +  G+RAID+ L+CG+GQR+GIFA+AG GK+ L+ M+  + +ADV+V+ L+
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  199  GERGREVREFIEYNLTPEARARTVMVVATSDRPPLERMKATLTATTIAEYFRDQGKNVLL  258
            GERGREV EF++   +++ + + V+V ATSD P+++R +A+  ATT+AEYFRDQGK V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  259  MVDSLTRFARSAREIALAAGESPVSSGYPPSVFVNLSALVERAGPAAKGSITGIYTVLVE  318
             +DS+TR+AR+ R++ALA+GE P   GYP+SVF NL+ L+ER+G+++ GSIT++YTVL+E
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  319  GDDMNEPIADEVRSLLDGHIVLSRRLAGAGHYPAIDINASVSRVMDQIVSPEQRCNAAKM  378
            +++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSRV +Q+ +P +  +A+ +
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  379  RQLLALYQEVQLLIRVGEYVQGEDQETDEAVARHQDIQQFLCQSVNEFSPYEET  432
            R+L++  +E+QL+I +GEY  GE+ + D A+  ++ ++  LCQ+V ++S++++T
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

172) Sbal678_2284 in NC_016901


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  277 bits (1035),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 169/414 (41%), Positives = 293/414 (71%), Gaps = 10/414 (2%)

Query  29   VRYFGKVQEVGATLVRATLPGAHQGELCLIGNRL-------SAEVVAVKGDEALLSPFDV  81
            ++Y++  Q + + ++ A L +   GELC I            A+VV+++ + ++LS ++ 
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  82   TAGLCSGELVETLGHGHQVPLGQGLLGRVVDGLGAPMDGYGLTATSL---RPNQGSAPNP  138
            + GL  + ++   G++    +G ++LG V+D  G  ++ +    +++   R  + ++P+ 
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSY  126

Query  139  LSRQLIDTVMPMGIRAIDSALACGIGQRIGIFAAAGGGKSTLLGMIAAHCQADVIVLTLV  198
             SR  +   +  G+RAID+ L+CG+GQR+GIFA+AG GK+ L+ M+  + +ADV+V+ L+
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  199  GERGREVREFIEYNLTPEARARTVMVVATSDRPPLERMKATLTATTIAEYFRDQGKNVLL  258
            GERGREV EF++   +++ + + V+V ATSD P+++R +A+  ATT+AEYFRDQGK V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  259  MVDSLTRFARSAREIALAAGESPVSSGYPPSVFVNLSALVERAGPAAKGSITGIYTVLVE  318
             +DS+TR+AR+ R++ALA+GE P   GYP+SVF NL+ L+ER+G+++ GSIT++YTVL+E
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  319  GDDMNEPIADEVRSLLDGHIVLSRRLAGAGHYPAIDINASVSRVMDQIVSPEQRCNAAKM  378
            +++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSRV +Q+ +P +  +A+ +
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  379  RQLLALYQEVQLLIRVGEYVQGEDQETDEAVARHQDIQQFLCQSVNEFSPYEET  432
            R+L++  +E+QL+I +GEY  GE+ + D A+  ++ ++  LCQ+V ++S++++T
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

173) Cabther_B0657 in NC_016025


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  277 bits (1038),  Expect = 8e-76, Method: Compositional matrix adjust.
 Identities = 183/409 (45%), Positives = 284/409 (70%), Gaps = 8/409 (1%)

Query  33   LVGLLVRASVPGARIEELCLIRSPHRAQDL--KAEVVGFRGSEIILMPLGELQDVAMGAE  90
            + G ++ A + +  I ELC IR   + +++  +A+VVG++    +L  +G+ Q+++ +  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  91   VISTGGSLKVRVGDALLGRVLDGLGEPMD----GKGPIPNAVEVSVTARPPDPMKRQRVT  146
            + +TG +L  +VG ++LG VLD  G  ++      +PI++   + V+  PP    R  V 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVA--PPSYASRVGVR  133

Query  147  RRFMTGVRAIDATLTVGEGQRVGVFAAAGVGKSTLLGMLARNTEAEVNVIALIGERGREV  206
              ++TGVRAID+ LT G GQR+G+FA+AG GK+ L+ ML  +TEA+V VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  207  RDFLEHDLGPEGLKRSVIVVATSNEPSLVRLKAAHVATAIAEYFRDQGKKVLLMMDSVTR  266
             +F++   +++   + V+V ATS+ PS+ R +AA++AT++AEYFRDQGK+V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARALREVGLATGEPPARAGFPPSVFSELPKLLERTGNSQRGSITAFYTVLVEGDDMTEP  326
            +ARALR+V+LA+GE PAR G+P+SVF +LP+LLER G +  GSITAFYTVL+E+++ ++P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  IADETRSILDGHIILSRALAAAGHYPAIDVRHSVSRVMTAVADKDHIAKAMKLRDILDAY  386
            +ADE RSILDGH+ LSR LA+ GHYPAIDV  SVSRV   V+   H  +A  +R ++   
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  ESQKDLILIGAYKSGKDKRTDYAISKIDAVNQFLRQPTSEKADFQDTLN  435
            E  + +I +G Y++G +   D A+   D+++  L QP ++ + F+DTL+
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

174) bscN in NC_002927


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  277 bits (1037),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 180/420 (43%), Positives = 288/420 (69%), Gaps = 8/420 (1%)

Query  29   QVVGTIIKAVVPMVKIGEVCLLRNPGEDFEM--HGEVVGFVRDAALLTPIGDMYGISSAT  86
            ++ G II A +  V IGE+C +R   ++ ++  +++VVG+ R+ ++L+ IG+  G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  87   EVIPTGRTHMvpv--gpgllgrvldglgrpldVAESGPLHAHKFYPVFADAPDPLTRRI-  143
             + PTGR+    V  +         G       +E +P+  ++   V+  AP + + R+ 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER---VIDVAPPSYASRVG  131

Query  144  IHAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGR  203
            ++ PL  GVR +DGLLTCG GQR+GIFA+AG GK+ L+ ML+  +  DV V++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  204  EVREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSV  263
            EV EF++   +++ + K V+V ATSD +S++R +AA +AT++AEYFRDQG+RV++++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  264  TRFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMN  323
            TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G    GSITA+YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  324  EPVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMA  383
            +P+ADE RSILDGH+ LSRKL++  HYPA+DVL S SRV   V +P H   A+ +R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  384  KYQDVELLVKIGEYKQGADASTDEAIQKIGQINAFLRQLTDEREAFEDTVLRMAEIIGPE  443
            + ++++L++ +GEY+ G +   D A+Q  + ++A L Q   +  +F+DT+  M  + + +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

175) BN117_1390 in NC_018828


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  277 bits (1037),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 180/420 (43%), Positives = 288/420 (69%), Gaps = 8/420 (1%)

Query  29   QVVGTIIKAVVPMVKIGEVCLLRNPGEDFEM--HGEVVGFVRDAALLTPIGDMYGISSAT  86
            ++ G II A +  V IGE+C +R   ++ ++  +++VVG+ R+ ++L+ IG+  G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  87   EVIPTGRTHMvpv--gpgllgrvldglgrpldVAESGPLHAHKFYPVFADAPDPLTRRI-  143
             + PTGR+    V  +         G       +E +P+  ++   V+  AP + + R+ 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER---VIDVAPPSYASRVG  131

Query  144  IHAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGR  203
            ++ PL  GVR +DGLLTCG GQR+GIFA+AG GK+ L+ ML+  +  DV V++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  204  EVREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSV  263
            EV EF++   +++ + K V+V ATSD +S++R +AA +AT++AEYFRDQG+RV++++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  264  TRFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMN  323
            TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G    GSITA+YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  324  EPVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMA  383
            +P+ADE RSILDGH+ LSRKL++  HYPA+DVL S SRV   V +P H   A+ +R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  384  KYQDVELLVKIGEYKQGADASTDEAIQKIGQINAFLRQLTDEREAFEDTVLRMAEIIGPE  443
            + ++++L++ +GEY+ G +   D A+Q  + ++A L Q   +  +F+DT+  M  + + +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

176) fliI in NC_018664


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  277 bits (1037),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 184/434 (43%), Positives = 304/434 (71%), Gaps = 10/434 (2%)

Query  17   VKDSEFIKYSGKITKVTGLTIESEGPLSSIGELCYIYPFNEQEPILA--EVVGFKEDKIL  74
            +K + +++Y +   K+TG  IE+E    +IGELC I    +Q  ++A  +VVG++ ++ +
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  75   LMPFGEMEGIRPGSTVVASGHSLRVNVGDQLIGRVIDGLGNPMD----GKGSIKTEKHYS  130
            L  +G+ +G+  +  + ++G++L   VG  ++G V+D  G+ ++      ++I  E+   
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--V  118

Query  131  VSNSPPNPLERKTIREVLPLGVKAIDGLLTCGKGQRIGIFAGSGVGKSTLMGMIARNAEA  190
            +  +PP+   R  +RE L  GV+AIDGLLTCG GQR+GIFA++G GK+ LM M+  ++EA
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  191  DINVIGLIGERGREVREFIENDLKEEGLK-KSVLVIATSDQPALVRMKAAMLTTAIAEYF  249
            D+ VIGLIGERGREV EF++  L+    K K VLV+ATSD P++ R +AA L+T++AEYF
Sbjct  179  DVFVIGLIGERGREVTEFVDM-LRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYF  237

Query  250  RDKGKNVIMLMDSLTRFAMAQREIGLAIGEPPVTRGYTPSVFAVFPKLLERSGASSKGTI  309
            RD+GK V++++DS+TR+A A R+++LA GE P  RGY +SVF  +P+LLER+GA+S G+I
Sbjct  238  RDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSI  297

Query  310  TGLYTVLVDGDDMNEPITDTVRGILDGHIVLSRKLASQNHYPAIDVLQSISRVMSNICDE  369
            T++YTVL+++++  +P++D +R+ILDGH+ LSRKLA+Q HYPAIDVL+S+SRV +++   
Sbjct  298  TAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTP  357

Query  370  EQISTANKVKDLMATYKESEDLINIGAYKKGTskkidqsidsidsiNNFLKQNVLEKYNF  429
             +   A+ V+ LM+   E + +I++G Y+ G +   D++++  DS++  L Q V +  +F
Sbjct  358  THAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

Query  430  DETTSMLKSLVEQE  443
            D+T S ++++ +Q+
Sbjct  418  DDTLSGMNAFADQN  431

177) Clos_1482 in NC_009922


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  276 bits (1032),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 170/422 (41%), Positives = 284/422 (68%), Gaps = 4/422 (0%)

Query  18   LIKYTGYVSQVIGLTIESVGPAVKLGEMCKIYSLKGTEPILS--EVVGFKEKKVLLMPLG  75
            L++Y +Y  ++ G  IE+    V +GE+C I        +++  +VVG++  + +L  +G
Sbjct  6    LLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIG  65

Query  76   EMEGIGPGSKVEALGITMQVSVGEELLGRVLDGLGNPID--DKELLNTNKTYPVMAAPPN  133
            + +G++ +  + + G ++   VG  +LG VLD  G+ ++    E+   +    +  APP+
Sbjct  66   NAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPS  125

Query  134  PLKRTKINEPLALGVKTLDGLLTCGNGQRIGIFAGSGVGKSTLLGMIARNTQADINVIAL  193
               R  + EPL  GV+++DGLLTCG GQR+GIFA++G GK+ L+ M+  +T+AD+ VI+L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  194  IGERGREVREFIENDLQEEGLKRSVVIVATSDQPALIRKKGALLATAVAEYFRDQGKNVI  253
            IGERGREV EF++     +   + V++ ATSD P++ R ++A LAT+VAEYFRDQGK V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  254  LMMDSLTRFSMAQREVGLAVGEPPVSRGYTPSVFAELPKLLERSGTSDKGSITGLYTVLV  313
            L +DS+TR++ A R+V+LA GE P  RGY +SVF +LP+LLER+G++  GSIT++YTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  314  DGDDMNEPIADTVRGILDGHIVLSRKIANRNHYPAIDVLASVSRVMPNIVEKKHLLIANE  373
            ++++  +P+AD +R+ILDGH+ LSRK+A + HYPAIDVL SVSRV  ++    H   A+ 
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  374  IKELLSTYNSSEDLINIGAYIKGTNRRIDESINKIDSINSFLRQDVHDKTTLEDAITMME  433
            ++ L++  +  + +I++G Y  G N   D +++  DS+++ L Q V + ++++D+++ M+
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

Query  434  EI  435
             +
Sbjct  426  AF  427

178) SFBM_0957 in NC_015913


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  275 bits (1030),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 178/414 (43%), Positives = 289/414 (70%), Gaps = 8/414 (1%)

Query  25   KRLVGLTIEAEGIIPFVGEICYIYNEYNER---IECEVVGINQERSILMPFGDVRGISTG  81
            +++ G  IEAE     +GE+C I    +++      +VVG+++ER++L  +G+ +G+S +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  82   SKVIATKKLLTVKISDELLGCVLDGLGRVQIGRSPENYTEFT----IDNKPPIAMKRREI  137
              + +T + L+  ++  +LG VLD  G++ + R   + + ++    ID  PP    R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKI-VERFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  138  TEIMQTGVRVIDGTLTCGVGQRVGIFAGSGVGKSTLMGMLARNASADVNVIGLIGERGRE  197
             E + TGVR IDG LTCGVGQR+GIFA++G GK+ LM ML  ++ ADV VIGLIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  198  LKEFIYHDLGEEGLRKSVVVCATSDEPALIRFKASLVTTAIAEYFREQGKNVILMMDSVT  257
            + EF+    + +   K V+V ATSD P++ R +A+ ++T++AEYFR+QGK V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  258  RFAMAQREVGLAIGEPPATKGYTPSVFALLPKLLERTGPSESGAITAFYTVLVDGDDMND  317
            R+A A R+V+LA GE PA +GY +SVF  LP+LLER G++  G+ITAFYTVL+++++  D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  318  PIADTVRGILDGHIVLSRALAHKNHYPAIDVLKSVSRLMSKITSDEHKQLAGTVRNLLAV  377
            P+AD +R+ILDGH+ LSR LA + HYPAIDVLKSVSR+ +++T+  H + A++VR+L++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  378  YQDAEDLINIGAYVHGSNPDIDKAIQYINQINEYLKQSTTEFTSYEQNLTILKG  431
             ++ + +I++G Y  G N D D+A+Q  + ++  L Q+ ++++S+++ L+ +++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

179) fliI in NC_017294


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  275 bits (1029),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 177/414 (43%), Positives = 289/414 (70%), Gaps = 8/414 (1%)

Query  25   KRLVGLTIEAEGIIPFVGEICYIYNEYNER---IECEVVGINQERSILMPFGDVRGISTG  81
            +++ G  IEAE     +GE+C I    +++      +VVG+++ER++L  +G+ +G+S +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  82   SKVIATKKLLTVKISDELLGCVLDGLGRVQIGRSPENYTEFT----IDNKPPIAMKRREI  137
              + +T + L+  ++  +LG VLD  G++ + R   + + ++    ID  PP    R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKI-VERFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  138  TEIMQTGVRVIDGTLTCGVGQRVGIFAGSGVGKSTLMGMLARNASADVNVIGLIGERGRE  197
             E + TGVR IDG LTCGVGQR+GIFA++G GK+ LM ML  ++ ADV VIGLIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  198  LKEFIYHDLGEEGLRKSVVVCATSDEPALIRFKASLVTTAIAEYFREQGKNVILMMDSVT  257
            + EF+    + +   K V+V ATSD P++ R +A+ ++T++AEYFR+QGK V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  258  RFAMAQREVGLAIGEPPATKGYTPSVFALLPKLLERTGPSESGAITAFYTVLVDGDDMND  317
            R+A A R+V+LA GE PA +GY +SVF  LP+LLER G++  G+ITAFYTVL+++++  D
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  318  PIADTVRGILDGHIVLSRALAHKNHYPAIDVLKSVSRLMSKITSDEHKQLAGTIRNLLAV  377
            P+AD +R+ILDGH+ LSR LA + HYPAIDVLKSVSR+ +++T+  H + A+++R+L++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  378  YQDAEDLINIGAYVHGSNPDIDKAIQYINQINEYLKQSTTEFTSYEQNLTILKG  431
             ++ + +I++G Y  G N D D+A+Q  + ++  L Q+ ++++S+++ L+ +++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

180) Hore_16860 in NC_011899


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  275 bits (1029),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 180/423 (43%), Positives = 299/423 (71%), Gaps = 19/423 (4%)

Query  27   RVVGLIIESKGPEVSIGEICLIKNGKRS----VKAEVVGFDKDKVLLMPIGEMRGINPGA  82
            ++ G IIE+   +V+IGE+C I+ G +      +A+VVG+++++ +L  IG+ +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  83   RVVATGEKLTVKvgegllgqvlnglgqPISSGLKMRHGFT-EVPVMAQ-------PPDPL  134
             + +TG  L+  VG ++LG V       + +  K+ + FT EV+ +++       PP   
Sbjct  75   VLYPTGRALSAWVGYSVLGAV-------LDPTGKIVERFTPEVAPISEERVIDVAPPSYA  127

Query  135  LRKRITEPLSLGIRSIDGLLTCGRGQRVGIFAGSGVGKSTLLGMAARNTEADINVIGLVG  194
             R  + EPL  G+R+IDGLLTCG GQR+GIFA++G GK+ L+ M   +TEAD+ VIGL+G
Sbjct  128  SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIG  187

Query  195  ERGREVRDFIERDLGPEGLKKSIVVVATSDKPALVRVKAAYVATAIAEFFRDQGKNVLLM  254
            ERGREV +F++   +++   K ++V ATSD P++ R +AA +AT++AE+FRDQGK V+L 
Sbjct  188  ERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLF  247

Query  255  MDSVTRVAMAFREVGLAVGEPPATRGYPPSVYAELPKLLERAGTNQHGTITALYTVLVEG  314
            +DS+TR A A+R+V+LA GE PA RGYP+SV+ +LP+LLER+G+  +G+ITA+YTVL+E+
Sbjct  248  IDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLES  307

Query  315  DDFNEPVSDTVRGILDGHIVLSRDLASRNHYPAVDVLESVSRLMPDIVDEEHLQAAGEVK  374
            ++  +P++D +R+ILDGH+ LSR LA++ HYPA+DVL SVSR+  ++    H + A+ V+
Sbjct  308  EEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVR  367

Query  375  KMLADYRESEDLINIGAYKPGSNPAIDRALENINDINTFLRQGIGQKSSFEETVTMLKQI  434
            K+++   E + +I++G Y+PG N   DRA++  + +++ L Q ++Q SSF++T++ ++ +
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

Query  435  AGK  437
            A++
Sbjct  428  ADQ  430

181) Psta_4343 in NC_013720


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  274 bits (1024),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 173/370 (47%), Positives = 269/370 (73%), Gaps = 12/370 (3%)

Query  54   AEVIGFRDNLTLLFPLGDVIGIRQGNRVTLARSTRSV--RVGNQLLGRVIDARGRVIDN-  110
            A+V+G++ + T+L  +G+  G+ ++  V L  + R++  +VG  +LG V+D+ G++++  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRD--VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERF  106

Query  111  --KPAPVLADRVPLDRKPPAATSRPRIDTTFSTGVRAIDGLLTCGVGQRIGVFAGSGVGK  168
                AP+  +RV +D  PP+ +SR  +   + TGVRAIDGLLTCGVGQR+G+FA++G GK
Sbjct  107  TPEVAPISEERV-IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGK  165

Query  169  SVTLGMMAKYSSADVIVIGLIGERGREVNEFLERDLGPTGLARSVCVV--ATSDEPAIMR  226
            ++ + M+   + ADV+VIGLIGERGREV EF+  D+  ++  +  CV+  ATSD P++ R
Sbjct  166  TMLMHMLIEQTEADVFVIGLIGERGREVTEFV--DMLRASHKKEKCVLVFATSDFPSVDR  223

Query  227  VQAASTATAVAEYFRDQGKNVLLMMDSLTRFALAQREIGLAAGEPPTTRGYPPSVFALLP  286
             +AA  AT+VAEYFRDQGK V+L +DS+TR+A A R+++LA+GE P+ RGYP+SVF  LP
Sbjct  224  CNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLP  283

Query  287  RLVERAGRTPQGSITAIYSVLVEGDDVNEPVSDTVRGLLDGHVILSRKLAAQSHYPAIEV  346
            RL+ER+G T++GSITA+Y+VL+E+++  +P++D +R++LDGH+ LSRKLA+Q+HYPAI+V
Sbjct  284  RLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDV  343

Query  347  LGSISRLFTEITTPQQRSAAAIVRELLSAYREHEDLISIGAYRTGANPTVDTAIAMRGEI  406
            L S+SR+F ++TTP +   A+ VR L++   E + +I +G YR G N   D A+ MR+ +
Sbjct  344  LKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSL  403

Query  407  LQFLKQSIDE  416
               L Q++ +
Sbjct  404  KAWLCQPVAQ  413

182) fliI in NC_016012


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  274 bits (1026),  Expect = 6e-75, Method: Compositional matrix adjust.
 Identities = 181/413 (44%), Positives = 283/413 (69%), Gaps = 6/413 (1%)

Query  25   KRLVGLTIEAEGIIPFIGEICYIYNEYGEE---IECEVVGINQERSILMPFGDVRGISTG  81
            +++ G  IEAE     IGE+C I     +       +VVG+++ER++L  +G+ +G+S +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  82   SKVIATKKLLSVKISDELLGCVLDGLGRVQIGNPPENYT---EFTVDNKPPIAMKRKEIT  138
              + +T + LS  ++  +LG VLD  G++     PE      E  +D  PP    R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  139  EIMQTGVRVIDGTLTCGVGQRVGIFAGSGVGKSTLMGMLARNASADVNVIGLIGERGREL  198
            E + TGVR IDG LTCGVGQR+GIFA++G GK+ LM ML  ++ ADV VIGLIGERGRE+
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  199  KEFIHHDLGEEGLKKSVVVCATSDEPALIRFKASLVTTAIAEYFREQGKNVILMMDSVTR  258
             EF++   + +   K V+V ATSD P++ R +A+ ++T++AEYFR+QGK V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  259  FAMAQREVGLAIGEPPATKGYTPSVFALLPKLLERTGPSQNGAITAFYTVLVDGDDMNDP  318
            +A A R+V+LA GE PA +GY +SVF  LP+LLER G++ +G+ITAFYTVL+++++  DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  319  IADTVRGILDGHIVLSRALAQKNHYPAIDVLKSVSRLMSKIVSDEHKELAGTVRNLLAVY  378
            +AD +R+ILDGH+ LSR LA + HYPAIDVLKSVSR+ +++ +  H E A++VR+L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  379  QDAEDLINIGAYVHGSNPDIDKAIQYINQINEYLRQKTMEFTSYEQNLTILKG  431
            ++ + +I++G Y  G N D D+A+Q  + ++  L Q   +++S+++ L+ +++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

183) Ethha_2575 in NC_014828


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  274 bits (1026),  Expect = 7e-75, Method: Compositional matrix adjust.
 Identities = 174/413 (43%), Positives = 285/413 (70%), Gaps = 8/413 (1%)

Query  22   ERVTGLSVESVGPAVRIGEVCRIFPNTGGRPVMA--EVVGFRDKSMLLMPYDNLQGVGPG  79
            +++TG  +E+    V IGE+C I      + V+A  +VVG++    +L   +N QG++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   SVVESTGHSFYVPVGMDMVGRVLDGVGTPID----GKGPIASEAHYLIDVEPANPLQRPR  135
             V+ +TG+++   VG  ++G VLD  G  ++      +PI+ E   +IDV P++   R  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVG  131

Query  136  IKERMPLGVKVIDGLLTCGKGQRIGIFAGSGVGKSTLMGMIARNAQADVNVIALVGERGR  195
            ++E +  GV+ IDGLLTCG GQR+GIFA++G GK+ LM M+  +++ADV VI+L+GERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  196  ELRDFMEKDLQAEGMARTVLVVATSDRPAMARVKCALVATAVAEFFRDKGKNVMLMMDSL  255
            E+ +F++    ++   + VLV ATSD P++ R + A +AT+VAE+FRD+GK V+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  256  TRFAMAQREIGLATGEPPVARGYTPSIFAVMPKLLERSGNFNKGSITGIYTVLVEGDDMN  315
            TR+A A R+++LA+GE P  RGY +S+F  +P+LLER+G  + GSIT++YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  316  EPVADTVRGILDGHIVLTRALAMRNHYPAIDVLASISRLMPDIADPAHMELAGKMRRLMA  375
            +P+AD +R+ILDGH+ L+R LA + HYPAIDVL S+SR+  +++ P+H E A+ +R+LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  376  TYENYADLISIGAYKPGSSEEVDTAIRYHKAIETFLCQRVGEPFSFSRTIDAM  428
              E+   +I +G Y+PG + + D A++ + ++ + LCQ V++  SF  T+ +M
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

184) fliI in NC_018665


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  274 bits (1024),  Expect = 9e-75, Method: Compositional matrix adjust.
 Identities = 172/396 (44%), Positives = 274/396 (70%), Gaps = 6/396 (1%)

Query  41   AVAIGERCLIRIHRGQE---IEAEVVGFREGHVLLMPYGETTAIAPGSIVIATGKPLHVP  97
             VAIGE C IR  + Q      A+VVG++  + +L   G++ +++ + ++ +TG++L   
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  98   VGDDLIGKVLDGLGRSLD--GESLTHLRTTSIVR-KPPSPLDRPRIDQVLSTGIRAIDGL  154
            VG  ++G VLD  G+ ++     ++ +    ++   PPS   R  + + L TG+RAIDGL
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  155  LTVGQGQRVGLFAGSGVGKSTLLGMIAKRSTADINVIALIGERGREVKEFIEAELGEEGM  214
            LT G GQR+G+FA++G GK+ L+ M+  ++ AD+ VI+LIGERGREV EF++   + +  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  215  SRSIIVVATSDQPPLVRLKGAYTATAIAEYFRDQGKNVVLMMDSVTRFAMAQREIGLATG  274
             + ++V ATSD P++ R ++A  AT++AEYFRDQGK VVL +DS+TR+A A R+++LA+G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  275  EPPASKGYTPSVFALLPQLLERSGKTTEGSITAFYTVLVDGDDMNEPIADAVRGILDGHF  334
            E PA +GY +SVF  LP+LLER+G T+EGSITAFYTVL+++++  +P+AD +R+ILDGH+
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  335  VLDRNLANKGQYPAIHVLRSISRVMNQITSTEHKDSAITFRQLLSTYLDAEDLINIGAYK  394
             L R+LA +G+YPAI+VL+S+SRV  Q+T+  H + A + R+L++   + + +I++G Y+
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  395  SGTNPDIDRAVEKYPELIDFLKQRVEEKSHFEEGMS  430
            +G N D DRA++    L   L Q V + S F++ +S
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

185) bscN in NC_002928


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  274 bits (1025),  Expect = 9e-75, Method: Compositional matrix adjust.
 Identities = 179/420 (43%), Positives = 287/420 (69%), Gaps = 8/420 (1%)

Query  29   QVVGTIIKAVVPMVKIGEVCLLRNPGEDFEM--HGEVVGFVRDAALLTPIGDMYGISSAT  86
            ++ G II A +  V IGE+C +R   ++ ++  +++VVG+ R+ ++L+ IG+  G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  87   EVIPTGRTHMvpv--gpgllgrvldglgrpldVAESGPLHAHKFYPVFADAPDPLTRRI-  143
             + PTGR+    V  +         G       +E +P+  ++   V+  AP + + R+ 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER---VIDVAPPSYASRVG  131

Query  144  IHAPLELGVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGR  203
            ++ PL  GVR +DGLLTCG GQR+GIFA+AG GK+ L+ ML+  +  DV V++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  204  EVREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFRDQGQRVLFLMDSV  263
            EV EF++   +++ + K V+V ATSD +S++R +AA +AT++AEYFRDQG+RV++++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  264  TRFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGDDMN  323
            TR+ARA R+++LA+GE P+RRGYP+SVF  LP+L+ER+G    GSITA+YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  324  EPVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMA  383
            +P+ADE RSILDGH+ LSRKL++  HYPA+DVL S SRV   V +P H   A+ +R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  384  KYQDVELLVKIGEHKQGADASTDEAIQKIGQINAFLRQLTDEREAFEDTVLRMAEIIGPE  443
            + ++++L++ +GE + G +   D A+Q  + ++A L Q   +  +F+DT+  M  + + +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

186) Exig_1876 in NC_010556


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  273 bits (1023),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 173/396 (44%), Positives = 276/396 (70%), Gaps = 6/396 (1%)

Query  41   AVAIGERCLIRIHRGDE---IEAEVVGFREGHVLLMPYGETTAIAPGSIVIATGKPLHVP  97
             VAIGE C IR  + +      A+VVG++  + +L   G++ +++ + ++ +TG++L   
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  98   VGDDLIGTVLDGLGRSLD--GKSLAHLRTTSIVR-KPPSPLDRPRIDEVLSTGIRAIDGL  154
            VG  ++G+VLD  G+ ++     +A +    ++   PPS   R  + E L TG+RAIDGL
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  155  LTVGQGQRVGLFAGSGVGKSTLLGMIAKRSMADINVIALIGERGREVKEFIEAELGEEGM  214
            LT G GQR+G+FA++G GK+ L+ M+  ++ AD+ VI+LIGERGREV EF++   + +  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  215  SRSIIVVATSDQPPLVRLKGAYTATAIAEYFRDQGKNVVLMMDSVTRFAMAQREIGLATG  274
             + ++V ATSD P++ R ++A  AT++AEYFRDQGK VVL +DS+TR+A A R+++LA+G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  275  EPPASKGYTPSVFALLPQLLERSGKTTEGSITAFYTVLVDGDDMNEPIADAVRGILDGHF  334
            E PA +GY +SVF  LP+LLER+G T+EGSITAFYTVL+++++  +P+AD +R+ILDGH+
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  335  VLDRNLANKGQYPAIHILRSISRVMNQITSTEHKDSAITFRQLLSTYLDAEDLINIGAYK  394
             L R+LA +G+YPAI++L+S+SRV  Q+T+  H + A + R+L++   + + +I++G Y+
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  395  SGTNPDIDRAVEKYPELIGFLKQRVEEKSHFEDGMS  430
            +G N D DRA++    L + L Q V + S F+D +S
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

187) fliI in NC_017068


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  273 bits (1022),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 171/409 (42%), Positives = 286/409 (70%), Gaps = 9/409 (2%)

Query  35   QVIGLVIESQGPTVSVGELCYI--SSHNPNVPPIPAEVVGFREGYVMLMPVGEMQGIGPG  92
            ++ G +IE++   V++GELC I  + H+ +V +  A+VVG++    +L  +G+ QG++ +
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVA-RAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  93   CEVTAAQKMLNVRVGEELLGRVLDGLGNPID----GKGPILCKQEYSLQADPPHPLSRPR  148
              + ++ + L+ +VG  +LG VLD  G+ ++      +PI   +E  ++  PP   SR  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPI--SEERVIDVAPPSYASRVG  131

Query  149  IHDSLYVGVRAIDGLITMGEGQRIGIMAGSGVGKSTLLSMIARNTEADISVIALVGERGR  208
            ++++L  GVRAIDGL+T G GQR+GI A++G GK+ L+ M+  +TEAD+ VI+L+GERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  209  EVRDFIERDLGEEGMKRSVVVVATSDQPALVRIKGAMTATAIAEYFRDKGRKVILMMDSV  268
            EV +F++   + +   + V+V ATSD P++ R ++A  AT++AEYFRD+G++V+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  269  TRFAMAQREVGLTIGEPPATRGYTPSVFAMLPRLLERAGTSATGSITGIYTVLVDGDDMN  328
            TR+A A R+V+L+ GE PA RGY +SVF  LPRLLER+G+++ GSIT++YTVL+++++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  329  EPIADAVRSILDGHIVLSRNIAAQNHFPAIDIMPSVSRVMNEVVSPEHLKAAQQMRQLMA  388
            +P+AD +RSILDGH+ LSR++A+Q H+PAID++ SVSRV  +V +P H   A  +R+LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  389  VYRDAEDLIHIGAYVKGSSAKIDESIQKIDAINEFLCQGIYEVDTYEDT  437
               + + +I++G Y  G +   D ++Q  D+++  LCQ + +  +++DT
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

188) Bamb_5851 in NC_008392


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  272 bits (1019),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 184/418 (45%), Positives = 288/418 (69%), Gaps = 8/418 (1%)

Query  51   QEVIGTLVRVSGLDATLGELCELR--SPEGALLQRAEVVGFSRDVALLSPFGRLGSVSRA  108
            Q + G ++     D ++GELCE+R    +  ++ RA+VVG+ R+ ++LS +G   ++SR 
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  109  TRVVGLRRPLSLRIGPRLLGRVIDSLGEPID----GKGPLECDEWQPVIADPPDPMSRPV  164
              +    R+LS ++G  +LG V+D+ G  ++      +P+  +E + +   PP   SR  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPIS-EE-RVIDVAPPSYASRVG  131

Query  165  VDTPMPTGVRVVDGMMTLAEGQRMGIFAPAGVGKSTLMGMFARGARCDVNVIALIGERGR  224
            V  P+ TGVR +DG++T + GQRMGIFA+AG GK+ LM M+   +  DV VI+LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  225  EVREFCEHILGPDGMARSVVVCATSDRSSIERakaayaatavaEYFRDRGMRVLLMMDSL  284
            EV EF + + +++   + V+V ATSD +S++R +AA  AT+VAEYFRD+G RV+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  285  TRFARAQREIGLAMGEPPTRRGFPPSIFAELPRLLERAGRSALGSITALYTVLAEDETGG  344
            TR+ARA R+++LA GE P+RRG+P+S+F +LPRLLER+G ++ GSITA+YTVL E E  +
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  345  DPIAEEVRGILDGHMILSREIAAQNRYPAIDVLGSLSRVMTQVVSREHVAAAGHVRRLMA  404
            DP+A+E+R+ILDGH+ LSR +A+Q +YPAIDVL S+SRV  QV +  H   A+ VR+LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  405  KHKEVELLLQVGEYQSGTDALADEAIAKIDAIRDFLGQPTDLLVDPDDTIAALGEIVQ  462
            +  E++L++++GEY++G +   D A+   D+++  L QP       DDT++++  + +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

189) BamMC406_5634 in NC_010557


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  272 bits (1019),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 184/418 (45%), Positives = 288/418 (69%), Gaps = 8/418 (1%)

Query  51   QEVIGTLVRVSGLDATLGELCELR--SPEGALLQRAEVVGFSRDVALLSPFGRLGSVSRA  108
            Q + G ++     D ++GELCE+R    +  ++ RA+VVG+ R+ ++LS +G   ++SR 
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  109  TRVVGLRRPLSLRIGPRLLGRVIDSLGEPID----GKGPLECDEWQPVIADPPDPMSRPV  164
              +    R+LS ++G  +LG V+D+ G  ++      +P+  +E + +   PP   SR  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPIS-EE-RVIDVAPPSYASRVG  131

Query  165  VDTPMPTGVRVVDGMMTLAEGQRMGIFAPAGVGKSTLMGMFARGARCDVNVIALIGERGR  224
            V  P+ TGVR +DG++T + GQRMGIFA+AG GK+ LM M+   +  DV VI+LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  225  EVREFCEHILGPDGMARSVVVCATSDRSSIERakaayaatavaEYFRDRGMRVLLMMDSL  284
            EV EF + + +++   + V+V ATSD +S++R +AA  AT+VAEYFRD+G RV+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  285  TRFARAQREIGLAMGEPPTRRGFPPSIFAELPRLLERAGRSALGSITALYTVLAEDESGG  344
            TR+ARA R+++LA GE P+RRG+P+S+F +LPRLLER+G ++ GSITA+YTVL E E  +
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  345  DPIAEEVRGILDGHMILSREIAAQNRYPAIDVLGSLSRVMTQVVSREHVAAAGHVRRLMA  404
            DP+A+E+R+ILDGH+ LSR +A+Q +YPAIDVL S+SRV  QV +  H   A+ VR+LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  405  KHKEVELLLQVGEYQSGTDALADEAIAKIDAIRDFLGQPTDLLVDPDDTIAALGEIVQ  462
            +  E++L++++GEY++G +   D A+   D+++  L QP       DDT++++  + +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

190) ETAC_04210 in NC_020796


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  272 bits (1017),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 175/411 (43%), Positives = 296/411 (73%), Gaps = 13/411 (3%)

Query  32   TVGATLLRAHLPGVGLGEQCTLPDG-------SPAEVVAIEGDQALLSPYHAPLGLANGM  84
             + + ++ A+L +V++GE C +  G       + A+VV+++ ++++LS    + GL+ ++
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  85   LVTPSGAQARIGVGEALLGRVIDALGQPMDGCAP---PQAAQWRSLESPAPDPMQRAPID  141
            ++ P+G      VG ++LG V+D+ G+ ++  +P   P + + R ++ ++P    R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRVGVR  133

Query  142  TLLPMGVRAIDAALSVGVGQRLGIFSPAGCGKSTLLGMLAAHSQVDVVVLALIGERGREV  201
              L  GVRAID+ L+ GVGQR+GIF++AGCGK+ L+ ML  +++ DV V++LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  REFIEQIMSPELRARSVVILATSDRPALERIKAADTATVIAEYFRDRGHHVLLLVDSLTR  261
             EF++ + +++ + + V+++ATSD P+++R +AA+ AT +AEYFRD+G +V+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  YARAIREIALAAGEPMVSGGYPPSLYARLPRLLERAGPAACGSITAFYTVLV--EQKSDP  319
            YARA+R++ALA+GE     GYP+S++  LPRLLER+G+++ GSITAFYTVL+  E+ +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  320  LAEEVRSLLDGHIVLSRRLAEASHYPAIDILASISRVMSQVVTPQHRQAANRLRHLLATW  379
            +A+E+RS+LDGH+ LSR+LA  +HYPAID+L S+SRV +QV TP H + A+ +R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  380  QEIALLVRVGEYragqdadaddamarreaiaSLLCQQTDERCPLSATLSAL  430
            +E+ L++ +GEYR+G++ D D AM  R+++ + LCQ   +  ++  TLS++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

191) esaN in NC_013508


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  272 bits (1017),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 175/411 (43%), Positives = 296/411 (73%), Gaps = 13/411 (3%)

Query  32   TVGATLLRAHLPGVGLGEQCTLPDG-------SPAEVVAIEGDQALLSPYHAPLGLANGM  84
             + + ++ A+L +V++GE C +  G       + A+VV+++ ++++LS    + GL+ ++
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  85   LVTPSGAQARIGVGEALLGRVIDALGQPMDGCAP---PQAAQWRSLESPAPDPMQRAPID  141
            ++ P+G      VG ++LG V+D+ G+ ++  +P   P + + R ++ ++P    R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRVGVR  133

Query  142  TLLPMGVRAIDAALSVGVGQRLGIFSPAGCGKSTLLGMLAAHSQVDVVVLALIGERGREV  201
              L  GVRAID+ L+ GVGQR+GIF++AGCGK+ L+ ML  +++ DV V++LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  REFIEQIMSPELRARSVVILATSDRPALERIKAADTATVIAEYFRDRGHHVLLLVDSLTR  261
             EF++ + +++ + + V+++ATSD P+++R +AA+ AT +AEYFRD+G +V+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  YARAIREIALAAGEPMVSGGYPPSLYARLPRLLERAGPAACGSITAFYTVLV--EQKSDP  319
            YARA+R++ALA+GE     GYP+S++  LPRLLER+G+++ GSITAFYTVL+  E+ +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  320  LAEEVRSLLDGHIVLSRRLAEASHYPAIDILASISRVMSQVVTPQHRQAANRLRHLLATW  379
            +A+E+RS+LDGH+ LSR+LA  +HYPAID+L S+SRV +QV TP H + A+ +R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  380  QEIALLVRVGEYragqdadaddamarreaiaSLLCQQTDERCPLSATLSAL  430
            +E+ L++ +GEYR+G++ D D AM  R+++ + LCQ   +  ++  TLS++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

192) esaN in NC_017309


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  272 bits (1017),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 175/411 (43%), Positives = 296/411 (73%), Gaps = 13/411 (3%)

Query  32   TVGATLLRAHLPGVGLGEQCTLPDG-------SPAEVVAIEGDQALLSPYHAPLGLANGM  84
             + + ++ A+L +V++GE C +  G       + A+VV+++ ++++LS    + GL+ ++
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  85   LVTPSGAQARIGVGEALLGRVIDALGQPMDGCAP---PQAAQWRSLESPAPDPMQRAPID  141
            ++ P+G      VG ++LG V+D+ G+ ++  +P   P + + R ++ ++P    R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRVGVR  133

Query  142  TLLPMGVRAIDAALSVGVGQRLGIFSPAGCGKSTLLGMLAAHSQVDVVVLALIGERGREV  201
              L  GVRAID+ L+ GVGQR+GIF++AGCGK+ L+ ML  +++ DV V++LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  REFIEQIMSPELRARSVVILATSDRPALERIKAADTATVIAEYFRDRGHHVLLLVDSLTR  261
             EF++ + +++ + + V+++ATSD P+++R +AA+ AT +AEYFRD+G +V+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  YARAIREIALAAGEPMVSGGYPPSLYARLPRLLERAGPAACGSITAFYTVLV--EQKSDP  319
            YARA+R++ALA+GE     GYP+S++  LPRLLER+G+++ GSITAFYTVL+  E+ +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  320  LAEEVRSLLDGHIVLSRRLAEASHYPAIDILASISRVMSQVVTPQHRQAANRLRHLLATW  379
            +A+E+RS+LDGH+ LSR+LA  +HYPAID+L S+SRV +QV TP H + A+ +R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  380  QEIALLVRVGEYragqdadaddamarreaiaSLLCQQTDERCPLSATLSAL  430
            +E+ L++ +GEYR+G++ D D AM  R+++ + LCQ   +  ++  TLS++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

193) mlr6342 in NC_002678


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  272 bits (1018),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 173/408 (43%), Positives = 277/408 (68%), Gaps = 4/408 (0%)

Query  42   RAVGTLVHAVLPDTRIGELCLLQDPR--TGLSLEAEVIGLLDDGVLLTPIGDLVGLSSRA  99
            +  G +++A L D  IGELC ++  +    +   A+V+GL  +  +L+ IG+  GLS   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  100  EVVATGRMREVPVGNDLLGRVIDSRCRPLD--GKGQIETTETRPLHGRAPNPMTRRMIER  157
             + +TGR     VG  +LG V+D+  + ++         +E R ++  +P+  +R  +  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  158  PLPLGVRVLDGLLTCGEGQRIGIYGEPGGGKSTLLSQIVKGAAADVVIVALIGERGREVR  217
            PL  GVR +DGLLTCG GQR+GI++ +G GK+ L+  ++  + ADV +++LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  218  EFIERHLGEEGLRRAVVVVETSDRSAVQRAQCAPMATALAEYFREQGLRVALMLDSLTRF  277
            EF++   + +   + V+V  TSD ++V+R + A +AT++AEYFR+QG RV L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  278  CRAMREIGLAAGEPPTRRGFPPSVFSMLPGLLERAGMSERGSITAFYTVLVEGDGTGDPI  337
             RA+R+++LA+GE P+RRG+P+SVF  LP LLER+G +  GSITAFYTVL+E++  +DP+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  338  AEESRGILDGHVVLSRAIAARSHFPAIDVLQSRSRVMDAVVSRTHRKAASFFRELLSRHA  397
            A+E R+ILDGH+ LSR +A+++H+PAIDVL+S SRV + V + TH   AS  R L++R  
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  398  ETEFLINVGEYKQGGDPLTDRAVESIDELREFLRQSEDEISGFEETVA  445
            E +++I++GEY+ G +   DRA++  D L+  L Q+  + S+F++T++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

194) fliI in NC_012491


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  272 bits (1018),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 172/413 (42%), Positives = 286/413 (70%), Gaps = 7/413 (1%)

Query  27   QVVGLTIESQGPEVKLGEICHLYPANTKEPIIA--EVVGFRENKVLLMPLGELTEIGPGC  84
            ++ G  IE++  +V +GE+C++  +  +  ++A  +VVG++ ++ +L  +G+   ++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  85   DVVATGRSLDVKVGPEILGSILDGLGRPYQGSLPFGLTSYPTNNM----PPNPILRPRIQ  140
             + +TGR+L   VG  +LG++LD  G+  +   P  +++ + + +    PP+   R  ++
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP-EVAPISEERVIDVAPPSYASRVGVR  133

Query  141  EPLSVGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTTADINVIGLIGERGREV  200
            EPL  GVRAIDGLLT G GQR+GIFA++G GK+ LM M+  +T AD+ VIGLIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  201  MEFIERDLGEEGLKRSVVVVATSDQPAMIRIKGAMIATSIAEYFRDRGMNVMLMMDSVTR  260
             EF++   + +   + V+V ATSD P++ R ++A +AT++AEYFRD+G  V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  261  FAMAQREVGLAIGEPPATRGYTPSVFAMLPKLMERAGTADKGSITAFYTVLVDSDDMNDP  320
            +A A R+V+LA GE PA RGY +SVF  LP+L+ER+G++  GSITAFYTVL++S++  DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  321  IADAVRGILDGHIVLDRKIAHKGHFPAIDVMASVSRVMNEIVDSNHLDAARQLKKHLATF  380
            +AD +R+ILDGH+ L RK+A +GH+PAIDV+ SVSRV  ++  + H + A  ++K ++ +
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  381  REAEDLINIGAYKPGSNREIDAAIRYRDIISGFTAQGTHEPSTLQGAIQALTA  433
             E + +I++G Y+PG N + D A++ RD + +   Q   + S++++++ ++ A
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

195) Desca_1795 in NC_015565


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  272 bits (1019),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 178/431 (42%), Positives = 294/431 (69%), Gaps = 4/431 (0%)

Query  16   VNRARVLKPIGMVTRVIGLMIEVQGISARIGEVCDILVDGEPEPV--RAEVVGFRDQHSL  73
            ++ +R+L+ ++   ++ G +IE +     IGE+C+I  + +   V  RA+VVG++ ++++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  74   LMPLGELRGIYPGSAVVPSGRTLTVKVGEHLRGKVLDGLGRPLE--GDIHNGQAEDFPVD  131
            L  +G+ +G+  +  + P+GR+L+  VG  + G VLD  G+ +E         +E+  +D
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  132  NRPPNPLKRKRIDTVLPTGVRAVDALLTCGKGQRIGIFAGSGVGKSTLLGMIARHGGADV  191
              PP+   R  +   L TGVRA+D+LLTCG GQR+GIFA++G GK+ L+ M+  +  ADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  192  NVIGLIGERGREVLEFLEEDLGPEGMAKSIVVAATSDQPALVRLKGAFVATAIAEYFRDR  251
             VIGLIGERGREV EF++   +++   K ++V ATSD P++ R ++A +AT++AEYFRD+
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  252  GLDVMLMMDSVTRFAMAQREVGLAVGEPPATKGYTPSVFALLPKLLERSGMGQNGSITAF  311
            G  V+L +DS+TR+A A R+V+LA GE PA +GY +SVF  LP+LLER+G   +GSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  312  YTVLVDGDDLNEPIADAVRGILDGHIVLNRSLASRNHYPAIDVLQSVSRLMPDIVSEEHK  371
            YTVL+++++  +P+AD +R+ILDGH+ L+R LA++ HYPAIDVL+SVSR+  ++ +  H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  372  AQAGMVKDLLAAYLQAEDLINIGAYVKGSNPKIDAAIAKYDGIINFLRQQPGEFSSYEET  431
             QA+ V+ L++   + + +I++G Y  G N   D A+   D++   L Q  +++SS+++T
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  432  LNGLASLVAED  442
            L+G+ ++  ++
Sbjct  421  LSGMNAFADQN  431

196) hrcN in NC_014323


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  272 bits (1016),  Expect = 5e-74, Method: Compositional matrix adjust.
 Identities = 191/419 (46%), Positives = 289/419 (69%), Gaps = 6/419 (1%)

Query  44   QVLGTLIEAHMPPVQIGELCNLFNP-EQPGKTMLAEVVGFTDKASILSALSPLEGVSTRT  102
            ++ G +IEA++  V IGELC++    +Q      A+VVG+    ++LS ++  +G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  103  VIEPLRRSHSIEVGDHLFGCVLDGFGRWMFRAPAAQENVATWRAMSPVIRDAPPA-TSRP  161
            V+ P  R+ S  VG  ++G VLD  G+ + R  +    ++       VI  APP+ +SR 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE----ERVIDVAPPSYASRV  130

Query  162  RIATPLPTGVRAIDGLLTMGMGQRIGVFAGPGCGKTTLMAAIARGCQAEAIVFGLIGERG  221
             +  PL TGVRAIDGLLT G+GQR+G+FA++GCGKT LM  +    +A+ +V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  222  RELNEFLDHELDAELIRKTVVVCATSDRTSMERSRAAFTATAIAEGFRDRGMKVLLLVDS  281
            RE+ EF+D    ++   K V+V ATSD  S++R  AA  AT++AE FRD+G +V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  282  LTRFARAQREIGLAAGEPPARGGFTPSVYTMLPRLIERAGGTPQGSITAMYTVLVDGESS  341
            +TR+ARA R+++LA+GE PAR G+ +SV+  LPRL+ER+G+T++GSITA YTVL+++E  
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  342  SDPIGDEAKSLLDGHILLTRKLAEQGHYPAIDVLASISRVMSNVTSREHRRAASRFRELL  401
            +DP++DE +S+LDGH+ L+RKLA QGHYPAIDVL S+SRV ++VT+  H   AS  R L+
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  402  ARYQEMELLIRLGEYKSGADPVADRAMELRPEQLSFLRQDTSGSADFQETLDTLMEMAQ  460
            +R +E++L+I LGEY++G +   DRAM++R    + L Q  +  + F++TL  +   A+
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

197) CV_2603 in NC_005085


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  271 bits (1015),  Expect = 5e-74, Method: Compositional matrix adjust.
 Identities = 176/409 (44%), Positives = 295/409 (73%), Gaps = 8/409 (1%)

Query  39   IGPTLLKASLPGASLSELCRL------EPSGIEAEVVAVTGDHVMLSPFKEPLGVTIGSR  92
            I   ++ A L + +++ELC +            A+VV++  ++ +LS + ++ G++ +  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  93   VRPSGSPHQLRLGDFLLGRVVDGLGRPLD--GDELPADSELRSLDGPAPNPLTRQLIDTP  150
            + P+G +   ++G  +LG V+D  G+ ++    E+++ SE R +D ++P+  +R  +  P
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  151  LPLGVRAIDGLLTCGMGQRIGIFAAAGGGKSTLLGMICDGSLADVIVLALIGERGREVRE  210
            L  GVRAIDGLLTCG+GQR+GIFA+AG GK+ L+ M+ + + ADV+V++LIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  211  FLEHTLSEEARSRSIVVVSTSDRPALERLKAAYTATAIAEHFRDQGKNVLLMMDSLTRFA  270
            F++   + + + + ++V +TSD P+++R +AA  AT++AE FRDQGK V+L +DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  271  RASREIGLaagepaaaggyppSFFARLPRLLERAGPAETGSITGIYTVLVEGDNLNEPVA  330
            RA R+++LA+GE +A  GYP+S F  LPRLLER+G++  GSIT++YTVL+E+++  +P+A
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  331  DEVRSILDGHIVLSRKLAETNHYPAIDIGASVSRIMGQIVSAEHRQQAGKLRRLMAAYKE  390
            DE+RSILDGH+ LSRKLA   HYPAID+  SVSR+ GQ+ ++ H +QA+ +R+LM+   E
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  391  IELLVRVGEYQPGQDAEADEALERKDAIRQFLCQSVTEKNDFEETLEQL  439
            ++L++ +GEY+PG++ + D A++ +D+++  LCQ+V++ + F++TL  +
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

198) Bcep1808_5335 in NC_009255


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  271 bits (1013),  Expect = 7e-74, Method: Compositional matrix adjust.
 Identities = 174/405 (43%), Positives = 288/405 (72%), Gaps = 11/405 (2%)

Query  68   LGEICELRTPNQPTLL---AEVVGFSRQTTLLTPLGDVAGLSPETTVVPSGREHV----F  120
            +GE+CE+R   +   +   A+VVG+ R+ T+L+ +G+  GLS +  + P+GR       +
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY  89

Query  121  AVGDALFgrvldglgrplddlgpvTGAAWVSTQQDPPNPLARKLIDTPFPTGVRVIDGLM  180
            +V +A+++     + R   +++P++       +  PP+  +R  +  P+ TGVR IDGL+
Sbjct  90   SVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  181  TLGVGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVREFIEHSLSPEVRA  240
            T GVGQR+GIFA++G GK+ L+ M+   ++ADV VI+L+GERGREV EF++   +++ + 
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  241  RSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFARAQREVGLASGE  300
            + ++V +TSD P+++R ++A +AT++AE FRD GKRV+L++DS+TR+ARA R+V+LASGE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  301  PPTRRSFPPSTFAVLPRLLERAGQGARGSITALYTVLVEGDEESDPIAEEVRSILDGHIV  360
             P+RR++P+S F  LPRLLER+G  + GSITA+YTVL+E++EE+DP+A+E+RSILDGH+ 
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  361  LSRKIALANRYPAIDVLASLSRVMPLVASRAHQQAAARVRELIAKYQEIELLVQIGEYRE  420
            LSRK+A   +YPAIDVL S+SRV   V++ +H + A+ VR L+++ +E++L++++GEYR 
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  421  GSDRLGDLALRARDAIGAF-CAQASHEDVRFDALLAKLTRLANDH  464
            G +   D A++ RD++ A  C   ++    FD  L+ +  +A+++
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYS-SFDDTLSGMNAFADQN  431

199) Cphy_2714 in NC_010001


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  271 bits (1013),  Expect = 7e-74, Method: Compositional matrix adjust.
 Identities = 168/416 (41%), Positives = 286/416 (69%), Gaps = 6/416 (1%)

Query  24   KVVGLTVESIGPDASVNDLCEII--SQDKSIVVKAEVIGFRDDKLLLMPYDDITGIGVGS  81
            K+ G  +E+   D ++ +LCEI    ++K +V +A+V+G++ ++ +L   ++  G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  82   MVLNKKEPLLVKVGDELLGQTLDGLGNPMDM---STLSLSESYPVDAKAPDPMDRELIGE  138
            ++     +L   VG  +LG  LD  G+ ++       ++SE   +D  +P    R  + E
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  139  VLSLGVRAVDGLLTIGKGQRIGIFAGSGVGKSTLLGMFARNTKADINVIALIGERGREVK  198
             L  GVRA+DGLLT G GQR+GIFA++G GK+ L+ M+  +T AD+ VI+LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  199  EFIERDLGPEGVKRSVLVIATSDKPALIRkkaaktataiaEYFRDKGKDVLLMMDSLTRF  258
            EF++   +++   + VLV+ATSD P++ R +AA+ AT++AEYFRD+GK V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  259  SMAQREIGLASGEPPVSRGYPPSVYSEMPKLLERAGNSDKGSITGLYTVLVDGDDFNEPI  318
            + A R+++LASGE P  RGYP+SV+ ++P+LLER+G +  GSIT++YTVL+++++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  319  TDTARGILDGHIVLSRKMAQKNHYPAIDVLASISRVMSAIATSEHKKLAGKLKMVLATYQ  378
            +D  R+ILDGH+ LSRK+A + HYPAIDVL S+SRV + ++T+ H   A+ ++ +++  +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  379  DAEDLINIGAYKPGTNKNIDYSMRKIEQVNEFLCQQVDDKADFEDTIHKLESIFED  434
            + + +I++G Y+PG N + D +M+  + ++  LCQ V + + F+DT+  +++ F D
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA-FAD  429

200) MYA_4956 in NC_017921


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  271 bits (1012),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 175/405 (44%), Positives = 288/405 (72%), Gaps = 11/405 (2%)

Query  70   LGEICELRTPNQPTLL---AEVVGFSRQTTLLTPLGDVAGLSPETTVVPSGREHV----F  122
            +GE+CE+R   +   +   A+VVG+ R+ T+L+ +G+  GLS +  + P+GR       +
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY  89

Query  123  AVGDALFgrvldglgrplddlgpvTGAAWVSTQQDPPNPLARKLIDTPFPTGVRVIDGLM  182
            +V +A+++     + R   +++P++       +  PP+  +R  +  P+ TGVR IDGL+
Sbjct  90   SVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  183  TLGVGQRVGIFAPSGVGKSTLLGMIARGAQADVNVIALVGERGREVREFIEHSLSPEVRA  242
            T GVGQR+GIFA++G GK+ L+ M+   ++ADV VI+L+GERGREV EF++   +++ + 
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  243  RSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFARAQREVGLASGE  302
            + ++V +TSD P+++R ++A +AT++AE FRD GKRV+L++DS+TR+ARA R+V+LASGE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  303  PPTRRSFPPSTFAVLPRLLERAGQGARGSITALYTVLVEGDEESDPIAEEVRSILDGHIV  362
             P+RR++P+S F  LPRLLER+G  + GSITA+YTVL+E++EE+DP+A+E+RSILDGH+ 
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  363  LSRKIALANRYPAIDVLASLSRVMPLVASRTHQHAAARVRELIAKYQEIELLVQIGEYRE  422
            LSRK+A   +YPAIDVL S+SRV   V++ TH + A+ VR L+++ +E++L++++GEYR 
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  423  GSDRLGDLALRARDAIGAF-CAQASHEDVRFDALLAKLTRLANDH  466
            G +   D A++ RD++ A  C   ++    FD  L+ +  +A+++
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYS-SFDDTLSGMNAFADQN  431

201) Thit_1232 in NC_013921


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  271 bits (1012),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 175/420 (42%), Positives = 274/420 (66%), Gaps = 5/420 (1%)

Query  13   LQEKRLIQYYGKVSQVIGLTIESTGPLSNIGEICNIKTTNGN---IISAEVVGFKEEKVY  69
            ++  RL+QY +   ++ G  IE+      IGE+C+I+    +   +  A+VVG++ E+  
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  70   LMPLGNMEGIGAGSKVIATGQTLRVSVGKELLGRILDGLGNPIDSKGP--VKFEKSIPIN  127
            L  +GN +G++ +  + +TG++L   VG  +LG +LD  G+ ++   P    +     I+
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  128  NVPPDPLERKRIREVMPLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKADL  187
              PP    R  +RE +  G++AIDGLLTCG GQR+GIFA++G GK+ L+ M+  ++ AD+
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  188  NVIALIGERGREVNEFLEKDLGEEGLKKSVVVVATSDTPALIRVKGAMTATAIAEYFRDQ  247
             VI+LIGERGREV EF++   + +   K V+V ATSD P++ R ++A  AT++AEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  248  GLDVLLMMDSVTRFAMAQREVGLSIGEAPVSRGYTPSVFSVLPKLLERSGCSKKGSITAL  307
            G  V+L +DS+TR+A A R+V+L+ GE P  RGY +SVF  LP+LLER+G +  GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  308  YTVLVDGDDLNEPIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVMNDIITEEHK  367
            YTVL+++++  +P+AD +R+ILDGH+ LSRKLA + HYPAIDVL SVSRV  ++ T  H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  368  ELIARFKDILASYTEAEDLINIGAYNFGSNPKIDEAIELNDKMNNFLRQRIDESYDFETT  427
            E  +  + +++   E + +I++G Y  G N   D A+++ D ++  L Q + +   F+ T
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

202) Tmath_1283 in NC_014209


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  271 bits (1012),  Expect = 9e-74, Method: Compositional matrix adjust.
 Identities = 175/420 (42%), Positives = 274/420 (66%), Gaps = 5/420 (1%)

Query  13   LQEKRLIQYYGKVSQVIGLTIESTGPLSNIGEICNIKTTNGN---IISAEVVGFKEEKVY  69
            ++  RL+QY +   ++ G  IE+      IGE+C+I+    +   +  A+VVG++ E+  
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  70   LMPLGNMEGIGAGSKVIATGQTLRVSVGKELLGRILDGLGNPIDSKGP--VKFEKSIPIN  127
            L  +GN +G++ +  + +TG++L   VG  +LG +LD  G+ ++   P    +     I+
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  128  NVPPDPLERKRIREVMPLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKADL  187
              PP    R  +RE +  G++AIDGLLTCG GQR+GIFA++G GK+ L+ M+  ++ AD+
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  188  NVIALIGERGREVNEFLEKDLGEEGLKKSVVVVATSDTPALIRVKGAMTATAIAEYFRDQ  247
             VI+LIGERGREV EF++   + +   K V+V ATSD P++ R ++A  AT++AEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  248  GLDVLLMMDSVTRFAMAQREVGLSIGEAPVSRGYTPSVFSVLPKLLERSGCSKKGSITAL  307
            G  V+L +DS+TR+A A R+V+L+ GE P  RGY +SVF  LP+LLER+G +  GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  308  YTVLVDGDDLNEPIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVMNDIITEEHK  367
            YTVL+++++  +P+AD +R+ILDGH+ LSRKLA + HYPAIDVL SVSRV  ++ T  H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  368  ELIARFKDILASYTEAEDLINIGAYNFGSNPKIDEAIELNDKMNNFLRQRIDESYDFETT  427
            E  +  + +++   E + +I++G Y  G N   D A+++ D ++  L Q + +   F+ T
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

203) Thebr_1283 in NC_014964


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  270 bits (1009),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 178/422 (43%), Positives = 280/422 (67%), Gaps = 9/422 (2%)

Query  8    LQEKRLIQYYGKVSQVIGLTIESTGPLSNIGEICNIK-TINGNTILA--EVVGFKEEKVY  64
            ++  RL+QY +   ++ G  IE+      IGE+C+I+   + + ++A  +VVG++ E+  
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  65   LMPLGNMEGIGAGSKVIATGQTLRVNVGNELLGRVLDGLGNPID----GKGPIKFEKSIP  120
            L  +GN +G++ +  + +TG++L   VG  +LG VLD  G+ ++      +PI  E+ I 
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  INNVPPDPLERKRIREVMSLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKA  180
            +   PP    R  +RE +  G++AIDGLLTCG GQR+GIFA++G GK+ L+ M+  ++ A
Sbjct  121  VA--PPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  181  DLNVIALIGERGREVNEFLEKDLGEEGLKKSVVVVATSDTPALIRVKGAMTATAIAEYFR  240
            D+ VI+LIGERGREV EF++   + +   K V+V ATSD P++ R ++A  AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  241  DQGLDVLLMMDSVTRFAMAQREVGLSIGEAPVSRGYTPSVFSVLPKLLERSGCSKKGSIT  300
            DQG  V+L +DS+TR+A A R+V+L+ GE P  RGY +SVF  LP+LLER+G +  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  301  ALYTVLVDGDDLNEPIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVINDIITEE  360
            A+YTVL+++++  +P+AD +R+ILDGH+ LSRKLA + HYPAIDVL SVSRV+ ++ T  
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  361  HKELIARFKDILATYTEAEDLINIGAYNFGSNPKIDEAIELNDKMNNFLRQRIDESYDFE  420
            H E  +  + +++   E + +I++G Y  G N   D A+++ D ++  L Q + +   F+
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  421  TT  422
             T
Sbjct  419  DT  420

204) Teth39_1254 in NC_010321


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  270 bits (1009),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 178/422 (43%), Positives = 280/422 (67%), Gaps = 9/422 (2%)

Query  13   LQEKRLIQYYGKVSQVIGLTIESTGPLSNIGEICNIK-TINGNTILA--EVVGFKEEKVY  69
            ++  RL+QY +   ++ G  IE+      IGE+C+I+   + + ++A  +VVG++ E+  
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  70   LMPLGNMEGIGAGSKVIATGQTLRVNVGNELLGRVLDGLGNPID----GKGPIKFEKSIP  125
            L  +GN +G++ +  + +TG++L   VG  +LG VLD  G+ ++      +PI  E+ I 
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  126  INNVPPDPLERKRIREVMSLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKA  185
            +   PP    R  +RE +  G++AIDGLLTCG GQR+GIFA++G GK+ L+ M+  ++ A
Sbjct  121  VA--PPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  186  DLNVIALIGERGREVNEFLEKDLGEEGLKKSVVVVATSDTPALIRVKGAMTATAIAEYFR  245
            D+ VI+LIGERGREV EF++   + +   K V+V ATSD P++ R ++A  AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  246  DQGLDVLLMMDSVTRFAMAQREVGLSIGEAPVSRGYTPSVFSVLPKLLERSGCSKKGSIT  305
            DQG  V+L +DS+TR+A A R+V+L+ GE P  RGY +SVF  LP+LLER+G +  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  306  ALYTVLVDGDDLNEPIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVINDIITEE  365
            A+YTVL+++++  +P+AD +R+ILDGH+ LSRKLA + HYPAIDVL SVSRV+ ++ T  
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  366  HKELIARFKDILATYTEAEDLINIGAYNFGSNPKIDEAIELNDKMNNFLRQRIDESYDFE  425
            H E  +  + +++   E + +I++G Y  G N   D A+++ D ++  L Q + +   F+
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  426  TT  427
             T
Sbjct  419  DT  420

205) Thet_1210 in NC_014538


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  270 bits (1009),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 178/422 (43%), Positives = 280/422 (67%), Gaps = 9/422 (2%)

Query  8    LQEKRLIQYYGKVSQVIGLTIESTGPLSNIGEICNIK-TINGNTILA--EVVGFKEEKVY  64
            ++  RL+QY +   ++ G  IE+      IGE+C+I+   + + ++A  +VVG++ E+  
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  65   LMPLGNMEGIGAGSKVIATGQTLRVNVGNELLGRVLDGLGNPID----GKGPIKFEKSIP  120
            L  +GN +G++ +  + +TG++L   VG  +LG VLD  G+ ++      +PI  E+ I 
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  121  INNVPPDPLERKRIREVMSLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKA  180
            +   PP    R  +RE +  G++AIDGLLTCG GQR+GIFA++G GK+ L+ M+  ++ A
Sbjct  121  VA--PPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  181  DLNVIALIGERGREVNEFLEKDLGEEGLKKSVVVVATSDTPALIRVKGAMTATAIAEYFR  240
            D+ VI+LIGERGREV EF++   + +   K V+V ATSD P++ R ++A  AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  241  DQGLDVLLMMDSVTRFAMAQREVGLSIGEAPVSRGYTPSVFSVLPKLLERSGCSKKGSIT  300
            DQG  V+L +DS+TR+A A R+V+L+ GE P  RGY +SVF  LP+LLER+G +  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  301  ALYTVLVDGDDLNEPIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVINDIITEE  360
            A+YTVL+++++  +P+AD +R+ILDGH+ LSRKLA + HYPAIDVL SVSRV+ ++ T  
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  361  HKELIARFKDILATYTEAEDLINIGAYNFGSNPKIDEAIELNDKMNNFLRQRIDESYDFE  420
            H E  +  + +++   E + +I++G Y  G N   D A+++ D ++  L Q + +   F+
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  421  TT  422
             T
Sbjct  419  DT  420

206) Teth514_1690 in NC_010320


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  270 bits (1009),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 178/422 (43%), Positives = 280/422 (67%), Gaps = 9/422 (2%)

Query  13   LQEKRLIQYYGKVSQVIGLTIESTGPLSNIGEICNIK-TINGNTILA--EVVGFKEEKVY  69
            ++  RL+QY +   ++ G  IE+      IGE+C+I+   + + ++A  +VVG++ E+  
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  70   LMPLGNMEGIGAGSKVIATGQTLRVNVGNELLGRVLDGLGNPID----GKGPIKFEKSIP  125
            L  +GN +G++ +  + +TG++L   VG  +LG VLD  G+ ++      +PI  E+ I 
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  126  INNVPPDPLERKRIREVMSLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKA  185
            +   PP    R  +RE +  G++AIDGLLTCG GQR+GIFA++G GK+ L+ M+  ++ A
Sbjct  121  VA--PPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  186  DLNVIALIGERGREVNEFLEKDLGEEGLKKSVVVVATSDTPALIRVKGAMTATAIAEYFR  245
            D+ VI+LIGERGREV EF++   + +   K V+V ATSD P++ R ++A  AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  246  DQGLDVLLMMDSVTRFAMAQREVGLSIGEAPVSRGYTPSVFSVLPKLLERSGCSKKGSIT  305
            DQG  V+L +DS+TR+A A R+V+L+ GE P  RGY +SVF  LP+LLER+G +  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  306  ALYTVLVDGDDLNEPIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVINDIITEE  365
            A+YTVL+++++  +P+AD +R+ILDGH+ LSRKLA + HYPAIDVL SVSRV+ ++ T  
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  366  HKELIARFKDILATYTEAEDLINIGAYNFGSNPKIDEAIELNDKMNNFLRQRIDESYDFE  425
            H E  +  + +++   E + +I++G Y  G N   D A+++ D ++  L Q + +   F+
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  426  TT  427
             T
Sbjct  419  DT  420

207) FliI in NC_003869


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  269 bits (1007),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 176/422 (42%), Positives = 284/422 (68%), Gaps = 9/422 (2%)

Query  13   LREKRLVGYYGKVSQVIGLTIESVGPLSNIGEICYIK-TIDGNEVLA--EVVGFKEEKVY  69
            ++  RL+ Y +   ++ G  IE+      IGE+C I+   + ++V+A  +VVG++ E+  
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  70   LMPLGNMEGIGPGSKVIATGQTLKVNVGKSLLGRVLDGLGNPID----GKGPLKYEKSIP  125
            L  +GN +G++ +  + +TG++L   VG S+LG VLD  G+ ++      +P+  E+ I 
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  126  VNNTPPDPLERKRIREVMPLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKA  185
            V  +PP    R  +RE +  G++AIDGLLTCG GQR+GIFA++G GK+ L+ M+  ++ A
Sbjct  121  V--APPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  186  DLNVIALIGERGREVNEFIEKDLGEEGLKRSVVVVATSDTPALVRVKGAMTATAIAEYFR  245
            D+ VI+LIGERGREV EF++   + +   + V+V ATSD P++ R ++A  AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  246  DQGLDVLLMMDSITRFAMAQREIGLSIGEAPVSRGYTPSVFSVLPKLLERSGSSQKGSIT  305
            DQG  V+L +DS+TR+A A R+++L+ GE P  RGY +SVF  LP+LLER+G++  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  306  ALYTVLVDGDDLNEPIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVINDIITDE  365
            A+YTVL+++++  +P+AD +R+ILDGH+ LSRKLA + HYPAIDVL SVSRV+ ++ T  
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  366  HKELVAKFKNILATYAEAEDLINIGAYNFGTNPKIDEAIELNEKMNSFLRQKIDEAYDFE  425
            H E  +  +++++   E + +I++G Y  G N   D A+++ + +++ L Q + +   F+
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  426  TT  427
             T
Sbjct  419  DT  420

208) sctN in NC_017832


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  269 bits (1005),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 183/431 (43%), Positives = 306/431 (71%), Gaps = 11/431 (2%)

Query  24   VRTGRVLEVIGTLIKVSGL-------DVALGELCELRT--REGRLLQRAEVVGFTRDVAL  74
            ++T R+L+ ++   K++G        DVA+GELCE+R   ++ +++ RA+VVG+ R+ ++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  75   LSPFSQLEQISRTTQVIGLGRPLSIPVGDALLGRVIdglgepldg-gpplASETLQPLIA  133
            LS +++ + +SR   +   GR+LS  VG ++LG V+D  G  ++   P +A+ + + +I 
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  134  APPEPMSRRM-IDAAMPTGVRVVDAMMALGEGQRMGIFAPAGVGKSTLLGMFARGAACDV  192
             +P + + R+ +  ++ TGVR +D++++ G GQRMGIFA+AG GK+ L+ M+   +  DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  193  NVIALIGERGREVREFIELILGQAGMARSVVVCATSDRSSMERakaayaataiaEYFRDR  252
             VI+LIGERGREV EF++++ +     + V+V ATSD +S++R +AA  AT++AEYFRD+
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  253  GRRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGRTGSITAL  312
            G+RV+L +DS+TR+ARA R+++LA+GE PARRG+P+SVF +LPRLLER+G    GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  313  YTVLAEDESGSDPVAEEVRGILDGHMILSREVAAKNQYPAIDVLGSLSRVMPLVVDDGHM  372
            YTVL E E  +DP+A+E+R+ILDGH+ LSR +A++ +YPAIDVL S+SRV   V    H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  373  RAAARVRELLAKHREVEVLLQIGEYKAGANPLADEAIAKADAIRSFFSQRTDDYAAAEDT  432
              A+ VR L+++  E+++++++GEY++G N   D A+   D++++ + Q   +Y++ +DT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  433  IARLYALSGAN  443
            ++ + A+++ N
Sbjct  421  LSGMNAFADQN  431

209) BURPS1710b_A0422 in NC_007435


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  269 bits (1006),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 183/431 (43%), Positives = 306/431 (71%), Gaps = 11/431 (2%)

Query  30   VRTGRVLEVIGTLIKVSGL-------DVALGELCELRT--REGRLLQRAEVVGFTRDVAL  80
            ++T R+L+ ++   K++G        DVA+GELCE+R   ++ +++ RA+VVG+ R+ ++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  81   LSPFSQLEQISRTTQVIGLGRPLSIPVGDALLGRVIdglgepldg-gpplASETLQPLIA  139
            LS +++ + +SR   +   GR+LS  VG ++LG V+D  G  ++   P +A+ + + +I 
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  140  APPEPMSRRM-IDAAMPTGVRVVDAMMALGEGQRMGIFAPAGVGKSTLLGMFARGAACDV  198
             +P + + R+ +  ++ TGVR +D++++ G GQRMGIFA+AG GK+ L+ M+   +  DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  199  NVIALIGERGREVREFIELILGQAGMARSVVVCATSDRSSMERakaayaataiaEYFRDR  258
             VI+LIGERGREV EF++++ +     + V+V ATSD +S++R +AA  AT++AEYFRD+
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  259  GRRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGRTGSITAL  318
            G+RV+L +DS+TR+ARA R+++LA+GE PARRG+P+SVF +LPRLLER+G    GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  319  YTVLAEDESGSDPVAEEVRGILDGHMILSREVAAKNQYPAIDVLGSLSRVMPLVVDDGHM  378
            YTVL E E  +DP+A+E+R+ILDGH+ LSR +A++ +YPAIDVL S+SRV   V    H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  379  RAAARVRELLAKHREVEVLLQIGEYKAGANPLADEAIAKADAIRSFFSQRTDDYAAAEDT  438
              A+ VR L+++  E+++++++GEY++G N   D A+   D++++ + Q   +Y++ +DT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  439  IARLYALSGAN  449
            ++ + A+++ N
Sbjct  421  LSGMNAFADQN  431

210) BURPS668_A1990 in NC_009075


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  269 bits (1005),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 183/431 (43%), Positives = 306/431 (71%), Gaps = 11/431 (2%)

Query  24   VRTGRVLEVIGTLIKVSGL-------DVALGELCELRT--REGRLLQRAEVVGFTRDVAL  74
            ++T R+L+ ++   K++G        DVA+GELCE+R   ++ +++ RA+VVG+ R+ ++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  75   LSPFSQLEQISRTTQVIGLGRPLSIPVGDALLGRVIdglgepldg-gpplASETLQPLIA  133
            LS +++ + +SR   +   GR+LS  VG ++LG V+D  G  ++   P +A+ + + +I 
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  134  APPEPMSRRM-IDAAMPTGVRVVDAMMALGEGQRMGIFAPAGVGKSTLLGMFARGAACDV  192
             +P + + R+ +  ++ TGVR +D++++ G GQRMGIFA+AG GK+ L+ M+   +  DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  193  NVIALIGERGREVREFIELILGQAGMARSVVVCATSDRSSMERakaayaataiaEYFRDR  252
             VI+LIGERGREV EF++++ +     + V+V ATSD +S++R +AA  AT++AEYFRD+
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  253  GRRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGRTGSITAL  312
            G+RV+L +DS+TR+ARA R+++LA+GE PARRG+P+SVF +LPRLLER+G    GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  313  YTVLAEDESGSDPVAEEVRGILDGHMILSREVAAKNQYPAIDVLGSLSRVMPLVVDDGHM  372
            YTVL E E  +DP+A+E+R+ILDGH+ LSR +A++ +YPAIDVL S+SRV   V    H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  373  RAAARVRELLAKHREVEVLLQIGEYKAGANPLADEAIAKADAIRSFFSQRTDDYAAAEDT  432
              A+ VR L+++  E+++++++GEY++G N   D A+   D++++ + Q   +Y++ +DT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  433  IARLYALSGAN  443
            ++ + A+++ N
Sbjct  421  LSGMNAFADQN  431

211) sctN in NC_006351


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  269 bits (1005),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 183/431 (43%), Positives = 306/431 (71%), Gaps = 11/431 (2%)

Query  30   VRTGRVLEVIGTLIKVSGL-------DVALGELCELRT--REGRLLQRAEVVGFTRDVAL  80
            ++T R+L+ ++   K++G        DVA+GELCE+R   ++ +++ RA+VVG+ R+ ++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  81   LSPFSQLEQISRTTQVIGLGRPLSIPVGDALLGRVIdglgepldg-gpplASETLQPLIA  139
            LS +++ + +SR   +   GR+LS  VG ++LG V+D  G  ++   P +A+ + + +I 
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  140  APPEPMSRRM-IDAAMPTGVRVVDAMMALGEGQRMGIFAPAGVGKSTLLGMFARGAACDV  198
             +P + + R+ +  ++ TGVR +D++++ G GQRMGIFA+AG GK+ L+ M+   +  DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  199  NVIALIGERGREVREFIELILGQAGMARSVVVCATSDRSSMERakaayaataiaEYFRDR  258
             VI+LIGERGREV EF++++ +     + V+V ATSD +S++R +AA  AT++AEYFRD+
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  259  GRRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGRTGSITAL  318
            G+RV+L +DS+TR+ARA R+++LA+GE PARRG+P+SVF +LPRLLER+G    GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  319  YTVLAEDESGSDPVAEEVRGILDGHMILSREVAAKNQYPAIDVLGSLSRVMPLVVDDGHM  378
            YTVL E E  +DP+A+E+R+ILDGH+ LSR +A++ +YPAIDVL S+SRV   V    H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  379  RAAARVRELLAKHREVEVLLQIGEYKAGANPLADEAIAKADAIRSFFSQRTDDYAAAEDT  438
              A+ VR L+++  E+++++++GEY++G N   D A+   D++++ + Q   +Y++ +DT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  439  VARLYALSGAN  449
            ++ + A+++ N
Sbjct  421  LSGMNAFADQN  431

212) BDL_4701 in NC_021877


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  269 bits (1006),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 183/431 (43%), Positives = 306/431 (71%), Gaps = 11/431 (2%)

Query  30   VRTGRVLEVIGTLIKVSGL-------DVALGELCELRT--REGRLLQRAEVVGFTRDVAL  80
            ++T R+L+ ++   K++G        DVA+GELCE+R   ++ +++ RA+VVG+ R+ ++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  81   LSPFSQLEQISRTTQVIGLGRPLSIPVGDALLGRVIdglgepldg-gpplASETLQPLIA  139
            LS +++ + +SR   +   GR+LS  VG ++LG V+D  G  ++   P +A+ + + +I 
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  140  APPEPMSRRM-IDAAMPTGVRVVDAMMALGEGQRMGIFAPAGVGKSTLLGMFARGAACDV  198
             +P + + R+ +  ++ TGVR +D++++ G GQRMGIFA+AG GK+ L+ M+   +  DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  199  NVIALIGERGREVREFIELILGQAGMARSVVVCATSDRSSMERakaayaataiaEYFRDR  258
             VI+LIGERGREV EF++++ +     + V+V ATSD +S++R +AA  AT++AEYFRD+
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  259  GRRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGRTGSITAL  318
            G+RV+L +DS+TR+ARA R+++LA+GE PARRG+P+SVF +LPRLLER+G    GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  319  YTVLAEDESGSDPVAEEVRGILDGHMILSREVAAKNQYPAIDVLGSLSRVMPLVVDDGHM  378
            YTVL E E  +DP+A+E+R+ILDGH+ LSR +A++ +YPAIDVL S+SRV   V    H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  379  RAAARVRELLAKHREVEVLLQIGEYKAGANPLADEAIAKADAIRSFFSQRTDDYAAAEDT  438
              A+ VR L+++  E+++++++GEY++G N   D A+   D++++ + Q   +Y++ +DT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  439  IARLYALSGAN  449
            ++ + A+++ N
Sbjct  421  LSGMNAFADQN  431

213) Cbei_4265 in NC_009617


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  269 bits (1005),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 173/411 (43%), Positives = 282/411 (69%), Gaps = 5/411 (1%)

Query  28   KKVIGLTIEVQGIKAFVGELCII---YNEKNVPVNCEVVGFRDEFVILMPLDELIGISPG  84
            +K+ G  IE +     +GELC I    ++K+V    +VVG++ E  +L  +++  G+S +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   CRVVPQRKPLSVKCSDKLLGHIIDGLGNPLD--CDSISMDGEEYPLENDAPDPLKRKRIK  142
              + P  ++LS   +  +LG ++D  G+ ++     ++  +EE  ++  +P    R  ++
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  143  EIMPTGVRAIDGFLTCGDGQRIGIFAGSGVGKSTTLGMIAREAKADVNVISLIGERGREV  202
            E + TGVRAIDG+LTCG GQR+GIFA++G GK+  + M+  ++ ADV VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  203  LEFIEKDLGPEGMKKSVVVCATSDKPALIRIKGALTATAIAEYFRDKGKKVILMMDSVTR  262
             EF++   +++   K V+V ATSD P++ R ++A  AT++AEYFRD+GK+V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  263  FAMAQREVGLAIGEPPATKGYTPSVFAKLPKLMERSGTSADGSITAFYTVLVDGDDFNEP  322
            +A A R+V+LA GE PA +GY +SVF +LP+L+ER+G++++GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  323  IADAVRGILDGHIVLSRSLAHKNHYPAIDILNSVSRLMNTIAPKEHKEAASMARDLLATY  382
            +AD +R+ILDGH+ LSR LA + HYPAID+L+SVSR+   ++   H E AS  R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  383  KDSEDLINIGAYVKGSNKKIDMAINYNDSLNDFLCQGIDERTSFEGTQNSL  433
             + + +I++G Y  G N   D A++  DSL+  LCQ + + +SF++T +++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

214) Lcho_1019 in NC_010524


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  269 bits (1007),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 179/429 (42%), Positives = 285/429 (67%), Gaps = 37/429 (8%)

Query  33   RVSGLVLEAAGIRMPVGSLCEVQMA---GQPPVPAEVVGFAGDRAYLMPTGEVQGLVSGA  89
            +++G ++EA    +++G LCE++ +    Q    A+VVG+  +R+ L   G+ QGL  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  90   TVVPLETPVQAPVLGRTAHPWRRNEDRSRHLPVGDGLLGRVVDANGEPMDRLGPLQDVHP  149
             + P          GR+  +W           VG ++LG V+D+ G  ++R+ P  +V P
Sbjct  75   VLYPT---------GRALSAW-----------VGYSVLGAVLDPTGKIVERFTP--EVAP  112

Query  150  QPLAR----RPINAMDRDPVRTPLDTGVRSINALLTVGRGQRLGLFAGTGVGKSVLLGMM  205
             +  R     P +   R  VR PL TGVR+I++LLT G GQR+G+FA++G GK++L+ M+
Sbjct  113  ISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHML  172

Query  206  ARYTEADVIVVGLIGERGREVKEFIEDILGEEGRARSVVVAAPADSPPLTRMQGATYATA  265
               TEADV+V+GLIGERGREV EF++ + + + + + V+V A +D P++ R ++A  AT+
Sbjct  173  IEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATT  232

Query  266  IAEYFRDQGRHVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSCFAKLPQLVERSGNG  325
            +AEYFRDQG++V+L++DS+TR+A A R++ALA GE PA +GYP+S F +LP+L+ER+G  
Sbjct  233  VAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-  291

Query  326  QKGQGSITAFYTVLSEGDDQQDPIADAARGILDGHIVLSRELAESGHYPAIDIEKSISRV  385
              ++GSITAFYTVL E++++ DP+AD  R+ILDGH+ LSR LA  GHYPAID+ KS+SRV
Sbjct  292  -TSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRV  350

Query  386  MTSVAAREHIEAARRMRQLLSRVNKARDLIQLGAYAPGHDAELDAAVRAQPAIVALLQQD  445
               V++  H E A  +R+L++R++  + +I+LG Y PG++ + D A++ + ++       
Sbjct  351  FGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSL------K  404

Query  446  TWSCAPLAD  454
            +W C P+A+
Sbjct  405  AWLCQPVAQ  413

215) Thewi_1394 in NC_015958


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  269 bits (1006),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 177/422 (42%), Positives = 281/422 (67%), Gaps = 9/422 (2%)

Query  12   LQEKRLIQYYGKVSQVIGLTIESTGPLSNIGEICNIK-TINGNTILA--EVVGFKEEKVY  68
            ++  RL+QY +   ++ G  IE+      IGE+C+I+   + + ++A  +VVG++ E+  
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  69   LMPLGNMEGIGAGSKVIATGQTLRINVGNELLGRVLDGLGNPID----GKGPIKFEKSIP  124
            L  +GN +G++ +  + +TG++L   VG  +LG VLD  G+ ++      +PI  E+ I 
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  125  INNVPPDPLERKRIREVIPLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKA  184
            +   PP    R  +RE +  G++AIDGLLTCG GQR+GIFA++G GK+ L+ M+  ++ A
Sbjct  121  VA--PPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  185  DLNVIALIGERGREVNEFLEKDLGEEGLKKSVVVVATSDTPALIRVKGAMTATAIAEYFR  244
            D+ VI+LIGERGREV EF++   + +   K V+V ATSD P++ R ++A  AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  245  DQGLDVLLMMDSVTRFAMAQREVGLSIGEAPVSRGYTPSVFSVLPKLLERSGCSKKGSIT  304
            DQG  V+L +DS+TR+A A R+V+L+ GE P  RGY +SVF  LP+LLER+G +  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  305  ALYTVLVDGDDLNEPIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVINDIITEE  364
            A+YTVL+++++  +P+AD +R+ILDGH+ LSRKLA + HYPAIDVL SVSRV+ ++ T  
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  365  HKELIARFKDILATYTEAEDLINIGAYNFGSNPKIDEAIELNEKMNSFLRQRIDESYDFE  424
            H E  +  + +++   E + +I++G Y  G N   D A+++ + +++ L Q + +   F+
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  425  TT  426
             T
Sbjct  419  DT  420

216) Moth_0774 in NC_007644


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  268 bits (1003),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 176/413 (43%), Positives = 292/413 (71%), Gaps = 6/413 (1%)

Query  28   RVTGLTIEARGLKAAIGELCRI---YNNGSGPIVAEVVGFREEVTLLMPLGELEGIGPGC  84
            ++TG  IEA     AIGELC I    ++      A+VVG++ E T+L  +G+ +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  85   RVIATGRGHYIRVGEELLGRVLDGLGRSLD---GTVLVSGDPQpvnnrppnplsrrrIKE  141
             + +TGR+   +VG  +LG VLD  G+ ++     V   ++ + ++  PP+  SR  ++E
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  142  VLATGVKAIDALLTCGCGQRVGIFAGSGVGKSTLLGMIARHSTADINVIALIGERGREVR  201
             L TGV+AID+LLTCG GQR+GIFA++G GK+ L+ M+  ++ AD+ VI+LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  202  DFIEGDLGPEGLARSIVVAATSDQPALVRIKGAFTATAIAEYFRDQGKNVLLMMDSLTRF  261
            +F++   +++   + ++V ATSD P++ R ++A  AT++AEYFRDQGK V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  262  AIAQREVGLAIGEPPTTRGYTPSVFASLPKLVERAGNGERGSITGLYTVLVEGDDMNEPV  321
            A A R+V+LA GE P+ RGY +SVF +LP+L+ER+G    GSIT++YTVL+E+++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  322  ADTVRGLLDGHIVLSRRLAAANHYPAIDVLQSISRLMPEITSREQQEQAGKLRDLLAAYQ  381
            AD +R++LDGH+ LSR+LA+  HYPAIDVL+S+SR+  ++T+  + EQA+ +R L++  +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  382  EAADLIEIGAYQAGSNPRVDAALKYHEAIQSFLRQGKDEYFAFQDTLAALAGI  434
            E   +I++G Y++G N   D A++ ++++++ L Q   +Y +F+DTL+++ ++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

217) fliI in NC_020291


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  268 bits (1003),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 172/411 (42%), Positives = 281/411 (69%), Gaps = 5/411 (1%)

Query  28   KKVIGLTIEVQGIKAFVGELCII---YNERNFPVNCEVVGFKEEFVILMPLDELIGISPG  84
            +K+ G  IE +     +GELC I    ++++     +VVG++ E  +L  +++  G+S +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   CRVVPQRKPLSIKCSDKLLGHIIDGLGKPLD--CDSISMDGEEYPLENEAPDPLKRKRIK  142
              + P  ++LS   +  +LG ++D  GK ++     ++  +EE  ++  +P    R  ++
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  143  EIMPTGVRAIDGFLTCGDGQRIGIFAGSGVGKSTTLGMIAREAKADVNVISLIGERGREV  202
            E + TGVRAIDG+LTCG GQR+GIFA++G GK+  + M+  ++ ADV VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  203  LEFIEKDLGPEGMKKSVVVCATSDKPALIRIKGALTATAIAEYFRDKGKKVILMMDSVTR  262
             EF++   +++   K V+V ATSD P++ R ++A  AT++AEYFRD+GK+V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  263  FAMAQREVGLAIGEPPATKGYTPSVFAKLPKLMERSGTSADGSITAFYTVLVDGDDFNEP  322
            +A A R+V+LA GE PA +GY +SVF +LP+L+ER+G++++GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  323  IADAVRGILDGHIVLSRDLAHKNHYPAIDILNSVSRLMSQIAPDEHKKSASIARDLLATY  382
            +AD +R+ILDGH+ LSR LA + HYPAID+L+SVSR+ +Q++   H   AS  R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  383  KDSEDLINIGAYVKGSNRKIDMAINYNEMLNDFLCQGIEEKSSFEETQNGL  433
             + + +I++G Y  G N   D A++  + L+  LCQ + + SSF++T +G+
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

218) fliI in NC_013791


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  268 bits (1002),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 169/408 (42%), Positives = 281/408 (69%), Gaps = 7/408 (1%)

Query  24   RVVGLMIESIGPVASVGELCYILVG-KQNQTRVRAEVVGFRDEYVLLMPLNGIQEIAPGS  82
            ++ G +IE+     ++GELC I  G  Q+Q   RA+VVG++ E  +L  +   Q ++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  83   LVEATGSPLEIKVGSGLIGKVVDGCGELLDQQKLPKGLTSFPTDN----EPPNPLKRPRI  138
            ++ +TG +L   VG +++G V+D  G +++  ++   +++++ +      PP+   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  139  EHAMSLGVRAIDSLFTVGKGQRIGIFAGSGVGKSTLLAMLAKNSSADLNVIALIGERGRE  198
             +++  GVRAID+L+T G GQR+GIFA++G GK+ L+ ML  ++ AD+ VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  199  VKDFIERDLGAEGLSRTILVVATSDQPALMRIKGAMTATAIAEYFRNQGLDVNLMMDSVT  258
            V +F++   +++   + +LV ATSD P++ R ++A  AT++AEYFR+QG  V L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  259  RFAMAQREVGLATGEPPTTKGYTPSVFAMLPKLLERSGTDAKGSITAFYTVLVDGDDMNE  318
            R+A A R+V+LA+GE P+ +GY +SVF  LP+LLER+G+ + GSITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  319  PIADAVRGILDGHLVLDRKLANKGQFPAINVLKSVSRVMSDLVNPIHKQAAERVRKLIAT  378
            P+AD +R+ILDGHL L RKLA +G++PAI+VLKSVSRV +++  P H + A  VRKL++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  379  YEEAEDLINIGAYKRGSSKEIDEAIQAYPAIIEFLTQATDERMSFEES  426
             EE + +I++G Y+ G + + D A+Q   ++   L Q+  +  SF+++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

219) Desde_3522 in NC_018017


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  268 bits (1002),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 171/411 (42%), Positives = 286/411 (70%), Gaps = 6/411 (1%)

Query  25   KIVGLMIESDGPRVSVGEYCKIH-TRQGKEI--PAEVVGFRNSTTLLMPLAELEGIAPGD  81
            KI G +IE++   V++GE C I+  ++ K++   A+VVG++   T+L  +++ +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  82   RVVPQQHKLEVGVGQALLGRILDGLGRPLD--GRPMVTHKDYPLQNSPPSAFL-RPRIRD  138
             + P  + L   VG ++LG +LD  G+ ++     +    +  + + +P+++  R  +R+
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  139  PLSVGVRTVDGMLTIGRGQRIGIFAGSGVGKSTLLGMMARNTTADVNVIALVGERGRELR  198
            PL  GVR++DG+LT G GQR+GIFA++G GK+ L+ M+  +T ADV VI+L+GERGRE+ 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  199  DFIEKDLGEEGLERSVLVVATSDQPALVRLKAAFTATAIAEYFRDQGQDVLLMMDSVTRF  258
            +F++   + +  E+ VLV ATSD P++ R +AA  AT++AEYFRDQG+ V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  259  AMAQREVGLTTGEPPATRGYPPSVFALLPKLLERSGMSEVGSITGIYTVLVDGDDHNEPI  318
            A A R+V+L++GE PA RGYP+SVF  LP+LLER+G +  GSIT++YTVL++++++ +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  319  ADTVRGILDGHIVLTRELAMQNHYPAIDTLQSVSRVMNDIISPEHKELAGKLREHLAIYH  378
            AD +R+ILDGH+ L+R LA Q HYPAID L+SVSRV  ++ +P H E A+ +R  ++  +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  379  DAKDLIDIGAYVAGSNPRIDAAIQHIEGINGFLRQDVEEKVSFDEMIQQLH  429
            + + +ID+G Y +G N   D A+Q  +++++ L Q V +  SFD+ +  ++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

220) RHE_PD00057 in NC_004041


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  268 bits (1002),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 177/423 (42%), Positives = 294/423 (70%), Gaps = 21/423 (4%)

Query  26   SVSGLLVRALIPSVRIGELCELHEPGRGR-----IGLADVVGIDGETALLSLHGETRGIS  80
             ++G ++ A +  V IGELCE++   RG+     ++ A+VVG++ E ++LSL G+++G+S
Sbjct  15   KITGPIIEAELRDVAIGELCEIR---RGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS  71

Query  81   QRTEIVPTGREPAISVGNFLLGAVVDAHGNV---LRPSANPAGDDARFLQ---PLYGQPV  134
            +   + PTGR  +  VG  +LGAV+D+ G++   + P   P +++ R ++   P Y+  V
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRV  130

Query  135  NPLSRRPIRQPFTSGIAALDGLLTCGQGQRIGIFGAPGAGKSTLVSQIVANNKADVIVCA  194
                   +R+P+ +G+ A+DGLLTCG GQR+GIF+++G GK+ L+  ++ +  ADV+V +
Sbjct  131  G------VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIG  184

Query  195  LVGERGREVGEFVADNMPEGVASNVALVLATSDRPALERFKAVMTATAIAEYFREQGKHV  254
            L+GERGREV EFV    +     +  LV+ATSD P+++R +A   AT++AEYFR+QGK+V
Sbjct  185  LIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRV  244

Query  255  LLVIDSVTRMARALREVGLAAGEPPVRRGFPPSVFAVLPQIFERAGNSANGTMTAFYTVL  314
            +L IDS+TR ARALR+V+LA+GE P RRG+P+SVF  LP+++ER+G +++G++TAFYTVL
Sbjct  245  VLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVL  304

Query  315  VEGEEQDDPIAEETRSLLDGHIVLSDKIARAGNFPAIDVLASRSRTMSAVVSESHRQaad  374
            +E+EE+ DP+A+E RS+LDGH+ LS K+A  G++PAIDVL S SR  + V + +H + A 
Sbjct  305  LESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQAS  364

Query  375  rlrallalYDEVELLIRVGEYRQGRDAAVDEAVAKHGLIQRFLFDGQGKPQPFGAIVEAL  434
             +R L++  +E++L+I +GEYR G +   D A+  ++ ++  L +  ++  +F+  + ++
Sbjct  365  AVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

Query  435  EEL  437
            + +
Sbjct  425  NAF  427

221) Dvul_2988 in NC_008741


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  268 bits (1001),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 179/406 (45%), Positives = 282/406 (70%), Gaps = 4/406 (0%)

Query  32   TIIRAVVPGVKVGELCLLRNPWDDWNL--RAEVVGFVKHVALLTPLGNLQGISPATEVIP  89
             II A + +V +GELC +R  W++ ++  RA+VVG+ ++ ++L+ +GN QG+S    + P
Sbjct  19   PIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYP  78

Query  90   TGEILSIPVg-edllgrvldglgdpidggpplKPRTRYPVYADPPNPMTRRI-IDRPISL  147
            TG  LS  VG   L + +           P + P +   V   +P + + R+ +  P+  
Sbjct  79   TGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  148  GLRVLDGVLTCGEGQRMGIFAAAGGGKSTLLSSIIKGCSADVCVLALIGERGREVREFIE  207
            G+R +DG+LTCG GQRMGIFA+AG GK+ L+  +I    ADV V++LIGERGREV EF++
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  208  HDLGPEGRKKAVLVVSTSDRSSMERLKAAYTATAIAEYFRDQRRSVLLMMDSVTRFGRAQ  267
               +++ + K VLV +TSD +S++R +AA  AT++AEYFRDQ + V+L +DS+TR++RA 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  268  REIGLAAGEPPTRRGFPPSVFSTLPRLMERAGNSDRGSITALYTVLVEGDDMTEPIADET  327
            R+++LA+GE P+RRG+P+SVF  LPRL+ER+G +  GSITA+YTVL+E+++ ++P+ADE 
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEI  318

Query  328  RSILDGHIVLSRKLAAANHYPAIDVQASVSRVMNAIVGKEHKGAAQKLRKILAKYAEVEL  387
            RSILDGH+ LSRKLA+  HYPAIDV  SVSRV   +    H   A  +RK++++  E++L
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  388  LVQIGEYKKGSDKEADDALARVGAVNAFLRQGLDERSTFDETLAAL  433
            ++++GEY+ G + + D A+   ++++A L Q + + S+FD+TL+++
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

222) DVUA0119 in NC_005863


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  268 bits (1001),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 179/406 (45%), Positives = 282/406 (70%), Gaps = 4/406 (0%)

Query  32   TIIRAVVPGVKVGELCLLRNPWDDWNL--RAEVVGFVKHVALLTPLGNLQGISPATEVIP  89
             II A + +V +GELC +R  W++ ++  RA+VVG+ ++ ++L+ +GN QG+S    + P
Sbjct  19   PIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYP  78

Query  90   TGEILSIPVg-edllgrvldglgdpidggpplKPRTRYPVYADPPNPMTRRI-IDRPISL  147
            TG  LS  VG   L + +           P + P +   V   +P + + R+ +  P+  
Sbjct  79   TGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  148  GLRVLDGVLTCGEGQRMGIFAAAGGGKSTLLSSIIKGCSADVCVLALIGERGREVREFIE  207
            G+R +DG+LTCG GQRMGIFA+AG GK+ L+  +I    ADV V++LIGERGREV EF++
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  208  HDLGPEGRKKAVLVVSTSDRSSMERLKAAYTATAIAEYFRDQRRSVLLMMDSVTRFGRAQ  267
               +++ + K VLV +TSD +S++R +AA  AT++AEYFRDQ + V+L +DS+TR++RA 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  268  REIGLAAGEPPTRRGFPPSVFSTLPRLMERAGNSDRGSITALYTVLVEGDDMTEPIADET  327
            R+++LA+GE P+RRG+P+SVF  LPRL+ER+G +  GSITA+YTVL+E+++ ++P+ADE 
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEI  318

Query  328  RSILDGHIVLSRKLAAANHYPAIDVQASVSRVMNAIVGKEHKGAAQKLRKILAKYAEVEL  387
            RSILDGH+ LSRKLA+  HYPAIDV  SVSRV   +    H   A  +RK++++  E++L
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  388  LVQIGEYKKGSDKEADDALARVGAVNAFLRQGLDERSTFDETLAAL  433
            ++++GEY+ G + + D A+   ++++A L Q + + S+FD+TL+++
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

223) Deval_3220 in NC_017311


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  268 bits (1001),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 179/406 (45%), Positives = 282/406 (70%), Gaps = 4/406 (0%)

Query  32   TIIRAVVPGVKVGELCLLRNPWDDWNL--RAEVVGFVKHVALLTPLGNLQGISPATEVIP  89
             II A + +V +GELC +R  W++ ++  RA+VVG+ ++ ++L+ +GN QG+S    + P
Sbjct  19   PIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYP  78

Query  90   TGEILSIPVg-edllgrvldglgdpidggpplKPRTRYPVYADPPNPMTRRI-IDRPISL  147
            TG  LS  VG   L + +           P + P +   V   +P + + R+ +  P+  
Sbjct  79   TGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  148  GLRVLDGVLTCGEGQRMGIFAAAGGGKSTLLSSIIKGCSADVCVLALIGERGREVREFIE  207
            G+R +DG+LTCG GQRMGIFA+AG GK+ L+  +I    ADV V++LIGERGREV EF++
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  208  HDLGPEGRKKAVLVVSTSDRSSMERLKAAYTATAIAEYFRDQRRSVLLMMDSVTRFGRAQ  267
               +++ + K VLV +TSD +S++R +AA  AT++AEYFRDQ + V+L +DS+TR++RA 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  268  REIGLAAGEPPTRRGFPPSVFSTLPRLMERAGNSDRGSITALYTVLVEGDDMTEPIADET  327
            R+++LA+GE P+RRG+P+SVF  LPRL+ER+G +  GSITA+YTVL+E+++ ++P+ADE 
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEI  318

Query  328  RSILDGHIVLSRKLAAANHYPAIDVQASVSRVMNAIVGKEHKGAAQKLRKILAKYAEVEL  387
            RSILDGH+ LSRKLA+  HYPAIDV  SVSRV   +    H   A  +RK++++  E++L
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  388  LVQIGEYKKGSDKEADDALARVGAVNAFLRQGLDERSTFDETLAAL  433
            ++++GEY+ G + + D A+   ++++A L Q + + S+FD+TL+++
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

224) BURPS1106A_A1898 in NC_009078


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  268 bits (1002),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 182/431 (43%), Positives = 304/431 (71%), Gaps = 11/431 (2%)

Query  30   VRTGRVLEVIGTLIKVSGL-------DVALGELCELRT--REGRLLQRAEVVGFTRDVAL  80
            ++T R+L+ ++   K++G        DVA+GELCE+R   ++ +++ RA+VVG+ R+ ++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  81   LSPFSQLEQISRTTQVIGLGRPLSIPVGDALLGRVIdglgapldggpplaSE-TLQPLIA  139
            LS +++ + +SR   +   GR+LS  VG ++LG V+D  G  ++   P  +  + + +I 
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  140  APPEPMSRRM-IDAAMPTGVRVVDAMMALGEGQRMGIFAPAGVGKSTLLGMFARGAACDV  198
             +P + + R+ +  ++ TGVR +D++++ G GQRMGIFA+AG GK+ L+ M+   +  DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  199  NVIALIGERGREVREFIELILGQAGMARSVVVCATSDRSSMERakaayaataiaEYFRDR  258
             VI+LIGERGREV EF++++ +     + V+V ATSD +S++R +AA  AT++AEYFRD+
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  259  GRRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGRTGSITAL  318
            G+RV+L +DS+TR+ARA R+++LA+GE PARRG+P+SVF +LPRLLER+G    GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  319  YTVLAEDESGSDPVAEEVRGILDGHMILSREVAAKNQYPAIDVLGSLSRVMPLVVDDGHM  378
            YTVL E E  +DP+A+E+R+ILDGH+ LSR +A++ +YPAIDVL S+SRV   V    H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  379  RAAARVRELLAKHREVEVLLQIGEYKAGANPLADEAIAKADAIRSFFSQRTDDYAAAEDT  438
              A+ VR L+++  E+++++++GEY++G N   D A+   D++++ + Q   +Y++ +DT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  439  IARLYALSGAN  449
            ++ + A+++ N
Sbjct  421  LSGMNAFADQN  431

225) BPC006_II1879 in NC_018529


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  268 bits (1002),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 182/431 (43%), Positives = 304/431 (71%), Gaps = 11/431 (2%)

Query  30   VRTGRVLEVIGTLIKVSGL-------DVALGELCELRT--REGRLLQRAEVVGFTRDVAL  80
            ++T R+L+ ++   K++G        DVA+GELCE+R   ++ +++ RA+VVG+ R+ ++
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  81   LSPFSQLEQISRTTQVIGLGRPLSIPVGDALLGRVIdglgapldggpplaSE-TLQPLIA  139
            LS +++ + +SR   +   GR+LS  VG ++LG V+D  G  ++   P  +  + + +I 
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  140  APPEPMSRRM-IDAAMPTGVRVVDAMMALGEGQRMGIFAPAGVGKSTLLGMFARGAACDV  198
             +P + + R+ +  ++ TGVR +D++++ G GQRMGIFA+AG GK+ L+ M+   +  DV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  199  NVIALIGERGREVREFIELILGQAGMARSVVVCATSDRSSMERakaayaataiaEYFRDR  258
             VI+LIGERGREV EF++++ +     + V+V ATSD +S++R +AA  AT++AEYFRD+
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  259  GRRVLLMMDSLTRFARAGREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGRTGSITAL  318
            G+RV+L +DS+TR+ARA R+++LA+GE PARRG+P+SVF +LPRLLER+G    GSITA+
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  319  YTVLAEDESGSDPVAEEVRGILDGHMILSREVAAKNQYPAIDVLGSLSRVMPLVVDDGHM  378
            YTVL E E  +DP+A+E+R+ILDGH+ LSR +A++ +YPAIDVL S+SRV   V    H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  379  RAAARVRELLAKHREVEVLLQIGEYKAGANPLADEAIAKADAIRSFFSQRTDDYAAAEDT  438
              A+ VR L+++  E+++++++GEY++G N   D A+   D++++ + Q   +Y++ +DT
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  439  IARLYALSGAN  449
            ++ + A+++ N
Sbjct  421  LSGMNAFADQN  431

226) fliI in NC_017542


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  267 bits (1000),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 171/385 (45%), Positives = 272/385 (71%), Gaps = 6/385 (1%)

Query  27   QVIGLMVESEGPDASIGDVCYIYPGKAAKPL--QAEVVGFRDNKVLLMPLGELQSIGPGC  84
            ++ G ++E+E  D +IG++C I  G   K +  +A+VVG++ ++ +L  +G+ Q+++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  85   DVVGTGKPLNVQVGSELLGKVLDGLG---QPLDGSLIPSRMARYSTFNIPSNPLNRPRVQ  141
             +  TG++L+  VG  +LG VLD  G   + +   + P    R      PS + +R  V+
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVR  133

Query  142  EPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTEADVNVIALIGERGREV  201
            EP+  GVRAIDGLLT G GQR+GIFA++G GK+ LM M+  +TEADV VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  LDFIERDLGPEGLERSVVIVATSDQPALIRIKGALIATTIAEYFRDRGLNVMLMMDSVTR  261
             +F++   +++  E+ V++ ATSD P++ R ++A +ATT+AEYFRD+G  V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  YAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTVLVDGDDMNEP  321
            YA A R+V+LA GE PA RGY +SVF +LP+LLER+G+ + GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLNRGIANKGHFPAIDVLASISRVMKDIATRDQIDAAENIKRLMAIY  381
            +AD +R+ILDGH+ L+R +A +GH+PAIDVL S+SRV  +++T  + + A  +++LM+  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KDSEDLINIGAYQQGSNAEIDESME  406
             + + +I++G Y+ G N + D +M+
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

227) PPSC2_c2091 in NC_014622


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  267 bits (1000),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 171/385 (45%), Positives = 272/385 (71%), Gaps = 6/385 (1%)

Query  27   QVIGLMVESEGPDASIGDVCYIYPGKAAKPL--QAEVVGFRDNKVLLMPLGELQSIGPGC  84
            ++ G ++E+E  D +IG++C I  G   K +  +A+VVG++ ++ +L  +G+ Q+++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  85   DVVGTGKPLNVQVGSELLGKVLDGLG---QPLDGSLIPSRMARYSTFNIPSNPLNRPRVQ  141
             +  TG++L+  VG  +LG VLD  G   + +   + P    R      PS + +R  V+
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVR  133

Query  142  EPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTEADVNVIALIGERGREV  201
            EP+  GVRAIDGLLT G GQR+GIFA++G GK+ LM M+  +TEADV VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  LDFIERDLGPEGLERSVVIVATSDQPALIRIKGALIATTIAEYFRDRGLNVMLMMDSVTR  261
             +F++   +++  E+ V++ ATSD P++ R ++A +ATT+AEYFRD+G  V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  YAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTVLVDGDDMNEP  321
            YA A R+V+LA GE PA RGY +SVF +LP+LLER+G+ + GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLNRGIANKGHFPAIDVLASISRVMKDIATRDQIDAAENIKRLMAIY  381
            +AD +R+ILDGH+ L+R +A +GH+PAIDVL S+SRV  +++T  + + A  +++LM+  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KDSEDLINIGAYQQGSNAEIDESME  406
             + + +I++G Y+ G N + D +M+
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

228) hrcN in NC_011983


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  267 bits (1000),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 177/415 (43%), Positives = 289/415 (70%), Gaps = 3/415 (0%)

Query  26   SVSGLLVRANVPAVRIGELCELRE--PGTDEVGFADVVGIEGETALLSLHGTTRGISVRT  83
             ++G ++ A++  V IGELCE+R      + V+ A+VVG++ E ++LSL G ++G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  84   EVIPTGREPVIAVGDFLLGAVIDAHGNIIRKAEGVTGRAGETSQplyasppaplarrpva  143
             + PTGR     VG  +LGAV+D+ G+I+ +     +  +E  + +  +PP+  +R  V 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDVAPPSYASRVGVR  133

Query  144  rhlpVGIPAIDGLLTCGEGQRVGIFGPPGAGKSTLVSDIVKNVDADVVVCALVGERGREI  203
              L  G+ AIDGLLTCG GQR+GIF+++G GK+ L+  ++ + +ADV V +L+GERGRE+
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  204  GEFVELVMPAGARSNAVLVTATSERPALERFKAVLTATAIAEHFRDRGKRVVLVVDSVTR  263
             EFV+++ ++  + + VLV ATS+ P+++R +A   AT++AE FRD+GKRVVL +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  264  LARALREIGLAAGEPPVRRGFPPSVFALLPQIFERAGNSAEGTMTAFYTVLVEGEERTDP  323
             ARALR+++LA+GE P RRG+P+SVF  LP+++ER+G ++EG++TAFYTVL+E+EE +DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  324  IAEETRALLDGHIVLSDRIAQAGQFPAIDILASRSRTMNAVVTETHRRASDRLRSMLALY  383
            +A+E R++LDGH+ LS ++A  G++PAID+L S SR    V T TH   +  +R +++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  384  KEVELLIRVGEYQDGRDAAIDEAVRKRTLIGNFLFSGHAKAPSFEETVARLQELA  438
             E++L+I +GEY+ G +   D A++ R  +   L    A+ +SF++T++ ++ +A
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFA  428

229) fliI in NC_017668


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  267 bits (1000),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 167/408 (41%), Positives = 287/408 (71%), Gaps = 5/408 (1%)

Query  23   HRVVGLMVESKGPEASIGDLCYIHSHSDRNQSIA-AEVVGFNQENILLMPYKEMRDISPG  81
            +++ G ++E+   + +IG+LC I+   +++Q +A A+VVG+++E  +L    + +++S +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  82   SLVEATGEPMKVKAGPGLIGKILDATGQPLDGRALPKGLTMYP---TDQSPPNPLSRPTI  138
             ++ +TG ++    G +++G +LD+TG+ ++ R  P    +      D +PP+  SR  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  139  KEPIQVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMISRNSSADLNVIALIGERGRE  198
            +EP+  GVRAID+LLT G GQR+GIFA++G GK+ LM M+  ++ AD+ VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  199  VREFIENDLGEDGLKRSIVIVATSDQPALMRTKGAYTATAISEYFRDLGYNVNLMMDSVT  258
            V EF++   + +   + +++ ATSD P++ R ++A  AT+++EYFRD G  V L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  259  RFAMAQREIGLATGEPPTTKGYTPSVFALLPKLLERTGTSSKGTITAFYTVLVDGDDMNE  318
            R+A A R+++LA+GE P+ +GY +SVF  LP+LLER G++S G+ITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  319  PVSDTVRGILDGHFVLDRNLAEQGQFPAINILRSISRVMKQITSDEHKQSAERLRALLAR  378
            P++D +R+ILDGH+ L R+LA QG++PAI++L+S+SRV  Q+T+  H + A  +R L++R
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  379  YEENSELIQIGAYKKGSSKDIDQAIHYHPSIINFLKQGVQEPSSFEGS  426
             EE   +I++G Y+ G + D D+A++ + S+   L Q V + SSF+++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

230) fliI in NC_015391


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  267 bits (1000),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 177/413 (43%), Positives = 287/413 (70%), Gaps = 5/413 (1%)

Query  27   QVTGLIIKVEGLDAFVGEVCEIHIKSSGR--IALSEVVGFVDEMVLLMPLDELEGIGPGC  84
            ++TG II  E  D  +GE+CEI+     +  +A ++VVG+  E  +L  +++ +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  85   LVKPTGKTLKVEISEKLLGNTLDGLGRPMDT-SLEVDGVFYD-VNRSSPNPF-KRKKIKD  141
            ++ PTG++L   ++  +LG  LD  G+ ++  + EV  +  + V   +P ++  R  +++
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  142  VMPTGIKAIDGTLTVGEGQRVGIFAGSGVGKSTLLGMMARYIEADVIVIGLIGERGREVL  201
             + TG++AIDG LT G GQR+GIFA++G GK+ L+ M+    EADV+VIGLIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  202  EFIEKDLGEEGYRKSVVVCATSDMPPLVRLKGASVATTIAEYFRDQGKKVVLMMDSVTRV  261
            EF++   + +   K V+V ATSD P++ R ++A +ATT+AEYFRDQGK+VVL +DS+TR 
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  262  AMAQREIGLATGEPPTTKGYTPSVFTTLPKLLERSGMSENGSITAFYTVLVEGDDMNEPI  321
            A A R+++LA+GE P+ +GY +SVF  LP+LLER+G + +GSITAFYTVL+E+++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  322  ADSVRGILDGHIVLSRKIASENHYPAIDIQNSISRLMKDITTDKHSTTAGKLKENMSVYS  381
            AD +R+ILDGH+ LSRK+A++ HYPAID+ +S+SR+  ++TT  H+  A+ ++  M+   
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  382  DSKDLIDVGAYRKGSNPSVDRAVQLNTPIKDFLKQRVDERYAFDEVVDQLKAL  434
            + + +ID+G YR G N   DRA+Q+  ++K  L Q V +  +FD+ +  ++A+
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

231) fliI in NC_014614


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  267 bits (1000),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 172/421 (41%), Positives = 279/421 (67%), Gaps = 4/421 (0%)

Query  12   LNEISLYQYKGKVSRVIGLTIESRGPAVRLGETCHIYPIKSKEPVLA--EVVGFKEDTVL  69
            ++   L QY +   ++ G  IE+    V +GE C+I     +  V+A  +VVG++ +  +
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  70   LMPLGEMEGIGPGSMVVATGNTLEVDVGEQLLGRILDGMGNPIDDFEP--PSLNYSYPVN  127
            L  +G+ +G++ + ++ +TG +L   VG  +LG +LD  G+ ++ F P  ++++    ++
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  128  NQPPNPLSRTKISEPLPLGVKAIDGFLTCGRGQRIGIFAGSGVGKSTLLGMIARNTLADI  187
              PP+  SR  + EPL  GV+AIDG+LTCG GQR+GIFA++G GK+ L+ M+  +T AD+
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  188  NVIALIGERGREVKEFIDNDLEEEGLKKSVVIVVTSDQPPLVRMKGALLATSIAEYFRDC  247
             VI+LIGERGREV EF+D     +   K V++  TSD P++ R ++A LAT++AEYFRD 
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  248  GKNVVLMMDSLTRFSMAQREVGLAIGEPPVTKGYTPSVFAVLPKLLERAGNSSKGSITGL  307
            GK VVL +DS+TR++ A R+V+LA GE P  +GY +SVF  LP+LLER+G +S GSIT++
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  308  YTVLVDGDDMNEPIADAVRGILDGHIVLSRNLANKNHYPAIDILASVSRVMPNIVDKEHI  367
            YTVL+++++  +P+AD +R+ILDGH+ LSR+LA + HYPAID+L SVSRV  ++    H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  368  DIVGRIKDLMATYRDSEDLINIGAYIKGTNKKVDMAIEKIEIINEFLRQGIHDRLTFDEI  427
            +  + ++ LM+   + + +I++G Y  G N   D A++  + ++  L Q + +  +FD+ 
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  428  V  428
            +
Sbjct  421  L  421

232) Geoth_2698 in NC_015660


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  267 bits (998),  Expect = 9e-73, Method: Compositional matrix adjust.
 Identities = 167/387 (44%), Positives = 276/387 (72%), Gaps = 8/387 (2%)

Query  12   RVIGLMIEAKGPESSVGDICYIHTGSGKQKQMIA-AEVVGFKEQHVLLMPFSTVQHISPG  70
            ++ G +IEA   + ++G++C I+ G   QKQ++A A+VVG++ ++ +L  ++  Q +S +
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGW-HQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  71   CIVEATGKPLQIRVGFPLIGKVLDSLGYPLDGSPLSKGLQPISIER----NPPNPLARPP  126
             ++ +TG++L  +VG++++G VLD+ G  ++   ++  + PIS ER     PP+  +R  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEERVIDVAPPSYASRVG  131

Query  127  ISEPIEVGVRVIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARHTNADINVIALIGERGR  186
            + EP+  GVR ID+LLT G GQR+GIFA++G GK+ LM M+  +T+AD+ VI+LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  187  EVREFIERDLGPEGLARSIVVVATSDQPALMRVKGAYTATAIAEYFRDQGMDVMFMMDSV  246
            EV EF++   +++   + ++V ATSD P++ R ++A  AT++AEYFRDQG  V++ +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  247  TRVAMAQREIGLAIGEPPTTKGYTPSVFAILPKLLERTGTNACGTITAFYTVLVDGDDMN  306
            TR A A R+++LA GE P+ +GY +SVF  LP+LLER G+ + G+ITAFYTVL+++++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  307  EPIADTVRGILDGHLVLERSLANKGQYPAINVLKSVSRVMNHIISPEHRQAADKLRQLLS  366
            +P+AD +R+ILDGHL L R LA +G+YPAI+VLKSVSRV  ++ +P H + A  +R+L++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  367  TYINSEDLINIGAYKRGSSKEIDEAIR  393
               + + +I++G Y+ G + + D A++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQ  398

233) Pjdr2_3454 in NC_012914


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  266 bits (996),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 172/390 (45%), Positives = 274/390 (71%), Gaps = 6/390 (1%)

Query  29   QVIGLTVESEGPDASIGDVCLIYPAKGAKPI--KAEVVGFRDNKVILMPLGELHAISPGC  86
            ++ G  +E+E  D +IG++C I  +   K +  +A+VVG++ ++ +L  +G+ +++S + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  87   DVVGTGKPLSVQVGSELLGKVLDGLGKPLDGSFLP---SRMQQYSTHNEPSNPLARPRVQ  143
             +  TG++LS  VG  +LG VLD  GK ++  F P   +  ++   +  P++  +R  V+
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  144  ETLSIGVRAIDGLLTVGRGQRVGIFAGSGVGKSTLLGMIARNTSADVNVIALIGERGREV  203
            E L  GVRAIDGLLT G GQR+GIFA++G GK+ L+ M+  +T ADV VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  204  LEFIEKDLGPEGLARSVVIVATSDQPALIRIKGALIATSIAEYFRDRGLNVMLMMDSVTR  263
             EF++   +++   + V++ ATSD P++ R ++A +AT++AEYFRD+G  V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  264  YAMAQREVGLAIGEPPATRGYTPSVFATLPKLLERAGTGPNGSITAFYTVLVDGDDMNEP  323
            YA A R+V+LA GE PA RGY +SVF  LP+LLER+G+ ++GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  324  IADAVRGILDGHIVLNRQLANKGHFPAIDVLASVSRVMKEIVTEEHQEAANELKMLLSVY  383
            +AD +R+ILDGH+ L+R+LA +GH+PAIDVL SVSRV  ++ T  H E A+ ++ L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  384  RDSEDLINIGAYQRGTNEKIDTAIENIDAI  413
             + + +I++G Y+ G N   D A++  D++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSL  403

234) PPE_01886 in NC_014483


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  266 bits (996),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 170/385 (45%), Positives = 271/385 (71%), Gaps = 6/385 (1%)

Query  27   QVIGLMVESEGPDASIGDVCYIYPGKTAKPL--QAEVVGFRDNKVLLMPLGELQSIGPGC  84
            ++ G ++E+E  D +IG++C I  G   K +  +A+VVG++ ++ +L  +G+ Q+++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  85   DVVGTGKPLNVQVGSELLGKVLDGLG---QPLDGSLIPSRMARYSTFNIPSNPLNRPRVQ  141
             +  TG++L+  VG  +LG VLD  G   + +   + P    R      PS + +R  V+
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVR  133

Query  142  EPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTEADVNVIALIGERGREV  201
            EP+  GVRAIDGLLT G GQR+GIFA++G GK+ LM M+  +TEADV VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  LDFIERDLGPEGLERSVVIVATSDQPALIRIKGALIATTIAEYFRDRGLNVMLMMDSVTR  261
             +F++   +++  E+ V++ ATSD P++ R ++A +ATT+AEYFRD+G  V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  YAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTVLVDGDDMNEP  321
            YA A R+V+LA GE PA RGY +SVF +LP+LLER+G+ + GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLNRGIANKGHFPAIDVLASISRVMKDIAPRDQIDAAENIKRLMAVY  381
            +AD +R+ILDGH+ L+R +A +GH+PAIDVL S+SRV  +++   + + A  +++LM+  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KDSEDLINIGAYQQGSNAEIDESME  406
             + + +I++G Y+ G N + D +M+
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

235) HPL003_18150 in NC_016641


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  266 bits (996),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 171/385 (45%), Positives = 271/385 (71%), Gaps = 6/385 (1%)

Query  27   QVIGLMVESEGPDASIGDVCYIYPGKTAKPL--QAEVVGFRDNKVLLMPLGELQSIGPGC  84
            ++ G ++E+E  D +IG++C I  G   K +  +A+VVG++ ++ +L  +G+ Q+++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  85   DVVGTGKPLNVQVGSELLGKVLDGLG---QPLDGSLIPSRMARYSTFNIPSNPLSRPRVQ  141
             +  TG++L+  VG  +LG VLD  G   + +   + P    R      PS + SR  V+
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVR  133

Query  142  EPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTEADVNVIALIGERGREV  201
            EP+  GVRAIDGLLT G GQR+GIFA++G GK+ LM M+  +TEADV VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  LDFIERDLGPEGLERSVVIVATSDQPALIRIKGALIATTIAEYFRDRGLNVMLMMDSVTR  261
             +F++   +++  E+ V++ ATSD P++ R ++A +ATT+AEYFRD+G  V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  YAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTVLVDGDDMNEP  321
            YA A R+V+LA GE PA RGY +SVF +LP+LLER+G+ + GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLNRGIANKGHFPAIDVLASISRVMKDIAPRDQIDAAENIKRLMAVY  381
            +AD +R+ILDGH+ L+R +A +GH+PAIDVL S+SRV  +++   + + A  +++LM+  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KDSEDLINIGAYQQGSNAEIDESMD  406
             + + +I++G Y+ G N + D +M+
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

236) sctN in NC_005861


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  266 bits (994),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 177/412 (43%), Positives = 276/412 (67%), Gaps = 4/412 (0%)

Query  45   IVGMLIKAVVPQVKIGEVCLIKRAGDP----LRAEVVGFTKDEVLLSPLGEMTGIGPSSE  100
            I G +I A + +V IGE+C I+R+ +      RA+VVG+ ++  +LS +G+  G++    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  101  VIPTHLPLHIKVGPQLLGRILNGLGEPLDEETKGPLILEETYPVIQAPPDPVKRMPIHNP  160
            + PT  +L   VG  +LG +L+  G  ++  T     + E   +  APP    R+ +++P
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  161  ISVGIRAIDGVLTTGLGQRVGIFAAAGGGKSTLLGMIARNAVADVNVISLIGERGRELRE  220
            +  G+RAIDG+LT G+GQR+GIFA+AG GK+ L+ M+  ++ ADV VI+LIGERGRE+ E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  221  FIEKDLGPEGLKRSVLVVSTSDQASQLRLNAAYVGTAIAEYFRDQGKSVILMMDSVTRFA  280
            F++   +++   + VLV +TSD +S  R NAA ++T++AEYFRDQGK V+L +DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  281  RALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGNSDKGSITAFYTILVAGDDMNEPVA  340
            RALR+V+LA+GE PAR GY +SVF  LP+LLER+G +  GSITAFYT+L+ +++  +P+A
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  341  DEVRSILDGHIILSSELARQYHYPAIDVLSSASRVMNAIVPKEHLQLVGKLKEVLANYKK  400
            DE+RSILDGH+ LS  LA Q HYPAIDVL S SRV   +    H +  + ++ +++    
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  401  NELLIKIGEYKRGADKAGDFAIDYIEKVLKFLKQGVDEKCSFQETVQLLKSL  452
             +L+I +GEY+ G +   D A++  + +   L Q V +  SF++T+  ++++
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

237) hrcN in NC_010996


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  266 bits (995),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 177/423 (42%), Positives = 292/423 (70%), Gaps = 21/423 (4%)

Query  26   SVSGLLVRALIPSVRIGELCELHEPGRGR-----IGLADVVGIDGETALLSLHGETRGIS  80
             ++G ++ A +  V IGELCE++   RG+     ++ A+VVG++ E ++LSL G+++G+S
Sbjct  15   KITGPIIEAELRDVAIGELCEIR---RGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS  71

Query  81   QRTEIVPTGREPAISVGNFLLGAIVDAHGNV---LRPSANPAGEDARFLQ---PLYGQPV  134
            +   + PTGR  +  VG  +LGA++D+ G++   + P   P +E+ R ++   P Y+  V
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRV  130

Query  135  NPLSRRPIRQPFTSGIAALDGLLTCGQGQRIGIFGAPGAGKSTLVSQIVANNKADVIVCA  194
                   +R+P+ +G+ A+DGLLTCG GQR+GIF+++G GK+ L+  ++ +  ADV+V +
Sbjct  131  G------VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIG  184

Query  195  LVGERGREVGEFVAGNMPEGVPSNVTLVVATSDRPALERFKAVMTATAIAEYFREQGKHV  254
            L+GERGREV EFV    +     +  LV ATSD P+++R +A   AT++AEYFR+QGK+V
Sbjct  185  LIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRV  244

Query  255  LLVIDSVTRMARALREVGLAAGEPPVRRGFPPSVFAVLPQIFERAGNSANGMMTAFYTVL  314
            +L IDS+TR ARALR+V+LA+GE P RRG+P+SVF  LP+++ER+G +++G +TAFYTVL
Sbjct  245  VLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVL  304

Query  315  VEGEEQDDPIAEETRSLLDGHIVLSDKIAKAGNFPAIDVLASRSRTMSAVVSESHRQaad  374
            +E+EE+ DP+A+E RS+LDGH+ LS K+A  G++PAIDVL S SR  + V + +H + A 
Sbjct  305  LESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQAS  364

Query  375  rlrallalYDEVELLIRVGEYRQGRDAAVDEAVAKHGLIQRFLFDGQGKPQPFGAIVEAL  434
             +R L++  +E++L+I +GEYR G +   D A+  ++ ++  L +  ++  +F+  + ++
Sbjct  365  AVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

Query  435  EEL  437
            + +
Sbjct  425  NAF  427

238) GY4MC1_2685 in NC_014650


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  265 bits (992),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 166/387 (43%), Positives = 276/387 (72%), Gaps = 8/387 (2%)

Query  12   RVIGLMIEAKGPESSVGDICYIHTGSGKQKQMIA-AEVVGFKEQHVLLMPFSTVQHISPG  70
            ++ G +IEA   + ++G++C I+ G   QKQ++A A+VVG++ ++ +L  ++  Q +S +
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGW-HQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  71   CIVEATGKPLQIRVGFPLIGKVLDSLGYPLDGSPLSKGLQPISIER----NPPNPLARPP  126
             ++ +TG++L  +VG++++G VLD+ G  ++   ++  + PIS ER     PP+  +R  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEERVIDVAPPSYASRVG  131

Query  127  ISEPIEVGVRVIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARHTNADINVIALIGERGR  186
            + EP+  GVR ID+LLT G GQR+GIFA++G GK+ LM M+  +T+AD+ VI+LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  187  EVREFIERDLGPEGLARSIVVVATSDQPALMRVKGAYTATAIAEYFRDQGMDVMFMMDSV  246
            EV EF++   +++   + ++V ATSD P++ R ++A  AT++AEYFRDQG  V++ +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  247  TRVAMAQREIGLAIGEPPTTKGYTPSVFAILPKLLERTGTNACGTITAFYTVLVDGDDMN  306
            TR A A R+++LA GE P+ +GY +SVF  LP+LLER G+ + G+ITAFYTVL+++++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  307  EPIADTVRGILDGHFVLERSLANKGQYPAINVLKSVSRVMNHIISPEHRQAADKLRQLLS  366
            +P+AD +R+ILDGH+ L R LA +G+YPAI+VLKSVSRV  ++ +P H + A  +R+L++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  367  TYINSEDLINIGAYKRGSSKEIDEAIR  393
               + + +I++G Y+ G + + D A++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQ  398

239) escN in NC_011601


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  264 bits (985),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 168/346 (49%), Positives = 254/346 (74%), Gaps = 4/346 (1%)

Query  99   GDEFKIRVGDALLGRLIDGIGRPME--SNIVAPYLPFERSLYAEPPDPLLRQVIDQPFIL  156
            G  +  +VG ++LG ++D  G+ +E  +  VAP ++ ER +   PP    R  + +P+I 
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTPEVAP-ISEERVIDVAPPSYASRVGVREPLIT  138

Query  157  GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA  216
            GVRAIDGLLTCG+GQR+GIFA++G GK+ L+ M+ + + AD++V++LIGERGREV EF+ 
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  217  LLPQS-TLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA  275
            +L  S    KCVLV +TSD P+++R +AA  ATT+AEYFRDQGK V+L +DS+TRYARA 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  276  RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEV  335
            RDV+LASGE   R G+P+SVF +LP+LLER+G+++ GSITA+YTVLLES++  DP++DE+
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEI  318

Query  336  RSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVEL  395
            RSILDGH+ L+R LA + H+PAID+  S SRV  +V T+ H   A+  +KL++   +++L
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  396  LIRIGEYTMGQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESL  441
            +I +GEY  G++ + D+A++ R  ++  + Q+  + SS++ T+ ++
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

240) Clopa_2934 in NC_021182


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  264 bits (985),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 169/406 (42%), Positives = 273/406 (68%), Gaps = 6/406 (1%)

Query  27   KVIGLTIEVEGIKAFVGEVCKI---YNEKNTAVECEVVGFREKNIILMPLGELIGIAPGC  83
            K+ G  IE E     +GE+C I    ++K+     +VVG++    +L  +G+  G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  84   RVVPTGKPLNVKCSEELFGRVLDGLGKPLDSVKIDRGSYYK---LDSDPPDPLKRRRIKD  140
             + PTG++L+   +  ++G VLD  GK ++    + ++      +D  PP    R  +++
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  141  VMSTGVRAIDGFLTCGEGQRVGIFAGSGVGKSTTLGMIAREAKADVNIIALIGERGREVL  200
             + TGVRAIDG+LTCG GQR+GIFA++G GK+  + M+  ++ ADV +I+LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  201  DFIEKDLGEEGMKKSIIVCATSDRPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTRF  260
            +F++   + +   K ++V ATSD P++ R ++A  AT++AEYFRDQGK+V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  261  AMAQREIGLAIGEPPATKGYTPSVFAMLPRLMERSGMSDKGSITAFYTVLVDGDDFNEPI  320
            A A R+++LA GE PA +GY +SVF  LPRL+ER+G +  GSITAFYTVL+++++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  321  ADAVRGILDGHIVLSRDLAAKNHYPAIDTLKSISRLMSEIADNDHKQAASAARDLLATYH  380
            AD +R+ILDGH+ LSR LA++ HYPAID LKS+SR+ ++++   H + ASA R L++  +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  381  DSEDLINLGAYVRGSNKKIDIAIHYHDHIVNYLKQGINEKSNFEDS  426
            + + +I+LG Y  G N   D A++ +D +   L Q + + S+F+D+
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

241) GYMC10_4188 in NC_013406


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  264 bits (988),  Expect = 7e-72, Method: Compositional matrix adjust.
 Identities = 165/385 (43%), Positives = 271/385 (71%), Gaps = 6/385 (1%)

Query  27   QVIGLMVESEGPDASIGDVCYIYPTKQSKPL--KAEVVGFRDNKVLLMPLGELHSIGPGC  84
            ++ G ++E+E  D +IG++C I    + K +  +A+VVG++ ++ +L  +G+ ++++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  85   DVVGTGKPLSVQVGSELLGKVLDGLGQPLDGSIIPARMPHYSTHNVPQNP---LNRPRVQ  141
             +  TG++LS  VG  +LG VLD  G+ ++  + P   P    + +   P    +R  V+
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  142  EPISIGVRAIDGLLSIGKGQRVGIFAGSGVGKSTLMGMIARNTSADVNVIALIGERGREV  201
            EP+  GVRAIDGLL+ G GQR+GIFA++G GK+ LM M+  +T ADV VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  LDFIERDLGPEGLKRSVVIVATSDQPALIRIKGALIATTIAEYFRDRGLNVMLMMDSVTR  261
             +F++   +++   + V++ ATSD P++ R ++A +ATT+AEYFRD+G  V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  YAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTVLVDGDDMNEP  321
            YA A R+V+LA GE PA RGY +SVF +LP+LLER+G+ + GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLNRNIANKGHFPAIDVLASISRVMKDISPEEQIDASENVKRLMAIY  381
            +AD +R+ILDGH+ L+R++A +GH+PAIDVL S+SRV  +++   + + +  V++LM+  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KDSEDLINIGAYQQGSNADIDESIE  406
             + + +I++G Y+ G N D D +++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

242) FliI in NC_009454


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  264 bits (988),  Expect = 7e-72, Method: Compositional matrix adjust.
 Identities = 179/431 (42%), Positives = 296/431 (69%), Gaps = 3/431 (0%)

Query  15   LKEARLLRLTGQVTRVIGLTVEVKGINASIGEVCEITVPGEPEPV--RAEVVGFRDGSTL  72
            +K +RLL+  +   ++ G  +E    + +IGE+CEI    +   V  RA+VVG++   T+
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  73   LMPLGELKGIYQGCSVTPSGRPFTIKVGEGLLGRVLNGLGEPMDGLGP-VGGRTENYPVD  131
            L  +G+ +G+ ++  + P+GR+++  VG ++LG VL+  G  ++ + P V+  +E+  +D
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  132  NRPPNPLKRRRITEVLSTGVRAVDGLLTCGRGQRIGIFSGSGVGKSTLLGMVSRFSDADV  191
              PP+   R  + E L TGVRA+DGLLTCG GQR+GIF+++G GK+ L+ M+   ++ADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  192  NVIGLIGERGREVLDFIETDLGPEGLARSVVVVATSEQPALVRLKGAFVACAVAEYFRDQ  251
             VIGLIGERGREV +F++   +++   + V+V ATS+ P++ R ++A +A +VAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  252  GRDVLLMMDSITRFAMAQREVGLAIGEPPATKGYTPSVFALLPRLLERAGMSSAGSITAF  311
            G+ V+L +DS+TR+A A R+V+LA GE PA +GY +SVF  LPRLLER+G +S GSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  312  FTVLVDGDDLNEPISDAVRGILDGHIVLSRSLAASNHFPAVDVLNSVSRLMPDITTEEHR  371
            +TVL+++++  +P++D +R+ILDGH+ LSR LA+  H+PA+DVL+SVSR+  ++TT  H 
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  372  AWAGRLRDLLAAYRQAEDLINIGAYVAGSNPRVDEAIACYQDIVAFLRQDLKEHARFEET  431
              A+ +R L++   + + +I++G Y +G N   D A+   + + A L Q + + + F++T
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  432  LAMLEKIVNRG  442
            L+ ++ + ++ 
Sbjct  421  LSGMNAFADQN  431

243) SVI_2234 in NC_014012


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  264 bits (987),  Expect = 7e-72, Method: Compositional matrix adjust.
 Identities = 168/417 (41%), Positives = 291/417 (70%), Gaps = 10/417 (2%)

Query  24   QAVRTVRYFGKVQEVGSTLVRATLPGAHQGELCLIGHKL-------KSEVIAVKGDEVLL  76
            ++ R ++Y++  Q + + ++ A L +   GELC I +         +++V++++ +  +L
Sbjct  2    KTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVL  61

Query  77   SPFDVTSWLQTGALVEPMGHGHQVLLGSELLGRVVDGLGDVMDGYPLDA---CECRPNYG  133
            S ++ +  L  + ++ P G++    +G  +LG V+D  G +++ +  +     E R    
Sbjct  62   SLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV  121

Query  134  AAPNPLSRSLIDTVMPMGIRAIDSALACGVGQRIGIFAAAGGGKSTLLGMIASHCEADVI  193
            A+P+  SR  +   +  G+RAID+ L+CGVGQR+GIFA+AG GK+ L+ M+  + EADV+
Sbjct  122  APPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVF  181

Query  194  VLALVGERGREVREFIEYNLTPEARARTVMVVATSDRPPLERMKATLTATTIAEYFRDQG  253
            V++L+GERGREV EF++   +++ + + V+V ATSD P+++R +A+  ATT+AEYFRDQG
Sbjct  182  VIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQG  241

Query  254  KNVLLMVDSLTRFARSAREISLAAGEAPVSNGYPPSVFVNLSALVERAGPAAKGSITGVY  313
            K V+L +DS+TR+AR+ R+++LA+GE P   GYP+SVF NL+ L+ER+G+++ GSIT+ Y
Sbjct  242  KRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFY  301

Query  314  TVLVEGDNMNEPIADEVRSLLDGHIVLSRKLAGAGHYPAIDINASVSRVMDQIVTQEQKK  373
            TVL+E+++  +P+ADE+RS+LDGH+ LSRKLAG GHYPAID+  SVSRV +Q+ T  +  
Sbjct  302  TVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAE  361

Query  374  NAAKMRQMLALYDEVQLLLRVGEYVQGQDKQTDEAVMRYGAIKDFLRQSVDEFSPYE  430
            +A+ +R++++  +E+QL++ +GEY  G++ + D A+   +++K  L Q+V ++S+++
Sbjct  362  QASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

244) Selsp_1699 in NC_015437


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  264 bits (987),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 176/413 (43%), Positives = 282/413 (69%), Gaps = 3/413 (0%)

Query  66   QVIGLVIESAGPNVSMGELCYVKSRFPHVEPIP-AEVVGFRDGHVLLMPIGEMQGIGPGC  124
            ++ G +IE+   +V++GELC ++    + + ++ A+VVG++  + +L  IG+ QG++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  125  EVVSAQKTLQVQVGPELLGRVLDGLGEPIDGKGPLLC--KHEYPLQADPPSPLERPRIRD  182
             + ++ ++L   VG  +LG VLD  G  ++   P +    +E  ++  PPS   R  +R+
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  183  SLYVGVRAIDGLITLGDGQRIGIMAGSGVGKSTLLSMIARNTEADISVIALVGERGREVK  242
            +L  GVRAIDGL+T G GQR+GI A++G GK+ L+ M+  +TEAD+ VI+L+GERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  243  EFIERDLGEEGLKRSVVVVATSDKPALVRIKGAMTATAIAEYFRDQGKRVVLMMDSVTRF  302
            EF++   + +   + V+V ATSD P++ R ++A  AT++AEYFRDQGKRVVL +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  303  AMAQREVGLTIGEPPATRGYTPSVFALLPRLLERAGTSRKGSITGIYTVLVDGDDMNEPI  362
            A A R+V+L+ GE PA RGY +SVF  LPRLLER+G++  GSIT++YTVL+++++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  363  ADAVRSILDGHIVLSRAIAAQNHFPAIDVLASVSRVMNEVVDEAHLKASQNLRALMAVYK  422
            AD +RSILDGH+ LSR +A+Q H+PAIDVL SVSRV  +V   +H   +  +R LM+   
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  423  EAEDLIHIGAYVKGSSQKIDTAVAKIDAINDFLRQGVFEQSSYEETEKTLESI  475
            E + +I++G Y  G +   D A+   D+++  L Q V + SS+++T   ++++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

245) Clo1100_2408 in NC_016791


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  264 bits (987),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 173/421 (42%), Positives = 283/421 (68%), Gaps = 9/421 (2%)

Query  13   LKSKEYIDYIGKVSKVVGLTIESDGPQVSIGNLCNIHIPGGNKL---KAEVVGFKDEKVL  69
            +K+   ++Y++   K+ G  IE++  +V+IG+LC+I+    +K    +A+VVG++ E+ +
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  70   LMPLGEMLGIGPGSTVSANGDTLKVAVGPELIGRVLDGLGNPID----DKGSLQSKHFYK  125
            L  +G+  G++ +  + + G +L   VG  ++G VLD  G+ ++    + +++   +   
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--V  118

Query  126  TDNKPPNPLTRKRISEPLPLGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMVARNTKA  185
             D  PP+  +R  + EPL  GVRAIDGLLT G GQR+GIFA++G GK+ LM M+  +T A
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  186  DINVIALIGERGREVREFLERDLTDEGLARSVVVVATSDQPALIRLKGAMVATAIAEYFR  245
            D+ VI+LIGERGREV EF++   + +   + V+V ATSD P++ R ++A +AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  246  DCGKDVLLLMDSLTRYAMAQREVGLSIGEPPVSRGYTPSVFSVFPKLLERAGTSEKGSIT  305
            D GK V+L++DS+TRYA A R+V+L+ GE P  RGY +SVF  +P+LLER+G++  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  306  GLYTVLVDGDDLTEPVTDTARGILDGHIVLSRAMANKNHYPAIDVLASVSRVMGDIINKE  365
            ++YTVL+++++ ++P++D  R+ILDGH+ LSR +A + HYPAIDVL SVSRV G++    
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  366  HKKSANEIKKIMAVHRDAEDLINIGAYVKGSNEKIDYAIESIDDITSFLQQETDEKVTFE  425
            H   A+ ++K+M+   + + +I++G Y  G N   D A++  D + + L Q   +  +F+
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  426  D  426
            D
Sbjct  419  D  419

246) Theco_2102 in NC_019897


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  264 bits (986),  Expect = 9e-72, Method: Compositional matrix adjust.
 Identities = 174/408 (43%), Positives = 283/408 (70%), Gaps = 8/408 (1%)

Query  29   QVIGLTVESEGPDASIGDVCLIYPAKSGKPI--KAEVVGFRNNKVLLMPLGELHAVGPGC  86
            ++ G  +E+E  D +IG++C I  +   K +  +A+VVG++ ++ +L  +G+ ++++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  87   DVVSTCKPLTVPVGSELLGKVLDGLGQPLDGSRIPARMTHYSTHNV--PSNPLFRPRVT-  143
             + +T ++L+  VG  +LG VLD  G+ ++  R+ + ++  S + V   + P + +RV  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  144  -EPLGIGVRAIDGLLTVGRGQRVGIFAGSGVGKSTLLGMVARNTSADVNVIALIGERGRE  202
             EPL  GVRAIDGLLT G GQR+GIFA++G GK+ L+ M+  +T ADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  203  VLEFIERDLGPEGLARSVVVVATSDQPALIRIKGALIATTIAEYFRDRGLDVMLMMDSVT  262
            V EF++   +++   + V+V ATSD P++ R ++A +ATT+AEYFRD+G  V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  263  RFAMAQREVGLAIGEPPATRGYTPSVFAMLPKLLERSGTGKTGSITAFYTVLVDGDDMNE  322
            R+A A R+V+LA GE PA RGY +SVF  LP+LLER+G+   GSITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  323  PIADAVRGILDGHIVLSRSLANKGHYPAIDILASVSRVMNDIVPAEQLEAANQFKRLLSI  382
            P+AD +R+ILDGH+ LSR LA +GHYPAID+L SVSRV  ++  + + E A+  ++L++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  383  YRDSEDLINIGAYQRGSNAEIDRAIEYYDRIRSYAMQRTDEKVSFEES  430
              + + +I++G Y+ G N + DRA++  D +++   Q   +  SF+++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

247) fliI in NC_012793


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  263 bits (984),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 168/387 (44%), Positives = 276/387 (72%), Gaps = 8/387 (2%)

Query  12   RVIGLMIEAKGPESSVGDICYIHTRSGRQKQLIA-AEVVGFKEQHVLLMPFSTVQHISPG  70
            ++ G +IEA   + ++G++C I+ R+ +QKQ++A A+VVG++ ++ +L  ++  Q +S +
Sbjct  15   KITGPIIEAELRDVAIGELCEIR-RGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  71   CIVEATGKPLQIHVGTPLIGQVLDPLGYPLDGSPLPKGLHPISIER----NPPNPLARPP  126
             ++ +TG++L   VG +++G VLDP G  ++   +   + PIS ER     PP+  +R  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEERVIDVAPPSYASRVG  131

Query  127  INEPIEVGVRIIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARHTNADINVIALIGERGR  186
            + EP+  GVR ID+LLT G GQR+GIFA++G GK+ LM M+  +T+AD+ VI+LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  187  EVREFIERDLGPEGLARSIVVVATSDQPALMRVKGAYTATAIAEYFRDQGMDVMFMMDSV  246
            EV EF++   +++   + ++V ATSD P++ R ++A  AT++AEYFRDQG  V++ +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  247  TRVAMAQREIGLAIGEPPTTKGYTPSVFAILPKLLERTGTSAYGTITAFYTVLVDGDDMN  306
            TR A A R+++LA GE P+ +GY +SVF  LP+LLER G+++ G+ITAFYTVL+++++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  307  EPIADTVRGILDGHFILERSLANRGQYPAINVLKSVSRVMNHIITPEHRQAADKLRQLLS  366
            +P+AD +R+ILDGH+ L R LA +G+YPAI+VLKSVSRV  ++ TP H + A  +R+L++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  367  TYINSEDLINIGAYKRGSSNEIDEAIR  393
               + + +I++G Y+ G + + D A++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQ  398

248) BTI_4115 in NC_021174


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  263 bits (984),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 183/403 (46%), Positives = 285/403 (71%), Gaps = 4/403 (0%)

Query  44   EATLGELCELRSAS--GALIQHAEVVGFTRNVALLSPFGTLGEINRGTRVIGLRRPLSVK  101
            + ++GELCE+R +     ++ +A+VVG+ R+ ++LS +G    ++R+  +    R+LS  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  102  VGHGILGRVIDSFGEPID--GRGELDYDALRPVIAPPPNPMSRRMVDAPLATGVRIVDGL  159
            VG ++LG V+D+ G  ++            R +  +PP+  SR  V  PL TGVR +DGL
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  160  ITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIgergrevrefveLIMGEDGM  219
            +T G GQRMGIFA+AG GK+ L+ M+   +  DV VI+LIGERGREV EFV+++ + +  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  220  ARSVVVCATSDRSSIERakaayaataiaEYFRDQGKRVLLMMDSLTRFARAGREIGLAAG  279
             + V+V ATSD +S++R +AA  AT++AEYFRDQGKRV+L +DS+TR+ARA R+++LA+G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  280  EPPARRGFPPSVFAELPRLLERTGMGEHGSITALYTVLAEDDSGSDPIAEEVRGILDGHI  339
            E PARRG+P+SVF +LPRLLER G   +GSITA+YTVL E +  +DP+A+E+R+ILDGH+
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  340  ILSREIAARNQYPAIDVLGSLSRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEYQ  399
             LSR +A++ +YPAIDVL S+SR+  QV+T  H   A+ +R+L+++  E++ +++LGEY+
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  400  AGSDPAADEAVAKIDRIRTFLNQRTDEYSPPDATLAALHALVQ  442
            +G +   D A+   D +++ L Q   +YS+ D TL++++A+ +
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

249) fliI in NC_009328


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  263 bits (982),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 272/386 (71%), Gaps = 8/386 (2%)

Query  10   RVIGLMTESKGPESSIGDLCYIHETSGGRKI--PAEVVGFHEQHVLLMPFSSMAHIAPGC  67
            ++ G + E+   + +IG+LC I+     +++   A+VVG++ ++ +L  +++   ++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  68   LVEATGKPLEVYVGDALIGTVLDPIGRPLDGSALPLGLKPVSVER----DPPNPLARPPI  123
            ++ +TG++L   VG +++G+VLDP G+ ++   +   + P+S ER     PP+  +R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  124  AEPLEVGVRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARRTSADVNVIALIGERGRE  183
             EPL  GVR ID+LL+ G GQR+GIFA++G GK+ LM M+  +T ADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  184  VREFLERDLGPEGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDSVT  243
            V EF++   +++   + V+V ATSD P++ R ++A  AT++AEYFRDQG  V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  244  RVAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDMNE  303
            R A A R+++LA GE P+ +GY +SVF  LP+LLER+G+ + G+ITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  304  PIADAVRGILDGHFVLERQLANKGQYPAINVLKSVSRVMPHIISAEHREAANRVRRLLST  363
            P+AD +R+ILDGH+ L R+LA +G+YPAI+VLKSVSRV  ++ ++ H E A+ VR+L++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  364  YIDSEDLIQIGAYKHGSSREIDEAIQ  389
              + + +I++G Y+ G + + D A+Q
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQ  398

250) Desru_1241 in NC_015589


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 172/415 (42%), Positives = 283/415 (69%), Gaps = 4/415 (0%)

Query  30   RVIGLMIEVQGINARIGEVCDIVVQGEAEPV--RAEVVGFRDLYSLLMPLGELRGIYPGC  87
            ++ G +IE +  +  IGE+C+I    +   V  RA+VVG++   ++L  +G+ +G+  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   AVVPSGHTLTVKIGRHLLGKVLDGLGRPIENHI--LNGQGEEYPVDNRPPNPLERKRINT  145
             + P+G++L+  +G  +LG VLD  G+ +E     +   +EE  +D  PP+   R  +  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  146  ILPTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARHGSADVNVIALVGERGREVL  205
             L TGVRAIDGLLTCG GQR+GIFA++G GK+ L+ M+  +  ADV VI+L+GERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  206  EFLEEDLGPEGMARSIVVAATSDQPALVRLKGAFVATAIAEYFRDQGLDVMLMMDSVTRF  265
            EF++   +++   + ++V ATSD P++ R ++A +AT++AEYFRDQG  V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  266  AMAQREVGLAVGEPPATKGYTPSVFALLPKLLERSGMGRRGSVTAFYTVLVDGDDLNEPI  325
            A A R+V+LA GE PA +GY +SVF  LP+LLER+G    GS+TAFYTVL+++++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  326  ADAVRGILDGHIVLSRSLASRNHYPSIDILQSVSRLMPDIASEEHKSQAGAIKDLLATYL  385
            AD +R+ILDGH+ LSR LA++ HYP+ID+L+SVSR+  ++++  H  QA+A++ L++   
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  386  QSEDLINIGAYVKGSNAKIDLAMLKYEEIVNFLKQSPTEHSGYEETLNALASLVS  440
            + + +I++G Y  G N   D AM   + +   L Q+ ++ S++++TL+++ ++  
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

251) Trebr_0967 in NC_015500


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  263 bits (983),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 179/431 (42%), Positives = 290/431 (68%), Gaps = 4/431 (0%)

Query  12   VKNTETILYTGNVSAVRGMLIESHGPRSVIGEMCFIKLMRGDMQIAA--EVVGLNGTTVQ  69
            +K    + Y +    + G +IE++     IGE+C I+  + + Q+ A  +VVGL+     
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  70   LMAYGETKGIEIGCEVVATGHVLRVAVGNGLLGRVIDAVGKPYDG-KGELAS-Glyypal  127
            L   G+++G+  +  + +TG+ L   VG ++LG V+D+ GK  +    E+A+ +      
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID  120

Query  128  asppaplERRPVSQRMVTGVRAIDAMLAVAKGQRLGIFAGSGVGKSTLLSMIARNTKADV  187
             +PP+   R  V + ++TGVRAID++L+ + GQR+GIFA++G GK+ L+ M+  +T ADV
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  188  NVIALVGERGREVVDFIDRDLGEEGLKRSVVVVATSDQPSIARLRAAYTATAVAEYFRDQ  247
             VI+L+GERGREV +F+D   + +   + V+V ATSD PS+ R  AA  AT+VAEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  248  GKDVMLMFDSVTRFAHAQREIGLASGEPPAQRGYPPSVFDLLPKLLERSGTNQTGSITAF  307
            GK V+L +DS+TR+A+A R+++LASGE PA+RGYP+SVFD LP+LLER+G+   GSITAF
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAF  300

Query  308  YTVLVDGDDMDEPIADKVRGTLDGHIVLNRKLAQAAHFPAIDVLASISRLSKRVSGPATQ  367
            YTVL+++++  +P+AD +R+ LDGH+ L+RKLA  +H+PAIDVL S+SR+  +V+ P+  
Sbjct  301  YTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHA  360

Query  368  QAVTTVRRLMASYAENEDMITVGAYQKGSNAAIDKAIDVHPDIEAFLMQDEYEPAPLEST  427
            +  ++VR+LM+   E +  I +G Y+ G N   D+A++++  + A L Q   + ++++ T
Sbjct  361  EQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

Query  428  LEKLGSIAGTD  438
            L  + ++A+ +
Sbjct  421  LSGMNAFADQN  431

252) escN in NC_013364


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (981),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 167/346 (49%), Positives = 254/346 (74%), Gaps = 4/346 (1%)

Query  99   GDEFKIRVGDALLGRLVDGIGRPME--SNIAAPYLPFERSLYAEPPDPLLRQVIDQPFIL  156
            G  +  +VG ++LG ++D  G+ +E  +   AP ++ ER +   PP    R  + +P+I 
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTPEVAP-ISEERVIDVAPPSYASRVGVREPLIT  138

Query  157  GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA  216
            GVRAIDGLLTCG+GQR+GIFA++G GK+ L+ M+ + + AD++V++LIGERGREV EF+ 
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  217  LLPQS-TLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA  275
            +L  S    KCVLV +TSD P+++R +AA  ATT+AEYFRDQGK V+L +DS+TRYARA 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  276  RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEV  335
            RDV+LASGE   R G+P+SVF +LP+LLER+G+++ GSITA+YTVLLES++  DP++DE+
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEI  318

Query  336  RSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYNNVEL  395
            RSILDGH+ L+R LA + H+PAID+  S SRV  +V T+ H   A+  +KL++  ++++L
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  396  LIRIGEYTMGQDPEADKAIKNRKLIQSFIQQSTKDISSYEKTIENL  441
            +I +GEY  G++ + D+A++ R  +++ + Q+  + SS++ T+  +
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

253) Tmar_0981 in NC_014831


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (981),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 172/425 (41%), Positives = 288/425 (68%), Gaps = 18/425 (4%)

Query  46   GWVEQVVGLAVEARGPVSSLGELC-----WIHRAGLPPVPAEVVGFRGPHTLLMPLGDAR  100
            +  +++ G  +EA     ++GELC     W ++  ++   A+VVG++  +T+L  +G+A+
Sbjct  11   AYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVAR--AQVVGLQRERTVLSLIGNAQ  68

Query  101  AIRPGSLVEATGR------GFTVgvgegllgrvldglgrpldgQGPVAVEAWYPAEGEPP  154
            ++  + ++ +TGR      G++V  +       +     P    +P++ E     +  PP
Sbjct  69   GLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEV--APISEER--VIDVAPP  124

Query  155  PPLARQPIREPLPVGVRSIDALLTCGRGQRVGIFAGSGVGKSTLLAMMTRHTAADVVVVA  214
            +  +R  +REPL  GVR+ID+LLTCG GQR+GIFA++G GK+ L+ M+  +T ADV V++
Sbjct  125  SYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIG  184

Query  215  LIGERNREVRDFVDHHLAGSRR-RTVVVAATADRPALVRIKAAQVATAIAEFFRDRGRHV  273
            LIGER REV +FVD   A+ ++ + V+V AT+D P++ R +AAQ+AT++AE+FRD+G++V
Sbjct  185  LIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRV  244

Query  274  LLVMDSVTRYAMALREVGLAVGEPPATRGYPPSVFAALPRLLERAGTGPRGSITGFYTVL  333
            +L +DS+TRYA ALR+V+LA GE PA RGYP+SVF  LPRLLER+G+ + GSIT+FYTVL
Sbjct  245  VLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVL  304

Query  334  VDGDDLNEPIADAVRGTLDGHIVLSRQLAEEGQFPAVDVLASVSRLMPELVEPAHWAAAQ  393
            +++++  +P+AD +R+ LDGH+ LSR+LA +G++PA+DVL SVSR+  ++  P+H   A 
Sbjct  305  LESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQAS  364

Query  394  RLRRWLGAYREARDLLEIGAYQRGSNPDVDRALERMPAIRAFLTQGRDEASPFAEAVARL  453
             +R+ +    E + ++++G Y+ G N D DRA++   +++A L Q   + S+F ++++ +
Sbjct  365  AVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

Query  454  QEVAG  458
            +  A+
Sbjct  425  NAFAD  429

254) Bphyt_5207 in NC_010676


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (979),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 156/348 (45%), Positives = 254/348 (73%), Gaps = 8/348 (2%)

Query  92   SWGRLDALDMLGRVVDGLGRPLDGRVAPK--AVSAQHSMNILSHINPLDRPVISTPFPTG  149
            +W    +  +LG V+D  G+ ++ R +P   ++S ++ +++ +   +  R  +  P+ TG
Sbjct  85   AWV---GYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYA-SRVGVREPLITG  139

Query  150  VRVIDGLLSCGVGQRVGIFAAAGGGKSTLMGMIANGASVDAIVVALIGERGREVGEFIHD  209
            VR IDGLL+CGVGQR+GIFA+AG GK+ LM M+ + +  D +V++LIGERGREV EF++ 
Sbjct  140  VRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDM  199

Query  210  -HLGARRASSIVIASTSERPAAERIKAAELACRVASDLRAEGKHVLLLFDSLTRYARALR  268
             + + ++   +++ +TS+ P+ +R +AA+LA  VA  +R +GK+V+L++DS+TRYARALR
Sbjct  200  LRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALR  259

Query  269  EVGLAVGEPPVRRGYPPRVFAELPRLIETAGLTRQGAVTAFFTVLAEDEEMSDPVAEEAR  328
            +V+LA GE P RRGYP+ VF +LPRL+E +G T +G++TAF+TVL E EE +DP+A+E R
Sbjct  260  DVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIR  319

Query  329  SLLDGHIQLSGRLGGAGHYPAIDVLKSKSRVMTRVTSRAHRDDAGRVRGWMSRYQEVELL  388
            S+LDGH+ LS +L+G GHYPAIDVLKS SRV  +VT+ +H ++A+ VR  M+R +E++L+
Sbjct  320  SILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLF  379

Query  389  LQIGEYRRGNDSASDLAIDRHEMIERFLRQRHDEYSDWEATIGSLSAL  436
            +++GEYR G++  +D A++ ++ +   L Q   +YS  + T+++++A+
Sbjct  380  IDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

255) Meso_0107 in NC_008254


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (979),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 174/414 (43%), Positives = 290/414 (71%), Gaps = 12/414 (2%)

Query  19   KAVGPVVRAA-GNFCVGEICAVSRSNGDPIL---AEVVGFDQGEAILTPYGGTAGISHNS  74
            K  GP++ A   +  +GE+C + R+  +  +   A+VVG+++  ++L+  G + G+S++ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  75   TIEPLMSTFEVPVGEELTGRVIDAMGKPIDA-GPSVTSCAFYPGHR----TAPNPMLRPT  129
             + P   ++   VG  + G V+D+ GK ++   P V++    + +R    ++P+   R  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAP---ISEERVIDVAPPSYASRVG  131

Query  130  IDRPFILGVRVLDGALTCGEGQRMGIFAAAGGGKSTLVSLMVRFAEYDRCVIALIGERGR  189
            +  P+I GVR +DG LTCG GQRMGIFA+AG GK+ L+ +++  +E D  VI+LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  190  EVREFLEHQLGPTGLAKSIVVVATSDRPAIEQVKAAYTATALAEFHRDRGERVLLIMDSL  249
            EV EF++   ++    K ++V ATSD P++++ +AA  AT++AE+ RD+G RV+L++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  250  TRFARAQRQIGLAAGEPPTRRGFPPSVFELLPGLVERAGLSGDGSITAFYTVLVEGDDMN  309
            TR+ARA R+++LA+GE P+RRG+P+SVF+ LP L+ER+G +++GSITAFYTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  310  EPVADEVRSLLDGHIVLSRKLAEAGHYPPVDVITSTSRILSRIVSPDHLEAVHKARGLMS  369
            +P+ADE+RS+LDGH+ LSRKLA  GHYP++DV+ S SR+++++ +P H E     R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  370  KLQEIELLLKIGEYSKGadaladealarrtaldaFLRQGVNEFSSFEETVIALK  423
            +L+E++L++ +GEY  G +   D A+  R +L A L Q V ++SSF++T+ +++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

256) Dhaf_4147 in NC_011830


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (980),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 175/413 (43%), Positives = 285/413 (70%), Gaps = 10/413 (2%)

Query  25   KIVGLMIESDGPRVSVGEYCRIHTQ-QGKEI--PAEVVGFRNSTTLLMPLAELEGIAPGD  81
            KI G +IE++   V++GE C I+   + K++   A+VVG++   T+L  +++ +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  82   RVVPQQHKLEVGVGQALLGRILDGLGRPLD-----GRPMVTQRDYPLQNAPPSAFLRPRI  136
             + P  + L   VG ++LG +LD  G+ ++       P+  +R   ++ APPS   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGV  132

Query  137  RDPLSVGVRTVDGILTIGRGQRIGIFAGSGVGKSTLLGMMARNTTAGVNVIALVGERGRE  196
            R+PL  GVR++DG+LT G GQR+GIFA++G GK+ L+ M+  +T A+V VI+L+GERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  197  LRDFIEKDLGEEGLERSVLVVATSDQPALVRLKAAFTATAIAEYFRDQGQDVLLMMDSVT  256
            + +F++   + +  E+ VLV ATSD P++ R +AA  AT++AEYFRDQG+ V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  257  RFAMAQREVGLTAGEPPATRGYPPSVFAMLPKLLERSGMSEIGSITGIYTVLVDGDDHNE  316
            R+A A R+V+L++GE PA RGYP+SVF  LP+LLER+G +  GSIT++YTVL++++++ +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  317  PIADTVRGILDGHIVLTRELAMQNHYPAIDTLQSVSRVMNDIIAPEHKELAGKLREHLAV  376
            P+AD +R+ILDGH+ L+R LA Q HYPAID L+SVSRV  ++ +P H E A+ +R  ++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  377  YHDAKDLIDIGAYVTGSNPRIDAAIRHIEGINGFLRQDVEEKVSFDQMLRQLQ  429
             ++ + +ID+G Y  G N   D A++  +++++ L Q V +  SFD+ L  ++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

257) fliI in NC_020134


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (981),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 172/427 (41%), Positives = 288/427 (68%), Gaps = 8/427 (1%)

Query  36   LTDKRFVSFKGQVTKVVGLTIESKGPESRVGELCRIVNPRTKLEVLA--EVVGFRDNHVL  93
            +   R++ + +   K+ G  IE+   +  +GELC I   + + +V+A  +VVG++ ++ +
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  94   LMPLGEMTGIGPGSEVIATGTELKVRVGHGLLGRVLDGLGNPID----GKGNIPAEGFYP  149
            L  +G+  G++ +  + +TG  L  +VG ++LG VLD  G+ ++      + I+ E    
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--V  118

Query  150  VDNIPPHPLTRPRIKEVLPLGVKCIDSMLTLGKGQRMGIFAGSGVGKSTLIGMIARNTKA  209
            +D  PP   +R  ++E L  GV+ ID++LT G GQRMGIFA++G GK+ L+ M+  +T A
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  210  DIIVIGLIGERGREVRDFLERDLTEEGLKRSVVVVATSDQPALIRKKGAMVATAIAEYFR  269
            D++VIGLIGERGREV +F++   + +   + V+V ATSD P++ R ++A +AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  270  DCGYDVLLLMDSLTRFSMAQREIGLAIGEPPVSRGYTPSVFSVMPKLLERSGTSDKGSIT  329
            D G  V+L++DS+TR++ A R+++LA GE P  RGY +SVF  +P+LLER+G++  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  330  GLYTVLVDGDDMTEPVTDTARSILDGHVVLSRQLAHKNHYPAIDVLGSISRVMSDIVTDE  389
            ++YTVL+++++ ++P++D  RSILDGH+ LSR+LA + HYPAIDVL S+SRV +++ T  
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  390  HKKIAGEIRKNLAVYREAEDLINVGAYVKGSNPEIDRAISVIGNINAFLTQSVNEKFDFE  449
            H   A+ +RK ++   E + +I++G Y  G N + DRA+ + ++++A L Q+V +   F+
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  450  ETLELMK  456
            +TL  M+
Sbjct  419  DTLSGMN  425

258) fliI in NC_020887


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (980),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 172/427 (41%), Positives = 288/427 (68%), Gaps = 8/427 (1%)

Query  14   LTDKRFVSFKGQVTKVVGLTIESKGPESRVGELCRIVNPRTKLEVLA--EVVGFRDNHVL  71
            +   R++ + +   K+ G  IE+   +  +GELC I   + + +V+A  +VVG++ ++ +
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  72   LMPLGEMTGIGPGSEVIATGTELKVRVGHGLLGRVLDGLGNPID----GKGNIPAEGFYP  127
            L  +G+  G++ +  + +TG  L  +VG ++LG VLD  G+ ++      + I+ E    
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--V  118

Query  128  VDNIPPHPLTRPRIKEVLPLGVKCIDSMLTLGKGQRMGIFAGSGVGKSTLIGMIARNTKA  187
            +D  PP   +R  ++E L  GV+ ID++LT G GQRMGIFA++G GK+ L+ M+  +T A
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  188  DIIVIGLIGERGREVRDFLERDLTEEGLKRSVVVVATSDQPALIRKKGAMVATAIAEYFR  247
            D++VIGLIGERGREV +F++   + +   + V+V ATSD P++ R ++A +AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  248  DCGYDVLLLMDSLTRFSMAQREIGLAIGEPPVSRGYTPSVFSVMPKLLERSGTSDKGSIT  307
            D G  V+L++DS+TR++ A R+++LA GE P  RGY +SVF  +P+LLER+G++  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  308  GLYTVLVDGDDMTEPVTDTARSILDGHVVLSRQLAHKNHYPAIDVLGSISRVMSDIVTDE  367
            ++YTVL+++++ ++P++D  RSILDGH+ LSR+LA + HYPAIDVL S+SRV +++ T  
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  368  HKKIAGEIRKNLAVYREAEDLINVGAYVKGSNPEIDRAISVIGNINAFLTQSVNEKFDFE  427
            H   A+ +RK ++   E + +I++G Y  G N + DRA+ + ++++A L Q+V +   F+
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  428  ETLELMK  434
            +TL  M+
Sbjct  419  DTLSGMN  425

259) ECH74115_5062 in NC_011353


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (978),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 167/346 (49%), Positives = 253/346 (74%), Gaps = 4/346 (1%)

Query  99   GDEFKIRVGDALLGRLVDGIGRPME--SNIAAPYLPFERSLYAEPPDPLLRQVIDQPFIL  156
            G  +  +VG ++LG ++D  G+ +E  +   AP ++ ER +   PP    R  + +P+I 
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTPEVAP-ISEERVIDVAPPSYASRVGVREPLIT  138

Query  157  GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA  216
            GVRAIDGLLTCG+GQR+GIFA++G GK+ L+ M+ + + AD++V++LIGERGREV EF+ 
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  217  LLPQS-TLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA  275
            +L  S    KCVLV +TSD P+++R +AA  ATT+AEYFRDQGK V+L +DS+TRYARA 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  276  RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEV  335
            RDV+LASGE   R G+P+SVF +LP+LLER+G+++ GSITA+YTVLLES++  DP++DE+
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEI  318

Query  336  RSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVEL  395
            RSILDGH+ L+R LA + H+PAID+  S SRV  +V T+ H   A+  +KL++   +++L
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  396  LIRIGEYTMGQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESL  441
            +I +GEY  G++ + D+A++ R  ++  + Q+  + SS++ T+ ++
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

260) escN in NC_002655


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (978),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 167/346 (49%), Positives = 253/346 (74%), Gaps = 4/346 (1%)

Query  99   GDEFKIRVGDALLGRLVDGIGRPME--SNIAAPYLPFERSLYAEPPDPLLRQVIDQPFIL  156
            G  +  +VG ++LG ++D  G+ +E  +   AP ++ ER +   PP    R  + +P+I 
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTPEVAP-ISEERVIDVAPPSYASRVGVREPLIT  138

Query  157  GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA  216
            GVRAIDGLLTCG+GQR+GIFA++G GK+ L+ M+ + + AD++V++LIGERGREV EF+ 
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  217  LLPQS-TLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA  275
            +L  S    KCVLV +TSD P+++R +AA  ATT+AEYFRDQGK V+L +DS+TRYARA 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  276  RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEV  335
            RDV+LASGE   R G+P+SVF +LP+LLER+G+++ GSITA+YTVLLES++  DP++DE+
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEI  318

Query  336  RSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVEL  395
            RSILDGH+ L+R LA + H+PAID+  S SRV  +V T+ H   A+  +KL++   +++L
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  396  LIRIGEYTMGQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESL  441
            +I +GEY  G++ + D+A++ R  ++  + Q+  + SS++ T+ ++
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

261) ECs4568 in NC_002695


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (978),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 167/346 (49%), Positives = 253/346 (74%), Gaps = 4/346 (1%)

Query  99   GDEFKIRVGDALLGRLVDGIGRPME--SNIAAPYLPFERSLYAEPPDPLLRQVIDQPFIL  156
            G  +  +VG ++LG ++D  G+ +E  +   AP ++ ER +   PP    R  + +P+I 
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTPEVAP-ISEERVIDVAPPSYASRVGVREPLIT  138

Query  157  GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA  216
            GVRAIDGLLTCG+GQR+GIFA++G GK+ L+ M+ + + AD++V++LIGERGREV EF+ 
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  217  LLPQS-TLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA  275
            +L  S    KCVLV +TSD P+++R +AA  ATT+AEYFRDQGK V+L +DS+TRYARA 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  276  RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEV  335
            RDV+LASGE   R G+P+SVF +LP+LLER+G+++ GSITA+YTVLLES++  DP++DE+
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEI  318

Query  336  RSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVEL  395
            RSILDGH+ L+R LA + H+PAID+  S SRV  +V T+ H   A+  +KL++   +++L
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  396  LIRIGEYTMGQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESL  441
            +I +GEY  G++ + D+A++ R  ++  + Q+  + SS++ T+ ++
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

262) escN in NC_013008


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (978),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 167/346 (49%), Positives = 253/346 (74%), Gaps = 4/346 (1%)

Query  99   GDEFKIRVGDALLGRLVDGIGRPME--SNIAAPYLPFERSLYAEPPDPLLRQVIDQPFIL  156
            G  +  +VG ++LG ++D  G+ +E  +   AP ++ ER +   PP    R  + +P+I 
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTPEVAP-ISEERVIDVAPPSYASRVGVREPLIT  138

Query  157  GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA  216
            GVRAIDGLLTCG+GQR+GIFA++G GK+ L+ M+ + + AD++V++LIGERGREV EF+ 
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  217  LLPQS-TLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA  275
            +L  S    KCVLV +TSD P+++R +AA  ATT+AEYFRDQGK V+L +DS+TRYARA 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  276  RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEV  335
            RDV+LASGE   R G+P+SVF +LP+LLER+G+++ GSITA+YTVLLES++  DP++DE+
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEI  318

Query  336  RSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVEL  395
            RSILDGH+ L+R LA + H+PAID+  S SRV  +V T+ H   A+  +KL++   +++L
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  396  LIRIGEYTMGQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESL  441
            +I +GEY  G++ + D+A++ R  ++  + Q+  + SS++ T+ ++
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

263) escN in NC_013941


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (978),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 167/346 (49%), Positives = 253/346 (74%), Gaps = 4/346 (1%)

Query  99   GDEFKIRVGDALLGRLVDGIGRPME--SNIAAPYLPFERSLYAEPPDPLLRQVIDQPFIL  156
            G  +  +VG ++LG ++D  G+ +E  +   AP ++ ER +   PP    R  + +P+I 
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTPEVAP-ISEERVIDVAPPSYASRVGVREPLIT  138

Query  157  GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA  216
            GVRAIDGLLTCG+GQR+GIFA++G GK+ L+ M+ + + AD++V++LIGERGREV EF+ 
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  217  LLPQS-TLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA  275
            +L  S    KCVLV +TSD P+++R +AA  ATT+AEYFRDQGK V+L +DS+TRYARA 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  276  RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEV  335
            RDV+LASGE   R G+P+SVF +LP+LLER+G+++ GSITA+YTVLLES++  DP++DE+
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEI  318

Query  336  RSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVEL  395
            RSILDGH+ L+R LA + H+PAID+  S SRV  +V T+ H   A+  +KL++   +++L
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  396  LIRIGEYTMGQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESL  441
            +I +GEY  G++ + D+A++ R  ++  + Q+  + SS++ T+ ++
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

264) ECO55CA74_21225 in NC_017656


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (978),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 167/346 (49%), Positives = 253/346 (74%), Gaps = 4/346 (1%)

Query  99   GDEFKIRVGDALLGRLVDGIGRPME--SNIAAPYLPFERSLYAEPPDPLLRQVIDQPFIL  156
            G  +  +VG ++LG ++D  G+ +E  +   AP ++ ER +   PP    R  + +P+I 
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTPEVAP-ISEERVIDVAPPSYASRVGVREPLIT  138

Query  157  GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA  216
            GVRAIDGLLTCG+GQR+GIFA++G GK+ L+ M+ + + AD++V++LIGERGREV EF+ 
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  217  LLPQS-TLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA  275
            +L  S    KCVLV +TSD P+++R +AA  ATT+AEYFRDQGK V+L +DS+TRYARA 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  276  RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEV  335
            RDV+LASGE   R G+P+SVF +LP+LLER+G+++ GSITA+YTVLLES++  DP++DE+
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEI  318

Query  336  RSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVEL  395
            RSILDGH+ L+R LA + H+PAID+  S SRV  +V T+ H   A+  +KL++   +++L
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  396  LIRIGEYTMGQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESL  441
            +I +GEY  G++ + D+A++ R  ++  + Q+  + SS++ T+ ++
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

265) CDCO157_4303 in NC_017906


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (978),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 167/346 (49%), Positives = 253/346 (74%), Gaps = 4/346 (1%)

Query  99   GDEFKIRVGDALLGRLVDGIGRPME--SNIAAPYLPFERSLYAEPPDPLLRQVIDQPFIL  156
            G  +  +VG ++LG ++D  G+ +E  +   AP ++ ER +   PP    R  + +P+I 
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTPEVAP-ISEERVIDVAPPSYASRVGVREPLIT  138

Query  157  GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA  216
            GVRAIDGLLTCG+GQR+GIFA++G GK+ L+ M+ + + AD++V++LIGERGREV EF+ 
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  217  LLPQS-TLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA  275
            +L  S    KCVLV +TSD P+++R +AA  ATT+AEYFRDQGK V+L +DS+TRYARA 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  276  RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEV  335
            RDV+LASGE   R G+P+SVF +LP+LLER+G+++ GSITA+YTVLLES++  DP++DE+
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEI  318

Query  336  RSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNVEL  395
            RSILDGH+ L+R LA + H+PAID+  S SRV  +V T+ H   A+  +KL++   +++L
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  396  LIRIGEYTMGQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESL  441
            +I +GEY  G++ + D+A++ R  ++  + Q+  + SS++ T+ ++
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

266) fliI1 in NC_005810


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (978),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  28   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  81
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  82   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  137
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  138  PLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  197
              +R  V + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  198  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  257
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  258  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  317
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  318  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  377
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  378  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  410
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

267) YpsIP31758_3818 in NC_009708


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (979),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 176/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  27   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  80
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  81   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  136
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  137  PLTRQPVEQMLTTGVRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  196
              +R  V + L TGVRAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  197  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  256
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  257  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  316
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  317  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  376
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  377  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  409
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

268) DSY2986 in NC_007907


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (979),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 175/413 (43%), Positives = 285/413 (70%), Gaps = 10/413 (2%)

Query  25   KIVGLMIESDGPRVSVGEYCRIHTQ-QGKEI--PAEVVGFRNSTTLLMPLAELEGIAPGD  81
            KI G +IE++   V++GE C I+   + K++   A+VVG++   T+L  +++ +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  82   RVVPQQHKLEVGVGQALLGRILDGLGRPLD-----GRPMVTHRDYPLQNAPPSAFLRPRI  136
             + P  + L   VG ++LG +LD  G+ ++       P+  +R   ++ APPS   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGV  132

Query  137  RDPLSVGVRTVDGILTIGRGQRIGIFAGSGVGKSTLLGMMARNTTAGVNVIALVGERGRE  196
            R+PL  GVR++DG+LT G GQR+GIFA++G GK+ L+ M+  +T A+V VI+L+GERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  197  LRDFIEKDLGEEGLERSVLVVATSDQPALVRLKAAFTATAIAEYFRDQGQDVLLMMDSVT  256
            + +F++   + +  E+ VLV ATSD P++ R +AA  AT++AEYFRDQG+ V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  257  RFAMAQREVGLTTGEPPATRGYPPSVFAMLPKLLERSGMSEIGSITGIYTVLVDGDDHNE  316
            R+A A R+V+L++GE PA RGYP+SVF  LP+LLER+G +  GSIT++YTVL++++++ +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  317  PIADTVRGILDGHIVLTRELAMQNHYPAIDTLQSVSRVMNDIIAPEHKELAGKLREHLAV  376
            P+AD +R+ILDGH+ L+R LA Q HYPAID L+SVSRV  ++ +P H E A+ +R  ++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  377  YHDAKDLIDIGAYVTGSNPRIDAAIRHIEGINGFLRQDVEEKVSFDQMLQQLQ  429
             ++ + +ID+G Y  G N   D A++  +++++ L Q V +  SFD+ L  ++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

269) B1NLA3E_18115 in NC_021171


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (978),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 278/407 (69%), Gaps = 6/407 (1%)

Query  26   QIIGLTIESQGPDVRIGELCSIFPAHSQTPI--QAEVVGIRENKVLLMPLGEVRSIGPGC  83
            +I G  IE++  DV IGELC I  +  Q  +  +A+VVG++ ++ +L  +G+ ++++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  84   DVVASGKPLMVKAGHQLLGRVLDGLG---QPLDGKPLPFGLGEVPAHAMPPNPLMRPRIQ  140
             + ++G++L    G  +LG VLD  G   + +     P++  E   +  PP+   R  ++
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPIS-EERVIDVAPPSYASRVGVR  133

Query  141  YPLGVGVRTIDGLLTMGKGQRFGIFAGSGVGKSTLLGMISRNTTAEVNVIALIGERGREV  200
             PL  GVR+IDGLLT G GQR GIFA++G GK+ L+ M+  +T A+V VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  201  NDFLEQNLGKEGLKKSVVIVATSDQPALIRIKGALTATSIAEYFRDQGKDVLLVMDSVTR  260
             +F++   + +   K V++ ATSD P++ R ++A  AT++AEYFRDQGK V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  261  FAMAQREIGLAIGEPPTTKGYTPSVFAMLPQLLERAGTGQKGSISAIYTVLVDGDDMNEP  320
            +A A R+++LA GE P+ +GY +SVF  LP+LLER+G+   GSI+A+YTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  321  IADAVRGILDGHIVLNRAIAGKGIFPSIDVLNSVSRVMTEVTSDEHLNAASNLKKLLGAY  380
            +AD +R+ILDGH+ L+R +AG+G +P+IDVL+SVSRV  +VT+  H + AS ++KL+   
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  381  NEAEDLINIGAYKKGSNREIDLAIRLKPQMDQFLRQGIFETSMLEDA  427
            +E + +I++G Y+ G N + D A++++  +   L Q + + S ++D+
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

270) YPA_4016 in NC_008150


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (978),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  30   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  83
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  84   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  139
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  140  PLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  199
              +R  V + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  200  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  259
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  260  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  319
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  320  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  379
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  380  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  412
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

271) YPN_3401 in NC_008149


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (978),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  30   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  83
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  84   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  139
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  140  PLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  199
              +R  V + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  200  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  259
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  260  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  319
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  320  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  379
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  380  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  412
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

272) YPDSF_3704 in NC_009381


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  262 bits (978),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  30   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  83
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  84   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  139
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  140  PLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  199
              +R  V + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  200  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  259
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  260  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  319
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  320  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  379
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  380  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  412
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

273) A1122_03805 in NC_017168


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (977),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  27   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  80
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  81   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  136
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  137  PLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  196
              +R  V + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  197  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  256
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  257  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  316
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  317  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  376
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  377  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  409
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

274) YpAngola_A3933 in NC_010159


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (977),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  27   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  80
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  81   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  136
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  137  PLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  196
              +R  V + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  197  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  256
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  257  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  316
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  317  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  376
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  377  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  409
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

275) YPC_0741 in NC_017265


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (977),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  27   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  80
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  81   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  136
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  137  PLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  196
              +R  V + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  197  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  256
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  257  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  316
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  317  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  376
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  377  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  409
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

276) YPO0267 in NC_003143


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (977),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  27   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  80
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  81   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  136
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  137  PLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  196
              +R  V + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  197  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  256
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  257  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  316
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  317  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  376
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  377  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  409
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

277) YPD4_0231 in NC_017154


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (977),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  27   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  80
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  81   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  136
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  137  PLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  196
              +R  V + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  197  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  256
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  257  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  316
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  317  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  376
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  377  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  409
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

278) YPD8_0236 in NC_017160


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (977),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  27   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  80
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  81   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  136
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  137  PLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  196
              +R  V + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  197  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  256
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  257  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  316
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  317  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  376
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  377  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  409
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

279) fliI in NC_004088


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (977),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  27   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  80
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  81   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  136
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  137  PLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  196
              +R  V + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  197  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  256
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  257  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  316
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  317  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  376
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  377  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  409
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

280) YPZ3_0229 in NC_014029


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (977),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  27   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  80
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  81   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  136
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  137  PLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  196
              +R  V + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  197  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  256
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  257  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  316
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  317  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  376
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  377  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  409
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

281) YPTB0323 in NC_006155


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (977),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  27   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  80
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  81   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  136
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  137  PLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  196
              +R  V + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  197  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  256
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  257  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  316
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  317  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  376
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  377  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  409
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

282) YPTS_0347 in NC_010634


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (977),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 284/393 (73%), Gaps = 11/393 (2%)

Query  27   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  80
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  81   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  136
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  137  PLTRQPVEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  196
              +R  V + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  197  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  256
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  257  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  316
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  317  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  376
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  377  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  409
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

283) fliI in NC_010723


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (977),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 170/415 (41%), Positives = 279/415 (68%), Gaps = 10/415 (2%)

Query  20   YTEGVVNKVIGLTVEVKGIKAFVGELCII---YNEKDIPINCEVVGFKDGFVVLMPLDEL  76
            Y + +   +I    E++++   +GELC I    ++K++    +VVG++    VL  +++ 
Sbjct  12   YPQKITGPIIE--AELRDVA--IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNA  67

Query  77   IGISPGCRVVPMRKPLSVRCSDKLLGEIIDGLGK---PLRGEELVEGEDYPLENNPPDPL  133
             G+S +  + P  ++LS + +  +LG ++D  GK    +  E    +E+  ++  PP   
Sbjct  68   QGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA  127

Query  134  KRKRIKEIMPTGIRAIDGFLTCGDGQRIGIFAGSGVGKSTTLGMIAREAKADVNVIALIG  193
             R  ++E + TG+RAIDG+LTCG GQR+GIFA++G GK+  + M+  ++ ADV VI+LIG
Sbjct  128  SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIG  187

Query  194  ERGREVLEFIEKDLGPEGMKKSVVVCATSDKPALIRLKGALTATAIAEYFRDKGKKVILM  253
            ERGREV EF++   +++   K V+V ATSD P++ R ++A  AT++AEYFRD+GK+V+L 
Sbjct  188  ERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLF  247

Query  254  MDSVTRFAMAQREVGLAIGEPPATKGYTPSVFAKLPKLMERSGTSEDGSITAFYTVLVDG  313
            +DS+TR+A A R+V+LA GE PA +GY +SVF +LP+L+ER+G++ +GSITAFYTVL+++
Sbjct  248  IDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLES  307

Query  314  DDFNEPIADAVRGILDGHIVLSRSLAHKNHYPAIDILNSVSRLMNSIAPPEHIQAASIAR  373
            ++  +P+AD +R+ILDGH+ LSR LA + HYPAID+L+SVSR+   ++ P H + AS  R
Sbjct  308  EEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVR  367

Query  374  DLLATYKESEDLINIGAYVKGSNKKIDLAISYHDKIEEFLRQTVNEKSNFEESIG  428
             L++   E + +I++G Y  G N   D A+  +D +   L Q V + S+F+++++
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

284) hrcN in NC_017575


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (976),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 186/417 (45%), Positives = 289/417 (70%), Gaps = 13/417 (3%)

Query  15   RTAPLIRRFGKVVEVTGTLLRVGGVDVRLGELCTLTEA--DGTVMQEGEVVGFSEHFALV  72
            +T+ L++ ++    +TG ++     DV +GELC +  +  +  V+  ++VVG+  + +++
Sbjct  2    KTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVL  61

Query  73   APFSGVTGLSRSTRVVPSGRALSVGIgpgllgrvldglgrpADG-GPPLDVVEHVPVFAN  131
            + ++   GLSR   + P+GRALS  +G ++LG VLD  G+  +   P +  + +  V+  
Sbjct  62   SLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV  121

Query  132  APDPMTRRL-VEHPLATGVRVIDGLATLAEGQRMGIFAPAGVGKSTLMGMFARGTECDVN  190
            AP + + R+ V +PL TGVR IDGL T + GQRMGIFA+AG GK+ LM M+   TE DV 
Sbjct  122  APPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVF  181

Query  191  VIVLIGERGREVREFIEQILGEEGMRRSVVVCATSDRSAVERAKAAHVGTAVAEYFRDQG  250
            VI LIGERGREV EF++ + + +   + V+V ATSD ++V+R +AA+++T+VAEYFRDQG
Sbjct  182  VIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQG  241

Query  251  LRVLLMMDSLTRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMSSAGSITALY  310
             RV+L +DS+TR+ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G +S GSITA+Y
Sbjct  242  KRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFY  301

Query  311  TVLAEDESGNDPVAEEVRGILDGHLILSRDIAARNRYPAIDILNSLSRVMTQVMPREHCD  370
            TVL E E   DP+A+E+R+ILDGHL LSR +A++ +YPAID+L+S+SRV  QV    H +
Sbjct  302  TVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAE  361

Query  371  AAGRMRQLLAKYNEVETLLQMGEYKEGSDPVADAAVQWNDWMEGFLRQRTDEW-CSP  426
             A+ +R+L+++ +E++ ++++GEY+ G +   D A+Q        +R+    W C P
Sbjct  362  QASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ--------MRDSLKAWLCQP  410

285) sctO in NC_015713


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (976),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 181/414 (44%), Positives = 280/414 (68%), Gaps = 8/414 (1%)

Query  29   IVGMLIKAVVPNVKMGEVCLIKR--DGDPLIA--EVVGFTKEEVYLSPLGEMTGVGPSSE  84
            I G +I A + +V +GE+C I+R  +   ++A  +VVG+ +E   LS +G+  G++    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  85   VIPMRLPLHIKVGPNLLGRVLDGLGHPLD--TAEKGPLELEETYSVLNAPPDPLKREMID  142
            + P   +L   VG ++LG VLD  G  ++  T+E +P+  E    V  APP    R  + 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV--APPSYASRVGVR  133

Query  143  KPISTGIRAIDGVLTAGRGQRIGIFAAAGGGKSTTLGMIARYAQADVNVITLIGERGREV  202
             P+ TG+RAIDG+LT G GQR+GIFA+AG GK+  + M+   ++ADV VI LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  203  REFIEHDLGPEGVARSVIIVSTSDQAAQLRLNAAYVGTAIAEYFRDQGKTVILMMDSVTR  262
             EF++   +++   + V++ +TSD ++  R NAA ++T++AEYFRDQGK V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  263  FARALREIGLAAGEPPARAGYTPSVFATLPKLLERSGNSDKGSITAFYTILVAGDDMNEP  322
            +ARALR+++LA+GE PAR GY +SVF  LP+LLER+G +  GSITAFYT+L+ +++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  323  VADEVRSILDGHIILSSELARQYHYPAIDILSSASRILPNVTSEEHRKLIGQIREVLANY  382
            +ADE+RSILDGH+ LS  LA Q HYPAID+L S SR++ +VT+  H    + +R +++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  383  KKNELLIRIGEYKPGSDKQADFAIKYVDKVNRFLKQKVDEKCTFQETLEQLQAL  436
               +L+I +GEY+PG + + D A++  D ++  L Q V +  +F++TL  ++A+
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

286) NT01CX_1905 in NC_008593


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (976),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 171/409 (42%), Positives = 275/409 (68%), Gaps = 5/409 (1%)

Query  27   KQVIGLTIEVEGIKAFVGEVCTI---YNKENEPIMCEVVGFKEDNVILMPLGELIGIGPG  83
            +++ G  IE E     +GE+C I    ++ +     +VVG++ +  +L  +G+  G++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  84   CKVVPSKKYLSVKCSDDLLGKVLNGLGKPLK--SEEELPIGVDYPLDTAPPDPLKRRRIK  141
              + P+ + LS   +  +LG VL+  GK +   + E  PI+ +  +D APP    R  ++
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  142  DEIATGVRAVDGFLTCGEGQRIGIFAGSGVGKSTTLGMIAREAKADINVIALIGERGREV  201
            + + TGVRA+DG+LTCG GQR+GIFA++G GK+  + M+  ++ AD+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  LDFIEKDLGEEGLKKSVIVCATSDQPALVRLKGAFTATAIAEYFRDKGKKVILMMDSVTR  261
             +F++   + +   K V+V ATSD P++ R ++A  AT++AEYFRD+GK+V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  FAMAQREVGLAIGEPPATKGYTPSVFAMLPRLMERSGMSDKGSITAFYTVLVDGDDFNEP  321
            +A A R+V+LA GE PA +GY +SVF  LPRL+ER+G +  GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLSRALAGKNHYPAIDILNSVSRLMSEIATDEHKKAASLARDLLATY  381
            +AD +R+ILDGH+ LSR LAG+ HYPAID+L+SVSR+ ++++T  H   AS  R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KNSEDLINIGAYVRGSNPKVDMAIQYNDELNDYLRQGIKEHSEFQESVT  430
             + + +I++G Y  G N   D A+Q  D L+  L Q + + S F+++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

287) H045_00170 in NC_020209


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (976),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 175/420 (42%), Positives = 290/420 (70%), Gaps = 6/420 (1%)

Query  33   QRVNGMLLQCRLPNARIGDLCQVEKSVDDHML---AEIIGFDQQDAVLSALGNLEGVRVG  89
            Q++ G +++  L +  IG+LC++ ++ ++  +   A+++G++++ +VLS +GN +G+  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  90   ASVQRLGVSHRVLVGDELLGQVLDGFGRPISGVGPSAFVEVDSPDASMVLCEAPLPTERP  149
              +   G +    VG  +LG VLD  G+ +    P        ++  ++   +P  + R 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEV---APISEERVIDVAPPSYASRV  130

Query  150  RIHRALATGVRSIDGLLTLGEGQRVGLFAGAGCGKTTLLAEIARNVECDVIVFGLIGERG  209
             ++ +L TGVR+IDGLLT G GQR+G+FA+AGCGKT L+  +  + E DV+V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  210  RELREFLDHELDDQLRAKAVLVCATSDRSSMEraraaftatalaEGYRRKGKRVLLLIDS  269
            RE+ EF+D     + + K VLV ATSD +S++R  AA  AT++AE +R +GKRV+L+IDS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  270  LTRFARAQREIGLAAGEPLGRGGLPPSVYSLLPRLVERAGLTQNGVITAIYTVLIEQDSM  329
            +TR+ARA R+++LA+GE  +R G P+SV+  LPRL+ER+G T +G ITA+YTVL+E +  
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  330  SDPVADEVRSLLDGHIVLSRKLAERGHYPAVDVLASLSRILSNVATPEHIQAGTALRRLL  389
            +DP+ADE+RS+LDGH+ LSRKLA +GHYPA+DVL S+SR++++V+TP H + ++A+R+L+
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  390  SAYQQIELMLKLGEYQPGSDALTDMAVDTRSRVDGFLRQDLREPALMDSTLDQLTELTAH  449
            +  ++++L + LGEY+PG +   D A++ R  + + L Q + + +  D TL  +  ++ +
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQ  430

288) Sgly_0598 in NC_015172


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (976),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 175/426 (42%), Positives = 284/426 (67%), Gaps = 14/426 (3%)

Query  20   LGLVSKVTGLLIEANGPKVSVGRYCCIVSSKSE----IPAEVVGFKDNKTLLMPLGELEG  75
            L+   K+TG +IEA+   V++G  C I  +  +      A+VVG++ ++T+L  +G+ +G
Sbjct  10   LAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQG  69

Query  76   VSPGDKVIPQKEKLAVKVGSELLGRVLDGLGNPLEGRPLKSNIDYPLQN------APPHA  129
            +S +  + P    L+  VG  +LG VLD  G+ +E   + +++  P+ +      APP  
Sbjct  70   LSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVA-PISEERVIDVAPPSY  126

Query  130  LLRPRVSEPLSVGVRSVDGLLTIGRGQRMGIFAGSGVGKSTLLGMMARNTQADINVIALV  189
              R  V EPL  GVR++DGLLT G GQRMGIFA++G GK+ L+ M+  +T+AD+ VI+L+
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  190  GERGRELREFIEKDLGPEGISRSVIVVATSDQPALVRIKAAFTATAIAEYFRDTGKNVLL  249
            GERGRE+ EF++   +++   + V+V ATSD P++ R +AA  AT++AEYFRD GK V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  250  MMDSVTRFAMAQREVGLTIGEPPATRGYPPSVFAMLPKLLERAGMAEKGSITGLYTVLVD  309
             +DS+TR+A A R+V+L+ GE PA RGYP+SVF  LP+LLER+G +  GSIT++YTVL++
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  310  GDDHNEPIADAVRGILDGHIVLSRDLAARNHFPSIDILQSVSRCMSDVAEPEMIGLAGKV  369
            ++++ +P+AD +R+ILDGH+ LSR LA++ H+P+ID+L+SVSR  ++V+ P     A+ V
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  370  RELLAVYQGAKDLIDIGAYVRGSNAKIDTALKYMEKITLFLCQSTDEKFNGIDMVAEIKK  429
            R L++  +  + +ID+G Y  G N   D A++  + +   LCQ+  + ++++D      +
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ-YSSFDDTLSGMN  425

Query  430  IFTEEG  435
             F+++ 
Sbjct  426  AFADQN  431

289) fliI in NC_019954


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (976),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 170/420 (41%), Positives = 284/420 (68%), Gaps = 9/420 (2%)

Query  28   KIVGLTIESEGPPAELGEICIIKSPKNPKSIFS--EVVGFRDEIVILMPLGDMEDLGPGW  85
            KI G  IE+E     +GE+C I+   + K + +  +VVG++ E  +L  +G+ ++L+ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  86   DVEATGKKMTTPVGDELLGRVLDGLGNPID----DKGPLKAKLHYPVSNNPPNPVERPII  141
             + +TG+ +++ VG  +LG VLD  G+ ++    + +P+       +   PP+   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGV  132

Query  142  SEPLPVGVRAIDALLTCGIGQRLGIFAGSGVGKSTLLGMIARNTKADVNVIALVGERGRE  201
             EPL  GVRAID+LLTCG+GQR+GIFA++G GK+ L+ M+  +T ADV VI+L+GERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  202  LNSFITKDLGEEGVKRSVIVVATSDKPPLVrtraaftataiaEYFRDQGANVLLMMDSIT  261
            +  F+    + +   + V+V ATSD P++ R  AA  AT++AEYFRDQG  V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  262  RFAMAQREVGLAAGEPPVTRGYTPSVYATLPKLLERAGTSAKGSITGIYTVLVDGDDLNE  321
            R+A A R+V+LA+GE P  RGY +SV+  LP+LLER+G+++ GSIT++YTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  322  PISDAVRGILDGHIVLSRELANKNHYPAIDVMASISRLMNDIVTPNHRKLAGRVKNILSV  381
            P++D +R+ILDGH+ LSR LA + HYPAIDV+ S+SR+  ++ TP H   A+ V+++++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  382  YKEAEDLINIGAYVKGNNPQIDESIKYIDKIENFLKQEVEEKINFEQTINALERIFEDEE  441
              E + +I++G Y  G+N + D +++  D +   L Q V +  +F++T+++++  F D++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN-AFADQN  431

290) TepRe1_1222 in NC_015519


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (976),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 170/420 (41%), Positives = 284/420 (68%), Gaps = 9/420 (2%)

Query  28   KIVGLTIESEGPPAELGEICIIKSPKNPKSIFS--EVVGFRDEIVILMPLGDMEDLGPGW  85
            KI G  IE+E     +GE+C I+   + K + +  +VVG++ E  +L  +G+ ++L+ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  86   DVEATGKKMTTPVGDELLGRVLDGLGNPID----DKGPLKAKLHYPVSNNPPNPVERPII  141
             + +TG+ +++ VG  +LG VLD  G+ ++    + +P+       +   PP+   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGV  132

Query  142  SEPLPVGVRAIDALLTCGIGQRLGIFAGSGVGKSTLLGMIARNTKADVNVIALVGERGRE  201
             EPL  GVRAID+LLTCG+GQR+GIFA++G GK+ L+ M+  +T ADV VI+L+GERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  202  LNSFITKDLGEEGVKRSVIVVATSDKPPLVrtraaftataiaEYFRDQGANVLLMMDSIT  261
            +  F+    + +   + V+V ATSD P++ R  AA  AT++AEYFRDQG  V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  262  RFAMAQREVGLAAGEPPVTRGYTPSVYATLPKLLERAGTSAKGSITGIYTVLVDGDDLNE  321
            R+A A R+V+LA+GE P  RGY +SV+  LP+LLER+G+++ GSIT++YTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  322  PISDAVRGILDGHIVLSRELANKNHYPAIDVMASISRLMNDIVTPNHRKLAGRVKNILSV  381
            P++D +R+ILDGH+ LSR LA + HYPAIDV+ S+SR+  ++ TP H   A+ V+++++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  382  YKEAEDLINIGAYVKGNNPQIDESIKYIDKIENFLKQEVEEKINFEQTINALERIFEDEE  441
              E + +I++G Y  G+N + D +++  D +   L Q V +  +F++T+++++  F D++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN-AFADQN  431

291) hscN in NC_014366


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (975),  Expect = 8e-71, Method: Compositional matrix adjust.
 Identities = 174/394 (45%), Positives = 276/394 (71%), Gaps = 7/394 (1%)

Query  38   IGDICRLRDPANGNELLA--EAVGIKHHITLLNPLGTMEGVSNTMLVEVIEGASTVPVGR  95
            IG++C +R   + ++++A  + VG++++ T+L+ +G  +G+S  +++     A +  VG 
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY  89

Query  96   ELLGRVLDSQGLPLD---GKPPPNCAHRAAIYAAAPDPMKRLPVDKAFSTGVQAIDSMLT  152
             +LG VLD+ G  ++      +P   +R  I  A+P    R+ V  ++ TGV+AID++LT
Sbjct  90   SVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  153  LGLGQRAGIFAMAGGGKSTLLGMLARGSESDVNVVVLIGERGREVREFIDESLGAEGLAK  212
             G+GQR GIFA AG GK+ L+ ML   +E+DV V+ LIGERGREV EF+D   +++   K
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  213  SVVLVSTSDRPALERCRVALVGTAIAEYFRDKGLRVLLMMDSVTRYARALRDIGLALGEP  272
             V++ +TSD P+++RC  A ++T++AEYFRD+G RV+L +DS+TRYARALRD++LA GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  273  PVRRGFTPSVFSQLPRLFERAGNNEKGYITGIYTVLAEDEHDGEDPVTEEVRSLLDGHIV  332
            P RRG+ +SVF +LPRL+ER+G    G IT++YTVL E E+++ DP+++E+RS+LDGH+ 
Sbjct  269  PARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA-DPMADEIRSILDGHLY  327

Query  333  LSRKLAAAAHYPAIDVLASASRVMHNVTTPEHRQKAARVRALMSKYKEVELLLQVGEYKK  392
            LSRKLA+ +HYPAIDVL S SRV  +VTTP H ++A+ VR LM++  E++L++++GEY+ 
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  393  GTDGQADDAIRAAPMIGGLLKQDSTVVTPYARTL  426
            G + + D A++    + + L Q  +  +++  TL
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

292) ssaN in NC_012751


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (974),  Expect = 8e-71, Method: Compositional matrix adjust.
 Identities = 168/388 (44%), Positives = 276/388 (72%), Gaps = 25/388 (6%)

Query  44   TLIKVSLPGVRMGELCRI----EPNRILA--EVVSIEQKTALLSPFSSCDGL------YA  91
             +I   L +V +GELC I    + ++++A  +VV++++  ++LS +++ +GL      Y+
Sbjct  19   PIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYP  78

Query  92   -----GQWVSPLKYSHQVPVSMSLMGRILNGLGHPIDDGPGLGYHWRSLDNAPPDPLKRK  146
                 + WV+   YS   +V +   G+I++ +   +   +      R +D APP    R 
Sbjct  79   TGRALSAWVG---YSVLGAV-LDPTGKIVERFTPEVAPISEE----RVIDVAPPSYASRV  130

Query  147  PITDQLVTGIRSLDAILSCGEGQRIGIFAAAGVGKSTLLGMLCDGSDADVMVLALIGERG  206
             + + L+TG+R++D++L+CG GQR+GIFA+AG GK+ L+ ML + ++ADV V++LIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVREFLEQVLTPKARQRTVVVVATSDRPALERLKGIYTATTIAEYFRDCGKKVVLMVDS  266
            REV EF++ + ++  +++ V+V ATSD P+++R ++   ATT+AEYFRD GK+VVL +DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRYARAAREIGLAAGEPPAAGSFPPSVFAQMPRLLERTGNSDLGSITAFYTVLVEGDDM  326
            +TRYARA R+++LA+GE PA  ++P+SVF ++PRLLER G +  GSITAFYTVL+E+++ 
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  327  NEPVADEVRSLLDGHIILSRKLAGAGHYPAIDIAASVSRIMPQIASSWHLEMAQKLRFIL  386
             +P+ADE+RS+LDGH+ LSRKLAG GHYPAID+  SVSR+  Q++++ H E A  +R ++
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  387  ARYEEIELLVRVGEYQKGQDLEADDALK  414
            +R EE++L++ +GEY+ G++++ D A++
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQ  398

293) sctN in NC_014718


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (974),  Expect = 9e-71, Method: Compositional matrix adjust.
 Identities = 182/405 (45%), Positives = 290/405 (72%), Gaps = 4/405 (0%)

Query  49   VIGTLVKVGGLDVTLGELCELRAA--DGSLLQHAEVIGFTRDVALLSPFSRLESISRSTR  106
            + G ++     DV++GELCE+R +  +  ++ +A+V+G+ R+ ++LS ++  +++SR   
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  107  VIGLGRPLSVPVGEGLLGRVIDSLGQPIDGFGP--IDANEERPIFADSPDPMSRRMIEYP  164
            +   GR+LS  VG ++LG V+D+ G+ ++ F P     +EER I   +P   SR  +  P
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  165  LATGVRVVDSMMTLAEGQRMGIFAPAGVGKSTLLGMFARGAQCDVTVIALIgergrevre  224
            L TGVR +D+++T + GQRMGIFA+AG GK+ L+ M+   ++ DV VI+LIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  225  fveLILGKEGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGQRVLLMMDSLTRFA  284
            FV+++ + +   + V+V ATSD +S++R +AA +AT++AEYFRD+G+RV+L +DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  285  RAQREIGLAAGEPPARRGFPPSIFAELPRLLERAGMGATGSITALYTVLAEDESGSDPIA  344
            RA R+++LA+GE PARRG+P+S+F +LPRLLER+G  + GSITA+YTVL E E  +DP+A
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  345  EEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMSQVMPREYVDAAARVRELLAKHRE  404
            +E+R+ILDGH+ LSR +A++ +YPAIDVL S+SRV +QV      + A+ VR L+++  E
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  405  VEMLLQIGEYQPGGNPLADEAIAKIDAIRDFLGQRTDEWADPDDT  449
            +++++++GEY+PG N   D A+   D+++  L Q   + +  DDT
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

294) Cthe_0468 in NC_009012


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (974),  Expect = 9e-71, Method: Compositional matrix adjust.
 Identities = 171/424 (41%), Positives = 285/424 (68%), Gaps = 11/424 (2%)

Query  17   DFIEYTGKVSKVVGLTIESNGPEVNIGEICKINALRENK--VISAEAVGFRDNKVLLMPL  74
            +++ Y  K++   G  IE++  +V IGE+C I   +++K  V  A+ VG++ ++ +L  +
Sbjct  8    QYLAYPQKIT---GPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLI  64

Query  75   GDMNGIGPGSKVVATRDYLSVGVGNALIGRVIDGMGRPID---GKGEIVTETTYPVENKP  131
            G+ +G++ +  + +T   LS  VG +++G V+D  G+ ++        ++E    ++  P
Sbjct  65   GNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER-VIDVAP  123

Query  132  PHPLKRNRIKEPLPLGVKTIDGLLTVGKGQRVGIFAGSGVGKSTLIGMIARNTKADVNVI  191
            P    R  ++EPL  GV++IDGLLT G GQR+GIFA++G GK+ L+ M+  +T ADV VI
Sbjct  124  PSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVI  183

Query  192  ALIGERGREVREFIEKDLKEEGLK-RSVVVVATSDQPALIRLKGALMATAIAEYFRDQGK  250
            +LIGERGREV EF++  L+    K + V+V ATSD P++ R ++A +AT++AEYFRDQGK
Sbjct  184  GLIGERGREVTEFVDM-LRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGK  242

Query  251  DVLLLMDSLTRFAMAQREIGLSIGEPPVSRGYTPSVFSIMPKLLERAGNSQSGSITGLYT  310
             V+L++DS+TR+A A R+++L+ GE P  RGY +SVF  +P+LLER+G +  GSIT++YT
Sbjct  243  RVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYT  302

Query  311  VLVDGDDLTEPVTDTARGILDGHIVLSRNLANKNQYPAIDVLASVSRVMPDIVDDEHQKI  370
            VL+++++ ++P++D  R+ILDGH+ LSR+LA + +YPAIDVL SVSRV  ++    H   
Sbjct  303  VLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQ  362

Query  371  ANDIKKTMAIYREAEDLINVGAYAKGSNEKIDYAIEVIDKIQEFIKQGVHERYSYEETIN  430
            A+ ++K M+   E + +I++G Y  G N   D A+++ D ++  + Q V +  S+++T++
Sbjct  363  ASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

Query  431  LMKN  434
             M+ 
Sbjct  423  GMNA  426

295) Clo1313_1752 in NC_017304


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  261 bits (974),  Expect = 9e-71, Method: Compositional matrix adjust.
 Identities = 171/424 (41%), Positives = 285/424 (68%), Gaps = 11/424 (2%)

Query  17   DFIEYTGKVSKVVGLTIESNGPEVNIGEICKINALRENK--VISAEAVGFRDNKVLLMPL  74
            +++ Y  K++   G  IE++  +V IGE+C I   +++K  V  A+ VG++ ++ +L  +
Sbjct  8    QYLAYPQKIT---GPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLI  64

Query  75   GDMNGIGPGSKVVATRDYLSVGVGNALIGRVIDGMGRPID---GKGEIVTETTYPVENKP  131
            G+ +G++ +  + +T   LS  VG +++G V+D  G+ ++        ++E    ++  P
Sbjct  65   GNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER-VIDVAP  123

Query  132  PHPLKRNRIKEPLPLGVKTIDGLLTVGKGQRVGIFAGSGVGKSTLIGMIARNTKADVNVI  191
            P    R  ++EPL  GV++IDGLLT G GQR+GIFA++G GK+ L+ M+  +T ADV VI
Sbjct  124  PSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVI  183

Query  192  ALIGERGREVREFIEKDLKEEGLK-RSVVVVATSDQPALIRLKGALMATAIAEYFRDQGK  250
            +LIGERGREV EF++  L+    K + V+V ATSD P++ R ++A +AT++AEYFRDQGK
Sbjct  184  GLIGERGREVTEFVDM-LRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGK  242

Query  251  DVLLLMDSLTRFAMAQREIGLSIGEPPVSRGYTPSVFSIMPKLLERAGNSQSGSITGLYT  310
             V+L++DS+TR+A A R+++L+ GE P  RGY +SVF  +P+LLER+G +  GSIT++YT
Sbjct  243  RVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYT  302

Query  311  VLVDGDDLTEPVTDTARGILDGHIVLSRNLANKNQYPAIDVLASVSRVMPDIVDDEHQKI  370
            VL+++++ ++P++D  R+ILDGH+ LSR+LA + +YPAIDVL SVSRV  ++    H   
Sbjct  303  VLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQ  362

Query  371  ANDIKKTMAIYREAEDLINVGAYAKGSNEKIDYAIEVIDKIQEFIKQGVHERYSYEETIN  430
            A+ ++K M+   E + +I++G Y  G N   D A+++ D ++  + Q V +  S+++T++
Sbjct  363  ASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

Query  431  LMKN  434
             M+ 
Sbjct  423  GMNA  426

296) BURPS668_A2288 in NC_009075


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  260 bits (972),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 184/403 (46%), Positives = 288/403 (72%), Gaps = 6/403 (1%)

Query  44   EATLGELCELRGAS--GALIQHAEVVGFTRNVALLSPFGTLGEINRGTRVIGLRRPLSVK  101
            + ++GELCE+R +     ++ +A+VVG+ R+ ++LS +G    ++R+  +    R+LS  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  102  VGNGILGRVIDSFGEPIDGRGELDYDAL---RPVIAAPPNPMSRRMVDASLATGVRIVDG  158
            VG ++LG V+D+ G  ++ R   +  ++   R +  APP+  SR  V  +L TGVR +DG
Sbjct  87   VGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  159  LITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIgergrevrefveLIMGEDG  218
            L+T G GQRMGIFA+AG GK+ L+ M+   +  DV VI+LIGERGREV EFV+++ + + 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  219  MARSVVVCATSDRSSIERakaayaataiaEYFRDQGKRVLLMMDSLTRFARAGREIGLAA  278
              + V+V ATSD +S++R +AA  AT++AEYFRDQGKRV+L +DS+TR+ARA R+++LA+
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  279  GEPPARRGFPPSVFAELPRLLERTGMGEQGSITALYTVLAEDDSGSDPIAEEVRGILDGH  338
            GE PARRG+P+SVF +LPRLLER G   +GSITA+YTVL E +  +DP+A+E+R+ILDGH
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  339  IILSREIAARNQYPAIDVLGSLSRIMPQIATREHVGAAGRLRQLLAKHREIETLLQLGEY  398
            + LSR +A++ +YPAIDVL S+SR+  Q++T  H   A+ +R+L+++  E++ +++LGEY
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  399  QAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATLAALHELA  441
            ++G +   D A+   D ++A L Q   +YS+ D TL++++ +A
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFA  428

297) YPK_3906 in NC_010465


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  260 bits (971),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 175/393 (45%), Positives = 283/393 (73%), Gaps = 11/393 (2%)

Query  27   LRYRGPIVEIGPTLLRASLPNVAQGELCRI----EPQGMLA--EVVSIEQEMALLSPFAS  80
            L+Y +    I   ++ A L +VA GELC I    + + ++A  +VV++++E ++LS +++
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  81   SDGLRCGQWVTPLGHMHRVQVGADLAGRILDGLGAPID----GGPPLTGQWRELDCPPPS  136
            ++GL  +  + P G+     VG  + G +LD  G  ++      +P++ + R +D +PPS
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPS  125

Query  137  PLTRQPVEQMLTTGGRAIDGILSCGEGQRIGIFAAAGVGKSTLLSMLCADSAADVMVLAL  196
              +R  V + L TG RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML  ++ ADV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  197  IGERGREVREFLEQVLTPEarartvvvvatSDRPALERLKGLSTATTVAEYFRERGLKVL  256
            IGERGREV EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  257  LLADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSITAFYTVLV  316
            L+ DS+TRYARA R+++LA+GE PA  ++P+SVF NLPRLLER G +  GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  317  EGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQK  376
            E+++  +P+ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ +   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  377  LRRMLACYQEIELLVQIGEYQAGEDLQADEALQ  409
            +R++++  +E++L++++GEY++GE+++ D A+Q
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

298) Bsel_1744 in NC_014219


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  260 bits (972),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 165/411 (41%), Positives = 277/411 (68%), Gaps = 6/411 (1%)

Query  24   QVVGLMIESRGPQASVGELCLIHISRTQRKILA--EVVGFREEKVLLMPFDRISDIAAGS  81
            ++ G +IE+   + ++GELC I+ ++ Q++++A  +VVG++ E+ +L  ++   +++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  82   LVETMGRPLEVKVGRDMIGTVVDGLGR---HFLDGGERIGNQYYSTDNEPPNPMTRPRIS  138
            ++   GR+L   VG  ++G+V+D  G+   +F      I+++    D  PP+  +R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER-VIDVAPPSYASRVGVR  133

Query  139  EPLGLGVKAIDGLFTVGKGQRMGIFAGSGVGKSTLMAMITKSSEADINVIALIGERGREV  198
            EPL  GV+AIDGL+T G GQRMGIFA++G GK+ LM M+   +EAD+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  199  RDFIERDLGEEGMKNTIVVVATSDQPPLMRIKGAMTATAISEYFRDLGYDVNLMMDSVTR  258
             +F++   + +   + ++V ATSD P++ R ++A  AT+++EYFRD G  V L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  259  VAMAQREIGLAIGEPPTTKGYTPSVFALLPRLLERSGMSQSGSITAFYTVLVDGDDMNEP  318
             A A R+++LA GE P+ +GY +SVF  LPRLLER+G +  GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  319  VADSVRGILDGHLVLDRKLANKGHFPAINPLSSISRIMNELVDDRHRQAADKVRQIISTY  378
            +AD +R+ILDGHL L RKLA +GH+PAI+ L S+SR+  ++    H + A  VR++++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  379  QESEDLINIGAYKKGSNPEVDEAIKRFPEVNEFLVQEVHEAFSYDEIMNQL  429
            +E + +I++G Y+ G N + D A++    ++  L Q V +  S+D+ ++ +
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

299) fliI in NC_015577


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  260 bits (972),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 170/415 (41%), Positives = 279/415 (68%), Gaps = 4/415 (0%)

Query  45   KVQGLLIESRGPQAIIGEIC--RIEAPKGAGLIRAEVVGLRGDTVQLMAYDETDGLEIGA  102
            K+ G +IE+   +  IGE+C  R    +   + RA+VVGL+ +   L   ++++GL  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  103  RVVASGTRLEVAVSNKLLGRVLDPLGHPVDGKGNIESPVHYPALAN--PPDPLKRRRITE  160
             + ++G  L   V+  +LG VLDP G  V+      +P+    + +  PP    R  + E
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  161  RISTGVRAIDGMLAVGRGQRLGIFAGTGVGKSTLLGMIARNTNADVNVIALIGERGREVN  220
             + TGVRAIDG+L+ G GQR+GIFA++G GK+ L+ M+  +T+ADV VI+LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  221  DFIENDLGPNGLARSVIVVTPSNSPPLARLRGAYTATAVAEYFRDQGLDVMLLFDSVTRF  280
            +F++   +++   + V+V + S+ P++ R  +A  AT+VAEYFRDQG  V+L++DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  281  ARAQREIGLATGEPPATRGFPPSMFDSMPKLLERCGTSDRGTITGFYTILVDGDDMDEPV  340
            ARA R+++LA+GE PA RG+P+S+FD++P+LLER G++  G+IT+FYT+L+++++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  341  ADTVRGILDGHIVLSRSLAQRYHYPAIDILNSISRLSTAVSGSETKKAVGIIRRLMADYA  400
            AD +R+ILDGH+ LSR LA + HYPAID+L+S+SR+   V+ +      + +R+LM+   
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  401  DSEDLINVGAYKQGSNPKIDEAIAKRDALENFFIQNVDDKSSIVDTLNALGKIAG  455
            + + +I++G Y+ G N   D A+  RD+L   + Q V + SS+ DTL+++  +A+
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

300) Clocl_1964 in NC_016627


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  260 bits (971),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 173/431 (41%), Positives = 290/431 (68%), Gaps = 8/431 (1%)

Query  13   LAKSDFIEYKGKVSKIIGLTIESNGPEVNMGEICLIQSLRDKYEI--KAEVVGFRENKVI  70
            +  + +++Y +   KI G  IE++  +V +GE+C I+  +++ ++  +A+VVG++ ++ +
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  71   LMPLGDMAGIGPGSSVVATGEYLSAAVGEKLIGRIIDGLGNPID----EKGEIETEGFYP  126
            L  +G+  G++ +  + +TG  LSA VG  ++G ++D  G+ ++    E + I  E    
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--V  118

Query  127  VNNDPPHPLMRNRISEPLPLGIKTIDGLLTIGKGQRVGIFAGSGVGKSTLIGMIARNTKA  186
            ++  PP    R  + EPL  G+++IDGLLT G GQR+GIFA++G GK+ L+ M+  +T A
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  187  DINVIALIGERGREVREFIEKDLKEEGLSRSVVIVATSDQPALVRLKAAFMATAVAEYFR  246
            D+ VI+LIGERGREV EF++     +   + V++ ATSD P++ R +AA +AT+VAEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  247  DQGKDVLLLMDSLTRFAMAQREIGLAVGEPPVSRGYTPSVFSIMPKLLERAGNSERGSIT  306
            DQGK V+L++DS+TR+A A R+++LA GE P  RGY +SVF  +P+LLER+G +  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  307  GLYTVLVDGDDLTEPVTDTARGILDGHIVLSRALANRNQYPAIDVLASVSRVMSDIIDDR  366
            ++YTVL+++++ ++P++D  R+ILDGH+ LSR LA + +YPAIDVL SVSRV +++    
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  367  HKEIANKIKKLMAIYRDAEDLINIGAYVKGSNEKIDLAIEYNDKILEFIEQGTHEKYSFN  426
            H E A+ ++KLM+   + + +I++G Y  G N   D A++  D +   + Q   +  SF+
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  427  EVIGMLESFAD  437
            + ++ +++FAD
Sbjct  419  DTLSGMNAFAD  429

301) Ccel_2048 in NC_011898


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  259 bits (969),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 173/421 (42%), Positives = 281/421 (67%), Gaps = 9/421 (2%)

Query  13   LKSKEYIDYIGKVSKVVGLTIESDGPQVSIGDLCNIHIIGGSKL---KAEVVGFKDEKVL  69
            +K+   ++Y++   K+ G  IE++  +V+IG+LC+I+     K    +A+VVG++ E+ +
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTV  60

Query  70   LMPLGEMTGIGPGSTVSANGDILKVAVGPQLVGRVLDGLGNPID----DKGSLQSKHYYK  125
            L  +G+  G++ +  + + G  L   VG  ++G VLD  G+ ++    + +++   +   
Sbjct  61   LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--V  118

Query  126  TDNKPPNPLTRKRISEPLPLGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMVARNTKA  185
             D  PP+  +R  + EPL  GVRAIDGLLT G GQR+GIFA++G GK+ LM M+  +T A
Sbjct  119  IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEA  178

Query  186  DINVIALIGERGREVREFLERDLTDEGLARSVVVVATSDQPALIRLKGAMVATAIAEYFR  245
            D+ VI+LIGERGREV EF++   + +   + V+V ATSD P++ R ++A +AT++AEYFR
Sbjct  179  DVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFR  238

Query  246  DCGKDVLLLMDSLTRYAMAQREVGLSIGEPPVSRGYTPSVFSVFPKLLERAGTSDKGSIT  305
            D GK V+L++DS+TRYA A R+V+L+ GE P  RGY +SVF  +P+LLER+G++  GSIT
Sbjct  239  DQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSIT  298

Query  306  GLYTVLVDGDDLTEPVTDTARGILDGHIVLSRSMANKNHYPAIDVLASVSRVMGDIIDKE  365
            ++YTVL+++++ ++P++D  R+ILDGH+ LSR +A + HYPAIDVL SVSRV G++    
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  366  HKKSANEIKKVMAVHRDSEDLINIGAYVKGSNEKIDYAIECIEDITSFLQQETDEKVSFE  425
            H   A+ ++K+M+   + + +I++G Y  G N   D A++  + + + L Q   +  SF+
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

Query  426  D  426
            D
Sbjct  419  D  419

302) Rmar_0787 in NC_013501


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  259 bits (968),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 169/409 (42%), Positives = 282/409 (69%), Gaps = 3/409 (0%)

Query  24   RPLHF-GKVQSVVGLLIEASELPAAVGELCYIHEGQEPGARRIKAEVVGLRGNTTILMPL  82
            R L++ +  Q + G +IEA     A+GELC I+ G +      +A+VVGL+ + T+L  +
Sbjct  5    RLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLI  64

Query  83   EETRGLRAGYLVEPSALPLTIRVGEAMLGRVVDANARPIDGKGP-LTVTDEQPVRNDPPP  141
             +++GL  + ++ P++ +L+ +VG ++LG V+D+ ++ ++   P ++   E+ V + +PP
Sbjct  65   GNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPP  124

Query  142  PLSRRM-IDTPLFTGIRAIDTFLTLGRGQRIGIFAGSGVGKSTLLGMIARRARADVNVIA  200
            + + R+ +  PL+TG+RAID +LT G GQR+GIFA++G GK+ L+ M+  ++ ADV VI+
Sbjct  125  SYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIG  184

Query  201  LIGERGREVQEFIADNLGPEGLKRSVVVAVTGDQAAMSRVKGASVAMAIAEYFRDRGLDV  260
            LIGERGREV EF+    +++   + V+V  T+D +++ R ++A +A ++AEYFRD+G  V
Sbjct  185  LIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRV  244

Query  261  LLMMDSITRVAMAQREIGLAVGEPPTTRGYTPSVFAMLPRLLERAGPGARGTITGIFTVL  320
            +L +DS+TR A A R+++LA GE P+ RGY +SVF  LPRLLER+G+ + G+IT+++TVL
Sbjct  245  VLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVL  304

Query  321  VDADDMNDPIGDAVRGILDGHIVLSRRLAHANHFPAIDVLQSVSRVMPRVTTAEHRALVE  380
            +++++  DP++D +R+ILDGH+ LSR+LA   H+PAIDVL+SVSRV  +VTT+ H     
Sbjct  305  LESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQAS  364

Query  381  EARRLLATYQEAEDLIRVGAYEMGTRPEIDRAILAHEALMAFLRQGVDE  429
              R+L++  +E + +I +G Y  G   + DRA+  +++L A L Q V +
Sbjct  365  AVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

303) escN in NC_013716


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  259 bits (966),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/345 (47%), Positives = 248/345 (72%), Gaps = 2/345 (0%)

Query  99   GEEFKIRVGDELLGRLVDGIGRPMGSNIATLY-LPFKRSLYAEPPDPLLRQVIDQPFTLG  157
            G  +  +VG  +LG ++D  G+ +    + +  ++  R +   PP    R  + +P+  G
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITG  139

Query  158  VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL  217
            VRAIDGLLTCG+GQR+GIFA++G GK+ L+ M+ + + AD++V++LIGERGREV EF+ +
Sbjct  140  VRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDM  199

Query  218  LPQS-TLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAAR  276
            L  S    KCVLV +TSD P+++R +AA  ATT+AEYFRDQGK V+L +DS+TRYARA R
Sbjct  200  LRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALR  259

Query  277  DVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVR  336
            DV+LASGE   R G+P+SVF +LP+LLER+G+++ GSITA+YTVLLES++  DP++DE+R
Sbjct  260  DVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIR  319

Query  337  SILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVKSEHLRAAAECKKLIATYKNIELL  396
            SILDGH+ L+R LA + H+PAID+  S SRV  +V  + H   A+  +KL++   +++L+
Sbjct  320  SILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLF  379

Query  397  IRIGEYTMGQDPEADKAIKNRKAIQSFLQQSTKDISSYEKTIENL  441
            I +GEY  G++ + D+A++ R ++++ L Q+  + SS++ T+  +
Sbjct  380  IDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

304) sctN in NC_008835


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  259 bits (968),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 184/402 (46%), Positives = 287/402 (72%), Gaps = 6/402 (1%)

Query  44   EATLGELCELRGAS--GALIQHAEVVGFTRNVALLSPFGTLGEINRGTRVIGLRRPLSVK  101
            + ++GELCE+R +     ++ +A+VVG+ R+ ++LS +G    ++R+  +    R+LS  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  102  VGNGILGRVIDSFGEPIDGRGELDYDAL---RPVIAAPPNPMSRRMVDASLATGVRIVDG  158
            VG ++LG V+D+ G  ++ R   +  ++   R +  APP+  SR  V  +L TGVR +DG
Sbjct  87   VGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  159  LITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIgergrevrefveLIMGEDG  218
            L+T G GQRMGIFA+AG GK+ L+ M+   +  DV VI+LIGERGREV EFV+++ + + 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  219  MARSVVVCATSDRSSIERakaayaataiaEYFRDQGKRVLLMMDSLTRFARAGREIGLAA  278
              + V+V ATSD +S++R +AA  AT++AEYFRDQGKRV+L +DS+TR+ARA R+++LA+
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  279  GEPPARRGFPPSVFAELPRLLERTGMGEHGSITALYTVLAEDDSGSDPIAEEVRGILDGH  338
            GE PARRG+P+SVF +LPRLLER G   +GSITA+YTVL E +  +DP+A+E+R+ILDGH
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  339  IILSREIAARNQYPAIDVLGSLSRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEY  398
            + LSR +A++ +YPAIDVL S+SR+  QV+T  H   A+ +R+L+++  E++ +++LGEY
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  399  QAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATLAALHEL  440
            ++G +   D A+   D ++A L Q   +YS+ D TL++++ +
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

305) sctN in NC_009079


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  259 bits (968),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 184/402 (46%), Positives = 287/402 (72%), Gaps = 6/402 (1%)

Query  44   EATLGELCELRGAS--GALIQHAEVVGFTRNVALLSPFGTLGEINRGTRVIGLRRPLSVK  101
            + ++GELCE+R +     ++ +A+VVG+ R+ ++LS +G    ++R+  +    R+LS  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  102  VGNGILGRVIDSFGEPIDGRGELDYDAL---RPVIAAPPNPMSRRMVDASLATGVRIVDG  158
            VG ++LG V+D+ G  ++ R   +  ++   R +  APP+  SR  V  +L TGVR +DG
Sbjct  87   VGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  159  LITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIgergrevrefveLIMGEDG  218
            L+T G GQRMGIFA+AG GK+ L+ M+   +  DV VI+LIGERGREV EFV+++ + + 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  219  MARSVVVCATSDRSSIERakaayaataiaEYFRDQGKRVLLMMDSLTRFARAGREIGLAA  278
              + V+V ATSD +S++R +AA  AT++AEYFRDQGKRV+L +DS+TR+ARA R+++LA+
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  279  GEPPARRGFPPSVFAELPRLLERTGMGEHGSITALYTVLAEDDSGSDPIAEEVRGILDGH  338
            GE PARRG+P+SVF +LPRLLER G   +GSITA+YTVL E +  +DP+A+E+R+ILDGH
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  339  IILSREIAARNQYPAIDVLGSLSRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEY  398
            + LSR +A++ +YPAIDVL S+SR+  QV+T  H   A+ +R+L+++  E++ +++LGEY
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  399  QAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATLAALHEL  440
            ++G +   D A+   D ++A L Q   +YS+ D TL++++ +
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

306) BURPS1106A_A2205 in NC_009078


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  259 bits (968),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 184/402 (46%), Positives = 287/402 (72%), Gaps = 6/402 (1%)

Query  44   EATLGELCELRGAS--GALIQHAEVVGFTRNVALLSPFGTLGEINRGTRVIGLRRPLSVK  101
            + ++GELCE+R +     ++ +A+VVG+ R+ ++LS +G    ++R+  +    R+LS  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  102  VGNGILGRVIDSFGEPIDGRGELDYDAL---RPVIAAPPNPMSRRMVDASLATGVRIVDG  158
            VG ++LG V+D+ G  ++ R   +  ++   R +  APP+  SR  V  +L TGVR +DG
Sbjct  87   VGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  159  LITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIgergrevrefveLIMGEDG  218
            L+T G GQRMGIFA+AG GK+ L+ M+   +  DV VI+LIGERGREV EFV+++ + + 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  219  MARSVVVCATSDRSSIERakaayaataiaEYFRDQGKRVLLMMDSLTRFARAGREIGLAA  278
              + V+V ATSD +S++R +AA  AT++AEYFRDQGKRV+L +DS+TR+ARA R+++LA+
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  279  GEPPARRGFPPSVFAELPRLLERTGMGEHGSITALYTVLAEDDSGSDPIAEEVRGILDGH  338
            GE PARRG+P+SVF +LPRLLER G   +GSITA+YTVL E +  +DP+A+E+R+ILDGH
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  339  IILSREIAARNQYPAIDVLGSLSRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEY  398
            + LSR +A++ +YPAIDVL S+SR+  QV+T  H   A+ +R+L+++  E++ +++LGEY
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  399  QAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATLAALHEL  440
            ++G +   D A+   D ++A L Q   +YS+ D TL++++ +
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

307) BURPS1710b_A0686 in NC_007435


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 185/403 (46%), Positives = 288/403 (72%), Gaps = 6/403 (1%)

Query  44   EATLGELCELRGAS--GALIQHAEVVGFTRNVALLSPFGTLGEINRGTRVIGLRRPLSVK  101
            + ++GELCE+R +     ++ +A+VVG+ R+ ++LS +G    ++R+  +    R+LS  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  102  VGNGILGRVIDSFGEPIDGRGELDYDAL---RPVLAAPPNPMSRRMVDASLATGVRIVDG  158
            VG ++LG V+D+ G  ++ R   +  ++   R +  APP+  SR  V  +L TGVR +DG
Sbjct  87   VGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  159  LITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIgergrevrefveLIMGEDG  218
            L+T G GQRMGIFA+AG GK+ L+ M+   +  DV VI+LIGERGREV EFV+++ + + 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  219  MARSVVVCATSDRSSIERakaayaataiaEYFRDQGKRVLLMMDSLTRFARAGREIGLAA  278
              + V+V ATSD +S++R +AA  AT++AEYFRDQGKRV+L +DS+TR+ARA R+++LA+
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  279  GEPPARRGFPPSVFAELPRLLERTGMGEHGSITALYTVLAEDDSGSDPIAEEVRGILDGH  338
            GE PARRG+P+SVF +LPRLLER G   +GSITA+YTVL E +  +DP+A+E+R+ILDGH
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  339  IILSREIAARNQYPAIDVLGSLSRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEY  398
            + LSR +A++ +YPAIDVL S+SR+  QV+T  H   A+ +R+L+++  E++ +++LGEY
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  399  QAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATLAALHELA  441
            ++G +   D A+   D ++A L Q   +YS+ D TL++++ +A
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFA  428

308) BPC006_II2184 in NC_018529


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  259 bits (968),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 184/402 (46%), Positives = 287/402 (72%), Gaps = 6/402 (1%)

Query  44   EATLGELCELRGAS--GALIQHAEVVGFTRNVALLSPFGTLGEINRGTRVIGLRRPLSVK  101
            + ++GELCE+R +     ++ +A+VVG+ R+ ++LS +G    ++R+  +    R+LS  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  102  VGNGILGRVIDSFGEPIDGRGELDYDAL---RPVIAAPPNPMSRRMVDASLATGVRIVDG  158
            VG ++LG V+D+ G  ++ R   +  ++   R +  APP+  SR  V  +L TGVR +DG
Sbjct  87   VGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  159  LITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIgergrevrefveLIMGEDG  218
            L+T G GQRMGIFA+AG GK+ L+ M+   +  DV VI+LIGERGREV EFV+++ + + 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  219  MARSVVVCATSDRSSIERakaayaataiaEYFRDQGKRVLLMMDSLTRFARAGREIGLAA  278
              + V+V ATSD +S++R +AA  AT++AEYFRDQGKRV+L +DS+TR+ARA R+++LA+
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  279  GEPPARRGFPPSVFAELPRLLERTGMGEHGSITALYTVLAEDDSGSDPIAEEVRGILDGH  338
            GE PARRG+P+SVF +LPRLLER G   +GSITA+YTVL E +  +DP+A+E+R+ILDGH
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  339  IILSREIAARNQYPAIDVLGSLSRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEY  398
            + LSR +A++ +YPAIDVL S+SR+  QV+T  H   A+ +R+L+++  E++ +++LGEY
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  399  QAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATLAALHEL  440
            ++G +   D A+   D ++A L Q   +YS+ D TL++++ +
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

309) BPSS1627 in NC_006351


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 185/403 (46%), Positives = 288/403 (72%), Gaps = 6/403 (1%)

Query  44   EATLGELCELRGAS--GALIQHAEVVGFTRNVALLSPFGTLGEINRGTRVIGLRRPLSVK  101
            + ++GELCE+R +     ++ +A+VVG+ R+ ++LS +G    ++R+  +    R+LS  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  102  VGNGILGRVIDSFGEPIDGRGELDYDAL---RPVLAAPPNPMSRRMVDASLATGVRIVDG  158
            VG ++LG V+D+ G  ++ R   +  ++   R +  APP+  SR  V  +L TGVR +DG
Sbjct  87   VGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  159  LITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIgergrevrefveLIMGEDG  218
            L+T G GQRMGIFA+AG GK+ L+ M+   +  DV VI+LIGERGREV EFV+++ + + 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  219  MARSVVVCATSDRSSIERakaayaataiaEYFRDQGKRVLLMMDSLTRFARAGREIGLAA  278
              + V+V ATSD +S++R +AA  AT++AEYFRDQGKRV+L +DS+TR+ARA R+++LA+
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  279  GEPPARRGFPPSVFAELPRLLERTGMGEHGSITALYTVLAEDDSGSDPIAEEVRGILDGH  338
            GE PARRG+P+SVF +LPRLLER G   +GSITA+YTVL E +  +DP+A+E+R+ILDGH
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  339  IILSREIAARNQYPAIDVLGSLSRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEY  398
            + LSR +A++ +YPAIDVL S+SR+  QV+T  H   A+ +R+L+++  E++ +++LGEY
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  399  QAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATLAALHELA  441
            ++G +   D A+   D ++A L Q   +YS+ D TL++++ +A
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFA  428

310) fliI in NC_006582


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 168/393 (43%), Positives = 270/393 (69%), Gaps = 5/393 (1%)

Query  37   IGELCYIWASPDQKGTKVRAEVVGFKDDRILLMPLDDTRRIAPGSYVEGTGKPLNVACGP  96
            IGELC I+ + +QK    RA+VVG++ +R +L  +++++ ++ +  +  TG++L+   G 
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY  89

Query  97   SLIGQIVNGVG---EPFLQSAALGDTDANYSTDNSPPNPLERPRISEIMSVGVRAIDGLL  153
            S++G +++  G   E F  ++ ++    +   D +PP+   R  + E +  GVRAIDGLL
Sbjct  90   SVLGAVLDPTGKIVERF--TPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  154  TMGKGQRVGIFAGSGVGKSTLMSMIAKQSDADVNVIALIGERGREVKEFVERDLGEEGLK  213
            T G GQR+GIFA++G GK+ LM M+  Q++ADV VI+LIGERGREV EFV+   + +   
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  214  KSVVVVATSDQPALLRVKGAQTATAIAEYFRDKGKNVNLMMDSVTRFAMAQREIGLAIGE  273
            K V+V ATSD P++ R ++AQ AT++AEYFRD+GK V L +DS+TR+A A R+++LA GE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  274  PPTTKGYPPSVFAMMPKLLERSGTNQSGSITGLYTVLVDGDDMNEPIADAVRGILDGHFV  333
             P+ +GYP+SVF  +P+LLER+G+   GSIT++YTVL+++++  +P+AD +R+ILDGH+ 
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  334  LDRQLANRGQYPAVNVLKSVSRLMKDLVENDHLHAAKLFRQRLADYEQSEDLISLGAYKQ  393
            L R+LA +G+YPA++VLKSVSR+  ++    H + A   R+ ++  E+ + +I LG Y+ 
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  394  GSSKDIDAAIHDHPAMLDFLKQEVEESDSFAET  426
            G + D D A++ + ++   L Q V +  SF +T
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

311) fliI in NC_015578


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 173/425 (41%), Positives = 284/425 (67%), Gaps = 8/425 (1%)

Query  18   IKYVGHVIKVQGILIESLGPSAVIGEVCRIEVPRG----KGVIQAEVVGLSNGIVQLMAY  73
            ++Y++   K+ G +IE+      IGE+C  E+ RG    + V +A+VVGL      L   
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELC--EIRRGWHQKQVVARAQVVGLQRERTVLSLI  64

Query  74   EDIEGIEIGNRvvasgaalgvavsNKLLGRVLDAMGRPSDG-KGEIDSPLQYPAIASPPP  132
             + +G+  +  + ++G AL+  V+  +LG VLD+ G+  +    E+ +  +   I  +PP
Sbjct  65   GNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPP  124

Query  133  PLSRRR-IKERIATGVRAIDGMLAAGRGQRLGIFAGSGVGKSTLLGMIARNTNADVNVVA  191
            + + R  ++E + TGVRAIDG+L+ G GQR+GIFA++G GK+ L+ M+  +T+ADV V++
Sbjct  125  SYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIG  184

Query  192  LIGERGREVNDFIENDLGPEGLARSVIIVTPSNSPPLARLRGAYTATAVAEYFRDQGLDV  251
            LIGERGREV +F++   +++   + V++ + S+ P++ R  +A  AT+VAEYFRDQG  V
Sbjct  185  LIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRV  244

Query  252  MLLFDSVTRFARAQREIGLAIGEPPATRGYTPSMFDSMPKLLERSGTSDRGSITGFYTIL  311
            +L++DS+TR+ARA R+++LA GE PA RGY +S+FD++P+LLER+G++  GSIT+FYT+L
Sbjct  245  VLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVL  304

Query  312  VDGDDMDEPVADTVRGILDGHIILSRDLAQRYHYPAIDVLTSISRLAPAVSGPVTNKAVG  371
            +++++  +P+AD +R+ILDGH+ LSR LA + HYPAIDVL S+SR+   V+ P      +
Sbjct  305  LESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQAS  364

Query  372  YIRRLMADYAAAEDLINVGAYRTGSNPAIDQAIAKREAIENFLVQNVDEKSTMSETLKTL  431
             +R+LM+     + +I++G YR G N   D+A+  R+++   L Q V + S+  +TL  +
Sbjct  365  AVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

Query  432  AAIAD  436
             A+AD
Sbjct  425  NAFAD  429

312) sctN in NC_006349


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  259 bits (966),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 183/401 (46%), Positives = 283/401 (71%), Gaps = 4/401 (0%)

Query  31   EATLGELCELRGAS--GALIQHAEVVGFTRNVALLSPFGTLGEINRGTRVIGLRRPLSVK  88
            + ++GELCE+R +     ++ +A+VVG+ R+ ++LS +G    ++R+  +    R+LS  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  89   VGNGILGRVIDSFGEPID--GRGELDYDALRPVIAAPPNPMSRRMVDASLATGVRIVDGL  146
            VG ++LG V+D+ G  ++            R +  APP+  SR  V  +L TGVR +DGL
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  147  ITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIgergrevrefveLIMGEDGM  206
            +T G GQRMGIFA+AG GK+ L+ M+   +  DV VI+LIGERGREV EFV+++ + +  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  207  ARSVVVCATSDRSSIERakaayaataiaEYFRDQGKRVLLMMDSLTRFARAGREIGLAAG  266
             + V+V ATSD +S++R +AA  AT++AEYFRDQGKRV+L +DS+TR+ARA R+++LA+G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  267  EPPARRGFPPSVFAELPRLLERTGMGEHGSITALYTVLAEDDSGSDPIAEEVRGILDGHI  326
            E PARRG+P+SVF +LPRLLER G   +GSITA+YTVL E +  +DP+A+E+R+ILDGH+
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  327  ILSREIAARNQYPAIDVLGSLSRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEYQ  386
             LSR +A++ +YPAIDVL S+SR+  QV+T  H   A+ +R+L+++  E++ +++LGEY+
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  387  AGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATLAALHEL  427
            +G +   D A+   D ++A L Q   +YS+ D TL++++ +
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

313) BP1026B_II1737 in NC_017832


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  259 bits (966),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 184/402 (46%), Positives = 287/402 (72%), Gaps = 6/402 (1%)

Query  44   EATLGELCELRGAS--GALIQHAEVVGFTRNVALLSPFGTLGEINRGTRVIGLRRPLSVK  101
            + ++GELCE+R +     ++ +A+VVG+ R+ ++LS +G    ++R+  +    R+LS  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  102  VGNGILGRVIDSFGEPIDGRGELDYDAL---RPVIAAPPNPMSRRMVDASLATGVRIVDG  158
            VG ++LG V+D+ G  ++ R   +  ++   R +  APP+  SR  V  +L TGVR +DG
Sbjct  87   VGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  159  LITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIgergrevrefveLIMGEDG  218
            L+T G GQRMGIFA+AG GK+ L+ M+   +  DV VI+LIGERGREV EFV+++ + + 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  219  MARSVVVCATSDRSSIERakaayaataiaEYFRDQGKRVLLMMDSLTRFARAGREIGLAA  278
              + V+V ATSD +S++R +AA  AT++AEYFRDQGKRV+L +DS+TR+ARA R+++LA+
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  279  GEPPARRGFPPSVFAELPRLLERTGMGEHGSITALYTVLAEDDSGSDPIAEEVRGILDGH  338
            GE PARRG+P+SVF +LPRLLER G   +GSITA+YTVL E +  +DP+A+E+R+ILDGH
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  339  IVLSREIAARNQYPAIDVLGSLSRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEY  398
            + LSR +A++ +YPAIDVL S+SR+  QV+T  H   A+ +R+L+++  E++ +++LGEY
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  399  QAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATLAALHEL  440
            ++G +   D A+   D ++A L Q   +YS+ D TL++++ +
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

314) sctN in NC_010530


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  258 bits (965),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 182/411 (45%), Positives = 293/411 (72%), Gaps = 5/411 (1%)

Query  39   KAVGMLINATGIQAHVGELCQLVTPGEPPLL---AEVVGFVQQTALLTPLGRTTGVSALT  95
            K  G +I+A   +  +GELC++    +   +   A+VVG+ ++ ++L+ +G + G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  96   EVIPSAHGHQCPAGAALLGRVLDALGEPIDG-KGALDGVARVPVDNEPPDPLTRRL-IRE  153
             + P++++     G ++LG VLD+ G  ++     +  ++   V + +P + + R+ +RE
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  154  PLATGVRAIDGLLTLGEGQRVGIFAPPGVGKSTLLGMLARGASSDVNVVALVGERGREVR  213
            PL TGVRAIDGLLT G GQR+GIFA++G GK+ L+ ML   + +DV V++L+GERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  214  EFIEYNLGSDGMARTVLVVSTSDRSPMERVRCAYTATAIAEHFRDQGRRVLLLVDSLTRL  273
            EF++   +S+   + VLV +TSD ++++R   A  AT++AE FRDQG+RV+L++DS+TR 
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  274  ARAQREIGLASGEPPTRRSYPPSVFSMLPQLLERAGTGVQGSITAAYTVLTEGEDDSDPI  333
            ARA R+++LASGE P+RR+YP+SVF  LP+LLER+G+  +GSITA YTVL E+E+++DP+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  334  AEEVRSILDGHIVLSRKLASAGQYPPVDVLQSVSRVMPQVVAGAHARDaarlrqllaryq  393
            A+E+RSILDGH+ LSRKLA+ G+YP++DVL+SVSRV  QV + +HA +A+ +R+L++R +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  394  elelllqIGEYRPGadpvadaavaampdIRAYLAQPAARLDTFAGAVDKLA  444
            EL+L++++GEYRPG +   D A+     ++A L QP A+  +F +++  + 
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

315) sctN in NC_014225


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  258 bits (964),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 174/404 (44%), Positives = 269/404 (67%), Gaps = 4/404 (0%)

Query  31   GMLIKAVVPQVKIGEVCLIKREGEP----LRAEVVGFTRDEVFLSPLGEMTGIGPSSEVI  86
            G +I A + +V IGE+C I+R  +      RA+VVG+ R+   LS +G+  G++    + 
Sbjct  18   GPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLY  77

Query  87   PTRLPLHVKVGDALLGRVLNGLGEPLDTNTKGPLVLNETAPVIQSPPDPLKRQRVSEPIS  146
            PT  +L   VG ++LG VL+  G  ++  T     ++E   +  +PP    R  V EP+ 
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLI  137

Query  147  VGVRVIDGTLTTGLGQRVGIFAAAGGGKSTLLGMIARNADADINVISLVGERGRELRDFI  206
             GVR IDG LT G+GQR+GIFA+AG GK+ L+ M+  +++AD+ VI+L+GERGRE+ +F+
Sbjct  138  TGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFV  197

Query  207  EKDLGPEGLKKSVLVISTSDQSAQLRLNAAYVATAIAEYFRDKGKSVILMMDSVTRFARA  266
            +   +++   K VLV++TSD ++  R NAA +AT++AEYFRD+GK V+L +DS+TR+ARA
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  267  IREVGLAAGEPPARAGYTPSVFSTLPKLLERSGRSDVGSITAFYTILVAGDDMNEPVADE  326
            +R+V+LA+GE PAR GY +SVF  LP+LLER+G +  GSITAFYT+L+ +++  +P+ADE
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  327  VRSILDGHIILSAELAHKYHYPAVDVLASKSRVMQTIVSEEHLSLAGKINEVLANYKKNE  386
            +RSILDGH+ LS  LA + HYPA+DVL S SRV   + +  H   A+ +  +++     +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  387  LLIKIGEYKRGSDKAGDFAIDHIDKVNNFLKQGIEEECSWDETM  430
            L+I +GEY+ G +   D A++  D ++  L Q + +  S D+T+
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

316) Desku_1782 in NC_015573


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  258 bits (965),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 180/429 (42%), Positives = 297/429 (70%), Gaps = 14/429 (3%)

Query  15   VRAAKLLRPTGQVVRVIG--LTVEVRGIAARIGEICDIH---VPGEAPVVTEVVGFREDV  69
            +++++LL+  +   ++ G  +  E+R++A  IGE+C+I+      +    ++VVG++ + 
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVA--IGELCEIRRGWHQKQVVARAQVVGLQRER  58

Query  70   TLLMPLGELRGIFPGCSVVPRGRGLSVAVGEHLLGRVLDGLGRPMD--GREL--IAPDQC  125
            T+L  +G+ +G+  +  + P GR+LS  VG  +LG VLD  G+ ++    E+  I+ ++ 
Sbjct  59   TVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER-  117

Query  126  YVPVDNSPPNPLSRQRITQIFSTGVRAIDAFLTCGRGQRLGIFAGSGVGKSTLLGMVARY  185
               +D +PP+  SR  + + + TGVRAID++LTCG GQR+GIFA++G GK+ L+ M+   
Sbjct  118  --VIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQ  175

Query  186  SSADVNVIALVGERGREVRDFIEGDLGPEGLARSVVVAATSDQPALVRVKAAFLASAIAE  245
            + ADV VI+L+GERGREV +F++   +++   + V+V ATSD P++ R +AA LA+++AE
Sbjct  176  TEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAE  235

Query  246  YFRDRGKDVLLLMDSITRFAMAQREVGLAIGEPPATRGYTPSVFALLPRLLERSGMGATG  305
            YFRD+GK V+L++DS+TR+A A R+V+LA GE PA RGY +SVF  LPRLLER+G  + G
Sbjct  236  YFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEG  295

Query  306  SITAFYTVLVEGDDLNEPITDAVRGILDGHIVLSREMAAQNHYPAIDVLQSVSRVMPEIV  365
            SITAFYTVL+E+++  +P++D +R+ILDGH+ LSR +A+Q HYPAIDVL+SVSRV  ++ 
Sbjct  296  SITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVT  355

Query  366  DAEHLTRAGRLRDLLATYRQSEDLINIGAYVAGTNPQVDAAVKAYPRIVQFLRQDMHEYS  425
             + H  +A+ +R L++   + + +I++G Y +G N + D A++    +   L Q + +YS
Sbjct  356  TPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYS  415

Query  426  SFEETMETL  434
            SF++T+  +
Sbjct  416  SFDDTLSGM  424

317) fliI in NC_010337


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  258 bits (964),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 168/408 (42%), Positives = 283/408 (70%), Gaps = 4/408 (0%)

Query  22   QVIGLVIQSDGPSANLGEVCLVSTQSGKQRV--RSEVVGFREGKTLLMPLGEMGGIGPGS  79
            ++ G +I+++     +GE+C +     +++V  R++VVG++  +T+L  +G+  G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  80   QVLATGDVLTVAVGEALLGRVldglgnpld--dggpIATTGDYPLTASPPNPLKRKRIQQ  137
             + +TG  L+  VG ++LG VLD  G+ ++       + + +  +  +PP+   R  +++
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  138  PLPLGVKAIDGLLTCGRGQRLGIFAGSGVGKSTLLGMIARNTTADINVIGLIGERGREVR  197
            PL  GV+AIDGLLTCG GQR+GIFA++G GK+ L+ M+  +T AD+ VIGLIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  198  EFIEKDLGPEGLARSVVVVATSDQPALVRLKGAFVATAIAEFFRDLGKDVMLMMDSVTRF  257
            EF++   +++   + V+V ATSD P++ R ++A +AT++AE+FRD GK V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  258  AMAQREVGLAVGEPPATRGYTPSVFAMLPKLLERSGTSDKGTITGLYTVLVDGDDMNEPI  317
            A A R+V+LA GE PA RGY +SVF  LP+LLER+G++  G+IT++YTVL+++++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  318  ADAVRGILDGHIVLSRDLAAQNHYPAIDILSSVSRVMIELVSKEHRDAAAQLRSVLATYR  377
            AD +R+ILDGH+ LSR LA+Q HYPAID+L SVSRV  ++ +  H + A+ +R +++   
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  378  EAKDLIDIGAYQKGANPQIDYSLKKIDACREFLRQDIFEAIPFDETIG  425
            E + +ID+G Y+ G N + D +++  D+ +  L Q + +  +FD+T++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

318) Rhom172_2094 in NC_015966


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  258 bits (964),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 168/409 (42%), Positives = 281/409 (69%), Gaps = 3/409 (0%)

Query  24   RPLHF-GKVQSVVGLLIEVSELPAAVGELCYIHEGQEPGARRIKAEVVGLRGHTTILMPL  82
            R L++ +  Q + G +IE      A+GELC I+ G +      +A+VVGL+ + T+L  +
Sbjct  5    RLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLI  64

Query  83   EETRGLRAGYLVEPSALPLTIRVGEAMLGRVVDANARPIDGKGP-LTVTDEQPVRNDPPP  141
             +++GL  + ++ P++ +L+ +VG ++LG V+D+ ++ ++   P ++   E+ V + +PP
Sbjct  65   GNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPP  124

Query  142  PLSRRM-IDTPLFTGIRAIDTFLTLGRGQRIGIFAGSGVGKSTLLGMIARRARADVNVIA  200
            + + R+ +  PL+TG+RAID +LT G GQR+GIFA++G GK+ L+ M+  ++ ADV VI+
Sbjct  125  SYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIG  184

Query  201  LIGERGREVQEFIADNLGPEGLKRSVVVAVTGDQAAMSRVKGASVAMAIAEYFRDRGLDV  260
            LIGERGREV EF+    +++   + V+V  T+D +++ R ++A +A ++AEYFRD+G  V
Sbjct  185  LIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRV  244

Query  261  LLMMDSITRVAMAQREIGLAVGEPPTTRGYTPSVFAMLPRLLERAGPGARGTITGIFTVL  320
            +L +DS+TR A A R+++LA GE P+ RGY +SVF  LPRLLER+G+ + G+IT+++TVL
Sbjct  245  VLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVL  304

Query  321  VDADDMNDPIGDAVRGILDGHIVLSRRLAHANHFPAIDVLQSVSRVMPRVTTAEHRALVE  380
            +++++  DP++D +R+ILDGH+ LSR+LA   H+PAIDVL+SVSRV  +VTT+ H     
Sbjct  305  LESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQAS  364

Query  381  EARRLLATYQEAEDLIRVGAYEMGTRPEIDRAILAHEALMAFLRQGVDE  429
              R+L++  +E + +I +G Y  G   + DRA+  +++L A L Q V +
Sbjct  365  AVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

319) GYMC52_1129 in NC_014915


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  258 bits (963),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 270/386 (70%), Gaps = 8/386 (2%)

Query  10   RVIGLMMESKGPKSSIGDLCYIHEQSGCRKI--PAEVVGFHEQHVLLMPFSATTHIAPGC  67
            ++ G ++E+     +IG+LC I+     +++   A+VVG++ ++ +L  ++ +  ++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  68   LVEATGRPLEVHVGDALIGMVLDPLGQPLDGSPLPPGLKPVSVER----DPPNPLVRPPI  123
            ++ +TGR+L   VG +++G VLDP G+ ++   + P + P+S ER     PP+   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  124  VEPLEVGIRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARHTSADVNVIALIGERGRE  183
             EPL  G+R ID+LL+ G GQR+GIFA++G GK+ LM M+  +T ADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  184  VREFLERDLGPDGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDSVT  243
            V EF++   +++   + V+V ATSD P++ R ++A  AT++AEYFRDQG  V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  244  RVAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDMNE  303
            R A A R+++LA GE P+ +GY +SVF  LP+LLER+G+ + G+ITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  304  PIADAVRGILDGHFVLERQLANKGHYPAINVLKSVSRVMPHMISAEHREAANRFRRLLST  363
            P+AD +R+ILDGH+ L R+LA +GHYPAI+VLKSVSRV  ++ ++ H E A+  R+L++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  364  YIDSEDLIQIGAYKRGSSQEIDEAIE  389
              + + +I++G Y+ G + + D A++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQ  398

320) fliI in NC_013411


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  258 bits (963),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 270/386 (70%), Gaps = 8/386 (2%)

Query  10   RVIGLMMESKGPKSSIGDLCYIHEQSGCRKI--PAEVVGFHEQHVLLMPFSATTHIAPGC  67
            ++ G ++E+     +IG+LC I+     +++   A+VVG++ ++ +L  ++ +  ++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  68   LVEATGRPLEVHVGDALIGMVLDPLGQPLDGSPLPPGLKPVSVER----DPPNPLVRPPI  123
            ++ +TGR+L   VG +++G VLDP G+ ++   + P + P+S ER     PP+   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  124  VEPLEVGIRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARHTSADVNVIALIGERGRE  183
             EPL  G+R ID+LL+ G GQR+GIFA++G GK+ LM M+  +T ADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  184  VREFLERDLGPDGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDSVT  243
            V EF++   +++   + V+V ATSD P++ R ++A  AT++AEYFRDQG  V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  244  RVAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDMNE  303
            R A A R+++LA GE P+ +GY +SVF  LP+LLER+G+ + G+ITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  304  PIADAVRGILDGHFVLERQLANKGHYPAINVLKSVSRVMPHMISAEHREAANRFRRLLST  363
            P+AD +R+ILDGH+ L R+LA +GHYPAI+VLKSVSRV  ++ ++ H E A+  R+L++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  364  YIDSEDLIQIGAYKRGSSQEIDEAIE  389
              + + +I++G Y+ G + + D A++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQ  398

321) ECBG_01249 in NC_020995


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  258 bits (963),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 174/426 (41%), Positives = 299/426 (71%), Gaps = 7/426 (1%)

Query  20   FTTYGKVSEVVGLLIKVEGLAVFIGEICEV--ALQNKTHTALAEVVGFVKKTVLLMPLDQ  77
            + +Y +   + G +I  E   V IGE+CE+  + ++K   A A+VVG+ +   +L  +++
Sbjct  9    YLAYPQ--KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  78   LEGIGPGCLVRPTGKSLTVKIddtllghtldglgRPLD-MALELESAPEYPVSQDSPDPF  136
             +G++ + ++ PTG++L+  ++ ++LG  LD  G+ ++  + E+ + +E  V + +P ++
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSY  126

Query  137  -RRQKIAEIMPTGVRAIDGLLTVGLGQRIGIFAGSGVGKSTLLGMLARYCEADVIVIGLI  195
              R  + E + TGVRAIDGLLT G+GQR+GIFA++G GK+ L+ ML    EADV+VIGLI
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  196  GERGREVKEFIENDLGPEGYRKSVVVCATSDMPPLVRLKGAHVATAIAEYYRDQGKKVVL  255
            GERGREV EF++   +++   K V+V ATSD P++ R ++A++AT++AEY+RDQGK+VVL
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  256  MMDSVTRFAMAQREIGLSTGEPPTTKGYTPSVFTALPKLLERSGMSDKGSITAFYTVLVE  315
             +DS+TR+A A R+++L++GE P+ +GY +SVF  LP+LLER+G +  GSITAFYTVL+E
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  316  GDDMNEPIADAVRGILDGHILLSRKIAAQNHYPAIDIQNSLSRLMKTLVSEEQHKHAGEL  375
            +++  +P+AD +R+ILDGH+ LSRK+A+Q HYPAID+ +S+SR+   + +  +  +A+ +
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  376  KENMAVYAEAKDLIDIGAYKSGSNALTDQAIALHHPILRFLQQKVDERIPFEQTIFELAH  435
            +  M+   E + +ID+G Y++G N   D+A+ +++++   L Q V +  +F++T+  + +
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM-N  425

Query  436  LFSEEA  441
             F+++ 
Sbjct  426  AFADQN  431

322) BDL_4981 in NC_021877


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  258 bits (963),  Expect = 7e-70, Method: Compositional matrix adjust.
 Identities = 184/402 (46%), Positives = 287/402 (72%), Gaps = 6/402 (1%)

Query  44   EATLGELCELRGAS--GALIQHAEVVGFTRNVALLSPFGTLGEINRGTRVIGLRRPLSVK  101
            + ++GELCE+R +     ++ +A+VVG+ R+ ++LS +G    ++R+  +    R+LS  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  102  VGNGILGRVIDSFGEPIDGRGELDYDAL---RPVLAAPPNPMSRRMVDASLATGVRIVDG  158
            VG ++LG V+D+ G  ++ R   +  ++   R +  APP+  SR  V  +L TGVR +DG
Sbjct  87   VGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  159  LITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDVNVIALIgergrevrefveLIMGEDG  218
            L+T G GQRMGIFA+AG GK+ L+ M+   +  DV VI+LIGERGREV EFV+++ + + 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  219  MARSVVVCATSDRSSIERakaayaataiaEYFRDQGKRVLLMMDSLTRFARAGREIGLAA  278
              + V+V ATSD +S++R +AA  AT++AEYFRDQGKRV+L +DS+TR+ARA R+++LA+
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  279  GEPPARRGFPPSVFAELPRLLERTGMGEHGSITALYTVLAEDDSGSDPIAEEVRGILDGH  338
            GE PARRG+P+SVF +LPRLLER G   +GSITA+YTVL E +  +DP+A+E+R+ILDGH
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  339  IVLSREIAARNQYPAIDVLGSLSRIMPQVATREHVGAAGRLRQLLAKHREIETLLQLGEY  398
            + LSR +A++ +YPAIDVL S+SR+  QV+T  H   A+ +R+L+++  E++ +++LGEY
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  399  QAGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATLAALHEL  440
            ++G +   D A+   D ++A L Q   +YS+ D TL++++ +
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

323) fliI in NC_011961


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  258 bits (963),  Expect = 7e-70, Method: Compositional matrix adjust.
 Identities = 180/398 (46%), Positives = 272/398 (69%), Gaps = 7/398 (1%)

Query  40   DLQIGDLCHIFPSLSEEGRLA-AEVVGFHDERLILVPLAELRGVRHGSRVVRAPEALHVP  98
            D+ IG+LC+I  +  +   +A A+VVG++ ER +L  +++ +G+ ++  +  +  AL   
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  99   VGPELLGRVIDGLGRPID----GKGPLRCRRRLRIGGAPPSPLQRAPIRDILPTGVRTID  154
            VG  +LG V+D  G+ ++      +P+   R + +  APPS   R  +R+ L TGVR+ID
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV--APPSYASRVGVREPLITGVRAID  144

Query  155  ALLTCGRGQRLGIFAGSGVGKSTLLGMISRNAVCDVRVIALIGERGREVQEFIERDLGPA  214
            +LLTCG GQR+GIFA++G GK+ L+ M+  ++  DV VI+LIGERGREV EF++   ++ 
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  215  GLEQAVVVVSTSDQPALMRIKAAWTATLIAEYFRDRGMSVVLMMDSVTRLAMAQREVGLA  274
              E+ V+V +TSD P++ R +AA  AT +AEYFRD+G  VVL +DS+TR A A R+V+LA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  275  AGEPPATRGYPPSVFALLPRLLERAGNAEQGSITAFYTVLVEGDDLNEPISDTVRGILDG  334
            +GE PA RGYP+SVF  LPRLLER+G + +GSITAFYTVL+E+++  +P++D +R+ILDG
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  335  HIVLARTLADRGHYPAIDVLASVSRLMPSLVTPDHRALASEVRELLAAYESARDLIDIGA  394
            H+ L+R LA++GHYPAIDVL SVSR+   + TP H   AS VR L++  E  + +ID+G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  395  YVHGTNPTVDRALSLMPEIRRFLQQKPEERATFAETVA  432
            Y  G N   DRA+ +   ++  L Q   + ++F +T++
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

324) BTH_II0744 in NC_007650


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  257 bits (960),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 179/401 (45%), Positives = 282/401 (71%), Gaps = 4/401 (0%)

Query  44   EATLGELCELRSAS--GALIQHAEVVGFTRNVALLSPFGTLGEINRGTRVIGLRRPLSVK  101
            + ++GELCE+R +     ++ +A+VVG+ R+ ++LS +G    ++R+  +    R+LS  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  102  VGNGILGRVIDSFGEPID--GRGELDYDALRPVIAPPPNPMSRRMVDASLATGVRIVDGL  159
            VG ++LG V+D+ G  ++            R +  +PP+  SR  V  +L TGVR +DGL
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  160  ITLGEGQRMGIFAPAGVGKSTLLGMFARGASCDINVIALIgergrevrefveLIMGEDGM  219
            +T G GQRMGIFA+AG GK+ L+ M+   +  D+ VI+LIGERGREV EFV+++ + +  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  220  ARSVVVCATSDRSSIERakaayaataiaEYFRDQGKRVLLMMDSLTRFARAGREIGLAAG  279
             + V+V ATSD +S++R +AA  AT++AEYFRDQGKRV+L +DS+TR+ARA R+++LA+G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  280  EPPARRGFPPSVFAELPRLLERTGMGERGSITALYTVLAEDDSGSDPIAEEVRGILDGHI  339
            E PARRG+P+SVF +LPRLLER G    GSITA+YTVL E +  +DP+A+E+R+ILDGH+
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  340  ILSREIAARNQYPAIDVLGSLSRIMPQIAAREHVGAAGRLRQLLAKHREIETLLQLGEYQ  399
             LSR +A++ +YPAIDVL S+SR+  Q+++  H   A+ +R+L+++  E++ +++LGEY+
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  400  AGSDPAADEAVAKIDRIRAFLNQRTDEYSPPDATLAALHEL  440
            +G +   D A+   D ++A L Q   +YS+ D TL++++ +
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

325) fliI in NC_006510


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  257 bits (960),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 269/386 (70%), Gaps = 8/386 (2%)

Query  10   RVIGLMMESKGPKSSIGDLCYIHEQSGCRKI--PAEVVGFHEQHVLLMPFSAMSHIAPGC  67
            ++ G ++E+     +IG+LC I+     +++   A+VVG++ ++ +L  ++    ++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  68   LVEATGRPLEVHVGDALIGMVLDPLGQPLDGSPLPPGLKPVSVER----DPPNPLVRPPI  123
            ++ +TGR+L   VG +++G VLDP G+ ++   + P + P+S ER     PP+   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  124  VEPLEVGIRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARHTSADVNVIALIGERGRE  183
             EPL  G+R ID+LL+ G GQR+GIFA++G GK+ LM M+  +T ADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  184  VREFLERDLGPDGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDSVT  243
            V EF++   +++   + V+V ATSD P++ R ++A  AT++AEYFRDQG  V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  244  RVAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDMNE  303
            R A A R+++LA GE P+ +GY +SVF  LP+LLER+G+ + G+ITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  304  PIADAVRGILDGHFVLERQLANKGHYPAINVLKSVSRVMPHMISAEHREAANRFRRLLST  363
            P+AD +R+ILDGH+ L R+LA +GHYPAI+VLKSVSRV  ++ ++ H E A+  R+L++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  364  YIDSEDLIQIGAYKRGSSQEIDEAIE  389
              + + +I++G Y+ G + + D A++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQ  398

326) Marme_1076 in NC_015276


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 186/423 (44%), Positives = 296/423 (70%), Gaps = 11/423 (2%)

Query  49   KINGILVESRIADARIGDLCTIQ-GRGNHRVLA--EIIGFSSDIVLLSALGALEGISVGA  105
            KI G ++E+ + D  IG+LC I+ G+ + +V+A  +++G+  +  +LS +G  +G+S + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  106  SIMPHYQAHCIDSDESLLGSVLDGFGRLLQGKRDAFTLEESEHTSKVIRDAIAPTQRPRI  165
             + P  +A     + S+LG+VLD  G+++    + FT E +  +   + D  +P+  +R+
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIV----ERFTPEVAPISEERVIDVAPPSYASRV  130

Query  166  S--APMPTGVRAIDGLLTIGEGQRIGVFAGAGCGKTTLLAELARNMPCDVIVFGLIGERG  223
            +   P+ TGVRAIDGLLT G GQR+G+FA+AGCGKT L+  L  +   DV+V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  224  RELREFLDHELDEELRSRSVLVCSTSDrtsmeraraastataiaeGFRAQGKRVLLLIDS  283
            RE+ EF+D     + + + VLV +TSD  S++R  AA  AT++AE FR QGKRV+L+IDS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  284  LTRFARAQREIGLAAGEPPGRGGFPPSVYTMLPRLVERAGNMEGAGSITALYTVLIEGDV  343
            +TR+ARA R+++LA+GE P+R G+P+SV+  LPRL+ER+G   + GSITA+YTVL+E++ 
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-TSEGSITAFYTVLLESEE  309

Query  344  IAGDPVADEVRSLLDGHIILSRKLAEKNHYPAIDVLGSISRTMPNVTDPNHIQSAAVLRN  403
              +DP+ADE+RS+LDGH+ LSRKLA + HYPAIDVL S+SR   +VT P H + A+ +R+
Sbjct  310  -EADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  404  LMSAYKEVEMLIRLGEYEQGNDPLTDTAVALNGTILEFLQQSMRSPSSIQDTLHALSSIS  463
            LM+   E++++I LGEY  G++   D A+ + +++   L Q++   SS++DTL ++++++
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFA  428

Query  464  QHA  466
            ++ 
Sbjct  429  DQN  431

327) Clocel_1717 in NC_014393


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  257 bits (961),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 160/376 (43%), Positives = 261/376 (70%), Gaps = 3/376 (0%)

Query  59   EVVGFKSDDIILMPLGELVGIAPGCRVVATGIPLSVNCSYDLLGKIIDGLGRPLDK---S  115
            +VVG++ +  +L  +G+  G++ +  + +TG +LS   +Y +LG ++D  G+ +++    
Sbjct  50   QVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPE  109

Query  116  SIPQGEMYPLDTNPPDPLKRRRIKEILPTGVRAIDGFLTCGEGQRVGIFAGSGVGKSTLL  175
              P +E   +D  PP    R  ++E L TGVRAIDG+LTCG GQR+GIFA++G GK+ L+
Sbjct  110  VAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLM  169

Query  176  GMIAREAQADINVIALIGERGREVLDFIEKDLGEEGMKRSIVVCATSDQPALVRLKGAFT  235
             M+  +++AD+ VI+LIGERGREV +F++   + +   + ++V ATSD P++ R ++A  
Sbjct  170  HMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQL  229

Query  236  ATAIAEYFRDQGKKVILMMDSVTRFAMAQREVGLAVGEPPATKGYTPSVFAMLPKLMERS  295
            AT++AEYFRDQGK+V+L +DS+TR+A A R+V+LA GE PA +GY +SVF  LP+L+ER+
Sbjct  230  ATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERP  289

Query  296  GMSEKGSITAFYTVLVDGDDFNEPIADAVRGILDGHIVLSRALAAQNHFPAIDVLSSISR  355
            G +  GSITAFYTVL+++++  +P+AD +R+ILDGH+ LSR LA+Q H+PAIDVL S+SR
Sbjct  290  GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSR  349

Query  356  LMSEIAEEEHKKSASLARDLLATYKNSEDLINIGAYVSGSNKKIDMAIFHNEKINLFLKQ  415
            + ++++   H   AS  R L++   + + +I++G Y +G N   D A+   + ++  L Q
Sbjct  350  VFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQ  409

Query  416  QVKEKSAFEDSIDNLK  431
             V + S+F+D++  ++
Sbjct  410  PVAQYSSFDDTLSGMN  425

328) Fnod_0758 in NC_009718


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 179/417 (43%), Positives = 283/417 (68%), Gaps = 11/417 (2%)

Query  27   EYAGEVQKIIGLTIESRGPDAALGELCKILVG-NKKAL---AEVVGFKEDLTILMPLEDV  82
            +Y +  QKI G  IE+   D A+GELC I  G ++K +   A+VVG++ + T+L  + + 
Sbjct  8    QYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNA  67

Query  83   TGLKKGCEVLKTGRTVSVPVGEELKGRVIDALGRPIDGKRLV-----LKEYRQIVSEAPN  137
             GL ++  +  TGR++S  VG  + G V+D+ G+ ++  R+      + E R I   +P+
Sbjct  68   QGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEERVIDVAPPS  125

Query  138  PLIRKRILEPLPVGVRAIDGFLTLGKGQRIGIFAGSGVGKSTLLGMIARNTTADINVIAL  197
               R  + EPL  GVRAIDG+LT G GQR+GIFA++G GK+ L+ M+  +T AD+ VI+L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  198  IGERGREVREFIEKDLGEEGIKRSVVVVSTSDQPALLRIKALLTATTIAEYFRDKGYAVM  257
            IGERGREV EF++   + +   + V+V +TSD P++ R +A   ATT+AEYFRD+G  V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  258  LMVDSLTRWAMAQREVGLAIGEPPTTRGYPPSVFAQLPKILERAGNSDKGSITGIYTVLV  317
            L +DS+TR A A R+V+LA GE P+ RGYP+SVF +LP++LER+G +  GSIT++YTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  318  EADDFNEPISDTVRGIVDGHIILSRKLAESNHFPAIDVLMSISRLMVDITKPEHIQSARA  377
            E+++  +P++D +R+I+DGH+ LSRKLA   H+PAIDVL S+SR+  ++T P H + A A
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  378  IRDIIATYNDAKDLIDVGAYKKGANPKIDKSIELIDEINKFLRQGIKEKMSFQDTVD  434
            +R +++  ++ + +ID+G Y+ G N   D+++++ D ++  L Q + +  SF+DT+ 
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

329) fliL in NC_003030


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 174/420 (42%), Positives = 280/420 (67%), Gaps = 20/420 (4%)

Query  26   NKVVGLTIEVDGIKAFVGEVCII---YNERNRPIKCEVVGFNEGRVILMPLGELEGISPG  82
            +K+ G  IE +     +GE+C I    ++++   + +VVG++  R +L  +G+ +G+S +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  83   CRVVQTGIPLSVKCSDELLGKVLDGLG----------APLRGEEVKSGVLYQLDREPPDP  132
              +  TG +LS   +  +LG VLD  G          AP+  E V       +D  PP  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-------IDVAPPSY  126

Query  133  LKRRRIKNSIETGVRAIDGFLTCGEGQRIGIFAGSGVGKSTTLGMIAREAKADVNVIALI  192
              R  +++++ TGVRAIDG+LTCG GQR+GIFA++G GK+  + M+  ++ ADV VI+LI
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  193  GERGREVLDFIEKDLGEEGMKRSVIVCATSDKPALVRLKGAFTATAIAEYFRDKGKKVIL  252
            GERGREV +F++   + +   + V+V ATSD P++ R ++A  AT++AEYFRD+GK+V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  253  MMDSVTRFAMAQREVGLATGEPPATKGYTPSVFAMLPRLMERSGMAETGSITAFYTVLVD  312
             +DS+TR+A A R+V+LA+GE PA +GY +SVF  LPRL+ER+G +  GSITAFYTVL++
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  313  GDDFNEPIADAVRSILDGHIVLSRNLAAQNHYPAIDVLSSVSRLMSEIADSDHKKAAGLA  372
            +++  +P+AD +RSILDGH+ LSR+LA+Q HYPAIDVL SVSR+ ++++ + H   A+  
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  373  RDLLAEYKKNEDLINIGAYVKGTNNKVDAAINYNDRIISYLKQGIEEKSSFEESINSLKS  432
            R L++     + +I++G Y  G N   D A++  D + + L Q + + SSF+++++++++
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

330) fliI in NC_015687


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 174/420 (42%), Positives = 280/420 (67%), Gaps = 20/420 (4%)

Query  26   NKVVGLTIEVDGIKAFVGEVCII---YNERNRPIKCEVVGFNEGRVILMPLGELEGISPG  82
            +K+ G  IE +     +GE+C I    ++++   + +VVG++  R +L  +G+ +G+S +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  83   CRVVQTGIPLSVKCSDELLGKVLDGLG----------APLRGEEVKSGVLYQLDREPPDP  132
              +  TG +LS   +  +LG VLD  G          AP+  E V       +D  PP  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-------IDVAPPSY  126

Query  133  LKRRRIKNSIETGVRAIDGFLTCGEGQRIGIFAGSGVGKSTTLGMIAREAKADVNVIALI  192
              R  +++++ TGVRAIDG+LTCG GQR+GIFA++G GK+  + M+  ++ ADV VI+LI
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  193  GERGREVLDFIEKDLGEEGMKRSVIVCATSDKPALVRLKGAFTATAIAEYFRDKGKKVIL  252
            GERGREV +F++   + +   + V+V ATSD P++ R ++A  AT++AEYFRD+GK+V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  253  MMDSVTRFAMAQREVGLATGEPPATKGYTPSVFAMLPRLMERSGMAETGSITAFYTVLVD  312
             +DS+TR+A A R+V+LA+GE PA +GY +SVF  LPRL+ER+G +  GSITAFYTVL++
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  313  GDDFNEPIADAVRSILDGHIVLSRNLAAQNHYPAIDVLSSVSRLMSEIADSDHKKAAGLA  372
            +++  +P+AD +RSILDGH+ LSR+LA+Q HYPAIDVL SVSR+ ++++ + H   A+  
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  373  RDLLAEYKKNEDLINIGAYVKGTNNKVDAAINYNDRIISYLKQGIEEKSSFEESINSLKS  432
            R L++     + +I++G Y  G N   D A++  D + + L Q + + SSF+++++++++
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

331) CEA_G2173 in NC_017295


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 174/420 (42%), Positives = 280/420 (67%), Gaps = 20/420 (4%)

Query  26   NKVVGLTIEVDGIKAFVGEVCII---YNERNRPIKCEVVGFNEGRVILMPLGELEGISPG  82
            +K+ G  IE +     +GE+C I    ++++   + +VVG++  R +L  +G+ +G+S +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  83   CRVVQTGIPLSVKCSDELLGKVLDGLG----------APLRGEEVKSGVLYQLDREPPDP  132
              +  TG +LS   +  +LG VLD  G          AP+  E V       +D  PP  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-------IDVAPPSY  126

Query  133  LKRRRIKNSIETGVRAIDGFLTCGEGQRIGIFAGSGVGKSTTLGMIAREAKADVNVIALI  192
              R  +++++ TGVRAIDG+LTCG GQR+GIFA++G GK+  + M+  ++ ADV VI+LI
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  193  GERGREVLDFIEKDLGEEGMKRSVIVCATSDKPALVRLKGAFTATAIAEYFRDKGKKVIL  252
            GERGREV +F++   + +   + V+V ATSD P++ R ++A  AT++AEYFRD+GK+V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  253  MMDSVTRFAMAQREVGLATGEPPATKGYTPSVFAMLPRLMERSGMAETGSITAFYTVLVD  312
             +DS+TR+A A R+V+LA+GE PA +GY +SVF  LPRL+ER+G +  GSITAFYTVL++
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  313  GDDFNEPIADAVRSILDGHIVLSRNLAAQNHYPAIDVLSSVSRLMSEIADSDHKKAAGLA  372
            +++  +P+AD +RSILDGH+ LSR+LA+Q HYPAIDVL SVSR+ ++++ + H   A+  
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  373  RDLLAEYKKNEDLINIGAYVKGTNNKVDAAINYNDRIISYLKQGIEEKSSFEESINSLKS  432
            R L++     + +I++G Y  G N   D A++  D + + L Q + + SSF+++++++++
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

332) Tresu_1125 in NC_015385


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  257 bits (962),  Expect = 8e-70, Method: Compositional matrix adjust.
 Identities = 174/424 (42%), Positives = 280/424 (67%), Gaps = 6/424 (1%)

Query  18   IKYTGSVIGVKGLMIESKGPRSVIGEICTIHIPSIQSSVLA--EVVGLEDSSVRLMAYGE  75
            ++Y +    + G +IE+      IGE+C I+    Q  V+A  +VVGL+     L   G+
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  76   TKGIEVGCEVVASGHVLEVPVGLSLLGRVIDATGK---PYDGKGEIFPEAYYPALASPPN  132
            ++G+  +  + ++G+ L   VG S+LG V+D+TGK    +      ++E     +A+P+ 
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSY  126

Query  133  PMERKPIDKRIVTGVRAIDGILTVGKGQRLGIFAGSGVGKSTLLSMIARNTNADINVIGL  192
            +  R  +   ++TGVRAIDG+LT G GQR+GIFA++G GK+ L+ M+  +T+AD+ VIGL
Sbjct  127  A-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  193  IGERGREVMDFIKRDLGEEGLKRSVLVVATSDQPSISRLRAAYVTTAIAEYFRDQGKDVM  252
            IGERGREV +F+    + +   + VLV ATSD PS+ R  AA ++T++AEYFRDQGK V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  253  LMFDSVTRFAHAQREIGLATGEPPAQRGYPPSVFDMLPKLLERTGTNDKGSITAFYTVLV  312
            L +DS+TR+A+A R+++LA+GE PA+RGYP+SVFD LP+LLER G+   GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  313  DGDDMDEPIADKVRGTLDGHIVLQRSLAARQHYPAIDMLTSISRLSKRVSGTCTKKAVQR  372
            ++++  +P+AD +R+ LDGH+ L R LA++ HYPAID+L S+SR+  +V+          
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  373  VRRWISVYSEQEEMINAGVYQKGSSPEIDEAIDHHQAVEEFLCQEENCHITIEDTLKSLS  432
            VR+ ++   E +  I+ G Y+ G + + D A++ ++++   LCQ      +++DTL +++
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

Query  433  ELSG  436
             +++
Sbjct  426  AFAD  429

333) Anamo_0264 in NC_018024


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 190/416 (46%), Positives = 287/416 (69%), Gaps = 8/416 (1%)

Query  31   KAIGIVIESKGPDVRVGDLCEIR--YRDKSMSLPAEVVGFSENRVLLMPLGELTDIGPGC  88
            K  G +IE+   DV +G+LCEIR   ++K +   A+VVG+  +R +L  +G+  +++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  89   DVVAVGQKlgvrvgpgllgrvlnglgEPID----DKGPIIAGEVYPLYAKPPHPLLRKPV  144
             + + G+ L+ +VG ++LG VL+  G  ++    + +PI    V  +   PP    R  V
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV--APPSYASRVGV  132

Query  145  ATPLPVGVKAIDALLTLGRGQRVGIFSGSGVGKSTLMGMMVRNTEAEISVIGLIGERGRE  204
              PL  GV+AID+LLT G GQR+GIF+++G GK+ LM M++ +TEA++ VIGLIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  205  VGEFLERDLGSSGLKRSVVVVATSDQPPLIRLKAALTATAIAEYFRDRGKDVLLLMDSVT  264
            V EF++   +S    + V+V ATSD P++ R +AA  AT++AEYFRD+GK V+L++DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  265  RVAMAQRDVGLAIGEPPATRGYTPSVFAFLPKLLERAGAGERGSITGVYNVLVEGDDMNE  324
            R A A RDV+LA GE PA RGY +SVF  LP+LLER+GA   GSIT+ Y VL+E+++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  325  PVADTVRGILDGHIVLSRKLASKGHYPAIDVLRSVSRVMPNITSQEHLEAARRVRELLAI  384
            P+AD +R+ILDGH+ LSRKLA++GHYPAIDVL+SVSRV  ++T+  H E A  VR L++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  385  YEDAEDLVNIGAYKEGSNINIDWALRYLDDVLDFLCQPVEGRFSFEETVKKLISLA  440
             E+ + ++++G Y+ G NI+ D+A++  D +   LCQPV    SF++T+  + ++A
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFA  428

334) rhcN in NC_012586


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 188/426 (45%), Positives = 293/426 (69%), Gaps = 20/426 (4%)

Query  33   RRITGIIVHATAPMVRIGELCHLRD--PVSGATvpaevvgfeeeeavLTPIGDLDGMSTR  90
            ++ITG I++A    V IGELC++R           A+VVG++ E +VL+ IG+ +G+S  
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  91   AEVIATGRTLQIPVCDDLLGRVVNPLGEILD--------VSDERAIPVVTDTYYPTHRPP  142
              + +TGR+L   V   +LG V++P G I++        +S+ER I V          PP
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVA---------PP  124

Query  143  PHALRRDLITEPLQLGIRAIDGLLTVARGQRVGIFGEPGVGKSSLLSAIVRGTKADVIVI  202
            + A R + + EPL  G+RAIDGLLT + GQR+GIF+ +G GK+ L+  ++  T ADV+VI
Sbjct  125  SYASRVG-VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVI  183

Query  203  GLIGERGREVREFIEGQLGEEGrrrsvvvvATSDRPAIERVKaayaataiaEYFRDQRRD  262
            GLIGERGREV EF++   + + + + V+V ATSD P+++R +AA  AT++AEYFRDQ + 
Sbjct  184  GLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKR  243

Query  263  VLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSLFAALPRLLERAGPGQGGSITALYTV  322
            V+L++DS+TR+ARA R+++LA+GE P+RRGYP+S+F  LPRLLER+G+   GSITA+YTV
Sbjct  244  VVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTV  303

Query  323  LTEGDGTLDPVAEETKAILDGHIMLSSALAERNFFPAIDILKSRSRLMETVAGRTHRDHA  382
            L E++   DP+A+E ++ILDGH+ LS  LA +  +PAID+LKS SR+   V+  TH ++A
Sbjct  304  LLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQA  363

Query  383  ARIRTLLARYEEIELLLRVGEYERGADALSDEAIDKRDAIEAFLQQSGDEFSPLEATVEH  442
            + +R L++R EE++L++ +GEY  G +  +D A++ RD++ A L Q+  ++S+++ T+  
Sbjct  364  SAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSG  423

Query  443  LRVLAG  448
            +  +A+
Sbjct  424  MNAFAD  429

335) GC56T3_2331 in NC_014206


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 165/386 (43%), Positives = 269/386 (70%), Gaps = 8/386 (2%)

Query  10   RVIGLMMESKGPKSSIGDLCYIHEQSGCRKI--PAEVVGFHEQHVLLMPFSATTHIAPGC  67
            ++ G ++E+     +IG+LC I+     +++   A+VVG++ ++ +L  ++ +  ++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  68   FVEATGRPLEVHVGDALIGMVLDPLGQPLDGSLLPPGLKPVSVER----DPPNPLVRPPI  123
             + +TGR+L   VG +++G VLDP G+ ++   + P + P+S ER     PP+   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVER--FTPEVAPISEERVIDVAPPSYASRVGV  132

Query  124  VEPLEVGIRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARHTSADVNVIALIGERGRE  183
             EPL  G+R ID+LL+ G GQR+GIFA++G GK+ LM M+  +T ADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  184  VREFLERDLGPDGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDSVT  243
            V EF++   +++   + V+V ATSD P++ R ++A  AT++AEYFRDQG  V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  244  RVAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDMNE  303
            R A A R+++LA GE P+ +GY +SVF  LP+LLER+G+ + G+ITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  304  PIADAVRGILDGHFVLERQLANKGHYPAINVLKSVSRVMPHVISAEHREAANRFRRLLST  363
            P+AD +R+ILDGH+ L R+LA +GHYPAI+VLKSVSRV  +V ++ H E A+  R+L++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  364  YIDSEDLIQIGAYKRGSSQEIDEAIE  389
              + + +I++G Y+ G + + D A++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQ  398

336) fliI in NC_020210


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 269/386 (70%), Gaps = 8/386 (2%)

Query  10   RVIGLMMESKGPKSSIGDLCYIHEQSGCRKI--PAEVVGFHEQHVLLMPFSATTHIAPGC  67
            ++ G ++E+     +IG+LC I+     +++   A+VVG++ ++ +L  ++ +  ++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  68   FVEATGRPLEVHVGDALIGMVLDPLGQPLDGSPLPPGLKPVSVER----DPPNPLVRPPI  123
             + +TGR+L   VG +++G VLDP G+ ++   + P + P+S ER     PP+   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  124  VEPLEVGIRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARHTSADVNVIALIGERGRE  183
             EPL  G+R ID+LL+ G GQR+GIFA++G GK+ LM M+  +T ADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  184  VREFLERDLGPDGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDSVT  243
            V EF++   +++   + V+V ATSD P++ R ++A  AT++AEYFRDQG  V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  244  RVAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDMNE  303
            R A A R+++LA GE P+ +GY +SVF  LP+LLER+G+ + G+ITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  304  PIADAVRGILDGHFVLERQLANKGHYPAINVLKSVSRVMPHMISAEHREAANRFRRLLST  363
            P+AD +R+ILDGH+ L R+LA +GHYPAI+VLKSVSRV  ++ ++ H E A+  R+L++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  364  YIDSEDLIQIGAYKRGSSQEIDEAIE  389
              + + +I++G Y+ G + + D A++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQ  398

337) C770_GR4pB208 in NC_019847


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 179/417 (43%), Positives = 284/417 (69%), Gaps = 8/417 (1%)

Query  26   NVSGLIVRAAIPAARIGELCELRE--PGKGRIGLADVVGIDGETAFLSLHGETRGISVRT  83
            +++G I+ A +    IGELCE+R     K  ++ A+VVG++ E + LSL G+++G+S   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  84   EVVPTGCEPFIAAGDF-LLGAIIDAHGDVVRK-SPNSSADKSRASLPLYGRPADPLSRRP  141
             + PTG  ++ A  ++ +LGA++D+ G +V + +P+ ++      + +   P+   SR  
Sbjct  75   VLYPTG-RALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV--APPSYASRVG  131

Query  142  VNRLFKSGIAAIDGFLTCGEGQRIGIFGPPGAGKSTLVSEIIANSEADVVVCALVGERGR  201
            V   + +G+ AIDG+LTCG GQR+GIF+++G GK+ L+  +I ++EADV V +L+GERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  202  EVGEFIADVMPEGAPSNVVLVIATSDRPALERFKAVLTATAVAEHFRDRGKRVLLVVDSV  261
            EV EF+  + +     + VLV+ATSD P+++R +A   AT+VAE FRD+GKRV+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  262  TRMARALREVGLAAGEPPVRRGFPPSVFSALPTIFERSGNNAAGTMTAFYTVLVEGEEQE  321
            TR ARALR+V+LA+GE P RRG+P+SVF  LP ++ER+G  + G++TAFYTVL+E+EE+ 
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  322  DPIAEETHSLLDGHIVLSDKMARAGRFPAIDVLASRSRTMNAVVSNAHRRAAEKVRSLLA  381
            DP+A+E +S+LDGH+ LS K+A  G++PAIDVL S SR    V + +H   A  VR L++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  382  LYEEVELLIRVGEYCEGRDAAVDEAVSKRDRINQFLYGGQGPH-GFHDIVAGLEELA  437
              EE++L+I +GEY  G +   D A+  RD ++  L    +   +F+D ++G++ +A
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFA  428

338) fliI in NC_014145


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 171/401 (43%), Positives = 284/401 (71%), Gaps = 15/401 (3%)

Query  33   RVRGLILEAQGLEASLGERC--RISTEQNRVID-AEVVGFNGDHVQLMALGEVQGLTPGA  89
            ++ G I+EA+  + ++GE C  R + +Q++V+  A+VVG++ ++  L  +G+ QGL+ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  90   RVHPVPGDIRIPVGPELLGRVLDGNGRPLDGDGALLASHYTTLSTQQINPLA------RA  143
             + P    +   VG  +LG VLD  G+ ++     ++++ + +S +++  +A      R 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVER----FTPEVAPISEERVIDVAPPSYASRV  130

Query  144  LVRQPLDVGVRAINALFTVGRGARMGLFAGSGVGKSVLLGMMARNTNADVIVVGLIGERG  203
             VR+PL  GVRAI++L+T G G RMG+FA++G GK++L+ M+  +T+ADV+V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  204  REVKEFIEDILGVEGRSRavvvaapadapaLTRIRGARLATAMAEYYRDQGLNVLLLMDS  263
            REV EF++ + + + + + V+V A +D P++ R  +A+LAT++AEY+RDQG  V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  264  VTRYALALREVALAAGEPPAARGFPPSVFAKLPALVERAGNGPEGGGSITAFYTVLMEGD  323
            +TRYA ALR+VALA+GE PA RG+P+SVF +LP L+ER+G  +E  GSITAFYTVL+E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESE  308

Query  324  DQQDPVADNVRAILDGHIVLSRRLAEQGHFPAIDLQASISRVMPAIATPLELRRMQKLKE  383
            ++ DP+AD++R+ILDGH+ LSR+LA QGH+PAID+  S+SRV   ++TP +  +   ++ 
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  384  MQSRYASQQDLIAVGAYTPGADLQLDQAVQAHAGIREFLIQ  424
            + +R    Q +I +G Y PG +++ D+A+Q + +++  L Q
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQ  409

339) fliI in NC_018866


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 170/420 (41%), Positives = 288/420 (69%), Gaps = 11/420 (2%)

Query  25   KISGLLVEADGPRASVGKYCHIM-ASNSKAI--PAEVAGFRGTKTLLMPLGELEGVAPGD  81
            KI+G ++EA+    ++G  C+I  + + K +   A+V G++  +T+L  +G+ +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  82   KVIPQDETLNVKVGPELLGRILDGLGQPLD-----GRPLNTDQSYPLHNKPPSALFRPRI  136
             + P + +L+  VG  +LG +LD  G+ ++       P++ ++   ++  PPS   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV--IDVAPPSYASRVGV  132

Query  137  CEPLNVGVRGIDGLLTMGRGQRMGIFAGSGVGKSTLLGMMARNSEADVNVIALVGERGRE  196
             EPL  GVR+IDGLLT G GQRMGIFA++G GK+ L+ M+  ++EADV VI+L+GERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  197  LRDFMEKDLGEEGLSRSVIVVATSDQPALVRMKAAFTATAVAEYFRDKGKNVLFMMDSVT  256
            + +F++   + +   + V+V ATSD P++ R +AA  AT+VAEYFRD+GK V++ +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  257  RFAMAQREIGLTVGEPPATRGYPPSVFAMLPKLLERVGLSEKGSITGIYTVLVDGDDHNE  316
            R+A A R+++L+ GE PA RGYP+SVF  LP+LLER G +  GSIT++YTVL++++++ +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  317  PIADAVRGILDGHIVLTRELASKNHYPSIDILQSISRLMSDVADPQVRELAGKIREHLAV  376
            P+AD +R+ILDGH+ L+R LA++ HYP+ID+L+S+SR+ ++V+ P   E A+ +R  ++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  377  YHEAKDLIDIGAYVAGSSSRIDQAIKHHEKIRAFVCQNTDEKCCFAEMLSFMKNVFEEGD  436
             +E + +ID+G Y +G +   D+A++ ++ ++A +CQ   +   F + LS M N F + +
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM-NAFADQN  431

340) fliI in NC_018867


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  256 bits (957),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 170/420 (41%), Positives = 288/420 (69%), Gaps = 11/420 (2%)

Query  25   KISGLLVEADGPRASVGKYCHIM-ASNSKAI--PAEVAGFRGTKTLLMPLGELEGVAPGD  81
            KI+G ++EA+    ++G  C+I  + + K +   A+V G++  +T+L  +G+ +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  82   KVIPQDETLNVKVGPELLGRILDGLGQPLD-----GRPLNTDQSYPLHNKPPSALFRPRI  136
             + P + +L+  VG  +LG +LD  G+ ++       P++ ++   ++  PPS   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV--IDVAPPSYASRVGV  132

Query  137  CEPLNVGVRGIDGLLTMGRGQRMGIFAGSGVGKSTLLGMMARNSEADVNVIALVGERGRE  196
             EPL  GVR+IDGLLT G GQRMGIFA++G GK+ L+ M+  ++EADV VI+L+GERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  197  LRDFMEKDLGEEGLSRSVIVVATSDQPALVRMKAAFTATAVAEYFRDKGKNVLFMMDSVT  256
            + +F++   + +   + V+V ATSD P++ R +AA  AT+VAEYFRD+GK V++ +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  257  RFAMAQREIGLTVGEPPATRGYPPSVFAMLPKLLERVGLSEKGSITGIYTVLVDGDDHNE  316
            R+A A R+++L+ GE PA RGYP+SVF  LP+LLER G +  GSIT++YTVL++++++ +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  317  PIADAVRGILDGHIVLTRELASKNHYPSIDILQSISRLMSDVADPQVRELAGKIREHLAV  376
            P+AD +R+ILDGH+ L+R LA++ HYP+ID+L+S+SR+ ++V+ P   E A+ +R  ++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  377  YHEAKDLIDIGAYVAGSSSRIDQAIKHHEKIRAFVCQNTDEKCCFAEMLSFMKNVFEEGD  436
             +E + +ID+G Y +G +   D+A++ ++ ++A +CQ   +   F + LS M N F + +
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM-NAFADQN  431

341) fliI in NC_002967


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  256 bits (958),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 277/416 (67%), Gaps = 6/416 (1%)

Query  26   RVHDKLIESEGPVASVGELCQIITDDNPDGL--KAEVVGLNGTIVQLMSYTDVQGVKIGD  83
            ++ + +IE+E    ++GELC+I  + +   +  +A+VVGL+     L    + QG+  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  84   LVIASGEILSVPVGNILLGRVVDALCKSAD---GKPEPYSAKRYPVVASPPDAMTRKPIR  140
            ++ ++G  LS  VG  +LG V+D+  K  +       P S  R  +  +PP   +R  +R
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER-VIDVAPPSYASRVGVR  133

Query  141  QRIVTGIRAIDSLLAVGRGQRLGIFAGTGIGKSTLLGMIARNTNADVNVIALIGERGREV  200
            + ++TG+RAID+LL+ G GQR+GIFA++G GK+ L+ M+  +T+ADV VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  201  LDFIEHDLGPEGLKHSVIVSATSDQSALARIRGAYTATAIAEYFRDQGKDVMLLFDSVTR  260
             +F++   +++     V+V ATSD +++ R  +A  AT++AEYFRDQGK V+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  261  FAMAQREIGLAIGEPPATRGYTPSVFSSLPKLLERSGTSEKGSITGFYTVLVEGDDMNEP  320
            +A A R+++LA GE PA RGY +SVF +LP+LLER+G++  GSIT+FYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  321  ISDAVRGILDGHIVLDRNLAERGQYPAVNVLKSISRLSNRVSGPNTKDASKRMRTLLKDY  380
            ++D +R+ILDGH+ L R+LA +G+YPA++VLKS+SR+  +V+ P   + +  +R L+   
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  381  TESEDMINLGAYQKGSSAAIDDAIDHYPRIYDFLTQEVDDPAKLKDTLQKLSDITG  436
             E +  I+LG Y+ G +   D A++    +   L Q V + + + DTL  ++ +++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

342) hrcN in NC_014310


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  256 bits (955),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 185/417 (45%), Positives = 285/417 (69%), Gaps = 13/417 (3%)

Query  15   RTTPLIRRFGKVVEVTGTLLRVGGVDVRLGELCTLTE--PDGTVMQEGEVVGFSEHFALV  72
            +T  L++ ++    +TG ++     DV +GELC +     +  V+  ++VVG+  + +++
Sbjct  2    KTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVL  61

Query  73   APFGGVTGLSRSTRVVPSGRALSVGIgpgllgrvldglgrpADG-GPPLEVVDYVPVFAN  131
            + +G   GLSR   + P+GRALS  +G ++LG VLD  G+  +   P +  +    V+  
Sbjct  62   SLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV  121

Query  132  APDPMTRRL-VEQPLATGVRVIDGLATLAEGQRMGIFAPAGVGKSTLMGMFARGTDCDVN  190
            AP + + R+ V +PL TGVR IDGL T + GQRMGIFA+AG GK+ LM M+   T+ DV 
Sbjct  122  APPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVF  181

Query  191  VIVLIGERGREVREFIEQILGEEGMRRSVVVCATSDRSAVERAKAAYVGTAVAEYFRDQG  250
            VI LIGERGREV EF++ + + +   + V+V ATSD ++V+R +AA ++T+VAEYFRDQG
Sbjct  182  VIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQG  241

Query  251  LRVLLMMDSLTRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMSAAGSITALY  310
             RV+L +DS+TR+ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G ++ GSITA+Y
Sbjct  242  KRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFY  301

Query  311  TVLAEDESGNDPVAEEVRGILDGHLILSRDIAARNRYPAIDILNSLSRVMTQVMPREHCD  370
            TVL E E   DP+A+E+R+ILDGHL LSR +A++ +YPAID+L+S+SRV  QV    H +
Sbjct  302  TVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAE  361

Query  371  AAGRMRQLLAKYNEVETLLQMGEYKEGSDPVADAAVQWNDWMESFLRQRTDEW-CSP  426
             A+ +R+L+++ +E++ ++++GEY+ G +   D A+Q        +R+    W C P
Sbjct  362  QASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ--------MRDSLKAWLCQP  410

343) fliI in NC_010674


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  256 bits (955),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 170/415 (41%), Positives = 276/415 (67%), Gaps = 10/415 (2%)

Query  20   YTEGVVNKVIGLTVEVKGIKAFVGELCII---YNEKNAPVNCEVVGFKDGFVVLMPLDEL  76
            Y + +   +I    E++++   +GELC I    ++K+     +VVG++    VL  +++ 
Sbjct  12   YPQKITGPIIE--AELRDVA--IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNA  67

Query  77   IGISPGCRVVPMRKPLSVKCSDKLLGEIIDGLGK---PLRGEELVQGEDYPLENNPPDPL  133
             G+S +  + P  ++LS   +  +LG ++D  GK    +  E    +E+  ++  PP   
Sbjct  68   QGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA  127

Query  134  KRKRIKEIMPTGIRAIDGFLTCGDGQRIGIFAGSGVGKSTTLGMIAREAKADVNVIALIG  193
             R  ++E + TG+RAIDG+LTCG GQR+GIFA++G GK+  + M+  ++ ADV VI+LIG
Sbjct  128  SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIG  187

Query  194  ERGREVLEFIEKDLGPEGMKKSVVVCATSDKPALIRLKGALTATAIAEYFRDKGKKVILM  253
            ERGREV EF++   +++   K V+V ATSD P++ R ++A  AT++AEYFRD+GK+V+L 
Sbjct  188  ERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLF  247

Query  254  MDSVTRFAMAQREVGLAIGEPPATKGYTPSVFAKLPKLMEKSGTSEDGSITAFYTVLVDG  313
            +DS+TR+A A R+V+LA GE PA +GY +SVF +LP+L+E++G++ +GSITAFYTVL+++
Sbjct  248  IDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLES  307

Query  314  DDFNEPIADAVRGILDGHIVLSRSLAHKNHYPAIDILNSVSRLMNSIAPSEHIKAASIAR  373
            ++  +P+AD +R+ILDGH+ LSR LA + HYPAID+L+SVSR+   ++ + H   AS  R
Sbjct  308  EEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVR  367

Query  374  DLLATYKESEDLINIGAYVKGSNKKIDLAISYHDKIEEFLRQTVNEKSNFDESIS  428
             L++   E + +I++G Y  G N   D A+  +D +   L Q V + S+FD+++S
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

344) GTCCBUS3UF5_14130 in NC_016593


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  255 bits (954),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 268/386 (70%), Gaps = 8/386 (2%)

Query  10   RVIGLMMESKGPKSSIGDLCYIHEQSGCRKI--PAEVVGFHEQHVLLMPFSAMSHIAPGC  67
            ++ G ++E+     +IG+LC I+     +++   A+VVG++ ++ +L  ++    ++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  68   FVEATGRPLEVHVGDALIGMVLDPLGQPLDGSPLPPGLKPVSVER----DPPNPLVRPPI  123
             + +TGR+L   VG +++G VLDP G+ ++   + P + P+S ER     PP+   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  124  VEPLEVGIRVIDSLLAVGKGQRVGIFAGSGVGKSTLMGMIARHTSADVNVIALIGERGRE  183
             EPL  G+R ID+LL+ G GQR+GIFA++G GK+ LM M+  +T ADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  184  VREFLERDLGPDGLARSVVVVATSDQPALMRVKGAYTATAIAEYFRDQGADVMLMMDSVT  243
            V EF++   +++   + V+V ATSD P++ R ++A  AT++AEYFRDQG  V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  244  RVAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNASGTITAFYTVLVDGDDMNE  303
            R A A R+++LA GE P+ +GY +SVF  LP+LLER+G+ + G+ITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  304  PIADAVRGILDGHFVLERQLANKGHYPAINVLKSVSRVMPHMISAEHREAANRFRRLLST  363
            P+AD +R+ILDGH+ L R+LA +GHYPAI+VLKSVSRV  ++ ++ H E A+  R+L++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  364  YIDSEDLIQIGAYKRGSSQEIDEAIE  389
              + + +I++G Y+ G + + D A++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQ  398

345) sctN, cdsN in NC_015702


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  255 bits (951),  Expect = 5e-69, Method: Compositional matrix adjust.
 Identities = 175/405 (44%), Positives = 268/405 (67%), Gaps = 4/405 (0%)

Query  30   VGMLIKAIVPQVKIGEVCLVKR--EGEPLLT--EVVGFTREEVFLSPLGEMTGIGPSSEV  85
             G +I A + +V IGE+C ++R  +   +++  +VVG+ RE   LS +G+  G++    +
Sbjct  17   TGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVL  76

Query  86   IPTRLPLHIKVGPQLLGRVLNGLGEPLDVATKGPLELNEVYPVIQAPPDPLKRKRIVEPI  145
             PT  +L   VG  +LG VL+  G  ++  T     ++E   +  APP    R  + EP+
Sbjct  77   YPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPL  136

Query  146  SVGIRAIDGVLTTGLGQRVGIFAAAGGGKSTTLGMIARNAMADVNVISLIGERGRELRDF  205
              G+RAIDG+LT G+GQR+GIFA+AG GK+  + M+  ++ ADV VI+LIGERGRE+ +F
Sbjct  137  ITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEF  196

Query  206  IEKDLGPEGLKRSVLVVSTSDQASQLRLNAAYVGTAIAEYFRDQGKSVILMMDSVTRFAR  265
            ++   +++   + VLV +TSD +S  R NAA ++T++AEYFRDQGK V+L +DS+TR+AR
Sbjct  197  VDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYAR  256

Query  266  ALREVGLAAGEPPARAGYTPSVFSTLPKLLERTGNSDVGSITAFYTILVAGDDMNEPVAD  325
            ALR+V+LA+GE PAR GY +SVF  LP+LLER G +  GSITAFYT+L+ +++  +P+AD
Sbjct  257  ALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMAD  316

Query  326  EVRSILDGHIILSSELARQYHYPAIDVLSSASRVMPSIVPKEHLQLVGKLKEVLANYKKN  385
            E+RSILDGH+ LS  LA Q HYPAIDVL S SRV   +    H +  + ++ +++     
Sbjct  317  EIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEEL  376

Query  386  ELLIKIGEYKRGADKAGDFAIDHIDKVNKFLKQGVDEKCSYQETM  430
            +L+I +GEY+ G +   D A++  D ++  L Q V +  S+++T+
Sbjct  377  QLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

346) PSEBR_a5386 in NC_015379


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  255 bits (952),  Expect = 5e-69, Method: Compositional matrix adjust.
 Identities = 177/421 (43%), Positives = 297/421 (71%), Gaps = 10/421 (2%)

Query  33   QRVSGILLQCRLPGAQIGDLCRVERDTREPLL---AEIVGFDQHDALLSALGGLEGIRVG  89
            Q+++G +++  L +  IG+LC + R+ ++  +   A++VG++++ ++LS +G  +G+  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  90   AAVEPLGMPHRVCVGPELLGQVLDGFGRPL--LDGGTGAFAGPHVLHASEVIGEAPAPTA  147
              + P G +    VG  +LG VLD  G+ +  +    ++++  +V++ +     +P+ ++
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVA-----PPSYAS  128

Query  148  RPRIQRPLMTGVRAIDGPLTLGEGQRVGLFAGAGCGKTTLLAEIARNVDCDVIVFGLIGE  207
            R  ++ PL+TGVRAIDG LT G GQR+G+FA+AGCGKT L+  +  + + DV+V+GLIGE
Sbjct  129  RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGE  188

Query  208  RGRELREFLDHELDDELRARAVLVCATSDRSSMEraraaftatalaEGFRARGQRVLLLI  267
            RGRE+ EF+D     + + + VLV ATSD +S++R  AA  AT++AE FR +G+RV+L+I
Sbjct  189  RGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFI  248

Query  268  DSLTRFARAQREIGLAAGEPLGRGGLPPSVYGLLPRLVERAGLTNEGAITAFYTVLIEQD  327
            DS+TR+ARA R+++LA+GE  +R G P+SV++ LPRL+ER+G T+EG+ITAFYTVL+E +
Sbjct  249  DSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESE  308

Query  328  SMNDPVADEVRSLLDGHIVLSRKLAERGHYPAIDVLASLSRTLANVAEAEHLRAGINLRR  387
               DP+ADE+RS+LDGH+ LSRKLA +GHYPAIDVL S+SR +++V+ + H   +  +R+
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  388  LLSAYEQIELMLRLGEYQAGADPLTDLAVESRGALDAFLRQDLREPEPFASTLAHLQQLT  447
            L++  E+++L + LGEY++G +   D A++ R++L A L Q + +  +F  TL+ ++ ++
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFA  428

Query  448  A  448
             
Sbjct  429  D  429

347) PM3016_5159 in NC_016935


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  255 bits (951),  Expect = 6e-69, Method: Compositional matrix adjust.
 Identities = 165/393 (42%), Positives = 270/393 (69%), Gaps = 8/393 (2%)

Query  28   QVIGLTVESEGPDASIGDLCYIYPHKSNKPL--KAEVVGFKNNKVILMPLGELDSIGPGC  85
            ++ G  +E+E  D +IG+LC I     +K +  +A+VVG++ ++ +L  +G+ ++++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  86   DVVGTGKPLSVQVGHELLGKVLDGLGQPMDGSFLP---SRMAQYSTNNAPSNPLTRPRVL  142
             +  TG++LS  VG  +LG VLD  G+ ++  F P   +   +   + AP++  +R  V 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  143  EPISVGVRCIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTSADVNVIALIGERGREV  202
            EP+  GVR IDGLLT G GQR+GIFA++G GK+ LM M+  +T ADV VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  203  LDFIERDLGPEGLARSVVIVATSDQPALIRIKASLIATSIAEYFRDRGLNVMMMMDSVTR  262
             +F++   +++   + V++ ATSD P++ R +A+ +AT++AEYFRD+G  V++ +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  263  FAMAQREVGLAVGEPPATRGYTPSVFAMLPKLLERSGNGPKGSITAFYTVLVDGDDMNEP  322
            +A A R+V+LA GE PA RGY +SVF  LP+LLER+G  + GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  323  IADAVRGILDGHIVLNRAIANRGHYPAIDVLASVSRVMKEIVPKEQQLASENLKRLLATY  382
            +AD +R+ILDGH+ L+R +A +GHYPAIDVL SVSRV  ++    +   +  +++L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  383  KDSEDLVNIGAYQRGSNPEIDEALESIHSI--W  413
             + + ++++G Y+ G N + D A++  +S+  W
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAW  406

348) fliI in NC_017672


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  255 bits (951),  Expect = 6e-69, Method: Compositional matrix adjust.
 Identities = 165/393 (42%), Positives = 270/393 (69%), Gaps = 8/393 (2%)

Query  28   QVIGLTVESEGPDASIGDLCYIYPHKSNKPL--KAEVVGFKNNKVILMPLGELDSIGPGC  85
            ++ G  +E+E  D +IG+LC I     +K +  +A+VVG++ ++ +L  +G+ ++++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  86   DVVGTGKPLSVQVGHELLGKVLDGLGQPMDGSFLP---SRMAQYSTNNAPSNPLTRPRVL  142
             +  TG++LS  VG  +LG VLD  G+ ++  F P   +   +   + AP++  +R  V 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  143  EPISVGVRCIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTSADVNVIALIGERGREV  202
            EP+  GVR IDGLLT G GQR+GIFA++G GK+ LM M+  +T ADV VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  203  LDFIERDLGPEGLARSVVIVATSDQPALIRIKASLIATSIAEYFRDRGLNVMMMMDSVTR  262
             +F++   +++   + V++ ATSD P++ R +A+ +AT++AEYFRD+G  V++ +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  263  FAMAQREVGLAVGEPPATRGYTPSVFAMLPKLLERSGNGPKGSITAFYTVLVDGDDMNEP  322
            +A A R+V+LA GE PA RGY +SVF  LP+LLER+G  + GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  323  IADAVRGILDGHIVLNRAIANRGHYPAIDVLASVSRVMKEIVPKEQQLASENLKRLLATY  382
            +AD +R+ILDGH+ L+R +A +GHYPAIDVL SVSRV  ++    +   +  +++L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  383  KDSEDLVNIGAYQRGSNPEIDEALESIHSI--W  413
             + + ++++G Y+ G N + D A++  +S+  W
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAW  406

349) fliI in NC_010520


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  254 bits (947),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 275/407 (68%), Gaps = 6/407 (1%)

Query  28   RKVIGLTVEVEGIKAFVGEVCII---YNEKNQTIPCEVVGFKEENVILMPLGELIGIAPG  84
            +K+ G  +E E     +GE+C I    ++K+     +VVG++ E  +L  +G+  G++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   CKVIPQGKPLSVICSENILGKVLDGLGNPLE---GEELMEGSPYALDSDPPDPMKRRRIK  141
              + P G++LS   + ++LG VLD  G+ +E    E    +    +D  PP    R  ++
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  142  DVIPTGIKAIDGFITVGEGQRIGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREV  201
            + + TG++AIDG++T G GQR+GIFA++G GK+  + M+   +EAD+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  RDFIEKDLGEEGLKKSVIVCATSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTR  261
             +F++   + +   K V+V ATSD P++ R ++A  AT++AEYFRDQGK+V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  FAMAQREIGLAIGEPPATKGYTPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEP  321
            +A A R+++LA GE PA +GY +SVF +LPRL+ER+G ++ GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLSRSLAAKNHYPAIDILSSVSRLMSEIASKEHKNAAGMARDLLATY  381
            +AD +R+ILDGH+ LSR LA++ HYPAID+L SVSR+ +++++  H + A+  R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KNSEDLINIGAYVKGSNPKVDMAIHYHESIISFLKQGIGEHHSFKES  428
             + + +I++G Y  G N   D A++ ++S+ + L Q +++  SF ++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

350) fliI in NC_012658


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  254 bits (947),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 276/407 (68%), Gaps = 6/407 (1%)

Query  28   RKVIGLTVEVEGIKAFVGEVCII---YNEKNQTIPCEVVGFKEENVILMPLGELIGIAPG  84
            +K+ G  +E E     +GE+C I    ++K+     +VVG++ E  +L  +G+  G++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   CKVIPQGKPLSVICSENILGKVLDGLGNPLE---GEELMEGSPYALDSDPPDPMKRRRIK  141
              + P G++LS   + ++LG VLD  G+ +E    E    +    +D  PP    R  ++
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  142  DVIPTGIKAIDGFITVGEGQRIGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREV  201
            + + TG++AIDG++T G GQR+GIFA++G GK+  + M+   +EAD+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  RDFIEKDLGEEGLKKSVIVCATSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTR  261
             +F++   + +   K V+V ATSD P++ R ++A  AT++AEYFRDQGK+V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  FAMAQREIGLAIGEPPATKGYTPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEP  321
            +A A R+++LA GE PA +GY +SVF +LPRL+ER+G ++ GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLSRSLAAKNHYPAIDILSSVSRLMSEIASKEHKDAAGMARDLLATY  381
            +AD +R+ILDGH+ LSR LA++ HYPAID+L SVSR+ +++++  H + A+  R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KNSEDLINIGAYVKGSNPKVDMAIHYHESILSFLKQGIGEQHSFEES  428
             + + +I++G Y  G N   D A++ ++S+ + L Q +++  SF+++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

351) fliI in NC_017297


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  254 bits (947),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 166/407 (41%), Positives = 276/407 (68%), Gaps = 6/407 (1%)

Query  28   RKVIGLTVEVEGIKAFVGEVCII---YNEKNQTIPCEVVGFKEENVILMPLGELIGIAPG  84
            +K+ G  +E E     +GE+C I    ++K+     +VVG++ E  +L  +G+  G++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   CKVIPQGKPLSVICSENILGKVLDGLGNPLE---GEELMEGSPYALDSDPPDPMKRRRIK  141
              + P G++LS   + ++LG VLD  G+ +E    E    +    +D  PP    R  ++
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  142  DVIPTGIKAIDGFITVGEGQRIGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREV  201
            + + TG++AIDG++T G GQR+GIFA++G GK+  + M+   +EAD+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  RDFIEKDLGEEGLKKSVIVCATSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTR  261
             +F++   + +   K V+V ATSD P++ R ++A  AT++AEYFRDQGK+V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  FAMAQREIGLAIGEPPATKGYTPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEP  321
            +A A R+++LA GE PA +GY +SVF +LPRL+ER+G ++ GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLSRSLAAKNHYPAIDVLSSVSRLMSEIASKEHKDAAGMARDLLATY  381
            +AD +R+ILDGH+ LSR LA++ HYPAIDVL SVSR+ +++++  H + A+  R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KNSEDLINIGAYVKGSNPKVDMAIHYHESILSFLKQGIGEQHSFEES  428
             + + +I++G Y  G N   D A++ ++S+ + L Q +++  SF+++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

352) fliI in NC_009699


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  254 bits (947),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 166/407 (41%), Positives = 276/407 (68%), Gaps = 6/407 (1%)

Query  28   RKVIGLTVEVEGIKAFVGEVCII---YNEKNQTIPCEVVGFKEENVILMPLGELIGIAPG  84
            +K+ G  +E E     +GE+C I    ++K+     +VVG++ E  +L  +G+  G++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   CKVIPQGKPLSVICSENILGKVLDGLGNPLE---GEELMEGSPYALDSDPPDPMKRRRIK  141
              + P G++LS   + ++LG VLD  G+ +E    E    +    +D  PP    R  ++
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  142  DVIPTGIKAIDGFITVGEGQRIGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREV  201
            + + TG++AIDG++T G GQR+GIFA++G GK+  + M+   +EAD+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  RDFIEKDLGEEGLKKSVIVCATSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTR  261
             +F++   + +   K V+V ATSD P++ R ++A  AT++AEYFRDQGK+V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  FAMAQREIGLAIGEPPATKGYTPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEP  321
            +A A R+++LA GE PA +GY +SVF +LPRL+ER+G ++ GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLSRSLAAKNHYPAIDVLSSVSRLMSEIASKEHKDAAGMARDLLATY  381
            +AD +R+ILDGH+ LSR LA++ HYPAIDVL SVSR+ +++++  H + A+  R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KNSEDLINIGAYVKGSNPKVDMAIHYHESILSFLKQGIGEQHSFEES  428
             + + +I++G Y  G N   D A++ ++S+ + L Q +++  SF+++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

353) fliI in NC_006177


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  254 bits (950),  Expect = 7e-69, Method: Compositional matrix adjust.
 Identities = 184/430 (43%), Positives = 287/430 (67%), Gaps = 12/430 (2%)

Query  13   VELLPVVGRVTGAAGLIIESAGPRAKMNELC-----WLQGDGRRVPAEVVGFREDRLLLM  67
            ++ L+   ++TG+   IIE+      + ELC     W Q +     A+VVG++ +R +L 
Sbjct  7    LQYLAYPQKITGP---IIEAELRDVAIGELCEIRRGWHQKQVV-ARAQVVGLQRERTVLS  62

Query  68   PLGETDGLRPGWDVIATGGPLQAPVGMGLLGRVIDGLGNPIDDKGPLMG--CGFRPILGP  125
             +G+++GL  +  + +TG +L A VG ++LG V+D  G+ ++   P ++     R I  +
Sbjct  63   LIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVA  122

Query  126  APDPLARQRIHRPLSLGVRALDALITVGMGQRIGIFAGSGVGKSTLLGMVARATAADCNV  185
            +P   +R  ++ PL  GVRA+D+L+T G+GQR+GIFA++G GK+ L+ M+   T AD  V
Sbjct  123  PPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFV  182

Query  186  IALVGERGREVREFIEKDLGEEGLRRSVVVVATSEQPSLVRIRAALMATAIAEYFRDAHG  245
            I+L+GERGREV EF++   + +   + V+V ATS+ PS+ R  AA +AT++AEYFRD +G
Sbjct  183  IGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRD-QG  241

Query  246  LDVILMMDSVTRLAHAQREVGLAVGEPPATRGYTPSVFAMLPRVLERSGTGPAGSVTGVY  305
              V+L +DS+TR A+A R+V+LA GE PA RGY +SVF  LPR+LER+G+ + GS+T+ Y
Sbjct  242  KRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFY  301

Query  306  TVLVDGDDMNEPVADAVRSILDGHVVLSRKLANAGHYPAIDPLQSVSRVMPDVTTPEHRK  365
            TVL+++++  +P+AD +RSILDGH+ LSRKLA  GHYPAID L+SVSRV  +VTTP H  
Sbjct  302  TVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAE  361

Query  366  QAQRLRALLSAYQEAEDLIQIGAYQQGTNPLVDEALAKMDQIKRFLIQPADQPSTMEEAL  425
            QA  +R L++  +E + +I++G Y+ G N   D A+   D +K  L QP  Q S+ +++L
Sbjct  362  QASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

Query  426  RGLAALCGED  435
             G+ A+ +++
Sbjct  422  SGMNAFADQN  431

354) fliI in NC_016943


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  254 bits (949),  Expect = 8e-69, Method: Compositional matrix adjust.
 Identities = 174/395 (45%), Positives = 273/395 (70%), Gaps = 7/395 (1%)

Query  37   SAAVGDLVEIDPT--GKPLLA--EVVAVGRDRLTCMPL-GGLSGVHAGAPVRATGRPLQV  91
              A+G+L EI      K ++A  +VV++ R+R T ++L G   G+  +  + +TGR+L  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRER-TVLSLIGNAQGLSRDVVLYPTGRALSA  85

Query  92   PVGEALLGRVLDGLGRPVDG-GPPLGGLASWVDLETRTPHALSRARVAEPLTFGVRALDT  150
             VG ++LG VLD  G+ V+   P ++ ++    ++   P   SR  V EPL  GVRA+D 
Sbjct  86   WVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  151  LVPCGKGQRLGIFAGSGVGKSSLLAQITRGTDADVRVIGLIGERGREVREFIEENLGPEG  210
            L+ CG GQR+GIFA++G GK+ L+  +   T+ADV VIGLIGERGREV EF++   +++ 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  211  MARTVVVVATSDEPPLVRLKAAFVATRIAEAFRDEGRDVLLLMDSITRTAMAQREVGLSA  270
              + V+V ATSD P++ R +AA +AT +AE FRD+G+ V+L++DS+TR A A R+V+L++
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  271  GEPPATRGYPPSVFAMMPQLLEKAGTGATGSITGLYTVLVEGDDHNEPIADTARSILDGH  330
            GE PA RGYP+SVF  +P+LLE++G+ + GSIT++YTVL+E++++ +P+AD  RSILDGH
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  331  VVLTRTLATTGHFPAIDVLESISRVAGAVVPPAQMADAREVRRLMGALRDVRELIEIGAY  390
            + L+R LA  GH+PAIDVL S+SRV G V  P++  +A  VR+LM  L +++ +I++G Y
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  391  QAGSDPLVDRARQLAPTIDAFLQQPMGESTPPAEA  425
            ++G +   DRA Q+  ++ A L QP+++ ++  ++
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

355) fliI in NC_021745


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  254 bits (949),  Expect = 8e-69, Method: Compositional matrix adjust.
 Identities = 185/417 (45%), Positives = 286/417 (69%), Gaps = 13/417 (3%)

Query  15   RTTPLIRRFGKVVEVTGTLLRVGGVDVRLGELCTLTEA--DGTVMQEGEVVGFSEHFALV  72
            +T  L++ ++    +TG ++     DV +GELC +  +  +  V+  ++VVG+  + +++
Sbjct  2    KTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVL  61

Query  73   APFSGVTGLSRSTRVVPSGRALSVGIgpgllgrvldglgrpADG-GPPLDVVEYVPVFAN  131
            + ++   GLSR   + P+GRALS  +G ++LG VLD  G+  +   P +  +    V+  
Sbjct  62   SLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV  121

Query  132  APDPMTRRL-VEHPLATGVRVIDGLATLAEGQRMGIFAPAGVGKSTLMGMFARGTECDVN  190
            AP + + R+ V +PL TGVR IDGL T + GQRMGIFA+AG GK+ LM M+   TE DV 
Sbjct  122  APPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVF  181

Query  191  VIVLIGERGREVREFIEQILGEEGMRRSVVVCATSDRSAVERAKAAYVGTAVAEYFRDQG  250
            VI LIGERGREV EF++ + + +   + V+V ATSD ++V+R +AA ++T+VAEYFRDQG
Sbjct  182  VIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQG  241

Query  251  LRVLLMMDSLTRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMSAAGSITALY  310
             RV+L +DS+TR+ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G ++ GSITA+Y
Sbjct  242  KRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFY  301

Query  311  TVLAEDESGNDPVAEEVRGILDGHLILSRDIAARNRYPAIDILNSLSRVMTQVMPRDHCD  370
            TVL E E   DP+A+E+R+ILDGHL LSR +A++ +YPAID+L+S+SRV  QV    H +
Sbjct  302  TVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAE  361

Query  371  AAGRMRQLLAKYNEVETLLQMGEYKEGSDPVADAAVQWNDWMESFLRQRTDEW-CSP  426
             A+ +R+L+++ +E++ ++++GEY+ G +   D A+Q        +R+    W C P
Sbjct  362  QASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ--------MRDSLKAWLCQP  410

356) hrcN in NC_003296


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  254 bits (949),  Expect = 8e-69, Method: Compositional matrix adjust.
 Identities = 185/417 (45%), Positives = 286/417 (69%), Gaps = 13/417 (3%)

Query  15   RTTPLIRRFGKVVEVTGTLLRVGGVDVRLGELCTLTEA--DGTVMQEGEVVGFSEHFALV  72
            +T  L++ ++    +TG ++     DV +GELC +  +  +  V+  ++VVG+  + +++
Sbjct  2    KTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVL  61

Query  73   APFSGVTGLSRSTRVVPSGRALSVGIgpgllgrvldglgrpADG-GPPLDVVEYVPVFAN  131
            + ++   GLSR   + P+GRALS  +G ++LG VLD  G+  +   P +  +    V+  
Sbjct  62   SLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV  121

Query  132  APDPMTRRL-VEHPLATGVRVIDGLATLAEGQRMGIFAPAGVGKSTLMGMFARGTECDVN  190
            AP + + R+ V +PL TGVR IDGL T + GQRMGIFA+AG GK+ LM M+   TE DV 
Sbjct  122  APPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVF  181

Query  191  VIVLIGERGREVREFIEQILGEEGMRRSVVVCATSDRSAVERAKAAYVGTAVAEYFRDQG  250
            VI LIGERGREV EF++ + + +   + V+V ATSD ++V+R +AA ++T+VAEYFRDQG
Sbjct  182  VIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQG  241

Query  251  LRVLLMMDSLTRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMSAAGSITALY  310
             RV+L +DS+TR+ARA R+++LA+GE P+RRG+P+SVF +LPRLLER+G ++ GSITA+Y
Sbjct  242  KRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFY  301

Query  311  TVLAEDESGNDPVAEEVRGILDGHLILSRDIAARNRYPAIDILNSLSRVMTQVMPRDHCD  370
            TVL E E   DP+A+E+R+ILDGHL LSR +A++ +YPAID+L+S+SRV  QV    H +
Sbjct  302  TVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAE  361

Query  371  AAGRMRQLLAKYNEVETLLQMGEYKEGSDPVADAAVQWNDWMESFLRQRTDEW-CSP  426
             A+ +R+L+++ +E++ ++++GEY+ G +   D A+Q        +R+    W C P
Sbjct  362  QASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ--------MRDSLKAWLCQP  410

357) fliI in NC_008825


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  254 bits (949),  Expect = 9e-69, Method: Compositional matrix adjust.
 Identities = 175/437 (41%), Positives = 292/437 (67%), Gaps = 27/437 (6%)

Query  55   RVAGLVLEAAGIRVPVGSVCEVRM---DGQPPVLAEVVGFAADRAYLMPTGELHGLASGA  111
            +++G ++EA    V++G +CE+R    + Q    A+VVG+  +R+ L   G+ +GL+ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  112  RVVPRSTPSVAPVLGEAHHPWRRSEDRTRHLPIGDGLLGRVIDPLGMPLDRLGP-IGAVR  170
             + P          G A  +W           +G ++LG V+DP G  ++R+ P ++++ 
Sbjct  75   VLYPT---------GRALSAW-----------VGYSVLGAVLDPTGKIVERFTPEVAPIS  114

Query  171  NEPLVR-RPINAMERDPVREPLDTGVRAINAMLTVGRGQRIGLFAGSGVGKSVLLGMMAK  229
            +E ++   P +   R  VREPL TGVRAI+++LT G GQR+G+FA++G GK++L+ M+  
Sbjct  115  EERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIE  174

Query  230  YTAADVIVVGLIGERGREVKEFIEDILGEEGLKRSIVVAAPADSPPLTRMQGAAYATAIA  289
             T ADV+V+GLIGERGREV EF++ + + +   + ++V A +D P++ R ++A  AT++A
Sbjct  175  QTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVA  234

Query  290  EHFRDRGQHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSCFAKLPQLVERSGNGLN  349
            E FRD+G++V+L++DS+TRYA A R++ALA GE PA +GYP+S F +LP+L+ER+G   +
Sbjct  235  EYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE  294

Query  350  GCGSITAFYTVLSEGDDQQDPIADAARAILDGHIVLSRDLAESGHYPAIDIERSASRVMH  409
              GSITAFYTVL E++++ DP+AD  R+ILDGH+ LSR LA  GHYPAID+ +S SRV  
Sbjct  295  --GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFG  352

Query  410  NVARPEHLQAARRLRQLWSRYQKARDLIALGAYAPGHDVELDLAVKQHDAMRTLLQQDMH  469
            +V+ P H + A  +R+L +R +  + +I LG Y PG++++ D A++ +D++++ L Q + 
Sbjct  353  QVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVA  412

Query  470  DASRLTDSVRQLRQLTG  486
            + S + D++  +  +++
Sbjct  413  QYSSFDDTLSGMNAFAD  429

358) TherJR_1539 in NC_014152


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  253 bits (946),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 168/409 (42%), Positives = 276/409 (68%), Gaps = 8/409 (1%)

Query  25   QIIGLVVESQGPSANLGELCYIYP--NVGDCKLKAEVVGFKENRILLMPLGDLTGIGPGC  82
            +I G ++E++     +GELC I    +  +   +A+VVG++ +R +L  +G+  G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  83   EVVATGHSFKIGVSSKMLGRVIDGLGNPID----GLGPIEWETEYPVSGPPPNPLERKRI  138
             + +TG+++   V+  +LG V+D  G+ ++     ++PI    E  +  +PP+   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPIS--EERVIDVAPPSYASRVGV  132

Query  139  TEPLSVGVKAVDGLLTCGKGQRVGIFSGSGVGKSTLLGMIARNTAADINVIALIGERGRE  198
             EPL  GV+A+DGLLTCG GQR+GIF+++G GK+ L+ M+  +T AD+ VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  199  VREFLEKDLGEEGLRRSVVVVATSDQPALVRLKGALVATSIAEYFRDQGKDVMLMMDSVT  258
            V EF++   + +   + V+V ATSD P++ R ++A +AT++AEYFRDQGK V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  259  RFAMAQREVGLAVGEPPATRGYTPSVFALLPKLLERSGTSRHGTITGLYTVLVDGDDHNE  318
            R+A A R+V+LA GE PA RGY +SVF  LP+LLER+G++ +G+IT++YTVL++++++ +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  319  PIADAVRGILDGHIVLSRDLAMQNQYPAIDILASVSRVMPDIVSEEHRKAAQEIKSILAT  378
            P+AD +R+ILDGH+ LSR LA Q +YPAID+L SVSRV  ++ +  H   A  ++ +++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  379  YRDAKDLIDIGAYHKGSNPKIDYALSKLDDTLNFLKQDVKEHYGFNEAL  427
              + + +ID+G Y+ G N   D A+   D     L Q V +  +F+++L
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

359) Tnap_0848 in NC_013642


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  253 bits (946),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 171/413 (42%), Positives = 273/413 (67%), Gaps = 12/413 (2%)

Query  26   RVVGLTVESKGPDAFLGEMCKI---SLQNGKNALAEVVGFREESVILMPYEDVSGLKMGC  82
            ++ G  +E+   D  +GE+C I     Q+   A A+VVG++ E  +L    +  GL  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  83   EVIRTNKVLEVGVSRKMIGRVFDGLGRPIDGKPFVPEDRYPLTNN------PPNPLKRRR  136
             +  T + L   V+  ++G V+D  G+ ++   F PE   P++++      PP+   R  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVA-PISEERVIDVAPPSYASRVG  131

Query  137  IKDPLPVGIRSIDGLITVGKGQRIGIFAGSGVGKSTLLGMIARNTTADVNVLALIGERGR  196
            +++PL  G+R+IDGL+T G GQR+GIFA++G GK+ L+ M+  +T ADV V++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  197  EVREFIERDLGEEGLKRSILVVSTSDQPALARVKSLLTATSIAEFFRDLGYDVLLMVDSL  256
            EV EF++   + +   + +LV +TSD P++ R ++   AT++AE+FRD G  V+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  257  TRWAMAQREVGLAVGEPPTTRGYPPSVFAGLPKILERAGNSDKGSITAIYTVLVEADDFN  316
            TR A A R+V+LA GE P+ RGYP+SVF  LP++LER+G +  GSITA+YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  317  EPISDTVRSIVDGHIILSRRLAESNHYPAVDVLASVSRLMNDIVTEEHREAANRLRSLMS  376
            +P++D +RSI+DGH+ LSR+LA   HYPA+DVL SVSR+  ++ T  H E A+ +R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  377  AYESAKDLIEIGAYKSGTNPLVDKAVEMKDEIDSFLKQGVFEKSSFEETLQKL  429
              E  + +I++G Y++G N   D+A++M+D + + L Q V + SSF++TL  +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

360) Tpet_0706 in NC_009486


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  253 bits (946),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 171/413 (42%), Positives = 272/413 (66%), Gaps = 12/413 (2%)

Query  15   RVVGLTVESKGPDAFLGEMCKI---SLQNGKNALAEVVGFREESVILMPYEDVSGLKMSC  71
            ++ G  +E+   D  +GE+C I     Q+   A A+VVG++ E  +L    +  GL    
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  72   EVIRTNKVLEVGVSRKMIGRVFDGLGRPIDGKPFVPEDRYPLTNN------PPNPLKRRR  125
             +  T + L   V+  ++G V+D  G+ ++   F PE   P++++      PP+   R  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVA-PISEERVIDVAPPSYASRVG  131

Query  126  IKDPLPVGIRSIDGLITVGKGQRIGIFAGSGVGKSTLLGMIARNTTADVNVLALIGERGR  185
            +++PL  G+R+IDGL+T G GQR+GIFA++G GK+ L+ M+  +T ADV V++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  186  EVREFIERDLGEEGLKRSILVVSTSDQPALARVKSLLTATSIAEFFRDLGYDVLLMVDSL  245
            EV EF++   + +   + +LV +TSD P++ R ++   AT++AE+FRD G  V+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  246  TRWAMAQREVGLAVGEPPTTRGYPPSVFAGLPKILERAGNSDKGSITAIYTVLVEADDFN  305
            TR A A R+V+LA GE P+ RGYP+SVF  LP++LER+G +  GSITA+YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  306  EPISDTVRSIVDGHIILSRRLAESNHYPAVDVLASVSRLMNDIVTEEHREAANRLRSLMS  365
            +P++D +RSI+DGH+ LSR+LA   HYPA+DVL SVSR+  ++ T  H E A+ +R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  366  AYESAKDLIEIGAYKSGTNPLVDKAVEMKDEIDSFLKQGVFEKSSFEETLQKL  418
              E  + +I++G Y++G N   D+A++M+D + + L Q V + SSF++TL  +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

361) fliI in NC_009495


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  253 bits (946),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 276/407 (68%), Gaps = 6/407 (1%)

Query  28   RKVIGLTVEVEGIKAFVGEVCII---YNEKNQTIPCEVVGFKEENVILMPLGELIGIAPG  84
            +K+ G  +E E     +GE+C I    ++K+     +VVG++ E  +L  +G+  G++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   CKVIPQGKPLSVICSENILGKVLDGLGNPLE---GEELMEGSPYALDSDPPDPMKRRRIK  141
              + P G++LS   + ++LG VLD  G+ +E    E    +    +D  PP    R  ++
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  142  DVIPTGIKAIDGFITVGEGQRIGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREV  201
            + + TG++AIDG++T G GQR+GIFA++G GK+  + M+   +EAD+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  RDFIEKDLGEEGLKKSVIVCATSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTR  261
             +F++   + +   K V+V ATSD P++ R ++A  AT++AEYFRDQGK+V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  FAMAQREIGLAIGEPPATKGYTPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEP  321
            +A A R+++LA GE PA +GY +SVF +LPRL+ER+G ++ GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLSRSLAAKNHYPAIDILSSVSRLMSEIASKEHKNAAGVARDLLATY  381
            +AD +R+ILDGH+ LSR LA++ HYPAID+L SVSR+ +++++  H + A+  R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KNSEDLINIGAYVKGSNPKVDMAIHYHESILSFLKQGISEQHSFEES  428
             + + +I++G Y  G N   D A++ ++S+ + L Q +++  SF+++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

362) fliI in NC_015690


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  253 bits (945),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 167/394 (43%), Positives = 270/394 (69%), Gaps = 10/394 (2%)

Query  28   QVIGLTVESEGPDASIGDLCYIYPHKSNKPL--KAEVVGFKNNKVILMPLGELDSIGPGC  85
            ++ G  +E+E  D +IG+LC I     +K +  +A+VVG++ ++ +L  +G+ ++++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  86   DVVGTGKPLSVQVGHELLGKVLDGLGQPMDGSFLPSRMAQYSTNN----APSNPLTRPRV  141
             +  TG++LS  VG  +LG VLD  G+ ++  F P  +A  S +     AP++  +R  V
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE-RFTPE-VAPISEERVIDVAPPSYASRVGV  132

Query  142  LEPISVGVRCIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTSADVNVIALIGERGRE  201
             EP+  GVR IDGLLT G GQR+GIFA++G GK+ LM M+  +T ADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  202  VLDFIERDLGPEGLARSVVIVATSDQPALIRIKASLIATSIAEYFRDRGLNVMMMMDSVT  261
            V +F++   +++   + V++ ATSD P++ R +A+ +AT++AEYFRD+G  V++ +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  262  RFAMAQREVGLAVGEPPATRGYTPSVFAMLPKLLERSGNGPKGSITAFYTVLVDGDDMNE  321
            R+A A R+V+LA GE PA RGY +SVF  LP+LLER+G  + GSITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  322  PIADAVRGILDGHIVLNRAIANRGHYPAIDVLASVSRVMKEIVPKEQQLASENLTRLLAT  381
            P+AD +R+ILDGH+ L+R +A +GHYPAIDVL SVSRV  ++    +   +  + +L++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  382  YKDSEDLVNIGAYQRGSNPEIDEALESIHSI--W  413
              + + ++++G Y+ G N + D A++  +S+  W
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAW  406

363) fliI in NC_012563


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  253 bits (944),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 276/407 (68%), Gaps = 6/407 (1%)

Query  28   RKVIGLTVEVEGIKAFVGEVCII---YNEKNQTIPCEVVGFKEENVILMPLGELIGIAPG  84
            +K+ G  +E E     +GE+C I    ++K+     +VVG++ E  +L  +G+  G++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   CKVIPQGKPLSVICSENILGKVLDGLGNPLE---GEELMEGSPYALDSDPPDPMKRRRIK  141
              + P G++LS   + ++LG VLD  G+ +E    E    +    +D  PP    R  ++
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  142  DVIPTGIKAIDGFITVGEGQRIGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREV  201
            + + TG++AIDG++T G GQR+GIFA++G GK+  + M+   +EAD+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  RDFIEKDLGEEGLKKSVIVCATSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTR  261
             +F++   + +   K V+V ATSD P++ R ++A  AT++AEYFRDQGK+V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  FAMAQREIGLAIGEPPATKGYTPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEP  321
            +A A R+++LA GE PA +GY +SVF +LPRL+ER+G ++ GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLSRSLAAKNHYPAIDILSSVSRLMSEIASKEHKNAAGMARDLLATY  381
            +AD +R+ILDGH+ LSR LA++ HYPAID+L SVSR+ +++++  H + A+  R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KNSEDLINIGAYVKGSNPKVDMAIHYHESILSFLKQGISEQHSFEES  428
             + + +I++G Y  G N   D A++ ++S+ + L Q +++  SF+++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

364) fliI in NC_009697


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  253 bits (945),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 275/407 (68%), Gaps = 6/407 (1%)

Query  28   RKVIGLTVEVEGIKAFVGEVCII---YNEKNQTIPCEVVGFKEENVILMPLGELIGIAPG  84
            +K+ G  +E E     +GE+C I    ++K+     +VVG++ E  +L  +G+  G++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   CKVIPQGKPLSVICSENILGKVLDGLGNPLE---GEELMEGSPYALDSDPPDPMKRRRIK  141
              + P G++LS   + ++LG VLD  G+ +E    E    +    +D  PP    R  ++
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  142  DVIPTGIKAIDGFITVGEGQRIGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREV  201
            + + TG++AIDG++T G GQR+GIFA++G GK+  + M+   +EAD+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  RDFIEKDLGEEGLKKSVIVCATSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTR  261
             +F++   + +   K V+V ATSD P++ R ++A  AT++AEYFRDQGK+V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  FAMAQREIGLAIGEPPATKGYTPSVFAKLPRLMERTGMSNKGSITAFYTVLVDGDDFNEP  321
            +A A R+++LA GE PA +GY +SVF +LPRL+ER G ++ GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLSRSLAAKNHYPAIDILSSVSRLMSEIASKEHKNAAGVARDLLATY  381
            +AD +R+ILDGH+ LSR LA++ HYPAID+L SVSR+ +++++  H + A+  R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KNSEDLINIGAYVKGSNPKVDMAIHYHESILSFLKQGISEQHSFEES  428
             + + +I++G Y  G N   D A++ ++S+ + L Q +++  SF+++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

365) fliI in NC_009698


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  253 bits (945),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 275/407 (68%), Gaps = 6/407 (1%)

Query  28   RKVIGLTVEVEGIKAFVGEVCII---YNEKNQTIPCEVVGFKEENVILMPLGELIGIAPG  84
            +K+ G  +E E     +GE+C I    ++K+     +VVG++ E  +L  +G+  G++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   CKVIPQGKPLSVICSENILGKVLDGLGNPLE---GEELMEGSPYALDSDPPDPMKRRRIK  141
              + P G++LS   + ++LG VLD  G+ +E    E    +    +D  PP    R  ++
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  142  DVIPTGIKAIDGFITVGEGQRIGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREV  201
            + + TG++AIDG++T G GQR+GIFA++G GK+  + M+   +EAD+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  RDFIEKDLGEEGLKKSVIVCATSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTR  261
             +F++   + +   K V+V ATSD P++ R ++A  AT++AEYFRDQGK+V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  FAMAQREIGLAIGEPPATKGYTPSVFAKLPRLMERTGMSNKGSITAFYTVLVDGDDFNEP  321
            +A A R+++LA GE PA +GY +SVF +LPRL+ER G ++ GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLSRSLAAKNHYPAIDILSSVSRLMSEIASKEHKNAAGVARDLLATY  381
            +AD +R+ILDGH+ LSR LA++ HYPAID+L SVSR+ +++++  H + A+  R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KNSEDLINIGAYVKGSNPKVDMAIHYHESILSFLKQGISEQHSFEES  428
             + + +I++G Y  G N   D A++ ++S+ + L Q +++  SF+++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

366) fliI in NC_010516


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  253 bits (944),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 164/407 (41%), Positives = 276/407 (68%), Gaps = 6/407 (1%)

Query  28   RKVIGLTVEVEGIKAFVGEVCII---YNEKNQTIPCEVVGFKEENVILMPLGELIGIAPG  84
            +K+ G  +E E     +GE+C I    ++K+     +VVG++ E  +L  +G+  G++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   CKVIPQGKPLSVICSENILGKVLDGLGNPLE---GEELMEGSPYALDSDPPDPMKRRRIK  141
              + P G++LS   + ++LG VLD  G+ +E    E    +    +D  PP    R  ++
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  142  DVIPTGIKAIDGFITVGEGQRIGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREV  201
            + + TG++AIDG++T G GQR+GIFA++G GK+  + M+   +EAD+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  RDFIEKDLGEEGLKKSVIVCATSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTR  261
             +F++   + +   K V+V ATSD P++ R ++A  AT++AEYFRDQGK+V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  FAMAQREIGLAIGEPPATKGYTPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEP  321
            +A A R+++LA GE PA +GY +SVF +LPRL+ER+G ++ GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLSRSLAAKNHYPAIDILSSVSRLMSEIASKEHKNAAGMARDLLATY  381
            +AD +R+ILDGH+ LSR LA++ HYPAID+L SVSR+ +++++  H + A+  R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KNSEDLINIGAYVKGSNPKVDMSIHYHESILSFLKQGIGEQHSFEES  428
             + + +I++G Y  G N   D +++ ++S+ + L Q +++  SF+++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

367) EAT1b_2917 in NC_012673


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  253 bits (944),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 171/421 (41%), Positives = 285/421 (68%), Gaps = 20/421 (4%)

Query  28   RVIGLMIESNGPSAFVGERCLI--VLPSNETVE-AEVVGFNEERVLLMPYGETTQIAPGC  84
            ++ G +IE++     +GE C I      ++ V  A+VVG++ ER +L   G++  ++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  85   LVKGTGKMLQVPVGEELIGQVLDGLGR----------PLSGERLVTGKRYDVQRKPPNPL  134
            ++  TG+ L   VG  ++G VLD  G+          P+S ER++     DV   PP+  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVI-----DVA--PPSYA  127

Query  135  NRPRILDALSTGVRMIDGLLTVGKGQRVGLFAGSGVGKSTLLGMIAKRSSADINVIALIG  194
            +R  + ++L TGVR IDGLLT G GQR+G+FA++G GK+ L+ M+  ++ AD+ VI+LIG
Sbjct  128  SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIG  187

Query  195  ERGREVKEFIEKELGPEGMARSVVIVATSDQPPLVRLKGAYTATAIAEYFRDQGKEVVLM  254
            ERGREV EF++   +++   + V++ ATSD P++ R ++A  AT++AEYFRDQGK VVL 
Sbjct  188  ERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLF  247

Query  255  MDSVTRFAMAQREIGLATGEPPTSKGYTPSVFAMLPQLLERSGTAATGSITAFYTVLVDG  314
            +DS+TR+A A R+++LA+GE P+ +GY +SVF  LP+LLER+G+++ GSITAFYTVL+++
Sbjct  248  IDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLES  307

Query  315  DDMNEPIADAVRGILDGHFVMDRALANRGQFPAIHVLKSISRVMNQIASPEHKEAAQTFR  374
            ++  +P+AD +R+ILDGH+ + R LA +G++PAI+VLKS+SRV  Q+++P H E A + R
Sbjct  308  EEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVR  367

Query  375  SWLATYIDAEDLINIGAYKKGTNPAIDTAVDKYPYLLTFLKQSIEEDAAFEQTMTHLSHI  434
              ++   + + +I++G Y+ G N   D A++    L + L Q++ + ++F++T++ ++ +
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

Query  435  A  435
            A
Sbjct  428  A  428

368) fliI in NC_013260


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  252 bits (942),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 177/419 (43%), Positives = 282/419 (68%), Gaps = 8/419 (1%)

Query  15   MDKANLIRSLGKVTKVVGLVIEAVGQEAFIGELCRIRSAGRHD----VWAEVVGFHGEIL  70
            M  + L++ L+   K+ G +IEA  ++  IGELC IR  G+H+     +A+VVG++ E  
Sbjct  1    MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRR-GWHQKQVVARAQVVGLQRERT  59

Query  71   LLMPLGEIHGIRPGSEVVAAGRPFEVPVGRSMLGRVVNGLGRPIDGKAP--VEVEARCSV  128
            +L  +G+ +G+  +  + ++GR++   VG S+LG V++  G+ ++  +P    +     +
Sbjct  60   VLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVI  119

Query  129  HRQPPSPMTRAPIIEPLATGIRVIDGLLTCGKGQRVGIFAGSGVGKSTLLGMIARYTEAD  188
            +  PPS  +R  + EPL TG+R IDGLLTCG GQR+GIFA++G GK+ L+ M+   TEAD
Sbjct  120  DVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEAD  179

Query  189  VNVIALVGERGREVREFITKELGEDGLRRSVVVVATSNEPSLLRRQAAYVATAIAEYFRD  248
            V VI+L+GERGREV EF+    + +   + V+V ATS+ PS+ R +AA +AT++AEYFRD
Sbjct  180  VFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRD  239

Query  249  QGKHVLLMMDSLTRFALAQREIGLSVGEPPTTRGYPPSAFAMLPGLLERAGTADHGGSIT  308
            QGK+V+L +DS+TR+A A R+++L+ GE P+ RGYP+S F  LP LLER+G++ + GSIT
Sbjct  240  QGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE-GSIT  298

Query  309  GLYTILVEGDDMNEPVADHARAILDGHIVLTRELAERNHYPPVDFLGSVSRLMSVVAPRE  368
            ++YT+L+E+++  +P+AD+ R+ILDGH+ L+R LA + HYP++D L SVSR+ + V+   
Sbjct  299  AFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPT  358

Query  369  VRAAASKLRELLAAHRQAQDLINIGAYVSGSNPKVDEALRYMTPIEAFLRQSSDERSDF  427
                AS +R L++   + Q +I++G Y +G N   D A++   ++ A L Q+  + S F
Sbjct  359  HAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

369) Tint_1218 in NC_014153


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  252 bits (941),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 169/401 (43%), Positives = 283/401 (71%), Gaps = 15/401 (3%)

Query  33   RVRGLILEAQGLEASLGERC--RISTEQNRVID-AEVVGFNGDHVQLMALGEVQGLTPGA  89
            ++ G I+EA+  + ++GE C  R + +Q++V+  A+VVG++ ++  L  +G+ QGL+ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  90   RVHPVPGDIRIPVGPELLGRVLDGNGRPLDGDGALLASHYTTLSTQQINPLG------RA  143
             + P    +   VG  +LG VLD  G+ ++     ++++ + +S +++  ++      R 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVER----FTPEVAPISEERVIDVAPPSYASRV  130

Query  144  LVRQPLDVGVRAINALFTVGRGARMGLFAGSGVGKSVLLGMMARNTNADVIVVGLIGERG  203
             VR+PL  GVRAI++L+T G G RMG+FA++G GK++L+ M+  +T+ADV+V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  204  REVKEFIEDILGVEGRSRavvvaapadapaLTRIRGARLATAMAEYYRDQGLNVLLLMDS  263
            REV EF++ + + + + + V+V A +D P++ R  +A+LAT++AEY+RDQG  V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  264  VTRYALALREVALAAGEPPAARGFPPSVFAKLPALVERAGNGPEGGGSITAFYTVLMEGD  323
            +TRYA ALR+VALA+GE PA RG+P+SVF +LP L+ER+G  +E  GSITAFYTVL+E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESE  308

Query  324  DQQDPVADNVRAILDGHIVLSRRLAEQGHFPAIDLQASISRVMPAIATPLELRRMQKLKE  383
            ++ DP+AD++R+ILDGH+ LSR+LA QGH+PAID+  S+SRV   ++TP +  +   ++ 
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  384  MQSRYASQQDLIAVGAYTPGADLQLDQAVLAHVGIREFLIQ  424
            + +R    Q +I +G Y PG +++ D+A+  + +++  L Q
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQ  409

370) fliI in NC_005027


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  252 bits (943),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 166/408 (41%), Positives = 280/408 (69%), Gaps = 9/408 (2%)

Query  38   SVTGDAVTVQGMTAPLGAICELMPP-DAKPTLAR--VIGFDDTRPILAPMEAISALAAGD  94
             +TG  +  +    ++G +CE+    + K  +AR  V+G++  R +L+ +    +L+ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  95   rvrlvsrsltlrvGDSLCGRVIDAFGRPIDGKPLSDDLVRVSASR----AAPDSLDRPPI  150
             +   +R+L+ +VG S+ G V+D+ G+ ++   ++ ++  +S  R    A+P    R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  151  DEPLQTGVRAIDAMLTCGVGQRLGIFAGSGVGKSTLLGMLTRGTTADRIVIAMVGERGRE  210
             EPL TGVRAID++LTCGVGQR+GIFA++G GK+ L+ ML   T AD +VI+++GERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  211  VQEFMQRALGAAGLKRSVVVVATSDKPAAQRLSAAWTATAIAEKFRDEGHRVLLLVDSVT  270
            V EF++   ++    + V+V ATSD P+ +R +AA  AT++AE FRD+G RV+L++DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  271  RFAMAQRELGLAAGEPPTTRGYPPSVFNMLPQLVERAGRTTKGSITAFYTVLVEGDDNNE  330
            R+A A R+++LA+GE P+ RGYP+SVF+ LP+L+ER+G T+ GSITAFYTVL+E++++ +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  331  PISDTVRGLLDGHIVLNRKLAHRGHYPPIDIPESISRVANHLVTPETYQATLGIREHMVQ  390
            P++D +R++LDGH+ L+RKLA +GHYP+ID+  S+SRV  ++ TP   + + ++R  M +
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  391  YQTSEDLISIGAYRSGSDPRVDTAIAMRDPINDLLRQDANEITPIADS  438
             +  + +I +G YR+G +   D A+ MRD+++  L Q   + +++ D+
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

371) Cwoe_0041 in NC_013739


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  252 bits (941),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 168/395 (43%), Positives = 263/395 (67%), Gaps = 5/395 (1%)

Query  41   DLIGLVVEATGLQAEVGEICMVNGDRGHPPV--PAEVVGFRGARTLLMPLGEMHGigpat  98
             + G ++EA   +  +GE+C +  ++ +  V   A+VVG++  RT+L  +G+ +G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  99   ttratgtpfriRVGQDLLGRVIDGLGKPIDGMPRATN--GHPRSTNASPPDPLDRPRIDQ  156
               +TG ++  +VG  +LG V+D  GK ++         ++ R  + +PP    R  + +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  157  RVDLGVRALDALVPCGRGQRLGIFAGSGVGKSSLLGMIARSTTADVNVIALVGERGREVK  216
             +  GVRA+D+L+ CG GQR+GIFA++G GK+ L+ M+   T ADV VI+L+GERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  217  EFVER-DLGDALSRSVVVVATSDQPALVRIKAAFTATAIAEHFRDQGNDVMLMMDSVTRF  275
            EFV+    ++   + V+V ATSD P++ R +AA  AT++AE FRDQG+ V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  276  AMAQREVGLAIGEPPATRGYTPSVFAQLPRLLERSGTARTGSITGLYTVLVDGDDMNEPI  335
            A A R+V+LA GE PA RGY +SVF +LPRLLER+G++  GSIT++YTVL+++++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  336  ADAVRSILDGHVVLTRELAHASHYPAIDVLQSVSRLVGEIVSPEVRAAGQAVRQLMASYK  395
            AD +RSILDGH+ L+R LA  +HYPAIDVL+SVSR+ G++ +P     + AVR+LM+   
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  396  EKEDLIAIGAYQGGTDPTVDAAIALRPQLDRFLKQ  430
            E + +I +G Y+ G +   D A+ +R  L   L Q
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQ  409

372) CTC01673 in NC_004557


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  252 bits (940),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 175/419 (42%), Positives = 275/419 (66%), Gaps = 13/419 (3%)

Query  23   DYYSYEGVVKKVIGLTIEVEGIKAFIGEVCTI---YNQQNNPIVCEVVGFVEDNVILMPL  79
            +Y +Y    +K+ G  IE E     IGE+C I    +Q++     +VVG+  +  +L  +
Sbjct  8    QYLAYP---QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLI  64

Query  80   GELIGIAPGCRVIPSGNPLSVKCSEELFGKVLDGLGSPLNGEKIKTGV-PYPLDR----E  134
            G+  G++ +  + P+G +LS   +  ++G VLD  G  +  E++   V P + +R     
Sbjct  65   GNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIV--ERFTPEVAPISEERVIDVA  122

Query  135  PPDPLKRRRIKDVIPTGVRAIDGYLTCGEGQRIGIFAGSGVGKSTSLGMIAKYAEADVNV  194
            PP    R  +++ + TGVRAIDG LTCG GQR+GIFA++G GK+  + M+   +EADV V
Sbjct  123  PPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFV  182

Query  195  ICLIGERGREVLDFVEKDLGEEGMKKSIVICATSDKPALVRIKGAFTATAIAEYFRDKGK  254
            I LIGERGREV +FV+   + +   K +++ ATSD P++ R ++A  AT++AEYFRD+GK
Sbjct  183  IGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGK  242

Query  255  KVILMMDSVTRFAMAQREVGLAIGEPPATKGYTPSVFAMLPRLMERSGMSDKGSITAFYT  314
            +V+L +DS+TR+A A R+V+LA GE PA +GY +SVF  LPRL+ER+G +  GSITAFYT
Sbjct  243  RVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYT  302

Query  315  VLVDGDDFNEPIADAVRGILDGHIVLSRDLAAKNHYPAIDILSSISRLMNEISVKEHKES  374
            VL+++++  +P+AD +R+ILDGH+ LSR LA++ HYPAID+L S+SR+  +++   H E 
Sbjct  303  VLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQ  362

Query  375  ASIGRDLIATYKEAEDLINIGAYVKGSNEKIDIAIKYIDSINEFLTQKVDEHNNFEESI  433
            AS  R L++   E + +I++G Y  G N   D A++  DS++  L Q V + ++F++++
Sbjct  363  ASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

373) BC1003_3632 in NC_014540


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  251 bits (936),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 180/405 (45%), Positives = 292/405 (73%), Gaps = 4/405 (0%)

Query  54   VIGTLVKVAGLDVTLGELCELRAA--NGALLQHAEVIGFTRDVALLSPFSRLADISRSTR  111
            + G ++     DV++GELCE+R +  +  ++ +A+V+G+ R+ ++LS ++   ++SR   
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  112  VVGLGRSLTVPVGDTLLGRVIDSLGEPIDGLGP--LEATEQRPVFANPPSPMSRRMIDTP  169
            +   GR+L+  VG ++LG V+D+ G  ++ + P     +E+R +   PPS  SR  +  P
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  170  LATGVRVVDGMMTLAEGQRMGIFAPAGVGKSTLLGMFARGAQCDVAVIALIgergrevre  229
            L TGVR +DG++T + GQRMGIFA+AG GK+ L+ M+   ++ DV VI+LIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  230  fveLILGPEGMARSVVVCATSDRSSIERAKAAYVATAIAEHFRDRGQRVLLMMDSLTRFA  289
            FV+++ +++   + V+V ATSD +S++R +AA +AT++AE FRD+G+RV+L +DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  290  RAQREIGLAAGEPPARRGFPPSIFAELPRLLERAGMGEHGSITALYTVLAEDESGNDPIA  349
            RA R+++LA+GE PARRG+P+S+F +LPRLLER+G   +GSITA+YTVL E E   DP+A
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  350  EEVRGIVDGHMILSREIAAKNQYPAIDVLASLSRVMPQVMTPEYVraaarlrellaKHRE  409
            +E+R+I+DGH+ LSR +A++ +YPAIDVL S+SRV  QV TP     A+ +R L+++  E
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  410  VELLLQIGEYQPGGNPLADEAIRKIDAIRAFFNQATHELAAPQDT  454
            ++L++++GEY+PG N   D A++  D+++A + Q+  + ++ +DT
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

374) CPE3_0037 in NC_022441


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  251 bits (938),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 173/407 (43%), Positives = 273/407 (68%), Gaps = 5/407 (1%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKR--HGLEPLV-TEVVGFTQNFAFLSPLGELTGVSPASE  86
            + G +I A + +V +GE+C ++R  H  + +  ++VVG+ ++ + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VVPTGLPLHIRAGDGLLGRVLNGLGEPIDTEFKGPLVNVDETYPIFCPPPDPLHREKLRT  146
            + PTG +L  + G ++LG VL+  G  ++  F   +  + E   I  +PP    R  +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  147  ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGREV  206
             L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGREV
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREV  193

Query  207  REFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRNQGKTVVLMMDSVTR  266
             EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFR+QGK VVL +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEP  326
            +ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKY  386
            +ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  KANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
               +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

375) CPE1_0037 in NC_022439


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  251 bits (938),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 173/407 (43%), Positives = 273/407 (68%), Gaps = 5/407 (1%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKR--HGLEPLV-TEVVGFTQNFAFLSPLGELTGVSPASE  86
            + G +I A + +V +GE+C ++R  H  + +  ++VVG+ ++ + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VVPTGLPLHIRAGDGLLGRVLNGLGEPIDTEFKGPLVNVDETYPIFCPPPDPLHREKLRT  146
            + PTG +L  + G ++LG VL+  G  ++  F   +  + E   I  +PP    R  +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  147  ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGREV  206
             L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGREV
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREV  193

Query  207  REFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRNQGKTVVLMMDSVTR  266
             EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFR+QGK VVL +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEP  326
            +ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKY  386
            +ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  KANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
               +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

376) CPE2_0037 in NC_022440


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  251 bits (938),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 173/407 (43%), Positives = 273/407 (68%), Gaps = 5/407 (1%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKR--HGLEPLV-TEVVGFTQNFAFLSPLGELTGVSPASE  86
            + G +I A + +V +GE+C ++R  H  + +  ++VVG+ ++ + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VVPTGLPLHIRAGDGLLGRVLNGLGEPIDTEFKGPLVNVDETYPIFCPPPDPLHREKLRT  146
            + PTG +L  + G ++LG VL+  G  ++  F   +  + E   I  +PP    R  +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  147  ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGREV  206
             L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGREV
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREV  193

Query  207  REFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRNQGKTVVLMMDSVTR  266
             EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFR+QGK VVL +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEP  326
            +ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKY  386
            +ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  KANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
               +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

377) G5S_0335 in NC_015408


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  251 bits (938),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 173/407 (43%), Positives = 273/407 (68%), Gaps = 5/407 (1%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKR--HGLEPLV-TEVVGFTQNFAFLSPLGELTGVSPASE  86
            + G +I A + +V +GE+C ++R  H  + +  ++VVG+ ++ + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VVPTGLPLHIRAGDGLLGRVLNGLGEPIDTEFKGPLVNVDETYPIFCPPPDPLHREKLRT  146
            + PTG +L  + G ++LG VL+  G  ++  F   +  + E   I  +PP    R  +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  147  ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGREV  206
             L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGREV
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREV  193

Query  207  REFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRNQGKTVVLMMDSVTR  266
             EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFR+QGK VVL +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEP  326
            +ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKY  386
            +ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  KANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
               +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

378) Selin_2210 in NC_014836


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  251 bits (938),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 172/420 (41%), Positives = 289/420 (69%), Gaps = 10/420 (2%)

Query  15   TRTVKLIGKVTKIIGLLIESRGPASSIGDLCLIHP-INPREPLVTAEVVGFRDDVILLMP  73
             R ++ ++   KI G +IE+     +IG+LC I+   + ++ +  A+VVG++ +  +L  
Sbjct  4    PRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSL  63

Query  74   LGDLAGIGPGSRVEAMKEVFMVPVGDALVGRVLNGLGMPIDE-----QPEPECKRLYPVQ  128
            +G+  G++ +  + +    +   VG +++G VL+  G  ++       P +E  R+  ++
Sbjct  64   IGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERV--ID  120

Query  129  AAPPNPFTRKRIDTPIGTGVRAIDGLLTWGKGQRVGIFAGSGVGKSTLLGMIAKNSQADI  188
             APP+  +R  +  P+ TGVRAIDGLLT G GQR+GIFA++G GK+ L+ M+  +++AD+
Sbjct  121  VAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADV  180

Query  189  NVIALIGERGREVREFIERDLGPDGLARSVIVVATSDQPALVRRQGAYVATAIAEYFRDQ  248
             VI+LIGERGREV EF++   +++   + V+V ATSD P++ R ++A +AT++AEYFRDQ
Sbjct  181  FVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQ  240

Query  249  GKNVMFMMDSITRFCMAQREIGLAVGEPPTTKGYTPSVFALLPKLMERTGTGTGEGSISA  308
            GK V++ +DS+TR+  A R+++LA GE P+ +GY +SVF  LP+L+ER G+ T+EGSI+A
Sbjct  241  GKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-TSEGSITA  299

Query  309  LYTVLVDGDDITEPVADASRSILDGHIMLSRKLASRNHFPAIDVLGSASRVFGEITSGEH  368
            +YTVL+++++ ++P+AD  RSILDGH+ LSRKLA++ H+PAIDVL S SRVFG++T+  H
Sbjct  300  FYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTH  359

Query  369  QELAAKLRNLMAVYGDAEDLINIGAYSKGTNKEIDRAVSRMGAINSFLRQAVNESEDFGN  428
             E A+ +R+LM+   + + +I++G Y  G N + DRA+   +++++ L Q+V +   F++
Sbjct  360  AEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

379) TRQ2_0730 in NC_010483


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  251 bits (938),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 168/413 (41%), Positives = 272/413 (66%), Gaps = 12/413 (2%)

Query  26   RVVGLTVESKGPDAFLGEMCKI---SLQNGKNALAEVVGFREESVILMPYEDVSGLKMGC  82
            ++ G  +E+   D  +GE+C I     Q+   A A+VVG++ E  +L    +  GL  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  83   EVIRTNKVLEVGVSRKMIGRVFDGLGRPIDGKPFVPE------DRYPLTNTPPNPLKRRR  136
             +  T + L   V+  ++G V+D  G+ ++   F PE      +R  +  +PP+   R  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEER-VIDVAPPSYASRVG  131

Query  137  IKDPLPVGIRSIDGFITVGKGQRIGIFAGSGVGKSTLLGMIARNTTADINVLALIGERGR  196
            +++PL  G+R+IDG++T G GQR+GIFA++G GK+ L+ M+  +T AD+ V++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  197  EVREFIERDLGEEGLKRSILVVSTSDQPALARVKSLLTATSIAEFFRDLGYDVLLMVDSL  256
            EV EF++   + +   + +LV +TSD P++ R ++   AT++AE+FRD G  V+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  257  TRWAMAQREVGLAVGEPPTTRGYPPSVFAGLPKILERAGNSDKGSITAIYTVLVEADDFN  316
            TR A A R+V+LA GE P+ RGYP+SVF  LP++LER+G +  GSITA+YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  317  EPISDTVRSIVDGHIILSRRLAESNHYPAVDVLASVSRLMNDIVTEEHREAANRLRSLMS  376
            +P++D +RSI+DGH+ LSR+LA   HYPA+DVL SVSR+  ++ T  H E A+ +R LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  377  AYESAKDLIEIGAYKSGTNPLVDKAVEMKDEIDSFLKQGVFEKASFEETLQKL  429
              E  + +I++G Y++G N   D+A++M+D + + L Q V + +SF++TL  +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

380) Adeg_2041 in NC_013385


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  251 bits (937),  Expect = 8e-68, Method: Compositional matrix adjust.
 Identities = 175/403 (44%), Positives = 274/403 (68%), Gaps = 8/403 (1%)

Query  40   VGEVCLVELS-PGKYVVA--EAAGFREDVVLLMPFGELTGIRPGCRVYPRRRPFTVRVGE  96
            +GE+C +  +   K VVA  +  G++ +  +L  +G+  G+  +  +YP  R+++ +VG 
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY  89

Query  97   HLLGRVLNGLGEPIDGKPLPSGIPLP----VNNRPPSPLARRRIEEVFVTGVRAIDAFIT  152
             +LG VL+  G  ++ +  P   P++    ++  PPS  +R  + E ++TGVRAID+++T
Sbjct  90   SVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  153  CGRGQRIGIFAGSGVGKSTLLGMIARFGNADVNVIALVGERGREVLEFIEKDLGEEGLAK  212
            CG GQR+GIFA++G GK+ L+ M+    +ADV VI+L+GERGREV EF++   + +   K
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  213  SVVVVATSDEPALLRLRAAFVATTIAEYFRDTGRHVLLLMDSLTRFALAQREVGLAVGEP  272
             V+V ATSD P++ R  AA +ATT+AEYFRD G++V+L++DS+TR+A A R+V+LA GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  273  PTTRGYTPSVFALLPRLLERAGNAAKGSITGFYTVLVEGDDLNEPITDAARSILDGHIVL  332
            P+ RGY +SVF  LPRLLER+G ++ GSIT+FYTVL+E+++  +P++D  RSILDGH+ L
Sbjct  269  PARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYL  328

Query  333  SRQLAQANHYPAIDVLASVSRLMSAVVTPEHREAADLLRSLLAAYRQNEDLINIGAYVSG  392
            SR+LA   HYPAIDVL SVSR+ + V TP H E A  +R L++   + + +I++G Y +G
Sbjct  329  SRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPG  388

Query  393  SNPTVDRAIALYPELVAFLRQKPEEYTSFPECVARLKELAERG  435
             N   DRA+ +   L A L Q   +Y+SF + ++ ++ +A++ 
Sbjct  389  ENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

381) hrcN in NC_016830


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  251 bits (936),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 178/418 (43%), Positives = 291/418 (70%), Gaps = 10/418 (2%)

Query  36   SGILLQCRLPGAQIGDLCRVERDAREPLL---AEIVGFDQHDALLSALGGLEGVRVGAAV  92
            +G +++  L +  IG+LC + R+ ++  +   A++VG++++ ++LS +G  +G+  +  +
Sbjct  17   TGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVL  76

Query  93   EPLGMPHRVCVGPQLLGQVLDGFGRPLVDGGAGAFAGAHVPNASQVIGEAPAPTARPRI-  151
             P G +    VG  +LG VLD  G+ +V+     F+    P + + + + ++P+  +R+ 
Sbjct  77   YPTGRALSAWVGYSVLGAVLDPTGK-IVE----RFTPEVAPISEERVIDVAPPSYASRVG  131

Query  152  -QRPLMTGVRAIDGPLTLGEGQRVGLFAGAGCGKTTLLAEIARNVDCDVIVFGLIGERGR  210
             + PL+TGVRAIDG LT G GQR+G+FA+AGCGKT L+  +  + + DV+V+GLIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  211  ELREFLDHELDDELRARAVLVCATSDRSSMEraraaftatalaEGFRARGLRVLLLIDSL  270
            E+ EF+D     + + + VLV ATSD +S++R  AA  AT++AE FR +G RV+L+IDS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  271  TRFARAQREIGLAAGEPLGRGGLPPSVYSLLPRLVERAGLTNEGAITAFYTVLIEQDSMN  330
            TR+ARA R+++LA+GE  +R G P+SV+  LPRL+ER+G T+EG+ITAFYTVL+E +   
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  331  DPVADEVRSLLDGHIVLSRKLAERGHYPAIDVLASLSRTLANVAEAEHLRAGINLRRLLS  390
            DP+ADE+RS+LDGH+ LSRKLA +GHYPAIDVL S+SR +++V+ + H   +  +R+L++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  391  AYEQIELMLRLGEYQAGADPLTDLAVESRGALDAFLRQDLREPEPFASTLAHLQQLTA  448
              E+++L + LGEY++G +   D A++ R++L A L Q + +  +F  TL+ ++ ++ 
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

382) fliI in NC_009706


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  251 bits (936),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 169/416 (41%), Positives = 275/416 (67%), Gaps = 20/416 (4%)

Query  26   KKVIGLTIEVEGIKAFVGEVCNV---YSEENGNIACEVVGFKEKDVILMPLGELIGISPG  82
            +K+ G  IE E     +GE+C++     + +     +VVG++    +L  +G+  G+S +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  83   CRVVPGRRPLSVKCSEELFGKVLDGLGN----------PLGEDEISSGVLYELDAEPPDP  132
              + P  R+LS   +  ++G VLD  G+          P++E+ +       +D  PP  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-------IDVAPPSY  126

Query  133  LKRKRIKQVISTGIRAIDGFLTCGEGQRIGIFAGSGVGKSTTLGMIARYAEADVNVIALI  192
              R  +++ + TG+RAIDG+LTCG GQR+GIFA++G GK+  + M+   +EADV VI+LI
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  193  GERGREVRDFIEKDLGEEGLKKSIIVCATSDKPALVRLKGAFTATAIAEYFRDKGKKVIL  252
            GERGREV +F++   + +   K ++V ATSD P++ R ++A  AT++AEYFRD+GK+V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  253  MMDSVTRFAMAQREIGLAVGEPPATKGYTPSVFAKLPRLMERSGMSDKGSITAFYTVLVD  312
             +DS+TR+A A R+++LA GE PA +GY +SVF +LPRL+ER+G +  GSITAFYTVL++
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  313  GDDLNEPIADAVRGILDGHIVLSRSLANKNHYPAIDVLSSISRLMSEITEKSHKKSASFA  372
            +++  +P+AD +R+ILDGH+ LSR LA + HYPAIDVL S+SR+ +++T  +H   AS  
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  373  RDMLSVYKNSEDLINIGAYIRGNNPNIDMAINYYDGIINYLKQNMDEYSSFDNSIN  428
            R +++   + + +I++G Y  G+N + D A++  D++   L Q + +YSSFD++++
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

383) CKR_1054 in NC_011837


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  251 bits (936),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 169/416 (41%), Positives = 275/416 (67%), Gaps = 20/416 (4%)

Query  26   KKVIGLTIEVEGIKAFVGEVCNV---YSEENGNIACEVVGFKEKDVILMPLGELIGISPG  82
            +K+ G  IE E     +GE+C++     + +     +VVG++    +L  +G+  G+S +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  83   CRVVPGRRPLSVKCSEELFGKVLDGLGN----------PLGEDEISSGVLYELDAEPPDP  132
              + P  R+LS   +  ++G VLD  G+          P++E+ +       +D  PP  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-------IDVAPPSY  126

Query  133  LKRKRIKQVISTGIRAIDGFLTCGEGQRIGIFAGSGVGKSTTLGMIARYAEADVNVIALI  192
              R  +++ + TG+RAIDG+LTCG GQR+GIFA++G GK+  + M+   +EADV VI+LI
Sbjct  127  ASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLI  186

Query  193  GERGREVRDFIEKDLGEEGLKKSIIVCATSDKPALVRLKGAFTATAIAEYFRDKGKKVIL  252
            GERGREV +F++   + +   K ++V ATSD P++ R ++A  AT++AEYFRD+GK+V+L
Sbjct  187  GERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVL  246

Query  253  MMDSVTRFAMAQREIGLAVGEPPATKGYTPSVFAKLPRLMERSGMSDKGSITAFYTVLVD  312
             +DS+TR+A A R+++LA GE PA +GY +SVF +LPRL+ER+G +  GSITAFYTVL++
Sbjct  247  FIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLE  306

Query  313  GDDLNEPIADAVRGILDGHIVLSRSLANKNHYPAIDVLSSISRLMSEITEKSHKKSASFA  372
            +++  +P+AD +R+ILDGH+ LSR LA + HYPAIDVL S+SR+ +++T  +H   AS  
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  373  RDMLSVYKNSEDLINIGAYIRGNNPNIDMAINYYDGIINYLKQNMDEYSSFDNSIN  428
            R +++   + + +I++G Y  G+N + D A++  D++   L Q + +YSSFD++++
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

384) BC1001_6046 in NC_015137


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  250 bits (935),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 180/405 (45%), Positives = 293/405 (73%), Gaps = 4/405 (0%)

Query  60   VIGTLVKVAGLDVTLGELCELRAA--NGKLLQHAEVIGFTRDVALLSPFSRLADISRSTR  117
            + G ++     DV++GELCE+R +  + +++ +A+V+G+ R+ ++LS ++   ++SR   
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  118  VVGLGRSLTVPVGDSLLGRVIDSLGEPIDGLGPLGA--TEQRPVFANPPSPMTRRMIDTP  175
            +   GR+L+  VG S+LG V+D+ G  ++ + P  A  +E+R +   PPS  +R  +  P
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  176  LATGVRVVDGMMTLAEGQRMGIFAPAGVGKSTLLGMFARGAQCDVTVIALIgergrevre  235
            L TGVR +DG++T + GQRMGIFA+AG GK+ L+ M+   ++ DV VI+LIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  236  fveLILGAEGMARSVVVCATSDRSSIERAKAAYVATAIAEHFRDRGQRVLLMMDSLTRFA  295
            FV+++ +++   + V+V ATSD +S++R +AA +AT++AE FRD+G+RV+L +DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  296  RAQREIGLAAGEPPARRGFPPSIFAELPRLLERAGMGEHGSITAMYTVLAEDESGNDPIA  355
            RA R+++LA+GE PARRG+P+S+F +LPRLLER+G   +GSITA YTVL E E   DP+A
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  356  EEVRGIVDGHMILSREIAAKNQYPAIDVLASLSRVMPQVMTPDYVraaarlrellaKHRE  415
            +E+R+I+DGH+ LSR +A++ +YPAIDVL S+SRV  QV TP     A+ +R L+++  E
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  416  VEMLLQIGEYQPGGNPLADEAIRKIDAIRAFFNQATHELAAPQDT  460
            +++++++GEY+PG N   D A++  D+++A + Q+  + ++ +DT
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

385) BUPH_00148 in NC_018672


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  250 bits (934),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 181/405 (45%), Positives = 293/405 (73%), Gaps = 4/405 (0%)

Query  43   VIGTLVKVAGLDVTLGELCELRAA--NGKLLQHAEVIGFTRDVALLSPFSRLADISRSTR  100
            + G ++     DV++GELCE+R +  + +++ +A+V+G+ R+ ++LS ++   ++SR   
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  101  VVGLGRSLTVPVGDSLLGRVIDSLGEPIDGLGPLGA--TEQRPVFANPPSPMSRRMIDTP  158
            +   GR+L+  VG S+LG V+D+ G  ++ + P  A  +E+R +   PPS  SR  +  P
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  159  LATGVRVVDGMMTLAEGQRMGIFAPAGVGKSTLLGMFARGAQCDVTVIALIgergrevre  218
            L TGVR +DG++T + GQRMGIFA+AG GK+ L+ M+   ++ DV VI+LIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  219  fveLILGAEGMARSVVVCATSDRSSIERAKAAYVATAIAEHFRDRGQRVLLMMDSLTRFA  278
            FV+++ +++   + V+V ATSD +S++R +AA +AT++AE FRD+G+RV+L +DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  279  RAQREIGLAAGEPPARRGFPPSIFAELPRLLERAGMGEHGSITAMYTVLAEDESGNDPIA  338
            RA R+++LA+GE PARRG+P+S+F +LPRLLER+G   +GSITA YTVL E E   DP+A
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  339  EEVRGIVDGHMILSREIAAKNQYPAIDVLASLSRVMPQVMTPDYVraaarlrellaKHRE  398
            +E+R+I+DGH+ LSR +A++ +YPAIDVL S+SRV  QV TP     A+ +R L+++  E
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  399  VEMLLQIGEYQPGGNPLADEAIRKIDAIRAFFNQATHELAAPQDT  443
            +++++++GEY+PG N   D A++  D+++A + Q+  + ++ +DT
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

386) PSPPH_2530 in NC_005773


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  250 bits (935),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 182/409 (45%), Positives = 294/409 (72%), Gaps = 2/409 (0%)

Query  29   RSIRGVLLRASVAGVGIGELCVLRDPGNGREL--SAEVIGFDEDDAILSPIGSMEGLSTR  86
            + I G ++ A + +V+IGELC +R   + +++   A+V+G++ + ++LS IG+ +GLS  
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  87   TQIIATGQALGVQVGDALLGRVISPMGEFLDGPAPTATLGMQHYPLHAEPPAPFSRQRIV  146
              + +TG+AL+  VG ++LG V+ P G +++  +P  +   ++  ++  PP+  SR  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  147  KPLSLGIRAIDSLLTLGQGQRMGIFGEPGVGKSSLLASIVRNSDADVIVIgligergrev  206
             PL  G+RAID+LLT G GQRMGIF+ +G GK+ L+  ++ +++ADV+VIGLIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  207  rellegqlDatarartvavvatSDRPAAERVRAAYVATTLAEYHRDQGRNVLLLMDSLTR  266
             E+++    +  + + V V ATSD P+ +R  AA +ATT+AEY RDQG+ V+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARAQREIGLAVGEPPPRRGYPPSFFSALPRLLERAGPGPQGSITALYTVLTEGDAAMDP  326
            +ARA R+++LA GE P+RRGYP+S F  LPRLLER+G+ ++GSITA+YTVL E++   DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VAEETRSILDGHIVLSAELAQRDHFPAIDVLRSRSRLMDHIATAEHRHLASRLRELIARR  386
            +A+E RSILDGH+ LS  LA ++H+PAIDVL+S SR+ ++++T+ H + AS +R L++R 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  QEIELLIQVGEYAAGSDPIADEAIARHSPIEAFLRQPPSEHDSLAQTLA  435
            +E++L+I++GEY +G +   D A+  + ++ A L QP ++  S+ +TL+
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

387) SG1301 in NC_007712


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  250 bits (934),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 169/384 (45%), Positives = 262/384 (69%), Gaps = 9/384 (2%)

Query  34   HIGATLLRARLPGAMMGEVC---RLLPEGGL---AEVVRIEGDDVLLSPYGPTEGLTYGQ  87
             I + ++ A L +  +GE+C   R   +  +   A+VV ++ +  +LS  G ++GL+ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   RVQPLRHRQRAPVGSALLGRVIDGLGRALDDMPDPQGPW---RELDAPPPPPLTRQRIAR  144
             + P  +   A VG ++LG V+D  G+ ++      +P    R +D +PP+  +R  +  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  145  PLLTGIRAIDALLTCGEGQRIGIFAAAGGGKSTLLSMLSACPDCDVTVLALIGERGREVR  204
            PL+TG+RAID+LLTCG GQR+GIFA+AG GK+ L+ ML    + DV V++LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  205  EFLEQTLDDEARQRCVTIVATSDRPALERVCALSLATTVAEAFRDQGLRVLLLADSLTRY  264
            EF++     + +++CV + ATSD P+++R  A  LATTVAE FRDQG RV+L+ DS+TRY
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  265  ARAGREIALAAGETCVGSSYPPAVFAALPRLLERAGMGTVGSITAFYTVLVEGDDINEPL  324
            ARA R++ALA+GE     +YP++VF  LPRLLER+G  + GSITAFYTVL+E+++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  325  ADEVRSLLDGHIILSRRLAESGHFPAIDVLASLSRIMPSIVGERHIVLVATLRQLLSVYR  384
            ADE+RS+LDGH+ LSR+LA  GH+PAIDVL S+SR+   +    H    +++R+L++   
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  385  DVELLVRVGEYQRGDDPLADRAVD  408
            +++L++ +GEY+ G++   DRA++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQ  398

388) Ferpe_0492 in NC_017095


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  250 bits (934),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 175/414 (43%), Positives = 278/414 (68%), Gaps = 7/414 (1%)

Query  31   EYIGEVQKVIGLTIESKGPDAAYGELCKIIVG-NKKAL---AEVVGFKEDMTVLMPLEDI  86
            +Y++  QK+ G  IE+   D A GELC I  G ++K +   A+VVG++ + TVL  + + 
Sbjct  8    QYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNA  67

Query  87   TGLKKGCEVIKTNKTVSIPVGEELRGRVVDALGRPID---GKRLVLREYRPIINEAPNPL  143
             GL ++  +  T +++S  VG  + G V+D+ G+ ++        + E R I   +P+  
Sbjct  68   QGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA  127

Query  144  IRKRILEPLPVGVRAIDGFITLGKGQRIGIFAGSGVGKSTLLGMIARNTMADINVIALIG  203
             R  + EPL  GVRAIDG++T G GQR+GIFA++G GK+ L+ M+  +T AD+ VI+LIG
Sbjct  128  SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIG  187

Query  204  ERGREVREFIEKDLGEEGLKRSVVVVSTSDQPALLRIKALLTATTIAEYFRDKGYAVMLM  263
            ERGREV EF++   + +   + V+V +TSD P++ R +A   ATT+AEYFRD+G  V+L 
Sbjct  188  ERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLF  247

Query  264  VDSLTRWAMAQREVGLAIGEPPTTRGYPPSVFAQLPKILERAGNSDKGSITGIYTVLVEA  323
            +DS+TR A A R+V+LA GE P+ RGYP+SVF +LP++LER+G +  GSIT++YTVL+E+
Sbjct  248  IDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLES  307

Query  324  DDFNEPISDTVRGIVDGHIILSRRLAESNHYPAIDVLMSVSRLMTDIVKPEHLHAARLLR  383
            ++  +P++D +R+I+DGH+ LSR+LA   HYPAIDVL SVSR+  ++  P H + A  +R
Sbjct  308  EEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVR  367

Query  384  DIMATYNDAKDLIDVGAYKKGTNPKIDKAIELIDEINKFLRQGIHEKMTFEDTV  437
             +M+  ++ + +ID+G Y+ G N   D+A+++ D ++  L Q + +  +F+DT+
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

389) H04402_02754 in NC_017299


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  250 bits (935),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 165/407 (41%), Positives = 275/407 (68%), Gaps = 6/407 (1%)

Query  28   RKVIGLTVEVEGIKAFVGEVCII---YNEKNQTIPCEVVGFKEENVILMPLGELIGIAPG  84
            +K+ G  +E E     +GE+C I    ++K+     +VVG++ E  +L  +G+  G++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   CKVIPQGKPLSVICSENILGKVLDGLGNPLE---GEELMEGSPYALDSDPPDPMKRRRIK  141
              + P G++LS   + ++LG VLD  G+ +E    E    +    +D  PP    R  ++
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  142  DVIPTGIKAIDGFITVGEGQRIGIFAGSGVGKSTTLGMIAKYAEADINVIALIGERGREV  201
            + + TG++AIDG++T G GQR+GIFA++G GK+  + M+   +EAD+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  202  RDFIEKDLGEEGLKKSVIVCATSDKPALVRLKGAFTATAIAEYFRDQGKKVILMMDSVTR  261
             +F++   + +   K V+V ATSD P++ R ++A  AT++AEYFRDQGK+V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  262  FAMAQREIGLAIGEPPATKGYTPSVFAKLPRLMERSGMSNKGSITAFYTVLVDGDDFNEP  321
            +A A R+++LA GE PA +GY +SVF +LPRL+ER+G ++ GSITAFYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  322  IADAVRGILDGHIVLSRSLAAKNHYPAIDVLSSVSRLMSEIASKEHKDAAGMARDLLATY  381
            +AD +R+ILDGH+ LSR LA++ HYPAIDVL SVSR+ +++++  H + A+  R L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  382  KNSEDLINIGAYVKRSNPKVDMAIHYHESILSFLKQGIGEQHSFEES  428
             + + +I++G Y    N   D A++ ++S+ + L Q +++  SF+++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

390) Desmer_3913 in NC_018515


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  250 bits (935),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 169/415 (41%), Positives = 279/415 (68%), Gaps = 10/415 (2%)

Query  25   KIVGLMVESAGPRASVGEYCHIITRG----GLELPAEVVGFRDSTTLLMPLGELEGIAPG  80
            KI G ++E+     ++GE C+I  RG     +   A+VVG++   T+L  +G+ +G++ +
Sbjct  15   KITGPIIEAELRDVAIGELCEI-RRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  81   DRVLSQRQKLTVSVGPGLLGRIFDGLGHPLDGRPLQTITAYP----LQNKPPSAILRPRI  136
              + +  + L+  VG ++LG ++D  G  ++ R    +++ +    ++  PPS   R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  137  QDPLSVGVRTIDGILTIGRGQRMGIFAGSGVGKSTLLGMMARNTVADINVIALIGERGRE  196
            ++PL  GVR+IDG+LT G GQRMGIFA++G GK+ L+ M+  +T AD+ VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  197  LRDFIEKDLGPEGLARSVIIVATSDQPALVRLKAALTATAVAEYFRDQGKNVLLMMDSVT  256
            + +F++   +++   + V++ ATSD P++ R +AA  AT+VAEYFRDQGK V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  257  RFAMAQREVGLTVGEPPATRGYPPSVFALLPKLLERAGMAEVGSITGIYTVLVDGDDHNE  316
            R+A A R+V+L+ GE PA RGYP+SVF  LP+LLER+G +  GSIT++YTVL++++++ +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  317  PIADSVRGILDGHIVLTRELAMQNMFPAIDILQSVSRVMNDVVSPDQKTLAGQVREYIAI  376
            P+AD +R+ILDGH+ L+R LA Q  +PAID+L+SVSRV  +V +P +   A+ VR  ++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  377  YRDAKDLIDIGAYTPGSNPKIDAAIAHMDRIQGFSRQMVDEYVTYPEMLKQLQGI  431
              + + +ID+G Y PG N   D A+   D +++   Q V +Y ++ + L  ++++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

391) NAL212_0483 in NC_015222


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  250 bits (934),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 176/436 (41%), Positives = 276/436 (64%), Gaps = 33/436 (7%)

Query  32   KVTGLVMEAVGLR-LAVGSSCTV---FLANGQNVSAEVVGFSGERLFLMPSSDVYGLSPG  87
            K+TG ++EA  LR +A+G  C +      +     A+VVG+  ER  L   ++  GLS +
Sbjct  15   KITGPIIEA-ELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  88   ARVFPSEVLNEPPRIGNFQHPRRRAADRAKHVIVGPELLGRVLNGVGEPLDR----LGPT  143
              ++P+                    +RA    VG  +LG VL+  G  ++R    ++P 
Sbjct  74   VVLYPT--------------------GRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPI  113

Query  144  HAEHSVPLYSRPFNPLERTPVSEPLDVGVRAINTLLTVGRGQRMGLFAGSGVGKSVLLGM  203
              E+ + + + ++ +  R  V EPL  GVRAI+ LLT G GQRMG+FA++G GK++L+ M
Sbjct  114  SEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHM  171

Query  204  MARYTTADVIVVGLIGERGREVKEFIENILGKEGLARSVVVAAPADTSPLLRLQGAAYAT  263
            +   T ADV+V+GLIGERGREV EF++ + + +   + V+V A +D +++ R ++A  AT
Sbjct  172  LIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLAT  231

Query  264  AIAEYFRDSGKHVLLIMDSLTRYAMAQREISLAIGEPPATKGYPPSVFAKLPQLVERAGN  323
            ++AEYFRD GK+V+L++DS+TRYA A R+++LA GE PA +GYP+SVF +LP+L+ER+G 
Sbjct  232  TVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA  291

Query  324  GNQAGGSITAFYTVLAEGDDQNDPIVDSARAILDGHIVLSRRLAEAGHYPAIDIEASISR  383
             ++  GSITAFYTVL E++++ DP+ D  R+ILDGH+ LSR+LA  GHYPAID+  S+SR
Sbjct  292  TSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSR  349

Query  384  VMTSVVPPKQIDMARQFKSLYARYQRSHDLISVGAYVAGTDPELDRAIRLYPSFEKFLHQ  443
            V   V  P + + A   + L +R +  + +I +G Y +G + + DRA+++  S+   L Q
Sbjct  350  VFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQ  409

Query  444  TMSQYENFADSLVKLT  459
             ++QY +F D+L  + 
Sbjct  410  PVAQYSSFDDTLSGMN  425

392) sctN in NC_002620


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  250 bits (932),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 274/409 (67%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELSGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIATGLPLHIRAGAGLLGRVLNGLGEPID--IETKGPLENVDSIYPIFKAPPDPLHREKL  144
            + +TG +L  + G ++LG VL+  G  ++      +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASEKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

393) Tmari_0216 in NC_021214


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  250 bits (932),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 168/414 (41%), Positives = 273/414 (66%), Gaps = 14/414 (3%)

Query  26   RVVGLTVESKGPDAFLGEMCKI---SLQNGKNALAEVVGFREESVILMPYEDVSGLKMGC  82
            ++ G  +E+   D  +GE+C I     Q+   A A+VVG++ E  +L    +  GL  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  83   EVIRTNKVLEVGVSRKMIGRVFDGLGRPIDGKPFVPE------DRYPLINNPPNPLKRR-  135
             +  T + L   V+  ++G V+D  G+ ++   F PE      +R  +I+ +P +   R 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEER--VIDVAPPSYASRV  130

Query  136  RIKDPLPVGIRSIDGFITIGKGQRIGIFAGSGVGKSTLLGMIARNTTADINVLALIGERG  195
             +++PL  G+R+IDG++T G GQR+GIFA++G GK+ L+ M+  +T AD+ V++LIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  196  REVREFIERDLGEEGLKRSILVVSTSDQPALARVKSLLTATSIAEFFRDLGYDVLLMVDS  255
            REV EF++   + +   + +LV +TSD P++ R ++   AT++AE+FRD G  V+L +DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  256  LTRWAMAQREVGLAVGEPPTTRGYPPSVFAGLPKILERAGNSDKGSITAIYTVLVEADDF  315
            +TR A A R+V+LA GE P+ RGYP+SVF  LP++LER+G +  GSITA+YTVL+E+++ 
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  316  NEPISDTVRSIVDGHIILSRRLAESNHYPAVDVLASVSRLMNDIVTEEHREAANRLRSLM  375
             +P++D +RSI+DGH+ LSR+LA   HYPA+DVL SVSR+  ++ T  H E A+ +R LM
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  376  SAYESAKDLIEIGAYKSGTNPLVDKAVEMKDEIDSFLKQGVFEKASFEETLQKL  429
            +  E  + +I++G Y++G N   D+A++M+D + + L Q V + +SF++TL  +
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

394) TM0218 in NC_000853


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  250 bits (932),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 168/414 (41%), Positives = 273/414 (66%), Gaps = 14/414 (3%)

Query  26   RVVGLTVESKGPDAFLGEMCKI---SLQNGKNALAEVVGFREESVILMPYEDVSGLKMGC  82
            ++ G  +E+   D  +GE+C I     Q+   A A+VVG++ E  +L    +  GL  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  83   EVIRTNKVLEVGVSRKMIGRVFDGLGRPIDGKPFVPE------DRYPLINNPPNPLKRR-  135
             +  T + L   V+  ++G V+D  G+ ++   F PE      +R  +I+ +P +   R 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVAPISEER--VIDVAPPSYASRV  130

Query  136  RIKDPLPVGIRSIDGFITIGKGQRIGIFAGSGVGKSTLLGMIARNTTADINVLALIGERG  195
             +++PL  G+R+IDG++T G GQR+GIFA++G GK+ L+ M+  +T AD+ V++LIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  196  REVREFIERDLGEEGLKRSILVVSTSDQPALARVKSLLTATSIAEFFRDLGYDVLLMVDS  255
            REV EF++   + +   + +LV +TSD P++ R ++   AT++AE+FRD G  V+L +DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  256  LTRWAMAQREVGLAVGEPPTTRGYPPSVFAGLPKILERAGNSDKGSITAIYTVLVEADDF  315
            +TR A A R+V+LA GE P+ RGYP+SVF  LP++LER+G +  GSITA+YTVL+E+++ 
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  316  NEPISDTVRSIVDGHIILSRRLAESNHYPAVDVLASVSRLMNDIVTEEHREAANRLRSLM  375
             +P++D +RSI+DGH+ LSR+LA   HYPA+DVL SVSR+  ++ T  H E A+ +R LM
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  376  SAYESAKDLIEIGAYKSGTNPLVDKAVEMKDEIDSFLKQGVFEKASFEETLQKL  429
            +  E  + +I++G Y++G N   D+A++M+D + + L Q V + +SF++TL  +
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

395) COPRO5265_0319 in NC_011295


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  249 bits (931),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 169/400 (43%), Positives = 274/400 (69%), Gaps = 12/400 (3%)

Query  42   VGELCSVNR-FDGKPMFA--EVVGFKEGKTLLMPIGDVQGIGPNSLIRAMGRPL--WIKV  96
            +GELC + R  + K + A  +VVG++  +T+L  IG+ QG++ + ++ + GR+L  W  V
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW--V  87

Query  97   SDGLVGRVVNAIGEPLD----DKGPVYGEKRSVYQDPPHPLKRKIITEPLQTSIKAIDGL  152
            + +++G V+++ G  ++    + +P+ +E R +   PP    R  + EPL T+++AIDGL
Sbjct  88   GYSVLGAVLDPTGKIVERFTPEVAPI-SEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  153  LTVGKGQRVGIFAGSGVGKSTLLGMIARNSSADVNVIILVGERGREVRKFIEEDLTEEGA  212
            LT G GQR+GIFA++G GK+ L+ M+  ++ ADV VI L+GERGREV  F++   + +  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  213  KRSVVVVATSDQPALLRVKAVLTGMTIAEYFRDQGKDVLVMMDSVTRLAMAQREVGLSIG  272
             + V+V ATSD P++ R +A   + T+AEYFRDQGK V++ +DS+TR A A R+V+L+ G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  273  EPPTTRGYTPSVFALLPKILERAGNSDKGSITAFITVLVEGDDMNEPVADAVRSILDGHI  332
            E P+ RGY +SVF  LP++LER+G +  GSITAF TVL+E+++  +P+AD +RSILDGH+
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  333  VLSRALAHRAHYPAIDVLQSISRVMNDVVSAKHLKLANRMRELLAVYTEAEDLINIGAYQ  392
             LSR LA ++HYPAIDVL+S+SRV  +V ++ H   A+ +R L++   E + +I++G Y+
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  393  RGNNPKIDEALDYIDAINHFLLQQVKESYTLEQTVSLMEE  432
             G+N   D A++  D+++  L Q V +  ++++T+S M+ 
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

396) fliI in NC_016112


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  249 bits (931),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 166/389 (43%), Positives = 262/389 (68%), Gaps = 11/389 (2%)

Query  50   PIGSRCQVQ---TKAGRVIEAEVVGFSGDRLFLMPTGDPYGLEPDCRVIPMSKEYLARVG  106
            +IG  C+++    +   V  A+VVG+  +R  L   G++ GL  D  + P ++   A+VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  107  FSLLGRVLDGAGNALD----GKGPLKTDAQVSLTGVPVNPLSRKPIREVLDVGVRAINAL  162
            +S+LG VLD +G+ ++      +P+  +  + ++  P +  SR  +RE L  GVRAI++L
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVA--PPSYASRVGVREPLITGVRAIDGL  146

Query  163  LCVGRGQRMGLFAGTGVGKSVLLGMMTKFTNADVVVVGLIGERGREVNEFVQKILGTEGL  222
            L  G GQRMG+FA++G GK++L+ M+   T+ADV V+GLIGERGREV EFV+ + +++  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  223  SRSVVVATPADYPPLMRANGALLATSIAEYFRDQGLDVLLLMDSLTRYAQAHREIALAID  282
             + V+V + +D+P++ R N+A LAT++AEYFRDQG  V+L++DS+TRYA+A R++ALA +
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  283  EPPATKGYPPSVFAKLPRLVERAGNGDEGGGSITAFYTVLTEGDDPNDPVADSARGVLDG  342
            E PA +GYP+SVF +LPRL+ER+G   E  GSITAFYTVL E+++  DP+AD  R++LDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  343  HIVLTRELAESGHFPAIDIEASVSRVLPDIVDDDHLRMVRKLRGLYSLYQQNRDLISVGA  402
            H+ L+R LA  GH+PAID+  SVSRV+ ++    H      +R L +  ++ + +I +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  403  YKPGSNPNIDLAIEKIAAIRNFLQQDMNE  431
            Y+PG N + D A++   +++  L Q + +
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

397) Glov_3301 in NC_010814


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  249 bits (930),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 171/411 (42%), Positives = 281/411 (69%), Gaps = 5/411 (1%)

Query  22   QVVGLVIEGYCPDTSVGAICEIR---PKDGVPIPAEVVGFRDNKTLLMPLGDLRGVGLDS  78
            ++ G +IE+   D ++G +CEIR    +  V   A+VVG++ ++T+L  +G+ +G++ D 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  79   LIAVRRDKATLRVGPGLLGRVIDGLGNPIDDKGP--LHLDEEYPIYAAPVNPMKRPPIRR  136
            ++       + +VG ++LG V+D  G+ ++   P    + EE  I  AP +   R  +R 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  137  PLDLGIRSINGLLTCGQGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGRELR  196
            PL  G+R+I+GLLTCG GQR+GI A++G GK+ L+ M+   TEADV VI+LIGERGRE+ 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  197  EFVEKDLQEQGLHKSVVVVATSDQPPLVRMRGAYLATTIAEYFKDQGKKVLMMMDSATRF  256
            EFV+     +  +K V+V ATSD P++ R  +A LATT+AEYF+DQGK+V++ +DS TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  257  AMAMREVGLAIGEPPTTKGYTPSVFAALPKLLERTGNFPEGSITGLYTVLVEGDDFNEPI  316
            A A+R+V+LA GE P+ +GY +SVF  LP+LLER G  +EGSIT++YTVL+E+++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  317  SDAMRSILDGHIVLSRDLAARNIYPPIDIMASASRVMADVADERHRKLAGQFKETLATYR  376
            +D +RSILDGH+ LSR LA++  YP+ID++ S SRV ++V+   H   A+  +  ++   
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  377  QSEDLINIGAYKAGSNPGIDQAIRKIDAMTAYQKQAVADPATLADSVDGLQ  427
            + + +I++G Y++G N + D+A++  D++ A   Q+VA+ +++ D++ G++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

398) rscN in NC_017911


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  249 bits (930),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 173/422 (41%), Positives = 292/422 (70%), Gaps = 10/422 (2%)

Query  33   QRVNGMLLQCRLPQARIGDLCQVEKGPGDFML---AEIIGFDQQDAVLSALGNLEGVRVG  89
            Q++ G +++  L +  IG+LC++ +G  +  +   A+++G++++ +VLS +GN +G+  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  90   AGVERLGVSHRVQVSEALLGQVLDGFGRPITGQGASAFVEAELPDTSAVLCEAPLPTERP  149
              +   G +    V+ ++LG VLD      TG+    F     P +   + + + P+  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDP-----TGKIVERFTPEVAPISEERVIDVAPPSYAS  128

Query  150  RIN--RALATGVRSIDGLMTLGEGQRVGLFAGAGCGKTTLLAEIARNVECDVIVFGLIGE  207
            R+    +L TGVR+IDGL+T G GQR+G+FA+AGCGKT L+  +  + E DV+V+GLIGE
Sbjct  129  RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGE  188

Query  208  RGRELREFLDHELDEQLRSKAVLVCATSDRSSMEraraaftatalaEGFRRKGQRVLLLI  267
            RGRE+ EF+D     + + K VLV ATSD +S++R  AA  AT++AE FR +G+RV+L+I
Sbjct  189  RGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFI  248

Query  268  DSLTRFARAQREIGLAAGEPLGRGGLPPSVYSLLPRLVERAGLTRDGVITAIYTVLIEQD  327
            DS+TR+ARA R+++LA+GE  +R G P+SV+  LPRL+ER+G T +G ITA+YTVL+E +
Sbjct  249  DSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESE  308

Query  328  SMNDPVADEVRSLLDGHIVLSRKLAERGHYPAVDVLASLSRILSNVAEPADIQAGTALRR  387
               DP+ADE+RS+LDGH+ LSRKLA +GHYPA+DVL S+SR++++V+ P++ + ++A+R+
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  388  LLSAYQQIELMLKLGEYQPGSDALTDLAVNSRQAVDGFLRQDLREPTPMAVTLEQLKELT  447
            L++  ++++L + LGEY+PG +   D A++ R+++ + L Q + + ++   TL  ++ ++
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFA  428

Query  448  AH  449
             +
Sbjct  429  DQ  430

399) REMIM1_PE00269 in NC_021909


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  249 bits (930),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 172/408 (43%), Positives = 280/408 (69%), Gaps = 4/408 (0%)

Query  42   RAVGTLVHAVLSDARIGELCVLQDPSTGRSL--EAEVVGFLPDGVLLTPIGDMVGLSRRA  99
            +  G +++A L D  IGELC ++     + +   A+VVG+  +  +L+ IG+  GLSR  
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  100  EVVASGRMHEVPVGPDLLGRVIDSFGRPLD--GKSAIKTYETRPLRGRAPNPMTRRIIER  157
             + ++GR     VG  +LG V+D+ G+ ++          E R +   +P+  +R  +  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  158  PFPLGVRALDGLLTCGEGQRIGIYGEPGCGKSTLLSQIVNGASADVSIIALIgergrevr  217
            P+  GVRA+DGLLTCG GQR+GI++ +GCGK+ L+  +++ + ADV +I+LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  218  efverHLGEAALRRTIVVVETSDRSAMERAQCAHMATALAEYFREQGLRVVLMMDSLTRF  277
            EFV+   +     + ++V  TSD ++++R + A++AT++AEYFR+QG RVVL +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  278  CRAMREIGLAAGEPPTRRGFPPSVFAMLPGLLERAGMDERGSITAFYTVLVEGDGLGDPI  337
             RA+R+++LA+GE P+RRG+P+SVF  LP LLER+G    GSITAFYTVL+E++  +DP+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  338  AEESRGILDGHVVLSRTIAARSQFPAIDVLQSRSRVMDAVVSVAHRKAASMFRDLLARYA  397
            A+E R+ILDGH+ LSR +A+++++PAIDVL+S SRV + V + +H   AS  R L++R  
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  398  ESEFLLKVGEYKKGNDLLTDRAIASIGDLQGFLRQGEDEASGFEETVA  445
            E ++++ +GEY+ G+++  DRA+   + L++ L Q   + S+F++T++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

400) BTI_1915 in NC_021173


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  248 bits (925),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 178/411 (44%), Positives = 291/411 (71%), Gaps = 9/411 (2%)

Query  35   EVGPTLVRATLPHVGLAELCRL------EPAGIDAEVVSIEGDTALLSPFAEPRGIAAGC  88
             +   ++ A L +V+++ELC +            A+VV+++ + ++LS +++++G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  89   AVRPLGRAHRIPVGTFllgrvvdglgrlFDH-GPDV-PDSATWVDLARSAPDPLRRAIID  146
             + P GRA    VG  +LG V+D  G++ ++  P+V P S  +V +  ++P    R  + 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVR  133

Query  147  TPLPLGVRAIDGLLTCGRGQRVGIFAAAGGGKSTLLGMICDGSLADVTVLALIGERGREV  206
             PL  GVRAIDGLLTCG GQR+GIFA+AG GK+ L+ M+ + + ADV V++LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  207  REFLEHTLTPEARARAIVVVATSDRPALERLKAAYTATAIAEHFRDQGRDVLLMMDSLTR  266
             EF++   +++ + + ++V ATSD P+++R +AA  AT++AE FRDQG+ V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARAAREIGLAAGEKPAAGSYPPSFFARLPGLLERAGPAATGSITGLYTVLVEGDNLNEP  326
            +ARA R+++LA+GE+PA  +YP+S F  LP LLER+G+++ GSIT++YTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VADEVRSILDGHIVLSRKLAEANHYPAIDVGASVSRVMSQIVATrhrdgaarlrrldaVY  386
            +ADE+RSILDGH+ LSRKLA   HYPAIDV  SVSRV +Q+ +  H + A+ +R+L +  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  RDIELLVRVGEYRHGADPEADDALARREAIRQFLCQSVTDKTSFDQTLEQL  437
             +++L++ +GEYR G + + D A+  R++++  LCQ+V++ +SFD+TL  +
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

401) Ser39006_2915 in NC_022268


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  248 bits (926),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 179/422 (43%), Positives = 293/422 (70%), Gaps = 10/422 (2%)

Query  41   ISGILLESSLPRARIGDLCLVKRN-DATQILA--EIVGFSAENTFLSALGALDGIAQGAV  97
            I+G ++E+ L    IG+LC ++R  +  Q++A  ++VG+  E T LS +G  +G++++ V
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  98   VTPLYQPHCVHISDALFGSVLDGFGRPLEEGGASAFVEPGDISVHPTPVLGDAPPP-TER  156
            + P  ++    ++ +++G+VLD  G+ +E      F  P   ++    V++ APP+ + R
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-----FT-PEVAPISEERVIDVAPPSYASR  129

Query  157  PRISQPLPTGIRAIDGLLTIGRGQRVGIFAGAGCGKTTLLAELARNTPCDAIVFGLIGER  216
              + +PL TG+RAIDGLLT G GQR+GIFA+AGCGKT L+  L  +T  D +V+GLIGER
Sbjct  130  VGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGER  189

Query  217  GRELREFLDHELDEELRRRTVLICATSDRSSMeraraaftataiaeafRSEGKQVLLILD  276
            GRE+ EF+D     + + + VL+ ATSD +S++R  AA  AT++AE FR +GK+V+L++D
Sbjct  190  GREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFID  249

Query  277  SLTRFARAQREIGLALGEPQGRGGLPPSVYTLLPRLVERAGQTRQGAITALYSVLIEQDS  336
            S+TR+ARA R+++LA GE  +R G P+SV+  LPRL+ER+G T +G+ITA+Y+VL+E + 
Sbjct  250  SMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEE  309

Query  337  MNDPVADEVRSLIDGHIVLSRHLAERNHYPAIDVLMSLSRIMSNIVEKTHTRDASTVRRL  396
              DP+ADE+RS++DGH+ LSR LA + HYPAIDVL S+SR+ +++   TH+ +AS+VR+L
Sbjct  310  EADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKL  369

Query  397  MAAYKQVEMLIRLGEYQPGHDTFTDAAVNANDEINHFLQQSMREPLSFEDIQARLAELST  456
            M+   +++++I LGEY+PG++   D A++  D ++  L Q++ +  SF+D  + +  ++ 
Sbjct  370  MTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

Query  457  HA  458
            + 
Sbjct  430  QN  431

402) A11Q_2143 in NC_020813


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  248 bits (926),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 276/407 (68%), Gaps = 9/407 (2%)

Query  27   VTGLIIKGYIPGVSVGSICEIQTAASDKPVLA--EVVGF-RDRHVLMMSLGSQQGISMGS  83
            +TG II + + +V++G +CEI+ +  +K V+A  +VVG+ R+R VL + +G+ QG+S + 
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSL-IGNAQGLSRDV  74

Query  84   KITLSKSIATVKVSEELLGRVVDGMGKALDN-GPEIEITNEVSLYGEVVNP--LMRAPIR  140
             +  +    +  V+  +LG V+D  GK ++   PE+   +E  +  +V  P    R  +R
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVR  133

Query  141  ESLDVGVRAINAAITAGRGQRVAIMAGSGVGKSVLMGMMAKQTEADVNVIALIGERGREV  200
            E+L  GVRAI++ +T G GQR++I A++G GK++LM M+  QTEADV VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  201  REFIENELGEEGMRKTVVVCVTSDQSPLLRMRGAFVATAIAEYFAHTGKSVLLVMDSVTR  260
             EF++   + +   K V+V  TSD +++ R  +A +AT++AEYF + GK V+L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  261  FAMAMREIGLSIGEPPSTKGYTPSVFSTLPKLLERAGNFEGSGSITGFYTTLVEGDDMND  320
            +A A+R+++L+ GE P+ +GY +SVF  LP+LLER+G   + GSIT+FYT L+E+++  D
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-TSEGSITAFYTVLLESEEEAD  312

Query  321  PIGDAVRSIVDGHIVLSRAIAHKGHFPAIDVLQSASRVMKAVTDPDHVRMAQKLREILAT  380
            P++D +RSI+DGH+ LSR +A +GH+PAIDVL+S SRV   VT P H   A  +R +++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  381  YRDAEDLINVGAYKAGANPKIDKAIKLIDPINEFLRQRTEDHSNMEQ  427
              + + +I++G Y++G N   D+A+++ D+++  L Q   + S+ ++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

403) fliI in NC_018268


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  248 bits (926),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 162/399 (41%), Positives = 268/399 (68%), Gaps = 11/399 (2%)

Query  61   VGDRCVIQ---SQGRGVVEAEVVGFEDEKVYLMPLTAIEGLRPGALVVPLSSTSRVPVGN  117
            +G+ C I+    Q + V  A+VVG++ E+  L  +   +GL  + ++ P + +    VG 
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY  89

Query  118  QLLGRVVDGSGEPLD----GKGPLHAEARVSLSGDIINPLNRAPVRQPMDVGIRAINALL  173
             +LG V+D +G  ++      +P+  E  + ++       +R  VR+P+  G+RAI++LL
Sbjct  90   SVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA--SRVGVREPLITGVRAIDGLL  147

Query  174  TVGQGQRLGLFAGSGVGKSVLLGMMTRFTNADVTVVGLIGERGREVKEFIEDILGEEGLA  233
            T G GQR+G+FA++G GK++L+ M+   T+ADV V+GLIGERGREV EF++ + + +   
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  234  RSVVVASPADDSPLMRLRAAMLTTRIAEFYRDQGKRVLLLMDSLTRYAQAQREIALAVGE  293
            + V+V + +D +++ R  AA L+T +AE++RDQGKRV+L++DS+TRYA+A R++ALA GE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  294  PPATKGYPPSVFAKLPQLVERTGNGRPGGGSITAFYTVLTEGDDQQDPIADAARAILDGH  353
             PA +GYP+SVF +LP+L+ER G    + GSITAFYTVL E++++ DP+AD  R+ILDGH
Sbjct  268  RPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  354  IVLSRRLAEEGHYPAIDVEASISRVMPQVTDPEHFARAQRFKQVYSRYQQARDLISVGAY  413
            + LSR+LA +GHYPAIDV  S+SRV  QVT P H  +A   +++ +R ++ + +I +G Y
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  414  VKGSDPETDFAVAHIANMRQFLKQGLSEKTSLNESVEQL  452
              G + + D A+    +++  L Q +++ +S+++++  +
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

404) CTN_0467 in NC_011978


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  247 bits (922),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 171/410 (42%), Positives = 271/410 (67%), Gaps = 12/410 (2%)

Query  19   RVVGLTVESHGPDAFLGEMCKI---SLQNGKNALAEVVGFKEGNVVLMPYEDVSGLKMGC  75
            ++ G  +E++  D  +GE+C I     Q+   A A+VVG++    VL    +  GL  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  76   EVIRTNRVLEIGVGRNMIGRIFDGLGRPLDGRSFVPEARYPLTN------SPPHPLKRKR  129
             +  T R L   VG +++G ++D  G+ ++   F PE   P+++      +PP    R  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE--RFTPEVA-PISEERVIDVAPPSYASRVG  131

Query  130  IKDPLSVGVRAIDGFITIGKGQRIGIFAGSGVGKSTLLGMIARNTTADVCVLALIGERGR  189
            +++PL  GVRAIDG++T G GQR+GIFA++G GK+ L+ M+  +T ADV V++LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  190  EVREFIERDLGEEGLKRSILVVSTSDQPALARVKSLLTATSIAEYYRDLGYDVLLMVDSL  249
            EV EF++   + +   + +LV +TSD P++ R ++   AT++AEY+RD G  V+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  250  TRWAMAQREVGLAIGEPPTTRGYPPSVFAGLPKILERAGNSDRGSITAVYTVLVEADDFN  309
            TR A A R+V+LA GE P+ RGYP+SVF  LP++LER+G +  GSITA YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  310  EPISDTVRSIVDGHIVLSRRLAESNHYPAIDVLASVSRLMNDVVSEEHKEAANRLRSLLA  369
            +P++D +RSI+DGH+ LSR+LA   HYPAIDVL SVSR+  +V +  H E A+ +R L++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  370  SYESAKDLIEIGAYKKGTNPLVDKAIEMQEDINAFLRQGIFEKSSFEETV  419
              E  + +I++G Y+ G N   D+A++M++ ++A L Q + + SSF++T+
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

405) RHOM_06955 in NC_015977


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  247 bits (924),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 171/408 (42%), Positives = 283/408 (70%), Gaps = 4/408 (0%)

Query  25   KIVGLTIESVGPDAKLNDLCRIVIDREKDHAV-MAEVVGFRDKRLLLMPFENVEGIGVGC  83
            KI G  IE+   D  + +LC I  ++++ + V  A+VVG++  R +L  + N +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  84   IVENTghplgvlvgdgvlghtldgIGRPTD---GGVIEGGCEYPVEADPPDPMSRKIISE  140
            ++  TG++L+  VG +VLG  LD  G+  +     V   + E  ++  PP   SR  + E
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  141  VLPLGVKAVDGLITVGKGQRIGIFAGSGVGKSTLLGMFARNTKADINVIALIGERGREVR  200
             L  GV+A+DGL+T G GQR+GIFA++G GK+ L+ M+  +T AD+ VI+LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  201  EFIERDLGEEGMKRSVVVVATSDKPALIRNKAAKTATAIAEYFRDQGKDVLLMMDSLTRF  260
            EF++   + +   + V+V ATSD P++ R +AA+ AT++AEYFRDQGK V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  261  SMAQREIGLASGEPPVTRGYPPSVYSEMPKLLERAGTSDKGSITGLYTVLVDGDDFNEPI  320
            + A R+++LASGE P  RGYP+SV+ ++P+LLER+G++  GSIT++YTVL+++++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  321  TDTARSILDGHIVLSRKLGHKNHYPAIDILQSISRVMSAIATSEHKELAGRLKNVLATYN  380
            +D  RSILDGH+ LSRKL+ + HYPAID+L+S+SRV + ++T+ H E A+ ++++++  +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  381  EAEDLINIGAYKSGSNREIDYAVQKINAVNQFLCQRTDEKFLFDEEID  428
            E + +I++G Y++G N + D A+Q  ++++  LCQ   +   FD+ + 
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

406) fliI in NC_006270


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  247 bits (924),  Expect = 8e-67, Method: Compositional matrix adjust.
 Identities = 161/397 (41%), Positives = 271/397 (69%), Gaps = 7/397 (1%)

Query  26   GLMIESKGPECSIGDVCKIYTKGDGPKAI--KAEVVGFKDQNILLMPYLEAANIAPGSIV  83
            G +IE+   + +IG++C I  +G   K +  +A+VVG++ +  +L    +A  ++ + ++
Sbjct  18   GPIIEAELRDVAIGELCEI-RRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVL  76

Query  84   EATGESLRVKVGSGLIGQVVDAFGNPLD---GSVLPKGLAQVSTDQAPPNPMKRPPIREK  140
             +TG +L   VG +++G V+D+ G+ ++     V P +  +V  D APP+   R  +RE 
Sbjct  77   YPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVREP  135

Query  141  MAVGVRSIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARETAADLNVIALVGERGREVRE  200
            +  GVR+ID+LLT G GQR+GIFA++G GK+ LM M+  +T AD+ VI+L+GERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  201  FIEKDLGEEGLKRTIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMFMMDSVTRVA  260
            F++   + +   + ++V ATSD P++ R +AA  AT++AEYFRD+G+ V++ +DS+TR A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  261  MAQREIGLATGEPPTTKGYTPSVFAILPKLLERTGTTESGSITAFYTVLVDGDDMNEPIA  320
             A R+++LA+GE P+ +GY +SVF  LP+LLER G+T  GSITAFYTVL+++++  +P+A
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  321  DTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNIAEKDHIRAANRFREMLSTYQN  380
            D +R+ILDGH+ L R LA +G++PA+++LKS+SRV ++++   H   A+  R +++  ++
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  381  SEDLINIGAYKKGSSREIDEAIQFHPKLISFLKQEVD  417
             + +I++G Y+ G + + D A+Q +  L + L Q V 
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVA  412

407) fliI in NC_006322


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  247 bits (924),  Expect = 8e-67, Method: Compositional matrix adjust.
 Identities = 161/397 (41%), Positives = 271/397 (69%), Gaps = 7/397 (1%)

Query  26   GLMIESKGPECSIGDVCKIYTKGDGPKAI--KAEVVGFKDQNILLMPYLEAANIAPGSIV  83
            G +IE+   + +IG++C I  +G   K +  +A+VVG++ +  +L    +A  ++ + ++
Sbjct  18   GPIIEAELRDVAIGELCEI-RRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVL  76

Query  84   EATGESLRVKVGSGLIGQVVDAFGNPLD---GSVLPKGLAQVSTDQAPPNPMKRPPIREK  140
             +TG +L   VG +++G V+D+ G+ ++     V P +  +V  D APP+   R  +RE 
Sbjct  77   YPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVREP  135

Query  141  MAVGVRSIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARETAADLNVIALVGERGREVRE  200
            +  GVR+ID+LLT G GQR+GIFA++G GK+ LM M+  +T AD+ VI+L+GERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  201  FIEKDLGEEGLKRTIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMFMMDSVTRVA  260
            F++   + +   + ++V ATSD P++ R +AA  AT++AEYFRD+G+ V++ +DS+TR A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  261  MAQREIGLATGEPPTTKGYTPSVFAILPKLLERTGTTESGSITAFYTVLVDGDDMNEPIA  320
             A R+++LA+GE P+ +GY +SVF  LP+LLER G+T  GSITAFYTVL+++++  +P+A
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  321  DTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNIAEKDHIRAANRFREMLSTYQN  380
            D +R+ILDGH+ L R LA +G++PA+++LKS+SRV ++++   H   A+  R +++  ++
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  381  SEDLINIGAYKKGSSREIDEAIQFHPKLISFLKQEVD  417
             + +I++G Y+ G + + D A+Q +  L + L Q V 
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVA  412

408) TOL_2514 in NC_020888


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  246 bits (920),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 174/403 (44%), Positives = 273/403 (68%), Gaps = 7/403 (1%)

Query  38   DVRVGDRCRVER---QQGGDIEAEVVGFDDQRVFLMPIEQVDGLRPGSKVWPLNGAADVP  94
            DV +G+ C + R   Q+     A+VVG++ +R  L  I + +GL  +  + P   A    
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  95   VGFSLLGRVLDGAGRPLDSKGPLVD--IEHGHLQGRPINPLHRAPIREPLDVGIRAINSL  152
            VG+S+LG VLD +G+ ++   P V    E+  ++  P +   R  +REPL  G+RAI++L
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  153  LTVGRGQRIGLFAGSGVGKSVLLGMMTRFTTADVIVVGLIGERGREVKEFIDEILGPEGL  212
            LT G GQR+G+FA++G GK++L+ M+   T ADV+V+GLIGERGREV EF+D + +++  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  213  TRAVVVASPADDSPLMRLRAAAYCTSIAEFFRDQGQNVLLLMDSLTRYAQAQREIALAVG  272
             + V+V + +D +++ R  AA   T++AE+FRDQG+ V+L++DS+TRYA+A R++ALA G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  273  EPPATKGYPPSVFNKLPKLVERTGNGQEGGGSITAFYTVLSEGDDMQDPIADASRAILDG  332
            E PA +GYP+SVF++LP+L+ER G   E  GSITAFYTVL E+++  DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  333  HIVLSRRLAEEGHYPAIDVEASVSRVMPQIVDDSWLQKAQLCKRLMSHHRQNQDLISVGA  392
            H+ LSR+LA +GHYPAIDV  SVSRV  Q+   +  ++A   ++LM++  + Q +I +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  393  YQPGSDQVLDVAIERLPRIKAMLRQGLKEGSSIKESMAALNEL  435
            Y+PG +   D A++    +KA L Q + + SS+ ++++++N +
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

409) Gobs_0975 in NC_013757


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  246 bits (918),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 170/396 (43%), Positives = 272/396 (69%), Gaps = 12/396 (3%)

Query  37   AVGDLVEINPSPSGGLL---AEVVAVSRERLTCMPL-GELSGVHAGARVRATGMPLQVPV  92
            A+G+L EI  +     +   A+VV++ RER   ++L G+  G+  +  + +TG +L   V
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTV-LSLIGNAQGLSRDVVLYPTGRALSAWV  87

Query  93   GEALLGRVLDGLGRPVD----GGPPLDQSLEFVDLASETPHALARTRVEEPLASGVRVLD  148
            G ++LG VLD  G+ V+      +P+ +    +D+A+  P   +R  V EPL +GVR +D
Sbjct  88   GYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAP--PSYASRVGVREPLITGVRAID  144

Query  149  TMVPLGKGQRLGIFAGSGVGKSTLLAQITRGTDADVRVIGLIGERGREVREFLEENLGAE  208
             ++  G GQR+GIFA++G GK+ L+  +   T+ADV VIGLIGERGREV EF++   +++
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  209  GMARTVVVVATSDEPPLVRLKAAFVATRIAEGFRDQGRDVLLMMDSITRTAMAQREVGLS  268
               + V+V ATSD P++ R +AA +AT +AE FRDQG+ V+L +DS+TR A A R+V+L+
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  269  AGEPPATRGYPPSVFAMMPKLLEKAGTAAVGSITGLYTVLVDGDDHNEPIADTARSILDG  328
            +GE PA RGYP+SVF  +P+LLE++G+++ GSIT++YTVL++++++ +P+AD  RSILDG
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  329  HVVLTRKLATAGHFPAIDVLESISRVATAVVPPAQMADAREVRRLMGALRDVKELIEIGA  388
            H+ L+RKLA  GH+PAIDVL S+SRV   V  P++  +A  VR+LM  L +++ +I++G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  389  YQAGTDPLVDRARQLAPAIESFLQQPTGELTPAGDS  424
            Y++G +   DRA Q+  ++ + L QP ++ ++ +D+
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

410) PC1_2208 in NC_012917


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  246 bits (920),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 179/424 (43%), Positives = 293/424 (70%), Gaps = 17/424 (4%)

Query  37   VSGILLECSLPQARIGDLC-----WVARQDDSQMMAEVVGFSPDNTFLSALGALDGIAQG  91
            ++G ++E  L +  IG+LC     W  +Q  ++  A+VVG+  + T LS +G  +G++++
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVAR--AQVVGLQRERTVLSLIGNAQGLSRD  73

Query  92   ATVTPLYQPHCIQVSERLLGSVLDGFGRALEDDGESAFVEPGHATGRTQPVLGDAPPP-T  150
              + P  ++    V+  +LG+VLD  G+ +E      F  P  A    + V++ APP+ +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVER-----FT-PEVAPISEERVIDVAPPSYA  127

Query  151  SRPRISQPLPTGLRAVDGLLTIGQGQRVGIFAGAGCGKTTLLAELARNTPCDAIVFGLIG  210
            SR  + +PL TG+RA+DGLLT G GQR+GIFA+AGCGKT L+  L  +T  D +V+GLIG
Sbjct  128  SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIG  187

Query  211  ERGRELREFLDHELDDELRSRTVLVCSTSDRSSMeraraaftataiaeayraeGRQVLLI  270
            ERGRE+ EF+D     + + + VLV +TSD +S++R  AA  AT++AE +R +G++V+L+
Sbjct  188  ERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLF  247

Query  271  IDSLTRFARAQREIGLALGEPQGRGGLPPSVYTLLPRLVERAGQTEDGAITALYSVLIEQ  330
            IDS+TR+ARA R+++LA GE  +R G P+SV+  LPRL+ER+G T +G+ITA+Y+VL+E 
Sbjct  248  IDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLES  307

Query  331  DSMNDPVADEVRSLIDGHIVLARRLAEQGHYPAIDVLASLSRTMSNVVDTDHTRNAGGVR  390
            +   DP+ADE+RS++DGH+ L+R+LA QGHYPAIDVL S+SR  ++V    H+ +A++VR
Sbjct  308  EEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVR  367

Query  391  RLMAAYKQVEMLIRLGEYQPGHDVLTDSAVNAHAEITQFLRQSMREPMPYGVIQQQLAGV  450
            +LM+   +++++I LGEY+PG+++  D A++ +  +   L Q++ +   Y+ +++ L+G+
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ---YSSFDDTLSGM  424

Query  451  SRYA  454
            + +A
Sbjct  425  NAFA  428

411) PCC21_022860 in NC_018525


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  246 bits (918),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 179/424 (43%), Positives = 293/424 (70%), Gaps = 17/424 (4%)

Query  37   VSGILLECSLPQARIGDLC-----WVARQDDSQMMAEVVGFSPDNTFLSALGALDGIAQG  91
            ++G ++E  L +  IG+LC     W  +Q  ++  A+VVG+  + T LS +G  +G++++
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVAR--AQVVGLQRERTVLSLIGNAQGLSRD  73

Query  92   AAVTPLYQPHCIQVSERLLGSVLDGFGRSLEDGGESAFVEPGHASGRTQPVLGDAPPP-T  150
              + P  ++    V+  +LG+VLD  G+ +E      F  P  A+   + V++ APP+ +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVER-----FT-PEVAPISEERVIDVAPPSYA  127

Query  151  SRPRISQPLPTGLRAVDGLLTIGQGQRVGIFAGAGCGKTTLLAELARNTPCDAIVFGLIG  210
            SR  + +PL TG+RA+DGLLT G GQR+GIFA+AGCGKT L+  L  +T  D +V+GLIG
Sbjct  128  SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIG  187

Query  211  ERGRELREFLDHELDDELRSRTVLVCSTSDRSSMeraraaftataiaeayraeGRQVLLI  270
            ERGRE+ EF+D     + + + VLV +TSD +S++R  AA  AT++AE +R +G++V+L+
Sbjct  188  ERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLF  247

Query  271  IDSLTRFARAQREIGLALGEPQGRGGLPPSVYTLLPRLVERAGQTEDGAITALYSVLIEQ  330
            IDS+TR+ARA R+++LA GE  +R G P+SV+  LPRL+ER+G T +G+ITA+Y+VL+E 
Sbjct  248  IDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLES  307

Query  331  DSMNDPVADEVRSLIDGHIVLARRLAEQGHYPAIDVLASLSRTMSNVVDTDHTRSAGGVR  390
            +   DP+ADE+RS++DGH+ L+R+LA QGHYPAIDVL S+SR  ++V    H+  A++VR
Sbjct  308  EEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVR  367

Query  391  RLMAAYKQVEMLIRLGEYQPGHDVLTDSAVNAQAEITQFLRQSMREPMPYGVIQQQLAGV  450
            +LM+   +++++I LGEY+PG+++  D A++ +  +   L Q++ +   Y+ +++ L+G+
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ---YSSFDDTLSGM  424

Query  451  SRYA  454
            + +A
Sbjct  425  NAFA  428

412) Swol_0852 in NC_008346


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  246 bits (917),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 170/407 (42%), Positives = 277/407 (69%), Gaps = 16/407 (3%)

Query  33   GLTIEATGPRVRMGELCFLQTNYSDRQLVP-AEVVGFKDKKILLMPLGNLEGIGPGSELL  91
            G  IEA    V +GELC ++    ++Q+V+ A+VVG++  + +L  +GN +G++ +  L 
Sbjct  18   GPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLY  77

Query  92   ASGTTLRVQVGMELVGRVLNGLGEPIDDRGRIKSETTYPVTNQ------PPSPLKRKRIT  145
            ++G +L   VG  ++G VL+  G  ++   R+ +E + P++++      PPS   R  + 
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVE---RFTPEVA-PISEERVIDVAPPSYASRVGVR  133

Query  146  EVLQVGVKAIDGLVSIGKGQRMGILAGSGVGKSTLIGMIARNTEADINVIALIGERGREV  205
            E L  GV+AIDGL++ G GQRMGI+A++G GK+ L+ M+  +TEAD+ VI+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  206  REFLERDLGEEGLGKSVVVVATSDQPALVRLKGAFVATSIAEYFRDQGKDVLFLMDSVTR  265
             EF++   + +   K V+V ATSD P++ R ++A +AT++AEYFRDQGK V++++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  266  FALAQREVGLAIGEPPATRGYTPSVFAMLPKLLERAGTSEKGTITGLYSVLVEGDDLNEP  325
            +A A R+V+LA GE PA RGY +SVF  LP+LLER+G++  G+IT++Y+VL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  326  ITDAVRGILDGHIALSRSLAAMNLYPAIDVGQSISRVMIDIASPKHIKNANRFRSILATY  385
            ++D +R+ILDGH+ LSR LA+   YPAIDV +S+SRV  ++++P H  +A+  R +++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  386  EEARDLIDIGAYKKGSNPRIDESIALIDK-----CQNFIRQDIYDEA  427
            EE + +ID+G Y+ G N   D ++ + D      CQ   +   +D++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

413) escN in NC_013353


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  245 bits (915),  Expect = 4e-66, Method: Compositional matrix adjust.
 Identities = 164/346 (48%), Positives = 252/346 (73%), Gaps = 4/346 (1%)

Query  99   GDEFKIRVGDELLGRLVDGIGRPMGSNITAPYLPF--ERSLYAEPPDPLLRQVIDQPFTL  156
            G  +  +VG  +LG ++D  G+ +   +T+   P+  ER +   PP    R  + +P+  
Sbjct  80   GRALSAWVGYSVLGAVLDPTGK-IVERFTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  157  GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA  216
            GVRAIDGLLTCG+GQR+GIFA++G GK+ L+ M+ + + AD++V++LIGERGREV EF+ 
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  217  LLPQS-TLSKCVLVVTTSDRPALERMKaaftattiaeffRDQGKNVLLMMDSVTRYARAA  275
            +L  S    KCVLV +TSD P+++R +AA  ATT+AE+FRDQGK V+L +DS+TRYARA 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  276  RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEV  335
            RDV+LASGE   R G+P+SVF +LP+LLER+G+++ GSITA+YTVLLES++  DP++DE+
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEI  318

Query  336  RSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNIEL  395
            RSILDGH+ L+R LA + H+PAID+  S SRV  +V T+ H   A+  +KL++   +++L
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  396  LIRIGEYTMGQDPEADKAIKNRKAIQSFIQQSTKDISSYEKTIESL  441
            +I +GEY  G++ + D+A++ R ++++ + Q+  + SS++ T+ ++
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

414) fliI in NC_009138


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  245 bits (915),  Expect = 4e-66, Method: Compositional matrix adjust.
 Identities = 148/352 (43%), Positives = 247/352 (71%), Gaps = 4/352 (1%)

Query  75   PSDRTRHLPVGMELLGRVLDGAGRPLDSLGP--LHATHSGPLNVRAANPLTRAPITDVLD  132
            P++R+    VG  +LG VLD +G+ ++ + P     ++   ++V +++  +R  + + L 
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLI  137

Query  133  VGVRAINSMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTTADVIVVGLIGERGREVKEFI  192
             GVRAI+++LT G GQRMG+FA++G GK++L+ M+   T ADV+V+GLIGERGREV EF+
Sbjct  138  TGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFV  197

Query  193  EQILGPEGLARSVVVAAPADTPPLMRLQGAAYTTAIAEHFRDEGKDVLLIMDSLTRYAMA  252
            + + +++   + V+V A +D P++ R ++A  +T++AE FRD+GK V+L++DS+TRYA A
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  253  QREIALAIGEPPATKGYPPSVFAKLPALVERAGNGKEGGGSITAFYTVLTEGDDQQDPIA  312
             R++ALA GE PA +GYP+SVF +LP L+ER+G   E  GSITAFYTVL E++++ DP+A
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMA  315

Query  313  DAARAILDGHIVLNRSLAEAGHYPAIDIEQSISRAMHNITTPEHQKQTRKLKQLTSRYQR  372
            D  R+ILDGH+ L+R LA  GHYPAID+ +S+SR   ++TTP H  Q+  +++L +R + 
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  373  NRDLISVGAYSAGSDPVLDEAIALNTKIESFLQQDITERSGINESLGQLASL  424
             + +I +G Y +G +   D A+ +   + + L Q +++ S+++++L+ + ++
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

415) Bxe_A3118 in NC_007951


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  245 bits (913),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 157/370 (43%), Positives = 261/370 (71%), Gaps = 19/370 (5%)

Query  60   GEVVGFTHDGALVMPLAGLNGLSDITEVQGCG---SAWGTFDAAGLLGRVVDGLGNPLDG  116
            ++VVG+ ++ +++  ++  +GLS    +   G   SAW  +   ++LG V+D  G+ ++ 
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY---SVLGAVLDPTGKIVE-  104

Query  117  GPVPRPLASAAAQAGEGTLNPLERPVIAT------PFATGVRAIDGLLTCGVGQRTGIFA  170
                  +++  A  +E  +  +  P  A+      P+ TGVRAIDGLLTCGVGQR GIFA
Sbjct  105  -----RFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFA  159

Query  171  PAGGGKSTIMGMIANGASTDAIVVALIGERGREVAEFIHD-HLERRRASTIVIAATSDRP  229
            +AG GK+ +M M+ + + +D +V++LIGERGREV+EF++  +  +++   +++ ATSD P
Sbjct  160  SAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFP  219

Query  230  AAERIKAAELASQVAVGLRASGRNVLLLFDSLTRYARALRELGLAVGEPPLRGGFPPSVF  289
            + +R +AA+LA+ VA  +R  G+ V+L++DS+TRYARALR+++LA GE P R G+P+SVF
Sbjct  220  SVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVF  279

Query  290  AQLPRLIEAAGVTAQGSITAFYTVLADEADLSDPVAEEARSLLDGHIQLSSKLGAAGHYP  349
             +LPRL+E +G T++GSITAFYTVL +  + +DP+A+E RS+LDGH+ LS KL++ GHYP
Sbjct  280  DNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYP  339

Query  350  AIDILRSRSRLMTRVAAAVHQADANRVRDWLARYEDVELLLQIGEYQRGNDADTDQAIDR  409
            AID+L+S SR+  +V+++ H  +A+ VR  ++R E+++L++++GEY+ G++ D D+A++ 
Sbjct  340  AIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQM  399

Query  410  RAAIVSFLRQ  419
            R ++ + L Q
Sbjct  400  RDSLKAWLCQ  409

416) Dtox_0691 in NC_013216


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  245 bits (913),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 169/397 (43%), Positives = 269/397 (68%), Gaps = 10/397 (2%)

Query  45   SIGEVCHVIVPGRSRPIVA--EVVGFMQGASILMPLGELQGIQPGNQVVPTGRNLTVEVS  102
            +IGE+C++    + + +VA  +VVG+ +  ++L  +G+ QG+  +  + PTGR L+  V+
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  103  DDMLGSVLDGLGRQIG-----GKTAGEQKTKFPVDNQPPNPLTRQRIAQVLPTGVRAIDS  157
              +LG+VLD  G+ +          +E++    +D  PP+  +R  + + L TGVRAID+
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERV---IDVAPPSYASRVGVREPLITGVRAIDG  145

Query  158  VLTCGQGQRIGIFAGSGVGKSTLLGMIAKYGKADVNVIGLIGERGREVKDFIETDLGEEG  217
            +LTCG GQR+GIFA++G GK+ L+ M+     ADV VIGLIGERGREV +F++   + + 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  218  LSRSVVVAATSDQPALIRLKGAMVATALAEYFRNKGLNVMLLMDSVTRFAMAQREVGLAV  277
              + V+V ATSD P++ R ++A +AT++AEYFR++G  V+L++DS+TR+A A R+V+LA 
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  278  GEPPATKGYTPSVFALLPKLLERSGMSVEGSITAFYTVLVDGDDMNEPIADAVRGILDGH  337
            GE PA +GY +SVF  LP+LLER+G + EGSITAFYTVL+++++  +P+AD +R+ILDGH
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  338  IVLTRRLAAKNHYPAIDVLSSVSRVMSDIVNPEHlsraarlrellsTYLQAEDLISIGAY  397
            + L+R+LA++ HYPAIDVL SVSRV +++  P H  +A+ +R L++   + + +I +G Y
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  398  NFGANPKIDDAIRHYDNIIEFLRQHPEEPYEFSETID  434
              G N   D A++  D++   L Q   +   F +T+ 
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

417) Hipma_1198 in NC_015318


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  245 bits (913),  Expect = 6e-66, Method: Compositional matrix adjust.
 Identities = 173/418 (42%), Positives = 281/418 (68%), Gaps = 13/418 (3%)

Query  24   KKVAGITIKSTGPKNVKIGDVCKIETDEGWID------SEVVGFDEDGVVLMPLGVLDGV  77
            +K++G  I  +  ++V IG++C I    GW +      ++VVG++ +  VL  +G  +G+
Sbjct  14   QKITG-PIIEAELRDVAIGELCEIRR--GWHQKQVVARAQVVGLQRERTVLSLIGNAQGL  70

Query  78   KSLSLVKSEGRGLSVPVSERLLGRVVNALGRPID--GKGpipveeyypvypkpvppleRQ  135
                ++ + GR+LS  V+  +LG V+++ G+ ++       P+ E   +   P +   R 
Sbjct  71   SRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRV  130

Query  136  IIKEPLSLGVKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNSSADVNVIALIGERG  195
             ++EPL  GV+AIDGLLT G GQR+GIFA++G GK+ L+ M+  ++ ADV VI+LIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  196  REVREFIERDLKEEGLK-RSVVVVATSDEASLLRREGAFVATSIAEFFKDRGANVMLMMD  254
            REV EF++  L+    K + V+V ATSD +S+ R ++A +AT++AE+F+D+G  V+L +D
Sbjct  191  REVTEFVDM-LRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFID  249

Query  255  SATRFAMAQREIGLAVGEPPTTKGYTPSVFTLLPRLMERAGNFNKGSITAIYTVLVDGDD  314
            S TR+A A R+++LA GE P+ +GY +SVF  LPRL+ER+G  + GSITA+YTVL+++++
Sbjct  250  SMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEE  309

Query  315  LMEPIADASRSILDGHIVLSRKIAERGRYPAVDVLRSISRLMSSITTDEHKELALKIRKV  374
              +P+AD  RSILDGH+ LSRK+A +G+YPA+DVL+S+SR+ + +TT  H E A  +RK+
Sbjct  310  EADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKL  369

Query  375  LSVYADAEDLINIGAYVKGSNKDIDEAIKYIDKVEGFLAQKIEESFSFEDTLNLMRGI  432
            ++   + + +I++G Y  G N D D A++  D + + L Q + +  SF+DTL+ M ++
Sbjct  370  MTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

418) Ppro_3429 in NC_008609


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  245 bits (913),  Expect = 6e-66, Method: Compositional matrix adjust.
 Identities = 169/413 (41%), Positives = 279/413 (68%), Gaps = 5/413 (1%)

Query  29   QVVGLVIEGYCPDTSVGAICEIR---PQVGEPIPAEVVGFRNNKTLLMPLGELRGVGLDS  85
            ++ G +IE+   D ++G +CEIR    Q      A+VVG++ ++T+L  +G+ +G++ D 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  86   LISIRREQASMGVGPLMLGRVIDGLGNPIDDRGP--LHVEEEYPIYATPVNPMTRPPIRK  143
            ++       S  VG  +LG V+D  G+ ++   P    + EE  I  +P +  +R  +R 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  144  PLDLGIRSINGLLTCGQGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGRELR  203
            PL  G+R+I+GLLTCG GQR+GI A++G GK+ L+ M+   TEADV VI+LIGERGRE+ 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  204  EFIEKDLQEIGLKKSVVVVATSDQPPLVRMRGAYIATTIAEYFQKQGKKVLLMMDSVTRF  263
            EF++         K V+V ATSD P++ R  +A +ATT+AEYF+ QGK+V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  264  AMAMREVGLAIGEPPTTKGYTPSVFAALPKLLERAGNFTDGSITGLYTVLVEGDDFNEPI  323
            A A+R+V+LA GE P+ +GY +SVF  LP+LLER+G  ++GSIT++YTVL+E+++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  324  SDAVRSILDGHIVLTRNLASRNIYPPIDILASASRVMNDVTVTDHQELVGKFKEAMATYR  383
            +D +RSILDGH+ L+R+LA++  YP+ID+L S SRV  +VT   H E  +  +  M+   
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  384  QSEDLINIGAYKSGSNPGIDYAISKMDGMTAYLKQAVRDPANLQESVESLKAL  436
            + + +I++G Y++G N + D A+   D++ A L Q+V + +++++++ +++A+
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

419) fliI in NC_007503


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  244 bits (910),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 174/424 (42%), Positives = 280/424 (67%), Gaps = 22/424 (5%)

Query  26   RQVIGLTVEAHGLKVSVGETVEILAG--NARVLA--EVVGFKEENAILMPLGEINGISLG  81
            +++ G  +EA+   V++GE  EI  G  + +V+A  +VVG++ E ++L  +G+ +G+S +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  82   SLVRPLRRQLQITVGKSLLGKVLDGLGR----------PLNADKIYGRHFSLDRKPPKPL  131
             ++ P  R L   VG S+LG VLD  G+          P++ +++      +D  PP   
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV------IDVAPPSYA  127

Query  132  HRRRIKKPFATGIKAIDGPLTCGEGQRLGIFAGSGVGKSTLLGMIARYAEADVNVIALIG  191
             R  ++ P+ TG++AIDG LTCG GQR+GIFA++G GK+ L+ M+   +EADV VI+LIG
Sbjct  128  SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIG  187

Query  192  ERGREVLDFIEN-DLGEGIKKSVLVVATSEQPALFRVKGAFVATAIAEYFREQGKKVLLM  250
            ERGREV +F++    ++   K VLV ATS+ P++ R ++A +AT++AEYFR+QGK+V+L 
Sbjct  188  ERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLF  247

Query  251  MDSLTRFAMAQREIGLAAGEPPSSRGYTPSVFALLPKLVERAGNDDKGSITAFYTVLVEG  310
            +DS+TR+A A R+++LA+GE P+ RGY +SVF  LP+L+ER+G    GSITAFYTVL+E+
Sbjct  248  IDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLES  307

Query  311  DDFNEPIADAVRGLLDGHIVLSRQLAGKGHYPAIDLLASNSRLMPELVDEQHLALTLKMR  370
            ++  +P+AD +R++LDGH+ LSR+LAG+GHYPAID+L S SR+  ++    H   +  +R
Sbjct  308  EEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVR  367

Query  371  EILDIYRQNEDLILIGAYKPGTNPLLDRAIQLVPKINQFLQQKQNEKVDFTTTKEMLKTL  430
             ++    + + +I +G Y+PG N   DRA+Q+   ++  L Q   +   F  T   +++ 
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA-  426

Query  431  FVEE  434
            F ++
Sbjct  427  FADQ  430

420) Dbac_3032 in NC_013173


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  244 bits (910),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 169/421 (41%), Positives = 288/421 (69%), Gaps = 11/421 (2%)

Query  26   KVVGLVAEGRGIKAPLGSVCQLLPDDTGKQVIN-AEVVGFRDDVMLLMPYGEMRGIRPGS  84
            K+ G + E+     ++G +C++  +   KQV+  A+VVG++ +  +L   G+ +G+  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  85   LIRNTSTPPVFPVGNRYLGQAVDAFGQSLDPEKSIFPARYNPLHAD------PPNPLTRP  138
            ++  T+ +    VG   LG  +D+ G+ ++     F +   P+  +      PP+  +R 
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVER----FTPEVAPISEERVIDVAPPSYASRV  130

Query  139  RITEPLDVGVRAVNGLLTLGKGQRVGIMAGSGVGKSTLMGMFARYTSAEVNVIGLIGERG  198
             + EPL  GVRA++GLLT G GQR+GI A++G GK+ LM M+   T A+V VIGLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  199  REVVDFIEKDLGPEGLAKSVLIVATSDQGPLVrmraayaatamaEFFRDEGKDVLLMMDS  258
            REV +F++   +++   K VL+ ATSD  ++ R  AA  AT++AE+FRD+GK V+L +DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  259  VTRFAMAAREVGLAAGEPPTTRGYTPTVFSHLPRLLERAGRSSKGSITGIYTVLVEGDDF  318
            +TR+A A R+V+LA+GE P+ RGY ++VF +LPRLLER+G +S GSIT++YTVL+E+++ 
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  319  NEPVADAVRSILDGHIVLTRDLADQGHYPSIDVLKSVSRLAPDVTPAPVIAAGRDLIRMM  378
             +P+AD +RSILDGH+ L+R LA+QGHYP+IDVLKSVSR+  +VT +     +  + ++M
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  379  ATFQRVEDMVNIGAYAAGSNPEIDQALNMVHPIRAFLQQSVEERSTLDQAFEDLKKLTGR  438
            + ++ ++  +++G Y +G N + D+A++M ++++A L Q+V + S++D+++ +++ ++++
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQ  430

Query  439  N  439
            N
Sbjct  431  N  431

421) ROI_20930 in NC_021040


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  244 bits (910),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 167/408 (41%), Positives = 283/408 (70%), Gaps = 4/408 (0%)

Query  24   KIVGLTIESVGPNAKLNDLCRIIIDREQN-ISTMAEVVGFRDKHLLLMPFESVEGIGVGC  82
            KI G  IE+   +  + +LC I  +++Q+ + + A+VVG++  + +L  + + +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  83   IVENTGHPLTVKVGEELLGHTLDGIGRPTD---VEELSLSYDYPVEALPPDPMARKIIDE  139
            ++  TG++L+  VG  +LG  LD  G+  +    E  ++S +  ++  PP   +R  + E
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  140  VLPLGVKAVDGLITVGKGQRIGIFAGSGVGKSTLLGMFARNTKADINVIALIgergrevr  199
             L  GV+A+DGL+T G GQR+GIFA++G GK+ L+ M+  +T AD+ VI+LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  200  efverDLGEEGMKRSVVIVATSDKPALIRNKAAKTATAIAEYFRDQGKDVLLMMDSLTRF  259
            EFV+   + +   + V++ ATSD P++ R +AA+ AT++AEYFRDQGK V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  260  SMAQREIGLASGEPPVTRGYPPSVYSEMPKLLERAGTSDKGSITGLYTVLVDGDDMNEPI  319
            + A R+++LASGE P  RGYP+SV+ ++P+LLER+G++  GSIT++YTVL+++++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  320  TDTARSILDGHIMLSRKLGQKNHYPAIDVLQSISRVMSSIATSEHKELAGKLRNVMATYN  379
            +D  RSILDGH+ LSRKL+ + HYPAIDVL+S+SRV + ++T+ H E A+ +R++M+  +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  380  EAEDLINIGAYKNGTNREIDYAIQKNQAVNEFLMQKTDEKFEFNEEID  427
            E + +I++G Y+ G N + D A+Q  ++++  L Q   +   F++ + 
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

422) escN in NC_013361


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  244 bits (912),  Expect = 7e-66, Method: Compositional matrix adjust.
 Identities = 163/346 (48%), Positives = 251/346 (73%), Gaps = 4/346 (1%)

Query  99   GEEFKIRVGDELLGRLVDGIGRPMGSNITAPYLPF--ERSLYAEPPDPLLRQVIDQPFTL  156
            G  +  +VG  +LG ++D  G+ +   +T+   P+  ER +   PP    R  + +P+  
Sbjct  80   GRALSAWVGYSVLGAVLDPTGK-IVERFTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  157  GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA  216
            GVRAIDGLLTCG+GQR+GIFA++G GK+ L+ M+ + + AD++V++LIGERGREV EF+ 
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  217  LLPQS-TLSKCVLVVTTSDRPALERMKaaftattiaeffRDQGKNVLLMMDSVTRYARAA  275
            +L  S    KCVLV +TSD P+++R +AA  ATT+AE+FRDQGK V+L +DS+TRYARA 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  276  RDVGLASGEPDVRGGFPPSVFASLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEV  335
            RDV+LASGE   R G+P+SVF +LP+LLER+G+++ GSITA+YTVLLES++  DP++DE+
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEI  318

Query  336  RSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVKSEHLRAAAECKKLIATYKNIEL  395
            RSILDGH+ L+R LA + H+PAID+  S SRV  +V  + H   A+  +KL++   +++L
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  396  LIRIGEYTMGQDPEADKAIKNRKAIQSFIQQSTKDISSYEKTIESL  441
            +I +GEY  G++ + D+A++ R ++++ + Q+  + SS++ T+ ++
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

423) PBPRA0025 in NC_006370


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  244 bits (912),  Expect = 7e-66, Method: Compositional matrix adjust.
 Identities = 154/354 (44%), Positives = 246/354 (70%), Gaps = 8/354 (2%)

Query  64   AEVVGFDRNASVLMPIRHTTGLRPGSRVFPLHGDSKINVGYSMLGRVLNGLGEPLD----  119
            A+VVG++R+ +VL  I ++ GL  +  ++P        VGYS+LG VL+  G  ++    
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  120  SRGPITADQRINLQGETINPLQRLPISTQLDVGVRVINSMLSVGKGQRMGLFAGSGVGKS  179
              +PI+ ++ I++   +  +  R+ +   L  GVR I+++L+ G GQRMG+FA++G GK+
Sbjct  109  EVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKT  166

Query  180  VLLGMMTRNTTAEITVVGLIGERGREVREFIEHSLGPEGMKNAVVIASPADDPPLMRLRA  239
            +L+ M+  +T A++ V+GLIGERGREV EF++   +++   + V++ + +D P++ R  A
Sbjct  167  MLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNA  226

Query  240  SMLCHRIAEFFRDQGHDVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFSMLPQLV  299
            + L   +AE+FRDQG  V+L++DS+TRYA+A R++ALA GE PA +GYP+SVF  LP+L+
Sbjct  227  AQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLL  286

Query  300  ERAGNGATEKGSITAFYTVLSEGDDQQDPIADAARAILDGHIVLNRELAEQGHYPAIDIE  359
            ER+  GAT  GSITAFYTVL E++++ DP+AD  R+ILDGH+ L+R LA QGHYPAID+ 
Sbjct  287  ERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVL  344

Query  360  QSISRAMPQVVTPEQLQKAQQVKQLYARYRQVQDLISLGGYQQGQDQNLDMAVH  413
            +S+SR   QV TP + ++A  V++L +R  ++Q +I LG Y+ G++ + D A++
Sbjct  345  KSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQ  398

424) Q91_0720 in NC_018697


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  244 bits (912),  Expect = 8e-66, Method: Compositional matrix adjust.
 Identities = 164/384 (43%), Positives = 262/384 (69%), Gaps = 4/384 (1%)

Query  70   AEVVGFSGERLYLMPTGDIRGLEQDCRVIPMGLSSMAHVGPGLLGRvvdgggkpid--gk  127
            A+VVG+  ER  L   G+ +GL +D  + P G +  A VG ++LG V+D  GK ++    
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  128  gpVHTTDTMPLHGRAMNPLGRRAITEPLDVGIGTINSLLTVGQGQRIGLFAGSGVGKSVL  187
                 ++   ++  + +  +R ++ EPL  G+ +I++LLT G GQR+G+FA++G GK++L
Sbjct  109  EVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTML  168

Query  188  LGMMTKYTKADVVVVGLIGERGREVNEFVRKTLGAEGMARAVVVASPADDPPLMRMHGAM  247
            + M+   T ADV V+GLIGERGREV EFV    +++   + V+V + +D P++ R ++A 
Sbjct  169  MHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQ  228

Query  248  LATSIAEYFRDQGKNVLLLMDSLTRYAQAQREIALAINEPPATKGYPPSVFSKLPSLVER  307
            LAT++AEYFRDQGK V+L++DS+TRYA+A R++ALA  E PA +GYP+SVF +LP L+ER
Sbjct  229  LATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLER  288

Query  308  AGNSDKGNGSITAFYTVLTEGDDTNDPIADASRAILDGHIHLSRRLAEAGHFPAIDMEAS  367
            +G +  ++GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR+LA  GH+PAID+  S
Sbjct  289  PGAT--SEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKS  346

Query  368  VSRLMTEIVPEDHQEMAREFRKINSTYQQNADLINVGAYQPGSNSSVDEAIDMHESMLEF  427
            VSR+  ++    H E A   RK+ +  ++   +I++G Y+PG N   D A++M++S+   
Sbjct  347  VSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAW  406

Query  428  LQQRITESVSFDESIEGLESVLQH  451
            L Q +++  SFD+++ G+++  ++
Sbjct  407  LCQPVAQYSSFDDTLSGMNAFADQ  430

425) Daro_0770 in NC_007298


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  244 bits (912),  Expect = 8e-66, Method: Compositional matrix adjust.
 Identities = 162/381 (43%), Positives = 260/381 (69%), Gaps = 9/381 (2%)

Query  98   SKVVAVE-SPNMLPKLGGPPPFRRRAI----DRAKQGPVGEELLGRVLDGVGRPLDNKGP  152
            ++VV+++    +L+ +G +  + R  +    +RA  + VG  +LG VLD  G+ ++   P
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  153  LIA--AETRPLQSRPINPMSRAAIHQPLDVGIRAINALLTVGRGQRMGLFAGSGVGKSVL  210
             +A  +E R ++  P +  SR ++++PL  G+RAI++LLT G GQRMG+FA++G GK++L
Sbjct  109  EVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTML  168

Query  211  LGMMARYTEAEVIVVGLIGERGREVKEFIEQILGEEGMRRSVVVAAPADTGPLMRLQGAA  270
            + M+   TEA+V+V+GLIGERGREV EF++ + + +   + V+V A +D  ++ R ++A 
Sbjct  169  MHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQ  228

Query  271  YATTIAEYFRDQGKHVLLIMDSLTRYAMAQREIALAIGEPPATRGYPPSVFARLPQLVER  330
             ATT+AEYFRDQGK+V+L++DS+TRYA A R++ALA GE PA RGYP+SVF  LP+L+ER
Sbjct  229  LATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLER  288

Query  331  AGNGQEGGGSITAFYTVLAEGDDQQDPIADSARAILDGHIVLSRTLADAGHYPAIDIEQS  390
            +G   E  GSITAFYTVL E++++ DP+AD  R+ILDGH+ LSR LA+ GHYPAID+ +S
Sbjct  289  PGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKS  346

Query  391  ISRAMVNLIDAPHLDQIRKFKVLFARYQRSRDLISVGAYAPGSDPVLDQAISLYPRMESF  450
            +SR   ++  + H +Q    + L +R +  + +I +G Y PG +   D+A+ +   + + 
Sbjct  347  VSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAW  406

Query  451  LQQQLIEQSDFPSSLEALKTL  471
            L Q + + S F  +L +++++
Sbjct  407  LCQPVAQYSSFDDTLSGMNAF  427

426) CFSAN002050_13470 in NC_021818


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (908),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 174/385 (46%), Positives = 272/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADCNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDNDKAID  401
            +E++L+I +GEY+ G + DND+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

427) Spica_1667 in NC_015732


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (908),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 174/417 (42%), Positives = 278/417 (67%), Gaps = 8/417 (1%)

Query  29   KVQGLLIESRGPQAIIGEVCRIYAPKGRG----VIRAEVVGLRGETVQLMAYDETTGIEV  84
            K+ G +IE+   +  IGE+C I   +G+     V RA+VVGL+ E   L   +++ G+  
Sbjct  15   KITGPIIEAELRDVAIGELCEI--RRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSR  72

Query  85   GNRVVSTGELLSIPVSTKLLGRVLDALGKPTDG-KGDIEapqyypaqadppnpLQRKR-I  142
            +  + +TG  LS  V+  +LG VLD+ GK  +    ++ +         +P +   +  +
Sbjct  73   DVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  143  TERIVTGVRAIDGLLPIGKGQRMGIFAGSGVGKSTLLGMIARNTSADVNVVALIGERGRE  202
             E ++TGVRAIDGLL  G GQRMGIFA++G GK+ L+ M+  +T ADV V++LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  203  VNDFIANDLGPEGLarsvivvspssapplsrlrGAYVATAVAEYFRDQGLDVMLLFDSVT  262
            V +F+    +++   + V+V + S  P++ R  +A +AT+VAEYFRDQG  V+L++DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  263  RFARAQREIGLAIGEPPATRGYPPSVFDSMPKLLERCGTSDKGTITGFYTILVDGDDMDE  322
            R+ARA R+++LA GE PA RGYP+SVFD++P+LLER G++  G+IT+FYT+L+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  323  PIADTVRGILDGHMVLSRRLAERYHYPAIDILSSVSRLAPVVAGPVTKKAGGYIRRLMAV  382
            P+AD +R+ILDGH+ LSR+LA + HYPAID+L SVSR+   V+ P     ++ +R+LM+ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  383  YAEAEDLIDVGAYKPGSNPAIDEAIAKKSAIDNFLIQAVEEKNSIQETLQTLGNLAN  439
              E + +ID+G Y+PG N   D A+  + ++   L Q+V + +S+++TL  +  +A+
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

428) SBOV14121 in NC_022241


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (907),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 175/386 (46%), Positives = 271/386 (71%), Gaps = 11/386 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRALPDVCW----KDYDAMPPPAMVRQPI  135
              + +  R     VG ++LG V+D  G+ ++ R  P+V      +  D  PP+   R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  136  TQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADCNVLVLIGERGRE  195
             +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  196  VREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLT  255
            V EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  256  RYaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNE  315
            RYARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  316  PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLAL  375
            P+ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  376  YQEVELLIRIGEYQRGVDTDTDKAID  401
             +E++L+I +GEY+ G + D D+A++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQ  398

429) SE451236_12940 in NC_021820


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

430) SeAg_B1758 in NC_011149


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADCNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

431) SEEB0189_12460 in NC_021844


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (907),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTTGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADCNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

432) SEEH1578_16310 in NC_021810


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (906),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADCNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

433) SU5_02031 in NC_017623


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (906),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADCNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

434) CFSAN002069_01925 in NC_021812


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (906),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADCNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

435) SeHA_C1548 in NC_011083


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (906),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADCNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

436) CFSAN001992_04515 in NC_020307


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

437) SNSL254_A1526 in NC_011080


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

438) SSPA1336 in NC_011147


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

439) ssaN in NC_006511


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

440) SPAB_01910 in NC_010102


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

441) SeSA_A1511 in NC_011094


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVTALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

442) ssaN in NC_016856


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

443) STMMW_14201 in NC_016854


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

444) ssaN in NC_003197


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

445) ssaN in NC_016810


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

446) ssaN in NC_016857


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

447) STMDT12_C14310 in NC_016860


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

448) STU288_03395 in NC_021151


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

449) ssaN in NC_016863


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

450) CFSAN001921_10070 in NC_021814


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

451) Mahau_0855 in NC_015520


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 183/426 (43%), Positives = 285/426 (67%), Gaps = 9/426 (2%)

Query  17   IEYKGAVSRLTGLTIEADGPGVEIGRLCKIL--SQDGSISAIAEVVGFREERMLLMPLGN  74
            ++Y +   ++TG  IEA+  +V IG LC I    ++  + A A+VVG++ ER +L  +GN
Sbjct  7    LQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGN  66

Query  75   VKGIGPGSTVIAMNTSLTVPAgpgllgrvldglgrpMD----SAGPLAADMYYDVEKDPP  130
             +G++ +  + +   +L+   G ++LG VLD  G+ ++      +P++ +   DV   PP
Sbjct  67   AQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV--APP  124

Query  131  DPLTRQRICEPIVLGIKAIDGLLTCGYGQRMGVFAGSGVGKSTLMGMMARYASADVNVIA  190
               +R  + EP++ G++AIDGLLTCG GQRMG+FA++G GK+ LM M+   + ADV VI+
Sbjct  125  SYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIG  184

Query  191  LIGERGREVKEFIEK-DLGEGLARSVLVVATSDQPPLIRTKAAFVATAIAEYFRDQGCNV  249
            LIGERGREV EF++    ++   + VLV ATSD P++ R +AA +AT++AEYFRDQG  V
Sbjct  185  LIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRV  244

Query  250  LLMMDSLTRFAMAQREVGLAIGEPPVSRGYTPSVFATMPRLLERAGTSDKGSITGIYTVL  309
            +L +DS+TR+A A R+V+LA GE P  RGY +SVF  +PRLLER+G++  GSIT++YTVL
Sbjct  245  VLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVL  304

Query  310  VDGDDFNEPVTDNARSILDGHIVLSRELANRNHYPPIDILASVSRVMPDVVTDRHMMLAS  369
            +++++  +P++D+ RSILDGH+ LSR LA + HYP+ID+L SVSRV  +V T  H   AS
Sbjct  305  LESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQAS  364

Query  370  QIKKIMAVYKGAEDLINIGAYVRGSSRdidyaidhiddindFLQQLVGQAFSLPEILSMM  429
             ++K+M+     + +I++G Y  G + D D A++  D ++  L Q V+Q  S+ + LS M
Sbjct  365  AVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

Query  430  ENIIKE  435
            + +  +
Sbjct  425  NAFADQ  430

452) hrcN in NC_004547


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 176/424 (42%), Positives = 291/424 (69%), Gaps = 17/424 (4%)

Query  38   VSGILLECSLPQARIGDLC-----WVARQDDSQMMAEIVGFSPDNTFLSALGALDGIAQG  92
            ++G ++E  L +  IG+LC     W  +Q  ++  A++VG+  + T LS +G  +G++++
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVAR--AQVVGLQRERTVLSLIGNAQGLSRD  73

Query  93   ATVTPLYQPHRIQVSERLLGSVLDGFGRALEDGGESAFVEPGQVTGRTQPVLGDAPPP-T  151
              + P  ++    V+  +LG+VLD  G+ +E      F  P       + V++ APP+ +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVER-----FT-PEVAPISEERVIDVAPPSYA  127

Query  152  SRPRISQPLPTGLRAVDGLLTIGQGQRVGIFAGAGCGKTTLLAELARNTPCDTIVFGLIG  211
            SR  + +PL TG+RA+DGLLT G GQR+GIFA+AGCGKT L+  L  +T  D +V+GLIG
Sbjct  128  SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIG  187

Query  212  ERGRELREFLDHELDDELRSRTVLVCSTSDRSSMeraraaftataiaeayraeGRQVLLI  271
            ERGRE+ EF+D     + + + VLV +TSD +S++R  AA  AT++AE +R +G++V+L+
Sbjct  188  ERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLF  247

Query  272  LDSLTRFARAQREIGLALGEPQGRGGLPPSVYTLLPRLVERAGQTEDGAITALYSVLIEQ  331
            +DS+TR+ARA R+++LA GE  +R G P+SV+  LPRL+ER+G T +G+ITA+Y+VL+E 
Sbjct  248  IDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLES  307

Query  332  DSMNDPVADEVRSLIDGHIVLARRLAEQGHYPAIDVLASLSRTMSNVVDTDHTRNAGGVR  391
            +   DP+ADE+RS++DGH+ L+R+LA QGHYPAIDVL S+SR  ++V    H+ +A++VR
Sbjct  308  EEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVR  367

Query  392  RLMAAYKQVEMLIRLGEYQPGHDELTDSAVNAHSEITQFLRQSMREPMPYGVIQQQLAGV  451
            +LM+   +++++I LGEY+PG++   D A++ +  +   L Q++ +   Y+ +++ L+G+
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ---YSSFDDTLSGM  424

Query  452  SRYA  455
            + +A
Sbjct  425  NAFA  428

453) fliI in NC_008314


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (907),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 160/387 (42%), Positives = 263/387 (68%), Gaps = 10/387 (2%)

Query  99   LMPQSDVVGLLPGARVYPLEPSPQPAGITTPREPGSKRLP--VGAGLLGRVLDAAGRPLD  156
            ++++++VVGL     V +L  ++Q  +      P ++ L+  VG ++LG VLD++G+ ++
Sbjct  45   VVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVE  104

Query  157  ----GLGPITAAMEVPLAGEQINPLMRAPIETVLDTGVRAINGMLTVGRGQRMGLFAGSG  212
                 ++PI+    + +A     +  R  +   L TGVRAI+G+LT G GQRMG+FA++G
Sbjct  105  RFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAG  162

Query  213  VGKSVLLGMMARYTSADVIVVGLIGERGREVKEFIENILGPEGRARSVVVAAPADTSPLL  272
             GK++L+ M+   T ADV+V+GLIGERGREV EF++ + +++ + + V+V A +D +++ 
Sbjct  163  CGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVD  222

Query  273  RMQGAAYATRLAEYFRDQGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  332
            R ++A  AT +AEYFRDQG++V+L++DS+TRYA A R++ALA GE PA +GYP+SVF +L
Sbjct  223  RCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNL  282

Query  333  PTLVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRSLAESGHYPA  392
            P L+ER G  +E  GSITAFYTVL E++++ DP+AD  R+ILDGH+ LSR LA  GHYPA
Sbjct  283  PRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPA  340

Query  393  IDVEASISRAMTALIPDEQFGSVRRFKQLMSRYQRNRDLISVGAYVPGNDPELDLAMRLH  452
            IDV  S+SR    +    +       ++LM+R +  + +I +G Y PG++ + D AM+++
Sbjct  341  IDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMR  400

Query  453  PRMEAFLQQDIHERAGYDDAIAQLHSL  479
              + A L Q + + +++DD+++ ++++
Sbjct  401  DSLKAWLCQPVAQYSSFDDTLSGMNAF  427

454) CDBI1_01350 in NC_017179


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 165/412 (41%), Positives = 273/412 (67%), Gaps = 8/412 (1%)

Query  30   KKIIGLTVEVEGIKAFVGELCVI---YNQVNKPVNCEVVGFKDKEVILMALGELTLIAPG  86
            +KI G  +E E     +GELC I    +Q +     +VVG++    +L  +G+   ++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  87   CKVISKGIPLSVMCSDNLLGKVLDGLGNPID----NSDAVLGDRYNLNNEPPDPMKRKKI  142
              + + G +LS   + ++LG VLD  G+ ++    +  ++  +R  ++  PP    R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER-VIDVAPPSYASRVGV  132

Query  143  RNIMETGVRAIDAFTTCGEGQRIGIFAGSGVGKSTTLGMIARNAKADVNVIALIGERGRE  202
            R+ + TGVRAID++ TCG GQR+GIFA++G GK+  + M+  ++ ADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  203  VLDFIDKDLGEEGMKKSVVVCATSDKAPLVRLKGALTATAIAEYFRDQGKKVILMMDSVT  262
            V +F+D   + +   K V+V ATSD +++ R ++A  AT++AEYFRDQGK+V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  263  RFAMAQREVGIAIGEPPAQKGYTPSVFAILPKLMERTGTSDKGSITAFYTVLVDGDDFNE  322
            R+A A R+V++A GE PA++GY +SVF  LP+L+ER G++  GSITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  323  PIADTTRGILDGHIVLSRDLANKNHYPSIDVLNSLSRLMNEIASKEDIKIASFARDMLAE  382
            P+AD  R+ILDGH+ LSR LA + HYP+IDVL+S+SR+  ++++  +   AS  R +++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  383  YREAEDLINIGAYASGTNKKIDEAIYYHEHIINFLKQGINEKSSFNETISSL  434
              E + +I++G Y +G N   D A+  ++ +   L Q + + SSF++T+S++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

455) fliI in NC_013315


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 165/412 (41%), Positives = 273/412 (67%), Gaps = 8/412 (1%)

Query  30   KKIIGLTVEVEGIKAFVGELCVI---YNQVNKPVNCEVVGFKDKEVILMALGELTLIAPG  86
            +KI G  +E E     +GELC I    +Q +     +VVG++    +L  +G+   ++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  87   CKVISKGIPLSVMCSDNLLGKVLDGLGNPID----NSDAVLGDRYNLNNEPPDPMKRKKI  142
              + + G +LS   + ++LG VLD  G+ ++    +  ++  +R  ++  PP    R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER-VIDVAPPSYASRVGV  132

Query  143  RNIMETGVRAIDAFTTCGEGQRIGIFAGSGVGKSTTLGMIARNAKADVNVIALIGERGRE  202
            R+ + TGVRAID++ TCG GQR+GIFA++G GK+  + M+  ++ ADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  203  VLDFIDKDLGEEGMKKSVVVCATSDKAPLVRLKGALTATAIAEYFRDQGKKVILMMDSVT  262
            V +F+D   + +   K V+V ATSD +++ R ++A  AT++AEYFRDQGK+V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  263  RFAMAQREVGIAIGEPPAQKGYTPSVFAILPKLMERTGTSDKGSITAFYTVLVDGDDFNE  322
            R+A A R+V++A GE PA++GY +SVF  LP+L+ER G++  GSITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  323  PIADTTRGILDGHIVLSRDLANKNHYPSIDVLNSLSRLMNEIASKEDIKIASFARDMLAE  382
            P+AD  R+ILDGH+ LSR LA + HYP+IDVL+S+SR+  ++++  +   AS  R +++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  383  YREAEDLINIGAYASGTNKKIDEAIYYHEHIINFLKQGINEKSSFNETISSL  434
              E + +I++G Y +G N   D A+  ++ +   L Q + + SSF++T+S++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

456) fliI in NC_013316


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 165/412 (41%), Positives = 273/412 (67%), Gaps = 8/412 (1%)

Query  30   KKIIGLTVEVEGIKAFVGELCVI---YNQVNKPVNCEVVGFKDKEVILMALGELTLIAPG  86
            +KI G  +E E     +GELC I    +Q +     +VVG++    +L  +G+   ++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  87   CKVISKGIPLSVMCSDNLLGKVLDGLGNPID----NSDAVLGDRYNLNNEPPDPMKRKKI  142
              + + G +LS   + ++LG VLD  G+ ++    +  ++  +R  ++  PP    R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER-VIDVAPPSYASRVGV  132

Query  143  RNIMETGVRAIDAFTTCGEGQRIGIFAGSGVGKSTTLGMIARNAKADVNVIALIGERGRE  202
            R+ + TGVRAID++ TCG GQR+GIFA++G GK+  + M+  ++ ADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  203  VLDFIDKDLGEEGMKKSVVVCATSDKAPLVRLKGALTATAIAEYFRDQGKKVILMMDSVT  262
            V +F+D   + +   K V+V ATSD +++ R ++A  AT++AEYFRDQGK+V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  263  RFAMAQREVGIAIGEPPAQKGYTPSVFAILPKLMERTGTSDKGSITAFYTVLVDGDDFNE  322
            R+A A R+V++A GE PA++GY +SVF  LP+L+ER G++  GSITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  323  PIADTTRGILDGHIVLSRDLANKNHYPSIDVLNSLSRLMNEIASKEDIKIASFARDMLAE  382
            P+AD  R+ILDGH+ LSR LA + HYP+IDVL+S+SR+  ++++  +   AS  R +++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  383  YREAEDLINIGAYASGTNKKIDEAIYYHEHIINFLKQGINEKSSFNETISSL  434
              E + +I++G Y +G N   D A+  ++ +   L Q + + SSF++T+S++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

457) fliI in NC_014328


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 161/395 (41%), Positives = 263/395 (67%), Gaps = 8/395 (2%)

Query  26   KKVIGLTVEVEGIRAFVGEVCHI---YNEENSKISCEVVGFNESNVILMPLGELIGISPG  82
            +K+ G  +E E     +GE+C+I    ++ +     +VVG++    +L  +G+  G+S +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  83   CRVVPERMPLNVRCSDELFGKVLDGLGNPLDGAYISSGVPYP----LDTEPPDPLKRRRI  138
              + P   +L+ + +  ++G VLD  G+ ++  + +   P +    +D  PP    R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVE-RFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  139  TEVIATGVRAIDGFLTCGQGQRIGIFAGSGVGKSTTLGMIAKYAEADVNVIALIGERGRE  198
             E + TGVRAIDG+LTCG GQR+GIFA++G GK+  + M+   +EADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  199  VKDFIEKDLGEEGMKKSIIVCATSDKPALVRLKGAFTATAIAEYFRDKGKKVILMMDSVT  258
            V +F++   + +   K ++V ATSD P++ R ++A  AT++AEYFRD+GK+V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  259  RFAMAQREIGLAIGEPPATKGYTPSVFAKLPRLMERAGTSDIGSITAFYTVLVDGDDLNE  318
            R+A A R+++LA GE PA +GY +SVF +LPRL+ER+G++  GSITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  319  PIADAVRGILDGHIVLSRTLANKNHYPAIDVLASISRLMSEIAESDHKKNASFARDMLST  378
            P+AD +R+ILDGH+ LSR LA + HYPAIDVL S+SR+ ++++ + H  +AS  R +++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  379  YKNSEDLINIGAYVKGSSEKIDKAVACYDKIIAYL  413
              + + +I++G Y  G +   D+A+   D + A L
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWL  407

458) fliI in NC_009089


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  243 bits (905),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 165/412 (41%), Positives = 273/412 (67%), Gaps = 8/412 (1%)

Query  30   KKIIGLTVEVEGIKAFVGELCVI---YNQVNKPVNCEVVGFKDKEVILMALGELTLIAPG  86
            +KI G  +E E     +GELC I    +Q +     +VVG++    +L  +G+   ++ +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  87   CKVISNGIPLSVMCSDNLLGKVLDGLGNPID----NSDAVLGDRYNLNNEPPDPMKRKKI  142
              + + G +LS   + ++LG VLD  G+ ++    +  ++  +R  ++  PP    R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER-VIDVAPPSYASRVGV  132

Query  143  RNIMETGVRAIDAFTTCGEGQRIGIFAGSGVGKSTTLGMIARNAKADVNVIALIGERGRE  202
            R+ + TGVRAID++ TCG GQR+GIFA++G GK+  + M+  ++ ADV VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  203  VLDFIDKDLGEEGMKKSVVVCATSDKAPLVRLKGALTATAIAEYFRDQGKKVILMMDSVT  262
            V +F+D   + +   K V+V ATSD +++ R ++A  AT++AEYFRDQGK+V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  263  RFAMAQREVGVAIGEPPAQKGYTPSVFAMLPKLMERTGTSDKGSITAFYTVLVDGDDFNE  322
            R+A A R+V++A GE PA++GY +SVF  LP+L+ER G++  GSITAFYTVL+++++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  323  PIADTTRGILDGHIVLSRDLANKNHYPSIDVLNSLSRLMNEIASKEDIKIASFARDMLAE  382
            P+AD  R+ILDGH+ LSR LA + HYP+IDVL+S+SR+  ++++  +   AS  R +++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  383  YREAEDLINIGAYASGTNKKIDEAIYYHEHIINFLKQGINEKSSFNETISSL  434
              E + +I++G Y +G N   D A+  ++ +   L Q + + SSF++T+S++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

459) SN31241_24850 in NC_021902


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  242 bits (904),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  21   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  74
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  75   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  131
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  132  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  191
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  192  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  251
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  252  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  311
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  312  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  371
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  372  QEVELLIRIGEYQRGVDTDTDKAID  396
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

460) ssaN in NC_017046


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  242 bits (904),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  21   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  74
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  75   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  131
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  132  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  191
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  192  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  251
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  252  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  311
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  312  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALY  371
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  372  QEVELLIRIGEYQRGVDTDTDKAID  396
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

461) fliI in NC_015723


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  242 bits (904),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 159/387 (42%), Positives = 264/387 (69%), Gaps = 10/387 (2%)

Query  99   LMPQSDVVGLLPGARVYPLEPSPQPAGITAPREQGSKRLP--VGAGLLGRVLDAAGRPLD  156
            ++++++VVGL     V +L  ++Q  +        ++ L+  VG ++LG VLD++G+ ++
Sbjct  45   VVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVE  104

Query  157  ----GLGPITAAMEVPLAGEQINPLMRAPIETVLDTGVRAINGMLTVGRGQRMGLFAGSG  212
                 ++PI+    + +A     +  R  +   L TGVRAI+G+LT G GQRMG+FA++G
Sbjct  105  RFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAG  162

Query  213  VGKSVLLGMMARYTSADVIVVGLIGERGREVKEFIENILGPEGRARSVVVAAPADTSPLL  272
             GK++L+ M+   T ADV+V+GLIGERGREV EF++ + +++ + + V+V A +D +++ 
Sbjct  163  CGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVD  222

Query  273  RMQGAAYATRLAEYFRDQGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  332
            R ++A  AT +AEYFRDQG++V+L++DS+TRYA A R++ALA GE PA +GYP+SVF +L
Sbjct  223  RCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNL  282

Query  333  PTLVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRSLAESGHYPA  392
            P L+ER G  +E  GSITAFYTVL E++++ DP+AD  R+ILDGH+ LSR LA  GHYPA
Sbjct  283  PRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPA  340

Query  393  IDVEASISRAMTALIPAAQFGSVRRFKQLMSRYQRNRDLISVGAYVPGNDPELDLAMRLH  452
            IDV  S+SR    +  +++       ++LM+R +  + +I +G Y PG++ + D AM+++
Sbjct  341  IDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMR  400

Query  453  PRMEAFLQQDIHERAGYDDAIAQLHSL  479
              + A L Q + + +++DD+++ ++++
Sbjct  401  DSLKAWLCQPVAQYSSFDDTLSGMNAF  427

462) fliI in NC_011653


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  242 bits (903),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 173/419 (42%), Positives = 275/419 (66%), Gaps = 13/419 (3%)

Query  25   KIVGLTIESKGPDAFLGELCKIITDYKKTL----AEVVGFNDNGIILMPLEDISGLKKGC  80
            KI G  IE+   D  +GELC I  +  +      A+VVG++ +  +L  + +  GL ++ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  81   QVLKTGEYVSVPVSEELLGKVIDSLGRPLDGKKIYTKEKVPIVRE------APNPLVRKR  134
             +  TG  +S  V+  +LG V+D+ G+ ++    +T E  PI  E      +P+   R  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVE---RFTPEVAPISEERVIDVAPPSYASRVG  131

Query  135  ITTPISVGVRAIDGFLTLGYGQRIGIFAGSGVGKSTLLGMVARNTSADINVISLIGERGR  194
            +  P+  GVRAIDG+LT G GQR+GIFA++G GK+ L+ M+  +T AD+ VI+LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  195  EVREFIEKDLKKEGLKRSVVVVSTSDQPALLRVKALLTATSIAEYFRDKGYNVLLMVDSL  254
            EV EF++     +   + V+V +TSD P++ R +A   AT++AEYFRD+G  V+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  255  TRWAIAQREVGLATGEPPTTRGYPPSVFAGLPKILERAGNSDKGSITGIYTVLVESDDFN  314
            TR A A R+V+LA+GE P+ RGYP+SVF  LP++LER+G +  GSIT++YTVL+ES++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  315  EPISDTVRGIVDGHIILSRKLAESAHYPAIDILMSVSRLMNDITRKEHKIAALKIKDLLA  374
            +P++D +R+I+DGH+ LSRKLA  +HYPAID+L SVSR+  ++T   H   A  ++ L++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  375  TYYDAKDLIDVGAYKKGTNPKIDKAIELIDEINKFLRQSVDEKMSFEDTVEYLISIANK  433
               + + +ID+G Y+ G N   D+A+++ D ++  L Q+V +  SF+DT+  + ++A++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQ  430

463) Taci_1334 in NC_013522


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  242 bits (903),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 180/410 (44%), Positives = 288/410 (71%), Gaps = 8/410 (1%)

Query  28   QVVGLVIESQGPDVQVGDLCEI--SFRNRRNPLKAEVVGFRSDRVLLMPLGDLNDIGPGC  85
            ++ G +IE++  DV +G+LCEI  + ++++   +A+VVG++ +R +L  +G+ ++++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  86   DVAALGPTLGVHVGEDLLGRILDGLGNPID----DLGPVGASEFYPLYAPPPHPLKRQMI  141
             + + G +L+  VG  +LG +LD  G+ ++    +++P++      + APP+ +  R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV-APPSYA-SRVGV  132

Query  142  DRPLSVGVRVIDGLLTLGQGQRVGIFAGSGVGKSVLLGMMARNTEADVNVIALvgergre  201
              PL  GVR IDGLLT G GQR+GIFA++G GK++L+ M+  +TEADV VI+L+GERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  202  vrefverDLGPEGLKRSVVVVATSDQPPLVRLKASLTATAVAEYFRDQGANVLLMMDSVT  261
            V EFV+   +++   + V+V ATSD P++ R +A+  AT+VAEYFRDQG  V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  262  RVAMAQRDVGLAIGEPPATKGYTPSVFAFLPRLLERSGAGDRGSITAIYTVLVEGDDMNE  321
            R A A RDV+LA GE PA +GY +SVF  LPRLLER+GA   GSITA+YTVL+E+++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  322  PVADTVRGILDGHIVLSRSLAAKNHYPSVEVGRSVSRVMPHIVSREHLESAGRVRELLAV  381
            P+AD +R+ILDGH+ LSR LA++ HYP+++V +SVSRV  ++ +  H E A+ VR L++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  382  YEEAQDLVNIGAYKAGSNPRIDWALANLEDVRNFLRQGMHERSSFDETVS  431
             EE Q ++++G Y++G N   D+A+   + ++  L Q + + SSFD+T+S
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

464) Geob_0497 in NC_011979


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  242 bits (902),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 167/406 (42%), Positives = 277/406 (69%), Gaps = 7/406 (1%)

Query  41   ETAVGTLCEI--NSQGSESIP-AEVVGFRENKTLLMPLGELRGVGLGS-LISVRREKASL  96
            + A+G LCEI    +  + ++ A+VVG++ ++T+L  +G+ +G++ +  L +  R  ++ 
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  97   GVGPALLGRVIDGLGAPIDDRGPIIT--GEEYPIYATPVNPMKRRPIRQPLDLGIRAING  154
             VG ++LG V+D  G  ++   P ++  +EE  I  +P +   R  +R+PL  G+RAI+G
Sbjct  87   -VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  155  LLTCGEGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGRELREFIEKDLQAEG  214
            LLTCG GQR+GI A++G GK+ L+ M+   TEADV VI+LIGERGRE+ EF++    ++ 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  215  LKKSVVVVATSDQPPLVRMRGAYIATTIAEYFQAQGKKVLLMMDSATRFAMAMREVGLAI  274
              K V+V ATSD P++ R  +A +ATT+AEYF+ QGK+V+L +DS TR+A A+R+V+LA 
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  275  GEPPTTKGYTPSVFAALPKLLERTGNFQNGSITGLYTVLVEGDDFNEPISDAMRSILDGH  334
            GE P+ +GY +SVF  LP+LLER G   +GSIT++YTVL+E+++  +P++D +RSILDGH
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  335  IVLSRELAARNIYPPIDVLNSASRVMMDVTAKNHQKLAGNFKGVLATYRQAEDLINIGAY  394
            + LSR LA++  YP+IDVL+S SRV  +VT+  H   A+  + +++   + + +I++G Y
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  395  KPGSNPGIDYALAKIEHMNAYLKQDIKDGVGVENAVMELEAIFDDT  440
            +PG N + D A+   + ++A L Q + +  + ++++  ++A+ D+ 
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

465) fliI in NC_011146


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  242 bits (902),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 165/412 (41%), Positives = 278/412 (68%), Gaps = 7/412 (1%)

Query  25   QVVGLVIEGYCPETAVGSVCEVH---SEGHAPIPAEVVGFRENKTLLMPLGELRGVGLGS  81
            ++ G +IE+   + A+G +CE++    + +    A+VVG++ ++T+L  +G+ +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  82   VI-SVRREKAALGVGPALLGRVIDGLGQPIDDKGP--IEVADEYPIYALPVNPMKRRPIR  138
            V+ +  R  +A  VG ++LG V+D  G+ ++   P    +++E  I   P +   R  +R
Sbjct  75   VLYPTGRALSAW-VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  139  KPLNLGIRAINGLLTCGEGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGREL  198
             PL  G+RAI+GLLTCG GQR+GI A++G GK+ L+ M+   TEADV VI+LIGERGRE+
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  199  REFIEKDLQKEGLRKSVVVVATSDQPPLVRMRGAYIATTIAEYFQAQGKKVLLMMDSATR  258
             EF++     +   K V+V ATSD P++ R  +A +ATT+AEYF+ QGK+V+L +DS TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  259  FAMAMREVGLAIGEPPTTKGYTPSVFAALPRLLERTGNFQGGSITGLYTVLVEGDDFNEP  318
            +A A+R+V+LA GE P+ +GY +SVF  LPRLLER G    GSIT++YTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  319  ISDAMRSILDGHIILTRELAARNIYPPIDLMNSASRVMSDVATKEHKALAGRFKELLATY  378
            ++D +RSILDGH+ L+R LA++  YP+ID+++S SRV ++V+T  H   A+  + L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  379  RQAEDMINIGAYKSGSNPKIDYAVAKMEQMIGYLKQDVGDEVNFEESIAALE  430
             + +  I++G Y++G N   D A+   + + + L Q V++  +F++++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

466) Nit79A3_0497 in NC_015731


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  242 bits (902),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 154/352 (44%), Positives = 242/352 (69%), Gaps = 8/352 (2%)

Query  112  AADRAKHVYVGPELLGRVLNGVGEPLDR----LGPTHAEQSVPLYSRPYNPLERIPVSEP  167
            +++RA    VG  +LG VL+  G  ++R    ++P   E+ + + + +Y +  R+ V EP
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREP  135

Query  168  LDVGVRAINMLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTTADVIVVGLIGERGREVKE  227
            L  GVRAI+ LLT G GQRMG+FA++G GK++L+ M+   T ADV+V+GLIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  228  FIENILGQEGLARSVVVAAPADTSPLLRLQGAAYATAIAEYFRDTGKHVLLIMDSLTRYA  287
            F++ + + +   + V+V A +D +++ R ++A  AT++AEYFRD GK+V+L++DS+TRYA
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  288  MAQREISLAIGEPPATKGYPPSVFAKLPQLVERAGNGNQNSGSITAFYTVLTEGDDQNDP  347
             A R+++LA GE PA +GYP+SVF +LP+L+ER+G  ++  GSITAFYTVL E++++ DP
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADP  313

Query  348  IADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRVMTSVVPQKQVDMARKFKSLCSRY  407
            +AD  R+ILDGH+ LSR+LA  GHYPAID+  S+SRV   V    + + A   + L +R 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  408  QRSHDLISVGAYVAGTDPELDRAIRLYPAFEKFLQQTMSQHENFTDSLEKLT  459
            +  + +I +G Y +G + + DRA+++  ++   L Q ++Q  +F D+L  + 
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

467) Acav_0530 in NC_015138


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  241 bits (901),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 180/405 (45%), Positives = 288/405 (72%), Gaps = 8/405 (1%)

Query  44   DAKLGELCHVLDER--GELLQAAEVVGFANGQSILSPFGSILGVRGGSPVVGLGEVLSVP  101
            D  +GELC++   +   +++  A+VVG+   +++LS +G+  G+  +  +   G  LS  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  102  VGPRLLGRVIDSLGQPID----GKGPLDCSETRPVFALPPTPMEREMIEHPLPTGVKAID  157
            VG  +LG V+D+ G+ ++      +P+  SE R +   PP+   R  + +PL TGV+AID
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPI--SEERVIDVAPPSYASRVGVREPLITGVRAID  144

Query  158  GLITLGEGQRMGIFAPAGVGKSTLMGMLARGTQCDVSVIALigergrevrefvefiLGEE  217
            GL+T G GQRMGIFA+AG GK+ LM ML   T+ DV VI+LIGERGREV EFV+ + + +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  218  GMARSVVVCATSDRSSSERakaahvatavaEYYRDQGLKVLLMMDSLTRFARAQREIGLA  277
               + V+V ATSD +S +R +AA++AT+VAEY+RDQG +V+L +DS+TR+ARA R+++LA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  278  AGEPPARRGFPPSVFAEIPRLLERAGMGARGSITALYTVLYEDESGNDPISEEVRGILDG  337
            +GE PARRG+P+SVF ++PRLLER+G  + GSITA+YTVL E E   DP+++E+R+ILDG
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  338  HMILSRKIAARNQYPAIDVLGSLSRVMSQIVPREHQQAGGRFRQLMAKYEEIEPLVQMGE  397
            H+ LSRK+A++ +YPAIDVL S+SRV +Q+    H + ++  R+LM++ EE++ ++++GE
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  398  YKPGNDPLADEAMEKHEEIRAFLNQSTSDLWDFGRSVDTLSDISG  442
            Y+PG++   D AM+ ++ ++A L Q+ ++   F+ ++  ++ +++
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

468) GM21_3919 in NC_012918


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  241 bits (901),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 165/412 (41%), Positives = 278/412 (68%), Gaps = 7/412 (1%)

Query  25   QVVGLVIEGYCPETAVGSVCEVH---SEGHAPIPAEVVGFRENKTLLMPLGELRGVGLGS  81
            ++ G +IE+   + A+G +CE++    + +    A+VVG++ ++T+L  +G+ +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  82   VI-SVRREKAALGVGPALLGRVIDGLGQPIDDKGP--IEVADEYPIYALPVNPMKRRPIR  138
            V+ +  R  +A  VG ++LG V+D  G+ ++   P    +++E  I   P +   R  +R
Sbjct  75   VLYPTGRALSAW-VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  139  KPLNLGIRAINGLLTCGEGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGREL  198
             PL  G+RAI+GLLTCG GQR+GI A++G GK+ L+ M+   TEADV VI+LIGERGRE+
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  199  REFIEKDLQKEGLRKSVVVVATSDQPPLVRMRGAYIATTIAEYFQAQGKKVLLMMDSATR  258
             EF++     +   K V+V ATSD P++ R  +A +ATT+AEYF+ QGK+V+L +DS TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  259  FAMAMREVGLAIGEPPTTKGYTPSVFAALPRLLERTGNFQGGSITGLYTVLVEGDDFNEP  318
            +A A+R+V+LA GE P+ +GY +SVF  LPRLLER G    GSIT++YTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  319  ISDAMRSILDGHIILTRELAARNIYPPIDLMNSASRVMSDVATKEHRALAGRFKELLATY  378
            ++D +RSILDGH+ L+R LA++  YP+ID+++S SRV ++V+T  H   A+  + L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  379  RQAEDMINIGAYKSGSNPKIDYAVAKMEQMIGYLKQDVGDEVNFEESIAALE  430
             + +  I++G Y++G N   D A+   + + + L Q V++  +F++++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

469) Marpi_1086 in NC_016751


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  241 bits (901),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 171/419 (41%), Positives = 275/419 (66%), Gaps = 10/419 (2%)

Query  28   DRITGVVIESRGPDVSLGDLCSIT---LKDGSTALCEVVGFVGNKVLLMPFEDVHGLYVG  84
            ++ITG +IE+   DV++G+LC I     +    A  +VVG+  ++ +L  + + +GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  85   ARVKKLNRKVSIGVSNNLLGRVLDGLGRPMD-----GKPLYAEKYRSIYSPPPNPLIRNK  139
              +    R +S  V+ ++LG VLD  G+ ++       P+  E  R I  +PP+   R  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE--RVIDVAPPSYASRVG  131

Query  140  IEEPLPVGIRAIDGLITLGKGQRIGIFAGSGVGKSTLLGMIARNTSADINVISLIGERGR  199
            + EPL  G+RAIDGL+T G GQR+GIFA++G GK+ L+ M+  +T AD+ VI+LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  200  EVREFIERDLGEEGLKRSVVVVSTSDQPALMRTKALLSATTIAEYFRDQGYNVMLMVDSL  259
            EV EF++   + +   + V+V +TSD P++ R +A   ATT+AEYFRDQG  V+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  260  TRWAMAQREIGLSIGEPPATRGYTPSVFAELPKILERAGNSDKGSITAIYTVLVEGDDFN  319
            TR A A R+++L+ GE PA RGY +SVF +LP++LER+G +  GSITA+YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  320  EPISDTVRGIVDGHILLSRRLAESSHYPAIDVLASISRLMSTVAKEEHLEAAYRVRDIMA  379
            +P++D +R+I+DGH+ LSR+LA  +HYPAIDVL S+SR+ + V+   H E A  VR +M+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  380  TYNDAKDLIEVGAYKEGTNPKIDIAKREIDNINQFLRQRTNENPDFNQIVNQLIDLAKK  438
              ++ + +I++G Y+ G N   D A +  D+++  L Q   + + F++ ++ +  +A +
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQ  430

470) Q7C_2350 in NC_017856


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  241 bits (900),  Expect = 7e-65, Method: Compositional matrix adjust.
 Identities = 168/390 (44%), Positives = 265/390 (68%), Gaps = 9/390 (2%)

Query  51   QAPIGSRCEIQARG----QPPVEAEVVGFHDDVLYLMPTGDIRGLVPNAKVRPIQNDSLI  106
            + +IG  CEI+ RG    Q    A+VVG++ +   L   G+ +GL  +  + P       
Sbjct  27   DVAIGELCEIR-RGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSA  85

Query  107  PVGEALLGRVVDGAGKPLD--GKGAIKVKDRVPLHGQPVNPLSRAPVRQHLDVGVRAINA  164
             VG ++LG V+D +GK ++        + +   ++  P +  SR  VR+ L  GVRAI++
Sbjct  86   WVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  165  LLSVGRGQRMGLFAGSGVGKSVLLGMMTRFTEADVIVVGLIGERGREVKEFIEDILGEQG  224
            LL+ G GQRMG+FA++G GK++L+ M+   TEADV+V+GLIGERGREV EF++ + + + 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  225  LKRAVVVASPADHSPLMRLHGAMLATSIAEYFRDQGKQVLLLMDSLTRYAQAQREIALAI  284
              + V+V + +D +++ R ++A LAT++AEYFRDQGK+V+L++DS+TRYA+A R++ALA 
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  285  GEPPATKGYPPSVFSLLPQLVERAGNAGEGQGGITAIYTVLVEGDDQQDPVADSARAILD  344
            GE PA +GYP+SVF  LP+L+ER+G ++E  G+ITA+YTVL+E++++ DP+AD  R+ILD
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILD  323

Query  345  GHIVLSRQLAESGVYPAIDVEASISRVMPQVTSREQLQQAQLFKQIYATYRQNQDLINIG  404
            GH+ LSR+LA  G YPAIDV  S+SRV  QVT+  + +QA   +++ +   + Q +I++G
Sbjct  324  GHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLG  383

Query  405  AYSAGSDPQIDHAIEMYPKLRKLLKQDMHQ  434
             Y +G + + D+A++M   L+  L Q + Q
Sbjct  384  EYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

471) CCALI_01244 in NC_021487


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  241 bits (899),  Expect = 7e-65, Method: Compositional matrix adjust.
 Identities = 173/412 (42%), Positives = 282/412 (69%), Gaps = 8/412 (1%)

Query  39   QVIGLVIESNGPPAMVGELCDIYYDRANLYDPARPPIKAEVVGFRQGRVLLMPIGPMEGI  98
            ++ G +IE++     +GELC+I   R+   +  +   +A+VVG+++ R +L  IG  +G+
Sbjct  15   KITGPIIEAELRDVAIGELCEI--RRG--WHQKQVVARAQVVGLQRERTVLSLIGNAQGL  70

Query  99   RPGSEVVATRHPLQVMVgegllgrmldglgRPIDGGAPLDLPSIVP---VNANPPNPLTR  155
              +  + +T ++L   VG ++LG +LD  G+ ++  +P ++++I     ++  PP+  +R
Sbjct  71   SRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP-EVAPISEERVIDVAPPSYASR  129

Query  156  PRIRDIMQVGVRAIDGCLTLGRGQRVGVFAGSGVGKSTLLGMIARNTNADVNVIALVGER  215
              +R+ +  GVRAIDG LT G GQR+G+FA++G GK+ L+ M+  +T+ADV VI+L+GER
Sbjct  130  VGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGER  189

Query  216  GREVRDFIEESLGTEGLQRSVVVVATSDQPALVRIKAAFVATAIAEYFRDQGAHVLLMMD  275
            GREV +F++   +++  ++ V+V ATSD P++ R +AA +AT++AEYFRDQG +V+L +D
Sbjct  190  GREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFID  249

Query  276  SITRLAMAQREIGLAIGEPPATRGYTPSVFAMLPRLLERAGTAENGSITGLYTVLVEGDD  335
            S+TR A A R+++LA GE PA RGY +SVF  LPRLLER+G++ +GSIT++YTVL+E+++
Sbjct  250  SMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEE  309

Query  336  MNEPVADAVRGILDGHIVLTRELAQRGHYPAIDVLQSVSRVMPQIVSPEHLRAAERLRDT  395
              +P+AD +R+ILDGH+ L+R LA +GHYPAIDVL+SVSRV  Q+ +P H   A  +R  
Sbjct  310  EADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKL  369

Query  396  IATYRNAEDLINIGAYVDGSNPKIDRARARIEQANAFLQQRFDETSTLSETL  447
            ++   + + +I++G Y  G N   DRA    +  +A L Q   + S++ +TL
Sbjct  370  MTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

472) Aave_0463 in NC_008752


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  241 bits (898),  Expect = 8e-65, Method: Compositional matrix adjust.
 Identities = 180/405 (45%), Positives = 286/405 (71%), Gaps = 8/405 (1%)

Query  44   DAKLGELCHVLDER--GELLQAAEVVGFANGQSILSPFGSILGVRGGSPVVGLGEVLSVP  101
            D  +GELC++   +   +++  A+VVG+   +++LS +G+  G+  +  +   G  LS  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  102  VGPRLLGRVIDSLGQPID----GKGPLDCSETRPVFALPPTPMEREMIEHPLPTGVKAID  157
            VG  +LG V+D+ G+ ++      +P+  SE R +   PP+   R  + +PL TGV+AID
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPI--SEERVIDVAPPSYASRVGVREPLITGVRAID  144

Query  158  GLITLGEGQRMGIFAPAGVGKSTLMGMLARGTQCDVSVIALigergrevrefvefiLGEE  217
            GL+T G GQRMGIFA+AG GK+ LM ML   T+ DV VI+LIGERGREV EFV+ + + +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  218  GMARSVVVCATSDRSSSERakaahvatavaEYYRDQGLKVLLMMDSLTRFARAQREIGLA  277
               + V+V ATSD +S +R +AA++AT+VAEY+RDQG +V+L +DS+TR+ARA R+++LA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  278  AGEPPARRGFPPSVFAEIPRLLERAGMGARGSITALYTVLYEDESGNDPISEEVRGILDG  337
            +GE PARRG+P+SVF ++PRLLER+G  + GSITA+YTVL E E   DP+++E+R+ILDG
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  338  HMILSRKIAARNQYPAIDVLGSLSRVMSQIVPREHQQAGGRFRQLMAKYEEIEPLVQMGE  397
            H+ LSRK+A++ +YPAIDVL S+SRV +Q+    H + ++  R+LM++ EE++ ++++GE
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  398  YRPGNDPLADEAMEKHAAIRDFLNQSTSDLWDFGRSVDTLADISG  442
            YRPG++   D AM+ + +++  L Q+ ++   F+ ++  +  +++
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

473) Clole_2457 in NC_015275


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  241 bits (898),  Expect = 8e-65, Method: Compositional matrix adjust.
 Identities = 167/413 (41%), Positives = 277/413 (68%), Gaps = 5/413 (1%)

Query  24   RVVGMSIETLGPIANIGDICYIQP-RGKKELVT-AEVVGFKDEYLLLMPLGNLEGIGPGC  81
            ++ G  IE+      IG++C I+  + +K++V+ A+VVG++ E  +L  +GN +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  82   EVLAYGDKLSVKVDESLLGKVVDWRAKPIN---GDELHCRYQVPIDNTAPNPLTRNRITI  138
             + + G  LS  V+ S+LG V+D  +K ++    +      +  ID ++P+  +R  +  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  139  PLQLGVRAIDGMLTVGKGQRIGIFAGSGVGKSTLMGMIARNALSDINIIALIGERGREVR  198
            PL  GVRAIDG+LT G GQR+GIFA++G GK+ LM M+  ++ +D+ +I+LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  199  EFIENDLQAEGLKRSIVVVATSDQPALMRLKAAMTATALAEHFRAQGKDVLLMMDSLTRF  258
            EF++    ++   + ++V ATSD P++ R +AA  AT++AE FR QGK V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  259  SMAQREIGLAIGEPPVSRGYTPSVFAQMPKLLERAGNSDKGSITGMYTVLVDGDDFNEPI  318
            + A R+++LA GE P  RGY +SVF ++P+LLER+G +  GSIT+ YTVL+++++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  319  TDTARGILDGHIVLSRKLANKGHYPAIDVLASISRVMSNIVSDQHKTYAREIKKHMAVYK  378
            +D  R+ILDGH+ LSRKLA +GHYPAIDVL S+SRV +++ +  H   A  ++K M+   
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  379  EAEDLINVGAYNKGSSEEIDAAIDKMKFINEFLCQSVGEKVEFENTLHHMQEI  431
            E + +I++G Y  G + + D A++    ++  LCQ+V++   F++TL  M+ +
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

474) Reut_B5100 in NC_007348


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  241 bits (899),  Expect = 8e-65, Method: Compositional matrix adjust.
 Identities = 158/387 (41%), Positives = 265/387 (69%), Gaps = 10/387 (2%)

Query  101  LMPQSDVVGLLPGARVYPLEPSPQPEGASSPREPGSKRLP--VGEGMLGRVVDAAGRPLD  158
            ++++++VVGL     V +L  ++Q  +      P ++ L+  VG ++LG V+D++G+ ++
Sbjct  45   VVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVE  104

Query  159  ----GLGPIRAAQEVPLSAEQINPLMRAPIQTVLDTGVRAINGMLTVGRGQRMGLFAGSG  214
                 ++PI   + + +++    +  R  ++  L TGVRAI+G+LT G GQRMG+FA++G
Sbjct  105  RFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAG  162

Query  215  VGKSVLLGMMARYTSADVIVVGLIGERGREVKEFIEHILGPEGRARSVVVAAPADCSPLL  274
             GK++L+ M+   T ADV+V+GLIGERGREV EF++ + +++ + + V+V A +D +++ 
Sbjct  163  CGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVD  222

Query  275  RMQGAAYSTRLAEYFRDQGKHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  334
            R ++A  +T +AEYFRDQGK+V+L++DS+TRYA A R++ALA GE PA +GYP+SVF +L
Sbjct  223  RCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNL  282

Query  335  PTLVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVVLSRSLAEAGHYPA  394
            P L+ER G  +E  GSITAFYTVL E++++ DP+AD  R+ILDGH+ LSR LA  GHYPA
Sbjct  283  PRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPA  340

Query  395  IDVEASISRAMTALIPPEQFSSVRRFKQLMSRYQRNRDLISVGAYVPGNDPELDLAIRLH  454
            IDV  S+SR    +  P +       ++LM+R +  + +I +G Y PG++ + D A++++
Sbjct  341  IDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMR  400

Query  455  PRMEAFLQQDIHERAEYDDAVGQLHSL  481
              + A L Q + + + +DD+++ ++++
Sbjct  401  DSLKAWLCQPVAQYSSFDDTLSGMNAF  427

475) Thimo_0273 in NC_019940


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  240 bits (897),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 168/380 (45%), Positives = 266/380 (70%), Gaps = 9/380 (2%)

Query  71   AEVVGFAGERLYLMLAGEDRGLTVNARVTPARHGGGVPVGPEMLGRVLDGAGRPWDGRGP  130
            A+VVG+  ER  L L G+ +GL+ +  + P+ ++ +  VG  +LG VLD +G+       
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKI---VER  105

Query  131  LRAQSRAPLHGRTINPM-----ARAPIDEPLDVGVRAINALLTVGRGQRMGLFAGSGVGK  185
            + ++  +  + R I+       +R  + EPL  GVRAI++LLT G GQRMG+FA++G GK
Sbjct  106  FTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGK  165

Query  186  SALLGMMTRNTNADVTVVGLIGERGREVREFVQNTLGDEGrrravvvavpadrppLMRLH  245
            + L+ M+  +T+ADV V+GLIGERGREV EFV+   + + + + V+V   +D P++ R +
Sbjct  166  TMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCN  225

Query  246  GAMLATSIAEYFRDQGQRVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPHL  305
            +A LAT++AEYFRDQG+RV+L++DS+TRYA+A R++ALA GE PA +GYP+SVF +LP+L
Sbjct  226  AAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRL  285

Query  306  AERAGAGDGKGSITAFYTVLVEGDDQLDPIADSARAILDGHVVLSRALADAGHYPAIDIE  365
             ER+GA  + GSITAFYTVL+E++++ DP+AD  R+ILDGH+ LSR LA+ GHYPAID+ 
Sbjct  286  LERPGAT-SEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVL  344

Query  366  ASVSRLMHEIAAAPHQEAARGLKRLVSLYNRNQDLITLGAYRRGQNAELDEAVERRPAIS  425
             SVSR+  +++++ H E A ++++L++  +  Q +I LG YR G+N + D A++ R ++ 
Sbjct  345  KSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLK  404

Query  426  AFLRQGMRERVDLQSSIAQL  445
            A L Q + +   ++ +++ +
Sbjct  405  AWLCQPVAQYSSFDDTLSGM  424

476) L083_7699 in NC_021191


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  240 bits (897),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 149/344 (44%), Positives = 238/344 (70%), Gaps = 5/344 (1%)

Query  85   STGGPLRVAVGQDLRGRILDGLGRPMD----GGPPLRGEMVGIEAAPPSAMERQLVDAPM  140
            +TG +L   VG  + G +LD  G+ ++      +P+  E V I+ APPS   R  V  P+
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVREPL  136

Query  141  PLGVRVLDTLVPCGRGQRIGIFAGSGVGKSTLMSMITRGTTAELNVVALVGERGREVREF  200
              GVR +D L+ CG GQR+GIFA++G GK+ LM M+   T A++ V++L+GERGREV EF
Sbjct  137  ITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEF  196

Query  201  IEHDLGPEGLARSVVVIATSDTPPLVRLRAPLVATRIAEYFRDEGGDVLMLMDSVTRAAM  260
            ++   +++   + V+V+ATSD P++ R  A+ +AT +AEYFRD+G  V++++DS+TR A 
Sbjct  197  VDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYAR  256

Query  261  AQREVGLSVGEPPATRGYPPSVFAMLASLLERAGPGARGSITGLYTVLVEGDDHNEPIAD  320
            A R+V+L+ GE PA RGYP+SVF  L+ LLER+G+ + GSIT++YTVL+E++++ +P+AD
Sbjct  257  ALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMAD  316

Query  321  AARSILDGHIVLDRKLATAGHFPSIQALDSISRVANKITTPEQKSDATELRRMMAAHRDV  380
              RSILDGH+ L RKLA  GH+P+I+ L S+SRV  ++TTP +  +A+ +R++M+   ++
Sbjct  317  EIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEEL  376

Query  381  RELVEIGAYVPGTNPDADRATAIWPQITAFLRQGLDEKVTAEQA  424
            + ++++G Y PG N D DRA  ++  + A L Q + +  + +++
Sbjct  377  QLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

477) Desaci_3824 in NC_018068


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  240 bits (897),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 173/415 (42%), Positives = 279/415 (68%), Gaps = 10/415 (2%)

Query  25   KIVGLMIESAGPRVSVGEYCHIL-TRAGNEL--PAEVVGFRDSTALLMPLGELEGIAPGD  81
            KI G +IE+    V++GE C+I   +  +++   A+VVG++   ++L  +G+ +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  82   RVIPQRQKLTVSVGSGLLGRILNGLGHPID-----GRPLKTENSYPLQNKPPNALLRPRI  136
             + P  + L+  VG ++LG +L+  G  ++       P+  E    ++  PP+   R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV--IDVAPPSYASRVGV  132

Query  137  TDVLSVGVRTIDGLLTLGRGQRMGIFAGSGVGKSTLLGMMARNTVADVNVIALVGERGRE  196
             + L  GVR+IDGLLT G GQRMGIFA++G GK+ L+ M+  +T ADV VI+L+GERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  197  LRDFIEKDLGPAGLARSVIVVATSDQPALVRLKaaftatavaeffRDQGKDVLLMMDSVT  256
            + +F++   ++    + V+V ATSD P++ R +AA  AT+VAE+FRDQGK V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  257  RFAMAQREVGLTVGEPPATRGYPPSVFALLPKLLERSGMAEKGSITGIYTVLVDGDDHNE  316
            R+A A R+V+L+ GE PA RGYP+SVF  LP+LLER+G +  GSIT++YTVL++++++ +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  317  PIADTVRGILDGHIVLTRDLAMQNHYPAIDILQSVSRVMNDVVSPVHKDLASKFREHLAV  376
            P+AD +R+ILDGH+ L+R LA Q HYPAID+L+SVSRV  +V +P H + AS  R  ++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  377  YRDAKDLIDIGAYTSGSNPRIDSAIAYIERIQEFTRQGVSESSGFEETLQQLNGI  431
              + + +ID+G Y +G N   D A+   + ++    Q V++ S+F++TL  +N++
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

478) fliI in NC_006368


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  240 bits (895),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 164/393 (42%), Positives = 260/393 (67%), Gaps = 7/393 (1%)

Query  45   PVGARCLVKINDEHS---VQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVG  101
            ++G  C ++   ++     +A+VVG+  E   L  IG+ QG++ ++ + PTGR     VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  102  HQLLGRILNGSGMFIDDGPPSEMVETYPLIGQVINP--LKRAPIEVPLDVGIRAINGLLT  159
              +LG +L+ +G +++   P     +   + +V  P    R  +  PL  G+RAI+GLLT
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  160  VGRGQRIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLQGLKR  219
             G GQR+G+FA++G GK++L+ M+   TEADV V+GLIGERGREV EF++   + +   +
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  220  AVVVAAPADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEA  279
             V+V A +D +++ R ++A++AT++AEYFRDQGK+V+L+IDS+TR+A+A R++AL+ GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  280  PATKGYPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHV  339
            PA +GYP+SVF +LP+L+ER+  G+++ GSITAFYTVL E+++  DP+AD  R+ILDGH+
Sbjct  269  PARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  340  VLSRALAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYA  399
             LSR LA QG+YPAID+  S+SRV   V +  H  +    +K ++  E  + +I LG Y 
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  400  KGSDPLVDKAILAVNKLKDYLAQGMDEQVGYDE  432
             G +   D+A+   + LK  L Q + +  ++D+
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

479) RO1_09360 in NC_021012


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  240 bits (896),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 166/408 (41%), Positives = 282/408 (70%), Gaps = 4/408 (0%)

Query  24   KIVGLTIESVGPNAKLNDLCRIIIDREQN-ISTMAEVVGFRDKHLLLMPFESVEGIGVGC  82
            KI G  IE+   +  + +LC I  +++Q+ + + A+VVG++  + +L  + + +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  83   IVENTGHPLTVKVGEELLGHTLDGIGRPTD---VEELLLPYDYPVEALPPDPMARKIIDE  139
            ++  TG++L+  VG  +LG  LD  G+  +    E   ++ +  ++  PP   +R  + E
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  140  VLPLGVKAVDGLITVGKGQRIGIFAGSGVGKSTLLGMFARNTKADINVIALIgergrevr  199
             L  GV+A+DGL+T G GQR+GIFA++G GK+ L+ M+  +T AD+ VI+LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  200  efverDLGEEGMKRSVVIVATSDKPALIRNKAAKTATAIAEYFRDQGKDVLLMMDSLTRF  259
            EFV+   + +   + V++ ATSD P++ R +AA+ AT++AEYFRDQGK V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  260  SMAQREIGLASGEPPVTRGYPPSVYSEMPKLLERAGTSDKGSITGLYTVLVDGDDMNEPI  319
            + A R+++LASGE P  RGYP+SV+ ++P+LLER+G++  GSIT++YTVL+++++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  320  TDTARSILDGHIMLSRKLGQKNHYPAIDVLQSISRVMSSIATSEHKELAGKLRNVMATYN  379
            +D  RSILDGH+ LSRKL+ + HYPAIDVL+S+SRV + ++T+ H E A+ +R++M+  +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  380  EAEDLINIGAYKNGTNREIDYAIQKIQAVNEFLMQKTDEKFEFNEEID  427
            E + +I++G Y+ G N + D A+Q  ++++  L Q   +   F++ + 
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

480) Dd586_1886 in NC_013592


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  240 bits (894),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 181/417 (44%), Positives = 286/417 (69%), Gaps = 14/417 (3%)

Query  46   ESSLPNARIGDLCLIER---HDHSPVLAEIVGFSPKNTFLSALGALDGIAQGAVVTPLYQ  102
            E+ L +  IG+LC I R   + +    A++VG+    T LS +G  +G++++ V+ P  +
Sbjct  22   EAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGR  81

Query  103  PHCVQVSEALFGSVLDGFGRPLEHGSHSAFVEPGSLSASPPMPVIGDAPPP-TERPRIAS  161
            +    V+ +++G+VLD  G+ +E+     F     +++ +   VI+ APP+ + R  +  
Sbjct  82   ALSAWVGYSVLGAVLDPTGKIVER-----F--TPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  162  PLPTGLRAIDGLLTIGCGQRVGIFAGAGCGKTTLLAELARNTPCDAIVFGLIGERGRELR  221
            PL TG+RAIDGLLT G GQR+GIFA+AGCGKT L+  L  +T  D +V+GLIGERGRE+ 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  222  EFLDHELDAQLRSRTVLVCSTSDRSSMeraraaftataiaeafratGKQVLLIIDSLTRF  281
            EF+D    ++ + + VLV +TSD +S++R  AA  AT++AE FR  GK+V+L+IDS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  282  ARAQREIGLALGEPQGRGGLPPSVYTLLPRLVERAGQTRQGAITALYSVLIEQDSMNDPV  341
            ARA R+++LA GE  +R G P+SV+  LPRL+ER+G T +G+ITA+Y+VL+E +   DP+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  342  ADEVRSLIDGHIVLSRRLAERNHYPAIDVLMSLSRTMSNVVDTEHTRNANAVRRLMAAYK  401
            ADE+RS++DGH+ LSR+LA + HYPAIDVL S+SR  ++V    H+ +A+AVR+LM+   
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  402  QVEMLIRLGEYQPGHDALTDAAVNANDDINRFLQQAMREPQSFDDIQMQLAEVSQYA  458
            +++++I LGEY+PG++   D A++  D ++  L Q++ +  SFDD    L+ ++ +A
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT---LSGMNAFA  428

481) yscN in NC_018000


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (893),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 181/418 (44%), Positives = 293/418 (71%), Gaps = 6/418 (1%)

Query  33   RRITGIIVHATAPMVRIGELCHLRD--PVSGATVPAEVVGFEDEEAVLTPIGDLDGMSTR  90
            ++ITG I++A    V IGELC++R           A+VVG++ E +VL+ IG+ +G+S  
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  91   AEVIATGKTLQIPVCDDLLGRVLNPLGEFLD-FSGDRTLPLVTDTYYPTHRPPPPALHRD  149
              + +TG++L   V   +LG VL+P G +++ F+ + + P+  +     + +PP+   R 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVA-PISEER--VIDVAPPSYASRV  130

Query  150  LITEPLQLGIRAIDGLLTVARGQRVGIFGEPGVGKSSLLSAIVRGTKADviiigligerg  209
             + EPL  G+RAIDGLLT + GQR+GIF+ +G GK+ L+  ++  T ADV++IGLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  210  revreFIEGQLGEEGrrrsvvvvATSDRPAIERVKaayaataiaEYFRDQRRDVLLLMDS  269
            REV EF++   + + + + V+V ATSD P+++R +AA  AT++AEYFRDQ + V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  270  VTRFARAQREIGLAAGEPPTRRGYPPSLFAALPRLLERAGPGQGGSITALYTVLTEGDGT  329
            +TR+ARA R+++LA+GE P+RRGYP+S+F  LPRLLER+G+   GSITA+YTVL E++  
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  330  LDPVAEETKAILDGHIMLSSDLAERNFFPAIDILKSRSRLMETIASRTHRDDAARIRTLL  389
             DP+A+E ++ILDGH+ LS  LA +  +PAID+LKS SR+   +++ TH ++A+ +R L+
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  390  ARFEEIELLLRVGEYERGADALSDEAIDKRDAIDAFLRQESDAFSPLEATVEQLKRLA  447
            +R+EE++L++ +GEY  G +  +D A++ RD++ A L Q    +S+++ T+  ++ +A
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFA  428

482) Tgr7_1966 in NC_011901


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (893),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 158/377 (42%), Positives = 260/377 (69%), Gaps = 6/377 (1%)

Query  86   RVFLMPVGDISGLTPNARVIPTQHAREARVGEALLGRVLDGAGRPLDGLPP---PDCEAS  142
            R  L  +G+  GL+ +  + PT +A  A+VG ++LG VLD +G+ ++ + P   P  E  
Sbjct  58   RTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER  117

Query  143  VSLNGRPLNPLARRPIHEPLDVGVRAINGLLTVGRGQRMGLFAGSGVGKSVLLGMMTRYT  202
            V ++  P +  +R  ++EPL  GVRAI+GLLT G GQRMG+FA++G GK++L+ M+   T
Sbjct  118  V-IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQT  176

Query  203  NADVTVVGLIGERGREVNEFVQNILGPEGMaravvvavpaDHPPLMRLHGAMLATSIAEY  262
            +ADV V+GLIGERGREV EFV+ + +++   + V+V   +D P++ R ++A LAT++AEY
Sbjct  177  EADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEY  236

Query  263  FRDQGLNVLLLMDSLTRFAQAQREISLAIGEPPATKGYTPSVFARLPHLVERAGNSDRGE  322
            FRDQG  V+L++DS+TR+A+A R+++LA GE PA +GY +SVF  LP+L+ER+G +  +E
Sbjct  237  FRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGAT--SE  294

Query  323  GTMTAFYTVLTEGDDQNDPIADAARAILDGHVVLSRRIAEAGRYPAIDIEASVSRLMNEI  382
            G++TAFYTVL E++++ DP+AD  R+ILDGH+ LSR++A  G+YPAID+  SVSR+  ++
Sbjct  295  GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQV  354

Query  383  ADPGQIQAARLFKQIYATYQQNRDLISVGAYQKGADPRVDAAIQYYPHLEQYLSQDMREA  442
            + P + + A   +++ +  ++ + +I +G Y+ G +   D A+Q    L   L Q + + 
Sbjct  355  TTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQY  414

Query  443  VDFKESLRALDALMNEE  459
              F ++L +++A+ +++
Sbjct  415  SSFDDTLSGMNAFADQN  431

483) CP0039 in NC_002179


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 174/409 (43%), Positives = 275/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKRNGMEPLV---TEVVGFTQSFAFLSPLGELSGVSPSSE  86
            + G +I A + +V +GE+C ++R   +  V   ++VVG+ +  + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIPTGLPLHIRAgngllgrvlnglgEPID--VETKGPLQNVDQTFPIFRAPPDPLHRAKL  144
            + PTG +L  + G ++LG VL+  G  ++      +P+ + ++ + +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RQILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGR  204
            R+ L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREIDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

484) yscN in NC_000922


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 174/409 (43%), Positives = 275/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKRNGMEPLV---TEVVGFTQSFAFLSPLGELSGVSPSSE  86
            + G +I A + +V +GE+C ++R   +  V   ++VVG+ +  + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIPTGLPLHIRAgngllgrvlnglgEPID--VETKGPLQNVDQTFPIFRAPPDPLHRAKL  144
            + PTG +L  + G ++LG VL+  G  ++      +P+ + ++ + +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RQILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGR  204
            R+ L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREIDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

485) yscN in NC_002491


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 174/409 (43%), Positives = 275/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKRNGMEPLV---TEVVGFTQSFAFLSPLGELSGVSPSSE  86
            + G +I A + +V +GE+C ++R   +  V   ++VVG+ +  + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIPTGLPLHIRAgngllgrvlnglgEPID--VETKGPLQNVDQTFPIFRAPPDPLHRAKL  144
            + PTG +L  + G ++LG VL+  G  ++      +P+ + ++ + +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RQILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGR  204
            R+ L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREIDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

486) CPK_ORF00111 in NC_017285


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 174/409 (43%), Positives = 275/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKRNGMEPLV---TEVVGFTQSFAFLSPLGELSGVSPSSE  86
            + G +I A + +V +GE+C ++R   +  V   ++VVG+ +  + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIPTGLPLHIRAgngllgrvlnglgEPID--VETKGPLQNVDQTFPIFRAPPDPLHRAKL  144
            + PTG +L  + G ++LG VL+  G  ++      +P+ + ++ + +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RQILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGR  204
            R+ L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

487) yopN in NC_005043


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 174/409 (43%), Positives = 275/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKRNGMEPLV---TEVVGFTQSFAFLSPLGELSGVSPSSE  86
            + G +I A + +V +GE+C ++R   +  V   ++VVG+ +  + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIPTGLPLHIRAgngllgrvlnglgEPID--VETKGPLQNVDQTFPIFRAPPDPLHRAKL  144
            + PTG +L  + G ++LG VL+  G  ++      +P+ + ++ + +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RQILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGR  204
            R+ L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREIDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

488) rhcN in NC_018294


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 172/408 (43%), Positives = 274/408 (68%), Gaps = 4/408 (0%)

Query  41   RAVGTLIHAVLPEARIGELCLLQDTR--TGLSLEAEVIGLLDNGVLLTPIGGLAGLSSRA  98
            +  G +I+A L +  IGELC ++  +    +   A+V+GL  +  +L+ IG   GLS   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  99   EVVSTGRMREVPIGPDLLGRVIDSRCRPLD--GKGEVKTTEVRPLHGRAPNPMTRRMVER  156
             + +TGR     +G  +LG V+D+  + ++         +E R ++  +P+  +R  V  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  157  PFPLGVRALDGLLTCGEGQRIGIYGEPGGGKSTLISQIVKGAAADVVIVALIgergrevr  216
            P+  GVRA+DGLLTCG GQR+GI++ +G GK+ L+  ++  + ADV +++LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  217  efverHLGEEGLRRAIVVVETSDRSATERAQCAPMATALAEYFREQGLRVALLLDSLTRF  276
            EFV+   + +   + ++V  TSD ++ +R + A +AT++AEYFR+QG RV L++DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  277  CRAMREIGLAAGEPPTRRGFPPSVFAALPGLLERAGMGERGSITAFYTVLVEGDGTGDPI  336
             RA+R+++LA+GE P+RRG+P+SVF  LP LLER+G    GSITAFYTVL+E++  +DP+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  337  AEESRGIVDGHIVLSRALAARSHFPAIDVLQSRSRVMDAVVSETHRKAASFFRDLLARYA  396
            A+E R+I+DGH+ LSR LA+++H+PAIDVL+S SRV + V + TH   AS  R L++R  
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  397  ECEFLINVGEYKQGGDPLTDRAVASIGELKEFLRQSEDEVSDFEETVG  444
            E +++I++GEY+ G +   DRA+   + LK  L Q+  + S F++T++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

489) Desdi_2869 in NC_019903


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 171/414 (42%), Positives = 281/414 (68%), Gaps = 12/414 (2%)

Query  25   KIVGLMIESDGPRASVGEYCKIHT--QHGQEIP-AEVVGFRNSTTLLMPLAELEGISPGD  81
            KI G +IE++    ++GE C I+   ++ Q ++ A+VVG++   T+L  +++ +G+S + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  82   RVIPQQHKLKVGVGSALLGRIIDGLGQPLDGRPLFTSRDYPLQN------APPNAFQRPR  135
             + P  + L   VG ++LG ++D  G+ ++    FT+   P+ +      APP+   R  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVER---FTPEVAPISEERVIDVAPPSYASRVG  131

Query  136  IRDHLSVGVRTVDglltlgrgqrlgIFAGSGVGKSTLLGMMARNTTASVNVIALVGERGR  195
            +R+ L  GVR++DGLLT G GQR+GIFA++G GK+ L+ M+  +T A V VI+L+GERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  196  ELRDFIEKDLGEAGLERSVLIVATSDQPALVRLKAAFTATAIAEYFRDQGQDVLLMMDSV  255
            E+ +F++   +    E+ VL+ ATSD P++ R +AA  AT++AEYFRDQG+ V+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  256  TRFAMAQREVGLTAGEPPATRGYPPSVFALLPKLLERSGMSESGSITGIYTVLVDGDDHN  315
            TR+A A R+V+L++GE PA RGYP+SVF  LP+LLER+G +  GSIT++YTVL++++++ 
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  316  EPIADSVRGILDGHIVLTRELAMQNHYPAIDTLQSVSRVMNDIISPEHKDLAGKFREHLA  375
            +P+AD +R+ILDGH+ L+R LA Q HYPAID L+SVSRV  ++ +P H + A+  R  ++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  376  VYNDAKDLIDIGAYVTGSNPRIDDAIQHIEGINRFLRQDVEEMATFDEMIEQLK  429
              ++ + +ID+G Y  G N   D A+Q  ++++  L Q V + ++FD+ +  ++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

490) Gura_4210 in NC_009483


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (892),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 167/402 (42%), Positives = 271/402 (68%), Gaps = 7/402 (1%)

Query  41   ETAVGTLCEI--NSHGSDPIP-AEVVGFRDNKTLLMPLGELRGVGLGS-LISVRREKASL  96
            + A+G LCEI    H  + ++ A+VVG++ ++T+L  +G+ +G++ +  L +  R  ++ 
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  97   GVGPALLGRVIDGLGSPIDDRGAIIT--GEEYPIYAMPVNPMKRRPIREPLDLGIRAING  154
             VG ++LG V+D  G  ++   + ++  +EE  I   P +   R  +REPL  G+RAI+G
Sbjct  87   -VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  155  LLTCGEGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGRELREFIEKDLQEEG  214
            LLTCG GQR+GI A++G GK+ L+ M+   TEADV VI+LIGERGRE+ EF++     + 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  215  LKKSVVVVATSDQPPLVRMRGAYIATTIAEYFQAQGKKVLLMMDSATRFAMAMREVGLAI  274
              K V+V ATSD P++ R  +A +ATT+AEYF+ QGK+V+L +DS TR+A A+R+V+LA 
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  275  GEPPTTKGYTPSVFAALPKLLERAGNFHGGSITGLYTVLVEGDDFNEPVSDAMRSILDGH  334
            GE P+ +GY +SVF  LP+LLER+G    GSIT++YTVL+E+++  +P++D +RSILDGH
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  335  IILSRELAARNIYPPIDVLNSASRVMMDVTSREHQKLAGGFKGVLATYRQAEDLINIGAY  394
            + LSR LA++  YP+IDVL+S SRV  +VT+  H   A++ + +++   + + +I++G Y
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  395  KPGSNPKIDYAIAKIEHMNSYLKQDVNDGVEVDAAVASLAEI  436
            +PG N   D A+   + +++ L Q V +    D +++++  +
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

491) fliI in NC_002570


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (891),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 171/419 (41%), Positives = 282/419 (68%), Gaps = 7/419 (1%)

Query  24   RVIGLTIEAKGPQASIGELCYILVGKQGTKVMA--EVVGFKEERVLLMPLNGTAEIAPGS  81
            ++ G  IEA   + +IGELC I  G +  +V+A  +VVG++ ER +L  +  +  ++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  82   LVEGTGRPLQVKVGYSLIGHVIDGCGR---PLTGEALPNGLtpyptdnpppnpisrpriK  138
            ++  TGR+L   VGYS++G V+D  G+    +T E  P +      D +PP+  SR  ++
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPIS-EERVIDVAPPSYASRVGVR  133

Query  139  EAMHLGVRAIDGLLTVGKGQRVGIFAGSGVGKSTLLAMlaknaaadlniialiGERGREV  198
            E++  GVRAIDGLLT G GQR+GIFA++G GK+ L+ ML  ++ AD+ +I+LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  199  KDFIERDLGEDGLRRSIIVVATSDQPALMRIKGAMTATALAEYFRDQGLHVNLMMDSVTR  258
             +F++   + +   + ++V ATSD P++ R ++A  AT++AEYFRDQG +V L +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  259  FAMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNGKGSITGFYTVLVDGDDLNEP  318
            +A A R+++LA GE P+ +GY +SVF  LP+LLER+G+ + GSIT+FYTVL+++++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  319  ISDTVRGILDGHFVLDRELANKGHYPAINILKSVSRVMNDIVTDEQKRAAEHVRSLLSVY  378
            ++D +R+ILDGH+ L R LA +GHYPAI++LKSVSRV  ++ T  +   A  VR L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  379  KESEDLINIGAYKRGSSKQIDEAIERQPEVISFLRQNTDEVAIAEHSIQQLIQAFGKGD  437
             E + +I++G Y+ G + + D A++ +  + + L Q   + +  ++++  + +AF+  +
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM-NAFADQN  431

492) Tlet_1901 in NC_009828


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (892),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 168/419 (41%), Positives = 276/419 (66%), Gaps = 12/419 (2%)

Query  28   NRIIGLTVESTGPDAFLGELCKL--NLDGKKPLC--EVVGFRDGKVLLMPLEDLSGAKHG  83
            ++I G  +E+   D  +GELC +    + K+ +   +VVG++  + +L  + +  G  ++
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  84   TFVYKTNRRLDVGVSEDMKGRIVDGLGRPID----GKPLIAKHRYPLINSAPHPL-KRSR  138
              +Y T R L   V+  + G ++D  G+ ++      + I+ +R  +I+ AP +   R  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVG  131

Query  139  ITAPLPVGVRAIDGFITIGKGQRIGIFAGSGVGKSTLLGMIARNTVADVNVIALIGERGR  198
            +  PL  GVRAIDG++T G GQR+GIFA++G GK+ L+ M+  +T ADV VI+LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  199  EVREFIEK-DLAKGIEKSIVVVSTSDQPALMRSKALYTATSIAEYFRDLGYDVLLMVDSL  257
            EV EF++    +   EK ++V +TSD P++ R +A   AT++AEYFRD G  V+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  258  TRWAMAQREIGLAIGEPPTARGYPPSVFAGIPGILERAGNSDKGSITAIYTVLVEADDFN  317
            TR A A R+++LA GE P+ RGYP+SVF  +P +LER+G +  GSITA+YTVL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  318  EPISDTVRSVVDGHIMLSRRLSELNHYPAIDVLASVSRLMVDIVGHDHLEASRNLRNLMA  377
            +P++D +RS++DGH+ LSR+L+   HYPAIDVL SVSR+  ++    H E +  +R+LM+
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  378  TYYEAKDLIDVGAYKPGSNPQIDRAIKMIDPINSFLKQRIDEKPDYKDTVAELLKLANR  436
               E + +ID+G Y+PG N + DRA++M D++++ L Q + + + + DT++ +  +A++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQ  430

493) fliI in NC_014125


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (890),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 165/393 (42%), Positives = 260/393 (67%), Gaps = 7/393 (1%)

Query  45   PVGARCLVKINDEHS---VQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVG  101
            ++G  C ++   ++     +A+VVG+  E   L  IG+ QG++ ++ + PTGR     VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  102  HQLLGRILNGSGMFIDDGPPGEMVETYPLIGQVINP--LKRAPIEVPLDVGIRAINGLLT  159
              +LG +L+ +G +++   P     +   + +V  P    R  +  PL  G+RAI+GLLT
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  160  VGRGQRIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLRR  219
             G GQR+G+FA++G GK++L+ M+   TEADV V+GLIGERGREV EF++   + +   +
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  220  AVVVAAPADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEA  279
             V+V A +D +++ R ++A++AT++AEYFRDQGK+V+L+IDS+TR+A+A R++AL+ GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  280  PATKGYPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHV  339
            PA +GYP+SVF +LP+L+ER+  G+++ GSITAFYTVL E+++  DP+AD  R+ILDGH+
Sbjct  269  PARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  340  VLSRALAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYA  399
             LSR LA QG+YPAID+  S+SRV   V +  H  +    +K ++  E  + +I LG Y 
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  400  KGSDPLVDKAILAVNKLKDYLAQGMDEQVSYDE  432
             G +   D+A+   + LK  L Q + +  S+D+
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

494) lp12_1695 in NC_016811


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (890),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 165/393 (42%), Positives = 260/393 (67%), Gaps = 7/393 (1%)

Query  46   PVGARCLVKINDEHS---VQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVG  102
            ++G  C ++   ++     +A+VVG+  E   L  IG+ QG++ ++ + PTGR     VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  103  HQLLGRILNGSGMFIDDGPPGEMVETYPLIGQVINP--LKRAPIEVPLDVGIRAINGLLT  160
              +LG +L+ +G +++   P     +   + +V  P    R  +  PL  G+RAI+GLLT
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  161  VGRGQRIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLRR  220
             G GQR+G+FA++G GK++L+ M+   TEADV V+GLIGERGREV EF++   + +   +
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  221  AVVVAAPADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEA  280
             V+V A +D +++ R ++A++AT++AEYFRDQGK+V+L+IDS+TR+A+A R++AL+ GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  281  PATKGYPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHV  340
            PA +GYP+SVF +LP+L+ER+  G+++ GSITAFYTVL E+++  DP+AD  R+ILDGH+
Sbjct  269  PARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  341  VLSRALAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYA  400
             LSR LA QG+YPAID+  S+SRV   V +  H  +    +K ++  E  + +I LG Y 
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  401  KGSDPLVDKAILAVNKLKDYLAQGMDEQVSYDE  433
             G +   D+A+   + LK  L Q + +  S+D+
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

495) fliI in NC_009494


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (890),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 165/393 (42%), Positives = 260/393 (67%), Gaps = 7/393 (1%)

Query  45   PVGARCLVKINDEHS---VQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVG  101
            ++G  C ++   ++     +A+VVG+  E   L  IG+ QG++ ++ + PTGR     VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  102  HQLLGRILNGSGMFIDDGPPGEMVETYPLIGQVINP--LKRAPIEVPLDVGIRAINGLLT  159
              +LG +L+ +G +++   P     +   + +V  P    R  +  PL  G+RAI+GLLT
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  160  VGRGQRIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLRR  219
             G GQR+G+FA++G GK++L+ M+   TEADV V+GLIGERGREV EF++   + +   +
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  220  AVVVAAPADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEA  279
             V+V A +D +++ R ++A++AT++AEYFRDQGK+V+L+IDS+TR+A+A R++AL+ GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  280  PATKGYPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHV  339
            PA +GYP+SVF +LP+L+ER+  G+++ GSITAFYTVL E+++  DP+AD  R+ILDGH+
Sbjct  269  PARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  340  VLSRALAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYA  399
             LSR LA QG+YPAID+  S+SRV   V +  H  +    +K ++  E  + +I LG Y 
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  400  KGSDPLVDKAILAVNKLKDYLAQGMDEQVSYDE  432
             G +   D+A+   + LK  L Q + +  S+D+
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

496) LPE509_01433 in NC_020521


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (890),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 165/393 (42%), Positives = 260/393 (67%), Gaps = 7/393 (1%)

Query  45   PVGARCLVKINDEHS---VQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVG  101
            ++G  C ++   ++     +A+VVG+  E   L  IG+ QG++ ++ + PTGR     VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  102  HQLLGRILNGSGMFIDDGPPGEMVETYPLIGQVINP--LKRAPIEVPLDVGIRAINGLLT  159
              +LG +L+ +G +++   P     +   + +V  P    R  +  PL  G+RAI+GLLT
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  160  VGRGQRIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLRR  219
             G GQR+G+FA++G GK++L+ M+   TEADV V+GLIGERGREV EF++   + +   +
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  220  AVVVAAPADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEA  279
             V+V A +D +++ R ++A++AT++AEYFRDQGK+V+L+IDS+TR+A+A R++AL+ GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  280  PATKGYPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHV  339
            PA +GYP+SVF +LP+L+ER+  G+++ GSITAFYTVL E+++  DP+AD  R+ILDGH+
Sbjct  269  PARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  340  VLSRALAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYA  399
             LSR LA QG+YPAID+  S+SRV   V +  H  +    +K ++  E  + +I LG Y 
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  400  KGSDPLVDKAILAVNKLKDYLAQGMDEQVSYDE  432
             G +   D+A+   + LK  L Q + +  S+D+
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

497) fliI in NC_002942


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (890),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 165/393 (42%), Positives = 260/393 (67%), Gaps = 7/393 (1%)

Query  46   PVGARCLVKINDEHS---VQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVG  102
            ++G  C ++   ++     +A+VVG+  E   L  IG+ QG++ ++ + PTGR     VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  103  HQLLGRILNGSGMFIDDGPPGEMVETYPLIGQVINP--LKRAPIEVPLDVGIRAINGLLT  160
              +LG +L+ +G +++   P     +   + +V  P    R  +  PL  G+RAI+GLLT
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  161  VGRGQRIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLRR  220
             G GQR+G+FA++G GK++L+ M+   TEADV V+GLIGERGREV EF++   + +   +
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  221  AVVVAAPADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEA  280
             V+V A +D +++ R ++A++AT++AEYFRDQGK+V+L+IDS+TR+A+A R++AL+ GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  281  PATKGYPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHV  340
            PA +GYP+SVF +LP+L+ER+  G+++ GSITAFYTVL E+++  DP+AD  R+ILDGH+
Sbjct  269  PARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  341  VLSRALAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYA  400
             LSR LA QG+YPAID+  S+SRV   V +  H  +    +K ++  E  + +I LG Y 
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  401  KGSDPLVDKAILAVNKLKDYLAQGMDEQVSYDE  433
             G +   D+A+   + LK  L Q + +  S+D+
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

498) fliL in NC_021350


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (890),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 165/393 (42%), Positives = 260/393 (67%), Gaps = 7/393 (1%)

Query  45   PVGARCLVKINDEHS---VQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVSVG  101
            ++G  C ++   ++     +A+VVG+  E   L  IG+ QG++ ++ + PTGR     VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  102  HQLLGRILNGSGMFIDDGPPGEMVETYPLIGQVINP--LKRAPIEVPLDVGIRAINGLLT  159
              +LG +L+ +G +++   P     +   + +V  P    R  +  PL  G+RAI+GLLT
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  160  VGRGQRIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLRR  219
             G GQR+G+FA++G GK++L+ M+   TEADV V+GLIGERGREV EF++   + +   +
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  220  AVVVAAPADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEA  279
             V+V A +D +++ R ++A++AT++AEYFRDQGK+V+L+IDS+TR+A+A R++AL+ GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  280  PATKGYPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHV  339
            PA +GYP+SVF +LP+L+ER+  G+++ GSITAFYTVL E+++  DP+AD  R+ILDGH+
Sbjct  269  PARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  340  VLSRALAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYA  399
             LSR LA QG+YPAID+  S+SRV   V +  H  +    +K ++  E  + +I LG Y 
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  400  KGSDPLVDKAILAVNKLKDYLAQGMDEQVSYDE  432
             G +   D+A+   + LK  L Q + +  S+D+
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

499) Sthe_0547 in NC_013523


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (890),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 171/413 (42%), Positives = 279/413 (68%), Gaps = 3/413 (0%)

Query  33   GLTIEAQGLELEIGDICHIYPSRSEEGRIT-AEVVGFRDDRLVLVPLAELrgvrsgsrvv  91
            G  IEA+  ++ IG++C+I  ++ +   ++ A+VVG++ +R VL  +++ +G+  +  + 
Sbjct  18   GPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLY  77

Query  92   arrTSYSVKVGPELLGRVIDGLGRPIDGQGPLLC--RDETrlsssppdplsrmpIEHPLP  149
            +   + S  VG  +LG V+D  G+ ++   P +    +E  +  +PP   SR+ + +PL 
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLI  137

Query  150  TGIRAIDALITCGRGQRLGIFAGSGVGKSTLLGMICRNADCDVRVVALIGERGREVQEFI  209
            TG+RAID+L+TCG GQR+GIFA++G GK+ L+ M+  +++ DV V++LIGERGREV EF+
Sbjct  138  TGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFV  197

Query  210  ERDLGPEGLARSVVVVSTSDQPALLRLKAAWTATMIAEYFRDRGLNVALLMDSVTRLAMA  269
            +   +++   + V+V +TSD P++ R +AA  AT +AEYFRD+G  V L++DS+TR A A
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  270  QREIGLAVGEPPTTRGYTPSVFALLPRLLERAGNAERGSITAFYTVLVEGDDLTEPVTDA  329
             R+++LA GE P+ RGY +SVF  LPRLLER+G +  GSITAFYTVL+E+++ ++P++D 
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  330  VRGILDGHIYLSRKLADSGHFPAIEVLGSVSRLMNAIVDERHRRLAAEVRELMAAYEGAR  389
            +R+ILDGH+YLSRKLA+ GH+PAI+VL SVSR+   +    H   A+ VR LM+  E  +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  390  DLIEIGAYAAGSNPVVDRAIAHMPRIREFLRQAPDEPARMDETLNRLASVLEE  442
             +I++G Y +G N   DRA+     ++  L Q+  + +  D+TL+ + +  ++
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQ  430

500) fliI in NC_010530


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  239 bits (891),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 159/391 (41%), Positives = 266/391 (69%), Gaps = 10/391 (2%)

Query  106  LMPQSDVVGLLPGARVYPLEPSPQPAGISAPREPGSKRLP--VGAGLLGRVLDAAGRPLD  163
            ++++++VVGL     V +L  ++Q  +      P ++ L+  VG ++LG VLD++G+ ++
Sbjct  45   VVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVE  104

Query  164  ----GLGPLAAAMEVPLAGEQINPLMRAPIETVLDTGVRAINGMLTVGRGQRMGLFAGSG  219
                 ++P++    + +A     +  R  +   L TGVRAI+G+LT G GQRMG+FA++G
Sbjct  105  RFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAG  162

Query  220  VGKSVLLGMMARYTSADVIVVGLIGERGREVKEFIENILGPEGRRRSVVVAAPADCSPLL  279
             GK++L+ M+   T ADV+V+GLIGERGREV EF++ + +++ + + V+V A +D +++ 
Sbjct  163  CGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVD  222

Query  280  RMQGAAYATRLAEYFRDQGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL  339
            R ++A  AT +AEYFRDQG++V+L++DS+TRYA A R++ALA GE PA +GYP+SVF +L
Sbjct  223  RCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNL  282

Query  340  PTLVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRSLAEAGHYPA  399
            P L+ER G  +E  GSITAFYTVL E++++ DP+AD  R+ILDGH+ LSR LA  GHYPA
Sbjct  283  PRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPA  340

Query  400  IDVEASISRAMTALIPHEQFGSVRRFKQLMSRYQRNRDLISVGAYVPGNDPELDLAIQLH  459
            IDV  S+SR    +    +       ++LM+R +  + +I +G Y PG++ + D A+Q++
Sbjct  341  IDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMR  400

Query  460  PRMEAFLQQDIHERAGYADAIAALHSLFDRS  490
              + A L Q + + +++ D++++++++ D++
Sbjct  401  DSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

501) SARI_01567 in NC_010067


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  238 bits (889),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 174/385 (46%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDISATLLNAWLPGVFMGELCCIKPG------GEFAEVVGINGSKALLSPFTSTVGLHCG  79
            Q I++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEVLLGRVIDGFGRPLD--GSELPEVCW-KDYDampppamvrrpmT  136
              + +  R     VG  +LG V+D  G+ ++   +E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPGADVNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +   ADV V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLTKESRKRCVIVVATSDRPALERVRALFVATTIAEFFRDHGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAEMGHYPAIDVLATLSRVFPAVTSPEHRQLATTLRRHLALY  376
            +ADE+RS+LDGH+ LSR+LA  GHYPAIDVL ++SRVF  VT+P H + A+++R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QDVELLIRIGEYQRGVDAAADKAID  401
            ++++L+I +GEY+ G +   D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

502) ssaN in NC_011274


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  238 bits (889),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 272/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRSHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R+    VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHrqlaailrrrlalY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

503) I137_05680 in NC_021984


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  238 bits (887),  Expect = 6e-64, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDSPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHrqlaailrrrlalY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

504) fliI in NC_018140


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  238 bits (888),  Expect = 6e-64, Method: Compositional matrix adjust.
 Identities = 165/393 (42%), Positives = 260/393 (67%), Gaps = 7/393 (1%)

Query  45   PVGARCLVKINDEHS---VQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVNVG  101
            ++G  C ++   ++     +A+VVG+  E   L  IG+ QG++ ++ + PTGR     VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  102  HQLLGRVLNGSGMFIDDGPPSEMVETYPLIGQVINP--LKRAPIEVPLDVGIRAINGLLT  159
              +LG VL+ +G +++   P     +   + +V  P    R  +  PL  G+RAI+GLLT
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  160  VGRGQRIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLRR  219
             G GQR+G+FA++G GK++L+ M+   TEADV V+GLIGERGREV EF++   + +   +
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  220  AVVVAAPADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEA  279
             V+V A +D +++ R ++A++AT++AEYFRDQGK+V+L+IDS+TR+A+A R++AL+ GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  280  PATKGYPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHV  339
            PA +GYP+SVF +LP+L+ER+  G+++ GSITAFYTVL E+++  DP+AD  R+ILDGH+
Sbjct  269  PARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  340  VLSRALAEQGQYPAIDLEASISRVMQGIVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYA  399
             LSR LA QG+YPAID+  S+SRV   + +  H  +    +K ++  E  + +I LG Y 
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  400  KGSDPLVDKAILAVNKLKDYLAQGMDEQVSYDE  432
             G +   D+A+   + LK  L Q + +  S+D+
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

505) fliI in NC_009439


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  238 bits (888),  Expect = 6e-64, Method: Compositional matrix adjust.
 Identities = 169/404 (42%), Positives = 272/404 (68%), Gaps = 10/404 (2%)

Query  33   RMVGLTLEAEGLRAAIGSRCLVINGDSYHPVQVEAEVMGFSGGKIYLMPVGSLAGIAPGA  92
            ++ G  +EAE    AIG  C +  G     V   A+V+G+   +  L  +G+  G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD-  73

Query  93   RVVPLPDAGRLP--MGMSMLGRVLDGAGRALD---GKGGMKAEDWVPVDGPAINPLNRDP  147
             VV  P +  L+  +G S+LG VLD +G+ ++      +  +E++V +D ++ +  +R  
Sbjct  74   -VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVG  131

Query  148  ISQPLDVGIRTINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAEIIVVGLIGERGR  207
            + +PL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   TEA+++V+GLIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  208  EVKEFIDEILGAEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDSL  267
            EV EF+D + +++   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  268  TRYAQAQREIALAIGEPPATKGYPPSVFAKLPRLVERAGNGEAGGGSITAFYTVLSEGDD  327
            TRYA+A R++ALA GE PA +GYP+SVF +LPRL+ER+G   ++ GSITAFYTVL E+++
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEE  309

Query  328  QQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIESSISRVMPQVVPPEQLKQAQRFKQL  387
            + DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV  P +  QA   ++L
Sbjct  310  EADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKL  369

Query  388  WSRYQQSRDLISVGAYVPGGDADTDLAIARQPQMAQYLRQGLGE  431
             +R ++ + +I +G Y PG + D D A+  +  +   L Q +++
Sbjct  370  MTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

506) ssaN in NC_006905


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  238 bits (886),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTAGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHrqlaailrrrlalY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

507) fliI in NC_006369


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  238 bits (887),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 165/393 (42%), Positives = 260/393 (67%), Gaps = 7/393 (1%)

Query  45   PIGARCLVKINDEHS---VQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVNVG  101
            +IG  C ++   ++     +A+VVG+  E   L  IG+ QG++ ++ + PTGR     VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  102  HQLLGRILNGSGMFIDDGPPGEMVETYPLIGQVINP--LKRAPIEVPLDVGIRAINGLLT  159
              +LG +L+ +G +++   P     +   + +V  P    R  +  PL  G+RAI+GLLT
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  160  VGRGQRIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLKR  219
             G GQR+G+FA++G GK++L+ M+   TEADV V+GLIGERGREV EF++   + +   +
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  220  AVVVAAPADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEA  279
             V+V A +D +++ R ++A++AT++AEYFRDQGK+V+L+IDS+TR+A+A R++AL+ GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  280  PATKGYPPSVFAKLPKLVERAGNGTAGGGSITAFYTVLTEGDDLQDPIADAARAILDGHV  339
            PA +GYP+SVF +LP+L+ER+  G+++ GSITAFYTVL E+++  DP+AD  R+ILDGH+
Sbjct  269  PARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  340  VLSRALAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYA  399
             LSR LA QG+YPAID+  S+SRV   V +  H  +    +K ++  E  + +I LG Y 
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  400  KGSDPLVDKAILAVNKLKDYLAQGMDEQVSYGE  432
             G +   D+A+   + LK  L Q + +  S+++
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

508) fliI in NC_007517


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  238 bits (887),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 167/417 (41%), Positives = 280/417 (68%), Gaps = 5/417 (1%)

Query  29   QVVGLVIEGYCPDAAVGTLCHVHP--HDGDPIP-AEVVGFRDNKTLLMPLGELRGVGLGS  85
            ++ G +IE+   D A+G LC+++   H+ + ++ A+VVG++ ++T+L  +G+ +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  86   LISVKRKKSSLGVGPGLLGRVIDGLGEPIDDKGP--LATREEYPIYANPVNPMKRRPIRE  143
            ++    +  S  VG ++LG V+D  G  ++   P   +  EE  I   P +   R  +RE
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  144  PLDLGIRAINGLLTCGKGQRVGIMAGSGVGKSTLLGMIARYTEADVNVIALIGERGRELR  203
            PL  G+RAI+GLLTCG GQR+GI A++G GK+ L+ M+   TEADV VI+LIGERGRE+ 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  204  EFIEKDLQEEGLKKSVVVVATSDQPPLVRMRGAYIATTIAEYFQAQGKKVLLMMDSATRF  263
            EF++     +   K V+V ATSD P++ R  +A +ATT+AEYF+ QGK+V+L +DS TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  264  AMAMREVGLAIGEPPTTKGYTPSVFAALPKLLERTGNFMDGSITGLYTVLVEGDDFNEPV  323
            A A+R+V+LA GE P+ +GY +SVF  LP+LLER G   +GSIT++YTVL+E+++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  324  SDAMRSILDGHIVLNRELAARAIYPPIDVLASASRVMMDVTERGQQQFASRFKELLAAHK  383
            +D +RSILDGH+ L+R LA+++ YP+IDVL S SRV  +VT   + + AS  + L++   
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  384  QAEDLINIGAYKPGSNPTIDYAISKMEGMVGYIRQGIHDGVTMEQSVTALGDIFDEG  440
            + + +I++G Y+PG N   D A+   +++ + + Q + +  + +++++++  + D+ 
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

509) Acel_0844 in NC_008578


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  238 bits (886),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 162/375 (44%), Positives = 259/375 (70%), Gaps = 8/375 (2%)

Query  60   AEVVALHDESLACMPL-GDVSGVAVGALVTPTGGPLTVPVGDALLGRVLDGLGRPID---  115
            A+VV+L+ E    ++L G+  G++ + ++ PTG +L+  VG ++LG VLD  G+ ++   
Sbjct  49   AQVVGLQRERTV-LSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFT  107

Query  116  -GKGELRDTIRVGLDATPPHPLRRTRISEQLSLGVRVLDTMTPCGRGQRLGIFAGSGVGK  174
               + + +  RV +D +PP    R  + E L  GVR +D +  CG GQR+GIFA++G GK
Sbjct  108  PEVAPISEE-RV-IDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGK  165

Query  175  SSLLSMIARGTEADVSVIALVGERGREVREFLENDLGEEGLARSVVVVATSDEPALLRLR  234
            + L+ M+   TEADV VI+L+GERGREV EF++   + +   + V+V ATSD P++ R  
Sbjct  166  TMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCN  225

Query  235  AAFVATRIAEWFRDLGRHVILMMDSITRFAMAQREIGLSVGEPAATRGYPPSVFALLPKL  294
            AA +AT +AE FRD G++V+L +DS+TR+A A R+++L+ GE +A RGYP+SVF  LP+L
Sbjct  226  AAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRL  285

Query  295  LERAGAGEHGSITGLYTVLVEGDDMNEPIADTARSILDGHVTLSRRLATSGHYPAVDVLE  354
            LER+GA  +GSIT++YTVL+E+++  +P+AD  RSILDGH+ LSR+LA  GHYPA+DVL 
Sbjct  286  LERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  355  SISRLTGAITTAQQRDDATFLRRILAAHRDARELIDIGAYVPGSNPDVDTALRLQPRITD  414
            S+SR+ G +TT+ + ++A+ +R++++   + + +ID+G Y PG N D D A++++  +  
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  415  FLRQDIRAVTPADQA  429
             L Q +   ++ D++
Sbjct  406  WLCQPVAQYSSFDDT  420

510) fliI in NC_022110


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  238 bits (886),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIVGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

511) SeD_A1928 in NC_011205


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 270/385 (71%), Gaps = 9/385 (2%)

Query  36   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  89
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  90   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  146
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  147  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  206
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  207  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  266
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  326
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQlaailrrrlaly  386
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  lEVELLIRIGEYQRGVDTDTDKAID  411
             E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

512) ssaN in NC_011294


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHrqlaailrrrlalY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

513) ssaN in NC_022221


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHrqlaailrrrlalY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

514) ssaN in NC_016831


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHrqlaailrrrlalY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

515) YE105_C0333 in NC_015224


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 170/385 (45%), Positives = 276/385 (72%), Gaps = 11/385 (2%)

Query  35   DVGPTLLRAHLPGVALGELCRITS----PDMLA--EVVAIEQQTALLSPFASSAGLRCGQ  88
             +   ++ A+L +VA+GELC I       +++A  +VV+++++ ++LS ++++ GL  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  89   WISPLGHEHrvrvgvdllgrvldglgEPID----AGPPLRGHWRELDCPPPDPLTRQPVQ  144
             + P G+    +VG  +LG VLD  G  ++      +P+  + R +D +PP   +R  V+
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRVGVR  133

Query  145  QILTTGIRAIDGVLSCGEGQRIGIFAAAGVGKSSLLSMLCRGCRADIIVLALIGERGREV  204
            + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML     AD++V++LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  205  REFLEQVLTPEtrartvvvvatSDRPALERLKGIYTATTVAEYFRERGEKVLLMADSLTR  264
             EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+L  DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  265  YARAAREIGLAAGEHPAMGSFPTSVFAALPRLLERAGNSERGSITAFYTVLVEGDDMNEP  324
            YARA R+++LA+GE+PA  ++P+SVF  LPRLLER+G +  GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  325  VADEVRSLLDGHIVLSRQLAGAGHYPAIDIAASVSRIMPQIVSAEHRALAQKLRHIQACY  384
            +ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ H   A  +R + +  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  385  QEIELLVRVGEYQEGQDLQADEALQ  409
            +E++L++ +GEY+ G++++ D A+Q
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

516) Y11_35401 in NC_017564


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 170/385 (45%), Positives = 276/385 (72%), Gaps = 11/385 (2%)

Query  35   DVGPTLLRAHLPGVALGELCRITS----PDMLA--EVVAIEQQTALLSPFASSAGLRCGQ  88
             +   ++ A+L +VA+GELC I       +++A  +VV+++++ ++LS ++++ GL  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  89   WISPLGHEHrvrvgvdllgrvldglgEPID----AGPPLRGHWRELDCPPPDPLTRQPVQ  144
             + P G+    +VG  +LG VLD  G  ++      +P+  + R +D +PP   +R  V+
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEE-RVIDVAPPSYASRVGVR  133

Query  145  QILTTGIRAIDGVLSCGEGQRIGIFAAAGVGKSSLLSMLCRGCRADIIVLALIGERGREV  204
            + L TG+RAIDG+L+CG GQR+GIFA+AG GK+ L+ ML     AD++V++LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  205  REFLEQVLTPEtrartvvvvatSDRPALERLKGIYTATTVAEYFRERGEKVLLMADSLTR  264
             EF++ + +++ + + V+V ATSD P+++R ++   ATTVAEYFR++G +V+L  DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  265  YARAAREIGLAAGEHPAMGSFPTSVFAALPRLLERAGNSERGSITAFYTVLVEGDDMNEP  324
            YARA R+++LA+GE+PA  ++P+SVF  LPRLLER+G +  GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  325  VADEVRSLLDGHIVLSRQLAGAGHYPAIDIAASVSRIMPQIVSAEHRALAQKLRHIQACY  384
            +ADE+RS+LDGH+ LSR+LAG GHYPAID+  SVSR+  Q+ ++ H   A  +R + +  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  385  QEIELLVRVGEYQEGQDLQADEALQ  409
            +E++L++ +GEY+ G++++ D A+Q
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

517) CAP2UW1_3803 in NC_013194


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 149/343 (44%), Positives = 240/343 (70%), Gaps = 4/343 (1%)

Query  127  VGESLLGRVLDGAGRPLDKLGP--LHARSLRPLQSRPVNPMSRAPIDKALDVGVRAINGL  184
            VG S+LG VLD +G+ ++++ P        R ++  P +  SR  +  +L  GVRAI+GL
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  185  LCVGQGQRMGLFAGSGVGKSVLLGMMARYTEAEIIVVGLIGERGREVKEFIEQILGEEGL  244
            L  G GQRMG+FA++G GK++L+ M+   TEA+++V+GLIGERGREV EF++ + + +  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  245  RRSVVIAAPADVSPLMRLQGAAYATCIAEYFRDRGRHVLLIMDSLTRYAMAQREIALAIG  304
             + V++ A +D +++ R ++A  AT +AEYFRD+G++V+L++DS+TRYA A R++ALA G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  305  EPPVTRGYPPSVFARLPQLVERAGNGADGGGSITGFYTVLAEGDDQQDPIADAARAILDG  364
            E P  RGYP+SVF  LP+L+ER+G  ++  GSIT+FYTVL E++++ DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  365  HIVLSRTLADAGHYPAIDIEQSISRAMVNLVSPGHLEQIRNFKRLFSRYQRSRDLISVGA  424
            H+ LSR LA+ GHYPAID+ +S+SR   ++ +P H EQ    ++L +R +  + +I +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  425  YAAGSDPQLDQAIAIYPRFESFLQQSLAQPADFASSLRELQAL  467
            Y +G + + D+A+ +   + + L Q++AQ + F  +L  ++A+
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

518) sctN in NC_010287


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + ++V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

519) sctN in NC_017434


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

520) sctN in NC_017436


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

521) SOTOND1_00711 in NC_020967


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (885),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAEGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

522) SOTOND5_00709 in NC_020943


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

523) SOTOND6_00709 in NC_020968


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

524) yscN in NC_000117


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

525) E11023_03530 in NC_017431


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

526) E150_03560 in NC_017439


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

527) BOUR_00713 in NC_020971


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

528) SOTONE8_00714 in NC_020942


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

529) sctN in NC_017952


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

530) sctN in NC_017951


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

531) sctN in NC_017953


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

532) G11074_03530 in NC_017440


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

533) G11222_03550 in NC_017430


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

534) CTG9301_03540 in NC_017432


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

535) G9768_03530 in NC_017429


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

536) SOTONG1_00709 in NC_020941


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

537) SOTONIA1_00712 in NC_020970


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

538) sctN in NC_020511


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

539) sctN in NC_020512


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

540) CTJTET1_03570 in NC_021892


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

541) SOTONK1_00709 in NC_020965


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

542) L1115_00704 in NC_020929


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + ++V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

543) L1224_00704 in NC_020973


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + ++V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

544) L1440_00707 in NC_020937


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + ++V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

545) L225667R_00706 in NC_020930


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + ++V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

546) CTLFINAL_00205 in NC_021052


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + ++V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

547) CTLINITIAL_00205 in NC_021050


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + ++V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

548) L2B795_00704 in NC_020938


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

549) L2B8200_00703 in NC_020945


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

550) L2BAMS1_00703 in NC_020933


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

551) L2BAMS2_00703 in NC_020934


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

552) L2BAMS3_00703 in NC_020977


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

553) L2BAMS4_00704 in NC_020978


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

554) L2BAMS5_00704 in NC_020936


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

555) L2BCAN1_00705 in NC_020935


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

556) L2BCAN2_00704 in NC_020932


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

557) L2BCV204_00703 in NC_020976


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

558) sctN in NC_010280


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

559) L2BUCH2_00703 in NC_020931


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

560) L3404_00704 in NC_020974


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + ++V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

561) CTRC69_03565 in NC_021895


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

562) CTRC342_03595 in NC_021890


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

563) CTRC852_03610 in NC_021888


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

564) CTRC943_03525 in NC_021896


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

565) CTRC953_03525 in NC_021889


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + ++V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

566) CTRC966_03535 in NC_021898


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

567) CTRC971_03545 in NC_021899


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + ++V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

568) CTRC122_03570 in NC_021891


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

569) CTRC55_03545 in NC_021893


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + ++V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

570) CTRC3_03575 in NC_021897


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + ++V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

571) CTRC46_03545 in NC_021887


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + ++V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

572) sctN in NC_017441


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

573) SOTONE4_00708 in NC_020969


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

574) SOTONF3_00708 in NC_020964


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

575) SOTONIA3_00712 in NC_020940


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

576) L2BLST_00703 in NC_020975


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

577) L11322_00704 in NC_020972


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

578) fliI in NC_022106


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

579) fliI in NC_022107


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

580) fliI in NC_022108


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

581) fliI in NC_022109


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

582) fliI in NC_022117


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

583) fliI in NC_022118


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

584) fliI in NC_022119


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (885),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAEGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

585) fliI in NC_022120


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

586) fliI in NC_022121


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (884),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 276/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

587) Psest_1722 in NC_019936


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (883),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 170/420 (41%), Positives = 278/420 (67%), Gaps = 16/420 (3%)

Query  33   RMVGLTLEAEGLRAAVGSRCLVINDDSYHPTEV--EAEVMGFSSGKLYLMPVGSLAGIAP  90
            ++ G  +EAE    A+G  C +    + H  +V   A+V+G+   +  L  +G+  G++ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRR--GWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS-  71

Query  91   GARVVPLVNTGR-LP--MGTSMLGRVLDGAGRALD---GKGGMKAEDWVPMDGPVINPLK  144
              R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  
Sbjct  72   --RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-S  128

Query  145  RHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGE  204
            R  + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   TEAD++V+GLIGE
Sbjct  129  RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGE  188

Query  205  RGREVKEFIENILGEESIKRSVVVASPADEAPLMRLRAAQYCTRIAEYFRDKGKNVLLLM  264
            RGREV EF++ + + +   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++
Sbjct  189  RGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFI  248

Query  265  DSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPSLVERAGNAEQGGGSITAFYTVLSE  324
            DS+TRYA+A R++ALA GE PA +GYP+SVF +LP L+ER+G + +  GSITAFYTVL E
Sbjct  249  DSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLE  306

Query  325  GDDQQDPIADAARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVSADHVRASQRF  384
            ++++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV ++ H   +   
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  385  KQLWSRYQQSRDLISVGAYVPGGDPETDMAIARQAEMVRYLRQGLGESENLDQSAAQLAA  444
            ++L +R ++ + +I +G Y PG + + D A+  +  +   L Q +++  ++D++ + + A
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

588) Desor_4887 in NC_016584


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (885),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 164/401 (41%), Positives = 270/401 (68%), Gaps = 10/401 (2%)

Query  10   SVGEYCHII-TRDGREL--PAEVVGFRDSTTLLMPLGELEGISPGDCVLSQRQKLTVPVG  66
            ++GE C+I   ++ +++   A+VVG++   T+L  +G+ +G+S +  + +  + L+  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  67   PSLLGRILDGLG-----YPLDGRPLKTEISYPLHNKPPNALLRPRILESLSVGVRPIDGM  121
             S+LG +LD  G     +  +  P+  E    ++  PP+   R  + E+L  GVR+IDG+
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERV--IDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  122  LTIGRGQRMGIFAGSGVGKSTLLGMMARNTVADINVIALIGERGRELRDFIEKDLGPEGL  181
            LT G GQRMGIFA++G GK+ L+ M+  +T AD+ VI+LIGERGRE+ +F++   +++  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  182  ARSVIIVATSDQPALVRLKAAFTATAVAEYFRDNGQNVLLMMDSVTRFAMAQREVGLTVG  241
             + V++ ATSD P++ R +AA  AT+VAEYFRD+G+ V+L +DS+TR+A A R+V+L+ G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  242  EPPATRGYPPSVFALLPKLLERSGMAEIGSITGIYTVLVDGDDHNEPIADSVRGILDGHI  301
            E PA RGYP+SVF  LP+LLER+G +  GSIT++YTVL++++++ +P+AD +R+ILDGH+
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  302  VLTRELAMQNQFPAIDILQSVSRVMNDVVSQEQLELAGKVREHIAVYRDAKDLIDIGAYT  361
             L+R LA Q ++PAID+L+SVSRV  +V +  + E A+ VR  ++   + + +ID+G Y 
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  362  PGSNPKIDAAIAHMDRILAFNRQRVDEQVKYEEMLQHLKGI  402
            PG N   D A+   D + A   Q V +   +++ L  ++++
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

589) ssaN in NC_012125


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  237 bits (885),  Expect = 9e-64, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTTGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GRELPEVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHrqlaailrrrlalY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

590) Bcenmc03_4658 in NC_010515


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 149/336 (45%), Positives = 234/336 (70%), Gaps = 6/336 (1%)

Query  100  GRIVDGLGEPIDDRGPLVGDAVLDLAPPRVNPLRKQPVEGVMDVGVRAIDGMLTLGRGQR  159
            G+IV+ +   +   +P+  + V+D+APP   +  +  V   +  GVRAIDG+LT G GQR
Sbjct  100  GKIVERFTPEV---APISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTCGVGQR  154

Query  160  VGLFAGSGVGKSVLLGMIARQTAADVVVVGMIGERGREVREFIEHSLGPEGLSKAIVVVA  219
            +G+FA++G GK++L+ M+  QT ADV V+G+IGERGREV EF++   +++   K ++V A
Sbjct  155  MGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFA  214

Query  220  PADESPLMRLMATELCHAIATHFRDAGNDVLLMIDSLTRYAMAQREIALALGEPPATRGY  279
             +D +++ R  A++L  ++A  FRD G+ V+L IDS+TRYA A R++ALA GE PA RGY
Sbjct  215  TSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGY  274

Query  280  PPSVFGMLPRLVERAGNGEGVGSMSAIYTVLAEGDDEQDPVVDTARAILDGHIMLSRDLA  339
            P+SVF+ LPRL+ER+G     GS++A+YTVL E+++E DP+ D  R+ILDGH+ LSR LA
Sbjct  275  PASVFDNLPRLLERPGATSE-GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLA  333

Query  340  SQGHYPAIDVLRSVSRCMSLVAPREQIDAVHKVKQMMSRYANVRDLIPLGGYVAGADLVT  399
            +QGHYPAIDVL+SVSR  + V+   + +    V+++M+R  +++ +I LG Y +G ++  
Sbjct  334  GQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDN  393

Query  400  DHAVKMHDRIEAFLCQAQDEVAPRQATLDILTEIAA  435
            D+A++M+D + A LCQ+  + ++ + TL  +  +A 
Sbjct  394  DRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

591) ssaN in NC_003198


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GCELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADCNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHrqlaailrrrlalY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

592) STBHUCCB_13730 in NC_016832


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GCELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADCNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHrqlaailrrrlalY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

593) TY21A_06520 in NC_021176


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GCELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADCNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHrqlaailrrrlalY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

594) ssaN in NC_004631


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 173/385 (45%), Positives = 271/385 (71%), Gaps = 9/385 (2%)

Query  26   QDVSATLLNAWLPGVFMGELCCIKPG------EELAEVVGINGSKALLSPFTSTIGLHCG  79
            Q +++ +++A L +V +GELC I+ G         A+VVG++  +++LS + ++ GL  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   QQVMALRRRHQVPVGEALLGRVIDGFGRPLD--GCELPDVCW-KDYDAMPPPAMVRQPIT  136
              + +  R     VG ++LG V+D  G+ ++    E++ +   +  D  PP+   R  + 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  137  QPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADCNVLVLIGERGREV  196
            +PL+TG+RAID++ TCG GQR+GIF+++G GK+ L+ ML +  +AD  V+ LIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  197  REFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTR  256
             EF+D   + + + +CV+V ATSD P+++R  A  +ATT+AE+FRD+GKRVVL+ DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  257  YaraareialaagetaVSGEYPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEP  316
            YARA R++ALA+GE +    YP++VF  LPRLLER G    GSITAFYTVL+E+++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  317  LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHrqlaailrrrlalY  376
            +ADE+RS+LDGH+ LSR+LA +GHYPAIDVL ++SRVF  VT+  H + A+ +R+ ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  377  QEVELLIRIGEYQRGVDTDTDKAID  401
            +E++L+I +GEY+ G + D D+A++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQ  398

595) B602_0041 in NC_018623


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 175/403 (44%), Positives = 272/403 (68%), Gaps = 5/403 (1%)

Query  2    LIKAVVPNVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFAFLSPLGELTGVSPSSEVIPT  58
            +I A + +V +GE+C ++R  H  + +  ++VVG+ ++ + LS +G+  G+S    + PT
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  59   GLPLHIRAgngllgrvlnglgEPIDSETKGPLVDVNETYPIFRAPPDPLHREKLRTILST  118
            G +L  + G ++LG VL+  G  ++  T   +  ++E   I  APP    R  +R  L T
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTPE-VAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  119  GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFI  178
            GVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV EF+
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREVTEFV  197

Query  179  EGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARA  238
            +   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR+ARA
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  239  LREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADE  298
            LR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P+ADE
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  299  VKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANE  358
            ++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++    +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  359  MLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  401
            ++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

596) BN356_0371 in NC_019391


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 273/407 (68%), Gaps = 5/407 (1%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSE  86
            + G +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIPTGMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRT  146
            + PTG +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  147  ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREV  206
             L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREV  193

Query  207  REFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTR  266
             EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARALREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEP  326
            +ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VADEVKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKY  386
            +ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  KANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
               +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

597) B600_0044 in NC_018621


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 273/407 (68%), Gaps = 5/407 (1%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSE  86
            + G +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIPTGMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRT  146
            + PTG +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  147  ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREV  206
             L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREV  193

Query  207  REFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTR  266
             EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARALREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEP  326
            +ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VADEVKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKY  386
            +ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  KANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
               +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

598) sctN in NC_016798


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 275/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLESVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+   + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

599) CTO_0726 in NC_017437


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 275/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLESVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+   + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

600) A363_00718 in NC_020966


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 275/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLESVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+   + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

601) A5291_00717 in NC_020939


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 275/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLESVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+   + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

602) sctN in NC_007429


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 275/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLESVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+   + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

603) sctN in NC_012686


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 275/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLESVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+   + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

604) sctN in NC_012687


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 275/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLESVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+   + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

605) A7249_00716 in NC_020944


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (882),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 173/409 (43%), Positives = 275/409 (68%), Gaps = 9/409 (2%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VMATGLPLHIRAgegllgrvlnglgNPID--TETKGPLESVDAIYPIFKAPPDPLHRAKL  144
            + +TG +L  + G ++LG VL+  G+ ++  T   +P+   + +  +  APP    R  +
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGV  132

Query  145  RTILSTGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGR  204
            R  L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGR
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGR  191

Query  205  EVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSV  264
            EV EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  265  TRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMN  324
            TR+ARALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  325  EPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLA  384
            +P+ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R +++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  385  KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
            +    +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

606) G5O_0045 in NC_017287


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 273/407 (68%), Gaps = 5/407 (1%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSE  86
            + G +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIPTGMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRT  146
            + PTG +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  147  ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREV  206
             L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREV  193

Query  207  REFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTR  266
             EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARALREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEP  326
            +ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VADEVKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKY  386
            +ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  KANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
               +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

607) AO9_00175 in NC_020248


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 273/407 (68%), Gaps = 5/407 (1%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSE  86
            + G +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIPTGMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRT  146
            + PTG +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  147  ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREV  206
             L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREV  193

Query  207  REFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTR  266
             EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARALREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEP  326
            +ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VADEVKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKY  386
            +ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  KANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
               +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

608) B712_0041 in NC_018626


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 273/407 (68%), Gaps = 5/407 (1%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPASE  86
            + G +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIPTGMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRT  146
            + PTG +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  147  ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREV  206
             L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREV  193

Query  207  REFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTR  266
             EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARALREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEP  326
            +ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VADEVKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKY  386
            +ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  KANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
               +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

609) Cpsi_0431 in NC_014796


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 273/407 (68%), Gaps = 5/407 (1%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSE  86
            + G +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIPTGMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRT  146
            + PTG +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  147  ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREV  206
             L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREV  193

Query  207  REFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTR  266
             EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARALREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEP  326
            +ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VADEVKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKY  386
            +ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  KANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
               +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

610) fliI in NC_018139


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (880),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 164/387 (43%), Positives = 256/387 (67%), Gaps = 7/387 (1%)

Query  45   PIGARCLVKINDEHS---VQAEVVGFSNESVYLMSIGDIQGIAPGMKIIPTGRIAQVNVG  101
            +IG  C ++   ++     +A+VVG+  E   L  IG+ QG++ ++ + PTGR     VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  102  HQLLGRILNGSGMFIDDGPPGEMVETYPLIGQVINP--LKRAPIEVPLDVGIRAINGLLT  159
              +LG +L+ +G +++   P     +   + +V  P    R  +  PL  G+RAI+GLLT
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  160  VGRGQRIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIECNLGLEGLKR  219
             G GQR+G+FA++G GK++L+ M+   TEADV V+GLIGERGREV EF++   + +   +
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  220  AVVVAAPADESPLMRLHGAKVATSIAEYFRDQGKHVLLLIDSLTRFAQAQREIALSIGEA  279
             V+V A +D +++ R ++A++AT++AEYFRDQGK+V+L+IDS+TR+A+A R++AL+ GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  280  PATKGYPPSVFAKLPKLVERAGNGTSGGGSITAFYTVLTEGDDLQDPIADAARAILDGHV  339
            PA +GYP+SVF +LP+L+ER+  G+++ GSITAFYTVL E+++  DP+AD  R+ILDGH+
Sbjct  269  PARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  340  VLSRALAEQGQYPAIDLEASISRVMQGVVSEQHMKDMLLFKKYLSVYEKNKDLILLGAYA  399
             LSR LA QG+YPAID+  S+SRV   V +  H  +    +K ++  E  + +I LG Y 
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  400  KGSDPLVDKAILAVNKLKDYLAQGMDE  426
             G +   D+A+   + LK  L Q + +
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQ  413

611) fliI in NC_020829


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (881),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 169/413 (41%), Positives = 279/413 (68%), Gaps = 14/413 (3%)

Query  33   RMVGLTLEAEGLQASVGSRCQVINDGGYHPVQV--EAEVMGFSGSKIYLMPVGSLAGIAP  90
            ++ G  +EAE  + ++G  C++    G H  QV   A+V+G+   +  L  +G+  G++ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRR--GWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSR  72

Query  91   GARVVPLPDSGRLP--MGMSMLGRVLDGVGRALD---GKGGMRAEDWVPMEGPIINPLAR  145
            +  VV  P +  L+  +G S+LG VLD  G+ ++      +  +E++V   +P   + +R
Sbjct  73   D--VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SR  129

Query  146  DPIHEPMDVGIRSINSLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTKADIIVVGLIGER  205
              ++EP+  G+R+I++LLT G GQR+G+FA++G GK++L+ M+   T AD++V+GLIGER
Sbjct  130  VGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGER  189

Query  206  GREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMD  265
            GREV EF++ + + +   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++D
Sbjct  190  GREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFID  249

Query  266  SLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPRLVERAGNGEKGGGSITAFYTVLSEG  325
            S+TRYA+A R++ALA GE PA +GYP+SVF +LPRL+ER+G    + GSITAFYTVL E+
Sbjct  250  SMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLES  307

Query  326  DDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASISRVMPQVTSPEHLRDAQRFK  385
            +++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QVT+P H  +A   +
Sbjct  308  EEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVR  367

Query  386  QLWSRYQQSRDLISVGAYVAGGDPETDLAIQRFPIMRQFLRQALDESQNLDDS  438
            +L +R ++ + +I +G Y +G + + D A+Q    ++  L Q++ +  ++DD+
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

612) sctN in NC_003361


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (879),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 272/407 (67%), Gaps = 5/407 (1%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKRQGMEPLV---TEVVGFTQSFAFLSPLGELSGVSPSSE  86
            + G +I A + +V +GE+C ++R   +  V   ++VVG+ +  + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIPTGLPLYIRAgngllgrvlnglgEPIDTELKGPLVDVNETYPVFRAPPDPLHREKLRT  146
            + PTG +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  147  ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREV  206
             L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREV  193

Query  207  REFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTR  266
             EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEP  326
            +ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKY  386
            +ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  KANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
               +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

613) fliI in NC_017532


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  236 bits (879),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 169/420 (41%), Positives = 277/420 (66%), Gaps = 16/420 (3%)

Query  33   RMVGLTLEAEGLRAAVGSRCLVINDDSYHPTEV--EAEVMGFSSGKLYLMPVGSLAGIAP  90
            ++ G  +EAE    A+G  C +    + H  +V   A+V+G+   +  L  +G+  G++ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRR--GWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS-  71

Query  91   GARVVPLVNTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMRAEDWVPMDGPVINPLK  144
              R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  
Sbjct  72   --RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-S  128

Query  145  RHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGE  204
            R  + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   TEAD++V+GLIGE
Sbjct  129  RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGE  188

Query  205  RGREVKEFIENILGEESIKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLM  264
            RGREV EF++ + + +   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++
Sbjct  189  RGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFI  248

Query  265  DSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPSLVERAGNAEQGGGSITAFYTVLSE  324
            DS+TRYA+A R++ALA GE PA +GYP+SVF +LP L+ER+G + +  GSITAFYTVL E
Sbjct  249  DSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLE  306

Query  325  GDDQQDPIADAARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVSAEHVRASQRF  384
            ++++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV ++ H   +   
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  385  KQLWSRYQQSRDLISVGAYVPGGDPETDMAIARQAEMVSYLRQGLDESEGLSQSAAQLAA  444
            ++L +R ++ + +I +G Y PG + + D A+  +  + + L Q + +  ++ ++ + + A
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

614) hrcN in NC_014500


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  235 bits (878),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 178/406 (44%), Positives = 281/406 (70%), Gaps = 10/406 (2%)

Query  55   IGDLCLVARD-DSSQVLA--EIVGFSPENTFLSALGALDGIAQGAVVTPLYQPHCVQVSD  111
            IG+LC + R+ +  QV+A  ++VG+  E T LS +G  +G++++ V+ P  ++    V+ 
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY  89

Query  112  ALFGSVLDGFGRPLEDGGHSAFVEPGSLNATPIPVIGDAPPP-TERPRIADPLPTGMRAI  170
            +++G+VLD  G+ +E      F  P     +   VI+ APP+ + R  + +PL TG+RAI
Sbjct  90   SVLGAVLDPTGKIVER-----FT-PEVAPISEERVIDVAPPSYASRVGVREPLITGVRAI  143

Query  171  DGLLTIGCGQRVGVFAGAGCGKTTLLAELARNTPCDAIVFGLIGERGRELREFLDHELDE  230
            DGLLT G GQR+G+FA+AGCGKT L+  L  +T  D +V+GLIGERGRE+ EF+D     
Sbjct  144  DGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRAS  203

Query  231  QLRSRTVLVCSTSDRSSMeraraaftataiaeafraaGKQVLLIIDSLTRFARAQREIGL  290
            + + + VLV +TSD +S++R  AA  AT++AE FR  GK+V+L+IDS+TR+ARA R+++L
Sbjct  204  HKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVAL  263

Query  291  ALGEPQGRGGLPPSVYTLLPRLVERAGQTRQGAITALYSVLIEQDSMNDPVADEVRSLID  350
            A GE  +R G P+SV+  LPRL+ER+G T +G+ITA+Y+VL+E +   DP+ADE+RS++D
Sbjct  264  ASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILD  323

Query  351  GHIVLSRRLAERNHYPAIDVLMSLSRTMSNVVERDHTRHANAVRRLMAAYKQVEMLIRLG  410
            GH+ LSR+LA + HYPAIDVL S+SR  ++V    H+ +A+AVR+LM+   +++++I LG
Sbjct  324  GHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLG  383

Query  411  EYQPGHDAFTDAAVSANDDINRFLQQAMREPQGFDHIQSQLEEVSQ  456
            EY+PG++   D A+   D ++  L Q++ +  +FD+  S ++  ++
Sbjct  384  EYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

615) fliI1 in NC_007899


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  235 bits (877),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 273/407 (68%), Gaps = 5/407 (1%)

Query  30   VVGMLIKAVVPDVRVGEVCLVKRQGMEPLV---TEVVGFTQHFAFLSPLGELTGVSPSSE  86
            + G +I A + DV +GE+C ++R   +  V   ++VVG+ ++ + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIPTGLPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRT  146
            + PTG +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  147  ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREV  206
             L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREV  193

Query  207  REFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTR  266
             EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARALREVGLAAGEPPARAGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEP  326
            +ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKY  386
            +ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  KANEMLIRIGEYRRGSDRGVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
               +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

616) LILAB_19900 in NC_015711


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  235 bits (877),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 174/420 (42%), Positives = 277/420 (66%), Gaps = 14/420 (3%)

Query  27   LTGLIIKASVPNVRVGELVLIK---SRNRGAVKAEVVGFQGDEVMLMPLGELQGIGPDSE  83
            +TG II A + +V +GEL  I+    +++   +A+VVG+Q +  +L  +G+ QG++ D  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  84   VIPTGRPLSIKCGEALLGRVLNGIGEPMD-----GQPLPEEGLIEWSVDRDCPDPF-TRQ  137
            + PTGR+LS   G ++LG VL+  G  ++       P++EE +I+       P ++ +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID-----VAPPSYASRV  130

Query  138  RIERPLPLGVRCIDGLLTVGEGQRVGLFAGSGVGKSTLMGQIARNTQADLCVVALIGERG  197
             +  PL  GVR IDGLLT G GQR+G+FA++G GK+ LM  +  +T+AD+ V++LIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  198  REVREFIEDAMGEEGMKRSVLVCATSDQPSLVRLRAAYVATAIAEYFRERGGNVLFMLDT  257
            REV EF++   + +   + VLV ATSD PS+ R  AA +AT++AEYFR++G  V++ +D+
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  258  VTRLARAQREIGLAVGEPPARQGYPPSVFSMLPRILERTGNSEKGKCTAIYTCLVAGGDM  317
            +TR ARA R+++LA GE PAR+GYP+SVF  LPR+LER G +  G  TA+YT L+ + + 
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  318  EEPIADEVRGILDGHFILNRALGERNQWPAMDVLASLSRVMSGIVSKDHKKAAGRLRELL  377
             +P+ADE+R+ILDGH+ L+R L+ + + PA+DVL S+SRV + + +  H   A+ +R L+
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  378  STYEKQRDLILLGAYQYGTDPRTDQAIDKYDAIIDFLKQDTHSNSAFEDTVSQLIALFDE  437
            +  E  + +I LG Y+ G +   D+A++  D++   L Q     S+F+DT+S + A+ D+
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQ  430

617) fliI in NC_018028


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  235 bits (877),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 270/407 (67%), Gaps = 16/407 (3%)

Query  33   RMVGLTLEAEGLRAAVGSRCLVINDDSYHPTEV--EAEVMGFSSGKLYLMPVGSLAGIAP  90
            ++ G  +EAE    A+G  C +    + H  +V   A+V+G+   +  L  +G+  G++ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRR--GWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS-  71

Query  91   GARVVPLVNTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMRAEDWVPMDGPVINPLK  144
              R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  
Sbjct  72   --RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-S  128

Query  145  RHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGE  204
            R  + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   TEAD++V+GLIGE
Sbjct  129  RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGE  188

Query  205  RGREVKEFIENILGEESIKRSVVVASPADEAPLMRLRAAQYCTRIAEYFRDQGKNVLLLM  264
            RGREV EF++ + + +   + V+V + +D +++ R  AAQ  T +AEYFRDQGK V+L++
Sbjct  189  RGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFI  248

Query  265  DSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPSLVERAGNAEQGGGSITAFYTVLSE  324
            DS+TRYA+A R++ALA GE PA +GYP+SVF +LP L+ER+G + +  GSITAFYTVL E
Sbjct  249  DSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLE  306

Query  325  GDDQQDPIADAARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVSAEHVRASQRF  384
            ++++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV ++ H   +   
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  385  KQLWSRYQQSRDLISVGAYVPGGDPETDMAIARQAEMVSYLRQGLDE  431
            ++L +R ++ + +I +G Y PG + + D A+  +  + + L Q + +
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

618) Alvin_2939 in NC_013851


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  235 bits (876),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 172/379 (46%), Positives = 257/379 (68%), Gaps = 14/379 (3%)

Query  76   AEVVGFQGERTFLMPEGKLEGLAPGARIEPLEQARRIPVGPALLGRVVDALGKPLDGGGP  135
            A+VVG+Q ERT L   G+ +GL+ +  + P  +A    VG ++LG V+D+ GK ++   P
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  136  IRTAEMAPI-EGRPINPL-----GRVPVTEPLDVGIRALNGLLSVGRGQRIGLFAGSGVG  189
                E+API E R I+       +RV V EPL  G+RA++GLL+ G GQR+G+FA++G G
Sbjct  109  ----EVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCG  164

Query  190  KSVLLGMMTRHTAADVIVVGLIGERGREVNEFIYDILDEESRK-RTVVVAVPADQSPLLR  248
            K++L+ M+  +T ADV+V+GLIGERGREV EF+ D+L    +K + V+V   +D +++ R
Sbjct  165  KTMLMHMLIEQTEADVFVIGLIGERGREVTEFV-DMLRASHKKEKCVLVFATSDFPSVDR  223

Query  249  QHGAWVSTTIAESFRDRGLNVLLLMDSLTRFAQGAREIAMAIGEPPATKGYSASVFARLP  308
             ++A ++TT+AE FRD+G  V+L++DS+TR+A++ R++A+A GE PA +GY+ASVF  LP
Sbjct  224  CNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLP  283

Query  309  QLVERAGNGDKGGGSITAFYTVLAEGDDQNDPIVDSARAILDGHVVLSREIAETGRYPAI  368
            +L+ER+G    + GSITAFYTVL E++++ DP+ D  R+ILDGH+ LSR +A  G+YPAI
Sbjct  284  RLLERPGA--TSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAI  341

Query  369  DVGASVSRVMSAVVTPEHQKAAYRFRNLMSTYARNRDLIAVGAYRKGSDPQLDEAVAMNP  428
            DV  SVSRV + V TP H   A   R+LM+     + +I +G YR G + + D A+ M  
Sbjct  342  DVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRD  401

Query  429  RLEAYLGQNRLEKASFEDS  447
             L A L Q   + +SF+D+
Sbjct  402  SLKAWLCQPVAQYSSFDDT  420

619) CTL2C_679 in NC_015744


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  235 bits (875),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 171/405 (43%), Positives = 274/405 (68%), Gaps = 9/405 (2%)

Query  2    LIKAVVPDVRVGEVCLVKR--HGMEPLV-TEVVGFTQNFVFLSPLGELTGVSPSSEVMAT  58
            +I A + DV +GE+C ++R  H  + +  ++VVG+ ++   LS +G+  G+S    + +T
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  59   GLPLHIRAgegllgrvlnglgNPID--TETKGPLENVDAIYPIFKAPPDPLHRAKLRTIL  116
            G +L  + G ++LG VL+  G+ ++  T   +P+ + + +  +  APP    R  +R  L
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISE-ERVIDV--APPSYASRVGVREPL  136

Query  117  STGVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIGERGREVRE  176
             TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EAD+ VI+LIGERGREV E
Sbjct  137  ITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREVTE  195

Query  177  FIENDLGEEGMKRSIIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFA  236
            F++   + +   + ++V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  237  RALREVGLAAGEPPARAGYTPSVFSTLPKLLERAGASDKGTITAFYTVLVAGDDMNEPVA  296
            RALR+V+LA+GE PAR GY +SVF  LP+LLER+GA+  G+ITAFYTVL+ +++  +P+A
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  297  DEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGRAREVLAKYKA  356
            DE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++   
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  357  NEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  401
             +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

620) CAB036 in NC_004552


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  235 bits (876),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 273/407 (68%), Gaps = 5/407 (1%)

Query  30   VVGMLIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSE  86
            + G +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  87   VIPTGLPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRT  146
            + PTG +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  147  ILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREV  206
             L TGVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREV  193

Query  207  REFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTR  266
             EF++   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  267  FARALREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEP  326
            +ARALR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  327  VADEVKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKY  386
            +ADE++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++ 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  387  KANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  433
               +++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

621) Spith_0938 in NC_017583


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  235 bits (876),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 167/406 (42%), Positives = 278/406 (69%), Gaps = 3/406 (0%)

Query  24   VQGMRIEGQGPLAVVGELCRIHPP-DDPDAGIWAEVIGLKGSTVYLMGYQDPEGIQVGDV  82
            + G  IE++     +GELC I+   ++ +   +A+V+GL+     L    +++G+  + V
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  83   IEAMGEPLSIRVSEGLLGRVLDARGMPIDDKGPLPPGIRYP--VQGGPPHVLKRRRIEEQ  140
            + + G +LS +V+ ++LG VLD+ G  ++   P  + I     ++ +PP    R  + E 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  141  IATGIRALDGLLPIGKGQRvgvfsgsgvgksTLLGMVARNTNADVNVIALIGERGREVAE  200
            + TG+RA+DGLL  G GQR+G+F+++G GK+ L+ M+  +T+ADV VI+LIGERGREV+E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  201  FIEHDLGEEGLKRSVVVVSTSDTPAVARYRGAFVAVAIAEYFRDQGKDVMLLFDSVTRFA  260
            F++   + +   + V+V +TSD P+V R  +A +A ++AEYFRDQGK V+L++DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  261  RALREIGLALGESPATRGYPPSVFSTLPKLLERCGTSEKGTITGFFSVLVEGDDMDEPVS  320
            RALR+++LA GE PA RGYP+SVF  LP+LLER G++  G+IT+F++VL+E+++  +P++
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  321  DAVRGILDGHVVLSRRLAQRQHYPAIDVLSSVSRLAPKITTPPVREAARRVLRWLAAYQE  380
            D +R+ILDGH+ LSR+LA + HYPAIDVL SVSR+  ++TTP   E A  V + ++  +E
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  381  TEDLINVGAYARGSNPEVDKAIEKLPDINAFLRQEIEERAPLAETI  426
             + +I++G Y  G N + D+A++    ++A L Q + + +++ +T+
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

622) ACPL_7909 in NC_017803


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  235 bits (875),  Expect = 6e-63, Method: Compositional matrix adjust.
 Identities = 148/337 (44%), Positives = 231/337 (69%), Gaps = 5/337 (1%)

Query  85   STGGPLRIPVGPDLRGRILDGLGRPMD----GGPPLRGELVGIEQAPPSAMERQLVDRPM  140
            +TG +L   VG  + G +LD  G+ ++      +P+  E V I+ APPS   R  V  P+
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVREPL  136

Query  141  SLGVRVLDTLVPCGRGQRIGIFAGSGVGKSTLMSMITRGTSAELNVVALVGERGREVREF  200
              GVR +D L+ CG GQR+GIFA++G GK+ LM M+   T A++ V++L+GERGREV EF
Sbjct  137  ITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEF  196

Query  201  IEHDLGPEGLARSVVVIATSDTPPLVRLRAGSVATRIAEYYRDEGADVLLMMDSVTRAAM  260
            ++   +++   + V+V+ATSD P++ R  A+ +AT +AEY+RD+G  V+L +DS+TR A 
Sbjct  197  VDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYAR  256

Query  261  AQREVGLSVGEPPATRGYPPSVFAMLASLLERAGPGARGSITGLYTVLVEGDDHNEPIAD  320
            A R+V+L+ GE PA RGYP+SVF  L+ LLER+G+ + GSIT++YTVL+E++++ +P+AD
Sbjct  257  ALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMAD  316

Query  321  AARSILDGHIVLDRKLATAGHFPSIQALDSISRVANKITTREQRADATELRRLMAAHRDV  380
              RSILDGH+ L RKLA  GH+P+I+ L S+SRV  ++TT  +  +A+ +R+LM+   ++
Sbjct  317  EIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEEL  376

Query  381  RELVEIGAYVPGTNPEADRANAAWPRISAFLRQDIDE  417
            + ++++G Y PG N + DRA   +  + A L Q + +
Sbjct  377  QLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

623) EUBELI_00811 in NC_012778


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  235 bits (875),  Expect = 6e-63, Method: Compositional matrix adjust.
 Identities = 171/416 (42%), Positives = 284/416 (69%), Gaps = 6/416 (1%)

Query  26   KIVGLTIESVGPDAKLNDLCRIYSADNSQELYA--EVVGFNDSSVLLMPFDVVDGIGPGC  83
            KI G  IE+   D  + +LC I  + + +++ A  +VVG++    +L  ++  +G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  84   VVENMEKPLTVKVGDGILGHTLDGLGNPTD--GSELE-LTDEYPVEAAPPDPMDREIISQ  140
            V+    ++L+  VG ++LG  LD  G+  +   +E+  +++E  ++ APP    R  + +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  141  VLPLGVKAVDGLLTVGKGQRIGIFAGSGVGKSTLLGMFARNTKADINVIALIgergrevr  200
             L  GV+A+DGLLT G GQR+GIFA++G GK+ L+ M+  +T AD+ VI+LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  201  efverDLGPEGMARSVLVVATSDKPALIRNKAAKTATAIAEYFRDQGKDVLLMMDSLTRF  260
            EFV+   +++   + VLV ATSD P++ R +AA+ AT++AEYFRDQGK V+L +DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  261  SMAQREIGLASGEPPVTRGYPPSVYSEMPKLLERAGMSDKGSITGLYTVLVDGDDFNEPI  320
            + A R+++LASGE P  RGYP+SV+ ++P+LLER+G +  GSIT++YTVL+++++  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  321  TDTARSILDGHIVLSRKLGQKNHYPAIDVLQSISRCMSQIVDRQHKQMAGRMKNVMATYN  380
            +D  RSILDGH+ LSRKL+ + HYPAIDVL+S+SR  +Q+    H + A+ ++++M+  +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  381  EAEDLINIGAYKSGSNKNIDYAIYKIDTVNKFLMQQTDEKFDYDDEISQLSDIFAD  436
            E + +I++G Y++G N + D A+   D+++  L Q   +   +DD +S + + FAD
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM-NAFAD  429

624) fliI in NC_009434


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  235 bits (875),  Expect = 6e-63, Method: Compositional matrix adjust.
 Identities = 169/420 (41%), Positives = 277/420 (66%), Gaps = 16/420 (3%)

Query  40   RMVGLTLEAEGLRAAVGSRCLVINDDSYHPTEV--EAEVMGFSSGKLYLMPVGSLAGIAP  97
            ++ G  +EAE    A+G  C +    + H  +V   A+V+G+   +  L  +G+  G++ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRR--GWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS-  71

Query  98   GARVVPLVNTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMRAEDWVPMDGPVINPLK  151
              R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  
Sbjct  72   --RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-S  128

Query  152  RHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGE  211
            R  + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   TEAD++V+GLIGE
Sbjct  129  RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGE  188

Query  212  RGREVKEFIENILGEESIKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLM  271
            RGREV EF++ + + +   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++
Sbjct  189  RGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFI  248

Query  272  DSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPSLVERAGNAERGGGSITAFYTVLSE  331
            DS+TRYA+A R++ALA GE PA +GYP+SVF +LP L+ER+G +  + GSITAFYTVL E
Sbjct  249  DSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGAT--SEGSITAFYTVLLE  306

Query  332  GDDQQDPIADAARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVSAEHVRASQRF  391
            ++++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV ++ H   +   
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  392  KQLWSRYQQSRDLISVGAYVPGGDPETDMAIARQAEMVSYLRQGLDESEGLSQSAAQLAA  451
            ++L +R ++ + +I +G Y PG + + D A+  +  + + L Q + +  ++ ++ + + A
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

625) fliI in NC_017955


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (872),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 167/393 (43%), Positives = 272/393 (70%), Gaps = 7/393 (1%)

Query  41   AVGDLVEVSPG--QRPLLA--EVVAVHRDRLTCMPL-GDLSGIRSGTPVRPTGRPLQVPV  95
            A+G+L E+  G  Q+ ++A  +VV+++R+R   ++L G+  G+  +  + PTGR+L   V
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTV-LSLIGNAQGLSRDVVLYPTGRALSAWV  87

Query  96   GEAllgrvldglgrpldggpplgslvsYVDLTSETPNAL-TRARVSRPLATGVRALDTLV  154
            G ++LG VLD  G+ ++   P  + +S   +   +P +  +R  V  PL TGVRA+D L+
Sbjct  88   GYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  155  PVGRGQRLGIFAGSGVGKSTLLSQITRGTDADIRVIGLIGERGREVREFIEEDLGPEGLA  214
              G GQR+GIFA++G GK+ L+  +   T+AD+ VIGLIGERGREV EF++   +++   
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  215  QSVVVVATSDEPPLVRLKAAFVATRIAEAFRDQGRDVLLMMDSITRTAMAQREVGLSAGE  274
            + V+V ATSD P++ R +AA +AT +AE FRDQG+ V+L +DS+TR A A R+V+L++GE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  275  PPATRGYPPSVFAMLPKLLEKAGTSTAGSITGLYTVLVDGDDHNEPIADTARSILDGHVV  334
             PA RGYP+SVF  LP+LLE++G+++ GSIT++YTVL++++++ +P+AD  RSILDGH+ 
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  335  LTRKLATAGHFPAIDVLESISRVATAVVPGAQMTDARELRRMLGALRDVRELIEIGAYQT  394
            L+RKLA  GH+PAIDVL S+SRV   V   ++  +A  +R+++  L +++ +I++G Y+ 
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  395  GTDPLVDRARRLVPDIDAFLRQSTADSTPLPEA  427
            G +   DRA ++   + A L Q+ A+ +++ ++
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

626) fliI in NC_009656


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (872),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 168/405 (42%), Positives = 270/405 (67%), Gaps = 12/405 (2%)

Query  33   RMVGLTLEAEGLQAAVGSRCNVINESGYHPVQVEAEVMGFSGSKVYLMPVGSLAGIAPGA  92
            ++ G  +EAE  + A+G  C++        V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLPDTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMRAEDWVPMDGPTINPLKRH  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTRADIIVVGLIGERG  206
             + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   T AD++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF+D + + +   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TRYA+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASISRVMPQVVEPGHLRDAQRFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV  P H  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQSRDLISVGAYVAGGDAETDLAIARFPAMRQFLRQALDE  431
            L +R ++ + +I +G Y +G + + D A+    +++  L Q++ +
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

627) TK90_1161 in NC_013889


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (872),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 159/381 (42%), Positives = 251/381 (66%), Gaps = 4/381 (1%)

Query  69   ENGAAVPAEVVGFQNDRTFLMPEELASGLTPGARIEPLDIQREIPVGDALLGRVIDANGQ  128
            ++     A+VVG+Q +RT L     A GL+ +  + P +      VG ++LG V+D+ G+
Sbjct  42   QKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGK  101

Query  129  PLDGKGP--LRARDHSPLSGRPINPLQRAPVREPLDVGIRSINGLLSVGRGQRLGLFAGS  186
             ++   P      ++  +   P +   R  VREPL  G+R+I+GLL+ G GQR+G+FA++
Sbjct  102  IVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASA  161

Query  187  GVGKSVLLGMMTRNTSADVIVVGLIGERGREVNEFIHEILDEESRQRTVVVAVPADQSPL  246
            G GK++L+ M+  +T ADV+V+GLIGERGREV EF++ +   + +++ V+V   +D +++
Sbjct  162  GCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSV  221

Query  247  LRQHGAWVATTVAESFRDRGLNVLLLMDSLTRFAQGAREIAMAIGEPPASKGYAASVFAR  306
             R ++A +ATTVAE FRD+G  V+L++DS+TR+A++ R++A+A GE PA +GY+ASVF  
Sbjct  222  DRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDN  281

Query  307  LPQLVERAGNGDVGGGSITAFYTVLAEGDDQNDPIVDAARAILDGHVVLSREIAETGRYP  366
            LP+L+ER+G    + GSITAFYTVL E++++ DP+ D  R+ILDGH+ LSR +A  G+YP
Sbjct  282  LPRLLERPGAT--SEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYP  339

Query  367  AIDVSASVSRVMSALITPEHEQAARRFRDLASTYMRNRDLIAVGAYRRGADTHLDEAVAM  426
            AIDV  SVSRV + + TP H + A   R L +     + +I +G YR G + + D A+ M
Sbjct  340  AIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQM  399

Query  427  HERLEAYLGQGRDEAVGFDQA  447
            ++ L A L Q   +  +FD++
Sbjct  400  RDSLKAWLCQPVAQYSSFDDT  420

628) fliI in NC_016745


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (872),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 161/399 (41%), Positives = 265/399 (67%), Gaps = 8/399 (2%)

Query  41   AVGSQCKVQTQFGDMD----AEVVGFADDKLYLMPSESLKGVIPGARVTPAGEGTGVPVG  96
            A+G  C ++    + +    A+VVG+  ++  L    + +G+  +  + P+G + +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  97   MALLGRVIDGIGQPLDGLGPIHTATTADFVSRPINP--MARKPIEAPMDVGVRAINSVLT  154
             ++LG V+D  G+ ++ + P  ++ + + V     P   +R  +  P+  GVRAI+++LT
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  155  VGQGQRMGLFAGSGVGKSVLLGMMTRGARADVVVVGLIGERGREVKEFIDVILGDEGrar  214
             G GQRMG+FA++G GK++L+ M+   + ADV V+GLIGERGREV EF+D++ + + + +
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  215  avvvaapadaSPLMRLKGCETALTLAEYYRDQGLNVLLLMDSLTRYAQAQREIALAVGEP  274
             V+V A +D +++ R ++ + A T+AEY+RDQG  V+L++DS+TRYA+A R++ALA GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  275  PASKGYPPSVFAKLPALVERAGNGGEGQGSITAFFTVLTEGDDLQDPIADAARAILDGHI  334
            PA +GYP+SVF +LP L+ER+G  +E  GSITAF+TVL E+++  DP+AD  R+ILDGH+
Sbjct  269  PARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  335  VLSRQLADSGHYPAIDIEKSISRVMTAVTTPEHQQQARVLKQAYALYQQNHDLINLGAYK  394
             LSR+LA+ GHYPAID+ KS+SRV   VTTP H +QA  +++  +  ++ + +I+LG Y+
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  395  SGADPRLDMAITIRPRLDRFLTQTMTEVFDFESCLKELA  433
            +G +   D A+ +R  L   L Q +++   F+  L  + 
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

629) B595_0044 in NC_018619


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (873),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 173/403 (43%), Positives = 271/403 (68%), Gaps = 5/403 (1%)

Query  2    LIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSEVIPT  58
            +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    + PT
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  59   GMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRTILST  118
            G +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R  L T
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  119  GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFI  178
            GVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV EF+
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREVTEFV  197

Query  179  EGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARA  238
            +   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR+ARA
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  239  LREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADE  298
            LR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P+ADE
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  299  VKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANE  358
            ++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++    +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  359  MLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  401
            ++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

630) B598_0043 in NC_018620


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (873),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 173/403 (43%), Positives = 271/403 (68%), Gaps = 5/403 (1%)

Query  2    LIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSEVIPT  58
            +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    + PT
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  59   GMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRTILST  118
            G +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R  L T
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  119  GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFI  178
            GVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV EF+
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREVTEFV  197

Query  179  EGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARA  238
            +   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR+ARA
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  239  LREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADE  298
            LR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P+ADE
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  299  VKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANE  358
            ++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++    +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  359  MLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  401
            ++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

631) B599_0043 in NC_018627


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (873),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 173/403 (43%), Positives = 271/403 (68%), Gaps = 5/403 (1%)

Query  2    LIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSEVIPT  58
            +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    + PT
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  59   GMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRTILST  118
            G +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R  L T
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  119  GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFI  178
            GVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV EF+
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREVTEFV  197

Query  179  EGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARA  238
            +   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR+ARA
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  239  LREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADE  298
            LR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P+ADE
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  299  VKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANE  358
            ++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++    +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  359  MLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  401
            ++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

632) B603_0043 in NC_018624


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (873),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 173/403 (43%), Positives = 271/403 (68%), Gaps = 5/403 (1%)

Query  2    LIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSEVIPT  58
            +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    + PT
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  59   GMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRTILST  118
            G +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R  L T
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  119  GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFI  178
            GVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV EF+
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREVTEFV  197

Query  179  EGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARA  238
            +   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR+ARA
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  239  LREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADE  298
            LR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P+ADE
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  299  VKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANE  358
            ++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++    +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  359  MLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  401
            ++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

633) B601_0041 in NC_018622


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (873),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 173/403 (43%), Positives = 271/403 (68%), Gaps = 5/403 (1%)

Query  2    LIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSEVIPT  58
            +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    + PT
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  59   GMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRTILST  118
            G +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R  L T
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  119  GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFI  178
            GVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV EF+
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREVTEFV  197

Query  179  EGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARA  238
            +   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR+ARA
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  239  LREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADE  298
            LR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P+ADE
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  299  VKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANE  358
            ++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++    +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  359  MLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  401
            ++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

634) CPS0A_0042 in NC_017289


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (873),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 173/403 (43%), Positives = 271/403 (68%), Gaps = 5/403 (1%)

Query  2    LIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSEVIPT  58
            +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    + PT
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  59   GMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRTILST  118
            G +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R  L T
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  119  GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFI  178
            GVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV EF+
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREVTEFV  197

Query  179  EGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARA  238
            +   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR+ARA
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  239  LREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADE  298
            LR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P+ADE
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  299  VKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANE  358
            ++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++    +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  359  MLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  401
            ++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

635) CPS0B_0042 in NC_017292


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (873),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 173/403 (43%), Positives = 271/403 (68%), Gaps = 5/403 (1%)

Query  2    LIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSEVIPT  58
            +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    + PT
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  59   GMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRTILST  118
            G +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R  L T
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  119  GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFI  178
            GVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV EF+
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREVTEFV  197

Query  179  EGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARA  238
            +   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR+ARA
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  239  LREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADE  298
            LR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P+ADE
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  299  VKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANE  358
            ++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++    +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  359  MLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  401
            ++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

636) CPS0D_0040 in NC_017290


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (873),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 173/403 (43%), Positives = 271/403 (68%), Gaps = 5/403 (1%)

Query  2    LIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSEVIPT  58
            +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    + PT
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  59   GMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRTILST  118
            G +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R  L T
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  119  GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFI  178
            GVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV EF+
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREVTEFV  197

Query  179  EGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARA  238
            +   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR+ARA
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  239  LREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADE  298
            LR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P+ADE
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  299  VKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANE  358
            ++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++    +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  359  MLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  401
            ++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

637) CPSIT_0040 in NC_015470


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (873),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 173/403 (43%), Positives = 271/403 (68%), Gaps = 5/403 (1%)

Query  2    LIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSEVIPT  58
            +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    + PT
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  59   GMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRTILST  118
            G +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R  L T
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  119  GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFI  178
            GVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV EF+
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREVTEFV  197

Query  179  EGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARA  238
            +   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR+ARA
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  239  LREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADE  298
            LR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P+ADE
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  299  VKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANE  358
            ++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++    +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  359  MLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  401
            ++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

638) CPS0C_0041 in NC_017291


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (873),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 173/403 (43%), Positives = 271/403 (68%), Gaps = 5/403 (1%)

Query  2    LIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSEVIPT  58
            +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    + PT
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  59   GMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRTILST  118
            G +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R  L T
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  119  GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFI  178
            GVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV EF+
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREVTEFV  197

Query  179  EGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARA  238
            +   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR+ARA
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  239  LREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADE  298
            LR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P+ADE
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  299  VKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANE  358
            ++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++    +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  359  MLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  401
            ++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

639) B711_0045 in NC_018625


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (873),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 173/403 (43%), Positives = 271/403 (68%), Gaps = 5/403 (1%)

Query  2    LIKAVVPNVRVGEVCLVKR-YGMEPLVT--EVVGFTQNFAFLSPLGELTGVSPSSEVIPT  58
            +I A + +V +GE+C ++R      +V+  +VVG+ ++ + LS +G+  G+S    + PT
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  59   GMPLYIRAgngllgrvlnglgEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRTILST  118
            G +L  + G ++LG VL+  G  ++  +   +  ++E   +  APP    R  +R  L T
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVER-FTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  119  GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFI  178
            GVR IDG+LT + GQR+GIFA+AG GK+ L+ M+  +  EADV VI+LIGERGREV EF+
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLI-EQTEADVFVIGLIGERGREVTEFV  197

Query  179  EGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARA  238
            +   + +   + V+V +TSD +S  R NAA ++T++AEYFRDQGK VVL +DS+TR+ARA
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  239  LREVGLAAGEPPARGGYTPSVFSTLPRLLERSGASDKGTITAFYTVLVAGDDMNEPVADE  298
            LR+V+LA+GE PAR GY +SVF  LPRLLER+GA+  G+ITAFYTVL+ +++  +P+ADE
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  299  VKSILDGHVVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANE  358
            ++SILDGH+ LS  LA   HYPAIDVL S+SR++  +    +    +  R ++++    +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  359  MLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEA  401
            ++I +GEYR G + + D A++  D L+  L Q + + ++++++
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

640) fliI in NC_004578


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (874),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 164/396 (42%), Positives = 263/396 (67%), Gaps = 14/396 (3%)

Query  33   RMVGLTLEAEGMRAAMGSRCMVINDDSHHPVEVEAEVMGFSGGKVFLMPVGSVAGIAPGA  92
            ++ G  +EAE    A+G  C +  +  +  V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLADTGR-LP--MGMSMLGRVLDGAGRPLD----GRSPIKAEDWVPMDGPTINPLKR  145
            R V L  TGR L+  +G S+LG VLD +G+ ++      +PI  E  + +  P+  +  R
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--R  129

Query  146  DPISQPLDVGIRCINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGER  205
              + +PL  G+R I+GLLT G GQR+G+FA++G GK++L+ M+   TEAD++V+GLIGER
Sbjct  130  VGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGER  189

Query  206  GREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMD  265
            GREV EF++ + + +   + V+V + +D +++ R  AA   T +AEYFRD+GK V+L++D
Sbjct  190  GREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFID  249

Query  266  SLTRFAQAQREIALAIGEPPATKGYPPSVFARLPKLVERAGNAEKGGGSITAFYTVLSEG  325
            S+TR+A+A R++ALA GE PA +GYP+SVF  LP+L+ER+G +  + GSITAFYTVL E+
Sbjct  250  SMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGAT--SEGSITAFYTVLLES  307

Query  326  DDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPAVVSPEHMARAQHFK  385
            +++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV   V +P H  +A   +
Sbjct  308  EEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVR  367

Query  386  QLWSRYQQTRDLISVGAYVAGGDRETDMAIALHPVL  421
            +L +R ++ + +I +G Y +G + + D A+ ++  L
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSL  403

641) fliI in NC_014355


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (874),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 171/422 (41%), Positives = 281/422 (67%), Gaps = 23/422 (5%)

Query  24   GIVIEASGPFTSVGEVCEITREGGHGAVMA--EVVGFREDRVLLMPLGEMQGIGPGSRVV  81
            G +IEA     ++GE+CEI R   +  V+A  +VVG++ +R +L  +G+ QG++ +  + 
Sbjct  18   GPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLY  77

Query  82   MKGHVASVPVGPQMLG-------RIFdglghpldglpplRT-DVQVPLYAPPLNPLHRAR  133
              G+  S  VG  +LG       +I + +   +  ++  R  DV  P YA+      R  
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS------RVG  131

Query  134  ITQPVDLGIRAINALLTCGQGQKIGVFAGSGVGKSVLLGMISRYTQADVRVIALVGERGR  193
            + +P+  G+RAI++LLTCG GQ++G+FA++G GK++L+ M+   T+ADV VI+L+GERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  194  EVKEFLERDLTPEARARSIVVVATSDQPPLVRIRGALVATAIAEYFRDCGKHVLLMMDSL  253
            EV EF++   +++ + + ++V ATSD P++ R  +A +AT++AEYFRD GK+V+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  254  SRLAYSQREVGLAIGEPPTTKGYTPSVFAVLPKLLERVGPAQSGGSITGLYTVLVDGDDL  313
            +R A + R+V+LA GE P+ +GY +SVF  LP+LLER G++ S GSIT++YTVL+++++ 
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGAT-SEGSITAFYTVLLESEEE  310

Query  314  NDPVADAVRSILDGHIVLSRELAARNHFPAIDILQSTSRVMRDIVTPAHYAAGRLVLERT  373
             DP+AD +RSILDGH+ LSR LA++ H+PAID+L+S SRV  ++ TP+H   +  V    
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV---R  367

Query  374  ALYRRSEDL---ITLGAYKPGTSKDLDKAVSAHEGITAFLRQETKQSVGLSQSIDALLAL  430
             L  R E+L   I LG Y+PG + D D+A+  ++++ A L Q   Q  ++ +++ ++ A+
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

Query  431  AG  432
            A+
Sbjct  428  AD  429

642) STHERM_c09130 in NC_014484


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (874),  Expect = 7e-63, Method: Compositional matrix adjust.
 Identities = 166/406 (41%), Positives = 278/406 (69%), Gaps = 3/406 (0%)

Query  24   VQGMRIEGQGPLAVVGELCRIHPP-DDPDAGIWAEVIGLKGSTVYLMGYRDPEGIQVGDV  82
            + G  IE++     +GELC I+   ++ +   +A+V+GL+     L    +++G+  + V
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  83   IEAMGEPLSIRVSEGLLGRVLDARGMPIDDKGPLPPGIRYP--VQGGPPHVLKRRRIEEQ  140
            + + G +LS +V+ ++LG VLD+ G  ++   P  + I     ++ +PP    R  + E 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  141  IATGIRALDGLLPIGKGQRvgvfsgsgvgksTLLGMVARNTNADVNVIALIGERGREVAE  200
            + TG+RA+DGLL  G GQR+G+F+++G GK+ L+ M+  +T+ADV VI+LIGERGREV+E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  201  FIEHDLGEEGLKRSVVVVSTSDTPAVARYRGAFVAVAIAEYFRDQGKDVMLLFDSITRFA  260
            F++   + +   + V+V +TSD P+V R  +A +A ++AEYFRDQGK V+L++DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  261  RALREMGLALGESPATRGYPPSVFSTLPKLLERCGTSEKGTITGFFSVLVEGDDMDEPVS  320
            RALR+++LA GE PA RGYP+SVF  LP+LLER G++  G+IT+F++VL+E+++  +P++
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  321  DAVRGILDGHVVLSRRLAQRQHYPAIDVLSSVSRLAPKITTPPVRDAARRVMRWLAAYQE  380
            D +R+ILDGH+ LSR+LA + HYPAIDVL SVSR+  ++TTP   + A  V + ++  +E
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  381  TEDLINVGAYARGSNPEVDKAIEKLPDINAFLRQEIEERAPLAETI  426
             + +I++G Y  G N + D+A++    ++A L Q + + +++ +T+
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

643) fliI in NC_014323


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (874),  Expect = 8e-63, Method: Compositional matrix adjust.
 Identities = 149/345 (44%), Positives = 240/345 (70%), Gaps = 8/345 (2%)

Query  126  VGEELLGRVLDGAGRPLD----NLGPLHTERSAPLAVRAANPLGRAPIRDILDTGIRAIN  181
            VG  +LG VLD +G+ ++    +++P+  ER   + V +++  +R  +R+ L TG+RAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERV--IDVAPPSYASRVGVREPLITGVRAID  144

Query  182  SMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTSADVIVVGLIGERGREVKEFIEQILGAE  241
            ++LT G GQRMG+FA++G GK++L+ M+   T ADV+V+GLIGERGREV EF++ + +++
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  242  GLARSVVVAAPADTPPLMRLQGAAYCTSIAEYFRDQGKDVLLIMDSLTRYAMAQREIALA  301
               + V+V A +D P++ R ++A   T++AEYFRDQGK V+L++DS+TRYA A R++ALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  302  IGEPPATKGYPPSVFAKLPALVERAGNGDEGGGSITAFYTVLTEGDDQQDPIADAARAIL  361
             GE PA +GYP+SVF +LP L+ER+G   E  GSITAFYTVL E++++ DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSIL  322

Query  362  DGHIVLNRQLAEAGHYPAIDIEQSISRAMHSITDAEHQRSSRHLKQLYSRFQRNRDLISV  421
            DGH+ L+R+LA  GHYPAID+ +S+SR    +T + H   +  +++L +R++  + +I +
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  422  GAYAAGSDPILDEAIALLPRMEAFLQQGIHEQADVSESLRQLTAL  466
            G Y +G +   D A+ +   + A L Q + + +   ++L  + A+
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

644) Q7A_2368 in NC_017857


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (874),  Expect = 8e-63, Method: Compositional matrix adjust.
 Identities = 165/405 (41%), Positives = 269/405 (67%), Gaps = 9/405 (2%)

Query  52   QASIGSRCEIHAPGREPVE----AEVVGFHDETLYLMPTGNIRGLVPNARVRPIRSDSQV  107
            + +IG  CEI+  G++  +    A+VVG++ E   L   GN +GL  +  + P       
Sbjct  27   DVAIGELCEIR-RGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSA  85

Query  108  PVGNALLGRIVDGAGKPLDGRGP--LNVNDKVPLHGKTVNPLSRAPVRQHLDVGVRAINT  165
             VG ++LG ++D +GK ++   P    +++   ++    +  SR  VR+ L  GVRAI+ 
Sbjct  86   WVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  166  LMTVGRGQRMGLFAGSGVGKSVLLGMMTRFTEADVIVVGLIGERGREVKEFIEDILGEEG  225
            L+T G GQRMG+FA++G GK++L+ M+   TEADV+V+GLIGERGREV EF++ + + + 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  226  LKRAVVVASPADHSPLMRLHGAMLATSIAEYFRDQGKQVLLLMDSLTRFAQAQREIALAV  285
              + V+V + +D +++ R ++A LAT++AEYFRDQGK+V+L++DS+TR+A+A R++ALA 
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  286  GEPPATKGYPPSVFSLLPQLVERAGSGEVGGGAITAIYTVLTEGDDQQDPVADAARAILD  345
            GE PA +GYP+SVF  LP+L+ER+G+   + G+ITA+YTVL E++++ DP+AD  R+ILD
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGAT--SEGSITAFYTVLLESEEEADPMADEIRSILD  323

Query  346  GHIVLSRQLAEAGHYPAIDVEASISRVMPQVVDAKQLQLAQQFKRIYSTYRQNQDLITIG  405
            GH+ LSR+LA  GHYPAIDV  S+SRV  QV  + + + A   +++ +   + Q +I +G
Sbjct  324  GHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLG  383

Query  406  AYQAGSDQQIDEAINRFPALSAMLKQDMHVAHDWNSSLQSLQKLA  450
             Y++G + + D A++   +L A L Q +      + +L +++ +A
Sbjct  384  EYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFA  428

645) Dsui_1753 in NC_016616


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (873),  Expect = 9e-63, Method: Compositional matrix adjust.
 Identities = 150/340 (45%), Positives = 241/340 (71%), Gaps = 8/340 (2%)

Query  126  VGMGLLGRVVDGAGRPLD----GLGPLHAEALRPLHSRPVNPMSRAPISRTLDVGVRAIN  181
            VG ++LG V+D +G+ ++     ++P+  E  R ++  P +  SR  +   L  GVRAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEE--RVIDVAPPSYASRVGVREPLITGVRAID  144

Query  182  GLLTVGQGQRMGLFAGSGVGKSVLLGMMARYTEAEIIVVGLIGERGREVKEFIEQILGEE  241
            GLLT G GQRMG+FA++G GK++L+ M+   TEA+++V+GLIGERGREV EF++ + + +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  242  GRRRSAVIAAPADTSPLMRLQGAAYATSVAEYFRDQGKQVLLIMDSLTRYAMAQREIALA  301
             + +  ++ A +D +++ R ++A  AT+VAEYFRDQGK+V+L++DS+TRYA A R++ALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  302  IGEPPVTRGYPPSVFARLPQLVERAGNGPDGGGSITAFYTVLAEGDDQQDPIADSARAIL  361
             GE P  RGYP+SVF  LP+L+ER+G  ++  GSITAFYTVL E++++ DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSIL  322

Query  362  DGHIVLNRQLADAGHYPAIDIEQSISRAMVNLITPAQFDLVRRFKQLYSRYQRSRDLIAV  421
            DGH+ L+R+LA+ GHYPAID+ +S+SR   ++ TP++ +     ++L +R +  + +I +
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  422  GAYVAGSDPMVDQAIQLMPLLEKFLQQDLSDRSSIEATLA  461
            G Y +G +   D+A+Q+   L   L Q +++ SS++ TL+
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

646) fliI in NC_007974


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (873),  Expect = 9e-63, Method: Compositional matrix adjust.
 Identities = 149/345 (44%), Positives = 238/345 (69%), Gaps = 8/345 (2%)

Query  139  VGDGLLGRVLDAAGRPLD----GLGPITAASEVPLAGTQINPLTRAPIETVLDTGVRAIN  194
            VG ++LG VLD++G+ ++     ++PI+    + +A       +R  +   L TGVRAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA--SRVGVREPLITGVRAID  144

Query  195  GMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTNADVIVVGLIGERGREVKEFIENILGEE  254
            G+LT G GQRMG+FA++G GK++L+ M+   T+ADV+V+GLIGERGREV EF++ + + +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  255  GRKRSVVVAAPADTSPLLRMQGAAYATRLAEYFRDKGQHVLLIMDSLTRYAMAQREIALA  314
             + + V+V A +D +++ R ++A  AT +AEYFRD+G++V+L++DS+TRYA A R++ALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  315  IGEPPATKGYPPSVFAKLPTLVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAIL  374
             GE PA +GYP+SVF +LP L+ER G  +E  GSITAFYTVL E++++ DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSIL  322

Query  375  DGHIVLSRSLAEAGHYPAIDVEASISRAMTALIDAPQFASVRRFKQLMSRYQRNRDLISV  434
            DGH+ LSR LA  GHYPAIDV  S+SR    +  + +       ++LM+R +  + +I +
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  435  GAYVPGSDPELDLAIRMYPRMEAFLQQDIHERAGYDASIAQLHDL  479
            G Y PG + + D A++M   + A L Q + + +++D +++ ++ +
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

647) Btus_1497 in NC_014098


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  234 bits (873),  Expect = 9e-63, Method: Compositional matrix adjust.
 Identities = 171/404 (43%), Positives = 270/404 (67%), Gaps = 9/404 (2%)

Query  43   VGDLCSI-----ETDAGPRFAEVVGFRNRRLILMPFSDLDRIHNGAVVKVVSEGLRVPTG  97
            +G+LC I     + +  +R A+VVG++  R +L  +++ + +  + V+   + +L    G
Sbjct  30   IGELCEIRRGWHQKQVVAR-AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  98   PGILGRVVDGLGRPIDGLGPVAGEFQDP--IEQpppppMARTPVNQPLSVGVRAIDGLLT  155
             ++LG V+D  G+ ++ + P  + + +   I+ +PP+  +R  V +PL  GVRAIDGLLT
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  156  VGQGQRIGIFAGSGVGKSTLLGMIARYTEADVTVIGLIGERGREVQDFIARELDEEGRKR  215
             G GQR+GIFA++G GK+ L+ M+   TEADV VIGLIGERGREV +F+      + + +
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  216  AVVVAATSDQPPLMRIKGALTATAMAERFRRQGRRVLLLMDSVTRFAMACREVGLAAGEP  275
             V+V ATSD P++ R ++A  AT++AE FR QG+RV+L++DS+TR+A A R+V+LA+GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  276  PTARGYTPSVFAALPKLLERTGTARTGSITAFYTVLVEGDDFNEPIADAVRGILDGHIVL  335
            P+ RGY +SVF  LP+LLER G++  GSITAFYTVL+E+++  +P+AD +R+ILDGH+ L
Sbjct  269  PARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYL  328

Query  336  SRKIAQQGLYPAIDVTASTSRLMNQVAETAHVraaarfkallaayeeaedlIQIGAYREG  395
            SRK+A QG YPAIDV  S SR+  QV+  +H   A+  + L++  EE + +I++G YR G
Sbjct  329  SRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPG  388

Query  396  TRLEVDTALRLRPRMWAYLAQNRDVRSDMGEAVRQLMEMFNEEG  439
              ++ D A+++R  + A L Q     S  ++++   M+ F ++ 
Sbjct  389  ENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSG-MNAFADQN  431

648) fliI in NC_007005


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  233 bits (870),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 164/396 (42%), Positives = 263/396 (67%), Gaps = 14/396 (3%)

Query  33   RMVGLTLEAEGLRAAMGSRCVVINDDSHHPVEVEAEVMGFSGGKVFLMPVGSVAGIAPGA  92
            ++ G  +EAE    A+G  C +  +  +  V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLADTGR-LP--MGMSMLGRVLDGAGRPLD----GRSPIKAEDWVPMDGPTINPLKR  145
            R V L  TGR L+  +G S+LG VLD +G+ ++      +PI  E  + +  P+  +  R
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--R  129

Query  146  DPISQPLDVGIRCINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGER  205
              + +PL  G+R I+GLLT G GQR+G+FA++G GK++L+ M+   TEAD++V+GLIGER
Sbjct  130  VGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGER  189

Query  206  GREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMD  265
            GREV EF++ + + +   + V+V + +D +++ R  AA   T +AEYFRD+GK V+L++D
Sbjct  190  GREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFID  249

Query  266  SLTRFAQAQREIALAIGEPPATKGYPPSVFARLPKLVERAGNAEKGGGSITAFYTVLSEG  325
            S+TR+A+A R++ALA GE PA +GYP+SVF  LP+L+ER+G +  + GSITAFYTVL E+
Sbjct  250  SMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGAT--SEGSITAFYTVLLES  307

Query  326  DDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPAVVSPEHMARAQHFK  385
            +++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV   V +P H  +A   +
Sbjct  308  EEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVR  367

Query  386  QLWSRYQQTRDLISVGAYVAGGDRETDMAIALHPVL  421
            +L +R ++ + +I +G Y +G + + D A+ ++  L
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSL  403

649) Ssed_0074 in NC_009831


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  233 bits (870),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 161/386 (42%), Positives = 261/386 (68%), Gaps = 15/386 (3%)

Query  32   RVNGLLLEAVGCQLGMGDRCHIECRDGR-----LIEAEVVGFNRETLCLMPIEHTSGLMP  86
            ++ G ++EA   ++++G+ C+I  R G+     +  A+VVG++RE   L  I ++ GL  
Sbjct  15   KITGPIIEAELRDVAIGELCEI--RRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSR  72

Query  87   GSRVMPLAEQVKIPVGTSLLGRVLDGLGQPLD----ALGPLKNLQSVPLSNNTTNPLLRK  142
            +  + P +  +   VG S+LG VLD  G+ ++     ++P+ + + + ++  +  +  R 
Sbjct  73   DVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RV  130

Query  143  PIREPLDVGIRAINALLPIGRGQRLGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERG  202
             +REPL  G+RAI++LL  G GQR+G+FA++G GK++L+ M+   TEADV V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  203  REVREFIEESLGEEGRERAVVIAAPADTTPLMRMRAMRLCHHVAAAFRDQGKQVLLLVDS  262
            REV EF++   + + +E+ V++ A +D  ++ R  A +L   VA  FRDQGK+V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  263  LTRYAQAQREIALSLGEPPATKGYPPSAFAQLPSLVELAGNGQDPVGTLTAFYTVLTEGD  322
            +TRYA+A R++AL+ GE PA +GYP+S F +LP L+E +G   +  G++TAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESE  308

Query  323  DQQDPIADAARAILDGHLVLSRKLAEQGHFPAIDISASVSRLATQVADQTQLSQGHHFRH  382
            ++ DP+AD  R+ILDGHL LSRKLA QGH+PAID+  SVSR+  QV+  T+  Q+   R 
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  383  LNSRYNEVRELLPLGGYQAGHDPQMD  408
            L +R +E++ ++ LG Y++G++ + D
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDND  394

650) MDS_1852 in NC_015410


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  233 bits (870),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 164/404 (41%), Positives = 269/404 (67%), Gaps = 10/404 (2%)

Query  33   RMVGLTLEAEGLRAAVGSRCLVINDDSYHPVQVEAEVMGFSAGKIYLMPVGSLAGIAPGA  92
            ++ G  +EAE    A+G  C +  +     V   A+V+G+   +  L  +G+  G++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD-  73

Query  93   RVVPLPDAGRLP--MGMTMLGRVLDGAGRALD---GKGGMKAEDWVPMDGPSINPLNRDP  147
             VV  P +  L+  +G ++LG VLD +G+ ++      +  +E++V   +P+  + +R  
Sbjct  74   -VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVG  131

Query  148  ISQPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAEIIVVGLIGERGR  207
            + +PL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   TEA+++V+GLIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  208  EVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDSL  267
            EV EF+D + + +   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  268  TRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGDD  327
            TRYA+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E+++
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEE  309

Query  328  QQDPIADAARGVLDGHFVLSRRLAEEGHYPAVDIESSISRVMPQVVPPEQLKQAQRFKQL  387
            + DP+AD  R++LDGH+ LSR+LA +GHYPA+D+  S+SRV  QV  P +  QA   ++L
Sbjct  310  EADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKL  369

Query  388  WSRYQQSRDLISVGAYVPGGDADTDLAIARQPIMAQYLRQGLDE  431
             +R ++ + +I +G Y PG + D D A+  +  +   L Q + +
Sbjct  370  MTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

651) Dd1591_1889 in NC_012912


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  233 bits (868),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 178/409 (44%), Positives = 280/409 (69%), Gaps = 13/409 (3%)

Query  54   IGDLCLVERN-DSSQVLA--EIVGFSPSNTFLSALGALDGIAQGAVVTPLYQPHCVQVSD  110
            IG+LC + R  +  QV+A  ++VG+    T LS +G  +G++++ V+ P  ++    V+ 
Sbjct  30   IGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGY  89

Query  111  ALFGSVLDGFGRPLEEGGHSAFVEPGDLNANPMPVIGDAPPP-TERPRIADPLPTGMRAI  169
            +++G+VLD  G+ +E      F  P     +   VI+ APP+ + R  + +PL TG+RAI
Sbjct  90   SVLGAVLDPTGKIVER-----FT-PEVAPISEERVIDVAPPSYASRVGVREPLITGVRAI  143

Query  170  DGLLTIGCGQRVGVFAGAGCGKTTLLAELARNTPCDAIVFGLIGERGRELREFLDHELDE  229
            DGLLT G GQR+G+FA+AGCGKT L+  L  +T  D +V+GLIGERGRE+ EF+D     
Sbjct  144  DGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRAS  203

Query  230  QLRSRTVLVCSTSDRSSMeraraaftataiaeafraaGKQVLLIIDSLTRFARAQREIGL  289
            + + + VLV +TSD +S++R  AA  AT++AE FR  GK+V+L+IDS+TR+ARA R+++L
Sbjct  204  HKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVAL  263

Query  290  ALGEPQGRGGLPPSVYTLLPRLVERAGQTRQGAITALYSVLIEQDSMNDPVADEVRSLID  349
            A GE  +R G P+SV+  LPRL+ER+G T +G+ITA+Y+VL+E +   DP+ADE+RS++D
Sbjct  264  ASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILD  323

Query  350  GHIVLSRRLAERNHYPAIDVLMSLSRTMSNVVEREHTRNANAVRRLMAAYKQVEMLIRLG  409
            GH+ LSR+LA + HYPAIDVL S+SR  ++V    H+ +A+AVR+LM+   +++++I LG
Sbjct  324  GHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLG  383

Query  410  EYQPGHDALTDAAVSANDDINRFLQQAMREPQSFEFIQSQLAEVSQYAN  458
            EY+PG++   D A+   D ++  L Q++ +  SF+     L+ ++ +A+
Sbjct  384  EYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD---DTLSGMNAFAD  429

652) fliI in NC_005773


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  233 bits (870),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 164/396 (42%), Positives = 263/396 (67%), Gaps = 14/396 (3%)

Query  33   RMVGLTLEAEGLRAAMGSRCVVINDDSHHPVEVEAEVMGFSGGKVFLMPVGSVAGIAPGA  92
            ++ G  +EAE    A+G  C +  +  +  V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLADTGR-LP--MGMSMLGRVLDGAGRPLD----GRSPIKAEDWVPMDGPTINPLKR  145
            R V L  TGR L+  +G S+LG VLD +G+ ++      +PI  E  + +  P+  +  R
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--R  129

Query  146  DPISQPLDVGIRCINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGER  205
              + +PL  G+R I+GLLT G GQR+G+FA++G GK++L+ M+   TEAD++V+GLIGER
Sbjct  130  VGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGER  189

Query  206  GREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMD  265
            GREV EF++ + + +   + V+V + +D +++ R  AA   T +AEYFRD+GK V+L++D
Sbjct  190  GREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFID  249

Query  266  SLTRFAQAQREIALAIGEPPATKGYPPSVFARLPKLVERAGNAEAGGGSITAFYTVLSEG  325
            S+TR+A+A R++ALA GE PA +GYP+SVF  LP+L+ER+G   ++ GSITAFYTVL E+
Sbjct  250  SMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLES  307

Query  326  DDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPAVVSPEHMARAQHFK  385
            +++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV   V +P H  +A   +
Sbjct  308  EEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVR  367

Query  386  QLWSRYQQTRDLISVGAYVAGGDRETDMAIALHPVL  421
            +L +R ++ + +I +G Y +G + + D A+ ++  L
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSL  403

653) Nmul_A1348 in NC_007614


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  232 bits (865),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 151/345 (44%), Positives = 240/345 (70%), Gaps = 8/345 (2%)

Query  124  VGEALLGRVVDGTGRPLD----NLGPLEVERSASAAGSPINPLDREPISEVLDVGVRAIN  179
            VG ++LG V+D TG+ ++    +++P+  ER    A ++  +  R  + E L  GVRAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAID  144

Query  180  ALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTSADIIVVGLIGERGREVKDFIEQILGAE  239
            +LLT G GQRMG+FA++G GK++L+ M+   T AD++V+GLIGERGREV +F++ + +++
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  240  GLARSVVVAAPADTWPLMRLQGASYATSVAEYFRDQGKNVLLIMDSLTRYAMAQREIALA  299
               + V+V A +D  ++ R ++A  AT+VAEYFRDQGK V+L++DS+TRYA A R++ALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  300  IGEPPATKGYPPSVFAKLPQLVERAGNGVKGSGSITAFYTVLAEGDDQQDPIADAARAIL  359
             GE PA +GYP+SVF +LP+L+ER+G    + GSITAFYTVL E++++ DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGAT--SEGSITAFYTVLLESEEEADPMADEIRSIL  322

Query  360  DGHIVLSRQLAESGHYPAIDIEASISRAMTSLISPEYFEQVRNFKQLFSRYQRSRDLISV  419
            DGH+ LSR+LA  GHYPAID+  S+SR    + +P   EQ    ++L +R +  + +I +
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  420  GAYSPGNDRLLDRAIALYPKLEHFLQQTMVERAGYEESTRSLEAL  464
            G Y PG++   DRA+ +   L   L Q + + ++++++  +++A+
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

654) fliI in NC_016041


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  232 bits (865),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 167/407 (42%), Positives = 268/407 (66%), Gaps = 12/407 (2%)

Query  41   QVPVGGRCLVQTSRGQIE----AEVVGFSGDVTYLMPTESVKGIVPGSRVQPLSHDNGLA  96
            +V++G  C ++ ++ Q +    A+VVG+  + T L    + +G+  +  + P ++  +  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  97   VGDELLGRVIDANGEPLD----GKGPIKCKQTASLTPPPINPLTRKPVNQPLDVGVRAIN  152
            VG  +LG V+D+ G  ++      +PI   +   ++PP+    +R  V +PL  GVRAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA--SRVGVREPLITGVRAID  144

Query  153  TVLTVGKGQRMGLFAGSGVGKSVLMGMMTRGTTADVVVVGLIGERGREVKEFIQDILTae  212
             +LT G GQRMG+FA++G GK++LM M+   T ADV V+GLIGERGREV EF++ + +++
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  213  erekavvvaapaDTSPLMRLKGCEAAVTIAEYFRDQGKDVLLLVDSLTRYAMAQREIALA  272
             +EK V+V A +D +++ R ++ + A T+AEYFRDQGK V+L++DS+TRYA A R++ALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  273  IGEPPATKGYPPSVFAKLPALVERAGNGTELQGSITAFYTVLTEGDDLQDPIADSARAIL  332
             GE PA +GYP+SVF +LP L+ER+G  +E  GSITAFYTVL E+++  DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSIL  322

Query  333  DGHIVLSRRLAESGHYPAIDIESSISRVMPQVVNEEHVLQARNIKQVYSTYQQNKDLISI  392
            DGH+ LSR+LA  GHYPAID+  S+SRV  QV    H  QA  ++++ +  ++ + +I +
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  393  GAYARGTDNRIDLSIAAEPAINAFLQQTMGQVISFEKCVESMGTLNG  439
            G Y  G +   D ++    +++A L Q ++Q  SF+  + +M ++ +
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

655) MXAN_2442 in NC_008095


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  232 bits (864),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 171/420 (41%), Positives = 275/420 (66%), Gaps = 14/420 (3%)

Query  27   LTGLIIKASVPNVRVGELVLIK---SRNRGAVKAEVVGFQGDEVMLMPLGELHGIGPDSE  83
            +TG II A + +V +GEL  I+    +++   +A+VVG+Q +  +L  +G+ +G++ D  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  84   VIPTGKPLSIKCGEALLGRVLNGIGEPMD-----GHPLPEEGLIDWSVDRDCPDPF-TRQ  137
            + PTG++LS   G ++LG VL+  G  ++       P++EE +ID       P ++ +R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVID-----VAPPSYASRV  130

Query  138  RIERPLPLGVRCIDGLLTVGEGQRVGLFAGSGVGKSTLMGQIARNTKADLCVVALIGERG  197
             +  PL  GVR IDGLLT G GQR+G+FA++G GK+ LM  +  +T AD+ V++LIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  198  REVREFIEDAMGEEGMKRSVLVCATSDQPSLVRLRAAYVATAIAEYFRERGGNVLFMLDT  257
            REV EF++   + +   + VLV ATSD PS+ R  AA +AT++AEYFR++G  V++ +D+
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  258  VTRLARAQREIGLAVGEPPARQGYPPSVFSMLPRILERTGNSEKGKCTAIYTCLVAGGDM  317
            +TR ARA R+++LA GE PAR+GYP+SVF  LPR+LER G +  G  TA+YT L+ + + 
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  318  EEPIADEVRGILDGHFILNRALGERNQWPAMDVLASLSRVMSGIVSKDHKKAAGRLRELL  377
             +P+ADE+R+ILDGH+ L+R L+ + + PA+DVL S+SRV + + +  H   A+ +R L+
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  378  STYEKQRDLILLGAYQYGTDPRTDQAIDKYDAIIDFLKQDTHSNSGFEETVEQLIALFDE  437
            +  E  + +I LG Y+ G +   D+A++  D++   L Q     S+F++T+  + A+ D+
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQ  430

656) fliI in NC_008702


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  232 bits (864),  Expect = 5e-62, Method: Compositional matrix adjust.
 Identities = 149/337 (45%), Positives = 236/337 (71%), Gaps = 4/337 (1%)

Query  122  VGDAMLGRVVDGAGRPLDGLGP--LNTVETRSLQGRPVNPLNRAPIAQPLDVGIRAINSL  179
            VG ++LG V+D +G+ ++ + P      E R ++  P +  +R  + +PL  G+RAI++L
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  180  LTVGRGQRLGLFAGSGVGKSVLIGMMARFTSADIIVVGLIGERGREVKEFIEHNLGAEGR  239
            LT G GQR+G+FA++G GK++L+ M+   T AD++V+GLIGERGREV EF++   +++ +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  240  KRSVVVAAPADNSPLMRLQGAAYATTIAEYFRDQGKQVLLIMDSLTRYAMAQREIALAIG  299
             + V+V A +D +++ R ++A  ATT+AEYFRDQGK+V+L++DS+TRYA A R++ALA G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  300  EPPVTRGYPPSVFARLPALVERAGNGPDGGGSITAFYTVLAEGDDQQDPIADSARAILDG  359
            E P  RGYP+SVF  LP L+ER+G  ++  GSITAFYTVL E++++ DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  360  HFVLSRNLADQGHYPAIDIEQSISRAMHTLVDNAHFDLVRRFKQLFSRYQRSRDLIAVGA  419
            H+ LSR+LA+QGHYPAID+ +S+SR    +   +H +     ++L +R +  + +I +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  420  YQPGAEPLLDMAVALYPRLEAFLQQRVDEREPYDGAV  456
            Y+PG +   D A+ +   L A L Q V +  ++D+++
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTL  421

657) fliI in NC_011753


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  231 bits (863),  Expect = 5e-62, Method: Compositional matrix adjust.
 Identities = 164/408 (41%), Positives = 262/408 (65%), Gaps = 12/408 (2%)

Query  28   RVVGLTLEATGCKAPIGSLCLVETMSGQME----AEVVGFSGDNLFLMPSEQITGILPGA  83
            ++ G  +EA     +IG LC +     Q +    A+VVG+  +   L    +  G+  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  84   RVTPMTSESGIPVGMELLGRVIDGVGNPLD----GLGPIYTEQRASFNAEPINPLARKPI  139
             + P     +  VG  +LG V+D  G+ ++     ++PI +E+R  ++  P +  +R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPI-SEERV-IDVAPPSYASRVGV  132

Query  140  SEPLDVGLKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGRE  199
             EPL  G++AI+GLLT G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  200  VKEFIEEILGEDGRKRSVVVAAPADSSPLMRLKGCQTALAVAEYFRDQGLDVLLLMDSLT  259
            V EF++ + + + + + V+V A +D +++ R ++ Q A +VAEYFRDQG  V+L++DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  260  RFAQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGNDEQGSITAFFTVLTEGDDL  319
            R+A+A R++AL+ GE PA +GYP+SVF +LP L+ER+G  ++  GSITAF+TVL E+++ 
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEE  310

Query  320  QDPIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVL  379
             DP+AD  R+ILDGH+ LSR +A+ GHYPAIDV KSVSRV  Q+TT  H   + AVR+++
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  380  SICRKNQDLVSIGAYKPGTDPAIDSAFTLKPRLDEYLQQKMKETVPYD  427
            +     Q ++ +G Y+PG +   D A  ++  L   L Q + +  ++D
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

658) fliI in NC_017093


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  231 bits (862),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 146/334 (44%), Positives = 227/334 (68%), Gaps = 3/334 (0%)

Query  94   VGPDLRGRILDGLGRPMDGGPPLRGTMVE---IDTAPPAAMDRQLVDKPMSLGVRVLDTL  150
            VG  + G +LD  G+ ++   P  + + E   ID APP+   R  V  P+  GVR +D L
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  151  VPCGRGQRIGIFAGSGVGKSTLMSMITRGTSAELNVVALVGERGREVREFIEHDLGEEGL  210
            + CG GQR+GIFA++G GK+ LM M+   T A++ V++L+GERGREV EF++   + +  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  211  ARSVVVIATSDTPPLVRLRAGSVATRIAEYYRDEGADVLLMMDSVTRAAMAQREVGLSVG  270
             + V+V+ATSD P++ R  A+ +AT +AEY+RD+G  V+L +DS+TR A A R+V+L+ G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  271  EPPATRGYPPSVFAMLAALLERAGPGARGSITGLYTVLVEGDDHNEPIADAARSILDGHI  330
            E PA RGYP+SVF  L+ LLER+G+ + GSIT++YTVL+E++++ +P+AD  RSILDGH+
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  331  VLDRKLATAGHFPAIQALDSISRVANKITSREQRADATELRRLMAAHREVRELVEIGAYV  390
             L RKLA  GH+PAI+ L S+SRV  ++T+  +  +A+ +R+LM+   E++ ++++G Y 
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  391  QGTNPDADRANAAWPQISAFLRQDLDERLTAEDA  424
             G N D DRA   +  + A L Q + +  + +D+
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

659) DaAHT2_1185 in NC_014216


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  231 bits (862),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 170/422 (41%), Positives = 278/422 (66%), Gaps = 21/422 (4%)

Query  26   QVIGMVIESEGPGIPVGSICEIDVFRGQAKV--PAEVVGFREGKVLLMPLGEMRGVEPGG  83
            ++ G +IE+E  ++++G +CEI   + Q +V   A+VVG++  + +L  +G+ +G+  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  84   AIRLVEGAARVPVSQDLLGRIIDGLGQPMD----GNGPLPGESFYPLYAEPLNPMTRERI  139
             +     A    V+  +LG ++D  G+ ++      +P++ E    +   P +  +R  +
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV--APPSYASRVGV  132

Query  140  TDPVDVGVRAINGLLTLGKGQRIGIMAGSGVGKSTLMGMIARHTAADISVIALIGERGRE  199
             +P+  GVRAI+GLLT G GQR+GI A++G GK+ LM M+  +T AD+ VI+LIGERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  200  LKDFIERDLGPEGLARSVVVVATSDQPPLVRMRGAYLAMAVAEYFRDLGRDVVLMMDSVT  259
            + +F++   +++   + V+V ATSD P++ R  +A LA +VAEYFRD G+ VVL +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  260  RYAMSGREVGLAIGEPPTSRGYTPSVFGQLPKLLERAGTCQGKGSITGIFTVLVEGDDMN  319
            RYA + R+V+LA GE P+ RGY +SVF++LP+LLER+G+  + GSIT+++TVL+E+++  
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-TSEGSITAFYTVLLESEEEA  311

Query  320  EPIADAVRSIVDGHIVLSRDLASQGHYPAIEVMGSVSRCMSDVVP---EEQVRAAHRF--  374
            +P+AD +RSI+DGH+ LSR LA+QGHYPAI+V+ SVSR  ++V      EQ  A +++  
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  375  -LEVLALYRRSEDLINIGAYAKGSNPKIDGAIAMIDKLNGYLRQAVNDRVTFSDSAAQLQ  433
             LE L L+      I++G Y  G N   D A+ M D L++ L Q+V +  +F D+ + ++
Sbjct  372  RLEELQLF------IDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

Query  434  AL  435
            A+
Sbjct  426  AF  427

660) fliI in NC_011312


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  231 bits (862),  Expect = 7e-62, Method: Compositional matrix adjust.
 Identities = 157/376 (42%), Positives = 249/376 (67%), Gaps = 12/376 (3%)

Query  58   AEVVGFSGDNLFLMPNEQISGVLPGAKVTPIADVSGIPVGMELLGRVIDGVGKPIDGLGD  117
            A+VVG+  +   L    +  G+  +  + P +   +  VG  +LG V+D  GK ++    
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVE----  104

Query  118  IYTEQTASFTSTPINPL------SRKPIREPLDVGLKAINGLLTVGKGQRIGLFAGSGVG  171
             +T + A+++   +  +      SR  +REPL  G++AI+GLLT G GQR+G+FA++G G
Sbjct  105  RFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCG  164

Query  172  KSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEDILGTEGRQRSVVVAAPADSSPLMRL  231
            K++ + M+   T A+V V+GLIGERGREV EF++ + +++ +++ V+V A +D +++ R 
Sbjct  165  KTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRC  224

Query  232  KGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPA  291
            ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ GE PA +GYP+SVF +LP 
Sbjct  225  NAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPR  284

Query  292  LVERAGNGNEDQGSITAFFTVLTEGDDLQDPIADAARAILDGHIVLSREMADAGHYPAID  351
            L+ER+G  +E  GSITAF+TVL E+++  DP+AD  R+ILDGH+ LSR +A+ GHYPAID
Sbjct  285  LLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAID  342

Query  352  VERSVSRVMPQITDEEHMLMSKAVRQVLATCRKNQDLVSIGAYKPGTNPAIDQAFTLKPR  411
            V +SVSRV  Q+T   H   + AVR++++     Q ++ +G Y+PG N   D+A  ++  
Sbjct  343  VLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDS  402

Query  412  LDEYLQQRMKETVPFD  427
            L   L Q + +  +FD
Sbjct  403  LKAWLCQPVAQYSSFD  418

661) fliI in NC_021237


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  231 bits (861),  Expect = 7e-62, Method: Compositional matrix adjust.
 Identities = 167/412 (41%), Positives = 275/412 (67%), Gaps = 12/412 (2%)

Query  33   RMVGLTLEAEGLRAAMGTRCMVINDDSYHPVKVEAEVMGFSGSKVFLMPVGSVAGIAPGA  92
            ++ G  +EAE    A+G  C +  +     V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLADTGR-LP--MGMSMLGRVLDGAGRALD---GKGAMRAEDWVPMDGPTINPLKRD  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      A  +E++V   +P   +  R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISQPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERG  206
             + +PL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   TEAD++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF++ + + +   + V+V + +D +++ R  AA   T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TR+A+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPAVISPDNMARAQYFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV   V +P +  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQARDLISVGAYVAGGDRDTDTAISLHPAMVAYLRQGLNDNISLGHS  438
            L +R ++ + +I +G Y +G + D D A+ ++ ++ A L Q + +  S++++
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

662) fliI in NC_004129


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  231 bits (861),  Expect = 7e-62, Method: Compositional matrix adjust.
 Identities = 167/412 (41%), Positives = 275/412 (67%), Gaps = 12/412 (2%)

Query  33   RMVGLTLEAEGLRAAMGTRCMVINDDSYHPVKVEAEVMGFSGSKVFLMPVGSVAGIAPGA  92
            ++ G  +EAE    A+G  C +  +     V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLADTGR-LP--MGMSMLGRVLDGAGRALD---GKGAMRAEDWVPMDGPTINPLKRD  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      A  +E++V   +P   +  R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISQPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERG  206
             + +PL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   TEAD++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF++ + + +   + V+V + +D +++ R  AA   T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TR+A+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPAVISPDNMARAQYFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV   V +P +  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQARDLISVGAYVAGGDRDTDTAISLHPAMVAYLRQGLNDNISLGHS  438
            L +R ++ + +I +G Y +G + D D A+ ++ ++ A L Q + +  S++++
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

663) fliI in NC_018177


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  231 bits (861),  Expect = 7e-62, Method: Compositional matrix adjust.
 Identities = 166/414 (41%), Positives = 273/414 (66%), Gaps = 16/414 (3%)

Query  33   RMVGLTLEAEGLQAAVGSRCLVINNDRYHPSQV--EAEVMGFSGGKLFLMPVGSLAGIAP  90
            ++ G  +EAE  + A+G  C +      H  QV   A+V+G+   +  L  +G+  G++ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRG--WHQKQVVARAQVVGLQRERTVLSLIGNAQGLS-  71

Query  91   GARVVPLADTGR-LP--MGTSMLGRVIDGAGRALD---GKGGMKAEDWVPMDGPVINPLK  144
              R V L  TGR L+  +G S+LG V+D +G+ ++      +  +E++V   +P   +  
Sbjct  72   --RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-S  128

Query  145  RHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGE  204
            R  + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   TEAD++V+GLIGE
Sbjct  129  RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGE  188

Query  205  RGREVKEFIENILGEESIKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLM  264
            RGREV EF++ + + +   + V+V + +D +++ R  AA   T +AEYFRD+GK V+L++
Sbjct  189  RGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFI  248

Query  265  DSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPSLVERAGNAEAGGGSITAFYTVLSE  324
            DS+TR+A+A R++ALA GE PA +GYP+SVF +LP L+ER+G   ++ GSITAFYTVL E
Sbjct  249  DSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLE  306

Query  325  GDDQQDPIADAARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVSAEHVRNSQRF  384
            ++++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV ++ H  ++   
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  385  KQLWSRYQQSRDLISVGAYVPGGDAETDLAIARQAEMVGYLRQGLNESEDLAHS  438
            ++L +R ++ + +I +G Y PG + + D A+  +  + + L Q + +   + ++
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

664) Psefu_1925 in NC_015556


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  230 bits (858),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 166/386 (44%), Positives = 260/386 (68%), Gaps = 12/386 (3%)

Query  33   RMVGLTLEAEGLRAALGSRCLVINDDSYHPVQVEAEVMGFSSGKIYLMPVGSLAGIAPGA  92
            ++ G  +EAE    A+G  C +  +     V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLPDTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMKAEDWVPMDGPTINPLKRH  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAEIIVVGLIGERG  206
             + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   TEA+++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIDEILGEEGIKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF+D + + +   + V+V + +D +++ R  AA   T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRFAQAQREIALAIGEPPATKGYPPSVFAKLPRLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TR+A+A R++ALA GE PA +GYP+SVF +LPRL+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASISRVMPQVVSPEHMRNAQRFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV +P H  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQSRDLISVGAYVPGGDADTD  412
            L +R ++ + +I +G Y PG + D D
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDND  394

665) Tmz1t_2903 in NC_011662


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  230 bits (858),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 150/341 (44%), Positives = 236/341 (70%), Gaps = 4/341 (1%)

Query  122  VGDALLGRVVDGAGRPLD--GQGPLHTQETRSLQGRAINPLARAPIAQPLDVGVRAINAL  179
            VG ++LG V+D +G+ ++          E R ++  + +  +R  + +PL  GVRAI++L
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  180  LTVGRGQRLGLFAGSGVGKSVLIGMMARYTEAEVIVVGLIGERGREVKEFIDHSLGPEGL  239
            LT G GQR+G+FA++G GK++L+ M+   TEA+V+V+GLIGERGREV EF+D   +++  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  240  ARSVVVAAPADTSPLMRMQGAAYATTVAEYFRDQGKQVLLIMDSLTRYAMAQREIALAIG  299
             + V+V A +D +++ R ++A  ATTVAEYFRDQGK+V+L++DS+TRYA A R++ALA G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  300  EPPVTRGYPPSVFARLPALVERAGNGPEGGGSITAFYTVLAEGDDQQDPIADAARAILDG  359
            E P  RGYP+SVF  LP L+ER+G  +E  GSITAFYTVL E++++ DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  360  HFVLSRNLADQGHYPAIDIEQSISRAMHNLVGDDHFNVVRQFKQFFSRYQRSRDLIAVGA  419
            H+ LSR+LA+QGHYPAID+ +S+SR   ++    H +     +++ +R +  + +I +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  420  YQPGGDPLLDMAVKLYPRLEAFLQQGIQEHETYEGALQKLA  460
            Y+PG +   D A+++   L A L Q + +  +++++L  + 
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

666) fliI in NC_006677


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  230 bits (859),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 155/373 (42%), Positives = 252/373 (68%), Gaps = 15/373 (4%)

Query  55   VVQSEVVGFQGDVARLMSFGPLDGIGPGCEARIPLNRHDGGLGVNESW-----LGRVLDP  109
            V +++VVG+Q + + L  +G  +G++ +    + L   + +L+   +W     LG VLDP
Sbjct  46   VARAQVVGLQRERTVLSLIGNAQGLSRD----VVLYPTGRALS---AWVGYSVLGAVLDP  98

Query  110  LGQPIDGKGP-LFPSFERQPVQCPPPNAASRARLGERIDLGVRALDTFTTCRRGQRLGLF  168
             G+ ++   P + P  E + ++ +PP+ ASR  + E +  GVRA+D + TC  GQR+G+F
Sbjct  99   TGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIF  158

Query  169  AGSGVGKSTLLSMLARGADCDVAVISLVGERGREVREFIEDDLGPEGLARSVLVIATSDS  228
            A++G GK+ L+ ML   ++ DV VI+L+GERGREV EF++   +++   + VLV+ATSD 
Sbjct  159  ASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDF  218

Query  229  PPLMRREAALSAMAIAEYFRNQGKSVLLLMDSVTRFCMALREIGLSAGEPPATRGYPPSV  288
            P++ R +AA  A ++AEYFR+QGK V+L++DS+TR+  ALR+++L++GE PA RGYP+SV
Sbjct  219  PSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASV  278

Query  289  FAELPRLLERAGPGYADQGMITALFTVLVEGDDQNEPVADAVRGILDGHIILDRKIGEQG  348
            F +LPRLLER+G+  + +G ITA++TVL+E++++ +P+AD +R+ILDGH+ L RK++ QG
Sbjct  279  FDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQG  336

Query  349  RYPAIDVLRSLSRAVPGCNSPEENALTQRARAAMATYQRMADMIRLGAYKPGTDREVDEA  408
            +YPAIDVL+S+SR      +P +   +   R  M+  + +   I LG Y+PG + + D A
Sbjct  337  HYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRA  396

Query  409  IALMPKLNEFLSQ  421
            + +   L+  L Q
Sbjct  397  MQMRDSLKAWLCQ  409

667) S58_72220 in NC_020453


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  230 bits (859),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 171/424 (41%), Positives = 282/424 (67%), Gaps = 20/424 (4%)

Query  35   QVSGTLIRAIVPDARVGDICLLRSAHASDDL--RAEIVGIEGGVALLTPLGDVAGLSART  92
            +++G +I A + D  +G++C +R +    ++  RA++VG++   ++L+ +G+  GLS   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  93   EVVSTRQAL---------GIMVGPAllgrvvdglgrlldvQERGWPEFDQVrgvrgaapa  143
             + +T +AL         G +++P+               +ER          +  A+P+
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEER---------VIDVAPPS  125

Query  144  plarrlvgrplSLGIRAIDGLLSCGEGQRIGIYGEPGAGKSSLVAQIVQNADVDVCVVAL  203
              +R  V  PL  G+RAIDGLL+CG GQR+GI++ +G GK+ L+  ++++++ DV V++L
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  204  IgergrevremverCLAGAARARSVVIVATSDRPPTERVTAAYVATTIAEYFRDRNARVL  263
            IGERGREV E V+   A+  + + V++ ATSD P+ +R  AA +ATT+AEYFRD+  RV+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  264  LVQDSVTRFARALREIGLAAGEPPTRRGFPPSVFAALPELLERSGPGVTGSITAFYTVLV  323
            L  DS+TR+ARALR+++LA+GE P+RRG+P+SVF  LP LLER+G+   GSITAFYTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  324  EGDGTADPIAEETRSILDGHIALSPKLAQSAHFPAIDIVSSLSRVMDQIVTSRHRAAAMR  383
            E++  ADP+A+E RSILDGH+ LS KLA  +H+PAID++ S+SRV +Q+ T+ H   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  384  VRELIARYAELEFLLQVGEYKAGSDPIADEAIAKQEAIKSFLRQGLGEAVPWDRTIQQLE  443
            VR L++R  EL++++++GEY++G +   D A+  ++++K+ L Q +++  + D T+  ++
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

Query  444  QLAS  447
             +A 
Sbjct  426  AFAD  429

668) fliI in NC_020209


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  230 bits (858),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 167/412 (41%), Positives = 273/412 (67%), Gaps = 12/412 (2%)

Query  33   RMVGLTLEAEGLRAAMGSRCLVINDDSYHPVQVEAEVMGFSGSKVFLMPVGSVAGIAPGA  92
            ++ G  +EAE    A+G  C +  +     V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLADTGR-LP--MGMSMLGRVLDGAGRPLD---GKGGMKAEDWVPMDGPTINPLNRN  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   + +R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISQPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERG  206
             + +PL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   TEAD++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIEHSLGLEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF++   + +   + V+V + +D +++ R  AA   T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TR+A+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPSVVTPEHMARAQQFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV   V TP H  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQSRDLISVGAYVAGGDRETDLAIALQPQLVTYLRQGLNDNISMGES  438
            L +R ++ + +I +G Y +G + + D A+ ++  L + L Q + +  S +++
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

669) Daci_0641 in NC_010002


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  230 bits (856),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 176/436 (41%), Positives = 290/436 (67%), Gaps = 31/436 (7%)

Query  47   RLTGLVLEATGLQVPVGSQC-----WIRQQGQDPVLAEVVGFAGERAFLMPAGDIQGLSS  101
            ++TG ++EA   +V++G  C     W  +Q Q    A+VVG+  ER+ L   G+ QGLS 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGW--HQKQVVARAQVVGLQRERTVLSLIGNAQGLSR  72

Query  102  GAIVTPAEPFVAPLRFGDGVEPPVSLAAGVLRLPIGSGLLGRVVDSQGQPLDHGGP-LAD  160
            + ++ P+   +++                     +G ++LG V+D+ G+ +++  P +A 
Sbjct  73   DVVLYPTGRALSAW--------------------VGYSVLGAVLDPTGKIVERFTPEVAP  112

Query  161  VSAD-LLDRNPINAMDRDPVRETLDTGVRSLNALLTVGRGQRLGLFAGSGVGKSVLLGMM  219
            +S + ++D  P +   R  VRE L TGVR++++LLT G GQR+G+FA++G GK++L+ M+
Sbjct  113  ISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHML  172

Query  220  ARYTQADVIVVGLIGERGREVKEFVEDILGAQDRSRavvvaapadappLLRMQGAAYATA  279
               T+ADV+V+GLIGERGREV EFV+ + +++ + + V+V A +D P++ R ++A  AT+
Sbjct  173  IEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATT  232

Query  280  IAEHFRDKGQHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSCFAKLPALVERSGNG  339
            +AE FRD+G++V+L++DS+TRYA A R++ALA GE PA +GYP+S F +LP L+ER+G  
Sbjct  233  VAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-  291

Query  340  LNGVGSITAFYTVLSEGDDQQDPIADAARAILDGHVVLSRALAESGHYPAIDIEQSASRV  399
              + GSITAFYTVL E++++ DP+AD  R+ILDGH+ LSR LA  GHYPAID+ +S SRV
Sbjct  292  -TSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRV  350

Query  400  MHNVVSREHFELARRFRAVYSRYQKGRDLVQVGAYMAGSDPQMDEAIRLQPAMAAFLQQS  459
              +V +  H E A   R + +R +  + ++++G Y +G + + D A++++ ++ A L Q+
Sbjct  351  FGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQP  410

Query  460  MFESASMDESISGMAA  475
            + + +S D+++SGM A
Sbjct  411  VAQYSSFDDTLSGMNA  426

670) DelCs14_0579 in NC_015563


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  230 bits (856),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 176/436 (41%), Positives = 290/436 (67%), Gaps = 31/436 (7%)

Query  47   RLTGLVLEATGLQVPVGSQC-----WIRQQGQDPVLAEVVGFAGERAFLMPAGDIQGLSS  101
            ++TG ++EA   +V++G  C     W  +Q Q    A+VVG+  ER+ L   G+ QGLS 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGW--HQKQVVARAQVVGLQRERTVLSLIGNAQGLSR  72

Query  102  GAIVTPAEPFVAPLRFGDGVEPPVSLAAGVLRLPIGSGLLGRVVDSQGQPLDHGGP-LAD  160
            + ++ P+   +++                     +G ++LG V+D+ G+ +++  P +A 
Sbjct  73   DVVLYPTGRALSAW--------------------VGYSVLGAVLDPTGKIVERFTPEVAP  112

Query  161  VSAD-LLDRNPINAMDRDPVRETLDTGVRSLNALLTVGRGQRLGLFAGSGVGKSVLLGMM  219
            +S + ++D  P +   R  VRE L TGVR++++LLT G GQR+G+FA++G GK++L+ M+
Sbjct  113  ISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHML  172

Query  220  ARYTQADVIVVGLIGERGREVKEFVEDILGAQDRSRavvvaapadappLLRMQGAAYATA  279
               T+ADV+V+GLIGERGREV EFV+ + +++ + + V+V A +D P++ R ++A  AT+
Sbjct  173  IEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATT  232

Query  280  IAEHFRDKGQHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSCFAKLPALVERSGNG  339
            +AE FRD+G++V+L++DS+TRYA A R++ALA GE PA +GYP+S F +LP L+ER+G  
Sbjct  233  VAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-  291

Query  340  LNGVGSITAFYTVLSEGDDQQDPIADAARAILDGHVVLSRALAESGHYPAIDIEQSASRV  399
              + GSITAFYTVL E++++ DP+AD  R+ILDGH+ LSR LA  GHYPAID+ +S SRV
Sbjct  292  -TSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRV  350

Query  400  MHNVVSREHFELARRFRAVYSRYQKGRDLVQVGAYMAGSDPQMDEAIRLQPAMAAFLQQS  459
              +V +  H E A   R + +R +  + ++++G Y +G + + D A++++ ++ A L Q+
Sbjct  351  FGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQP  410

Query  460  MFESASMDESISGMAA  475
            + + +S D+++SGM A
Sbjct  411  VAQYSSFDDTLSGMNA  426

671) fliI in NC_007492


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (855),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 168/414 (41%), Positives = 277/414 (67%), Gaps = 16/414 (3%)

Query  33   RMVGLTLEAEGLRAAMGTRCMVINDDTYHPSQV--EAEVMGFSGSKVFLMPVGSVAGIAP  90
            ++ G  +EAE    A+G  C +  +   H  QV   A+V+G+   +  L  +G+  G++ 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRG--WHQKQVVARAQVVGLQRERTVLSLIGNAQGLS-  71

Query  91   GARVVPLADTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMKAEDWVPMDGPTINPLN  144
              R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   + +
Sbjct  72   --RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-S  128

Query  145  RDPISVPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGE  204
            R  +  PL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   TEAD++V+GLIGE
Sbjct  129  RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGE  188

Query  205  RGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLM  264
            RGREV EF++ + + +   + V+V + +D +++ R  AA   T +AEYFRD+GK V+L++
Sbjct  189  RGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFI  248

Query  265  DSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEKGGGSITAFYTVLSE  324
            DS+TR+A+A R++ALA GE PA +GYP+SVF +LP+L+ER+G +  + GSITAFYTVL E
Sbjct  249  DSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGAT--SEGSITAFYTVLLE  306

Query  325  GDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPAVVAPEHMQRAQYF  384
            ++++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV   V +P H ++A   
Sbjct  307  SEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAV  366

Query  385  KQLWSRYQQSRDLISVGAYVAGGDRETDLAINLQPQLVRYLRQGLNDKISLGES  438
            ++L +R ++ + +I +G Y +G + + D A++++  L   L Q + +  S++++
Sbjct  367  RKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

672) fliI in NC_012660


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (855),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 168/412 (41%), Positives = 273/412 (67%), Gaps = 12/412 (2%)

Query  33   RMVGLTLEAEGLRAAMGSRCMVINDDSYHPVQVEAEVMGFSGNKIFLMPVGSLAGIAPGA  92
            ++ G  +EAE    A+G  C +  +     V   A+V+G+  ++  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLADTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMKAEDWVPMDGPTINPLNRN  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   + +R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISVPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERG  206
             +  PL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   TEAD++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIEHSLGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF++   + +   + V+V + +D +++ R  AA   T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TR+A+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPAVVTPEHMARAQHFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV   V TP H  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQSRDLISVGAYVAGGDRDTDLAIALQPQLVTYLRQGLNDKISMGES  438
            L +R ++ + +I +G Y +G + D D A+ ++  L + L Q + +  S +++
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

673) Mfla_1975 in NC_007947


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (853),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 151/345 (44%), Positives = 246/345 (72%), Gaps = 8/345 (2%)

Query  125  VGEALLGRVIDAAGRPLD----ELGPLNSEHSVPLNTRPLNPLSRAPIEEVLDVGVRAIN  180
            VG ++LG V+D++G+ ++    E++P++ E+ + +   +    SR  + E L  GVRAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA--SRVGVREPLITGVRAID  144

Query  181  SMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTTAEVIVVGLIGERGREVKEFIEQILGPE  240
            ++LT G GQRMG+FA++G GK++L+ M+   T A+V+V+GLIGERGREV EF++ + +++
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  241  GLaravvvaapadvpaLMRLQGASYATAIAEYFRNQGKDVLLIMDSLTRYAMAQREIALA  300
               + V+V A +D P++ R ++A  AT++AEYFR+QGK V+L++DS+TRYA A R++ALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  301  IGEPPATKGYPPSVFAKLPALVERAGNGKPGEGSITAFYTVLTEGDDQQDPIADSARAIL  360
             GE PA +GYP+SVF +LP L+ER+G    +EGSITAFYTVL E++++ DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPMADEIRSIL  322

Query  361  DGHIVLSRSLAESGHYPAIDIEQSISRAMHNITSPEHQKNARKLKQLNSRYTRNQDLINV  420
            DGH+ LSR LA  GHYPAID+ +S+SR   ++T+P H  +A  +++L +R    Q +I++
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  421  GAYESGSDPVLDEAIMRHEAIEAFLQQDIKESASWTDSVDALASL  465
            G Y +G +   D A+  ++++ A L Q + + +S  D++ ++ ++
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

674) Jden_2024 in NC_013174


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (854),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 142/336 (43%), Positives = 235/336 (70%), Gaps = 6/336 (1%)

Query  95   VGSGLLGRVIDPLGEPID----GLGPLTHVDFVDVDAAAPHPLARQRVSEPLALGVRVMD  150
            VG ++LG V+DP G  ++     ++P+++   +DV  A+P   +R  V EPL  GVR +D
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV--APPSYASRVGVREPLITGVRAID  144

Query  151  TLTSVGRGQRMGLFAGSGVGKSTLLSMIARGTDAQVSVIALIGERGREVREFLEDDLGPE  210
             L + G GQRMG+FA++G GK+ L+ M+   T+A+V VI+LIGERGREV EF++   +++
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  211  GLARSIVVIATSDQPALMRQRAAFTATRIAQWLAQMGNDVVLMMDSLTRVAMAQREIGLS  270
               + ++V+ATSD P++ R  AA  AT +A+ + + G+ VVL +DS+TR A A R+++L+
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  271  VGEPPATRGYPPSTFSVLANLLERAGSAEQGTVTGLYTVLVDGDDHNEPIADAARSILDG  330
             GE PA RGYP+S F  L+ LLER+G++ +G++T++YTVL++++++ +P+AD  RSILDG
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  331  HVVLDRKLAVRGHYPAIDALASISRVASKVNDPANQAHADTLRRFMAAKAGVQDLIDIGA  390
            H+ L RKLA +GHYPAID L S+SRV ++V  P++  +A ++R++M+    +Q +ID+G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  391  YAAGSNPTVDAALAQAQDITSFLCQRMGEPAPLAES  426
            Y +G N   D A+   + + + LCQ +++ +++ ++
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

675) fliI in NC_020912


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (853),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 260/386 (68%), Gaps = 12/386 (3%)

Query  33   RMVGLTLEAEGLQAAVGSRCNVINESGYHPVQVEAEVMGFSGSKVYLMPVGSLAGIAPGA  92
            ++ G  +EAE  + A+G  C++        V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLPDTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMRAEDWVPMDGPTINPLKRH  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTRADIIVVGLIGERG  206
             + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   T AD++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF+D + + +   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TRYA+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASISRVMPQVVEAEHLRDAQRFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV  + H  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQSRDLISVGAYVAGGDPETD  412
            L +R ++ + +I +G Y +G + + D
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDND  394

676) fliI in NC_018080


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (853),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 260/386 (68%), Gaps = 12/386 (3%)

Query  33   RMVGLTLEAEGLQAAVGSRCNVINESGYHPVQVEAEVMGFSGSKVYLMPVGSLAGIAPGA  92
            ++ G  +EAE  + A+G  C++        V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLPDTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMRAEDWVPMDGPTINPLKRH  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTRADIIVVGLIGERG  206
             + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   T AD++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF+D + + +   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TRYA+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASISRVMPQVVEAEHLRDAQRFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV  + H  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQSRDLISVGAYVAGGDPETD  412
            L +R ++ + +I +G Y +G + + D
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDND  394

677) fliI in NC_011770


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (853),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 260/386 (68%), Gaps = 12/386 (3%)

Query  33   RMVGLTLEAEGLQAAVGSRCNVINESGYHPVQVEAEVMGFSGSKVYLMPVGSLAGIAPGA  92
            ++ G  +EAE  + A+G  C++        V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLPDTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMRAEDWVPMDGPTINPLKRH  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTRADIIVVGLIGERG  206
             + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   T AD++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF+D + + +   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TRYA+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASISRVMPQVVEAEHLRDAQRFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV  + H  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQSRDLISVGAYVAGGDPETD  412
            L +R ++ + +I +G Y +G + + D
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDND  394

678) fliI in NC_017548


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (853),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 260/386 (68%), Gaps = 12/386 (3%)

Query  33   RMVGLTLEAEGLQAAVGSRCNVINESGYHPVQVEAEVMGFSGSKVYLMPVGSLAGIAPGA  92
            ++ G  +EAE  + A+G  C++        V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLPDTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMRAEDWVPMDGPTINPLKRH  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTRADIIVVGLIGERG  206
             + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   T AD++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF+D + + +   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TRYA+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASISRVMPQVVEAEHLRDAQRFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV  + H  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQSRDLISVGAYVAGGDPETD  412
            L +R ++ + +I +G Y +G + + D
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDND  394

679) fliI in NC_017549


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (853),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 260/386 (68%), Gaps = 12/386 (3%)

Query  33   RMVGLTLEAEGLQAAVGSRCNVINESGYHPVQVEAEVMGFSGSKVYLMPVGSLAGIAPGA  92
            ++ G  +EAE  + A+G  C++        V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLPDTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMRAEDWVPMDGPTINPLKRH  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTRADIIVVGLIGERG  206
             + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   T AD++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF+D + + +   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TRYA+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASISRVMPQVVEAEHLRDAQRFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV  + H  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQSRDLISVGAYVAGGDPETD  412
            L +R ++ + +I +G Y +G + + D
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDND  394

680) fliI in NC_002516


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (853),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 260/386 (68%), Gaps = 12/386 (3%)

Query  33   RMVGLTLEAEGLQAAVGSRCNVINESGYHPVQVEAEVMGFSGSKVYLMPVGSLAGIAPGA  92
            ++ G  +EAE  + A+G  C++        V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLPDTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMRAEDWVPMDGPTINPLKRH  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTRADIIVVGLIGERG  206
             + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   T AD++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF+D + + +   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TRYA+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASISRVMPQVVEAEHLRDAQRFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV  + H  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQSRDLISVGAYVAGGDPETD  412
            L +R ++ + +I +G Y +G + + D
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDND  394

681) fliI in NC_021577


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (853),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 260/386 (68%), Gaps = 12/386 (3%)

Query  33   RMVGLTLEAEGLQAAVGSRCNVINESGYHPVQVEAEVMGFSGSKVYLMPVGSLAGIAPGA  92
            ++ G  +EAE  + A+G  C++        V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLPDTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMRAEDWVPMDGPTINPLKRH  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTRADIIVVGLIGERG  206
             + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   T AD++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF+D + + +   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TRYA+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASISRVMPQVVEAEHLRDAQRFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV  + H  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQSRDLISVGAYVAGGDPETD  412
            L +R ++ + +I +G Y +G + + D
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDND  394

682) fliI in NC_008463


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (853),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 164/386 (43%), Positives = 260/386 (68%), Gaps = 12/386 (3%)

Query  33   RMVGLTLEAEGLQAAVGSRCNVINESGYHPVQVEAEVMGFSGSKVYLMPVGSLAGIAPGA  92
            ++ G  +EAE  + A+G  C++        V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLPDTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMRAEDWVPMDGPTINPLKRH  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTRADIIVVGLIGERG  206
             + EPL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   T AD++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF+D + + +   + V+V + +D +++ R  AAQ  T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TRYA+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASISRVMPQVVEAEHLRDAQRFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV  QV  + H  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQSRDLISVGAYVAGGDPETD  412
            L +R ++ + +I +G Y +G + + D
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDND  394

683) Tbd_1603 in NC_007404


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (854),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 149/352 (43%), Positives = 251/352 (72%), Gaps = 4/352 (1%)

Query  115  PSDRTRHLPVGEVLLGRVLDSNGRPLDGLGSVHTSATAP--LNNRAANPLSRAPISEILD  172
            P++R+    VG  +LG VLD+ G+ ++ + +  ++ +    ++  +++  SR  + E L 
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLI  137

Query  173  VGVRAINSMLTIGRGQRMGLFAGSGVGKSVLLGMMARYTSADVIVVGLIGERGREVKEFI  232
             GVRAI+++LT G GQRMG+FA++G GK++L+ M+   T ADV+V+GLIGERGREV EF+
Sbjct  138  TGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFV  197

Query  233  EQILGEEGLaravvvaapaDTPPLMRLQGAAYATAIAEHFRDEGKNVLLIMDSLTRYAMA  292
            + + + +   + V+V A +D P++ R ++A  AT++AE FRD+GK V+L++DS+TRYA A
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  293  QREIALAIGEPPATKGYPPSVFAKLPALVERAGNGKPGGGSITAFYTVLTEGDDQQDPIA  352
             R++ALA GE PA +GYP+SVF +LP L+ER+G    + GSITAFYTVL E++++ DP+A
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPMA  315

Query  353  DSARAILDGHIVLSRDLAESGHYPAIDIEQSISRAMHGITSAAHQQMARRLKKLYSRYAR  412
            D  R+ILDGH+ LSR LA  GHYPAID+ +S+SR    +T+++H + A  ++KL +R   
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  413  SRDLINVGAYAPGTDPLLDEAIRLQEGIEAFLQQNIPERAGVEESLAALSTL  464
             + +I++G Y PG +   D A+++++++ A L Q +++ ++ +++L++++++
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

684) Slip_0956 in NC_014220


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (853),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 171/414 (42%), Positives = 285/414 (69%), Gaps = 9/414 (2%)

Query  30   QVVGLTIESDGPRARMGELCLVRSPGRSDKPL--RCEVVGFKGNKTLLMPLGELDGIGPG  87
            ++ G  IE++     +GELC +R  G+ +K +  R +VVG++ ++T+L  +G+ +G++ +
Sbjct  15   KITGPIIEAELRDVAIGELCEIRR-GWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  88   SEIVATGQTFKvrvgrslvgrvlnglgEPID----GGGPVETETTYPVMNHPPDPLKRRR  143
              + +TG+++  +VG S++G VL+  G  ++      +P+  E    V   PP    R  
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV--APPSYASRVG  131

Query  144  ITEVLPVGVRAIDALVTVGKGQRMGILAGSGVGKSTLLGMIARNTEADVSVIALIGERGR  203
            + E L  GVRAID+L+T G GQRMGI+A++G GK+ L+ M+  +TEADV VI+LIGERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  204  EVRDFLERDLGEEGLKRSVVVVATSDQPALIRLRGAFVATSIAEFFRDQGLDVLLLMDSL  263
            EV +F++   + +   + V+V ATSD P++ R  +A +AT++AE+FRDQG  V+L++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  264  TRFALAQREIGLAIGEPPATRGFTPSVFALLPKLLERAGASDKGTITGLYAVLVEGDDMN  323
            TR+A A R+++LA GE PA RG+ +SVF  LP+LLER+GA+  G+IT++Y+VL+E+++  
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEA  311

Query  324  EPITDAVRGIVDGHIALTRELASLNHFPAIDVLGSISRVMPEIVSSSHLESAGRFRSLLA  383
            +P++D +R+I+DGH+ L+R LA+  H+PAIDVL S+SRV  ++ +++H E A+  R L++
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  384  VYREAKDLVDIGAYRRGANPRIDEALELIDGCNAFLQQGVWEKASFNDTVLELE  437
               E + ++D+G YR G N   D A+++ D+ +A L Q V + +SF+DT+  ++
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

685) fliI in NC_017911


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  229 bits (852),  Expect = 4e-61, Method: Compositional matrix adjust.
 Identities = 168/419 (41%), Positives = 276/419 (66%), Gaps = 12/419 (2%)

Query  33   RMVGLTLEAEGLRAAMGSRCLVINDDSYHPVQVEAEVMGFSGSKIFLMPVGSLAGIAPGA  92
            ++ G  +EAE    A+G  C +  +     V   A+V+G+   +  L  +G+  G++   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLS---  71

Query  93   RVVPLADTGR-LP--MGMSMLGRVLDGAGRALD---GKGGMKAEDWVPMDGPTINPLKRN  146
            R V L  TGR L+  +G S+LG VLD +G+ ++      +  +E++V   +P   +  R 
Sbjct  72   RDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRV  130

Query  147  PISVPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERG  206
             +  PL  G+R+I+GLLT G GQR+G+FA++G GK++L+ M+   TEAD++V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  207  REVKEFIEHSLGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDS  266
            REV EF++   + +   + V+V + +D +++ R  AA   T +AEYFRD+GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  267  LTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGD  326
            +TR+A+A R++ALA GE PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESE  308

Query  327  DQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPAVVTPEHMARAQQFKQ  386
            ++ DP+AD  R++LDGH+ LSR+LA +GHYPAID+  S+SRV   V TP H  +A   ++
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  387  LWSRYQQSRDLISVGAYVAGGDRDTDLAIALQPQLVTYLRQGLNDKITMGESQSHLQSI  445
            L +R ++ + +I +G Y +G + D D A+ ++  L + L Q + +  + +++ S ++++
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

686) Atc_1487 in NC_015850


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  228 bits (850),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 168/398 (43%), Positives = 267/398 (68%), Gaps = 11/398 (2%)

Query  1    MVGLVLEAEGMEASVGSRCRVIAA-NQRGI--DAEVVGFHGERLQLMAAGDTHGVALGAR  57
            + G ++EAE  + ++G  C +  + +Q+ +   A+VVG++ ER  L   G+++G  L+  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQG--LSRD  73

Query  58   VQLLPGEAQGSASP--ALLGRVIDGLGQPLD--GGDAVPNRTPIPLMGTPLNPMNRMPIR  113
            V L P     SA    ++LG V+D  G+ ++    +  P      +  +P +  +R+ +R
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  114  HPLDVGVRSINALFTVGRGARMGLFAGSGVGKSVLLGMMARNTEADVIVVGLIGERGREV  173
            +PL  GVR+I++L+T G G RMG+FA++G GK++L+ M+  +TEADV+V+GLIGERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  174  KEFIEDILGEAGLRRavvvaapadapaLTRIRGAHLATALAEYFRDRGQHVLLLMDSLTR  233
             EF++ + +     + V+V A +D P++ R  +A+LAT++AEYFRD+G++V+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  234  YAMAQREIALAVGEPPAVRGYPPSVFARLPALVERAGNGGRDGGSITAFYTVLMEGDDQQ  293
            YA A R++ALA GE PA RGYP+SVF  LP L+ER+G  +   GSITAFYTVL+E++++ 
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATS--EGSITAFYTVLLESEEEA  311

Query  294  DPIADSARAILDGHLVLSRSLAEQGHYPAIDLEASISRVMPNIVPAAQLQALHRLKRLYG  353
            DP+AD  R+ILDGHL LSR LA QGHYPAID+  S+SRV  ++  +++ +    +++L  
Sbjct  312  DPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMT  371

Query  354  RYREQRDLIAVGAYSAGLDPVLDQAVQAYPAIEAFLQQ  391
            R  E + +I +G Y +G +   D+A+Q   ++ A L Q
Sbjct  372  RLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQ  409

687) JCM7686_1778 in NC_022041


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  228 bits (850),  Expect = 6e-61, Method: Compositional matrix adjust.
 Identities = 175/395 (45%), Positives = 275/395 (70%), Gaps = 7/395 (1%)

Query  39   AQLPDGRIGEECLLRDPVSRVEITA--EIIGFDGEEAVLAPAGDVRGLSSRTEVIPTRTE  96
            A+L D  IGE C +R    + ++ A  +++G++ E +VL+  G+ +GLS    + PT   
Sbjct  23   AELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRA  82

Query  97   PLGPAGPELLGRVVDGFGRALD----GGAPVPGRVTLHAEPPLPLDRPVIDRPFITGLRV  152
              +  G  +LG V+D  G+ ++      AP++    ++  PP    R  +  P+ITG+R 
Sbjct  83   LSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRA  142

Query  153  IDGMLAMGEGQRMGIFGAAGVGKSTLLSQIIRGADADAIVLGLIGERGREVAEFLERDLG  212
            IDG+L+ G GQRMGIF++AG GK+ L+  +I  ++AD +V+GLIGERGREV+EF++   +
Sbjct  143  IDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRA  202

Query  213  PEGRKRAAVFVATSDRPaaerlratlaatacaealraQGKRVLLLIDSMTRVARALREIG  272
            ++ + +  +  ATSD P+ +R  A+  AT+ AE +R QGKRV+L+IDSMTR ARALR+++
Sbjct  203  SHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVA  262

Query  273  LAAGEPPVRRGFPPSVFAALPRLVERPGRTREGVITAIYTVLVEGdddaadpvadEVRSL  332
            LA+GE P RRG+P+SVF  LPRL+ERPG T EG ITA+YTVL+E+ ++ ADP+ADE+RS+
Sbjct  263  LASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLES-EEEADPMADEIRSI  321

Query  333  LDGHIILSRDLAARGHYPAIDVLRSKSRVMTAVaapaqiaqsqriaarlaKLDEIEILVQ  392
            LDGH+ LSR LA++GHYPAIDVL+S SRV   V++P++  Q+  +   +++L+E++++++
Sbjct  322  LDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFID  381

Query  393  VGEYRAGSDPLADEALRLRAQTDAFLQQSTGDHSN  427
            +GEYR+G +   D A+++R    A L Q+ ++ S+
Sbjct  382  LGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSS  416

688) fliI in NC_017075


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  228 bits (850),  Expect = 6e-61, Method: Compositional matrix adjust.
 Identities = 171/415 (42%), Positives = 276/415 (67%), Gaps = 27/415 (6%)

Query  50   VPVGSICEIR---QPGQPPVLAEVVGFNGDRAFLMPTGDLHGLASGarviprpaprvppr  106
            V++G +CEIR   +  Q    A+VVG++ +R+ L   G+ +GL+ +              
Sbjct  28   VAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD--------------  73

Query  107  FGVENHPWRRSEDRGLHLPMGEGLLGRVVDSHGHPLDRGGP-IADVHAQPMIR-RPINAM  164
              V   P     +R+L   +G ++LG V+D+ G  ++R  P +A +  + +I   P +  
Sbjct  74   --VVLYP----TGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA  127

Query  165  DRDPVRQALDTGVRSINALLTVGRGQRLGLFAGTGVGKSVLLGMMARYTAADVIVVGLIG  224
             R  VR++L TGVR+I++LLT G GQR+G+FA++G GK++L+ M+   T ADV+V+GLIG
Sbjct  128  SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIG  187

Query  225  ERGREVKEFIEDILGDEGrrrsvvvaapadapplvrMQGASYATAIAEHFRDRGQHVLLL  284
            ERGREV EF++ + + + + + V+V A +D P++ R ++A  AT++AE FRD+G++V+L+
Sbjct  188  ERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLF  247

Query  285  MDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERSGNGLNGVGSITAFYTVLT  344
            +DS+TRYA A R++ALA GE PA +GYP+SVF +LP+L+ER+G    + GSITAFYTVL 
Sbjct  248  IDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLL  305

Query  345  EGDDPQDPIADAARGILDGHIVLSRELAESGHYPAIDVERSISRVMTSVAPQEHIVAARK  404
            E+++  DP+AD  R+ILDGH+ LSR LA  GHYPAIDV +S+SRV   V+   H   A  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  405  LRQLLAKYNKARDLIQLGAYAPGHDAELDTAVRLHGQIVALLQQDMRECADLDAS  459
            +R+L+++ +  + +I+LG Y PG++ + D A+++++ + A L Q + + + +D +
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

689) fliI in NC_009075


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  228 bits (848),  Expect = 7e-61, Method: Compositional matrix adjust.
 Identities = 160/390 (42%), Positives = 253/390 (65%), Gaps = 23/390 (5%)

Query  56   AQVVGFNREETFLMPFKKPVGLVAGAQVLSCERQGLLRIGRS---W-----LGRIVNGLG  107
            AQVVG++RE       +  ++L++ AQ LS +   L   GR+   W     LG +++  G
Sbjct  49   AQVVGLQRE-------RTVLSLIGNAQGLSRD-VVLYPTGRALSAWVGYSVLGAVLDPTG  100

Query  108  EAID----GRGPLGGDAVLRAHPAPVNPLRKRPVRDVLDVGVRAINGLLTLGRGQRIGLM  163
              ++      +P++ + V+   P++  +  +  VR+ L  GVRAI+GLLT G GQR+G+ 
Sbjct  101  KIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTCGVGQRMGIF  158

Query  164  AGSGVGKSMLLGMITRATQADVVVVGLIGERGREVREFVDHALGEAGLAKSVLVAAPADE  223
            A++G GK+ML+ M+   T+ADV V+GLIGERGREV EFVD   +     K VLV A +D 
Sbjct  159  ASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDF  218

Query  224  SPLMRLKAAELCHAIAAHFRDTGANVLLLVDSLTRYAMAQREIALSVGEPPATRGYPPSV  283
            +++ R +AA+L  ++A  FRD G  V+L++DS+TRYA A R++AL+ GE PA RGYP+SV
Sbjct  219  PSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASV  278

Query  284  FGMLPQLVETAGNGEGAGSMSAIYTVLAEGDDQNDPVVDTARAILDGHIVLTRELAERGH  343
            F+ LP+L+E +G + + GS++A+YTVL E++++ DP+ D  R+ILDGH+ L+R LA +GH
Sbjct  279  FDNLPRLLERPG-ATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGH  337

Query  344  YPAIDVPRSVSRCMSQVAGAEHGALARKVKEMIGRHEQIRDLIALGGYVQGADPATDEAV  403
            YPAIDV +SVSR  +QV+ + H+  A  V+ ++ R E+++ +I LG Y  G +   D A+
Sbjct  338  YPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAM  397

Query  404  AKAARIDTFLRQDMLDVARHDATLAALKEL  433
                 + + L Q + + +  D TL++++ +
Sbjct  398  QMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

690) Plim_3098 in NC_014148


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  228 bits (849),  Expect = 7e-61, Method: Compositional matrix adjust.
 Identities = 162/395 (42%), Positives = 265/395 (68%), Gaps = 7/395 (1%)

Query  36   PLGSRCAIDR---DHGFPIEADVVGFRGDETLLMPLGELTGVRRGARVRLVESVPCVNVG  92
            ++G  C I R   +      A+VVG++ + T+L  +G+  G+ R+  +          VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  93   AGLLGRIIGSRGEFLD---EGSKPLLAHRADLHGKPPGPLERPRIAKIWQTGVRAIDSLL  149
             ++LG ++++ G +++       P+  +R  ++  PP+   R  +     TGVRAID+LL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  150  TLGEGQRMGIFAGSGVGKSTLLGQIARHSSADINVVALIGERGREVREFLDRDLGPEGLK  209
            T G GQRMGIFA++G GK+ L+  +  ++ AD+ V++LIGERGREV EF+D   +++   
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  210  RSVVIVATGDEPAILRLRAAWMATAIAEHFRDLGQHVVLMMDSVTRFALAQREIGLAAGE  269
            + V++ AT+D P++ R  AA +AT++AE FRD G++VVL +DS+TR+A A R+++LA+GE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  270  PPATRGYPPSVFALLPRLLERSGCSPAGSITGLYTVLVDGDDTNEPISDTVRGILDGHIV  329
             PA RGYP+SVF  LPRLLER+G ++ GSIT++YTVL+++++  +P++D +R+ILDGH+ 
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  330  LSRKLAQQGQFPAIDVLQSISRSMNDITTTEHRQWALTVRQLLSSYQQNEDLISIGAYQN  389
            LSRKLA QG++PAIDVL+S+SR   ++TT  H + A +VR+L++  ++ + +I +G Y+ 
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  390  GSNALIDSAIQARPQILGYLGQKPQEQTTFLESLS  424
            G N   D A+Q R  + + L Q   + ++F ++LS
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

691) Krad_1653 in NC_009664


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  228 bits (848),  Expect = 9e-61, Method: Compositional matrix adjust.
 Identities = 152/330 (47%), Positives = 232/330 (71%), Gaps = 4/330 (1%)

Query  107  VGPALLGRVVDALGNPLDGGPPLHTAPRGP---LHATPPPAMTRGRVDAPLSLGVRALDT  163
            VG ++LG V+D+ G+ ++   P + AP +    ++ +PP+  +R  V  PL  GVRA+D 
Sbjct  87   VGYSVLGAVLDPTGKIVERFTP-EVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDG  145

Query  164  LVPAGRGQRFGIFAGSGVGKSSLLSMIARGTSADVSVLALVGERGREVREFLEDDLGPEG  223
            L+  G GQR GIFA++G GK+ L+ M+   T ADV V++L+GERGREV EF++   +++ 
Sbjct  146  LLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHK  205

Query  224  LARSVVVIATSDEAPVLRLRASLTATTVAESFRDMGADCVLMMDSLTRVAMAQREIGLSV  283
              + V+V+ATSD ++V R  A+  ATTVAE FRD G   VL +DS+TR A A R+++L+ 
Sbjct  206  KEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAS  265

Query  284  GEPPATRGYPPSVFALMPRLLERAGPGVTGSITGIYTVLVDGDDHNEPIADNARSILDGH  343
            GE PA RGYP+SVF  +PRLLER+G+   GSIT++YTVL++++++ +P+AD+ RSILDGH
Sbjct  266  GERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  344  VVLDRRLATAGHFPTIDVLESVSRVAGRVTTPEQKSAATALRRVMAAHRDAKELIDVGAY  403
            + L R+LA  GH+P+IDVL SVSRV G+VTTP +   A+A+R++M+   + + +ID+G Y
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  404  QPGANPEVDAAVAQLPAINAFLRQDIHDIT  433
            +PG N + D A+    +++A L Q + + +
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYS  415

692) hrcN in NC_010694


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  227 bits (845),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 181/410 (45%), Positives = 287/410 (70%), Gaps = 9/410 (2%)

Query  36   ISGILIECTLPGARIGDLCRIQRS-DGGSVLS--EIVGFSPEKILLSALGALDGISQGAI  92
            I+G +IE  L +  IG+LC I+R+ +   V++  ++VG+  E+ +LS +G  +G+S++ +
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  93   IIPLYLPHSICVSERLLGSVLDGFGRALEPGGHSAFAKPGTKVRAVPVLNDAPPP-TERP  151
            + P   + S  V+  +LG+VLD  G+ +E      F+   + +    V++ APP+ + R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-----FTPEVAPISEERVIDVAPPSYASRV  130

Query  152  RIDTPLPTGLRAIDGLLTIGNGQRVGIFAGAGCGKTTLLAELARNTPCDAIVFGLIGERG  211
             +  PL TG+RAIDGLLT G GQR+GIFA+AGCGKT L+  L  +T  D +V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  212  RELREFLDHELDEELRSRTVLLCATSDRSSMeraraaftataiaeafraeGKSVLLIVDS  271
            RE+ EF+D     + + + VL+ ATSD +S++R  AA  AT++AE FR +GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  272  LTRFARAQREIglalgeppgrgglppSVYTLLPRLVERAGQTRQGAITALYSVLIEQDSM  331
            +TR+ARA R+++LA GE P+R G P+SV+  LPRL+ER+G T +G+ITA+Y+VL+E +  
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  332  NDPVADEVRSLIDGHIVLSRRLAERNHYPAIDILASLSRTMSNVVEPTHMQQAGRLRSLM  391
             DP+ADE+RS++DGH+ LSR+LA + HYPAID+L S+SR  ++V  PTH +QA+ +R LM
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  392  AAYQQVEMLIRLGEYQPGNDGLTDAAVNANDIINRFLRQSMRAPDPFEQT  441
            +  ++++++I LGEY+PG++   D A++  D ++  L Q++    +F++T
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

693) vfu_A01408 in NC_016602


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  227 bits (846),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 150/340 (45%), Positives = 233/340 (69%), Gaps = 8/340 (2%)

Query  109  LGRVVNGLGEALD----DGAPLRGGDRVSLEPKPINPLKRRPVDTPLDVGVRTINGLLTV  164
            LG V++  G  ++    + AP+     + + P +  +  R  V  PL  GVR+I+GLLT 
Sbjct  92   LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTC  149

Query  165  GKGQRIGLMAGSGVGKSVLMGMITQNTEADVIVVGLIGERGREVREFIERNLTEQARRKa  224
            G GQR+G+ A++G GK++LM M+ ++TEADV+V+GLIGERGREV EF++   + + + K 
Sbjct  150  GVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKC  209

Query  225  iiiaaPADESPLMRLRATLLCHRVAEYFRDQGKDVLLLMDSLTRYAMAQREIALSLGEPP  284
            +++ A +D +++ R  A+ L   VAEYFRDQGK V+L++DS+TRYA A R++AL+ GE P
Sbjct  210  VLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERP  269

Query  285  ASRGYPPSVFSVLPQLLERAGNSDNPDGSLSAIYTVLAEGDDQQDPVVDSARAILDGHVV  344
            A RGYP+SVF  LP+LLER+G +  ++GS++A+YTVL E++++ DP+ D  R+ILDGH+ 
Sbjct  270  ARRGYPASVFDNLPRLLERPGAT--SEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  345  LSRQLAEQGHYPAIDVNASISRCMSAVTPEAHVTVANQFRQLYANYLQVKELLPLGGYQP  404
            LSR+LA QGHYPAIDV  S+SR  + VT  +H   A+  R+L +   +++ ++ LG Y+P
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  405  GQDAELDRAVAMYPHLKAFLQQSAKERVDYTASLTQLAQL  444
            G++ + DRA+ M   LKA L Q+  +   +  +L+ +  +
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

694) USDA257_p02820 in NC_018179


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  227 bits (845),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 162/376 (44%), Positives = 256/376 (69%), Gaps = 4/376 (1%)

Query  41   RAVGTLIHAVLPEARIGELCLLQDTR--TGLSLEAEVIGLLDNGVLLTPIGGLAGLSSRA  98
            +  G +I+A L +  IGELC ++  +    +   A+V+GL  +  +L+ IG   GLS   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  99   EVVSTGRMREVPIGPDLLGRVIDSRCRPLD--GKGEVKTTEVRPLHGRAPNPMTRRMVER  156
             + +TGR     +G  +LG V+D+  + ++         +E R ++  +P+  +R  V  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  157  PFPLGVRALDGLLTCGEGQRIGIYGEPGGGKSTLISQIVKGAAADVVIVALIgergrevr  216
            P+  GVRA+DGLLTCG GQR+GI++ +G GK+ L+  ++  + ADV +++LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  217  efverHLGEEGLRRAIVVVETSDRSATERAQCAPMATALAEYFREQGLRVALLLDSLTRF  276
            EFV+   + +   + ++V  TSD ++ +R + A +AT++AEYFR+QG RV L++DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  277  CRAMREIGLAAGEPPTRRGFPPSVFAALPGLLERAGMGERGSITAFYTVLVEGDGTGDPI  336
             RA+R+++LA+GE P+RRG+P+SVF  LP LLER+G    GSITAFYTVL+E++  +DP+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  337  AEESRGIVDGHIVLSRALAARSHFPAIDVLQSRSRVMDAVVSETHRKAASFFRDLLARYA  396
            A+E R+I+DGH+ LSR LA+++H+PAIDVL+S SRV + V + TH   AS  R L++R  
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  397  ECEFLINVGEYKQGGD  412
            E +++I++GEY+ G +
Sbjct  375  ELQLFIDLGEYRPGEN  390

695) DvMF_2290 in NC_011769


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  227 bits (847),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 149/354 (43%), Positives = 248/354 (71%), Gaps = 10/354 (2%)

Query  124  VFPVGDALLGR-AFDAFGAPLDSGAHVV---TTGVAPLYA------SPPNPLARPRISDP  173
            ++P G AL ++ ++  +GA LD+ + +V   T  VAP+        +PP+  +R  + +P
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  174  LDVGVRVINSLLTLGKGQRVGIMAGSGVGKSTLMGMMARYTVADVNVIGLIGERGREVVE  233
            L  GVR I++LLT G GQR+GI A++G GK+ LM M+   T ADV VIGLIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  234  FMEKDLGPEGMARSVLIVATSDQSPLVRMRaayaatavaEFFRDQGKDVLLMMDSVTRFA  293
            F++   +++   + VL+ ATSD +++ R  AA  AT+VAE+FRDQGK V+L +DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  294  MAAREVGLAVGEPPTTKGYTPTVFAQLPKLLERAGRSEKGTITGIYTVLVDGDDFNEPIA  353
             A R+V+LA GE P+ +GY ++VF +LP+LLER+G +  G+IT++YTVL+++++  +P+A
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  354  DAVRSILDGHIVLTRDLADMGHFPAIDVLRSISRLRSDICAKNVVDAGRVITRHLATFRK  413
            D +RSILDGH+ L+R LA+ GH+PAIDVL+S+SR+ +++ +    + +  + + ++ +  
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  414  AEDMINIGAYAQGSNPDIDKAIAMNGPINAFLRQDVTDAAPLADSFAQLQGLAA  467
             +  I++G Y  G N D D+A+ M ++++A L Q V++ +++ D+++ ++++A 
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

696) fliI in NC_007677


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  227 bits (847),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 167/395 (43%), Positives = 264/395 (67%), Gaps = 2/395 (0%)

Query  26   SVVGLLVEASELDAAVGEMCRIHVAEGGETRTVRAEVVGVKESTTVLMPMEQTHGLQAGC  85
             + G ++EA   D A+GE+C I+ +        RA+VVG++   TVL  + +++GL  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  86   LIRPADEGMSVPVGPDLLGRVIDAGGRPIDGKGPLGTDAREP--IHRDPPSPLDRPLIDT  143
            ++ P++ ++S  VG  +LG V+D+ G+ ++   P  +   E   I+  PPS   R  +  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  144  PLSTGIRSIDAFLKMGKGQRTGIFAGSGVGKSTLLGMIARRAEADVNVIALIGERGREVR  203
            PL TG+R+ID++L  G GQR GIFA++G GK+ L+ M+  ++EADV VI+LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  204  EFIVDNLGEEGLRRSVLVAVTGDEaamsrvkaasaamaiaEHFRDRGQDVLLMMDSITRV  263
            EF+    + +   + VLV  T+D +++ R +AA  A ++AE FRD+G+ V+L +DS+TR 
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  264  AQAQREIGLAVGEPPTRRGYPPSVFALLPRLLERAGPAEAGTITGIFTVLVEGDDMSEPI  323
            A+A R+++LA GE P+RRGYP+SVF  LPRLLER+G++  G+IT+++TVL+E+++ ++P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  324  SDAARGILDGHIVLSRELAEAGHYPAVDVLQSVSRVMPRVasleaeaaaqearellsaYE  383
            +D  R+ILDGH+ LSR LA  GHYPA+DVL+SVSRV  +V++      A   R L++  E
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  384  EVEDLISVGAYEEGSDPETDRAVEAYPALADFLQQ  418
            E++ +I +G Y  G + + DRA++   +L   L Q
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQ  409

697) fliI in NC_014032


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  227 bits (846),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 167/395 (43%), Positives = 264/395 (67%), Gaps = 2/395 (0%)

Query  32   SVVGLLVEASELDAAVGEMCRIHVAEGGETRTVRAEVVGVKESTTVLMPMEQTHGLQAGC  91
             + G ++EA   D A+GE+C I+ +        RA+VVG++   TVL  + +++GL  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  92   LIRPADEGMSVPVGPDLLGRVIDAGGRPIDGKGPLGTDAREP--IHRDPPSPLDRPLIDT  149
            ++ P++ ++S  VG  +LG V+D+ G+ ++   P  +   E   I+  PPS   R  +  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  150  PLSTGIRSIDAFLKMGKGQRTGIFAGSGVGKSTLLGMIARRAEADVNVIALIGERGREVR  209
            PL TG+R+ID++L  G GQR GIFA++G GK+ L+ M+  ++EADV VI+LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  210  EFIVDNLGEEGLRRSVLVAVTGDEaamsrvkaasaamaiaEHFRDRGQDVLLMMDSITRV  269
            EF+    + +   + VLV  T+D +++ R +AA  A ++AE FRD+G+ V+L +DS+TR 
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  270  AQAQREIGLAVGEPPTRRGYPPSVFALLPRLLERAGPAEAGTITGIFTVLVEGDDMSEPI  329
            A+A R+++LA GE P+RRGYP+SVF  LPRLLER+G++  G+IT+++TVL+E+++ ++P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  330  SDAARGILDGHIVLSRELAEAGHYPAVDVLQSVSRVMPRVasleaeaaaqearellsaYE  389
            +D  R+ILDGH+ LSR LA  GHYPA+DVL+SVSRV  +V++      A   R L++  E
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  390  EVEDLISVGAYEEGSDPETDRAVEAYPALADFLQQ  424
            E++ +I +G Y  G + + DRA++   +L   L Q
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQ  409

698) SCD_n01230 in NC_022357


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  227 bits (845),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 151/336 (45%), Positives = 236/336 (71%), Gaps = 4/336 (1%)

Query  123  VGDELLGRILDGAGRPLDLLGP--LNLAHHVPLHSRPCNPLSRAPIRQVLDVGVRAINAL  180
            VG  +LG +LD +G+ ++ + P    ++++  ++  P +  SR  +R+ L  GVRAI++L
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  181  LTVGRGQRMGLFAGSGIGKSILLGMMARFTSADVIVVGLIGERGREVKEFIENILGPVGL  240
            LT G GQRMG+FA++G GK++L+ M+   T ADV+V+GLIGERGREV EF++ + ++   
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  241  ARSVVVAAPADTPPLLRLHGAAYATSIAEHFRDQGKHVLLIMDSLTRYAMAQREIALAIG  300
             + V+V A +D P++ R ++A  AT++AE FRDQGK+V+L++DS+TRYA A R++ALA G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  301  EPPATKGYPPSVFAKLPQLVERAGNGQAGGGSITAFYTVLVEGDDQQDPIADSARAILDG  360
            E PA +GYP+SVF +LP+L+ER+G   ++ GSITAFYTVL+E++++ DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  361  HIVLSRSLSDQGHYPAIDIEASVSRAITELLAPEDLARVRRFKLLYSRFQRSRDLISVGA  420
            H+ LSR L++QGHYPAID+  SVSR + ++ +P +  +    + L +R++  + +I +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  421  YVRGSDPLLDEAMALYPQLEAFLQQDMHQCDSYADS  456
            Y  G +   D AM +   L A L Q + Q  S+ D+
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

699) Tlie_0077 in NC_016148


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  226 bits (844),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 177/410 (44%), Positives = 279/410 (69%), Gaps = 7/410 (1%)

Query  30   NVTGIIVESIGPDVQLGDVCEIRF-RKPNQQPLKCEVVGFREERILLMPLGDLGKIGPGC  88
            ++TG I+E+   DV +G++CEIR  +  +Q   + +VVG++ ER +L  +G+   ++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  89   SVSATgrpmgvpvgggllgrvlnglgEPLD----DKGPINCTEYYPLQNDPPHPLKRKPV  144
             + +TGR+++  VG ++LG VL+  G  ++    + +PI  +E   ++  PP    R  V
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPI--SEERVIDVAPPSYASRVGV  132

Query  145  KDVLSVGIRAIDGLLTMGRGQRIGIFSGSGVGKSTILGMMARYTEADVNVIVLVGERGRE  204
            ++ L  G+RAIDGLLT G GQR+GIF+++G GK+ ++ M+   TEADV VI L+GERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  205  VQEFLNRDLKEEGMRRSVVVVATSDQPPLVRLKAALTGTAIAEYFRDRGKSVLLMMDSIT  264
            V EF++     +   + V+V ATSD P++ R +AA  +T++AEYFRD+GK V+L +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  265  RVAMAQRDVGLAVGEPPVTRGYTPSVFTFLPRLLERAGCSASGSITGIYTVLVEGDDFNE  324
            R A A RDV+LA GE P  RGY +SVF  LPRLLER+G ++ GSIT++YTVL+E+++  +
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  325  PIADAVRGILDGHIVLSRDLAVKNHYPAIDVLHSISRLMKDITSTEQQEAARSLRENLSL  384
            P+AD +R+ILDGH+ LSR LA + HYPAIDVL S+SR+  ++T+  + E A ++R  ++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  385  YQEAEELINLGAYKKGSNPRLDFAVENKDKFDKFLRQGIDERSTFEETLK  434
             +E + +I+LG Y+ G N   D A++ +D +   L Q + + S+F++TL 
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

700) fliI in NC_007650


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  226 bits (844),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 160/382 (42%), Positives = 251/382 (66%), Gaps = 7/382 (1%)

Query  56   AQVVGFNREETFLMPFKKPVGLVAGAQVLSCDRQGSLRIGRSWLGRIVNGLGEAID----  111
            AQVVG++RE T L  + ++ GL  +  + + +R  S ++G S LG +++  G  ++    
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  112  GRGPLGGDVALRAHPAPVNPLRKRPVRDTLDVGVRAIDGLLTLGRGQRVGLMAGSGVGKS  171
              +P++ +  +   P++  +  +  VR+ L  GVRAIDGLLT G GQR+G+ A++G GK+
Sbjct  109  EVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKT  166

Query  172  MLLGMITRATQADVVVVGLIGERGREVREFVDHALGEAGLAKSVLVAAPADESPLMRLKA  231
            ML+ M+   T+ADV V+GLIGERGREV EFVD   +     K VLV A +D +++ R +A
Sbjct  167  MLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNA  226

Query  232  AELCHAIAAHFRDTGANVLLLVDSLTRYAMAQREIALSVGEPPATRGYPPSVFGMLPQLV  291
            A+L  ++A  FRD G  V+L++DS+TRYA A R++AL+ GE PA RGYP+SVF+ LP+L+
Sbjct  227  AQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLL  286

Query  292  ETAGNGEGAGSMSAIYTVLAEGDDQNDPVVDTARAILDGHIVLTRELAERGHYPAIDVPR  351
            E +G + + GS++A+YTVL E++++ DP+ D  R+ILDGH+ L+R LA +GHYPAIDV +
Sbjct  287  ERPG-ATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  352  SVSRCMSQVAGAEHEALARKVKEMIGRHEQVRDLIPLGGYVQGADPATDEAVAKAARIDA  411
            SVSR  +QV+ + H   A  V+ ++ R E+++ +I LG Y  G +   D A+     + A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  412  FLRQDMRDVARRDATLAALREL  433
             L Q + + +  D TL+++  +
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAF  427

701) fliI in NC_021499


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  226 bits (843),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 163/392 (42%), Positives = 265/392 (68%), Gaps = 22/392 (5%)

Query  61   AQVVGFNRDITYLMPFKKPVGLTSGSRVFPARDQALLQIDSSWLGRVVNGLGEPLDGLGK  120
            AQVVG++R+ T L  + ++ GL+ +  ++P+ ++AL    S+W+G  V  LG  LD  GK
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPT-GRAL----SAWVGYSV--LGAVLDPTGK  101

Query  121  LAGRDPLPAELPSVNPLR-----------RRPVSEPLDVGVRAINAMLTLGKGQRVGLFA  169
            +  R  + +E+++++  R           R  V EPL  GVRAI+++LT G GQR+G+FA
Sbjct  102  IVER--FTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFA  159

Query  170  GSGVGKSVLLGMITRQTKADVVVVGLIGERGREVQEFLLHALGPEGLKKAVVVVAPANES  229
            ++G GK++L+ M+  QT ADV V+GLIGERGREV EF+    +++   K V+V A ++ +
Sbjct  160  SAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFP  219

Query  230  PLMRLKATELCHAIAAYFRDQGNDVLLLVDSLTRYAMAQREIALALGEPPATKGYPPSVF  289
            ++ R +A++L  ++A YFRDQG+ V+L++DS+TRYA A R++ALA GE PA +GYP+SVF
Sbjct  220  SVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVF  279

Query  290  GLLPELVESAGNGENDKGSLSAIYTVLAEGDDQQDPIVDCARAILDGHIVLSRRLADVGH  349
            + LP L+E +G   +  GS++A+YTVL E++++ DP+ D  R+ILDGH+ LSR+LA+ GH
Sbjct  280  DNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGH  337

Query  350  YPAIDIAASVSRCMSQVSQPRHLAAARQLKEFSGTYDKIKELIPLGGYTPGMDMKTDRAV  409
            YPAID+  SVSR  +QV+ P H   A  ++ +    + ++ +I LG Y PG ++  DRA+
Sbjct  338  YPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAM  397

Query  410  QLAPAIERFLRQDVGEGAELDACITALRGLAG  441
            Q+  ++   L Q V++ + +D  ++++ ++A+
Sbjct  398  QMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

702) BDL_5986 in NC_021877


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  226 bits (843),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 159/390 (41%), Positives = 253/390 (65%), Gaps = 23/390 (5%)

Query  56   AQVVGFNREETFLMPFKKPVGLVAGAQVLSCERQGLLRIGRS---W-----LGRIVNGLG  107
            AQVVG++RE       +  ++L++ AQ LS +   L   GR+   W     LG +++  G
Sbjct  49   AQVVGLQRE-------RTVLSLIGNAQGLSRD-VVLYPTGRALSAWVGYSVLGAVLDPTG  100

Query  108  EAID----GRGSLGGDAVLRAHPAPVNPLRKRPVRDVLDVGVRAINGLLTLGRGQRIGLM  163
              ++      ++++ + V+   P++  +  +  VR+ L  GVRAI+GLLT G GQR+G+ 
Sbjct  101  KIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTCGVGQRMGIF  158

Query  164  AGSGVGKSMLLGMITRATQADVVVVGLIGERGREVREFVDHALGEAGLAKSVLVAAPADE  223
            A++G GK+ML+ M+   T+ADV V+GLIGERGREV EFVD   +     K VLV A +D 
Sbjct  159  ASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDF  218

Query  224  SPLMRLKAAELCHAIAAHFRDTGANVLLLVDSLTRYAMAQREIALSVGEPPATRGYPPSV  283
            +++ R +AA+L  ++A  FRD G  V+L++DS+TRYA A R++AL+ GE PA RGYP+SV
Sbjct  219  PSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASV  278

Query  284  FGMLPQLVETAGNGEGAGSMSAIYTVLAEGDDQNDPVVDTARAILDGHIVLTRELAERGH  343
            F+ LP+L+E +G + + GS++A+YTVL E++++ DP+ D  R+ILDGH+ L+R LA +GH
Sbjct  279  FDNLPRLLERPG-ATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGH  337

Query  344  YPAIDVPRSVSRCMSQVAGAEHGALARKVKEMIGRHEQIRDLIALGGYVQGADPATDEAV  403
            YPAIDV +SVSR  +QV+ + H+  A  V+ ++ R E+++ +I LG Y  G +   D A+
Sbjct  338  YPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAM  397

Query  404  AKAARIDTFLRQDMLDVARHDATLAALKEL  433
                 + + L Q + + +  D TL++++ +
Sbjct  398  QMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

703) Rpdx1_3888 in NC_014834


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  226 bits (843),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 141/350 (41%), Positives = 240/350 (69%), Gaps = 11/350 (3%)

Query  92   RPSPHWLGRVVNALGEPIDGKGPLVQ--GPSPMPFRNQ------PPPAHSRKRVGAPLDL  143
            R+ + W+G   + LG  +D  G +V+   P   P+ ++      PP+  SR  V  PL  
Sbjct  81   RALSAWVG--YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  144  GVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNVDAAVSVIGLIGERGREVQEFLQ  203
            GVRA++ +LTC  GQRMGIFA++G GK++L+ ML  + +A V VIGLIGERGREV EF++
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  204  DDLGEEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDNDKDVLCLMDSVTRFAMAQ  263
               + +   + V+V ATSD P++ R +AA L+ ++AEYFRD++K V+ ++DS+TR+A A 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  264  REIGLSAGEPPTAKGYTPTVFTELPKLLERAGPGLGEGTITGIFTVLVDGDDHNEPVADA  323
            R+++L++GE P+ +GY ++VF +LP+LLER+G+  +EG+IT+++TVL++++++ +P+AD 
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGAT-SEGSITAFYTVLLESEEEADPMADE  317

Query  324  VRGILDGHIVMQRAIAERGRYPAINVLKSVSRTMPKSADPVYLPLIKRARQIMATYADME  383
            +R+ILDGH+ + R +A +G+YPAI+VLKSVSR   + + P         R++M+   +++
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  384  ELIRLGAYRPGSSAEVDEAVRLHEPLEDFLRQGKDEATSLQSGYAQLEQI  433
             +I LG YRPG + + D A++++++L   L Q   + +S++   + ++ +
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

704) lfiI in NC_009348


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  226 bits (841),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 160/383 (42%), Positives = 254/383 (67%), Gaps = 9/383 (2%)

Query  61   AEVVGFNRDISYLMPLQPMSGLYAGARVLPIDGEETIQVGEHLLGRVVDG---LLQPLDG  117
            A+VVG++R+ + L  +    GL  +  + P +   +  VG  +LG V+D    +++ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  118  RPLRDDGERVALFAIPPNPLLRTPVREPLDVGIRAINGLNGLLTVGKGQRLGLFAGSGVG  177
                   ERV   A PP+   R  VREPL  G+RAI+GL   LT G GQR+G+FA++G G
Sbjct  109  EVAPISEERVIDVA-PPSYASRVGVREPLITGVRAIDGL---LTCGVGQRMGIFASAGCG  164

Query  178  KSMLLGMMTRNTTAQIVVVGLIGERGREVREFIEHSLGPEGLARAVVVAAPADQSPLMRL  237
            K+ML+ M+  +T A++ V+GLIGERGREV EF++   +++   + V+V A +D +++ R 
Sbjct  165  KTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRC  224

Query  238  RAAQLCHRIAEYFREQGRDVLLLMDSLTRYAQAQREIVLAIGEPPATRGYPPSVFSMLTQ  297
             AAQL   +AEYFR+QG+ V+L++DS+TRYA+A R++ LA GE PA RGYP+SVF  L +
Sbjct  225  NAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPR  284

Query  298  LVERAGNGIHQDGSLSAFYTVLAEGDDQQDPVVDAARAILDGHIVLTRRLAEEGHYPAID  357
            L+ER+G     +GS++AFYTVL E++++ DP+ D  R+ILDGH+ L+R+LA +GHYPAID
Sbjct  285  LLERPGAT--SEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAID  342

Query  358  IGASVSRVMPQVVPAEWQTLAVTLRQLWGRYQQVRELLPLGGYQPGADPQMDEAVQRYPA  417
            +  SVSRV  QV  +     A ++R+L  R ++++ ++ LG Y+PG + + D A+Q   +
Sbjct  343  VLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDS  402

Query  418  IAAFLQQGIHEETPFVQVMTGLK  440
            + A L Q + + ++F + ++G++
Sbjct  403  LKAWLCQPVAQYSSFDDTLSGMN  425

705) Desgi_2227 in NC_021184


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  226 bits (841),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 175/424 (42%), Positives = 289/424 (69%), Gaps = 5/424 (1%)

Query  18   AKLLRSTGKVTKVIGLTVEAKGITAGIGQVCDIYIPGERNPVMA--EVVGFQEDSSILMP  75
            ++LL+  +   K+ G  +EA     +IG++C+I    +++ V+A  +VVG+Q + ++L  
Sbjct  4    PRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSL  63

Query  76   LGELRGIYPGCTVVPRSEAliigvgegllgrvldglgrPID--GKDLT-LRGTYSVNNPP  132
            +G+ +G+  +  + P + AL   VG ++LG VLD  G+ ++    +++ +     ++ +P
Sbjct  64   IGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAP  123

Query  133  PDPLQRKRINKIFTTGVRAIDALMTCGQGQRIGIFAGSGVGKSTILGMMARFCNADLNVI  192
            P    R  +   + TGVRAID+L+TCG GQR+GIFA++G GK+ ++ M+    +AD+ VI
Sbjct  124  PSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVI  183

Query  193  ALIGERGREVREFIENDLGPDGMKRSIVVTATSDQPALVRLKGAFVASAIAEYFRDQGKN  252
            +LIGERGREV EF++   +++   + ++V ATSD P++ R ++A +A+++AEYFRDQGK 
Sbjct  184  GLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKR  243

Query  253  VLLFMDSITRFAMAQREVGLAVGEPPATKGYTPSVFSLLPKLLERSGSSKNGTITAFYTV  312
            V+LF+DS+TR+A A R+V+LA GE PA +GY +SVF  LP+LLER+G++ +G+ITAFYTV
Sbjct  244  VVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTV  303

Query  313  LVEADDMNEPIADAVRGILDGHIVLSRELAARGHYPAIDVLNSVSRLATNLVDKNhalaa  372
            L+E+++  +P+AD +R+ILDGH+ LSR LA++GHYPAIDVL+SVSR+  ++    HA  A
Sbjct  304  LLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQA  363

Query  373  arlrhllaTYTQSEDLINIGAYVKGTSPEIDNAINKYDKILKFLLQNKDEESSFDQTLQE  432
            + +R L++   + + +I++G Y  G + + D A++  D +   L Q   + SSFD+TL  
Sbjct  364  SAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSG  423

Query  433  LLKF  436
            +  F
Sbjct  424  MNAF  427

706) fliI in NC_007778


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  225 bits (838),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 139/342 (41%), Positives = 235/342 (69%), Gaps = 9/342 (2%)

Query  92   RPSQAW-----LGRVINALGEPIDGKGPLPQGPSPMRFRNTPPPAHSRKRVG--APLDLG  144
            R+  AW     LG V+++ G  ++   P     S  R  + +PP+ +  RVG   PL  G
Sbjct  81   RALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVREPLITG  139

Query  145  VRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNVDAAVSVIGLIGERGREVQEFLQD  204
            VRA++ +LTC  GQRMGIFA++G GK++L+ ML  + +A V VIGLIGERGREV EF++ 
Sbjct  140  VRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDM  199

Query  205  DLGEEGMARSVVVVATSDEPALMRRQAAYLTLSIAEYFRDEDKDVLCLMDSVTRFAMAQR  264
              + +   + V+V ATSD P++ R +AA L+ ++AEYFRD++K V+ ++DS+TR+A A R
Sbjct  200  LRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALR  259

Query  265  EIGLSAGEPPTAKGYTPTVFTELPKLLERAGPGLGEGTISGIFTVLVDGDDHNEPVADAV  324
            +++L++GE P+ +GY ++VF +LP+LLER+G+  +EG+I++++TVL++++++ +P+AD +
Sbjct  260  DVALASGERPARRGYPASVFDNLPRLLERPGAT-SEGSITAFYTVLLESEEEADPMADEI  318

Query  325  RGILDGHIVMQRSIAERGRFPAINVLKSVSRTMPRSADPAYLPVIKRARQVMATYADMEE  384
            R+ILDGH+ + R +A +G++PAI+VLKSVSR   + + P+        R++M+   +++ 
Sbjct  319  RSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQL  378

Query  385  LIRLGAYRPGSSAEVDEAVRLHEPLEEFLRQGKDEATSLSAG  426
            +I LG YRPG + + D A++++++L   L Q   + +S+   
Sbjct  379  FIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

707) H650_14860 in NC_021500


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  225 bits (837),  Expect = 7e-60, Method: Compositional matrix adjust.
 Identities = 156/380 (42%), Positives = 253/380 (67%), Gaps = 10/380 (2%)

Query  35   ISGIVLQCYLPGARLGDLCLLPRT---SGAPIMAEVIGFDSQEVSLAALDTLEGIKPGSE  91
            I+G +++  L +  +G+LC + R          A+V+G++ +   L+ ++  +G+  +  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  92   VHPLGLPHSIQVSPALKGCVFDGFGRALGGQGQAAFVDTLTARSVPVMHNATPAT--DRL  149
            + P G + S  V+ ++ G V+D  G+ +       F   +++ S   + + +P++   R+
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIV-----ERFTPEVAPISEERVIDVAPPSYASRV  130

Query  150  CIETPLYTGLSSIDGLLTLGAGQRAGIFAGAGCGKTTLLAELARNIPCDTIVFCLTGERG  209
             +  PL TG+ +IDGLLT G GQR GIFA+AGCGKT L+  L  +   D +V+ L GERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  210  RELREFMDRELDEALRQRTVLVCATSDRSSMERVRAAFTATAIAEGFRQQGESTLLIVDS  269
            RE+ EF+D       +++ VLV ATSD +S++R  AA  AT++AE FR+QG   +L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  270  LTRLARAQREIGLANGEPPGRNGFPPSVYNLLSRLVERSGRTRQGTITALYSVLVEQDSM  329
            +TR ARA R+++LA+GE P+R G+P+SV++ L+RL+ER+G T +G+ITA+Y+VL+E +  
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  330  HDPIADEVRSLVDGHIILSRKLADQGHYPAIDVAASLSRVMNNITGTEQQTIATHIRQLM  389
             DP+ADE+RS++DGH+ LSRKLA+QGHYPAIDV  S+SRV  ++T   +   A+ +R+LM
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  390  TAYADIEMLIRLGEYQTGSD  409
            T   +++++I LGEY+ G +
Sbjct  371  TRLEELQLFIDLGEYRPGEN  390

708) AnaeK_2267 in NC_011145


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  224 bits (836),  Expect = 7e-60, Method: Compositional matrix adjust.
 Identities = 179/416 (44%), Positives = 297/416 (72%), Gaps = 7/416 (1%)

Query  26   RLTGLVLEAAVGGVRQGEAVEIRAPGREPLQ----AEVVGLRDDRAVLVPFGDLGGVGLD  81
            ++TG ++EA + +V  GE  EIR  G++  Q    A+VVGL+ +R+VL  +G+  G++ D
Sbjct  15   KITGPIIEAELRDVAIGELCEIR-RGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  82   AEVVPTGRPHTIRAgpgllgrvldglgrpld--gAPLPAGLEEWAVDRPAPNPLTRRAVA  139
              + PTGR+ + + G ++LG VLD  G+ ++   + +++  EE+ +D ++P+  +R +V 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  140  APLPLGVRVLDGLLTAGEGQRIGLFAGSGVGKSTLLGQLARGARADLCVVCLVGERGREV  199
             PL  GVR +DGLLT G GQR+G+FA++G GK+ L+  L   + AD+ V+ L+GERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  200  REFLEGPLGAEGLARSVVVAATSDAPALVRLKAAHVATAVAEWFAERGDRVLLLVDSVTR  259
             EF++   +++   + V+V ATSD P++ R +AA++AT+VAE F ++G RV+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  260  YARALREVGLAAGEPPARQGYPPSVFAALPRLLERAGNRARGGITAVYTVLVAGGDLEEP  319
            YARALR+V+LA+GE PAR+GYP+SVF  LPRLLER+G  + G+ITA YTVL+ + +  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  320  IADEVRGILDGHVVLDRAVAAGGRFPAVDPLQSLSRVMPavaapahlaaagrvrallaah  379
            +ADE+R+ILDGH+ L R +A+ G++PA+D L+S+SRV   V++P+H   A+ VR L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  380  arvrdlvalGAYRAGADPEADLALARLPAIEAFLRQPLGEAAPLEETLGRLEALAG  435
              ++ ++ LG YR+G + + D A+    ++ A L QP+++ +++++TL+ ++A+A+
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

709) D781_3942 in NC_020064


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  224 bits (836),  Expect = 7e-60, Method: Compositional matrix adjust.
 Identities = 183/425 (44%), Positives = 289/425 (68%), Gaps = 21/425 (4%)

Query  34   ISGILLECSLPRARIGDLCRITRG-EQESVLA--EVVGFNPQHTLLSALGPLDGIARG--  88
            I+G ++E  L    IG+LC I RG +Q  V+A  +VVG++ ++T+LS +G  +G++R+  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  89   ----ARVTPLWLPHSISVSEALLGSVLDGFGRPLDEQSVGAFALPGSGVDTVPVVSDAPP  144
                +R  + W+  S+      LG+VLD  G+      V  F+   + +    V+  APP
Sbjct  76   LYPTGRALSAWVGYSV------LGAVLDPTGK-----IVERFTPEVAPISEERVIDVAPP  124

Query  145  P-TARPRIAQALPTGVRAIDGLLTLGVGQRVGVFAGAGCGKTTLLAELARNTPCDAIVFG  203
            + ++R  + ++L TGVRAIDGLLT GVGQR+G+FA+AGCGKT L+  L  +T  D +V+G
Sbjct  125  SYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIG  184

Query  204  LIGERGRELREFLDHELDEALRSRTVLVCATSDRSSMeraraaftataiaeafraQGKSV  263
            LIGERGRE+ EF+D       + + VLV ATSD +S++R  AA  AT++AE FR QGK V
Sbjct  185  LIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRV  244

Query  264  LLILDSLTRFARAQREIglalgeppgrgglppSVYTLLPGLLERAGQTMTGSITALYSVL  323
            +L++DS+TR+ARA R+++LA GE P+R G P+SV+  LP LLER+G T  GSITA+Y+VL
Sbjct  245  VLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVL  304

Query  324  IEADSMNDPVADEVRSLIDGHIVLTRRLAERGHYPAIDVLASLSRTMSNVAEREQLTDAT  383
            +E++   DP+ADE+RS++DGH+ L+R+LA +GHYPAIDVL S+SR  ++V+   +  +A+
Sbjct  305  LESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQAS  364

Query  384  RLRRLMSAWQQVEMLIRLGEYEPGHDAMTDAAVEAQGAINGFLRQETRAPCAWEETLQQL  443
             +R+LM+  ++++++I LGEY PG++   D A++ ++++++ L Q      + ++TL  +
Sbjct  365  AVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

Query  444  TEVSG  448
               ++
Sbjct  425  NAFAD  429

710) B932_0338 in NC_019396


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  224 bits (834),  Expect = 9e-60, Method: Compositional matrix adjust.
 Identities = 137/320 (43%), Positives = 226/320 (71%), Gaps = 3/320 (0%)

Query  34   LGRVVDPLGAPMDGKGALIPALDQQPVLN-SPPNAATRARLGDRIDLGVRALDAFATCRR  92
            LG V+DP G  ++   + ++++ ++ V++ +PP+ A+R  + + +  GVRA+D++ TC  
Sbjct  92   LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGV  151

Query  93   GQRLGLFAGSGVGKSTLLSMLARGADCDVAVIALVGERGREVREFIEDDLGPKGLARSVV  152
            GQR+G+FA++G GK+ L+ ML   ++ DV VI+L+GERGREV EF++   ++    + V+
Sbjct  152  GQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVL  211

Query  153  VIATSDTPPLMRRDAAVSAMAIAEHFRDEGKSVLLLMDSVTRYCMALREIGLSAGEPPAT  212
            V+ATSD P++ R +AA  A ++AE FRD+GK V+L++DS+TRY  ALR+++L++GE PA 
Sbjct  212  VFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPAR  271

Query  213  RGYPPSVFADLPKLLERAGPGYPGKGMITALFTVLVEGDDHNEPVADAVRGILDGHIVLD  272
            RGYP+SVF +LP+LLER+G+   + G ITA++TVL+E++++ +P+AD +R+ILDGH+ L 
Sbjct  272  RGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLS  329

Query  273  RKIGEQGRYPAIDVLRSLSRAVPGCNSAEENRLTRQARATMATYERMADMIRLGAYKSGT  332
            RK++ QG+YPAIDVL+S+SR      ++ +   +   R  M+  E +   I LG Y++G 
Sbjct  330  RKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGE  389

Query  333  EKDVDEAIRLMPQLDTFLSQ  352
            + D D A+++   L + L Q
Sbjct  390  NIDNDRAMQMRDSLKAWLCQ  409

711) fliI in NC_005296


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  224 bits (835),  Expect = 9e-60, Method: Compositional matrix adjust.
 Identities = 140/344 (41%), Positives = 238/344 (70%), Gaps = 13/344 (3%)

Query  92   RPSPHWLGRVVNALGEPIDGKGPLVQ--GPSPMQFRNQ-----PPPAHSRKRVGM--PLD  142
            R+ + W+G   + LG  +D  G +V+   P    + ++     +PP+ +  RVG+  PL 
Sbjct  81   RALSAWVG--YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVREPLI  137

Query  143  LGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNVDAAVSVIGLIGERGREVQEFL  202
             GVRA++ +LTC  GQRMGIFA++G GK++L+ ML  + +A V VIGLIGERGREV EF+
Sbjct  138  TGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFV  197

Query  203  QDDLGEEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDNDKDVLCLMDSVTRFAMA  262
            +   + +   + V+V ATSD P++ R +AA L+ ++AEYFRD++K V+ ++DS+TR+A A
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  263  QREIGLSAGEPPTAKGYTPTVFTELPKLLERAGPGLGEGTITGIFTVLVDGDDHNEPVAD  322
             R+++L++GE P+ +GY ++VF +LP+LLER+G+  +EG+IT+++TVL++++++ +P+AD
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGAT-SEGSITAFYTVLLESEEEADPMAD  316

Query  323  AVRGILDGHIVMQRSIAERGRYPAINVLKSVSRTMPKSADPVYLPMIKRARQIMATYADM  382
             +R+ILDGH+ + R +A +G+YPAI+VLKSVSR   + + P         R++M+   ++
Sbjct  317  EIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEEL  376

Query  383  EELIRLGAYRPGSSAEVDEAVRLHEPLEDFLRQGKDEATSLQSG  426
            + +I LG YRPG + + D A++++++L   L Q   + +S++  
Sbjct  377  QLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

712) fliI in NC_011004


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  224 bits (835),  Expect = 9e-60, Method: Compositional matrix adjust.
 Identities = 140/344 (41%), Positives = 238/344 (70%), Gaps = 13/344 (3%)

Query  92   RPSPHWLGRVVNALGEPIDGKGPLVQ--GPSPMQFRNQ-----PPPAHSRKRVGM--PLD  142
            R+ + W+G   + LG  +D  G +V+   P    + ++     +PP+ +  RVG+  PL 
Sbjct  81   RALSAWVG--YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVREPLI  137

Query  143  LGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNVDAAVSVIGLIGERGREVQEFL  202
             GVRA++ +LTC  GQRMGIFA++G GK++L+ ML  + +A V VIGLIGERGREV EF+
Sbjct  138  TGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFV  197

Query  203  QDDLGEEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDNDKDVLCLMDSVTRFAMA  262
            +   + +   + V+V ATSD P++ R +AA L+ ++AEYFRD++K V+ ++DS+TR+A A
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  263  QREIGLSAGEPPTAKGYTPTVFTELPKLLERAGPGLGEGTITGIFTVLVDGDDHNEPVAD  322
             R+++L++GE P+ +GY ++VF +LP+LLER+G+  +EG+IT+++TVL++++++ +P+AD
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGAT-SEGSITAFYTVLLESEEEADPMAD  316

Query  323  AVRGILDGHIVMQRSIAERGRYPAINVLKSVSRTMPKSADPVYLPMIKRARQIMATYADM  382
             +R+ILDGH+ + R +A +G+YPAI+VLKSVSR   + + P         R++M+   ++
Sbjct  317  EIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEEL  376

Query  383  EELIRLGAYRPGSSAEVDEAVRLHEPLEDFLRQGKDEATSLQSG  426
            + +I LG YRPG + + D A++++++L   L Q   + +S++  
Sbjct  377  QLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

713) fliI in NC_021286


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  223 bits (832),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 157/376 (42%), Positives = 249/376 (67%), Gaps = 7/376 (1%)

Query  61   AEVVGFEGNISYLMPTEDAHGVIPGARVRPLNRKNQLPLGMELLGRVIDARGEPLD----  116
            A+VVG++ + + L    +A+G+  +  + P  R     +G  +LG V+D+ G  ++    
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  117  DKGPIFSDGKTYRSKPMNPLNRRQVKQPLDVGVTAINACLTVGQGQRMGLFAGSGVGKSV  176
            + +PI S+ +     P +  +R  V++PL  GV AI++ LT G GQRMG+FA++G GK++
Sbjct  109  EVAPI-SEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  177  LLGMMTRGTTADVIVVGLIGERGREVKEFIEEILGEEGREKAVVIAAPADQSPLIRLRGC  236
            L+ M+   T ADV+V+GLIGERGREV EF++ + + + +EK V++ A +D +++ R  + 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  237  ETASQVAEYFRDQGLNVLLLMDSLTRYAMAQREIALAVGEPPATKGYPPSVFAKLPALVE  296
            + A+ VAEYFRDQG  V+L++DS+TRYA A R++ALA GE PA +GYP+SVF +LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  297  RAGNGGDGQGSVTAFYTVLTEGDDLQDPIADSARAILDGHIVLNRELADSGHYPAIDIEA  356
            R+G  ++  GS+TAFYTVL E+++  DP+AD  R+ILDGH+ L+R LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  357  SISRVMPQVVSEEHMQQAIKVRQWYSSYRRNRDLISIGAYTRGSDPAIDQAIAMQPRVSM  416
            S+SRV  QV +  H +QA  VR+  +     + +I +G Y  G +   D+A+ M+  +  
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  417  FLQQKMREVVNYDESL  432
             L Q + +  ++D++L
Sbjct  406  WLCQPVAQYSSFDDTL  421

714) fliI in NC_006512


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  223 bits (832),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 157/376 (42%), Positives = 249/376 (67%), Gaps = 7/376 (1%)

Query  61   AEVVGFEGNISYLMPTEDAHGVIPGARVRPLNRKNQLPLGMELLGRVIDARGEPLD----  116
            A+VVG++ + + L    +A+G+  +  + P  R     +G  +LG V+D+ G  ++    
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  117  DKGPIFSDGKTYRSKPMNPLNRRQVKQPLDVGVTAINACLTVGQGQRMGLFAGSGVGKSV  176
            + +PI S+ +     P +  +R  V++PL  GV AI++ LT G GQRMG+FA++G GK++
Sbjct  109  EVAPI-SEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  177  LLGMMTRGTTADVIVVGLIGERGREVKEFIEEILGEEGREKAVVIAAPADQSPLIRLRGC  236
            L+ M+   T ADV+V+GLIGERGREV EF++ + + + +EK V++ A +D +++ R  + 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  237  ETASQVAEYFRDQGLNVLLLMDSLTRYAMAQREIALAVGEPPATKGYPPSVFAKLPALVE  296
            + A+ VAEYFRDQG  V+L++DS+TRYA A R++ALA GE PA +GYP+SVF +LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  297  RAGNGGDGQGSVTAFYTVLTEGDDLQDPIADSARAILDGHIVLNRELADSGHYPAIDIEA  356
            R+G  ++  GS+TAFYTVL E+++  DP+AD  R+ILDGH+ L+R LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  357  SISRVMPQVVSEEHMQQAIKVRQWYSSYRRNRDLISIGAYTRGSDPAIDQAIAMQPRVSM  416
            S+SRV  QV +  H +QA  VR+  +     + +I +G Y  G +   D+A+ M+  +  
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  417  FLQQKMREVVNYDESL  432
             L Q + +  ++D++L
Sbjct  406  WLCQPVAQYSSFDDTL  421

715) hrcN in NC_017445


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  223 bits (831),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 180/410 (44%), Positives = 284/410 (70%), Gaps = 9/410 (2%)

Query  36   ISGILIECILPGARIGDLCRIQRS-DGGSVLS--EIVGFSPEKILLSALGALDGISQGAT  92
            I+G +IE  L +  IG+LC I+R+ +   V++  ++VG+  E+ +LS +G  +G+S++  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  93   IVPLYLPHSICVSEQLLGSVLDGFGRALEPGGHSAFAEPGSQVRAVPVLNDAPPP-TERP  151
            + P   + S  V+  +LG+VLD  G+ +E      F+   + +    V++ APP+ + R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-----FTPEVAPISEERVIDVAPPSYASRV  130

Query  152  RIATPLPTGLRAIDGLLTIGNGQRVGIFAGAGCGKTTLLAELARNTPCDAIVFGLIGERG  211
             +  PL TG+RAIDGLLT G GQR+GIFA+AGCGKT L+  L  +T  D +V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  212  RELREFLDHELDEELRSRTVLLCATSDRSSMeraraaftataiaeafraeGKSVLLIVDS  271
            RE+ EF+D     + + + VL+ ATSD +S++R  AA  AT++AE FR +GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  272  LTRFARAQREIglalgeppgrgglppSVYTLLPRLVERAGQTQQGAITALYSVLIEQDSM  331
            +TR+ARA R+++LA GE P+R G P+SV+  LPRL+ER+G T +G+ITA+Y+VL+E +  
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  332  NDPVADEVRSLIDGHIVLSRRLAERNHYPAIDVLASLSRTMSNVVEPHHMMHAGRLRSLM  391
             DP+ADE+RS++DGH+ LSR+LA + HYPAIDVL S+SR  ++V  P H  +A+ +R LM
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  392  AAYQQVEMLIRLGEYQPGNDSLTDAAVNANDIINQFLRQSMRAPDPFEQT  441
            +  ++++++I LGEY+PG++   D A++  D ++  L Q++    +F++T
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

716) hrcN in NC_017390


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  223 bits (831),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 180/410 (44%), Positives = 284/410 (70%), Gaps = 9/410 (2%)

Query  36   ISGILIECILPGARIGDLCRIQRS-DGGSVLS--EIVGFSPEKILLSALGALDGISQGAT  92
            I+G +IE  L +  IG+LC I+R+ +   V++  ++VG+  E+ +LS +G  +G+S++  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  93   IVPLYLPHSICVSEQLLGSVLDGFGRALEPGGRSAFAEPGSQVRAVPVLNDAPPP-TERP  151
            + P   + S  V+  +LG+VLD  G+ +E      F+   + +    V++ APP+ + R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-----FTPEVAPISEERVIDVAPPSYASRV  130

Query  152  RIATPLPTGLRAIDGLLTIGNGQRVGIFAGAGCGKTTLLAELARNTPCDAIVFGLIGERG  211
             +  PL TG+RAIDGLLT G GQR+GIFA+AGCGKT L+  L  +T  D +V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  212  RELREFLDHELDEELRSRTVLLCATSDRSSMeraraaftataiaeafraeGKSVLLIVDS  271
            RE+ EF+D     + + + VL+ ATSD +S++R  AA  AT++AE FR +GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  272  LTRFARAQREIglalgeppgrgglppSVYTLLPRLVERAGQTQQGAITALYSVLIEQDSM  331
            +TR+ARA R+++LA GE P+R G P+SV+  LPRL+ER+G T +G+ITA+Y+VL+E +  
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  332  NDPVADEVRSLIDGHIVLSRRLAERNHYPAIDVLASLSRTMSNVVEPHHMMHAGRLRSLM  391
             DP+ADE+RS++DGH+ LSR+LA + HYPAIDVL S+SR  ++V  P H  +A+ +R LM
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  392  AAYQQVEMLIRLGEYQPGNDSLTDAAVNANDIINQFLRQSMRAPDPFEQT  441
            +  ++++++I LGEY+PG++   D A++  D ++  L Q++    +F++T
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

717) hrcN in NC_012214


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  223 bits (831),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 180/410 (44%), Positives = 284/410 (70%), Gaps = 9/410 (2%)

Query  36   ISGILIECILPGARIGDLCRIQRS-DGGSVLS--EIVGFSPEKILLSALGALDGISQGAT  92
            I+G +IE  L +  IG+LC I+R+ +   V++  ++VG+  E+ +LS +G  +G+S++  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  93   IVPLYLPHSICVSEQLLGSVLDGFGRALEPGGRSAFAEPGSQVRAVPVLNDAPPP-TERP  151
            + P   + S  V+  +LG+VLD  G+ +E      F+   + +    V++ APP+ + R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-----FTPEVAPISEERVIDVAPPSYASRV  130

Query  152  RIATPLPTGLRAIDGLLTIGNGQRVGIFAGAGCGKTTLLAELARNTPCDAIVFGLIGERG  211
             +  PL TG+RAIDGLLT G GQR+GIFA+AGCGKT L+  L  +T  D +V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  212  RELREFLDHELDEELRSRTVLLCATSDRSSMeraraaftataiaeafraeGKSVLLIVDS  271
            RE+ EF+D     + + + VL+ ATSD +S++R  AA  AT++AE FR +GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  272  LTRFARAQREIglalgeppgrgglppSVYTLLPRLVERAGQTQQGAITALYSVLIEQDSM  331
            +TR+ARA R+++LA GE P+R G P+SV+  LPRL+ER+G T +G+ITA+Y+VL+E +  
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  332  NDPVADEVRSLIDGHIVLSRRLAERNHYPAIDVLASLSRTMSNVVEPHHMMHAGRLRSLM  391
             DP+ADE+RS++DGH+ LSR+LA + HYPAIDVL S+SR  ++V  P H  +A+ +R LM
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  392  AAYQQVEMLIRLGEYQPGNDSLTDAAVNANDIINQFLRQSMRAPDPFEQT  441
            +  ++++++I LGEY+PG++   D A++  D ++  L Q++    +F++T
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

718) Alide_3854 in NC_014910


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  223 bits (832),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 173/428 (41%), Positives = 282/428 (66%), Gaps = 32/428 (7%)

Query  42   AAGLR-VPVGAQCQVRMAGQEPVL---AEVVGFAGDKAFLMPAGDIHGLSSGASVTPAAA  97
             A LR V++G  C++R + ++  +   A+VVG+  +++ L   G+ +GLS +  + P++ 
Sbjct  22   EAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGR  81

Query  98   YVPVPRLGGAGHDPEAAGAGVLRLPMGDGLLGRVVDSQGQPLDHGGPLERVTALPMDR--  155
                                 L   +G ++LG V+D+ G+ +++  P   V++++ +R  
Sbjct  82   --------------------ALSAWVGYSVLGAVLDPTGKIVERFTP--EVAPISEERVI  119

Query  156  --SPINAMERDPVREPLDTGVRAINALLTVGRGQRLGLFAGSGVGKSVLLGMMARYTQAD  213
              +P +   R  VREPL TGVRAI++LLT G GQR+G+FA++G GK++L+ M+   T+AD
Sbjct  120  DVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEAD  179

Query  214  VIVVGLIGERGREVKEFVEDILGETDRGRavvvaapadappLLRMQGAAYATAIAEHFRD  273
            V+V+GLIGERGREV EFV+ + +   + + V+V A +D P++ R ++A  AT++AE FRD
Sbjct  180  VFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRD  239

Query  274  QGRHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSCFAKLPALVERSGNGLNGVGSI  333
            QG++V+L++DS+TRYA A R++ALA GE PA +GYP+S F +LP L+ER+G    + GSI
Sbjct  240  QGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSI  297

Query  334  TAFYTVLSEGDDQQDPIADAARAILDGHIVLSRALAESGHYPAIDIEQSASRVMHNVVSR  393
            TAFYTVL E++++ DP+AD  R+ILDGH+ LSR LA  GHYPAID+ +S SRV  +V + 
Sbjct  298  TAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTP  357

Query  394  SHFDMARGFRAIYSRYQKSRDLIQVGAYMSGSDPLLDEAIRLQPGMTAFLQQDMFEAASM  453
            +H + A + R + +R +  + +I++G Y +G +   D A++++ ++ A L Q + + +S 
Sbjct  358  THAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

Query  454  DDCLAAMG  461
            DD L++M 
Sbjct  418  DDTLSGMN  425

719) Alide2_4200 in NC_015422


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  223 bits (832),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 173/428 (41%), Positives = 282/428 (66%), Gaps = 32/428 (7%)

Query  42   AAGLR-VPVGAQCQVRMAGQEPVL---AEVVGFAGDKAFLMPAGDIHGLSSGASVTPAAA  97
             A LR V++G  C++R + ++  +   A+VVG+  +++ L   G+ +GLS +  + P++ 
Sbjct  22   EAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGR  81

Query  98   YVPVPRLGGAGHDPEAAGAGVLRLPMGDGLLGRVVDSQGQPLDHGGPLERVTALPMDR--  155
                                 L   +G ++LG V+D+ G+ +++  P   V++++ +R  
Sbjct  82   --------------------ALSAWVGYSVLGAVLDPTGKIVERFTP--EVAPISEERVI  119

Query  156  --SPINAMERDPVREPLDTGVRAINALLTVGRGQRLGLFAGSGVGKSVLLGMMARYTQAD  213
              +P +   R  VREPL TGVRAI++LLT G GQR+G+FA++G GK++L+ M+   T+AD
Sbjct  120  DVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEAD  179

Query  214  VIVVGLIGERGREVKEFVEDILGETDRGRavvvaapadappLLRMQGAAYATAIAEHFRD  273
            V+V+GLIGERGREV EFV+ + +   + + V+V A +D P++ R ++A  AT++AE FRD
Sbjct  180  VFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRD  239

Query  274  QGRHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSCFAKLPALVERSGNGLNGVGSI  333
            QG++V+L++DS+TRYA A R++ALA GE PA +GYP+S F +LP L+ER+G    + GSI
Sbjct  240  QGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSI  297

Query  334  TAFYTVLSEGDDQQDPIADAARAILDGHIVLSRALAESGHYPAIDIEQSASRVMHNVVSR  393
            TAFYTVL E++++ DP+AD  R+ILDGH+ LSR LA  GHYPAID+ +S SRV  +V + 
Sbjct  298  TAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTP  357

Query  394  SHFDMARGFRAIYSRYQKSRDLIQVGAYMSGSDPLLDEAIRLQPGMTAFLQQDMFEAASM  453
            +H + A + R + +R +  + +I++G Y +G +   D A++++ ++ A L Q + + +S 
Sbjct  358  THAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

Query  454  DDCLAAMG  461
            DD L++M 
Sbjct  418  DDTLSGMN  425

720) vfu_A01193 in NC_016602


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  223 bits (830),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 158/394 (41%), Positives = 258/394 (66%), Gaps = 12/394 (3%)

Query  42   PIGSLCKVQTMSGEME----AEVVGFSGDSLFLMPSEQITGVLPGAKVTPLTEEAGLSVG  97
            +IG LC ++    + +    A+VVG+  +   L    +  G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  98   MELLGRVIDGVGNPLD----GLGPIYTDQRASFNAQPINPLARKPISEPLDVGIKAINGL  153
              +LG V+D  G+ ++     ++PI +++R  ++  P +  +R  + EPL  G++AI+GL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPI-SEERV-IDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  154  LTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGVDGR  213
            LT G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGREV EF++ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  214  QRsvvvaapadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVG  273
            ++ V+V A +D +++ R ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  274  EPPATKGYPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTEGDDLQDPIADASRAILDG  333
            E PA +GYP+SVF +LP L+ER+G  +  +GSITAF+TVL E+++  DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATS--EGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  334  HIVLSREMADAGHYPAIDVEKSVSRVMPQITTDEHVLMSKAVRQILSICRKNQDLVSIGA  393
            H+ LSR +A+ GHYPAIDV KSVSRV  Q+TT  H   + AVR++++     Q ++ +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  394  YKPGTDQAIDSAFTLKPKLDNYLQQGMKDSVPYE  427
            Y+PG +   D A  ++  L   L Q + +  +++
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

721) Thena_0176 in NC_015499


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  222 bits (828),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 156/376 (42%), Positives = 252/376 (68%), Gaps = 6/376 (1%)

Query  24   DKISGYVIESIGPKVSIGEIVYIDSGKSQIPCL----VIGFSSNKVYLTPFDAIEGIEPG  79
            +KI+G +IE+    V+IGE+  I  G  Q   +    V+G+  ++  L+ ++  +G+  +
Sbjct  14   QKITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  80   SIVKKTGKQLGLWVGKHLLGQVLDGLGRPLSDEYI-QRDDMSQYRSIENKSPHPLKRGRI  138
             ++  TG+ L+ WVG  +LG VLD  G+ + + +  +   +S+ R I+  +P    R  +
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGK-IVERFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  139  REPISTGIRAIDGLLTLGKGQRVGIFAGSGIGKTTLLGMISRFCNAQVNIIALVGERGRE  198
            REP+ TG+RAIDGLLT G GQR+GIFA++G GKT L+ M+    +A+V +I+L+GERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  199  VREFLEESLGEDGLAKSVVIVSTSDNPPSQRVLSAFTATVIAEYFRDLGMDVLMVMDSLT  258
            V EF++   + +   K V++ +TSD P+ +R  +A  AT +AEYFRD G  V++ +DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  259  RVCMAQRELGLSIGEPPTTRGYPPSVFTMMARLLERAGTSDKGSITGIYTVLVEGDDLAE  318
            R   A R+++L+ GE P+ RGYP+SVF  ++RLLER+G++  GSIT++YTVL+E+++ A+
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEAD  312

Query  319  PIADHARSILDGHIVLSRDLAERGYYPPIDISQSVSRLMNSITDKDHLNLSYRIKELIAS  378
            P+AD+ RSILDGH+ LSR LA +G YP+ID+ +SVSR+   +T   H + +  ++ L++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  379  YKEAYDLINIGAYQKG  394
              E   +I++G Y+ G
Sbjct  373  LEELQLFIDLGEYRPG  388

722) VEA_001189 in NC_013457


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  222 bits (826),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 146/340 (43%), Positives = 233/340 (69%), Gaps = 8/340 (2%)

Query  109  LGRVLNGLGEPLD----DGAPLKGGDRVSLEPKPINPLKRRPVDTPLNVGVRAINGLLTV  164
            LG VL+  G  ++    + AP+     + + P +  +  R  V  PL  GVRAI+GLLT 
Sbjct  92   LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTC  149

Query  165  GKGQRIGLMAGSGVGKSVLMGMITKNTEADVIVVGLIGERGREVREFIERNLTPEARKKa  224
            G GQR+G+ A++G GK++LM M+  +TEADV+V+GLIGERGREV EF++   +++ + K 
Sbjct  150  GVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKC  209

Query  225  iiiaaPADESPLMRLRATLLCHRVSEYFRDQGKDVLLLMDSLTRYAMAQREIALSLGEPP  284
            +++ A +D +++ R  A+ L   V+EYFRDQGK V+L++DS+TRYA A R++AL+ GE P
Sbjct  210  VLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERP  269

Query  285  ASRGYPPSVFSVLPQLLERAGNSENQHGSLTAIYTVLAEGDDQQDPVVDSARAILDGHVV  344
            A RGYP+SVF  LP+LLER+G + +  GS+TA+YTVL E++++ DP+ D  R+ILDGH+ 
Sbjct  270  ARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  345  LSRQLAEQGHYPAIDINASISRCMSTCTQEAHSTIANNFRQMYSNYLQVKELLPLGGYQP  404
            LSR+LA QGHYPAID+  S+SR  +  T  +H+  A+  R++ +   +++ ++ LG Y+P
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  405  GQDPELDQSVAMYPNLRAYLQQAANESVDYPTSLTELAQL  444
            G++ + D+++ M  +L+A L Q+  +   +  +L+ +  +
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

723) fliI in NC_007645


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  222 bits (826),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 169/406 (42%), Positives = 275/406 (68%), Gaps = 15/406 (3%)

Query  41   MTLGERCLIEVRGGR-----MVEAEVVGFSDERVYLMPLAAVEGLQPGAKVKPMSGVGRI  95
            +++GE C  E+R G+     +  A+VVG+  ER  L  ++  +GL  +  + P +     
Sbjct  28   VAIGELC--EIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSA  85

Query  96   GVGACLLGRVLDGAGEPLD----GRGPLQAEHHVELFGAPINPLHRAPIREKLDVGIRAI  151
             VG  +LG VLD +G  ++      +P+  E+ +++  AP +   R  +RE L  G+RAI
Sbjct  86   WVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDV--APPSYASRVGVREPLITGVRAI  143

Query  152  NSLLTVGIGQRLGLFAGSGVGKSMLLGMMTRFTTADIIvvglvgergrevKEFIEDILGE  211
            ++LLT G+GQR+G+FA++G GK+ML+ M+   T AD++V+GL+GERGREV EF++ + + 
Sbjct  144  DGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRAS  203

Query  212  EGLRRAVVVASPADDSPLMRLRAAVLTTRIAEYFRDLGKNVLLLMDSLTRYAQAQREIAL  271
            +   + V+V + +D +++ R  AA L+T +AEYFRD GK V+L++DS+TRYA+A R++AL
Sbjct  204  HKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVAL  263

Query  272  AVGEPPATKGYPPSVFAKLPQLVERAGNGKPGGGSITAFYTVLTEGDDQQDPIADAARAI  331
            A GE PA +GYP+SVF +LP+L+ER+G    + GSITAFYTVL E++++ DP+AD  R+I
Sbjct  264  ASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPMADEIRSI  321

Query  332  LDGHIVLNRRLAEEGHYPAIDVEASISRVMPQVTTPDYLQRAQRFKQLYARYQQTRDLIS  391
            LDGH+ L+R+LA +GHYPAIDV  S+SRV  QVTTP   ++A   ++L +R ++ + +I 
Sbjct  322  LDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFID  381

Query  392  VGAYAPGSDKETDYAIERFPHMRKFLQQSLRERATLNDSAQGLNQL  437
            +G Y PG + + D A++    ++  L Q++ + ++++D+  G+N +
Sbjct  382  LGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

724) fliI in NC_015856


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  222 bits (827),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 141/346 (41%), Positives = 238/346 (69%), Gaps = 8/346 (2%)

Query  134  GAGMLGRVVDAAGRPLDGLGP--LDFSREVPLSAAPINPLARAPIDSVLDVGVRAINALL  191
            G ++LG V+D++G+ ++ + P    +S E  +  AP +  +R  +   L  GVRAI++LL
Sbjct  88   GYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  192  TVGRGQRMGLFAGSGVGKSVLLGMMARYTSAEVIIVGLIGERGREVKDFIENTLGVEGLA  251
            T G GQRMG+FA++G GK++L+ M+   T A+V+++GLIGERGREV +F++   + +   
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  252  RAVVVAAPADTSPLLRLQGAAYATSLAEYFRDQGKDVLLIMDSLTRYAMAQREIALAVGE  311
            + V+V A +D +++ R ++A  AT++AEYFRDQGK V+L++DS+TRYA A R++ALA GE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  312  PPATKGYPPSVFAKLPALVERAGNGARDASGKGGAITAFYTVLTEGDDQQDPIADAARAI  371
             PA +GYP+SVF +LP L+ER+G  +       G+ITAFYTVL E++++ DP+AD  R+I
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATS------EGSITAFYTVLLESEEEADPMADEIRSI  321

Query  372  LDGHVVLSRSLAESGHYPAIDIEASISRAMTSLIEPGQFDAVRRFKQMLSRYQRNRDLIS  431
            LDGH+ LSR LA  GHYPAID+  S+SR    +  P + +     +++++R +  + +I 
Sbjct  322  LDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFID  381

Query  432  VGAYAAGHDLQLDKAIALYPKIEAFLQQGMAERAGYLEAVAQLEQL  477
            +G Y +G++++ D+A+ +   + A L Q +A+ +++ ++++ ++ +
Sbjct  382  LGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

725) Thivi_0361 in NC_018012


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  222 bits (825),  Expect = 5e-59, Method: Compositional matrix adjust.
 Identities = 164/378 (44%), Positives = 255/378 (68%), Gaps = 12/378 (3%)

Query  76   AEVVGFQGERTFLMPEGKLEGLIPGARIEPLEQSRRIPVGPELLGRVIDAlgrpldgggp  135
            A+VVG+Q ERT L   G+ +GL  +  + P  ++    VG  +LG V+D+ G+ ++    
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERF--  106

Query  136  lrTQELVPL-EGRPINPL-----TRAPVRQPLDVGIRTLNGLLSVGRGQRLGLFAGSGVG  189
              T E+ P+ E R I+       +R  VR+PL  G+R+++GLL+ G GQR+G+FA++G G
Sbjct  107  --TPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCG  164

Query  190  KSVLLGMMTKHTEADVIVVGLIGERGREVNEFIQDILDDESRRRTVVVAVPADQSPLLRQ  249
            K++L+ M+  +TEADV+V+GLIGERGREV EF++ +   + + + V+V   +D +++ R 
Sbjct  165  KTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRC  224

Query  250  HGAWVSTTVAEYFRDRGLNVLLLMDSLTRFAQGAREIAMAIGEPPATKGYSASVFARLPQ  309
            ++A ++TTVAEYFRD+G  V+L++DS+TR+A++ R++A+A GE PA +GY+ASVF  LP+
Sbjct  225  NAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPR  284

Query  310  LVERAGNGDHGGGSITAFYTVLAEGDDQNDPIVDSARAILDGHVVLSREIAESGRYPAID  369
            L+ER+G    + GSITAFYTVL E++++ DP+ D  R+ILDGH+ LSR +A  G+YPAID
Sbjct  285  LLERPGAT--SEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAID  342

Query  370  vsasvsrvmsavvTPEHQRAAYRFRSLMSTYARNRDLIAVGAYRKGSDPQLDEAVAMNPR  429
            V  SVSRV + V TP H   A   R LM+     + +I +G YR G + + D A+ M   
Sbjct  343  VLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDS  402

Query  430  LESYLGQNRTEAASFEQS  447
            L + L Q  ++ +SF+++
Sbjct  403  LKAWLCQPVAQYSSFDDT  420

726) fliI in NC_004463


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  222 bits (825),  Expect = 5e-59, Method: Compositional matrix adjust.
 Identities = 142/343 (42%), Positives = 238/343 (70%), Gaps = 11/343 (3%)

Query  92   RPSTAWLGRVVNALGEPIDGKGPLPQGSSP--MPFRN------TPPPAHSRKRVGSPLDL  143
            R+ +AW+G   + LG  +D  G + +  +P   P+ +      +PP+  SR  V  PL  
Sbjct  81   RALSAWVG--YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  144  GVRAMNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNVDAAVSVIGLIGERGREVQEFLQ  203
            GVRA++ +LTC  GQRMGIFA++G GK++L+ ML  + +A V VIGLIGERGREV EF++
Sbjct  139  GVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  204  DDLGEEGLARSVVVVATSDEPALMRRQAAYLTLAVAEYFRDEDKDVLCLMDSVTRFAMAQ  263
               + +   + V+V ATSD P++ R +AA L+ +VAEYFRD++K V+ ++DS+TR+A A 
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  264  REIGLSAGEPPTAKGYTPTVFTELPKLLERAGPGLGEGAITAIFTVLVDGDDHNEPIADA  323
            R+++L++GE P+ +GY ++VF +LP+LLER+G+  +EG+ITA++TVL++++++ +P+AD 
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLERPGAT-SEGSITAFYTVLLESEEEADPMADE  317

Query  324  VRGILDGHIVMQRSIAERGRYPAINILKSVSRTMPKSADPEFWPTIQKARQVMATYADME  383
            +R+ILDGH+ + R +A +G+YPAI++LKSVSR   + + P         R++M+   +++
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  384  ELIRLGAYRAGSSPEVDEAIRLHEPLEGFLRQRKDENASLADG  426
             +I LG YR+G + + D A++++++L + L Q   + +S+ D 
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

727) Vapar_2274 in NC_012791


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  222 bits (826),  Expect = 5e-59, Method: Compositional matrix adjust.
 Identities = 171/409 (42%), Positives = 259/409 (64%), Gaps = 18/409 (4%)

Query  37   DAAVGELCRIMVRSHggpaeggaapaSVLAEVVGLKPGRVTLMPYGPVEGIAAGCEVHAL  96
            D A+GELC I    H     +        A+VVGL+  R  L   G  +G++ +  + + 
Sbjct  27   DVAIGELCEIRRGWHQKQVVAR-------AQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  97   GADSQIGVGPAMLGRVIDGFGEPLDGLPKPVA--IQRRPLKAAPINPMQRPPIRRILETG  154
            G      VG ++LG V+D  G  ++ +   VA   + R +  AP +   R  +R  L TG
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITG  139

Query  155  VRAIDGLLTLGQGQRIGIFAGSGVGKSTLLGLLARHVKAQGGADGSGGINVIALIGERGR  214
            VRAIDGLLT G GQR+GIFA++G GK+ L+ +L  +  A+        + VI+LIGERGR
Sbjct  140  VRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEAD--------VFVIGLIGERGR  191

Query  215  EVREFIEKQLGPEGLARSVVVVATSDQPalarlraayaalSIAEYFRDEGRNVLLTMDSI  274
            EV EF++   +++   + V+V ATSD P++ R  AA  A ++AEYFRD+G+ V+L +DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  275  TRFAMARREVGLSAGEPPTARGYTPSVFAELPELCERCGMAPGGGSITALLTVLVEGDDL  334
            TR+A A R+V+L++GE P+ RGY +SVF +LP L ER G A + GSITA+ TVL+E+++ 
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPG-ATSEGSITAFYTVLLESEEE  310

Query  335  NEPVSDALRAILDGHIVLSRQLAHRGHYPAIDVLKSVSRLMPELADEAQRSLAVAAMQHL  394
             +P++D +R+ILDGH+ LSR+LA +GHYPAIDVLKSVSR+  +++  ++   A A  + +
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  395  AVLERNRQMIDIGAYEKGANAELDRAIDTEPGLQAWLRQSVGGVGRMEA  443
            + LE  +  ID+G Y  G N + DRA++   +L+AWL Q+V+  +  + 
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

728) Tbd_1091 in NC_007404


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  221 bits (822),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 154/345 (45%), Positives = 244/345 (71%), Gaps = 8/345 (2%)

Query  122  VGDSLLGRVLDGAGRPLD----GIGPLSLERRVPLYSRPINPLERAPIRETLDVGVRAIN  177
            VG S+LG VLD +G+ ++     ++P+S ER + + + +  +  R  +RE L  GVRAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAID  144

Query  178  GLLTVGRGQRLGLFAGSGVGKSVLLGMMARMTEADVVVVGLIGERGREVKEFIDRILGAE  237
            GLLT G GQR+G+FA++G GK++L+ M+   TEADV V+GLIGERGREV EF+D + +++
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  238  GMaravvvaapaDHPPLMRLNGAAYAMSIAEYFRDQGKHVLLIMDSLTRYAMAQREVALA  297
               + V+V A +D P++ R N+A  A ++AEYFRDQGK+V+L++DS+TRYA A R+VALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  298  IGEPPATKGYPPSVFAKLPQLAERAGNGRSGSGSITAFFTVLMEGDDQQDPIADAARAIL  357
             GE PA +GYP+SVF +LP+L ER+G   ++ GSITAF+TVL+E++++ DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPMADEIRSIL  322

Query  358  DGHIVLSRDLADAGHYPAIDIEASISRAQPDLLTEEALERTRRFKYLYSRYMRSRDLLAV  417
            DGH+ LSR LA+ GHYPAID+  S+SR   ++ T    E++   + L +R    + ++ +
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  418  GAYVPGADVVLDEGVRLYPRMQGYLMQGMREQASLDAARDGLEGI  462
            G Y PG ++  D ++++   +++ L Q + + +S+D +  G++++
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

729) rhcN in NC_000914


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  221 bits (822),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 173/408 (43%), Positives = 274/408 (68%), Gaps = 4/408 (0%)

Query  41   RAVGTLIHAVLPEARIGELCLLQDTR--TGLSLEAEVIGLLDNGVLLTPIGGLAGLSSRA  98
            +  G +I+A L +  IGELC ++  +    +   A+V+GL  +  +L+ IG   GLS   
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  99   EVVSTGRMREVPIGPDLLGRVIDSRCRPLD--GKGEVKTTEVRPLHGRAPNPMTRRMVER  156
             + +TGR     +G  +LG V+D+  + ++         +E R ++  +P+  +R  V  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  157  PFPLGVRALDGLLTCGEGQRIGIYGEPGGGKSTLISQIVKGAAADVVIVALIgergrevr  216
            P+  GVRA+DGLLTCG GQR+GI++ +G GK+ L+  ++  + ADV +++LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  217  efverHLGEEGLRRAIVVVETSDRSATERAQCAPMATALAEYFREQGLRVALLLDSLTRF  276
            EFV+   + +   + ++V  TSD ++ +R + A +AT++AEYFR+QG RV L++DS+TR+
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  277  CRAMREIGLAAGEPPTRRGFPPSVFaalpglleraglgergSITAFYTVLVEGDGTGDPI  336
             RA+R+++LA+GE P+RRG+P+SVF  LP LLER+G    GSITAFYTVL+E++  +DP+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  337  AEESRGILDGHIVLSRALAARSHFPAIDVLQSRSRVMDAVVSETHRKAASFFRDLLARYA  396
            A+E R+ILDGH+ LSR LA+++H+PAIDVL+S SRV + V + TH   AS  R L++R  
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  397  ECEFLINVGEYKQGGDPLTDRAVASIGELKEFLRQSEDEVSDFEETVG  444
            E +++I++GEY+ G +   DRA+   + LK  L Q+  + S F++T++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLS  422

730) Amir_2344 in NC_013093


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  221 bits (824),  Expect = 6e-59, Method: Compositional matrix adjust.
 Identities = 151/343 (45%), Positives = 238/343 (70%), Gaps = 2/343 (0%)

Query  85   STNRPLQIAVGEQLRGRVLDGLGRPMDGGPPLVG--LESVTVDMTPPSALQRQLIDKPLQ  142
            +T R+L   VG  + G VLD  G+ ++   P V+   E   +D++PPS   R  +  PL 
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLI  137

Query  143  LGVRALDTMVPCGQGQRIGIFAGSGVGKSSLLSMITRGTEAEITVVALIGERGREVREFI  202
             GVRA+D ++ CG GQR+GIFA++G GK+ L+ M+   TEA++ V++LIGERGREV EF+
Sbjct  138  TGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFV  197

Query  203  ENDLGPEGLARSVVVVATSDQPPMVRLRAGFVATRIAEWYRDRGANALLMMDSLTRIAMA  262
            +   +++   + V+V ATSD P++ R  A+ +AT +AE +RD+G   +L +DS+TR A A
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  263  QREVGLSAGEPPATRGFPPSVFALMPTLLERAGPAERGSITGLYTVLVEGDDHNEPIADT  322
             R+V+L++GE PA RG+P+SVF  +P LLER+G++  GSIT++YTVL+E++++ +P+AD 
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADE  317

Query  323  ARSILDGHVVLDRRLATSGHFPSIDVLESVSRVTGAVTTPeqradaaqlrrllaarrdvr  382
             RSILDGH+ L R+LA  GH+P+IDVL SVSRV G VTTP +  +A+ +R+L++   +++
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  383  elvEIGAYVGGTNLDADRAMALEPRINGLLTQDIHARTSAESS  425
             ++++G Y  G N+D DRAM +   +++ L Q +   +S + +
Sbjct  378  LFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

731) N646_3251 in NC_022359


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  221 bits (824),  Expect = 6e-59, Method: Compositional matrix adjust.
 Identities = 146/340 (43%), Positives = 232/340 (69%), Gaps = 8/340 (2%)

Query  109  LGRVLNGLGEPLD----DGAPLKGGDRVSLEPKPINPLKRRPVDTPLNVGVRAINGLLTV  164
            LG VL+  G  ++    + AP+     + + P +  +  R  V  PL  GVRAI+GLLT 
Sbjct  92   LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTC  149

Query  165  GKGQRIGLMAGSGVGKSVLMGMITKNTEADVIVVGLIGERGREVREFIERNLTPEARKKa  224
            G GQR+G+ A++G GK++LM M+  +TEADV+V+GLIGERGREV EF++   +++ + K 
Sbjct  150  GVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKC  209

Query  225  iiiaaPADESPLMRLRATLLCHRVSEYFRDQGKDVLLLMDSLTRYAMAQREIALSLGEPP  284
            +++ A +D +++ R  A+ L   V+EYFRDQGK V+L++DS+TRYA A R++AL+ GE P
Sbjct  210  VLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERP  269

Query  285  ASRGYPPSVFSVLPQLLERAGNSENQHGSLTAIYTVLAEGDDQQDPVVDSARAILDGHVV  344
            A RGYP+SVF  LP+LLER+G + +  GS+TA+YTVL E++++ DP+ D  R+ILDGH+ 
Sbjct  270  ARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  345  LSRQLAEQGHYPAIDINASISRCMNTCTQDAHSTIANNFRQMYSNYLQVKELLPLGGYQP  404
            LSR+LA QGHYPAID+  S+SR     T  +H+  A+  R++ +   +++ ++ LG Y+P
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  405  GQDPELDQSVAMYPNLRAYLQQAANESVDYPTSLTELAQL  444
            G++ + D+++ M  +L+A L Q+  +   +  +L+ +  +
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

732) fliI in NC_021884


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  221 bits (824),  Expect = 7e-59, Method: Compositional matrix adjust.
 Identities = 148/345 (43%), Positives = 239/345 (70%), Gaps = 8/345 (2%)

Query  124  VGWEMLGRVVDASGRPLDNLGPLASKVDAP----LTAPSINPLDREPIHHVLDVGVRAIN  179
            VG  +LG V+D++G+ ++ + P  + +       +++PS  +  R  +++ L  GVRAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAID  144

Query  180  GLLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGED  239
            GLLT G GQRMG+FA++G GK++L+  +   T A+V+VIGLIGERGREV EF++ + + +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  240  GLarsvvvaapadvspLLRMQGAAYATTLAEYFRDQGKHVLLLMDSLTRYAMAQREIALA  299
               + V+V A +D +++ R ++A  ATT+AEYFRDQGK+V+L++DS+TRYA A R++ALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  300  IGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAIL  359
             GE PA +GYP+SVF +LP L+ER G  +EG  SITAFYTVL E++++ DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSEG--SITAFYTVLLESEEEADPMADEIRSIL  322

Query  360  DGHVVLSRSLAEAGHYPAIDIEASISRAMTALIDDAHLDRVRQFKQMLSRYQRNRDLIAV  419
            DGH+ LSR LA  GHYPAID+  S+SR    +   +H ++    +++++R +  + +I +
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  420  GAYAPGRDAQLDRAIALYPRIESFLQQGFRECAPYAPSLAALDAL  464
            G Y PG + + DRA+ +   + + L Q   + +++  +L++++A+
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

733) Adeh_1596 in NC_007760


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  221 bits (822),  Expect = 8e-59, Method: Compositional matrix adjust.
 Identities = 179/415 (44%), Positives = 293/415 (71%), Gaps = 5/415 (1%)

Query  26   RLTGLVLEAAVGGVRQGEAVELRAPGREPLL---AEVVGLRDDRAVLVPFGELGGVGLDA  82
            ++TG ++EA + +V  GE  E+R   ++  +   A+VVGL+ +R+VL  +G+  G++ D 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  83   EVIPTGRPHAIRvgpgllgrvldglgrpld--gAPLPAGLEEWAVDrpapnplarrpvaa  140
             + PTGR+ + +VG ++LG VLD  G+ ++   + +++  EE+ +D ++P+  +R  V  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  141  plplGVRVLDGLLTAGEGQRIGLFAGSGVGKSTLLGQLARGARADLCVVCLVGERGREVR  200
            PL  GVR +DGLLT G GQR+G+FA++G GK+ L+  L   + AD+ V+ L+GERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  201  EFLEGPLGADGLARSVVVAATSDAPALVRLKAAHVATAVAEWFAERGDRVLLLVDSVTRY  260
            EF++   +++   + V+V ATSD P++ R +AA++AT+VAE F ++G RV+L++DS+TRY
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  261  ARALREVGLAAGEPPARQGYPPSVFAALPRLLERAGNRARGGITAVYTVLVAGGDLEEPI  320
            ARALR+V+LA+GE PAR+GYP+SVF  LPRLLER+G  + G+ITA YTVL+ + +  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  321  ADEVRGILDGHVVLDRAVAAGGRFPAVDPLQSLSRVMPAVAGPDHlaaagrvrallaaha  380
            ADE+R+ILDGH+ L R +A+ G++PA+D L+S+SRV   V+ P H   A+ VR L++   
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  381  rvrdlvalGAYRAGGDPEADLALARLPALEAFLRQPLGEPAPFEETLRRLEALAG  435
             ++ ++ LG YR+G + + D A+    +L A L QP+++ ++F++TL  ++A+A+
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

734) bgla_1g37720 in NC_015381


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  220 bits (821),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 149/345 (44%), Positives = 243/345 (71%), Gaps = 8/345 (2%)

Query  130  VGWQMLGRVVDASGRPLDRL----GPLASELDAPLSAPTINPLEREPIHHVLDVGVRAIN  185
            VG  +LG V+D++G+ ++R+    +P++ E    +++P+  +  R  +++ L  GVRAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAID  144

Query  186  ALLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGED  245
            +LLT G GQRMG+FA++G GK++L+  +   T A+V+VIGLIGERGREV EF++ + + +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  246  GLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQREIALA  305
               + V+V A +D +++ R ++A  AT++AEYFRDQGK+V+L++DS+TRYA A R++ALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  306  IGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAIL  365
             GE PA +GYP+SVF +LP L+ER G  +EG  SITAFYTVL E++++ DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSEG--SITAFYTVLLESEEEADPMADEIRSIL  322

Query  366  DGHIVLSRQLAEAGHYPAIDIEQSISRAMTSLIDERHLDRVRRFKQMLSRYQRNRDLIAV  425
            DGH+ LSR+LA  GHYPAID+ +S+SR    +    H ++    +++++R +  + +I +
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  426  GAYAAGRDAQLDRAIALYPRIEAFLQQGFRECAPFESCLAGLDAL  470
            G Y +G + + DRA+ +   + A L Q   + ++F+  L+G++A+
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

735) PSTAA_0179 in NC_017532


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  220 bits (820),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 163/388 (43%), Positives = 255/388 (66%), Gaps = 18/388 (4%)

Query  61   AQVVGFNRDITYLMPFKKPVGLTAGSRVFPAPDDAKLHIDESWLGRVVNGLGEPLDELGK  120
            AQVVG++R+ T L  + ++ GL+ +  ++P+          +W+G  V  LG  LD  GK
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALS-----AWVGYSV--LGAVLDPTGK  101

Query  121  LGGR-----DPLPTE-LPSVNP---LKRKPVSEALDVGVRAINATLTLGKGQRVGLFAGS  171
            +  R      P++ E +  V P     R  V E+L  GVRAI++ LT G GQR+G+FA++
Sbjct  102  IVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASA  161

Query  172  GVGKSVLLGMITRQTKADVVVVGLIGERGREVQEFLLHSLGEEGLKKAVVVVAPANESPL  231
            G GK++L+ M+  QT ADV V+GLIGERGREV EF+    + +   K V+V A ++ +++
Sbjct  162  GCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSV  221

Query  232  MRLKATELCHSIAAYFRDQGHDVLLLVDSLTRYAMAQREIALALGEPPATKGYPPSVFGM  291
             R +A++L  ++A YFRDQG  V+L++DS+TRYA A R++ALA GE PA +GYP+SVF+ 
Sbjct  222  DRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDN  281

Query  292  LPELVESAGNGASDNGSLSAIYTVLAEGDDQQDPIVDCARAILDGHIVLSRRLAEAGHYP  351
            LP L+E +  GA+ +GS++A+YTVL E++++ DP+ D  R+ILDGH+ LSR+LA  GHYP
Sbjct  282  LPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYP  339

Query  352  AIDVCASVSRCMSQVGQPAHLGAARQLKECYSTFEKIKELIPLGGYTPGADIKTDRAVQL  411
            AIDV  SVSR  +QV  P+H   A  ++   + +E ++ +I LG Y PG +I  DRA+Q+
Sbjct  340  AIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQM  399

Query  412  APTIERFLRQDVGEAAELETSVATLQNI  439
              ++   L Q V++ + ++ +++ ++ +
Sbjct  400  RDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

736) Psest_4169 in NC_019936


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  220 bits (820),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 163/388 (43%), Positives = 255/388 (66%), Gaps = 18/388 (4%)

Query  61   AQVVGFNRDITYLMPFKKPVGLTAGSRVFPAPDDAKLHIDESWLGRVVNGLGEPLDELGK  120
            AQVVG++R+ T L  + ++ GL+ +  ++P+          +W+G  V  LG  LD  GK
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALS-----AWVGYSV--LGAVLDPTGK  101

Query  121  LGGR-----DPLPTE-LPSVNP---LKRKPVSEALDVGVRAINATLTLGKGQRVGLFAGS  171
            +  R      P++ E +  V P     R  V E+L  GVRAI++ LT G GQR+G+FA++
Sbjct  102  IVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASA  161

Query  172  GVGKSVLLGMITRQTKADVVVVGLIGERGREVQEFLLHSLGEEGLKKAVVVVAPANESPL  231
            G GK++L+ M+  QT ADV V+GLIGERGREV EF+    + +   K V+V A ++ +++
Sbjct  162  GCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSV  221

Query  232  MRLKATELCHSIAAYFRDQGHDVLLLVDSLTRYAMAQREIALALGEPPATKGYPPSVFGM  291
             R +A++L  ++A YFRDQG  V+L++DS+TRYA A R++ALA GE PA +GYP+SVF+ 
Sbjct  222  DRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDN  281

Query  292  LPELVESAGNGASDNGSLSAIYTVLAEGDDQQDPIVDCARAILDGHIVLSRRLAEAGHYP  351
            LP L+E +  GA+ +GS++A+YTVL E++++ DP+ D  R+ILDGH+ LSR+LA  GHYP
Sbjct  282  LPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYP  339

Query  352  AIDVCASVSRCMSQVGQPAHLGAARQLKECYSTFEKIKELIPLGGYTPGADIKTDRAVQL  411
            AIDV  SVSR  +QV  P+H   A  ++   + +E ++ +I LG Y PG +I  DRA+Q+
Sbjct  340  AIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQM  399

Query  412  APTIERFLRQDVGEAAELETSVATLQNI  439
              ++   L Q V++ + ++ +++ ++ +
Sbjct  400  RDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

737) Noca_0756 in NC_008699


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  220 bits (819),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 151/364 (42%), Positives = 250/364 (69%), Gaps = 2/364 (0%)

Query  71   LGDTTGLRVGDHVVNHGEGLRIPVGEALRGRVLDGLGRPMDD-GPALDDLPTV-VVDNLP  128
            +G++ GL  +  +   G +L   VG ++ G VLD  G+ ++   P +  ++   V+D  P
Sbjct  64   IGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAP  123

Query  129  PAALSRPRIDQQLGLGVRAMDALISCGRGQRLGIMAGSGVGKSSLLSMIARGTDAEISVI  188
            P+  SR  + + L  GVRA+D+L++CG GQR+GI A++G GK+ L+ M+   T+A++ VI
Sbjct  124  PSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVI  183

Query  189  ALIGERGREVREFLENDLGPAGLRRSIVVVATSDEPPVVRLRAAFVATRIAEWFRDSGRH  248
            +LIGERGREV EF++   ++    + ++V ATSD P+V R  AA +AT +AE FRD G++
Sbjct  184  GLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKR  243

Query  249  VVLMMDSLTRVALAQREIGLSAGEPPATRGFPPSVFALLPRLLERAGTSPEGSITGLYTV  308
            VVL +DS+TR A A R+++L++GE PA RG+P+SVF  LPRLLER+G+++EGSIT++YTV
Sbjct  244  VVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTV  303

Query  309  LVEGDDLQDPIGDSARSILDGHVVLSRDLATSGHFPSIDVLESISRVASAIIEPSGRADG  368
            L+E+++  DP++D  RSILDGH+ LSR LA  GH+P+IDVL S+SRV + +  P+   ++
Sbjct  304  LLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQA  363

Query  369  IRLRRLLAAYRSVRELVEIGAYVAGSdadaddalalMPRINDFLRQDMSDVTPTADTWSA  428
              +R+L++    ++ ++++G Y +G + D D A+ +   ++  L Q +++ ++  DT S+
Sbjct  364  SAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSG  423

Query  429  LHEL  432
            ++ +
Sbjct  424  MNAF  427

738) fliI in NC_008570


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  220 bits (820),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 262/401 (66%), Gaps = 12/401 (2%)

Query  43   AIGALCRI----DTQDGSLEAEVVGFSGDRLFLMPSEQLKGVIPGARVVPITEEHGIPVG  98
            AIG LC I    + ++    A+VVG+  +R  L    + +G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  99   MNLLGRVIDGIGQPLD----GLGPILSSQTVQFAQHRINPLSRRPIHQPMDVGVRAINAV  154
             ++LG V+D  G+ ++     ++PI   + ++ A       SR  +++P+  GVRAI+++
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA--SRVGVREPLITGVRAIDGL  146

Query  155  LTVGQGQRMGLFAGSGVGKSVLLGMMTRGSVADVVVVGLIGERGREVKEFIEEILGEEGr  214
            LT G GQRMG+FA++G GK++L+ M+   + ADV V+GLIGERGREV EF++ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  215  arsvvvaapadaspLMRLKGCETALAIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVG  274
             + V+V A +D +++ R ++ + A ++AEYFRDQG  V+L++DS+TRYA+A R++ALA G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  275  EPPATKGYPPSVFAKLPALVERAGNGSDGQGSITAFFTVLTEGDDLQDPIADAARAILDG  334
            E PA +GYP+SVF +LP L+ER+G  S+  GSITAF+TVL E+++  DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  335  HIVLSRELADAGHYPAIDIEKSISRVMPMVTSPEHMELARTLKQFYSLYQQNRDLITIGA  394
            H+ LSR LA+ GHYPAID+ KS+SRV   VT+P H E A +++++ +  ++ + +I +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  395  YSQGSDPRIDRAIIQKPYLDQFLQQGMREVIHYDAGLQALQ  435
            Y  G +   DRA+  +  L   L Q + +   +D  L +++
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

739) fliI in NC_021290


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  220 bits (820),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 262/401 (66%), Gaps = 12/401 (2%)

Query  43   AIGALCRI----DTQDGSLEAEVVGFSGDRLFLMPSEQLKGVIPGARVVPITEEHGIPVG  98
            AIG LC I    + ++    A+VVG+  +R  L    + +G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  99   MNLLGRVIDGIGQPLD----GLGPILSSQTVQFAQHRINPLSRRPIHQPMDVGVRAINAV  154
             ++LG V+D  G+ ++     ++PI   + ++ A       SR  +++P+  GVRAI+++
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA--SRVGVREPLITGVRAIDGL  146

Query  155  LTVGQGQRMGLFAGSGVGKSVLLGMMTRGSVADVVVVGLIGERGREVKEFIEEILGEEGr  214
            LT G GQRMG+FA++G GK++L+ M+   + ADV V+GLIGERGREV EF++ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  215  arsvvvaapadaspLMRLKGCETALAIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVG  274
             + V+V A +D +++ R ++ + A ++AEYFRDQG  V+L++DS+TRYA+A R++ALA G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  275  EPPATKGYPPSVFAKLPALVERAGNGSDGQGSITAFFTVLTEGDDLQDPIADAARAILDG  334
            E PA +GYP+SVF +LP L+ER+G  S+  GSITAF+TVL E+++  DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  335  HIVLSRELADAGHYPAIDIEKSISRVMPMVTSPEHMELARTLKQFYSLYQQNRDLITIGA  394
            H+ LSR LA+ GHYPAID+ KS+SRV   VT+P H E A +++++ +  ++ + +I +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  395  YSQGSDPRIDRAIIQKPYLDQFLQQGMREVIHYDAGLQALQ  435
            Y  G +   DRA+  +  L   L Q + +   +D  L +++
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

740) fliI in NC_009348


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  220 bits (820),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 161/401 (41%), Positives = 265/401 (67%), Gaps = 12/401 (2%)

Query  43   AIGALC--RIDTQDGEL--EAEVVGFSGDRLFLMPSEQLKGVIPGARVVPMTEEHGIPVG  98
            AIG LC  R + ++ ++   A+VVG+  +R  L    + +G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  99   MNLLGRVIDGIGQPLD----GLGPILSSQTVQFAQHRINPLSRRPIHQPMDVGVRAINAV  154
             ++LG V+D  G+ ++     ++PI   + ++ A       SR  +++P+  GVRAI+++
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA--SRVGVREPLITGVRAIDGL  146

Query  155  LTVGQGQRMGLFAGSGVGKSVLLGMMTRGSVADVVVVGLIGERGREVKEFIEDILGEEGr  214
            LT G GQRMG+FA++G GK++L+ M+   + ADV V+GLIGERGREV EF++ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  215  arsvvvaapadaspLMRLKGCETALAIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVG  274
             + V+V A +D +++ R ++ + A ++AEYFRDQG  V+L++DS+TRYA+A R++ALA G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  275  EPPATKGYPPSVFAKLPALVERAGNGSDGQGSITAFFTVLTEGDDLQDPIADAARAILDG  334
            E PA +GYP+SVF +LP L+ER+G  S+  GSITAF+TVL E+++  DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  335  HIVLSRELADAGHYPAIDIEKSISRVMPMVTSPEHMDLARTLKQFYSLYQQNRDLITIGA  394
            H+ LSR LA+ GHYPAID+ KS+SRV   VT+P H + A +++++ +  ++ + +I +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  395  YSQGSDPRIDRAIVHKPYLDQFLQQGMREVIHYDEGLQSLQ  435
            Y  G +   DRA+  +  L   L Q + +   +D+ L +++
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

741) Achl_2988 in NC_011886


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  220 bits (820),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 146/357 (41%), Positives = 240/357 (68%), Gaps = 10/357 (2%)

Query  87   SKGKPLMVPTGTGLFGRVLDGLGRPID----GKGPLVTGRHVPADNESPSAMHRARVEAP  142
            + G++L    G +++G VLD  G+ ++      +P+   R +  D  +PS   R  V  P
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVI--DVAPPSYASRVGVREP  135

Query  143  LHTGVRVLDTMATLGRGQRMGLFAGSGVGKSSLLSMVARGTDAEVSVIALVGERGREVRE  202
            L TGVR +D + T G GQRMG+FA++G GK+ L+ M+   T+A+V VI+L+GERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  203  FLEDDLGAEGLARSVVVVATSDEPALMRLRCAVT--ATRIAESFREAGRDVVLMMDSLTR  260
            F++   +++   + V+V ATSD P++   RC  +  AT +AE FR+ G+ VVL +DS+TR
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVD--RCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  261  VAMAQREIGLSAGEPPATRGYPPSTFSLLARLLERAGTAETGSVTGIYTVLVDGDDHNEP  320
             A A R+++L++GE PA RGYP+S F  L+RLLER+G++  GS+T++YTVL++++++ +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  321  IADAARSILDGHVVLDRKLAVAGHFPSVDVLGSVSRVASKVNAPGNTAVAAVLRKTLAAR  380
            +AD  RSILDGH+ L RKLA  GH+P++DVL SVSRV ++V +P ++  A+ +RK ++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  381  RNAQDLIDVGAYHRGTNPLVDAALDNEAAINSFLQQRMDDSTPHRDSWQALTALTSR  437
             + Q +ID+G Y+ G N   D A++   ++++ L Q + + ++  D+  ++ A++ +
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQ  430

742) CtCNB1_0461 in NC_013446


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  220 bits (820),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 169/413 (41%), Positives = 275/413 (67%), Gaps = 27/413 (6%)

Query  29   RLTGMVLEASGLRVPVGAQCHIH---QHGQEPVLAEVVGFAGERAFLMPAGDIQGLSSGA  85
            ++TG ++EA    V++G  C+I+   ++ Q    A+VVG+  ER+ L   G+ QGLS + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  86   MVTPAAPFVPVPQLGVVETEKVSQTVGVLRLPMGDGLLGRVVDSQGTPLDH-AGELGSVV  144
            ++ P++                      L   +G ++LG V+D+ G  +++ + E++++ 
Sbjct  75   VLYPTGR--------------------ALSAWVGYSVLGAVLDPTGKIVERFTPEVAPIS  114

Query  145  PE-VLDRNPINAMDRDPVRESLDTGVKALNALLTVGRGQRLGLFAGSGVGKSVLLGMMAR  203
             E V+D  P +   R  VRE+L TGV+A+++LLT G GQR+G+FA++G GK++L+ M+  
Sbjct  115  EERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIE  174

Query  204  YTQADVIVVGLIGERGREVKEFVEDILGAQDRSRavvvaapadappLLRMQGASYATAIA  263
             T+ADV+V+GLIGERGREV EFV+ + +++ + + V+V A +D P++ R ++A  AT++A
Sbjct  175  QTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVA  234

Query  264  EHFRDKGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSCFAKLPALVERSGNGLH  323
            E FRD+GK+V+L++DS+TRYA A R++ALA GE PA +GYP+S F +LP L+ER+G    
Sbjct  235  EYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGAT--  292

Query  324  GVGSITAFYTVLSEGDDQQDPIADAARAILDGHVVLSRALAETGHYPAIDIEQSASRVMH  383
            + GSITAFYTVL E++++ DP+AD  R+ILDGH+ LSR LA  GHYPAID+ +S SRV  
Sbjct  293  SEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFG  352

Query  384  NVVSREHFELARRFRAVYSRYQKGRDLVQVGAYVPGSDPQLDEAIALQPAMTG  436
            +V +  H E A   R + +R +  + ++++G Y PG + + D A+ ++ ++ +
Sbjct  353  QVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

743) Sden_3656 in NC_007954


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  220 bits (819),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 134/312 (43%), Positives = 221/312 (71%), Gaps = 4/312 (1%)

Query  124  SNSSYNPLLRQPISQALDVGIRAINSLLPIGRGQRLGLFAGSGVGKSMLLGMMTRFTEAD  183
            + +SY +  R  + ++L  G+RAI++LL  G GQR+G+FA++G GK+ML+ M+   TEAD
Sbjct  122  APPSYAS--RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEAD  179

Query  184  VVVVGLIGERGREVREFIEQTLGEEGRKRAVVIAAPADTTPLMRLRAMVLSHEIACGFRD  243
            V V+GLIGERGREV EF++   + + + + V++ A +D  ++ R  A  L+  +A  FRD
Sbjct  180  VFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRD  239

Query  244  QGKQVLLLVDSLTRYAQAQREIALSLGEPPATKGYPPSAFAKLPHLVEMAGNGQHPQGTL  303
            QGK+V+L++DS+TRYA+A R++AL+ GE PA +GYP+S F +LP+L+E +G    ++G++
Sbjct  240  QGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGAT--SEGSI  297

Query  304  TAFYTVLTEGDDQQDPVADAARAILDGHVVLSRKLAEQGHFPAIDINASVSRLATQIASQ  363
            TAFYTVL E++++ DP+AD  R+ILDGH+ LSRKLA QGH+PAID+  SVSR+  Q+++ 
Sbjct  298  TAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTP  357

Query  364  DNLSQSHVVRHLLSRYNEVRELLPLGGYQAGHDQEMDLAVRHYRDIAAFLRQHMNENISR  423
             +  Q+  VR L++R +E++ ++ LG Y++G++ + D A++    + A L Q + +  S 
Sbjct  358  THAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSF  417

Query  424  EASLTQLAQLME  435
            + +L+ +  + +
Sbjct  418  DDTLSGMNAFAD  429

744) Plabr_2460 in NC_015174


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  220 bits (819),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 166/402 (42%), Positives = 274/402 (69%), Gaps = 7/402 (1%)

Query  40   PLGAVCRIEAG--QRQGID-AEVIGLEDDEIILQPYGELAGIKRGDTVRLVHSAQRIRVG  96
            ++G +C I  G  Q+Q +  A+V+GL+ +  +L   G+  G+ R+  +     A   +VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  97   DRLLGRVINARGEFID---GDLPPVLPESLMLQNAPIAPLQRPRITERLETGVRAIDSLL  153
              +LG V+++ G +++    +++P+ +E  +++ AP +   R  + E L TGVRAID+LL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPI-SEERVIDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  154  TCGQGQRLGIFAGSGVGKSTLLGQLARYASADVNvvvlvgergrevreflerdlgeegrr  213
            TCG GQR+GIFA++G GK+ L+  L   + ADV V+ L+GERGREV EF++   + + + 
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  214  rSVLVVATSEESALLRRQCANVGTAVAEYFRDQGKNVLLMMDSVTRYALAQREIGLAAGE  273
            + VLV ATS+ +++ R + A+++T+VAEYFRDQGK V+L +DS+TRYA A R+++LA+GE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  274  PPATRGYPPSVFALLPRLLERSGRTERGSITGLYTVLVEGDDTNEPIADTVRGILDGHIV  333
             PA RGYP+SVF  LPRLLER+G T  GSIT++YTVL+E+++  +P+AD +R+ILDGH+ 
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  334  LSRDLAHKAHWPAIDILGSISRLMNELADETHLAAARQLKQLMAAYRQSEDLINIGAYQH  393
            LSR LA ++H PAID+L S+SR+  +++  TH   A  +++LM+   + + +I++G Y+ 
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  394  GSNRVVDRAIQLKPRIDEFLQQTSTSHTPLPETIRLLQQLTA  435
            G N   DRA+Q++  +   L Q  +  +++ +T+  ++ ++ 
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

745) fliI in NC_010505


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  220 bits (818),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 155/379 (41%), Positives = 254/379 (68%), Gaps = 15/379 (3%)

Query  68   EVIGFQGDRALAMPFGSLEGVRRGCPAYVRDESAGAIRPSGAW-----LGRVIDALGRPV  122
            +V+G+Q +R++   +G+ +G+ R+   Y       + R+ +AW     LG V+D+ G+ V
Sbjct  50   QVVGLQRERTVLSLIGNAQGLSRDVVLY------PTGRALSAWVGYSVLGAVLDPTGKIV  103

Query  123  DGLGP-LAQGPDVYPLRADPPPAHARTRVGGPLDLGVRCINTFLTMCA-GQRMGIFAGSG  180
            + + P +A  ++   +   PP+  +R  V  PL  GVR I+ +LT C+ GQRMGIFA++G
Sbjct  104  ERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT-CGVGQRMGIFASAG  162

Query  181  VGKSVLLSMLARYTAADVAVIGLVGERGREVQEFLQDDLGAAGLARSVVVVATSDEPALM  240
             GK++L+ ML   T ADV VIGL+GERGREV EF++   ++    + V+V ATSD P++ 
Sbjct  163  CGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVD  222

Query  241  RRNAAYVTLSVAEHFRDQGAKVLCMIDSITRFAMAQRDIGLAAGEPPTAKGYTPTVFSEL  300
            R NAA ++ +VAE FRDQG +V+  IDS+TR+A A RD++LA+GE P+ +GY ++VF +L
Sbjct  223  RCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNL  282

Query  301  PRLLERAGPGVGQGTISALFTVLVEGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAI  360
            PRLLER+G + ++G+I+A++TVL+E++++ +P+AD +R+ILDGH+ + R +A +G+YPAI
Sbjct  283  PRLLERPG-ATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAI  341

Query  361  NVLRSVSRTMPRSCDPAYLPVVRRARRLLSTYADMEELIRLGAYRAGSSQEVDEAVALMP  420
            +VL+SVSR   +   P+        R+L++   +++ +I LG YR+G + + D A+ +  
Sbjct  342  DVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRD  401

Query  421  HLEAFLGQGKEEATSIGDG  439
             L A L Q   + +S++D 
Sbjct  402  SLKAWLCQPVAQYSSFDDT  420

746) B565_1102 in NC_015424


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  219 bits (817),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 262/401 (66%), Gaps = 12/401 (2%)

Query  43   AIGALCRI----DTLDGTLEAEVVGFSGDRLYLMPSEQLKGVIPGARVVPITEEHGIPVG  98
            AIG LC I    +  +    A+VVG+  +R  L    + +G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  99   MNLLGRVIDGIGQPLD----GLGPILSSQTVQFAQHRINPLSRRPIHQPMDVGVRAINAV  154
             ++LG V+D  G+ ++     ++PI   + ++ A       SR  +++P+  GVRAI+++
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA--SRVGVREPLITGVRAIDGL  146

Query  155  LTVGQGQRMGLFAGSGVGKSVLLGMMTRGSVADVVVVGLIGERGREVKEFIEDILGEEGr  214
            LT G GQRMG+FA++G GK++L+ M+   + ADV V+GLIGERGREV EF++ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  215  arsvvvaapadaspLMRLKGCETALAIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVG  274
             + V+V A +D +++ R ++ + A ++AEYFRDQG  V+L++DS+TRYA+A R++ALA G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  275  EPPATKGYPPSVFAKLPALVERAGNGSDGQGSITAFFTVLTEGDDLQDPIADAARAILDG  334
            E PA +GYP+SVF +LP L+ER+G  S+  GSITAF+TVL E+++  DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  335  HIVLSRELADAGHYPAIDIEKSISRVMPMVTSPEHMDLARTLKQFYSLYQQNRDLITIGA  394
            H+ LSR LA+ GHYPAID+ KS+SRV   VT+P H + A +++++ +  ++ + +I +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  395  YSQGSDPRIDRAIIQKPYLDQFLQQGMREVIHYDDGLQALQ  435
            Y  G +   DRA+  +  L   L Q + +   +DD L +++
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

747) HrcN in NC_007005


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  219 bits (816),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 172/421 (41%), Positives = 283/421 (68%), Gaps = 11/421 (2%)

Query  31   VRGILLECKIPSAKVGDLCEVSKA---DGSLLLAEIVGFTQECTLLSALGPPDGIQVGAP  87
            + G ++E  +    +G+LCE+ ++      +  A++VG+ +E T+LS +G ++G+  +  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  88   IRPLGVAHRIGVDDSLLGCVLDGFGRPLMGDCLGAFAGPEDRRTTLPVIADALPPTQRPR  147
            + P G A    V+ S+LG VLD       G  +  F+ PE    +   + D  PP+  +R
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDP-----TGKIVERFT-PEVAPISEERVIDVAPPSYASR  129

Query  148  IT--RALPTGIRAIDSAILLGEGQRVGLFAGAGCGKTTLMAELARNMDCDVIVFGLIGER  205
            +    +L TG+RAID+ +  G GQR+G+FA+AGCGKT LM  L  + + DV+V+GLIGER
Sbjct  130  VGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGER  189

Query  206  GRELREFLDHELDETLRRRSVLVCATSDRSSMeraraaftataiaeafrarGQKVLLLLD  265
            GRE+ EF+D       + + VLV ATSD +S++R  AA  AT++AE FR +G++V+L++D
Sbjct  190  GREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFID  249

Query  266  SLTRFARAQREIGIASGEPLGRGGLPPSVYTLLPRLVERAGMSENGSITALYTVLIEQDS  325
            S+TR+ARA R++++ASGE  +R G P+SV+  LPRL+ER+G + +GSITA+YTVL+E + 
Sbjct  250  SMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEE  309

Query  326  MNDPVADEVRSLLDGHIVLSRKLAERGHYPAIDVSASISRILSNVTGREHQRANNRLRQL  385
              DP+ADE+RS+LDGH+ LSRKLA +GHYPAIDV  S+SR++++VT   H    + +R+L
Sbjct  310  EADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKL  369

Query  386  LAAYKQVEMLLRLGEYQAGADPVTDCAVQLNEAINAFLRQDLREPVPLQETLDRLLQLTS  445
            ++   ++++++ LGEY++G +   D A+Q+ ++++A L Q + +  ++++TL  +  ++ 
Sbjct  370  MTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

Query  446  Q  446
            Q
Sbjct  430  Q  430

748) fliI in NC_006840


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  219 bits (814),  Expect = 4e-58, Method: Compositional matrix adjust.
 Identities = 156/376 (42%), Positives = 250/376 (67%), Gaps = 12/376 (3%)

Query  58   AEVVGFSGENLFLMPSEQVSGVLPGAKVTPIADGSGIPVGMELLGRVVDGVGNPIDGLGE  117
            A+VVG+  E   L    +  G+  +  + P + + +  VG  +LG V+D  G+ ++    
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVER---  105

Query  118  LYTEHTASFTSEPINPL------SRKPISEPLDVGLKAINGLLTVGKGQRLGLFAGSGVG  171
             +T + A+++ E +  +      SR  + EPL  G++AI+GLLT G GQR+G+FA++G G
Sbjct  106  -FTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCG  164

Query  172  KSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGPEGRQRsvvvaapadasaLMRL  231
            K++ + M+   T A+V V+GLIGERGREV EF++ + +++ +++ V+V A +D +++ R 
Sbjct  165  KTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRC  224

Query  232  KGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPA  291
            ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ GE PA +GYP+SVF +LP 
Sbjct  225  NAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPR  284

Query  292  LVERAGNGNENQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAID  351
            L+ER+G  +E  GSITAF+TVL E+++  DP+AD  R+ILDGH+ LSR +A+ GHYPAID
Sbjct  285  LLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAID  342

Query  352  VEKSVSRVMPQITDEEHMLMSKAVRQVLSTCRKNQDLVSIGAYKPGTDPAIDQAFTLKPR  411
            V KSVSRV  Q+T   H   + AVR++++     Q ++ +G Y+PG +   D+A  ++  
Sbjct  343  VLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDS  402

Query  412  LDEYLQQRMKESVPYD  427
            L   L Q + +  ++D
Sbjct  403  LKAWLCQPVAQYSSFD  418

749) fliI in NC_011184


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  219 bits (814),  Expect = 4e-58, Method: Compositional matrix adjust.
 Identities = 156/376 (42%), Positives = 250/376 (67%), Gaps = 12/376 (3%)

Query  58   AEVVGFSGENLFLMPSEQVSGVLPGAKVTPIADGSGIPVGMELLGRVVDGVGNPIDGLGE  117
            A+VVG+  E   L    +  G+  +  + P + + +  VG  +LG V+D  G+ ++    
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVER---  105

Query  118  LYTEHTASFTSEPINPL------SRKPISEPLDVGLKAINGLLTVGKGQRLGLFAGSGVG  171
             +T + A+++ E +  +      SR  + EPL  G++AI+GLLT G GQR+G+FA++G G
Sbjct  106  -FTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCG  164

Query  172  KSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGPEGRQRsvvvaapadasaLMRL  231
            K++ + M+   T A+V V+GLIGERGREV EF++ + +++ +++ V+V A +D +++ R 
Sbjct  165  KTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRC  224

Query  232  KGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGEPPATKGYPPSVFAKLPA  291
            ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ GE PA +GYP+SVF +LP 
Sbjct  225  NAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPR  284

Query  292  LVERAGNGNENQGSITAFFTVLTEGDDLQDPIADASRAILDGHIVLSREMADAGHYPAID  351
            L+ER+G  +E  GSITAF+TVL E+++  DP+AD  R+ILDGH+ LSR +A+ GHYPAID
Sbjct  285  LLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAID  342

Query  352  VEKSVSRVMPQITDEEHMLMSKAVRQVLSTCRKNQDLVSIGAYKPGTDPAIDQAFTLKPR  411
            V KSVSRV  Q+T   H   + AVR++++     Q ++ +G Y+PG +   D+A  ++  
Sbjct  343  VLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDS  402

Query  412  LDEYLQQRMKESVPYD  427
            L   L Q + +  ++D
Sbjct  403  LKAWLCQPVAQYSSFD  418

750) fliI in NC_005090


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  218 bits (813),  Expect = 4e-58, Method: Compositional matrix adjust.
 Identities = 144/350 (42%), Positives = 239/350 (69%), Gaps = 4/350 (1%)

Query  83   VYLNNRGLQIPVGAGLLGRVVDPLGRPIDG-AGEILGTEYAPIIK-PPIAAMKRGMIDEV  140
            +Y   R+L   VG ++LG V+DP G+ ++  + E+       +I  +P +   R  + E 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  141  FSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGASAPIKVIALIGERGREVPE  200
            +  GV++IDGLLTCG GQ++GIFA++G GK+ LM M++  + A + VI+LIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  201  FIEK-NLGGNLENTVLVVATSDDSPLMRKYGAFSAMSVAEYFKARGEDVLFMMDSVTRFA  259
            F++    + + E+ VLV ATSD +++ R  +A  A +VAEYF+ +G  V++ +DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  260  MAQREIGLALGEPPTSKGYPPSVLTLLPQLMERAGKEEGHGSITAFFTVLVEGDDMGDPI  319
             A R+++LA GE P+ +GYP+SV+  LP+L+ER+G   ++GSITAF+TVL+E+++ +DP+
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPG-ATSEGSITAFYTVLLESEEEADPM  314

Query  320  ADQSRSILDGHIVLSRELTDFGIYPPINILNSASRLMNDVSTKDHVLAARKFRRLYSLLK  379
            AD+ RSILDGH+ LSR L++ G YP+I++L+S SR+  +V+T  H   A   R+L + L 
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  380  ENEVLIRIGAYQKGNDRELDEAIEKKERMEGYLKQNFDENWEFEKSVSEL  429
            E +++I +G Y+ G++ + D A++ ++ + + L Q   +   F+ ++S +
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

751) MYSTI_02833 in NC_020126


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  218 bits (813),  Expect = 4e-58, Method: Compositional matrix adjust.
 Identities = 167/416 (41%), Positives = 272/416 (66%), Gaps = 6/416 (1%)

Query  27   LTGLIIKASVPNVRVGELVLIK---SRSRGSVKAEVVGFQGDEVMLMPLGELYGIGPDSE  83
            +TG II A + +V +GEL  I+    + +   +A+VVG+Q +  +L  +G+  G++ D  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  84   VIPTGKPLSIKCGEALLGRVLNGIGEPMDGSALPDEGLI--DWSVDRDCPDPFTRQRIER  141
            + PTG++LS   G ++LG VL+  G  ++  + P+ + I  ++ +D   P   +R  +  
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFT-PEVAPISEERVIDVAPPSYASRVGVRE  134

Query  142  PLPLGVRCIDGLLTVGEGQRVGLFAGSGVGKSTLMGQIARNTQADLCVVALIGERGREVR  201
            PL  GVR IDGLLT G GQR+G+FA++G GK+ LM  +  +T+AD+ V++LIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  202  EFIEDAMGEEGMKRSVLVCATSDQPSLVRLRAAYVATAIAEYFRERGGNVLFMLDTVTRL  261
            EF++   + +   + VLV ATSD PS+ R  AA +AT++AEYFR++G  V++ +D++TR 
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  262  ARAQREIGLAVGEPPARQGYPPSVFSMLPRILERTGNSAKGKCTAIYTCLVAGGDMEEPI  321
            ARA R+++LA GE PAR+GYP+SVF  LPR+LER G ++ G  TA+YT L+ + +  +P+
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPM  314

Query  322  ADEVRGILDGHFILNRALGERNQWPAMDVLASLSRVMSGIVSKEHKKAAGKLRETLATYE  381
            ADE+R+ILDGH+ L+R L+ + + PA+DVL S+SRV + + +  H   A+ +R  ++  E
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  382  KQRDLILLGAYQYGTDPRTdyaidkydaiidFLKQDTHSNSGFEETVEQLVALFEE  437
              + +I LG Y+ G +   D A++  D++   L Q     S+F++T+  + A+ ++
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQ  430

752) fliI in NC_006370


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  218 bits (812),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 143/336 (43%), Positives = 228/336 (68%), Gaps = 8/336 (2%)

Query  97   VGPELLGRVIDGVGNPLD----GLGDIFTEKRASFTSPAINPLLRKPIKEPLDVGIKAIN  152
            VG  +LG V+D  G+ ++     ++ I  E+    ++P+  +  R  ++EPL  G++AI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAID  144

Query  153  GLLSVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIDEILGEE  212
            GLL+ G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGREV EF+D + + +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  213  GRKRAVVIAAPADTSPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALS  272
             + + V++ A +D +++ R ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  273  VGEPPATKGYPPSVFAKLPALVERAGNGSGDQGSITAFFTVLTEGDDLQDPIADASRAIL  332
             GE PA +GYP+SVF +LP L+ER+G  S  +GSITAF+TVL E+++  DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATS--EGSITAFYTVLLESEEEADPMADEIRSIL  322

Query  333  DGHIVLSREMADAGHYPAIDVERSVSRVMPAIVDDEHMLMSKAVRQILSICRKNQDLVSI  392
            DGH+ LSR +A+ GHYPAIDV +SVSRV   +    H   + AVR++++     Q ++ +
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  393  GAYKPGTDPTIDQAFSFKPKLDAYLQQEMKESVPYA  428
            G Y+PG +   D+A   +  L A L Q + +  ++ 
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

753) fliI in NC_006155


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  218 bits (812),  Expect = 6e-58, Method: Compositional matrix adjust.
 Identities = 142/333 (43%), Positives = 232/333 (70%), Gaps = 6/333 (1%)

Query  127  LLGRVLDGSAKPLDGLP---APETGYRAPLITPPINPLQRTAIVQVLDVGVRTINALLTV  183
            +LG VLD ++K ++ +    AP +  R   ++PP  +  R ++ + L  GVR+I++LLT 
Sbjct  91   VLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTC  149

Query  184  GRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARS  243
            G GQRMG+FA++G GK++L+ M+   T+ADV+V+GLIGERGREV +F++ + +++ + + 
Sbjct  150  GVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKC  209

Query  244  VVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPP  303
            V++ A +D +++ R ++A  AT +AE FRD+G++V+L++DS+TRYA A R++ALA GE P
Sbjct  210  VLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERP  269

Query  304  ATKGYPPSVFAKLPALVERAGNGVSGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVV  363
            A +GYP+SVF +LP L+ER+G   ++ GSITAFYTVL E++++ DP+AD  R+ILDGH+ 
Sbjct  270  ARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  364  LSRRLAESGHYPAIDIEASISRAMTSLIDDDHYSRVRQFKQLLASYQRNRDLVSVGAYAA  423
            LSR+LA  GHYPAID+  S+SR    +    H  +    ++L++  +  + ++ +G Y +
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  424  GSDPLLDKAIALYPQMEAFLQQGMFERSSFDDA  456
            G +   D+A+ +   + A L Q + + SSFDD+
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

754) hrcN in NC_004578


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  218 bits (812),  Expect = 6e-58, Method: Compositional matrix adjust.
 Identities = 171/417 (42%), Positives = 282/417 (68%), Gaps = 11/417 (2%)

Query  35   LLECKIPAAKVGDLCEVSKA---DGSFLLAEIVGFTQECTLLSALGAPDGIQVGAPIRPL  91
            ++E  +    +G+LCE+ ++         A++VG+ +E T+LS +G ++G+  +  + P 
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  92   GIAHRIGVDDTLLGCVLDGFGRPLLGDCLGAFAGPDDRRDTLPVIADALPPTQRPRIT--  149
            G A    V+ ++LG VLD  G+      +  F+ P+    +   + D  PP+  +R+   
Sbjct  80   GRALSAWVGYSVLGAVLDPTGK-----IVERFT-PEVAPISEERVIDVAPPSYASRVGVR  133

Query  150  RSLPTGIRAIDSAILLGEGQRVGLFAGAGCGKTTLMAELARNMDCDVIVFGLIGERGREL  209
             +L TG+RAID+ +  G GQR+G+FA+AGCGKT LM  L  + + DV+V+GLIGERGRE+
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  210  REFLDHELDETLRARSVLVCATSDRSSMeraraaftataiaeafrarGQKVLLLLDSLTR  269
             EF+D       + + VLV ATSD +S++R  AA  AT++AE FR +G++V+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  270  FARAQREIGIASGEPLGRGGLPPSVYTLLPRLVERAGMSENGSITALYTVLIEQDSMNDP  329
            +ARA R++++ASGE  +R G P+SV+  LPRL+ER+G + +GSITA+YTVL+E +   DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  330  VADEVRSLLDGHIVLSRKLAERGHYPAIDVSASISRILSNVTGRDHQRANNRLRQLLAAY  389
            +ADE+RS+LDGH+ LSRKLA +GHYPAIDV  S+SR++++VT   H    + +R+L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  390  KQVEMLLRLGEYQAGADPVTDCAVQLNDAINAFLRQDLREPVPLQETLDGLLRITSQ  446
             ++++++ LGEY++G +   D A+Q+ D+++A L Q + +  ++++TL G+  ++ Q
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQ  430

755) fliI in NC_011757


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  218 bits (811),  Expect = 7e-58, Method: Compositional matrix adjust.
 Identities = 149/344 (44%), Positives = 232/344 (68%), Gaps = 13/344 (3%)

Query  106  RPSAAWLGRTVDALGRPIDGLGPLAQ--GPAIYPLRAD------PPPAHGRRRVGPPLDL  157
            R+ +AW+G +V  LG  +D  G + +   P + P+  +      PP+  +R  V  PL  
Sbjct  81   RALSAWVGYSV--LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  158  GVRCINTFLTMC-RGQRMGIFAGSGVGKSVLLSMLARYTAADVAVIGLVGERGREVQEFL  216
            GVR I+ +LT C  GQRMGIFA++G GK++L+ ML   T ADV VIGL+GERGREV EF+
Sbjct  139  GVRAIDGLLT-CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFV  197

Query  217  QDDLGAAGLARSVVVVATSDEPVLMRRNAAYVTLAVAEYFRDQGAQVLCMIDSITRFAMA  276
            +   ++    + V+V ATSD P + R NAA ++ +VAEYFRDQG +V+  IDS+TR+A A
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  277  QRDIGLAGGEPPTAKGYTPTVFSELPRLLERAGPGVGEGAISGLFTVLVEGDDHNEPVAD  336
             RD++LA+GE P+ +GY ++VF +LPRLLER+G + +EG+I++++TVL+E++++ +P+AD
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPG-ATSEGSITAFYTVLLESEEEADPMAD  316

Query  337  AVRGILDGHIVMERRIAEQGRYPAINVLRSVSRTMPRACDPAHLPTVRRARKVLATYADM  396
             +R+ILDGH+ + R++A QG+YPAI+VL+SVSR   +   P+H       RK+++   ++
Sbjct  317  EIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEEL  376

Query  397  EELIRLGAYRAGSAPEVDEAVALMPDLTAFLGQGKEEATSISEG  440
            + +I LG YR+G   + D A+ +   L A L Q   + +S+ + 
Sbjct  377  QLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

756) fliI in NC_010634


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  218 bits (811),  Expect = 7e-58, Method: Compositional matrix adjust.
 Identities = 142/333 (43%), Positives = 232/333 (70%), Gaps = 6/333 (1%)

Query  133  LLGRVLDGSAKPLDGLP---APETGYRAPLITPPINPLQRTAIVQVLDVGVRTINALLTV  189
            +LG VLD ++K ++ +    AP +  R   ++PP  +  R ++ + L  GVR+I++LLT 
Sbjct  91   VLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTC  149

Query  190  GRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARS  249
            G GQRMG+FA++G GK++L+ M+   T+ADV+V+GLIGERGREV +F++ + +++ + + 
Sbjct  150  GVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKC  209

Query  250  VVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPP  309
            V++ A +D +++ R ++A  AT +AE FRD+G++V+L++DS+TRYA A R++ALA GE P
Sbjct  210  VLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERP  269

Query  310  ATKGYPPSVFAKLPALVERAGNGVSGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVV  369
            A +GYP+SVF +LP L+ER+G   ++ GSITAFYTVL E++++ DP+AD  R+ILDGH+ 
Sbjct  270  ARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  370  LSRRLAESGHYPAIDIEASISRAMTSLIDDDHYSRVRQFKQLLASYQRNRDLVSVGAYAA  429
            LSR+LA  GHYPAID+  S+SR    +    H  +    ++L++  +  + ++ +G Y +
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  430  GSDPLLDKAIALYPQMEAFLQQGMFERSSFDDA  462
            G +   D+A+ +   + A L Q + + SSFDD+
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

757) fliI in NC_017082


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  218 bits (811),  Expect = 7e-58, Method: Compositional matrix adjust.
 Identities = 141/340 (42%), Positives = 232/340 (69%), Gaps = 11/340 (3%)

Query  95   AAWLGRVVNALGEPIDGKGPLPQ--GPAPMPYRN------SPPPAHSRKRVGAPLDLGVR  146
            +AW+G   + LG  +D  G + +   P   P  +      +PP+  SR  V  PL  GVR
Sbjct  84   SAWVG--YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVR  141

Query  147  AMNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNVDAAVSVIGLIGERGREVQEFLQDDL  206
            A++ +LTC  GQRMGIFA++G GK++L+ ML  + +A V VIGLIGERGREV EF++   
Sbjct  142  AIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLR  201

Query  207  GEEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDEEKDVLCLMDSVTRFAMAQREI  266
            + +   + V+V ATSD P++ R +AA L+ ++AEYFRD+ K V+ ++DS+TR+A A R++
Sbjct  202  ASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDV  261

Query  267  GLSAGEPPTAKGYTPTVFTELPKLLERAGPGLGEGAITAIFTVLVDGDDHNEPIADAVRG  326
            +L++GE P+ +GY ++VF +LP+LLER+G+  +EG+ITA++TVL++++++ +P+AD +R+
Sbjct  262  ALASGERPARRGYPASVFDNLPRLLERPGAT-SEGSITAFYTVLLESEEEADPMADEIRS  320

Query  327  ILDGHIVMQRSIAERGRYPAINILKSVSRTMPKSADPQFWPVIQKARAVMATYADMEELI  386
            ILDGH+ + R +A +G+YPAI++LKSVSR   + + P         R +M+   +++ +I
Sbjct  321  ILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFI  380

Query  387  RLGAYRAGSSPEVDEAIRLHEPLEAFLKQRKDENASLADG  426
             LG YR+G + + D A++++++L A L Q   + +S+ D 
Sbjct  381  DLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

758) Dvul_2671 in NC_008751


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  218 bits (810),  Expect = 8e-58, Method: Compositional matrix adjust.
 Identities = 165/408 (41%), Positives = 267/408 (66%), Gaps = 22/408 (5%)

Query  26   KVVGLVAEGSGIKAPLGAVCHMLPDDGGESVAA--EVVGFRDGRLLFMPYGELRGVRPGS  83
            K+ G + E+     ++G +C++  +     V A  +VVG++  R ++   G+ +G     
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQG-----  69

Query  84   LIRNSSLPPVFPVGEGLLGR-AFDAFGAPLDGGTPVM----PEAWAPLYA------SPPN  132
            L R+  L   +P G +L ++ ++  +GA LD    ++    PE  AP+        +PP+
Sbjct  70   LSRDVVL---YPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEV-APISEERVIDVAPPS  125

Query  133  PLTRPRIDTPLDVGVRCINSLLTLGRGQRVGIMAGSGVGKSTLMGMMARYTEAQVNVIGL  192
              +R  +  PL  GVR I++LLT G GQR+GI A++G GK+ LM M+   TEA+V VIGL
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  193  IGERGREVVEFMEKDLGPEGMARSVLVVATSDQSPLVRMRaayaatavaEFFRDQGKDVL  252
            IGERGREV EF++   +++   + VLV ATSD +++ R  AA  AT+VAE+FRDQGK V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  253  LMMDSVTRFAMAAREVGLAVGEPPTTKGYTPTVFAQLPRLLERAGRSPEGTITGIYTVLV  312
            L +DS+TR+A A R+V+LA GE P+ +GY ++VF +LPRLLER+G ++EG+IT++YTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  313  DGDDFNEPIADAVRSILDGHIVLTRELADQGHFPAIDVLKSISRLRTDICPDDIVNAGRI  372
            ++++  +P+AD +RSILDGH+ L+R LA+QGH+PAIDVLKS+SR+  ++      + +  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  373  LTRHMATFRRVEDMINIGAYATGSNPDIDKAIAMVGPINDFLRQHITD  420
            + + M+ +  ++  I++G Y  G N D D+A+ M ++++  L Q +++
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

759) fliI in NC_002937


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  218 bits (810),  Expect = 8e-58, Method: Compositional matrix adjust.
 Identities = 165/408 (41%), Positives = 267/408 (66%), Gaps = 22/408 (5%)

Query  26   KVVGLVAEGSGIKAPLGAVCHMLPDDGGESVAA--EVVGFRDGRLLFMPYGELRGVRPGS  83
            K+ G + E+     ++G +C++  +     V A  +VVG++  R ++   G+ +G     
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQG-----  69

Query  84   LIRNSSLPPVFPVGEGLLGR-AFDAFGAPLDGGTPVM----PEAWAPLYA------SPPN  132
            L R+  L   +P G +L ++ ++  +GA LD    ++    PE  AP+        +PP+
Sbjct  70   LSRDVVL---YPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEV-APISEERVIDVAPPS  125

Query  133  PLTRPRIDTPLDVGVRCINSLLTLGRGQRVGIMAGSGVGKSTLMGMMARYTEAQVNVIGL  192
              +R  +  PL  GVR I++LLT G GQR+GI A++G GK+ LM M+   TEA+V VIGL
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  193  IGERGREVVEFMEKDLGPEGMARSVLVVATSDQSPLVRMRaayaatavaEFFRDQGKDVL  252
            IGERGREV EF++   +++   + VLV ATSD +++ R  AA  AT+VAE+FRDQGK V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  253  LMMDSVTRFAMAAREVGLAVGEPPTTKGYTPTVFAQLPRLLERAGRSPEGTITGIYTVLV  312
            L +DS+TR+A A R+V+LA GE P+ +GY ++VF +LPRLLER+G ++EG+IT++YTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  313  DGDDFNEPIADAVRSILDGHIVLTRELADQGHFPAIDVLKSISRLRTDICPDDIVNAGRI  372
            ++++  +P+AD +RSILDGH+ L+R LA+QGH+PAIDVLKS+SR+  ++      + +  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  373  LTRHMATFRRVEDMINIGAYATGSNPDIDKAIAMVGPINDFLRQHITD  420
            + + M+ +  ++  I++G Y  G N D D+A+ M ++++  L Q +++
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

760) Deval_0281 in NC_017310


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  218 bits (810),  Expect = 8e-58, Method: Compositional matrix adjust.
 Identities = 165/408 (41%), Positives = 267/408 (66%), Gaps = 22/408 (5%)

Query  26   KVVGLVAEGSGIKAPLGAVCHMLPDDGGESVAA--EVVGFRDGRLLFMPYGELRGVRPGS  83
            K+ G + E+     ++G +C++  +     V A  +VVG++  R ++   G+ +G     
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQG-----  69

Query  84   LIRNSSLPPVFPVGEGLLGR-AFDAFGAPLDGGTPVM----PEAWAPLYA------SPPN  132
            L R+  L   +P G +L ++ ++  +GA LD    ++    PE  AP+        +PP+
Sbjct  70   LSRDVVL---YPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEV-APISEERVIDVAPPS  125

Query  133  PLTRPRIDTPLDVGVRCINSLLTLGRGQRVGIMAGSGVGKSTLMGMMARYTEAQVNVIGL  192
              +R  +  PL  GVR I++LLT G GQR+GI A++G GK+ LM M+   TEA+V VIGL
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  193  IGERGREVVEFMEKDLGPEGMARSVLVVATSDQSPLVRMRaayaatavaEFFRDQGKDVL  252
            IGERGREV EF++   +++   + VLV ATSD +++ R  AA  AT+VAE+FRDQGK V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  253  LMMDSVTRFAMAAREVGLAVGEPPTTKGYTPTVFAQLPRLLERAGRSPEGTITGIYTVLV  312
            L +DS+TR+A A R+V+LA GE P+ +GY ++VF +LPRLLER+G ++EG+IT++YTVL+
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLL  305

Query  313  DGDDFNEPIADAVRSILDGHIVLTRELADQGHFPAIDVLKSISRLRTDICPDDIVNAGRI  372
            ++++  +P+AD +RSILDGH+ L+R LA+QGH+PAIDVLKS+SR+  ++      + +  
Sbjct  306  ESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASA  365

Query  373  LTRHMATFRRVEDMINIGAYATGSNPDIDKAIAMVGPINDFLRQHITD  420
            + + M+ +  ++  I++G Y  G N D D+A+ M ++++  L Q +++
Sbjct  366  VRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

761) fliI in NC_010725


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  218 bits (810),  Expect = 9e-58, Method: Compositional matrix adjust.
 Identities = 146/345 (43%), Positives = 234/345 (68%), Gaps = 15/345 (4%)

Query  107  RPSAAW-----LGRTVDALGRPID----GLGPLPQGPAIYPLRADPPPAHGRRRVGPPLD  157
            R+ +AW     LG  +D+ G+ ++     ++P+++   I      PP+  +R  V  PL 
Sbjct  81   RALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVI---DVAPPSYASRVGVREPLI  137

Query  158  LGVRCINTFLTMC-RGQRMGIFAGSGVGKSVLLSMLARYTAADVAVIGLVGERGREVQEF  216
             GVR I+ +LT C  GQRMGIFA++G GK++L+ ML   T ADV VIGL+GERGREV EF
Sbjct  138  TGVRAIDGLLT-CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEF  196

Query  217  LQDDLGAAGLARSVVVVATSDEPVLMRRNAAYVTLAIAEYFRDQGAQVLCMIDSITRFAM  276
            ++   ++    + V+V ATSD P + R NAA ++ ++AEYFRDQG +V+  IDS+TR+A 
Sbjct  197  VDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYAR  256

Query  277  AQRDIGLAGGEPPTAKGYTPTVFSELPRLLERAGPGVGEGAISGLFTVLVEGDDHNEPVA  336
            A RD++LA+GE P+ +GY ++VF +LPRLLER+G + +EG+I++++TVL+E++++ +P+A
Sbjct  257  ALRDVALASGERPARRGYPASVFDNLPRLLERPG-ATSEGSITAFYTVLLESEEEADPMA  315

Query  337  DAVRGILDGHIVMERRIAEQGRYPAINVLRSVSRTMPRACDPAHLPTVRRARKVLATYAD  396
            D +R+ILDGH+ + R++A QG+YPAI+VL+SVSR   +   P+H       RK+++   +
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  397  MEELIRLGAYRAGSSPEVDEAVALMPDLTAFLGQGKEEATSIGEG  441
            ++ +I LG YR+G + + D A+ +   L A L Q   + +S+++ 
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

762) fliI in NC_012808


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  217 bits (808),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 149/344 (44%), Positives = 232/344 (68%), Gaps = 13/344 (3%)

Query  106  RPSAAWLGRTVDALGRPIDGLGPLAQ--GPAIYPLRAD------PPPAHGRRRVGPPLDL  157
            R+ +AW+G +V  LG  +D  G + +   P + P+  +      PP+  +R  V  PL  
Sbjct  81   RALSAWVGYSV--LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  158  GVRCINTFLTMC-RGQRMGIFAGSGVGKSVLLSMLARYTAADVAVIGLVGERGREVQEFL  216
            GVR I+ +LT C  GQRMGIFA++G GK++L+ ML   T ADV VIGL+GERGREV EF+
Sbjct  139  GVRAIDGLLT-CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFV  197

Query  217  QDDLGAAGLAHSVVVVATSDEPVLMRRNAAYVTLAVAEYFRDQGAQVLCMIDSITRFAMA  276
            +   ++      V+V ATSD P + R NAA ++ +VAEYFRDQG +V+  IDS+TR+A A
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  277  QRDIGLAGGEPPTAKGYTPTVFSELPRLLERAGPGVGEGAISGLFTVLVEGDDHNEPVAD  336
             RD++LA+GE P+ +GY ++VF +LPRLLER+G + +EG+I++++TVL+E++++ +P+AD
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPG-ATSEGSITAFYTVLLESEEEADPMAD  316

Query  337  AVRGILDGHIVMERRIAEQGRYPAINVLRSVSRTMPRACDPAHLPTVRRARKVLATYADM  396
             +R+ILDGH+ + R++A QG+YPAI+VL+SVSR   +   P+H       RK+++   ++
Sbjct  317  EIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEEL  376

Query  397  EELIRLGAYRAGSSPEVDEAVALMPDLTAFLGQGKEEATSISEG  440
            + +I LG YR+G + + D A+ +   L A L Q   + +S+ + 
Sbjct  377  QLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

763) fliI in NC_014246


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  217 bits (808),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 147/336 (44%), Positives = 234/336 (70%), Gaps = 6/336 (1%)

Query  96   VGPALLGRVIDAAGRPLD----GKGPIYAADRVPIHGAAPNALERARIDMPVAMGVRVLD  151
            VG ++LG V+D++G+ ++      +PI + +RV I+ A+P+   R  +  P+  GVR +D
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPI-SEERV-IDVAPPSYASRVGVREPLITGVRAID  144

Query  152  TLVTLGRGQRIGLFAGSGVGKSTLMSMIARGTNAEVCVIALVGERGREVREFleddlgee  211
             L+T G GQR+G+FA++G GK+ LM M+   T+A+V VI+L+GERGREV EF++   + +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  212  glSRSVVVVATSDESPMLRKRAAFTATRVAEYYRDAGRHVLLMMDSLTRTCMAQREIGLS  271
               + V+V ATSD +++ R  AA  AT VAEY+RD G++V+L +DS+TR   A R+++L+
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  272  VGEPPATRGYPPSTFSMMAQLLERAGSGAIGSVTGIYTVLVDGDDHNEPIADQARSILDG  331
             GE PA RGYP+S F  +++LLER+G+ + GS+T++YTVL++++++ +P+AD+ RSILDG
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  332  HVVLDRKLAVAGHYPAIDALGSISRVASKVTTREQREAATALRQIMGAKRSVQDLLDVGA  391
            H+ L RKLA  GHYPAID L S+SRV ++VTT  + E A+A+R++M     +Q ++D+G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  392  YQAGTNPEVDTAVKYDAEIEAFLTQKTDEKVEFDAA  427
            Y++G N + D A++    + A L Q   +   FD +
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

764) bglu_1g33550 in NC_012724


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  217 bits (807),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 148/350 (43%), Positives = 245/350 (70%), Gaps = 9/350 (2%)

Query  134  VGWQMLGRVVDASGRPLDRL----GPLGSELDAPLSAPTINPLEREPIHHVLDVGVRAIN  189
            VG  +LG V+D++G+ ++R+    +P++ E    +++P+  +  R  +++ L  GVRAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAID  144

Query  190  ALLTVGRGQRMGLFAGSGVGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGED  249
            +LLT G GQRMG+FA++G GK++L+  +   T A+V+VIGLIGERGREV EF++ + + +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  250  GLarsvvvaapadvspLLRMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQREIALA  309
               + V+V A +D +++ R ++A  AT++AEYFRDQGK+V+L++DS+TRYA A R++ALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  310  IGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAIL  369
             GE PA +GYP+SVF +LP L+ER G  +EG  SITAFYTVL E++++ DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSEG--SITAFYTVLLESEEEADPMADEIRSIL  322

Query  370  DGHIVLSRQLAEAGHYPAIDIEQSISRAMTALIDDRHLDRVRRFKQMLSRYQRNRDLIAV  429
            DGH+ LSR+LA  GHYPAID+ +S+SR    +    H ++    +++++R +  + +I +
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  430  GAYAAGRDAQLDRAIALYPRIEAFLQQGFRECAPFASCMAALDALFPGEG  479
            G Y +G + + DRA+ +   + A L Q   + ++F   +++++A F+++ 
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA-FADQN  431

765) DND132_1089 in NC_016803


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  217 bits (807),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 149/351 (43%), Positives = 242/351 (69%), Gaps = 12/351 (3%)

Query  92   PVGPALLGR-AVDAFGAPLDGKGPIHAQTFAP----------LHREPPNPLERPRINQPL  140
            P G AL ++ +   +GA LD  G I  + F+P          ++  PP+   R  + +PL
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKI-VERFTPEVAPISEERVIDVAPPSYASRVGVREPL  136

Query  141  DVGIRSVNALLTLGKGQRVGIMAGSGVGKSTTLGMMARYTKADVNVIALVGERGREVVEF  200
              G+R++++LLT G GQR+GI A++G GK+  + M+   T ADV VI+L+GERGREV EF
Sbjct  137  ITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEF  196

Query  201  MERDLGPEGMARSVLVVATSDKSPLIRMRaayaatavaEYFRDQGKDVLLMMDSVTRFAM  260
            ++   +++   + VLV ATSD +++ R  AA  AT+VAEYFRDQGK V+L +DS+TR+A 
Sbjct  197  VDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYAR  256

Query  261  AGREVGLAAGEPPTRGGYTPSVFAHLPQLLERAGKNRKGSITGVYTVLVDGDDFTEPIAD  320
            A R+V+LA+GE P+R GY +SVF +LP+LLER+G    GSIT+ YTVL+++++ ++P+AD
Sbjct  257  ALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMAD  316

Query  321  STRSILDGHIVLTRELADLGHYPAIDVLRSISRLRSDITTKEAQADGRALLRHMATFKRV  380
              RSILDGH+ L+R LA+ GHYPAIDVL+S+SR+ +++TT     ++ A+ + M+ +  +
Sbjct  317  EIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEEL  376

Query  381  EDMVNIGAYQKGANPEVDKAINMVGPINRFLRQLVEEQETLDGAFKAMHEL  431
            +  +++G Y+ G N + D+A++M ++++  L Q V +  ++D+++ +M+ +
Sbjct  377  QLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

766) fliI in NC_018868


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  217 bits (809),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 179/418 (43%), Positives = 278/418 (67%), Gaps = 14/418 (3%)

Query  30   RVVGMTLEAEGIDVGIGQPCEL----LTLSGPVRAQVVGFNESRVFLMPMGPAQGLKVGL  85
            ++ G  +EAE  DV+IG+ CE+           RAQVVG++  R  L  +G AQGL  ++
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  86   PVKPLAHAQGIPVGPGLLGRVIDANGKPLDNRGPLTQIAFAEPDGRVINPL-----DRHP  140
             + P ++A +  VG ++LG V+D+ GK ++   P  ++A + ++ RVI+        R  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP--EVA-PISEERVIDVAPPSYASRVG  131

Query  141  ISEPLDVGIRAINGLLTVGKGQRIGLFAGSGVGKSVLLGMMTRFTKADvvvvglvgergr  200
            + EPL  G+RAI+GLLT G GQR+G+FA++G GK++L+ M+   T ADV V+GL+GERGR
Sbjct  132  VREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGR  191

Query  201  evKEFVDHILGEAGLRRavvvaspaddvpLLRLNASHLATGIAEYFRDQGKDVLLLMDSL  260
            EV EFVD + +     + V+V + +D  ++ R NA++LAT +AEYFRDQGK V+L++DS+
Sbjct  192  EVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSM  251

Query  261  TRYAQAQREIALSIGEPPATRGYPPSVFAKLPQLVERAGNGRAGGGSITAFYTVLTEGDD  320
            TRYA+A R++AL+ GE PA RGYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E+++
Sbjct  252  TRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEE  309

Query  321  LQDPIADASRAILDGHVVLNRRLADEGVYPAIDVEASVSRVMPSVVSESQLAMAQTFKGL  380
              DP+AD  R+ILDGH+ L+R+LA++G YPAIDV  SVSRV   V + ++   A + + L
Sbjct  310  EADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKL  369

Query  381  MANYRQNRDLISMGAYQAGADPALDEAIQKQPALKRYVSQRMSEAVDMAAAQLGLGEL  438
            M+   + + +I +G Y++G +   D A+Q + +LK  + Q +++      +  G+  +
Sbjct  370  MTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

767) fliI in NC_009708


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  217 bits (807),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 141/333 (43%), Positives = 231/333 (70%), Gaps = 6/333 (1%)

Query  133  LLGRVLDGSAKPLDGLP---APETGYRAPLITPPINPLQRTAIVQVLDVGVRTINALLTV  189
            +LG VLD ++K ++ +    AP +  R   ++PP  +  R ++ + L  GVR+I++LLT 
Sbjct  91   VLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTC  149

Query  190  GRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARS  249
            G GQRMG+FA++G GK++L+ M+   T+ADV+V+GLIGERGREV +F++ + +++ + + 
Sbjct  150  GVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKC  209

Query  250  VVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPP  309
            V++ A +D +++ R ++A  AT +AE FRD+G++V+L++DS+TRYA A R++ALA GE P
Sbjct  210  VLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERP  269

Query  310  ATKGYPPSVFAKLPALVERAGNGVSGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVV  369
            A +GYP+SVF +LP L+ER+G   ++ GSITAFYTVL E++++ DP+AD  R+ILDGH+ 
Sbjct  270  ARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  370  LSRRLAESGHYPAIDIEASISRAMTSLIDDDHYSRVRQFKQLLASYQRNRDLVSVGAYAA  429
            LSR+LA  GHYPAID+  S+SR    +    H  +    ++L++  +  + ++ +G Y +
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  430  GSDPLLDKAIALYPQMEIFLQQGMFERSSFDDA  462
            G +   D+A+ +   +   L Q + + SSFDD+
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

768) fliI in NC_016002


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  217 bits (808),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 147/353 (42%), Positives = 242/353 (69%), Gaps = 10/353 (2%)

Query  115  AAGRQVP--VGFNLLGRVLDSLGRPLD----EKGPLQPEAYFPLYSQPLNPLERSPVRDV  168
            ++GR ++  VG+++LG VLD+ G+ ++    E +P+  E  + + + +  +  R  VR+ 
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREP  135

Query  169  LDVGVRAINGLLTVGRGQRLGLFAGSGVGKSVLLGMMARFTKADIVVVGLIGERGREVKD  228
            L  GVRAI+GLLT G GQR+G+FA++G GK++L+ M+   T AD+ V+GLIGERGREV +
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  229  FIENILGEEGRARSVIVAAPADTPPLMRLHGAAYATALAEYYREQGLDVLLLMDSVTRYA  288
            F++ + + + + + V+V A +D P++ R ++A  AT++AEY+R+QG  V+L++DS+TRYA
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  289  MAQREIALAIGEPPVTKGYPPSVFARLPQLIEragnaargggaITAFYTVLSEGDDQQDP  348
             A R++ALA GE P  +GYP+SVF  LP+L+E    +A + G+ITAFYTVL E++++ DP
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLE--RPGATSEGSITAFYTVLLESEEEADP  313

Query  349  IADAARAILDGHFVLSRELAEAGHYPAIDIEQSISRVMVDVVEPRQMDLARRFKQLYSRY  408
            +AD  R+ILDGH+ LSR LA  GHYPAID+ +S+SRV  +V  P + + A   ++L +R 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  409  QRNRDLISVGAYVAGSDPMLDEAIRRQLPMVGFLTQPMHESHGYDSCLEQLAT  461
            +  + +I +G Y +G +   D A++ + ++ + L QP+ +  ++D  L  + +
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

769) hrcN in NC_005773


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  217 bits (808),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 171/411 (42%), Positives = 277/411 (68%), Gaps = 11/411 (2%)

Query  35   LLECKIPAAKVGDLCEVSKA---DGSFLLAEIVGFTQECTLLSALGAPDGIQVGAPIRPL  91
            ++E  +    +G+LCE+ ++         A++VG+ +E T+LS +G ++G+  +  + P 
Sbjct  20   IIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPT  79

Query  92   GIAHRIGVDDSLLGCVLDGFGRPLLGDCLGAFAGPDDRRETLPVIADALPPTQRPRIT--  149
            G A    V+ S+LG VLD  G+      +  F+ P+    +   + D  PP+  +R+   
Sbjct  80   GRALSAWVGYSVLGAVLDPTGK-----IVERFT-PEVAPISEERVIDVAPPSYASRVGVR  133

Query  150  NALPTGVRAIDSAILLGEGQRVGLFAGAGCGKTTLMAELARNMGCDVIVFGLIGERGREL  209
            ++L TGVRAID+ +  G GQR+G+FA+AGCGKT LM  L  +   DV+V+GLIGERGRE+
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  210  REFLDHELDETLRARSVLVCATSDRSSMeraraaftataiaeafrarGQKVLLLLDSLTR  269
             EF+D       + + VLV ATSD +S++R  AA  AT++AE FR +G++V+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  270  FARAQREIGIASGEPLGRGGLPPSVYTLLPRLVERAGMSENGSITALYTVLIEQDSMNDP  329
            +ARA R++++ASGE  +R G P+SV+  LPRL+ER+G + +GSITA+YTVL+E +   DP
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  330  VADEVRSLLDGHIVLSRKLAERGHYPAIDVSASISRILSNVTGREHQRANNRLRQLLAAY  389
            +ADE+RS+LDGH+ LSRKLA +GHYPAIDV  S+SR++++VT   H    + +R+L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  390  KQVEMLLRLGEYQAGADPVTDCAVQLNDDINEFLRQDLREPVPLQETLDGL  440
             ++++++ LGEY++G +   D A+Q+ D ++  L Q + +  ++++TL G+
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

770) KKY_2417 in NC_016078


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  217 bits (808),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 144/353 (41%), Positives = 232/353 (66%), Gaps = 14/353 (3%)

Query  86   GHDGAVYPD----EAW-----LGRVLNAEAAPIDGGAPLIRGRAPYALRNLPLPAHERGR  136
            ++D  +YP      AW     LG VL++ +  ++  +P +   +   + +++ P+   +R
Sbjct  71   SRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SR  129

Query  137  VG--RPIDLGVRCLNTFTTCCDGQRMGIFAGSGVGKSVLMSMLARNTDVDISIIGLIGER  194
            VG   P+  GVR ++ + TC  GQRMGIFA++G GK++LM ML  +T+ D+ +IGLIGER
Sbjct  130  VGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGER  189

Query  195  GREVQEFITEQLGEEGMKKAIVVVATSDESALMRRQAAYLTLTLAEYFRDQGKRVLCMMD  254
            GREV EF+    + +   K ++V ATSD +++ R +AA L+ T+AEYFRDQGKRV+  +D
Sbjct  190  GREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFID  249

Query  255  SLTRFAMAQREIGLATGEPPTAKGYPPTVFTELPRLLERAGPGLVNSGSVTGLFTVLVEG  314
            S+TR+A A R+++LA+GE P+ +GYP++VF +LPRLLER  PG  + GS+T+++TVL+E+
Sbjct  250  SMTRYARALRDVALASGERPARRGYPASVFDNLPRLLER--PGATSEGSITAFYTVLLES  307

Query  315  DDHNEPIADAVRGILDGHIVMERSIAERGRYPAVNVLRSVSRTMPGCVPEDFRPTLSRAR  374
            +++ +P+AD +R+ILDGH+ + R +A +G+YPA++VL+SVSR              S  R
Sbjct  308  EEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVR  367

Query  375  ELMSVYADMEELIRLGAYRKGSDPKVDRAIALNPALEAFLSQRSDERTNIADG  427
             LM+   +++ +I LG YR G +   DRA+ +  +L A L Q   + +++ D 
Sbjct  368  KLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

771) Oter_0419 in NC_010571


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  217 bits (809),  Expect = 9e-58, Method: Compositional matrix adjust.
 Identities = 164/405 (41%), Positives = 271/405 (67%), Gaps = 4/405 (0%)

Query  32   VAGLIIESDGPNVGLGELCLVRSPR--SEFTVRAEVVGFREHRVLLMPLGDATGLHVGCE  89
            ++G IIE++  +V++GELC +R  +   +   RA+VVG++ +R +L  +G+A GL  +  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  90   VAACDRPPLPKPGPEMLGRVLDALGRPYDGLG--MLPVDRSVGRDATPPHPLRRQRIHHS  147
            + + +R+  +  G  +LG VLD+ G+  + +   + P+      D +PP    R  ++++
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  148  FQTGVRALDAFTPFGRGQRLGLFAGSGVGKSTLMGMIARGSEADVVVVALVGERGREVRE  207
            + TGVRA+D++   G GQR+G+FA++G GK+ LM M+   +EADV V++L+GERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  208  FIEKDLGPEGLKRAIVVVATSDTpaplrlraaftataiaeawraeGKNVLFMMDSVTRFA  267
            F++   +++   + ++V ATSD P+  R  AA  AT++AE  R +GK V++ +DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  268  MAQREIGLAVGEPAATRGYTPSVFALLPRLLERTGAGELGAITALYTVLVEGDDMNEPVA  327
             A R+++LA GE +A RGY +SVF  LPRLLER GA   G+ITA+YTVL+E+++  +P+A
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMA  315

Query  328  DAVRGILDGHVVLSRALAHFNHYPAIDVLESVSRLIRDVCTPDEVALAAKAREHLALYRK  387
            D +R+ILDGH+ LSR LA   HYPAIDVL SVSR++ +V TP +   A+  R  ++    
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  388  NEDLISIGAYQKGANAALDRAIALHEPLRGFLRQPIEEHTPREQS  432
             + +I +G Y+ G N   DRA+ ++++L++ L QP+ + ++ +++
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

772) fliI in NC_010725


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  216 bits (804),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 142/311 (46%), Positives = 225/311 (73%), Gaps = 8/311 (2%)

Query  106  GRVIDALGRPVDGLGP-LAEGPDSVPLDADPPAAMTRARVRTPLPTGVRAVD-LFTPLCA  163
            G V+D+ G+ V+ + P +A  ++   +D  PP+  +R  VR PL TGVRA+D L+T  C+
Sbjct  93   GAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT--CG  150

Query  164  -GQRIGIFAGSGVGKSTLLAMLAGAEGFDSVVVALVGERGREVREFLEG-PIAASRERAV  221
             GQR+GIFA++G GK+ L+ ML      D  V++L+GERGREV EF++    +  +E+ V
Sbjct  151  VGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCV  210

Query  222  IVVSTGDESPMMRRQAPKVALAVAECFRDRGESVLLIVDSVTRYAHAARDVALAAGEPAV  281
            +V +T+D +++ R +A+++A +VAE FRD+G  V+L++DS+TRYA+A RDVALA+GE + 
Sbjct  211  LVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPA  270

Query  282  ARGYPPSVFSDLPRLLERAGPGAEGSGTITGIFSVLVDGDDHNDPVADSIRGTLDGHVVL  341
             RGYP+SVF +LPRLLER  PGA + G+IT++++VL++++++ DP+AD IR+ LDGH+ L
Sbjct  271  RRGYPASVFDNLPRLLER--PGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYL  328

Query  342  DRAIAEQGRYPAIDLLGSISRLAGEVWTGDQRELVRKLKSMMARFEETRDLRLMGGYRAG  401
             R +A QG+YPAID+L S+SR+ G+V T  + E    ++ +M+R+EE + +  +G YR+G
Sbjct  329  SRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPG  388

Query  402  SDPDLDQAVSL  412
             + D D+A+ +
Sbjct  389  ENIDNDRAMQM  399

773) PSJM300_00930 in NC_018177


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  216 bits (804),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 161/373 (44%), Positives = 245/373 (66%), Gaps = 18/373 (4%)

Query  61   AQVVGFNRDITYLMPFKKPVGLTAGSRVFPAPDDAKLHIDESWLGRVLNGLGEPLDDLGK  120
            AQVVG++R+ T L  + ++ GL+ +  ++P+          +W+G   + LG  LD  GK
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALS-----AWVG--YSVLGAVLDPTGK  101

Query  121  LSGR-----DPLPAE-LPSVHP---LKRKPVSEPLDVGVRAINATLTLGKGQRVGLFAGS  171
            +  R      P++ E +  V P     R  V EPL  GVRAI++ LT G GQR+G+FA++
Sbjct  102  IVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASA  161

Query  172  GVGKSVLLGMITRQTKADVVVVGLIGERGREVQEFLLHSLGEEGLKKAVVVVAPANESPL  231
            G GK++L+ M+  QT ADV V+GLIGERGREV EF+    + +   K V+V A ++ +++
Sbjct  162  GCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSV  221

Query  232  MRLKATELCHSIAGYFRDQGNDVLLLVDSLTRYAMAQREIALALGEPPATKGYPPSVFGM  291
             R +A++L  ++A YFRDQG+ V+L++DS+TRYA A R++ALA GE PA +GYP+SVF+ 
Sbjct  222  DRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDN  281

Query  292  LPELVESAGNGANDNGSLSALYTVLAEGDDQQDPIVDCARAILDGHIVLSRRLADAGHYP  351
            LP L+E +  GA  +GS++A+YTVL E++++ DP+ D  R+ILDGH+ LSR+LA+ GHYP
Sbjct  282  LPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYP  339

Query  352  AIDICASVSRCMSQVGQPSHLGAARQLKEFYSTYEKIKELIPLGGYSPGADAKTDRAVKL  411
            AID+  SVSR  +QV  P+H   A  ++ + +  E ++ +I LG Y PG +   DRA+++
Sbjct  340  AIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQM  399

Query  412  APSIDRFLRQDVG  424
              S+   L Q V+
Sbjct  400  RDSLKAWLCQPVA  412

774) fliI in NC_010465


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  216 bits (805),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 142/333 (43%), Positives = 231/333 (70%), Gaps = 6/333 (1%)

Query  133  LLGRVLDGSAKPLDGLP---APETGYRAPLITPPINPLQRTAIVQVLDVGVRTINALLTV  189
            +LG VLD ++K ++ +    AP +  R   ++PP  +  R ++ + L  GVR+I++LLT 
Sbjct  91   VLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTC  149

Query  190  GRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARS  249
            G GQRMG+FA++G GK++L+ M+   T+ADV+V+GLIGERGREV +F++ + +++ + + 
Sbjct  150  GVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKC  209

Query  250  VVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPP  309
            V++ A +D +++ R ++A  AT +AE FRD+G++V+L++DS+TRYA A R++ALA GE P
Sbjct  210  VLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERP  269

Query  310  ATKGYPPSVFAKLPALVERAGNGVSGGGSITAFYTVLTEGDDQQDPIADSARAILDGHVV  369
            A +GYP+SVF +LP L+ER+G   ++ GSITAFYTVL E++++ DP+AD  R+ILDGH+ 
Sbjct  270  ARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  370  LSRRLAESGHYPAIDIEASISRAMTSLIDDDHYSRVRQFKQLFASYQRNRDLVSVGAYAA  429
            LSR+LA  GHYPAID+  S+SR    +    H  +    ++L +  +  + ++ +G Y +
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  430  GSDPLLDKAIALYPQMEAFLQQGMFERSSFDDA  462
            G +   D+A+ +   + A L Q + + SSFDD+
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

775) fliI in NC_009719


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  216 bits (805),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 145/352 (42%), Positives = 241/352 (69%), Gaps = 11/352 (3%)

Query  91   VYPS----SAW-----LGRVVNAMGEPMDGKGP-IAQGAQPYLLRNMPPPAHTRQRVRGK  140
            +YP+    SAW     LG V+++ G  ++   P +A  ++  ++   PP+  +R  VR  
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREP  135

Query  141  IDLGVRALNTFTTCCRGQRMGIFAGSGVGKSVLLSMLARNTACDVSVIGLIGERGREVQE  200
            +  GVRA++ + TC  GQRMGIFA++G GK++L+ ML  +T  DV VIGLIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  201  FIEDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLSLAEYFRDRDQNVLCMMDSVTRFA  260
            F++   +++   + V+V ATSD P++ R +AA L+ ++AEYFRD+++ V+  +DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  261  VAQREIGLSTGEPPTSKGYTPTVFAELPKLLERAGPGTGSGNITGLFTVLVDGDDHNEPV  320
             A R+++L++GE P+ +GY ++VF +LP+LLER+G +T+ G+IT+++TVL++++++ +P+
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPG-ATSEGSITAFYTVLLESEEEADPM  314

Query  321  ADAVRSILDGHIVMERSIAERGRYPAINVLKSVSRTMPDCNEAEENELIRRARALMATYD  380
            AD +RSILDGH+ + R +A +G+YPAI+VLKSVSR   +   + + E     R LM+  +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  381  DMEELIRLGAYRPGSDPQVDEAIFYQPALEAFLAQNKHDASSLAEGYSALAA  432
            +++ +I LG YRPG + + D A+  + +L A L Q   + SS+ +  S++ A
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

776) fliI in NC_012988


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  216 bits (803),  Expect = 3e-57, Method: Compositional matrix adjust.
 Identities = 148/344 (44%), Positives = 233/344 (68%), Gaps = 13/344 (3%)

Query  106  RPSAAWLGRTVDALGRPIDGLGPLAQ--GPAIYPLRAD------PPPAHGRRRVGPPLDL  157
            R+ +AW+G +V  LG  +D  G + +   P + P+  +      PP+  +R  V  PL  
Sbjct  81   RALSAWVGYSV--LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  158  GVRCINTFLTMC-RGQRMGIFAGSGVGKSVLLSMLARYTAADVAVIGLVGERGREVQEFL  216
            GVR I+ +LT C  GQRMGIFA++G GK++L+ ML   T ADV VIGL+GERGREV EF+
Sbjct  139  GVRAIDGLLT-CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFV  197

Query  217  QDDLGAAGLARSVVVVATSDEPVLMRRNAAYVTLAVAEYFRDQGAQVLCMIDSITRFAMA  276
            +   ++    + V+V ATSD P + R NAA ++ +VAEYFRDQG +V+  IDS+TR+A A
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  277  QRDIGLAGGEPPTAKGYTPTVFSELPRLLERAGPGVGEGAISGLFTVLVEGDDHNEPVAD  336
             RD++LA+GE P+ +GY ++VF +LPRLLER+G + +EG+I++++TVL+E++++ +P+AD
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPG-ATSEGSITAFYTVLLESEEEADPMAD  316

Query  337  AVRGILDGHIVMERRIAEQGRYPAINVLRSVSRTMPRACDPARLPTVRRARKVLATYADM  396
             +R+ILDGH+ + R++A QG+YPAI+VL+SVSR   +   P++       RK+++   ++
Sbjct  317  EIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEEL  376

Query  397  EELIRLGAYRAGSSPEVDEAVALMPDLTAFLGQGKEEATSISEG  440
            + +I LG YR+G + + D A+ +   L A L Q   + +S+ + 
Sbjct  377  QLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

777) fliI in NC_010172


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  216 bits (803),  Expect = 3e-57, Method: Compositional matrix adjust.
 Identities = 148/344 (44%), Positives = 233/344 (68%), Gaps = 13/344 (3%)

Query  106  RPSAAWLGRTVDALGRPIDGLGPLAQ--GPAIYPLRAD------PPPAHGRRRVGPPLDL  157
            R+ +AW+G +V  LG  +D  G + +   P + P+  +      PP+  +R  V  PL  
Sbjct  81   RALSAWVGYSV--LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  158  GVRCINTFLTMC-RGQRMGIFAGSGVGKSVLLSMLARYTAADVAVIGLVGERGREVQEFL  216
            GVR I+ +LT C  GQRMGIFA++G GK++L+ ML   T ADV VIGL+GERGREV EF+
Sbjct  139  GVRAIDGLLT-CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFV  197

Query  217  QDDLGAAGLARSVVVVATSDEPVLMRRNAAYVTLAVAEYFRDQGAQVLCMIDSITRFAMA  276
            +   ++    + V+V ATSD P + R NAA ++ +VAEYFRDQG +V+  IDS+TR+A A
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  277  QRDIGLAGGEPPTAKGYTPTVFSELPRLLERAGPGVGEGAISGLFTVLVEGDDHNEPVAD  336
             RD++LA+GE P+ +GY ++VF +LPRLLER+G + +EG+I++++TVL+E++++ +P+AD
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPG-ATSEGSITAFYTVLLESEEEADPMAD  316

Query  337  AVRGILDGHIVMERRIAEQGRYPAINVLRSVSRTMPRACDPARLPTVRRARKVLATYADM  396
             +R+ILDGH+ + R++A QG+YPAI+VL+SVSR   +   P++       RK+++   ++
Sbjct  317  EIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEEL  376

Query  397  EELIRLGAYRAGSSPEVDEAVALMPDLTAFLGQGKEEATSISEG  440
            + +I LG YR+G + + D A+ +   L A L Q   + +S+ + 
Sbjct  377  QLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

778) fliI in NC_004459


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  216 bits (803),  Expect = 3e-57, Method: Compositional matrix adjust.
 Identities = 160/394 (41%), Positives = 255/394 (65%), Gaps = 12/394 (3%)

Query  43   PIGSLCLVETMTGQME----AEVVGFSGDNLFLMPSEQIGGILPGAKVTPLTSESGLPVG  98
            +IG LC +     Q +    A+VVG+  +   L    +  G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  99   MELLGRVIDGVGNPLD----GLGPIYTEHRASFNAEPINPLARKPITEPLDVGLKAINGL  154
              +LG V+D  G+ ++     ++PI +E+R  ++  P +  +R  + EPL  G++AI+GL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPI-SEERV-IDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  155  LTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGR  214
            LT G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGREV EF++ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  215  KRsvvvaapadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVG  274
             + V+V A +D +++ R ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  275  EPPATKGYPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEGDDLQDPIADASRAILDG  334
            E PA +GYP+SVF +LP L+ER+G  +  +GSITAF+TVL E+++  DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATS--EGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  335  HIVLSREMADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGA  394
            H+ LSR +A+ GHYPAIDV KSVSRV  Q+TT  H   + AVR++++     Q ++ +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  395  YKPGTDPAIDSAFTLKPKLDEYLQQRMKETVPYA  428
            Y+PG +   D A  ++  L   L Q + +  ++ 
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

779) VVMO6_00821 in NC_014965


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  216 bits (803),  Expect = 3e-57, Method: Compositional matrix adjust.
 Identities = 160/394 (41%), Positives = 255/394 (65%), Gaps = 12/394 (3%)

Query  43   PIGSLCLVETMTGQME----AEVVGFSGDNLFLMPSEQIGGILPGAKVTPLTSESGLPVG  98
            +IG LC +     Q +    A+VVG+  +   L    +  G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  99   MELLGRVIDGVGNPLD----GLGPIYTEHRASFNAEPINPLARKPITEPLDVGLKAINGL  154
              +LG V+D  G+ ++     ++PI +E+R  ++  P +  +R  + EPL  G++AI+GL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPI-SEERV-IDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  155  LTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGR  214
            LT G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGREV EF++ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  215  KRsvvvaapadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVG  274
             + V+V A +D +++ R ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  275  EPPATKGYPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEGDDLQDPIADASRAILDG  334
            E PA +GYP+SVF +LP L+ER+G  +  +GSITAF+TVL E+++  DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATS--EGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  335  HIVLSREMADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGA  394
            H+ LSR +A+ GHYPAIDV KSVSRV  Q+TT  H   + AVR++++     Q ++ +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  395  YKPGTDPAIDSAFTLKPKLDEYLQQRMKETVPYA  428
            Y+PG +   D A  ++  L   L Q + +  ++ 
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

780) fliI in NC_005139


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  216 bits (803),  Expect = 3e-57, Method: Compositional matrix adjust.
 Identities = 160/394 (41%), Positives = 255/394 (65%), Gaps = 12/394 (3%)

Query  43   PIGSLCLVETMTGQME----AEVVGFSGDNLFLMPSEQIGGILPGAKVTPLTSESGLPVG  98
            +IG LC +     Q +    A+VVG+  +   L    +  G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  99   MELLGRVIDGVGNPLD----GLGPIYTEHRASFNAEPINPLARKPITEPLDVGLKAINGL  154
              +LG V+D  G+ ++     ++PI +E+R  ++  P +  +R  + EPL  G++AI+GL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPI-SEERV-IDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  155  LTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGR  214
            LT G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGREV EF++ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  215  KRsvvvaapadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVG  274
             + V+V A +D +++ R ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  275  EPPATKGYPPSVFAKLPALVERAGNGGPQQGSITAFFTVLTEGDDLQDPIADASRAILDG  334
            E PA +GYP+SVF +LP L+ER+G  +  +GSITAF+TVL E+++  DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATS--EGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  335  HIVLSREMADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGA  394
            H+ LSR +A+ GHYPAIDV KSVSRV  Q+TT  H   + AVR++++     Q ++ +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  395  YKPGTDPSIDSAFTLKPKLDEYLQQRMKETVPYA  428
            Y+PG +   D A  ++  L   L Q + +  ++ 
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

781) fliI in NC_008228


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  215 bits (802),  Expect = 3e-57, Method: Compositional matrix adjust.
 Identities = 160/380 (43%), Positives = 257/380 (68%), Gaps = 8/380 (2%)

Query  59   AEVVGFAEHITYLMPTQAVKGIVPGSRVQPLNREQGLPVGMSLLGRVVDGNGQPLD----  114
            A+VVG+  + T L      +G+  +  + P  R  +  VG S+LG V+D  G+ ++    
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  115  GLGAIKAEKRVPLTRPPMNPLSRKPIREPLDVGVRAINSMITVGSGQRMGLFAGSGVGKS  174
             +++I  E+ + ++ P+    SR  +REPL  GVRAI++++T G GQRMG+FA++G GK+
Sbjct  109  EVAPISEERVIDVAPPSYA--SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKT  166

Query  175  VLLGMMTRGTSADvvvvglvgergrevKEFIQDILGDEERQKSVVVAAPADTSPLMRLKG  234
            +L+ M+   T ADV V+GL+GERGREV EF++ + + + ++K V+V A +D +++ R ++
Sbjct  167  MLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNA  226

Query  235  CETAVTIAEYFRDKGMNVLLLVDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
             + A T+AEYFRD+G  V+L++DS+TRYA A R++ALA GE PA +GYP+SVF  LP L+
Sbjct  227  AQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLL  286

Query  295  ERAGNGGEHQGSITAFYTVLTEGDDLQDPIADSARAILDGHIVLSRQLADSGHYPAIDIE  354
            ER+G  +E  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR+LA+ GHYPAID+ 
Sbjct  287  ERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVL  344

Query  355  ASISRVMPMVVSPEHVQVARRIRQVYSTYQQNRDLISIGAYTRGNDPRIDLSIKAEPAIN  414
             S+SRV   V +P H + A  +R++ +  ++ + +I +G Y  G++   D +++   +++
Sbjct  345  KSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLK  404

Query  415  AFLQQGMQQILPFDESVETM  434
            A L Q + Q  +FD+++  M
Sbjct  405  AWLCQPVAQYSSFDDTLSGM  424

782) fliI in NC_013949


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  215 bits (800),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 145/341 (43%), Positives = 235/341 (69%), Gaps = 8/341 (2%)

Query  94   VGKDVLGRVIDPLGNPID----EKGPITTSAHIPIISQPIKAMRRGVIDEVFSVGIKAID  149
            VG  VLG V+DP G+ ++    E +PI+   ++  ++ P  A R GV + +++ G++AID
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPIS-EERVIDVAPPSYASRVGVREPLIT-GVRAID  144

Query  150  GLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGSKAPIKVVALIGERGREVPEFIQK-NLDN  208
            GLLTCG GQ++GIFA++G GK+ LM M++  + A + V++LIGERGREV EF++     +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  209  NLENTVIVVATSDDSALMRKYGAFSAMAVAEFFKNQGHDVLFIMDSVTRFAMAQREIGLA  268
            + E+ V+V ATSD +++ R  +A  A +VAE+F++QG  V++++DS+TR+A A R+++LA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  269  LGEPPTSKGYPPSVLALLPQLMERAGKEEGRGSITAFFTVLVEGDDLSDPIADQSRSILD  328
             GE P+ +GYP+SV+  LP+L+ER+G   + GSITAF+TVL+E+++ +DP+AD+ RSILD
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPG-ATSEGSITAFYTVLLESEEEADPMADEIRSILD  323

Query  329  GHIVLSRELTDFGIYPPIHILNSASRVSNDIITKEHRNAAKNFRKLYALLKENEVLIRIG  388
            GH+ LSR L++ G YP+I++L+S SRV  ++ T  H + A   RKL + L E +++I +G
Sbjct  324  GHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLG  383

Query  389  SYQKGTDPDLDEAIEKKKFMEDFITQEEDQLFDFDAIIEEL  429
             Y+ G + D D A++ +  +   + Q   Q   FD  +  +
Sbjct  384  EYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

783) N646_1353 in NC_022349


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  215 bits (800),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 256/393 (66%), Gaps = 10/393 (2%)

Query  42   PIGSLCLVETMSGQME----AEVVGFSGDNLFLMPSEQITGILPGARVTPLTSDAGLPVG  97
            +IG LC +     Q +    A+VVG+  +   L    +  G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  98   MELLGRVIDGVGNPLDGLGP---LYTDHRASFNAEPINPLARKPISEPLDVGLKAINGLL  154
              +LG V+D  G+ ++ + P     +++R  ++  P +  +R  + EPL  G++AI+GLL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  155  TVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGrr  214
            T G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGREV EF++ + + + + 
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  215  rsvvvaapadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGE  274
            + V+V A +D +++ R ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ GE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  275  PPATKGYPPSVFAKLPALVERAGNGSAEQGSITAFFTVLTEGDDLQDPIADASRAILDGH  334
             PA +GYP+SVF +LP L+ER+  G++ +GSITAF+TVL E+++  DP+AD  R+ILDGH
Sbjct  268  RPARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  335  IVLSREMADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAY  394
            + LSR +A+ GHYPAIDV KSVSRV  Q+TT  H   + AVR++++     Q ++ +G Y
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  395  KPGTDPAIDGAFTLKPKLDEYLQQSMKESVPYD  427
            +PG +   D A  ++  L   L Q++ +  ++D
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

784) VEA_002818 in NC_013456


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  215 bits (800),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 256/393 (66%), Gaps = 10/393 (2%)

Query  42   PIGSLCLVETMSGQME----AEVVGFSGDNLFLMPSEQITGILPGARVTPLTSDAGLPVG  97
            +IG LC +     Q +    A+VVG+  +   L    +  G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  98   MELLGRVIDGVGNPLDGLGP---LYTDHRASFNAEPINPLARKPISEPLDVGLKAINGLL  154
              +LG V+D  G+ ++ + P     +++R  ++  P +  +R  + EPL  G++AI+GLL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  155  TVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGrr  214
            T G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGREV EF++ + + + + 
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  215  rsvvvaapadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGE  274
            + V+V A +D +++ R ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ GE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  275  PPATKGYPPSVFAKLPALVERAGNGSAEQGSITAFFTVLTEGDDLQDPIADASRAILDGH  334
             PA +GYP+SVF +LP L+ER+  G++ +GSITAF+TVL E+++  DP+AD  R+ILDGH
Sbjct  268  RPARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  335  IVLSREMADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAY  394
            + LSR +A+ GHYPAIDV KSVSRV  Q+TT  H   + AVR++++     Q ++ +G Y
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  395  KPGTDPAIDGAFTLKPKLDEYLQQSMKESVPYD  427
            +PG +   D A  ++  L   L Q++ +  ++D
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

785) Glaag_1284 in NC_015497


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  215 bits (799),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 159/380 (42%), Positives = 257/380 (68%), Gaps = 8/380 (2%)

Query  59   AEVVGFAEHITYLMPTQAVKGIVPGSRVQPLNREQGLPVGMSLLGRVVDGNGQPLD----  114
            A+VVG+  + T L      +G+  +  + P  R  +  VG S+LG V+D  G+ ++    
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  115  GLGAIKAEKRVPLTRPPMNPLSRKPIREPLDVGVRAINSMITVGSGQRMGLFAGSGVGKS  174
             +++I  E+ + ++ P+    SR  +REPL  GVRAI++++T G GQRMG+FA++G GK+
Sbjct  109  EVAPISEERVIDVAPPSYA--SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKT  166

Query  175  VLLGMMTRGTSADvvvvglvgergrevKEFIQDILGDEERQKAVVVAAPADTSPLMRLKG  234
            +L+ M+   T ADV V+GL+GERGREV EF++ + + + ++K V+V A +D +++ R ++
Sbjct  167  MLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNA  226

Query  235  CETAVTIAEYFRDKGMNVLLLVDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALV  294
             + A T+AEYFRD+G  V+L++DS+TRYA A R++ALA GE PA +GYP+SVF  LP L+
Sbjct  227  AQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLL  286

Query  295  ERAGNGGENQGSITAFYTVLTEGDDLQDPIADSARAILDGHIVLSRQLADSGHYPAIDIE  354
            ER+G  +E  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR+LA+ GHYPAID+ 
Sbjct  287  ERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVL  344

Query  355  ASISRVMPMVVSPEHVQVARRIRQVYSTYQQNRDLISIGAYTRGNDPRIDLSIKAEPAIN  414
             S+SRV   V +P H + A  +R++ +  ++ + +I +G Y  G++   D +++   +++
Sbjct  345  KSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLK  404

Query  415  AFLQQGMQQILTFEESVETM  434
            A L Q + Q  +F++++  M
Sbjct  405  AWLCQPVAQYSSFDDTLSGM  424

786) EcolC_3379 in NC_010468


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  214 bits (796),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 152/377 (41%), Positives = 247/377 (66%), Gaps = 20/377 (5%)

Query  44   GQLCRIESA---NHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGES  100
            G+LC I  +   ++ +  AQ VG++R+ T L  + ++ GL  +  ++P  +A       +
Sbjct  31   GELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALS-----A  85

Query  101  WLGRVVNGLGEPLDGKGRL------NGNDllpplppSVNP---LTRRSVDEPLDVGVKAI  151
            W+G  V  LG  LD  G++      +   +       V P    +R +V EPL  GV+AI
Sbjct  86   WVGYSV--LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAI  143

Query  152  NGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGA  211
            +GLLT G GQR+G+ A++G GK++L+ M+  QT AD+ V+GLIGERGREV EF+D   ++
Sbjct  144  DGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRAS  203

Query  212  DGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIAL  271
            +   K ++V A +D +++ R +A++L  ++A  FRD+G +V+L++DS+TRYA A R++AL
Sbjct  204  HKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVAL  263

Query  272  SLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPIVDCARAVL  331
            + GE PA +GYP+S F+ +P+L+E +G + S GS+TA+YTVL E++++ DP+ D  R++L
Sbjct  264  ASGERPARRGYPASVFDNLPRLLERPGAT-SEGSITAFYTVLLESEEEADPMADEIRSIL  322

Query  332  DGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYMEIKPLIPL  391
            DGH+ L+RKLA  GHYPAID+ +S+SR   QVT+  H + A A+++  +   E++ +I L
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  392  GGYVAGADASVDKAVKM  408
            G Y +G +   D+A++M
Sbjct  383  GEYRPGENIDNDRAMQM  399

787) lgiI in NC_011751


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  214 bits (796),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 152/377 (41%), Positives = 247/377 (66%), Gaps = 20/377 (5%)

Query  44   GQLCRIESA---NHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGES  100
            G+LC I  +   ++ +  AQ VG++R+ T L  + ++ GL  +  ++P  +A       +
Sbjct  31   GELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALS-----A  85

Query  101  WLGRVVNGLGEPLDGKGRL------NGNDllpplppSVNP---LTRRSVDEPLDVGVKAI  151
            W+G  V  LG  LD  G++      +   +       V P    +R +V EPL  GV+AI
Sbjct  86   WVGYSV--LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAI  143

Query  152  NGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGA  211
            +GLLT G GQR+G+ A++G GK++L+ M+  QT AD+ V+GLIGERGREV EF+D   ++
Sbjct  144  DGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRAS  203

Query  212  DGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIAL  271
            +   K ++V A +D +++ R +A++L  ++A  FRD+G +V+L++DS+TRYA A R++AL
Sbjct  204  HKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVAL  263

Query  272  SLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPIVDCARAVL  331
            + GE PA +GYP+S F+ +P+L+E +G + S GS+TA+YTVL E++++ DP+ D  R++L
Sbjct  264  ASGERPARRGYPASVFDNLPRLLERPGAT-SEGSITAFYTVLLESEEEADPMADEIRSIL  322

Query  332  DGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLDHQQSARALKQNYAAYMEIKPLIPL  391
            DGH+ L+RKLA  GHYPAID+ +S+SR   QVT+  H + A A+++  +   E++ +I L
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  392  GGYVAGADASVDKAVKM  408
            G Y +G +   D+A++M
Sbjct  383  GEYRPGENIDNDRAMQM  399

788) fliI in NC_017663


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  214 bits (797),  Expect = 8e-57, Method: Compositional matrix adjust.
 Identities = 152/377 (41%), Positives = 247/377 (66%), Gaps = 20/377 (5%)

Query  3    GQLCRIESA---NHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGES  59
            G+LC I  +   ++ +  AQ VG++R+ T L  + ++ GL  +  ++P  +A       +
Sbjct  31   GELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALS-----A  85

Query  60   WLGRVVNGLGEPLDGKGRL------NGNDllpplppSVNP---LTRRSVDEPLDVGVKAI  110
            W+G  V  LG  LD  G++      +   +       V P    +R +V EPL  GV+AI
Sbjct  86   WVGYSV--LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAI  143

Query  111  NGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGA  170
            +GLLT G GQR+G+ A++G GK++L+ M+  QT AD+ V+GLIGERGREV EF+D   ++
Sbjct  144  DGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRAS  203

Query  171  DGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIAL  230
            +   K ++V A +D +++ R +A++L  ++A  FRD+G +V+L++DS+TRYA A R++AL
Sbjct  204  HKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVAL  263

Query  231  SLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPIVDCARAVL  290
            + GE PA +GYP+S F+ +P+L+E +G + S GS+TA+YTVL E++++ DP+ D  R++L
Sbjct  264  ASGERPARRGYPASVFDNLPRLLERPGAT-SEGSITAFYTVLLESEEEADPMADEIRSIL  322

Query  291  DGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYMEIKPLIPL  350
            DGH+ L+RKLA  GHYPAID+ +S+SR   QVT+  H + A A+++  +   E++ +I L
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  351  GGYVAGADASVDKAVKM  367
            G Y +G +   D+A++M
Sbjct  383  GEYRPGENIDNDRAMQM  399

789) VPBB_2064 in NC_019955


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  214 bits (797),  Expect = 8e-57, Method: Compositional matrix adjust.
 Identities = 161/394 (41%), Positives = 256/394 (65%), Gaps = 12/394 (3%)

Query  42   PIGSLCLVETMSGHME----AEVVGFSGDNLYLMPSEQITGILPGAKVTPLTSEAGLPVG  97
            +IG LC +     + +    A+VVG+  +   L    +  G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  98   MELLGRVIDGVGNPLD----GLGPIYTEHRASFNAEPINPLARKPISEPLDVGLKAINGL  153
              +LG V+D  G+ ++     ++PI +E+R  ++  P +  +R  + EPL  G++AI+GL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPI-SEERV-IDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  154  LTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGr  213
            LT G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGREV EF++ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  214  rrsvvvaapadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVG  273
             + V+V A +D +++ R ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  274  EPPATKGYPPSVFAKLPALVERAGNGSPEQGSITAFFTVLTEGDDLQDPIADASRAILDG  333
            E PA +GYP+SVF +LP L+ER+G  S  +GSITAF+TVL E+++  DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATS--EGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  334  HIVLSREMADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGA  393
            H+ LSR +A+ GHYPAIDV KSVSRV  Q+TT  H   + AVR++++     Q ++ +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  394  YKPGTDPAIDGAFTLKPKLDEYLQQRMKESVPYD  427
            Y+PG +   D A  ++  L   L Q + +  ++D
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

790) fliI in NC_021847


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  214 bits (797),  Expect = 8e-57, Method: Compositional matrix adjust.
 Identities = 161/394 (41%), Positives = 256/394 (65%), Gaps = 12/394 (3%)

Query  42   PIGSLCLVETMSGHME----AEVVGFSGDNLYLMPSEQITGILPGAKVTPLTSEAGLPVG  97
            +IG LC +     + +    A+VVG+  +   L    +  G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  98   MELLGRVIDGVGNPLD----GLGPIYTEHRASFNAEPINPLARKPISEPLDVGLKAINGL  153
              +LG V+D  G+ ++     ++PI +E+R  ++  P +  +R  + EPL  G++AI+GL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPI-SEERV-IDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  154  LTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGr  213
            LT G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGREV EF++ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  214  rrsvvvaapadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVG  273
             + V+V A +D +++ R ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  274  EPPATKGYPPSVFAKLPALVERAGNGSPEQGSITAFFTVLTEGDDLQDPIADASRAILDG  333
            E PA +GYP+SVF +LP L+ER+G  S  +GSITAF+TVL E+++  DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATS--EGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  334  HIVLSREMADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGA  393
            H+ LSR +A+ GHYPAIDV KSVSRV  Q+TT  H   + AVR++++     Q ++ +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  394  YKPGTDPAIDGAFTLKPKLDEYLQQRMKESVPYD  427
            Y+PG +   D A  ++  L   L Q + +  ++D
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

791) fliI in NC_004603


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  214 bits (797),  Expect = 8e-57, Method: Compositional matrix adjust.
 Identities = 161/394 (41%), Positives = 256/394 (65%), Gaps = 12/394 (3%)

Query  42   PIGSLCLVETMSGHME----AEVVGFSGDNLYLMPSEQITGILPGAKVTPLTSEAGLPVG  97
            +IG LC +     + +    A+VVG+  +   L    +  G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  98   MELLGRVIDGVGNPLD----GLGPIYTEHRASFNAEPINPLARKPISEPLDVGLKAINGL  153
              +LG V+D  G+ ++     ++PI +E+R  ++  P +  +R  + EPL  G++AI+GL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPI-SEERV-IDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  154  LTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGr  213
            LT G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGREV EF++ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  214  rrsvvvaapadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVG  273
             + V+V A +D +++ R ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  274  EPPATKGYPPSVFAKLPALVERAGNGSPEQGSITAFFTVLTEGDDLQDPIADASRAILDG  333
            E PA +GYP+SVF +LP L+ER+G  S  +GSITAF+TVL E+++  DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATS--EGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  334  HIVLSREMADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGA  393
            H+ LSR +A+ GHYPAIDV KSVSRV  Q+TT  H   + AVR++++     Q ++ +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  394  YKPGTDPAIDGAFTLKPKLDEYLQQRMKESVPYD  427
            Y+PG +   D A  ++  L   L Q + +  ++D
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

792) lfiI in NC_010498


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  214 bits (797),  Expect = 9e-57, Method: Compositional matrix adjust.
 Identities = 153/377 (41%), Positives = 247/377 (66%), Gaps = 20/377 (5%)

Query  44   GQLCRIESA---NHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGES  100
            G+LC I  +   ++ +  AQ VG++R+ T L  + ++ GL  +  ++P  +A       +
Sbjct  31   GELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALS-----A  85

Query  101  WLGRVVNGLGEPLDGKGRL------NGNDllpplppSVNP---LTRRSVDEPLDVGVKAI  151
            W+G  V  LG  LD  G++      +   +       V P    +R +V EPL  GV+AI
Sbjct  86   WVGYSV--LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAI  143

Query  152  NGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGA  211
            +GLLT G GQR+G+ A++G GK++L+ M+  QT AD+ V+GLIGERGREV EF+D   ++
Sbjct  144  DGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRAS  203

Query  212  DGLAKSIVVVAPADESPLMRLKATELCHSVAAWFRDRGHHVLLLVDSLTRYAMAQREIAL  271
            +   K ++V A +D +++ R +A++L  +VA  FRD+G +V+L++DS+TRYA A R++AL
Sbjct  204  HKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVAL  263

Query  272  SLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPIVDCARAVL  331
            + GE PA +GYP+S F+ +P+L+E +G + S GS+TA+YTVL E++++ DP+ D  R++L
Sbjct  264  ASGERPARRGYPASVFDNLPRLLERPGAT-SEGSITAFYTVLLESEEEADPMADEIRSIL  322

Query  332  DGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYMEIKPLIPL  391
            DGH+ L+RKLA  GHYPAID+ +S+SR   QVT+  H + A A+++  +   E++ +I L
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  392  GGYVAGADASVDKAVKM  408
            G Y +G +   D+A++M
Sbjct  383  GEYRPGENIDNDRAMQM  399

793) fliI in NC_022269


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  214 bits (797),  Expect = 9e-57, Method: Compositional matrix adjust.
 Identities = 158/393 (41%), Positives = 254/393 (65%), Gaps = 10/393 (2%)

Query  42   PIGSLCLVETMSGHME----AEVVGFSGDNLFLMPSEQITGILPGAKVTPLTSEAGLPVG  97
            +IG LC +     + +    A+VVG+  +   L    +  G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  98   MELLGRVIDGVGNPLDGLGP---LYTDHRASFNAEPINPLARKPISEPLDVGLKAINGLL  154
              +LG V+D  G+ ++ + P     +++R  ++  P +  +R  + EPL  G++AI+GLL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  155  TVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGrr  214
            T G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGREV EF++ + + + + 
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  215  rsvvvaapadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGE  274
            + V+V A +D +++ R ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ GE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  275  PPATKGYPPSVFAKLPALVERAGNGGDDQGSITAFFTVLTEGDDLQDPIADASRAILDGH  334
             PA +GYP+SVF +LP L+ER+G  ++  GSITAF+TVL E+++  DP+AD  R+ILDGH
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  335  IVLSREMADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAY  394
            + LSR +A+ GHYPAIDV KSVSRV  Q+TT  H   + AVR++++     Q ++ +G Y
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  395  KPGTDPAIDGAFTLKPKLDEYLQQRMKESVPYD  427
            +PG +   D A  ++  L   L Q + +  ++D
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

794) fliI in NC_009783


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  214 bits (797),  Expect = 9e-57, Method: Compositional matrix adjust.
 Identities = 158/393 (41%), Positives = 254/393 (65%), Gaps = 10/393 (2%)

Query  42   PIGSLCLVETMSGHME----AEVVGFSGDNLFLMPSEQITGILPGAKVTPLTSEAGLPVG  97
            +IG LC +     + +    A+VVG+  +   L    +  G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  98   MELLGRVIDGVGNPLDGLGP---LYTDHRASFNAEPINPLARKPISEPLDVGLKAINGLL  154
              +LG V+D  G+ ++ + P     +++R  ++  P +  +R  + EPL  G++AI+GLL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVREPLITGVRAIDGLL  147

Query  155  TVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGrr  214
            T G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGREV EF++ + + + + 
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  215  rsvvvaapadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVGE  274
            + V+V A +D +++ R ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ GE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  275  PPATKGYPPSVFAKLPALVERAGNGGDDQGSITAFFTVLTEGDDLQDPIADASRAILDGH  334
             PA +GYP+SVF +LP L+ER+G  ++  GSITAF+TVL E+++  DP+AD  R+ILDGH
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  335  IVLSREMADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGAY  394
            + LSR +A+ GHYPAIDV KSVSRV  Q+TT  H   + AVR++++     Q ++ +G Y
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  395  KPGTDPAIDGAFTLKPKLDEYLQQRMKESVPYD  427
            +PG +   D A  ++  L   L Q + +  ++D
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

795) fliI in NC_021848


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  214 bits (797),  Expect = 9e-57, Method: Compositional matrix adjust.
 Identities = 161/394 (41%), Positives = 256/394 (65%), Gaps = 12/394 (3%)

Query  42   PIGSLCLVETMSGHME----AEVVGFSGDNLYLMPSEQITGILPGAKVTPLTSEAGLPVG  97
            +IG LC +     + +    A+VVG+  +   L    +  G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  98   MELLGRVIDGVGNPLD----GLGPIYTEHRASFNAEPINPLARKPISEPLDVGLKAINGL  153
              +LG V+D  G+ ++     ++PI +E+R  ++  P +  +R  + EPL  G++AI+GL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPI-SEERV-IDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  154  LTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKEFIEEILGEDGr  213
            LT G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGREV EF++ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  214  rrsvvvaapadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVG  273
             + V+V A +D +++ R ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  274  EPPATKGYPPSVFAKLPALVERAGNGSPEQGSITAFFTVLTEGDDLQDPIADASRAILDG  333
            E PA +GYP+SVF +LP L+ER+G  S  +GSITAF+TVL E+++  DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATS--EGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  334  HIVLSREMADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGA  393
            H+ LSR +A+ GHYPAIDV KSVSRV  Q+TT  H   + AVR++++     Q ++ +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  394  YKPGTDPAIDGAFTLKPKLDEYLQQRMKESVPYD  427
            Y+PG +   D A  ++  L   L Q + +  ++D
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

796) Aave_4392 in NC_008752


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  213 bits (793),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 154/342 (46%), Positives = 242/342 (71%), Gaps = 4/342 (1%)

Query  129  VGDGLLGRVVDSQGLPLDHGGP-VQDVSSEP-MDRRQINAMDRDPVRQMLDTGVRAINAL  186
            VG ++LG V+D+ G  +++  P V  +S E  +D    +   R  VR+ L TGVRAI++L
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  187  LTVGRGQRLGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKEFVEDILGEQDR  246
            LT G GQR+G+FA++G GK++L+ M+   T+ADV+V+GLIGERGREV EFV+ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  247  ERavvvaapadappLLRMQGAAYATAIAEHFRDKGKHVLLLMDSLTRYAMAQREIALAIG  306
            E+ V+V A +D P++ R ++A  AT++AE FRD+GK+V+L++DS+TRYA A R++ALA G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  307  EPPATKGYPPSCFAKLPALVERSGNGLHGVGSITAFYTVLSEGDDQQDPIADSARAILDG  366
            E PA +GYP+S F +LP L+ER+G    + GSITAFYTVL E++++ DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGAT--SEGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  367  HIVLSRALAETGHFPAIDIEQSASRVMHNVASREHFDLARRFRAVYSRYQKSRDLIQVGA  426
            H+ LSR LA  GH+PAID+ +S SRV  +V++  H + A   R + +R +  + +I++G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  427  YMSGSDPALDEAIRLQPAMAAFLQQNMFEAAPMQDSLHAMAA  468
            Y +G +   D A++++ ++ A L Q + + ++ +D+L +M A
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

797) fliI in NC_004757


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  213 bits (794),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 146/354 (42%), Positives = 243/354 (69%), Gaps = 8/354 (2%)

Query  127  AADRTKHISVGPELLGRVLNGSGDPLDRY----GPLHCGHSVPLYSRPFNPLERAPIEKT  182
            +++R+    VG  +LG VL+ +G  ++R+    +P+   + + + + ++ +  R  +   
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREP  135

Query  183  LDVGVRAINTLLSVGRGQRMGLFAGSGVGKSVLLGMMARYTSADVIVVGLIGERGREVQE  242
            L  GVRAI+ LL+ G GQRMG+FA++G GK++L+ M+   T ADV+V+GLIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  243  FIEHILGPEGLARSVVVAAPADTSPLMRLHGAAYATAIAEYFRDEGKHVLLIMDSLTRVA  302
            F++ + +++   + V+V A +D +++ R ++A  AT++AEYFRD+GK+V+L++DS+TR A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  303  MAQREISLAIGEPPATKGYPPSVFARLPQLVERAGNGRRGSGSITAFYTVLTEnddpndp  362
             A R+++LA GE PA +GYP+SVF  LP+L+ER+G    + GSITAFYTVL E+++  DP
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGAT--SEGSITAFYTVLLESEEEADP  313

Query  363  iadnaRAILDGHIVLSRRLAEAGHYPAIDIEASISRVMASLVTREQLGQAQRFKALYSRY  422
            +AD+ R+ILDGH+ LSR+LA  GHYPAID+  S+SRV + + T  +  QA   + L +R 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  423  QRSHDLISVGAYASGSDPQLDRAIELYPVLESFLQQGMFEQESYIESMEKLSAL  476
            +  + +I +G Y +G + + DRA+++   L + L Q + +  S+ +++  ++A+
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

798) R2APBS1_2994 in NC_020541


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  213 bits (792),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 159/385 (42%), Positives = 261/385 (68%), Gaps = 5/385 (1%)

Query  70   TEVVGFADERLLLMPVGDMHGVLPNARVRPYARSGGLPVGMGLLGRVIGADGVPLDGLGA  129
            ++VVG+  ER +L  +G+ +G+  +  + P +R+ +  VG ++LG V+++ G  ++ + +
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  130  --LEADEHAALKREPINPMARKPIDAPLDVGVRAINALLTVGRGQRLGLFAGSGVGKSTL  187
                  E+  +   P +  +R  +  PL  GVRAI++LLT G GQR+G+FA++G GK+ L
Sbjct  109  EVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTML  168

Query  188  LGMMTRYTNADVVVVGLIGERGREVKEFVEHTLGEEGrrravivaapadappLKRLRGAQ  247
            + M+   T+ADV V+GLIGERGREV EFV+   + + + + V+V A +D P++ R  +AQ
Sbjct  169  MHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQ  228

Query  248  YATAIAEWFRDRGQRVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAMMPALVER  307
             AT++AE FRD+G+RV+L++DS+TRYA+A R++ALA GE PA +GYP+SVF  +P L+ER
Sbjct  229  LATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLER  288

Query  308  AGNDADGRGSITAFYTVLTEGDDYRHDPIADAARAILDGHIVLSRDLAEAGHYPAIDIEA  367
            +G  ++  GSITAFYTVL E+++   DP+AD  R+ILDGH+ LSR LA  GHYPAID+  
Sbjct  289  PGATSE--GSITAFYTVLLESEE-EADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  368  SISRVMPAVVAREHLRAAQCFRQVYSAYRQQRDLIAVGAYQKGSDPQVDQAIELWPQLRA  427
            S+SRV   V +  H   A   R++ +   + + +I +G Y+ G + + D+A++++  L+A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  428  FLQQEVDEPMTLEAAVGKLDALAQQ  452
             L Q V +  +++ +++ ++A+A+Q
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAFADQ  430

799) lfiI in NC_017626


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  213 bits (794),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 152/377 (41%), Positives = 247/377 (66%), Gaps = 20/377 (5%)

Query  44   GQLCRIESA---NHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGES  100
            G+LC I  +   ++ +  AQ VG++R+ T L  + ++ GL  +  ++P  +A       +
Sbjct  31   GELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALS-----A  85

Query  101  WLGRVVNGLGEPLDGKGRL------NGNDllpplppSVNP---LTRRSVDEPLDVGVKAI  151
            W+G  V  LG  LD  G++      +   +       V P    +R +V EPL  GV+AI
Sbjct  86   WVGYSV--LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAI  143

Query  152  NGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGA  211
            +GLLT G GQR+G+ A++G GK++L+ M+  QT AD+ V+GLIGERGREV EF+D   ++
Sbjct  144  DGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRAS  203

Query  212  DGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIAL  271
            +   K ++V A +D +++ R +A++L  ++A  FRD+G +V+L++DS+TRYA A R++AL
Sbjct  204  HKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVAL  263

Query  272  SLGEPPATKGYPPSAFGMIPKLVESAGNSESSGSMTAIYTVLAEGDDQQDPIVDCARAVL  331
            + GE PA +GYP+S F+ +P+L+E +G + S GS+TA+YTVL E++++ DP+ D  R++L
Sbjct  264  ASGERPARRGYPASVFDNLPRLLERPGAT-SEGSITAFYTVLLESEEEADPMADEIRSIL  322

Query  332  DGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYMEIKPLIPL  391
            DGH+ L+RKLA  GHYPAID+ +S+SR   QVT+  H + A A+++  +   E++ +I L
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  392  GGYVAGADASVDKAVKM  408
            G Y +G +   D+A++M
Sbjct  383  GEYRPGENIDNDRAMQM  399

800) C427_3666 in NC_020514


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  213 bits (794),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 164/407 (41%), Positives = 265/407 (66%), Gaps = 12/407 (2%)

Query  41   QMPVGSQCLI----QTMEGEIEAEVVGFAENITYLMPTEAVKGIVPGSRVQPLNREQGLA  96
            ++++G  C I    +  +    A+VVG+  + T L      +G+  +  + P  R  +  
Sbjct  27   DVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  97   VGMELLGRVVDGNGQPLD----GLGPIKAEKRVPLSKPPMNPLLRKPIKQPLDVGVRAIN  152
            VG  +LG V+D  G+ ++     ++PI  E+ + ++ P+  +  R  +++PL  GVRAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAID  144

Query  153  SIVTVGLGQRMGLFAGSGVGKSVLMGMMTRGTAADvvvvglvgergrevKEFIQDILGEE  212
            +++T G+GQRMG+FA++G GK++LM M+   T ADV V+GL+GERGREV EF++ + + +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  213  ERAKSVVVAAPADTSPLMRLKGCETAVTIAEYFRDKGLNVLLLIDSLTRYAMAQREIALA  272
             + K V+V A +D +++ R ++ + A T+AEYFRD+G  V+L+IDS+TRYA A R++ALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  273  VGEPPATKGYPPSVFARLPALVERAGNGSENQGSITAFYTVLTEGDDLQDPIADAARAIL  332
             GE PA +GYP+SVF  LP L+ER+G  SE  GSITAFYTVL E+++  DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSIL  322

Query  333  DGHIVLSRSLADSGHYPAIDIEASISRVMPMVVSEEHVQGARRIRQVYSNYQRNRDLISI  392
            DGH+ LSR LA+ GHYPAID+  S+SRV   V +  H + A  +R++ +  +  + +I +
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  393  GAYSKGTDPRIDLAINAEPAINAFLQQGVQQIIDFDHSTADMATLSG  439
            G Y  G +   D A++   +++A L Q V Q   FD++ ++M ++++
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

801) Psefu_3037 in NC_015556


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  213 bits (792),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 170/424 (41%), Positives = 276/424 (66%), Gaps = 25/424 (5%)

Query  30   KVSGLLLESLGCQRTTGQRCHIEQG---DGCLLEAQVVGFNRDITYLMPFKKPVGLGAGS  86
            K++G ++E+   + + G+ C+I +G      +  AQVVG++R+ T L  + ++ GL+ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  87   RVFPAADEASLQIDESWLGRVINGLGEPLDGLGKLTGRDSLSQELPTVNPLR--------  138
             ++P++   S     +W+G   + LG  LD  GK+  R  ++ E++ ++  R        
Sbjct  75   VLYPTGRALS-----AWVG--YSVLGAVLDPTGKIVER--FTPEVAPISEERVIDVAPPS  125

Query  139  ---RRPVEEPLDVGVRAINAMLTLGKGQRVGLFAGSGVGKSVLLGMITRETKADVVVVGL  195
               R  V EPL  GVRAI+++LT G GQR+G+FA++G GK++L+ M+  +T ADV V+GL
Sbjct  126  YASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGL  185

Query  196  IGERGREVQEFILHSLGEEGLRKAVVVVAPANESPLMRLKAAELCHSIAAYFRDQGKDVL  255
            IGERGREV EF+    + +   K V+V A ++ +++ R +AA+L  ++A YFRDQGK V+
Sbjct  186  IGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVV  245

Query  256  LLVDSLTRYAMAQREIALALGEPPATKGYPPSVFGLLPELVEsagngeagsgslsaIYTV  315
            L++DS+TRYA A R++ALA GE PA +GYP+SVF+ LP L+E    G ++ GS++A+YTV
Sbjct  246  LFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE--RPGATSEGSITAFYTV  303

Query  316  LAEGDDQQDPIADCARAILDGHIVLSRRLADVGHYPAIDIAASVSRCMSQVVPVELRRAA  375
            L E++++ DP+AD  R+ILDGH+ LSR+LA+ GHYPAID+  SVSR  +QV        A
Sbjct  304  LLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQA  363

Query  376  LQLKELYGAFEKIRELIPLGGYTPGMDARTDRAVQLAPAIQRFLCQEVGEGADLADSQGR  435
              ++ L   +E ++ +I LG Y PG +   DRA+Q+  +++  LCQ V++ + + D+ + 
Sbjct  364  SAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSG  423

Query  436  LQAL  439
            ++A+
Sbjct  424  MNAF  427

802) fliI in NC_017956


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  213 bits (794),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 152/379 (41%), Positives = 255/379 (68%), Gaps = 14/379 (3%)

Query  59   AEVVGFRDGRALLMPFGPLDGVALGAEVEASGGEATIRPSGGW-----LGRVIDGFGRPI  113
            A+VVG++  R++L  +G  +G++ +  + ++G     R+ ++W     LG V+D  G+ +
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTG-----RALSAWVGYSVLGAVLDPTGKIV  103

Query  114  DGKGPLVpgarprpmrappppaharTRVGAKIDL--GVRVLNTFVTCCRGQRLGIFAASG  171
            +   P V+      +   +PP+ A +RVG +  L  GVR ++ ++TC  GQR+GIFA++G
Sbjct  104  ERFTPEVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAG  162

Query  172  VGKSVLMGMIARYTAADVSVVGLIGERGREVQEFIEGALGPEGLARSVVVVATSDEPALM  231
             GK++LM M+   T ADV V+GLIGERGREV EF++   +++   + V+V ATSD P++ 
Sbjct  163  CGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVD  222

Query  232  RRQAAYTTLAVAEHFRDQGADVLCMIDSITRFAQAQREIGLAAGEPPASKGFTPSVFAEL  291
            R +AA  + +VAE FRDQG  V+  IDS+TR+A+A R+++LA+GE PA +G+ +SVF +L
Sbjct  223  RCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNL  282

Query  292  PRLLERAGPGTGQGSITGLFTVLVEGDNHDEPVADATRGILDGHIVLERSIGERGRYPAV  351
            PRLLER+G +T++GSIT+++TVL+E++++ +P+AD  R+ILDGH+ L R ++ +G+YPA+
Sbjct  283  PRLLERPG-ATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAI  341

Query  352  NVLRSVSRTMPDCNTPEQNAVVIRARRLLSTYEDMAEMIRLGAYRAGSDPAVDEAIRYHE  411
            +VL+SVSR   +  TP +       R+L++  E++   I LG YR+G +   D A++ ++
Sbjct  342  DVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRD  401

Query  412  GLERFLSQGKAERATLAEG  430
            +L   L Q  A+ +++ + 
Sbjct  402  SLKAWLCQPVAQYSSFDDT  420

803) Acav_4289 in NC_015138


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  213 bits (791),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 153/342 (45%), Positives = 242/342 (71%), Gaps = 4/342 (1%)

Query  129  MGDGLLGRVVDSQGLPLDHGGP-VQDVSSEP-MDRRQINAMDRDPVREMLDTGVRAINAL  186
            +G ++LG V+D+ G  +++  P V  +S E  +D    +   R  VRE L TGVRAI++L
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  187  LSVGRGQRLGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKEFVEDILGEQDR  246
            L+ G GQR+G+FA++G GK++L+ M+   T+ADV+V+GLIGERGREV EFV+ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  247  ERavvvaapadappLLRMQGAAYATAIAEHFRDKGKHVLLLMDSLTRYAMAQREIALAIG  306
            E+ V+V A +D P++ R ++A  AT++AE FRD+GK+V+L++DS+TRYA A R++ALA G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  307  EPPATKGYPPSCFAKLPALVERSGNGLHGVGSITAFYTVLSEGDDQQDPIADSARAILDG  366
            E PA +GYP+S F +LP L+ER+G    + GSITAFYTVL E++++ DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGAT--SEGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  367  HIVLSRALAETGHFPAIDIEQSASRVMHNVASREHFDLARRFRAVYSRYQKSRDLIQVGA  426
            H+ LSR LA  GH+PAID+ +S SRV  +V++  H + A   R + +R +  + +I++G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  427  YMSGSDPALDEAIRLQPAMAAFLQQDMFEAAPMQDSLHAMAA  468
            Y +G +   D A++++ ++ A L Q + + ++ +D+L +M A
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

804) fliI in NC_012982


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  213 bits (791),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 160/383 (42%), Positives = 263/383 (69%), Gaps = 8/383 (2%)

Query  67   PRGELVGFEGERAVFLACDDVDGLRPGAAVCFSADDAIVRVSNSWLGRVVDAFGAPVDGG  126
            +R+++VG++ ER+V+   ++ +GL  +  +  ++     +V+ S LG V+D+ G  V+  
Sbjct  47   ARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERF  106

Query  127  LP-LAQGSISRQIKAVPPAAHSRARVSEPMSLGVRALDGFAPCAVGQRMGLFAGSGVGKS  185
             P +A  S  R I   PP+  SR  V EP+  GVRA+DG+  C+VGQRMG+FA++G GK+
Sbjct  107  TPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKT  166

Query  186  TLMSMLARNAQADVVVIGLIgergrevrefveDTLGIEGLARSVVVSATSDETAPRRRRA  245
             LM ML  +++ADV VIGLIGERGREV EFV+   + +   + V+V ATSD  +  R  A
Sbjct  167  MLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNA  226

Query  246  AWMTMAVAEHFRDQGYKVLCLLDSVTRFAMAQREIGLAAGEPPTTKGYTPSVFSELPKLL  305
            A ++ +VAE FRDQG +V+ ++DS+TR+A A R+++LA+GE P+ +GY +SVF +LP+LL
Sbjct  227  AQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLL  286

Query  306  ERAGPGKIVPAGQPQGQITGLFTVLVDGDDHNEPVADAVRGILDGHIVMDRKIAERGRYP  365
            ER       P++ ++G IT+++TVL++++++ +P+AD +R+ILDGH+ + RK+A +G+YP
Sbjct  287  ER-------PGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYP  339

Query  366  AIDVLKSLSRLASHLYTPETAEIARQARRLMSLYSDMEELVRIGAYARGADPEVDRAVQL  425
            AIDVLKS+SR+ +++ TP  AE A   R+LM+   +++ ++ +G Y  G + + DRA+Q+
Sbjct  340  AIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQM  399

Query  426  SPDIEKILTQHVNENSPPEETFA  448
               +   L Q V + S+ ++T++
Sbjct  400  RDSLKAWLCQPVAQYSSFDDTLS  422

805) Pmen_0041 in NC_009439


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  213 bits (791),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 169/420 (41%), Positives = 284/420 (68%), Gaps = 11/420 (2%)

Query  34   VSGILLECQVPAAKVGELCEVSKADGSNML---AEIVGFTPDCTLLSALGTPDGIQVGAT  90
            ++G ++E ++    +GELCE+ ++   + +   A++VG+  + T+LS +G ++G+  +  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  91   IRPLGIAHRIGVDDSLLGSVLDGFGRPLLGQAQGAFAGPHDARQTLPVIADALPPTQRPR  150
            + P G A    V+ S+LG+VLD  G+ ++ +     A   + R     + D  PP+  +R
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGK-IVERFTPEVAPISEER-----VIDVAPPSYASR  129

Query  151  ITT--ALPTGIRSIDSAMLLGEGQRVGLFAGAGCGKTTLMAELARNMACDVIVFGLIGER  208
            +    +L TG+R+ID+ +  G GQR+G+FA+AGCGKT LM  L  +   DV+V+GLIGER
Sbjct  130  VGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGER  189

Query  209  GRELREFLDHELDDTLRKRSVLVCATSDRSSMeraraaftataiaeayrarGLKVLLLID  268
            GRE+ EF+D       + + VLV ATSD +S++R  AA  AT++AE +R +G +V+L+ID
Sbjct  190  GREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFID  249

Query  269  SLTRFARAQREIGIAAGEPLGRGGLPPSVYTLLPQLVERAGMSESGSITALYTVLIEQDS  328
            S+TR+ARA R++++A+GE  +R G P+SV+  LP+L+ER+G +  GSITA+YTVL+E + 
Sbjct  250  SMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEE  309

Query  329  MNDPVADEVRSLLDGHIVMSRKLAEKGHYPAIDVPASISRVLSNVAPREHQrannrlrrl  388
              DP+ADE+RS+LDGH+ +SRKLA +GHYPAIDV  S+SRV+++V+   H    + +R+L
Sbjct  310  EADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKL  369

Query  389  maayrQVEMLLRLGEYQPGTDPVTDCAVQLHEPINAFLRQDLREPSPLPVTLEALMQLTA  448
            M+   ++++++ LGEY+PG +   D A+Q++++++A L Q + + S++  TL ++  ++ 
Sbjct  370  MTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

806) A2cp1_2355 in NC_011891


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 180/416 (44%), Positives = 295/416 (71%), Gaps = 7/416 (1%)

Query  26   RLTGLVLEAAVGGVRQGEAVEIRAPGREPLQ----AEVVGLRDDRAVLVPFGDLGGVGLD  81
            ++TG ++EA + +V  GE  EIR  G++  Q    A+VVGL+ +R+VL  +G+  G++ D
Sbjct  15   KITGPIIEAELRDVAIGELCEIR-RGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD  73

Query  82   AEVVPTGRAHTIRAgpgllgrvldglgrpld--gAPLPAGLEEWAVDrpapnplarrpva  139
              + PTGRA + + G ++LG VLD  G+ ++   + +++  EE+ +D ++P+  +R  V 
Sbjct  74   VVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVR  133

Query  140  aplplGVRVLDGFLTAGEGQRIGLFAGSGVGKSTLLGQLARGARADLCVVCLVGERGREV  199
             PL  GVR +DG+LT G GQR+G+FA++G GK+ L+  L   + AD+ V+ L+GERGREV
Sbjct  134  EPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREV  193

Query  200  REFLEGPLGAEGLARSVVVAATSDAPALVRLKAAHVATAVAEWFAERGDRVLLLVDSVTR  259
             EF++   +++   + V+V ATSD P++ R +AA++AT+VAE F ++G RV+L++DS+TR
Sbjct  194  TEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  260  YARALREVGLAAGEPPARQGYPPSVFAALPRLLERAGNRARGGITAVYTVLVAGGDLEEP  319
            YARALR+V+LA+GE PAR+GYP+SVF  LPRLLER+G  + G+ITA YTVL+ + +  +P
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADP  313

Query  320  IADEVRGILDGHVVLDRAVASGGRFPAVDPLQSLSRVMPavaapahlaaagrvrallaah  379
            +ADE+R+ILDGH+ L R +A+ G++PA+D L+S+SRV   V++P+H   A+ VR L++  
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  380  arvrdlvalGAYRAGADPEADLALARLPAIEAFLRQPLGEAAPFEETLRRLEALAG  435
              ++ ++ LG YR+G + + D A+    ++ A L QP+++ ++F++TL  ++A+A+
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

807) fliI in NC_017644


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 152/377 (41%), Positives = 246/377 (66%), Gaps = 20/377 (5%)

Query  44   GQLCRIESA---NHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGES  100
            G+LC I  +   ++ +  AQ VG++R+ T L  + ++ GL  +  ++P  +A       +
Sbjct  31   GELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALS-----A  85

Query  101  WLGRVVNGLGEPLDGKGRL------NGNDllpplppSVNP---LTRRSVDEPLDVGVKAI  151
            W+G  V  LG  LD  G++      +   +       V P    +R +V EPL  GV+AI
Sbjct  86   WVGYSV--LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAI  143

Query  152  NGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGA  211
            +GLLT G GQR+G+ A++G GK++L+ M+  QT AD+ V+GLIGERGREV EF+D   ++
Sbjct  144  DGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRAS  203

Query  212  DGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIAL  271
            +   K ++V A +D +++ R +A++L  ++A  FRD+G +V+L++DS+TRYA A R++AL
Sbjct  204  HKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVAL  263

Query  272  SLGEPPATKGYPPSAFGMIPKLVESAGNSESSGSMTAIYTVLAEGDDQQDPIVDCARAVL  331
            + GE PA +GYP+S F+ +P+L+E +G + S GS+TA+YTVL E++++ DP+ D  R++L
Sbjct  264  ASGERPARRGYPASVFDNLPRLLERPGAT-SEGSITAFYTVLLESEEEADPMADEIRSIL  322

Query  332  DGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTRLEHQQSARALKQNYAAYMEIKPLIPL  391
            DGH+ L+RKLA  GHYPAID+ +S+SR   QVT   H + A A+++  +   E++ +I L
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  392  GGYVAGADASVDKAVKM  408
            G Y +G +   D+A++M
Sbjct  383  GEYRPGENIDNDRAMQM  399

808) fliI in NC_010334


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  211 bits (786),  Expect = 6e-56, Method: Compositional matrix adjust.
 Identities = 158/394 (41%), Positives = 259/394 (66%), Gaps = 8/394 (2%)

Query  46   SVGSLCAI----ETMAGSLIAEVIGFDDQLLYLMPIEELRGVLPGAKVTPLGEQSGLNVG  101
            ++G LC I    +       A+V+G++ +   L  I + +G+  +  + P G   +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  102  LSLLGRVLDGSGQPIDGLGNLRTDQKASRHVAAINP--LARRAISEPLDVGVRAINAMLT  159
             S+LG VLD +G+ ++ +    +     R +    P   +R ++ EPL  GVRAI+++LT
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT  148

Query  160  VGKGQRMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGPEGRAR  219
             G GQRMG+FA++G GK++L+ M+   T AD++V+GL+GERGREV EF++ + +++ + +
Sbjct  149  CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEK  208

Query  220  SVVVAAPADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGEP  279
             V+V A +D +++ R  A + +T +AEYFRD G  V+L++DS+TRYA+A R++ALA GE 
Sbjct  209  CVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGER  268

Query  280  PATKGYPPSVFAKLPKLVERAGNGGGQQGSITAFYTVLTEGDDLQDPIADASRAILDGHI  339
            PA +GYP+SVF +LP+L+ER+G  +  +GSITAFYTVL E+++  DP+AD  R+ILDGH+
Sbjct  269  PARRGYPASVFDNLPRLLERPGATS--EGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  340  VLSRSLADSGHYPAIDIEASISRVAPMVISPEHLEAMRKVKQVYSLYQQNKDLISIGAYS  399
             LSR LA+ GHYPAID+  S+SRV   V +P H E    V+++ +  ++ + +I +G Y 
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  400  QGSDPRIDNAIRLQPAMNAFLRQTMKDSVTFDSS  433
             G +   D A++++ +++A L Q + +  +FD +
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

809) fliI in NC_008435


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  211 bits (785),  Expect = 8e-56, Method: Compositional matrix adjust.
 Identities = 141/322 (44%), Positives = 224/322 (70%), Gaps = 17/322 (5%)

Query  100  PSWKGRVINALGQPLDGAGVLL--------AGEREMSTDANPPPAMSRARVRAPLQTGVR  151
            ++W G   + LG  LD +G ++        +   E   D  PP+  SR  VR PL TGVR
Sbjct  84   SAWVG--YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVR  141

Query  152  VID-LFSPIC-VGQRIGIFAGSGVGKTTLLSMMAQSAGFDTVVTALVGERGREVREFLEE  209
             ID L++  C VGQR+GIFA++G GKT L+ M+ + +  D  V +L+GERGREV EF++ 
Sbjct  142  AIDGLLT--CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDM  199

Query  210  -ALVHHKSRAVTVVSTSDESPMMRRLAAKTATTIAEYFRDRGESVLLIVDSVTRFAHAAR  268
                H K + V V +TSD +++ R  AA+ ATT+AEYFRD+G  V+L++DS+TR+A+A R
Sbjct  200  LRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALR  259

Query  269  EVALATGEPAIARGYAPSVFSEIPRLLERSGPGIDGQGSITGIFAVLVDGDDHNEPVADT  328
            +VALA+GE +  RGY++SVF ++PRLLER  PG  ++GSIT++++VL++++++ +P+AD 
Sbjct  260  DVALASGERPARRGYPASVFDNLPRLLER--PGATSEGSITAFYTVLLESEEEADPMADE  317

Query  329  VRSTLDGHIVLDREVADQGRYPAVNVLSSVSRLAQHVWSPEERNLVRKLRAMIARFEDTR  388
            +RS LDGH+ L R +A+QG+YPA++VL SVSR+  +V +P + +    +R +++R+E+ +
Sbjct  318  IRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQ  377

Query  389  DLRLMGGYQPGRDSELDQAVQL  410
             +  +G Y+PG + + D+A+Q+
Sbjct  378  LFIDLGEYRPGENIDNDRAMQM  399

810) lfiI in NC_013364


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  211 bits (785),  Expect = 8e-56, Method: Compositional matrix adjust.
 Identities = 151/377 (41%), Positives = 246/377 (66%), Gaps = 20/377 (5%)

Query  44   GQLCRIESA---NHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGES  100
            G+LC I  +   ++ +  AQ VG++R+ T L  + ++ GL  +  ++P  +A       +
Sbjct  31   GELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALS-----A  85

Query  101  WLGRVVNGLGEPLDGKGRL------NGNDllpplppSVNP---LTRRSVDEPLDVGVKAI  151
            W+G  V  LG  LD  G++      +   +       V P    +R +V EPL  GV+AI
Sbjct  86   WVGYSV--LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAI  143

Query  152  NGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGA  211
            +GLLT G GQR+G+ A++G GK++L+ M+  QT AD+ V+GLIGERGREV EF+D   ++
Sbjct  144  DGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRAS  203

Query  212  DGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDFLTRYAMAQREIAL  271
            +   K ++V A +D +++ R +A++L  ++A  FRD+G +V+L++D +TRYA A R++AL
Sbjct  204  HKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVAL  263

Query  272  SLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPIVDCARAVL  331
            + GE PA +GYP+S F+ +P+L+E +G + S GS+TA+YTVL E++++ DP+ D  R++L
Sbjct  264  ASGERPARRGYPASVFDNLPRLLERPGAT-SEGSITAFYTVLLESEEEADPMADEIRSIL  322

Query  332  DGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYMEIKPLIPL  391
            DGH+ L+RKLA  GHYPAID+ +S+SR   QVT+  H + A A+++  +   E++ +I L
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  392  GGYVAGADASVDKAVKM  408
            G Y +G +   D+A++M
Sbjct  383  GEYRPGENIDNDRAMQM  399

811) GU3_14055 in NC_016745


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  210 bits (780),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 156/389 (41%), Positives = 252/389 (65%), Gaps = 13/389 (3%)

Query  61   AEVVALDREQALLLPLTSASGL------YTGAR-VRPLAGEDRLAVSAALLGRIVDGLLR  113
            A+VV+L+RE+++L  + +A GL      Y  +R + +  G   L+      G+IV+ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  114  PLDGRPPAQGQPVPWQCAAPNPLLRRRVSEPLDVGVRAINGLLTPGKGQRLGLFAGPGVG  173
             +   P ++ + +  + A+P+   R  V EPL  GVRAI+GLLT G GQR+G+FA++G G
Sbjct  109  EVA--PISEERVI--DVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCG  164

Query  174  KSVLLGMMARYTRADVVVVGLIGERGREVREFIDDCLGAQGRARSVVIAAPADQSPLMRV  233
            K++L+ M+   T ADV V+GLIGERGREV EF+D   +++ + + V++ A +D +++ R 
Sbjct  165  KTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRC  224

Query  234  RAAESCHRVAEHFRDQGQDVLLLMDSLTRYVQARREIGLAVGEPPVARGYPPSAFSALTG  293
             AA+    VAE FRDQG+ V+L++DS+TRY +A R+++LA GE P  RGYP+S F  L  
Sbjct  225  NAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPR  284

Query  294  LVERAGNGEQPAGSLTAFYTVLAEGDDQQDPVADAARAILDGHVVLSRQLAEQGHYPAID  353
            L+ER+G   +  GS+TAFYTVL E++++ DP+AD  R+ILDGH+ LSR+LA QGHYPAID
Sbjct  285  LLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAID  342

Query  354  IGASISRVMSKVAGPDHLARAVQCKRWFGLYQQVRELLPLGGIQSGKSQETDEAIARYPA  413
            +  S+SRV ++V+ P H  +A   ++     ++++ ++ LG  ++G + + D A+    +
Sbjct  343  VLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDS  402

Query  414  LAAFLQQGELEPVSLAETLQQLAELTGDT  442
            L A L Q   +  S+ +TL  +  ++++ 
Sbjct  403  LKAWLCQPVAQYSSFDDTLSGMNAFADQN  431

812) fliI in NC_009901


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  209 bits (778),  Expect = 3e-55, Method: Compositional matrix adjust.
 Identities = 160/395 (41%), Positives = 262/395 (67%), Gaps = 10/395 (2%)

Query  46   AIGSLCAI----ETMAGDLIAEVIGFDDQLLYLMPIEELRGVLPGAKVTPLGEQSGLNVG  101
            AIG LC I    +       A+V+G++ +   L  I + +G+  +  + P G   +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  102  LSLLGRVLDGSGLPIDGLG---NLKTDQKASSHAPAINPLARRAISEPLDVGVRAINSML  158
             S+LG VLD +G  ++ +       ++++    AP+  + +R ++ EPL  GVRAI+++L
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLL  147

Query  159  TVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergrevKEFIEEILGPEGRA  218
            T G GQRMG+FA++G GK++L+ M+   T AD++V+GL+GERGREV EF++ + +++ + 
Sbjct  148  TCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKE  207

Query  219  RSVVVAAPADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRYAQAQREIALAVGE  278
            + V+V A +D +++ R  A + +T +AEYFRD G  V+L++DS+TRYA+A R++ALA GE
Sbjct  208  KCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGE  267

Query  279  PPATKGYPPSVFAKLPKLVERAGNGGGKQGSITAFYTVLTEGDDLQDPIADASRAILDGH  338
             PA +GYP+SVF +LP+L+ER+G  +  +GSITAFYTVL E+++  DP+AD  R+ILDGH
Sbjct  268  RPARRGYPASVFDNLPRLLERPGATS--EGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  339  IVLSRSLADSGHYPAIDIEASISRVAPMVISPEHLEAMRKVKQVYSLYQQNKDLISIGAY  398
            + LSR LA+ GHYPAID+  S+SRV   V +P H E    V+++ +  ++ + +I +G Y
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  399  SQGSDPRIDNAIRLQPAMNAFLRQTMKDSVTFDSS  433
              G +   D A++++ +++A L Q + +  +FD +
Sbjct  386  RPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

813) fliI in NC_013892


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  209 bits (776),  Expect = 4e-55, Method: Compositional matrix adjust.
 Identities = 148/346 (43%), Positives = 234/346 (68%), Gaps = 8/346 (2%)

Query  104  AGGRRLP--LGTELLGRVLDGSGRPLDGFP---APDTGYRALLTTPPINPLQRTPISDVL  158
            + GR L+  +G  +LG VLD +G+ ++ F    AP +  R +  +PP  +  R  + + L
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVREPL  136

Query  159  DVGVRAINSLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDF  218
              GVRAI++LLT G GQRMG+FA++G GK++L+ M+   T+ADV+V+GLIGERGREV +F
Sbjct  137  ITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEF  196

Query  219  IENILGVEGLarsvvvaapadvspLLRMQGASYATRIAEDFRDRGKHVLLIMDSLTRYSM  278
            ++ + + +   + V+V A +D +++ R ++A  AT +AE FRD+GK+V+L++DS+TRY+ 
Sbjct  197  VDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYAR  256

Query  279  AQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGVSDGGSITAFYTVLTEGDDQQDPI  338
            A R++ALA GE PA +GYP+SVF +LP L+ER+G   +  GSITAFYTVL E++++ DP+
Sbjct  257  ALRDVALASGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPM  314

Query  339  ADSARAILDGHIVLSRSLAESGHYPAIDIEASISRAMTSLIDNDHYRRVQQFKQLLASYQ  398
            AD  R+ILDGH+ LSR LA  GHYPAID+  S+SR    +    H  +    ++L++  +
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  399  RNRDLINVGAYAAGSDPLLDRAIQLYPHMAQFLQQGMSERSEYDAA  444
              + +I++G Y +G +   DRA+Q+   +   L Q +++ S +D +
Sbjct  375  ELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

814) fliI in NC_014640


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  208 bits (774),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 154/357 (44%), Positives = 238/357 (67%), Gaps = 18/357 (5%)

Query  134  GRHLP--VGNALLGRVLDGAGRPLDGLGPLTGAELAPLSAQPINPL------SRAPIDTV  185
            GR L+  VG ++LG VLD +G+ ++ + P    E+AP+S + +  +      SR  +   
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTP----EVAPISEERVIDVAPPSYASRVGVREP  135

Query  186  LDTGVRAINGLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTKADVIVVGLIGERGREVKE  245
            L TGVRAI+GLLT G GQRMG+FA++G GK++L+ M+   T ADV+V+GLIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  246  FIEHNLGPEGLarsvvvaapadvsaLLRLQGAAYATRLAEHFRDQGLDVLLIMDSLTRYA  305
            F++   +++   + V+V A +D +++ R ++A  AT +AE FRDQG  V+L++DS+TRYA
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  306  MAQREIALAIGEPPATKGYPPSVFAKLPMLVERAGMGAPGASGKAGSITAFYTVLAEGDD  365
             A R++ALA GE PA +GYP+SVF +LP L+ER+G      +   GSITAFYTVL E+++
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPG------ATSEGSITAFYTVLLESEE  309

Query  366  QQDPIADSARAILDGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITPEQFAVVRRFKQS  425
            + DP+AD  R+ILDGH+ LSR LA  GHYPAID+  S+SR    + TP +       ++ 
Sbjct  310  EADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKL  369

Query  426  LSRFQRNRDLIAVGAYAAGNDPQLDEAIARYPRLEAFLQQDIGENVGYEAAVSQLRA  482
            ++R++  + +I +G Y +G++ + D A+     L A L Q +++  +++ ++S + A
Sbjct  370  MTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

815) hrcN in NC_013971


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  208 bits (773),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 179/410 (44%), Positives = 283/410 (70%), Gaps = 9/410 (2%)

Query  36   ISGILIECILPGARIGDLCRIQRS-DGGSVLS--EIVGFSPEKILLSALGALDGISQGAT  92
            I+G +IE  L +  IG+LC I+R+ +   V++  ++VG+  E+ +LS +G  +G+S++  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  93   IVPLYLPHSICVSEQLLGSVLDGFGRALEPGGHSAFAEPGTQVRAVPVLN-DApppterp  151
            + P   + S  V+  +LG+VLD  G+ +E      F+   + +    V++  +P+ + R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-----FTPEVAPISEERVIDVAPPSYASRV  130

Query  152  rittplptGLRAIDGLLTIGNGQRVGIFAGAGCGKTTLLAELARNTPCDAIVFGLIGERG  211
             +  PL TG+RAIDGLLT G GQR+GIFA+AGCGKT L+  L  +T  D +V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  212  RELREFLDHELDDELRSRTVLLCATSDRSSMeraraaftataiaeafraeGKSVLLIVDS  271
            RE+ EF+D     + + + VL+ ATSD +S++R  AA  AT++AE FR +GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  272  LTRFARAQREIglalgeppgrgglppSVYTLLPRLVERAGQTQQGAITALYSVLIEQDSM  331
            +TR+ARA R+++LA GE P+R G P+SV+  LPRL+ER+G T +G+ITA+Y+VL+E +  
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  332  NDPVADEVRSLIDGHIVLSRRLAERNHYPAIDVLASLSRTMSNVVEPGHMMQAGRLRSLM  391
             DP+ADE+RS++DGH+ LSR+LA + HYPAIDVL S+SR  ++V  P H  QA+ +R LM
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  392  AAYQQVEMLIRLGEYQPGNDSLTDAAVNANDIINRFLRQSMRAPDPFEQT  441
            +  ++++++I LGEY+PG++   D A++  D ++  L Q++    +F++T
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

816) hrcN in NC_013961


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  208 bits (772),  Expect = 8e-55, Method: Compositional matrix adjust.
 Identities = 179/410 (44%), Positives = 283/410 (70%), Gaps = 9/410 (2%)

Query  34   ISGILIECILPGARIGDLCRIQRS-DGGSVLS--EIVGFSPEKILLSALGALDGISQGAT  90
            I+G +IE  L +  IG+LC I+R+ +   V++  ++VG+  E+ +LS +G  +G+S++  
Sbjct  16   ITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVV  75

Query  91   IVPLYLPHSICVSEQLLGSVLDGFGRALEPGGHSAFAEPGTQVRAVPVLN-DApppterp  149
            + P   + S  V+  +LG+VLD  G+ +E      F+   + +    V++  +P+ + R 
Sbjct  76   LYPTGRALSAWVGYSVLGAVLDPTGKIVER-----FTPEVAPISEERVIDVAPPSYASRV  130

Query  150  rittplptGLRAIDGLLTIGNGQRVGIFAGAGCGKTTLLAELARNTPCDAIVFGLIGERG  209
             +  PL TG+RAIDGLLT G GQR+GIFA+AGCGKT L+  L  +T  D +V+GLIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  210  RELREFLDHELDDELRSRTVLLCATSDRSSMeraraaftataiaeafraeGKSVLLIVDS  269
            RE+ EF+D     + + + VL+ ATSD +S++R  AA  AT++AE FR +GK V+L++DS
Sbjct  191  REVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDS  250

Query  270  LTRFARAQREIglalgeppgrgglppSVYTLLPRLVERAGQTQQGAITALYSVLIEQDSM  329
            +TR+ARA R+++LA GE P+R G P+SV+  LPRL+ER+G T +G+ITA+Y+VL+E +  
Sbjct  251  MTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEE  310

Query  330  NDPVADEVRSLIDGHIVLSRRLAERNHYPAIDVLASLSRTMSNVVEPGHMMQAGRLRSLM  389
             DP+ADE+RS++DGH+ LSR+LA + HYPAIDVL S+SR  ++V  P H  QA+ +R LM
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  390  AAYQQVEMLIRLGEYQPGNDSLTDAAVNANDIINRFLRQSMRAPDPFEQT  439
            +  ++++++I LGEY+PG++   D A++  D ++  L Q++    +F++T
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

817) MDS_4744 in NC_015410


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  208 bits (772),  Expect = 8e-55, Method: Compositional matrix adjust.
 Identities = 160/388 (42%), Positives = 257/388 (67%), Gaps = 18/388 (4%)

Query  58   AQVVGFNRDITYLMPFKKPVGLAAGSRVFPAKDEALLQIDESWLGRVVNGLGEPLDERGK  117
            AQVVG++R+ T L  + ++ GL+ +  ++P+ + AL     +W+G  V  LG  LD  GK
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPT-GRAL----SAWVGYSV--LGAVLDPTGK  101

Query  118  LSGR-----DPLP----VELPSVNPLKRRPVEAALDVGVRAINGLLTLGKGQRVGLFAGS  168
            +  R      P++    +++++ +   R  V  +L  GVRAI+GLLT G GQR+G+FA++
Sbjct  102  IVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASA  161

Query  169  GVGKSVLLGMITRQTKADVVVVGLIGERGREVQEFILHSLGEEGLRKAVVVVAPANESPL  228
            G GK++L+ M+  QT ADV V+GLIGERGREV EF+    + +   K V+V A ++ +++
Sbjct  162  GCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSV  221

Query  229  MRLKATELCHSIAAYFRDQGQDVLLLVDSLTRYAMAQREIALALGEPPATKGYPPSVFGM  288
             R +A++L  ++A YFRDQG+ V+L++DS+TRYA A R++ALA GE PA +GYP+SVF+ 
Sbjct  222  DRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDN  281

Query  289  LPELVesagngesgsgslsaIYTVLAEGDDHQDPIVDCARAILDGHIVLSRRLADVGHYP  348
            LP L+     G ++ GS++A+YTVL E++++ DP+ D  R+ILDGH+ LSR+LA+ GHYP
Sbjct  282  LPRLL--ERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYP  339

Query  349  AIDISASVSRCMSQVGEPAHLAAGRQFKEFYSTYEKIKELIPLGGYTPGMDAKTDRAVQL  408
            AID+  SVSR  +QV  P+H   +   + + +  E ++ +I LG Y PG +   DRA+Q+
Sbjct  340  AIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQM  399

Query  409  APSLERFLRQEVGASAELGASIATLQSI  436
              SL   L Q V+  + ++ +++ ++++
Sbjct  400  RDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

818) NH44784_042951 in NC_021285


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  207 bits (769),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 153/357 (43%), Positives = 236/357 (67%), Gaps = 18/357 (5%)

Query  134  GRHLP--VGNALLGRVLDGAGRPLDGLGPLTGAELAPLSAQPINPL------SRAPIDTV  185
            GR L+  VG ++LG VLD +G+ ++ + P    E+AP+S + +  +      SR  +   
Sbjct  80   GRALSAWVGYSVLGAVLDPTGKIVERFTP----EVAPISEERVIDVAPPSYASRVGVREP  135

Query  186  LDTGVRAINGLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTKADIIVVGLIGERGREVKE  245
            L TGVRAI+GLLT G GQRMG+FA++G GK++L+ M+   T AD++V+GLIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  246  FIEHNLGPEGLarsvvvaapadvsaLLRLQGAAYATRLAEHFRDQGLDVLLIMDSLTRYA  305
            F++   +++   + V+V A +D +++ R ++A  AT +AE FRDQG  V+L++DS+TRYA
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  306  MAQREIALAIGEPPATKGYPPSVFAKLPTLVERAGMGAPGPNGKAGSITAFYTVLAEGDD  365
             A R++ALA GE PA +GYP+SVF +LP L+ER+G          GSITAFYTVL E+++
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPG------ATSEGSITAFYTVLLESEE  309

Query  366  QQDPIADSARAILDGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITPQQFSVVRRFKQT  425
            + DP+AD  R+ILDGH+ LSR LA  GHYPAID+  S+SR    + TP +       ++ 
Sbjct  310  EADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKL  369

Query  426  LSRYQRNRDLIAVGAYAAGNDPQLDDAIARYPRLEAFLQQDIGENVGYEDAVEQLRA  482
            ++R +  + +I +G Y +G++ + D A+     L A L Q +++  +++D++  + A
Sbjct  370  MTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

819) fliI in NC_014810


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  207 bits (768),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 144/335 (43%), Positives = 232/335 (70%), Gaps = 7/335 (2%)

Query  83   VLFVKE-GLSFPVGEGLLGRVLDPLGNPLDELGFVRASAFAPVMVEPMKP--LDRGVIDE  139
            VL+    +LS  VG ++LG VLDP G+ ++ +    A+     +++   P    R  + E
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  140  PFGVGVKSIDALLTCGKGQKLGIFAGSGVGKSTLMGMVVRGCSAPIKVIALIGERGREIP  199
            P+  GV++ID+LLTCG GQ++GIFA++G GK+ LM M++    A + VI+LIGERGRE+ 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  200  EFIHKNLQGNL--DNTVLVVATSDDSPLMRKYGAFCAMSVAEYFKNQGHDVLFMMDSITR  257
            EF++  L+++   ++ VLV ATSD +++ R  +A  A +VAEYF++QG  V++ +DS+TR
Sbjct  195  EFVDM-LRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTR  253

Query  258  FAMAQREIGLAMGEPPTSKGYPPSALTLLPQLMERAGKEKNKGSITAFFTVLVEGDDLSD  317
            +A A R+++LA GE P+ +GYP+S +  LP+L+ER+G   + GSITAF+TVL+E+++ +D
Sbjct  254  YARALRDVALASGERPARRGYPASVFDNLPRLLERPG-ATSEGSITAFYTVLLESEEEAD  312

Query  318  PIADQARSILDGHIVLSRELTDHGIYPPINILNSASRVSKEVSATEHMLAARKFRKLHAL  377
            P+AD+ RSILDGH+ LSR L+++G YP+I++L+S SRV  +V++  H   A   RKL + 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  378  LKENEVLIRIGSYQPGFDADLDEAIAKKAGMEAFM  412
            L E +++I +G Y+PG + D D A+  + ++ A +
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWL  407

820) Deba_0915 in NC_014365


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  206 bits (766),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 152/369 (42%), Positives = 257/369 (70%), Gaps = 9/369 (2%)

Query  57   GEVVGFKGQGVQIMPYADTRGLRPGCLVSSAGGAGLVKVGQALLGRVLDGLGNPVD----  112
            ++VVG++ +   +   ++++GL  + ++ ++G A    VG ++LG VLD  G+ V+    
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  113  -GGPMPEWDQLYPLYRQAPSAMGRPRISQPVDVGVKVINALLTLGKGQRIGIFAGSGVGK  171
              +P++E +++  +   +PS  +R  + +P+  GV+ I++LLT G GQR+GIFA++G GK
Sbjct  109  EVAPISE-ERVIDV--APPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGK  165

Query  172  STLMSMIARHTQADISVIGLVGERGRELREFIERDLGPEGLARSVVIVATSDQPALVRMR  231
            + LM M+  +T+AD+ VIGL+GERGRE+ EF++   +++   + V++ ATSD P++ R  
Sbjct  166  TMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCN  225

Query  232  AAYLATAVAEYFRDQSRDVILMMDSVTRFAMAGREVGLSIGEPPTTKGYTPSVFAQLPRL  291
            AA LAT+VAEYFRDQ++ V+L +DS+TR+A A R+V+L+ GE P+ +GY +SVF +LPRL
Sbjct  226  AAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRL  285

Query  292  LERAgtsegggsitgiYTVLVEGDDVTEPVADAMRSILDGHFVLTRALADRGHYPAIELL  351
            LER+  + + GSIT++YTVL+E+++ ++P+AD +RSILDGH+ L+R LA++GHYPAI++L
Sbjct  286  LERP-GATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVL  344

Query  352  GSISRLARDINPPEVttaarrltellaayrrNEDLINIGAYADGSNPVIDRAIRMMERIN  411
             S+SR+  ++  P  +  A  +  L++     + +I++G Y  G N   DRA++M + ++
Sbjct  345  KSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLK  404

Query  412  KFLTQPVEK  420
              L QPV +
Sbjct  405  AWLCQPVAQ  413

821) fliI in NC_021710


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  206 bits (765),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 164/383 (43%), Positives = 252/383 (66%), Gaps = 6/383 (1%)

Query  59   AEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLDGLG-  117
            A+VVG+  + T L      +G+  +  + P  R  +  VG ++LG V+D  G+ ++ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  118  EID--AEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKSV  175
            E+   +E R     PP  +  R  +  P+  GVRAI++L T GVGQRMG+FA++G GK++
Sbjct  109  EVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  176  LLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKGC  235
            L+ M+    EADV V+GL+GERGREV EF++ + + + +++ V+V A +D +++ R ++ 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  236  ETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALVE  295
            + A T+AEYFRD+G +V+L+IDS+TRYA A R++ALA GE PA +GYP+SVF  LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  296  RAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIEA  355
            R+G  SE  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  356  SISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAINA  415
            S+SRV   V +  H   A  +R++ +   + Q +I +G Y  G +   D A++   +++A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  416  LLQQGMKQVIPYDESLEGMAALA  438
             L Q + Q  ++D++L GM A+A
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAFA  428

822) fliI in NC_021717


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  206 bits (765),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 164/383 (43%), Positives = 252/383 (66%), Gaps = 6/383 (1%)

Query  59   AEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLDGLG-  117
            A+VVG+  + T L      +G+  +  + P  R  +  VG ++LG V+D  G+ ++ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  118  EID--AEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKSV  175
            E+   +E R     PP  +  R  +  P+  GVRAI++L T GVGQRMG+FA++G GK++
Sbjct  109  EVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  176  LLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKGC  235
            L+ M+    EADV V+GL+GERGREV EF++ + + + +++ V+V A +D +++ R ++ 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  236  ETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALVE  295
            + A T+AEYFRD+G +V+L+IDS+TRYA A R++ALA GE PA +GYP+SVF  LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  296  RAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIEA  355
            R+G  SE  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  356  SISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAINA  415
            S+SRV   V +  H   A  +R++ +   + Q +I +G Y  G +   D A++   +++A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  416  LLQQGMKQVIPYDESLEGMAALA  438
             L Q + Q  ++D++L GM A+A
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAFA  428

823) fliI in NC_021712


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  206 bits (765),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 164/383 (43%), Positives = 252/383 (66%), Gaps = 6/383 (1%)

Query  59   AEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLDGLG-  117
            A+VVG+  + T L      +G+  +  + P  R  +  VG ++LG V+D  G+ ++ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  118  EID--AEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKSV  175
            E+   +E R     PP  +  R  +  P+  GVRAI++L T GVGQRMG+FA++G GK++
Sbjct  109  EVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  176  LLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKGC  235
            L+ M+    EADV V+GL+GERGREV EF++ + + + +++ V+V A +D +++ R ++ 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  236  ETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALVE  295
            + A T+AEYFRD+G +V+L+IDS+TRYA A R++ALA GE PA +GYP+SVF  LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  296  RAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIEA  355
            R+G  SE  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  356  SISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAINA  415
            S+SRV   V +  H   A  +R++ +   + Q +I +G Y  G +   D A++   +++A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  416  LLQQGMKQVIPYDESLEGMAALA  438
             L Q + Q  ++D++L GM A+A
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAFA  428

824) fliI in NC_016613


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  206 bits (765),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 159/394 (41%), Positives = 257/394 (66%), Gaps = 12/394 (3%)

Query  42   PIGSLCLVETMSGHME----AEVVGFSGDNLFLMPSEQITGILPGAKVTPLTTDAGLPVG  97
            +IG LC +     + +    A+VVG+  +   L    +  G+  +  + P     +  VG
Sbjct  29   AIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVG  88

Query  98   MELLGRVIDGVGNPLD----GLGPIYTDHRASFNAEPINPLARKPISEPLDVGLKAINGL  153
              +LG V+D  G+ ++     ++PI +++R  ++  P +  +R  + EPL  G++AI+GL
Sbjct  89   YSVLGAVLDPTGKIVERFTPEVAPI-SEERV-IDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  154  LTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVKefieeilgeegr  213
            LT G GQR+G+FA++G GK++ + M+   T A+V V+GLIGERGREV EF++ + + + +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  214  rrsvvvaapadaspLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRFAQAQREIALSVG  273
             + V+V A +D +++ R ++ Q A T+AEYFRDQG  V+L++DS+TR+A+A R++AL+ G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  274  EPPATKGYPPSVFAKLPALVERAGNGGADQGSITAFFTVLTEGDDLQDPIADASRAILDG  333
            E PA +GYP+SVF +LP L+ER+G  ++ +GSITAF+TVL E+++  DP+AD  R+ILDG
Sbjct  267  ERPARRGYPASVFDNLPRLLERPG--ATSEGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  334  HIVLSREMADAGHYPAIDVEKSVSRVMPQITTEEHVLMSKAVRQVLSICRKNQDLVSIGA  393
            H+ LSR +A+ GHYPAIDV KSVSRV  Q+TT  H   + AVR++++     Q ++ +G 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  394  YKPGTDPAIDSAFTLKPKLDEYLQQRMKESVPYD  427
            Y+PG +   D A  ++  L   L Q + +  ++D
Sbjct  385  YRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD  418

825) fliI in NC_019393


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  205 bits (764),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 164/383 (43%), Positives = 252/383 (66%), Gaps = 6/383 (1%)

Query  59   AEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLDGLG-  117
            A+VVG+  + T L      +G+  +  + P  R  +  VG ++LG V+D  G+ ++ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  118  EID--AEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKSV  175
            E+   +E R     PP  +  R  +  P+  GVRAI++L T GVGQRMG+FA++G GK++
Sbjct  109  EVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  176  LLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKGC  235
            L+ M+    EADV V+GL+GERGREV EF++ + + + +++ V+V A +D +++ R ++ 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  236  ETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALVE  295
            + A T+AEYFRD+G +V+L+IDS+TRYA A R++ALA GE PA +GYP+SVF  LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  296  RAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIEA  355
            R+G  SE  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  356  SISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAINA  415
            S+SRV   V +  H   A  +R++ +   + Q +I +G Y  G +   D A++   +++A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  416  LLQQGMKQVIPYDESLEGMAALA  438
             L Q + Q  ++D++L GM A+A
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAFA  428

826) fliI in NC_018632


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  205 bits (764),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 164/383 (43%), Positives = 252/383 (66%), Gaps = 6/383 (1%)

Query  59   AEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLDGLG-  117
            A+VVG+  + T L      +G+  +  + P  R  +  VG ++LG V+D  G+ ++ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  118  EIN--AEARAPTTRPPMNPLIRRPINTPMDVGVRAINALNTVGVGQRMGLFAGSGVGKSV  175
            E+   +E R     PP  +  R  +  P+  GVRAI++L T GVGQRMG+FA++G GK++
Sbjct  109  EVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  176  LLGMMTRGCEADvvvvglvgergrevKEFIHEILTEEERQRAVVVAAPADTSPLMRLKGC  235
            L+ M+    EADV V+GL+GERGREV EF++ + + + +++ V+V A +D +++ R ++ 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  236  ETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALVE  295
            + A T+AEYFRD+G +V+L+IDS+TRYA A R++ALA GE PA +GYP+SVF  LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  296  RAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIEA  355
            R+G  SE  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  356  SISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAINA  415
            S+SRV   V +  H   A  +R++ +   + Q +I +G Y  G +   D A++   +++A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  416  LLQQGMKQVIPYDESLEGMAALA  438
             L Q + Q  ++D++L GM A+A
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAFA  428

827) fliI in NC_018679


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  205 bits (764),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 164/383 (43%), Positives = 252/383 (66%), Gaps = 6/383 (1%)

Query  59   AEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLDGLG-  117
            A+VVG+  + T L      +G+  +  + P  R  +  VG ++LG V+D  G+ ++ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  118  EIN--AEARAPTTRPPMNPLIRRPINTPMDVGVRAINALNTVGVGQRMGLFAGSGVGKSV  175
            E+   +E R     PP  +  R  +  P+  GVRAI++L T GVGQRMG+FA++G GK++
Sbjct  109  EVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  176  LLGMMTRGCEADvvvvglvgergrevKEFIHEILTEEERQRAVVVAAPADTSPLMRLKGC  235
            L+ M+    EADV V+GL+GERGREV EF++ + + + +++ V+V A +D +++ R ++ 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  236  ETAITIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALVE  295
            + A T+AEYFRD+G +V+L+IDS+TRYA A R++ALA GE PA +GYP+SVF  LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  296  RAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIEA  355
            R+G  SE  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  356  SISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAINA  415
            S+SRV   V +  H   A  +R++ +   + Q +I +G Y  G +   D A++   +++A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  416  LLQQGMKQVIPYDESLEGMAALA  438
             L Q + Q  ++D++L GM A+A
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAFA  428

828) fliI in NC_011138


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  205 bits (764),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 164/383 (43%), Positives = 252/383 (66%), Gaps = 6/383 (1%)

Query  59   AEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLDGLG-  117
            A+VVG+  + T L      +G+  +  + P  R  +  VG ++LG V+D  G+ ++ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  118  EID--AEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKSV  175
            E+   +E R     PP  +  R  +  P+  GVRAI++L T GVGQRMG+FA++G GK++
Sbjct  109  EVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  176  LLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKGC  235
            L+ M+    EADV V+GL+GERGREV EF++ + + + +++ V+V A +D +++ R ++ 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  236  ETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALVE  295
            + A T+AEYFRD+G +V+L+IDS+TRYA A R++ALA GE PA +GYP+SVF  LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  296  RAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIEA  355
            R+G  SE  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  356  SISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAINA  415
            S+SRV   V +  H   A  +R++ +   + Q +I +G Y  G +   D A++   +++A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  416  LLQQGMKQVIPYDESLEGMAALA  438
             L Q + Q  ++D++L GM A+A
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAFA  428

829) fliI in NC_021714


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  205 bits (764),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 164/383 (43%), Positives = 252/383 (66%), Gaps = 6/383 (1%)

Query  59   AEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLDGLG-  117
            A+VVG+  + T L      +G+  +  + P  R  +  VG ++LG V+D  G+ ++ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  118  EID--AEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKSV  175
            E+   +E R     PP  +  R  +  P+  GVRAI++L T GVGQRMG+FA++G GK++
Sbjct  109  EVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  176  LLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKGC  235
            L+ M+    EADV V+GL+GERGREV EF++ + + + +++ V+V A +D +++ R ++ 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  236  ETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALVE  295
            + A T+AEYFRD+G +V+L+IDS+TRYA A R++ALA GE PA +GYP+SVF  LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  296  RAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIEA  355
            R+G  SE  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  356  SISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAINA  415
            S+SRV   V +  H   A  +R++ +   + Q +I +G Y  G +   D A++   +++A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  416  LLQQGMKQVIPYDESLEGMAALA  438
             L Q + Q  ++D++L GM A+A
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAFA  428

830) fliI in NC_021713


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  205 bits (764),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 164/383 (43%), Positives = 252/383 (66%), Gaps = 6/383 (1%)

Query  59   AEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLDGLG-  117
            A+VVG+  + T L      +G+  +  + P  R  +  VG ++LG V+D  G+ ++ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  118  EID--AEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKSV  175
            E+   +E R     PP  +  R  +  P+  GVRAI++L T GVGQRMG+FA++G GK++
Sbjct  109  EVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  176  LLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKGC  235
            L+ M+    EADV V+GL+GERGREV EF++ + + + +++ V+V A +D +++ R ++ 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  236  ETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALVE  295
            + A T+AEYFRD+G +V+L+IDS+TRYA A R++ALA GE PA +GYP+SVF  LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  296  RAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIEA  355
            R+G  SE  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  356  SISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAINA  415
            S+SRV   V +  H   A  +R++ +   + Q +I +G Y  G +   D A++   +++A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  416  LLQQGMKQVIPYDESLEGMAALA  438
             L Q + Q  ++D++L GM A+A
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAFA  428

831) fliI in NC_022270


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  205 bits (763),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 151/337 (45%), Positives = 233/337 (70%), Gaps = 6/337 (1%)

Query  109  LGRVVNGLG---EPFDDGAPLKGGDRVSLEPKPINPLKRRPVDTPLDVGVRAINGLLTVG  165
            LG V++  G   E F    +  + +RV ++  P +   R  V  PL  GVRAI+GLLT G
Sbjct  92   LGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVREPLITGVRAIDGLLTCG  150

Query  166  KGQRIGLMAGSGVGKSVLMGMITQNTEADVIVVGLIgergrevrefverNLTPEARKKAI  225
             GQR+G+ A++G GK++LM M+ ++TEADV+V+GLIGERGREV EFV+   +++ + K +
Sbjct  151  VGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCV  210

Query  226  IVAAPADESPLMRLRATLLCHRVAEYFRDQGKDVLLLMDSLTRYAMAQREIALSLGEPPA  285
            +V A +D +++ R  A+ L   VAEYFRDQGK V+L++DS+TRYA A R++AL+ GE PA
Sbjct  211  LVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPA  270

Query  286  SRGYPPSVFSVLPQLLERAGNSENPNGSLTAIYTVLAEGDDQQDPVVDSARAILDGHVVL  345
             RGYP+SVF  LP+LLER+G +  ++GS+TA+YTVL E++++ DP+ D  R+ILDGH+ L
Sbjct  271  RRGYPASVFDNLPRLLERPGAT--SEGSITAFYTVLLESEEEADPMADEIRSILDGHLYL  328

Query  346  SRQLAEQGHYPAIDINASISRCMNACTHEAHSTIANNFRQLYSNYLQVKELLPLGGYQPG  405
            SR+LA QGHYPAID+  S+SR     T  +H+  A+  R+L +   +++ ++ LG Y+PG
Sbjct  329  SRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPG  388

Query  406  QDPELDQSVSMYPHLRAYLQQSANEAVDYPTSLTALA  442
            ++ + D+++ M   L+A L Q+  +   +  +L+++ 
Sbjct  389  ENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

832) VIBHAR_04976 in NC_009784


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  205 bits (763),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 151/337 (45%), Positives = 233/337 (70%), Gaps = 6/337 (1%)

Query  109  LGRVVNGLG---EPFDDGAPLKGGDRVSLEPKPINPLKRRPVDTPLDVGVRAINGLLTVG  165
            LG V++  G   E F    +  + +RV ++  P +   R  V  PL  GVRAI+GLLT G
Sbjct  92   LGAVLDPTGKIVERFTPEVAPISEERV-IDVAPPSYASRVGVREPLITGVRAIDGLLTCG  150

Query  166  KGQRIGLMAGSGVGKSVLMGMITQNTEADVIVVGLIgergrevrefverNLTPEARKKAI  225
             GQR+G+ A++G GK++LM M+ ++TEADV+V+GLIGERGREV EFV+   +++ + K +
Sbjct  151  VGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCV  210

Query  226  IVAAPADESPLMRLRATLLCHRVAEYFRDQGKDVLLLMDSLTRYAMAQREIALSLGEPPA  285
            +V A +D +++ R  A+ L   VAEYFRDQGK V+L++DS+TRYA A R++AL+ GE PA
Sbjct  211  LVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPA  270

Query  286  SRGYPPSVFSVLPQLLERAGNSENPNGSLTAIYTVLAEGDDQQDPVVDSARAILDGHVVL  345
             RGYP+SVF  LP+LLER+G +  ++GS+TA+YTVL E++++ DP+ D  R+ILDGH+ L
Sbjct  271  RRGYPASVFDNLPRLLERPGAT--SEGSITAFYTVLLESEEEADPMADEIRSILDGHLYL  328

Query  346  SRQLAEQGHYPAIDINASISRCMNACTHEAHSTIANNFRQLYSNYLQVKELLPLGGYQPG  405
            SR+LA QGHYPAID+  S+SR     T  +H+  A+  R+L +   +++ ++ LG Y+PG
Sbjct  329  SRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPG  388

Query  406  QDPELDQSVSMYPHLRAYLQQSANEAVDYPTSLTALA  442
            ++ + D+++ M   L+A L Q+  +   +  +L+++ 
Sbjct  389  ENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMN  425

833) fliI in NC_021716


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  205 bits (764),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 164/383 (43%), Positives = 252/383 (66%), Gaps = 6/383 (1%)

Query  59   AEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLDGLG-  117
            A+VVG+  + T L      +G+  +  + P  R  +  VG ++LG V+D  G+ ++ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  118  EID--AEARAPTTRPPMNPLIRRPINAPMDVGVRAINALNTVGVGQRMGLFAGSGVGKSV  175
            E+   +E R     PP  +  R  +  P+  GVRAI++L T GVGQRMG+FA++G GK++
Sbjct  109  EVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  176  LLGMMTRGCEADvvvvglvgergrevKEFIHDILTEEERQRAVVVAAPADTSPLMRLKGC  235
            L+ M+    EADV V+GL+GERGREV EF++ + + + +++ V+V A +D +++ R ++ 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  236  ETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALVE  295
            + A T+AEYFRD+G +V+L+IDS+TRYA A R++ALA GE PA +GYP+SVF  LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  296  RAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIEA  355
            R+G  SE  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  356  SISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAINA  415
            S+SRV   V +  H   A  +R++ +   + Q +I +G Y  G +   D A++   +++A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  416  LLQQGMKQVIPYDESLEGMAALA  438
             L Q + Q  ++D++L GM A+A
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAFA  428

834) fliI in NC_018678


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  205 bits (764),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 163/383 (43%), Positives = 252/383 (66%), Gaps = 6/383 (1%)

Query  59   AEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLDGLG-  117
            A+VVG+  + T L      +G+  +  + P  R  +  VG ++LG V+D  G+ ++ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  118  EIN--ADARAPTTRPPMNPLIRRPINTPMDVGVRAINALNTVGVGQRMGLFAGSGVGKSV  175
            E+   ++ R     PP  +  R  +  P+  GVRAI++L T GVGQRMG+FA++G GK++
Sbjct  109  EVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  176  LLGMMTRGCEADvvvvglvgergrevKEFIHEILTEEERQRAVVVAAPADTSPLMRLKGC  235
            L+ M+    EADV V+GL+GERGREV EF++ + + + +++ V+V A +D +++ R ++ 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  236  ETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALVE  295
            + A T+AEYFRD+G +V+L+IDS+TRYA A R++ALA GE PA +GYP+SVF  LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  296  RAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIEA  355
            R+G  SE  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  356  SISRVMPMVVSEEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAINA  415
            S+SRV   V +  H   A  +R++ +   + Q +I +G Y  G +   D A++   +++A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  416  LLQQGMKQVIPYDESLEGMAALA  438
             L Q + Q  ++D++L GM A+A
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAFA  428

835) fliI in NC_018692


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  205 bits (761),  Expect = 6e-54, Method: Compositional matrix adjust.
 Identities = 164/383 (43%), Positives = 252/383 (66%), Gaps = 6/383 (1%)

Query  59   AEVVGFGDDITYLMPTEAVRGIVPGSRVMPLNRQSGLPVGMGLLGRVVDGNGQPLDGLG-  117
            A+VVG+  + T L      +G+  +  + P  R  +  VG ++LG V+D  G+ ++ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  118  EIN--AEARAPTTRPPMNPLIRRPINTPMDVGVRAINALNTVGVGQRMGLFAGSGVGKSV  175
            E+   +E R     PP  +  R  +  P+  GVRAI++L T GVGQRMG+FA++G GK++
Sbjct  109  EVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  176  LLGMMTRGCEADvvvvglvgergrevKEFIHEILTEEERQRAVVVAAPADTSPLMRLKGC  235
            L+ M+    EADV V+GL+GERGREV EF++ + + + +++ V+V A +D +++ R ++ 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  236  ETAVTIAEYFRDKGMKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALVE  295
            + A T+AEYFRD+G +V+L+IDS+TRYA A R++ALA GE PA +GYP+SVF  LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  296  RAGNGSERQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRALADSGHYPAIDIEA  355
            R+G  SE  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  356  SISRVMPMVVSDEHQLMARRIRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAINA  415
            S+SRV   V +  H   A  +R++ +   + Q +I +G Y  G +   D A++   +++A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  416  FLQQGMKQVLPYDESLEGMAALA  438
             L Q + Q  ++D++L GM A+A
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAFA  428

836) fliI in NC_014012


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  205 bits (761),  Expect = 6e-54, Method: Compositional matrix adjust.
 Identities = 164/409 (41%), Positives = 264/409 (65%), Gaps = 12/409 (2%)

Query  32   RVVGLTLEATGCRAPIGSLCSI------ETLVGDLVAEVIGFDDNILYLMPIEELRGVLP  85
            ++ G  +EA     +IG LC I        +V+   A+V+G++ +   L  I + +G+  
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVAR--AQVVGLQRERTVLSLIGNAQGLSR  72

Query  86   GAKVTPLGEQTGLNVGLSLLGRVLDGNGQPLDNLGRLQTDQKAPRHSPTINP--LARRAI  143
            +  + P G   +  VG S+LG VLD  G+ ++ +    +     R      P   +R ++
Sbjct  73   DVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGV  132

Query  144  TEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADIIvvglvgergre  203
             EPL  GVRAI+++LT G GQRMG+FA++G GK++L+ M+   T AD++V+GL+GERGRE
Sbjct  133  REPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGRE  192

Query  204  vKEFIEEILGEEGRARSVVVAAPADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLT  263
            V EF++ + + + + + V+V A +D +++ R  A + +T +AEYFRD G  V+L++DS+T
Sbjct  193  VTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMT  252

Query  264  RYAQAQREIALAVGEPPATKGYPPSVFAKLPKLVERAGNGGPGQGSITAFYTVLTEGDDL  323
            RYA+A R++ALA GE PA +GYP+SVF +LP+L+ER+  G+ ++GSITAFYTVL E+++ 
Sbjct  253  RYARALRDVALASGERPARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEE  310

Query  324  QDPIADAARAILDGHIVLSRSLADSGHYPAIDVEASISRVAPMVISTEHLESMRRVKQVY  383
             DP+AD  R+ILDGH+ LSR LA+ GHYPAIDV  S+SRV   V +  H E    V+++ 
Sbjct  311  ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLM  370

Query  384  SLFQQNKDLISIGAYTQGSDPRIDNAIRLQPAMNAFLRQKMKESLSFDS  432
            + +++ + +I +G Y  G +   D A++++ +++A L Q + +  SFD 
Sbjct  371  TRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

837) fliI1 in NC_012559


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  205 bits (761),  Expect = 7e-54, Method: Compositional matrix adjust.
 Identities = 151/345 (44%), Positives = 242/345 (71%), Gaps = 10/345 (2%)

Query  119  VGMKLLGRIVDSLGRPLD----EAGPVHPDTFYPLHAAPINPLDRDPVRSSMDVGVRAIN  174
            VG  +LG ++D+ G+ ++    E +P+  +    ++ AP +   R  VR ++  GVRAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGVREPLITGVRAID  144

Query  175  GLLTVGRGQRLGLFAGSGVGKSVLLGMMAKYTRADVVVVGLIGERGREVKDFIENILGEE  234
            GLLT G GQR+G+FA++G GK++L+ M+   T ADV V+GLIGERGREV +F++ + + +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  235  GLaravvvaapaDTPPLMRLHGAAYATALAEYYRDQGLDVLLLMDSVTRYAMAQREIALA  294
               + V+V A +D P++ R ++A  AT++AEY+RDQG  V+L++DS+TRYA A R++ALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  295  IGEPPVTRGYPPSVFAKLPQLIERAGNGRAGGGSITAFYTVLSEGDDQQDPVADSSRAIL  354
             GE P  RGYP+SVF +LP+L+ER+G   ++ GSITAFYTVL E++++ DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPMADEIRSIL  322

Query  355  DGHFVLNRRLAEAGHYPAIDIEQSISrvmvdvvsadhvasarrFKQFYSRYQRNLDL-IS  413
            DGH+ L+R+LA  GHYPAID+ +S+SRV  +V ++ H   A   +++ +R + +L+L I 
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE-ELQLFID  381

Query  414  VGAYVSGADPMLDEAIRRHDMMESFLIQPAHKASFFAESVTALNA  458
            +G Y +G +   D A++ +D + + L QP  + S F ++++++NA
Sbjct  382  LGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNA  426

838) fliI in NC_008229


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  204 bits (757),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 141/352 (41%), Positives = 238/352 (68%), Gaps = 11/352 (3%)

Query  81   DKVLFLKE-GLNFPVGHNLLGRVLNPLGQVID----NKGALDYERLAPVITTPIAPLKRG  135
            D VL+    +L+  VG ++LG VL+P G++++    + +++  ER+  V   + A+  R 
Sbjct  73   DVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RV  130

Query  136  LIDEIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCLVPIKVIALIGERG  195
             + E +  GV++IDGLLTCG GQ++GIFA++G GK+ LM M+       + VI+LIGERG
Sbjct  131  GVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERG  190

Query  196  REIPEFIEKNLQGDL--SSCVLVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMD  253
            RE+ EF++  L++      CVLV ATSD +++ R  +A  A +VAEYF++QG  V++++D
Sbjct  191  REVTEFVDM-LRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFID  249

Query  254  SVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEEGKGSITAFFSVLVEGD  313
            S+TR+A A R+++LA GE P+ +GYP+S +  LP+L+ER+G   + GSITAF++VL+E++
Sbjct  250  SMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPG-ATSEGSITAFYTVLLESE  308

Query  314  DLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIISESQNLYARKFRR  373
            + +DP+AD+ RSILDGH+ LSR L++ G YP+I++L+S SRV  ++ + ++   A   R+
Sbjct  309  EEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRK  368

Query  374  LYALLKENEMLIRIGSYQMGNDKELDEAINKKALMEQFLVQDENALQPFEQS  425
            L + L E +++I +G Y+ G++ + D A++ +  +   L Q      +F+++
Sbjct  369  LMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

839) Neut_0742 in NC_008344


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  204 bits (758),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 143/355 (41%), Positives = 239/355 (68%), Gaps = 8/355 (2%)

Query  117  AADRAKHISVGPELLGRVLNGVGEPLDR----LGPLQCGHNVPLYGRPFNPLERAPIEKI  172
            +++RA    VG  +LG VL+  G  ++R    ++P+   + + +   ++ +  R  +   
Sbjct  78   PTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREP  135

Query  173  LDVGVRAINTLLSVGRGQRMGLFAGSGVGKSVLLGMMARYTSADVIVVALIGERGREVQE  232
            L  GVRAI+ LL+ G GQRMG+FA++G GK++L+ M+   T ADV+V++LIGERGREV E
Sbjct  136  LITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  233  FIETILGEEGLARSVVVAAPADTSPLMRLHGAAYATAIAEYFRDEGKHVLLIMDSLTRFA  292
            F++ + + +   + V+V A +D +++ R ++A  AT++AEYFRD+GK+V+L++DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  293  MAQREISLAIGEPPATKGYPPSVFARLPQLVERAGNGRRGSGSITAFYTVLaenddpndp  352
             A R+++LA GE PA +GYP+SVF  LP+L+ER+G    + GSITAFYTVL E+++  DP
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGAT--SEGSITAFYTVLLESEEEADP  313

Query  353  iadnaraILDGHIVLSRHLADAGHYPAIDIESSISRVMASLVTREQLGQAQRFKALYSRY  412
            +AD+ R+ILDGH+ LSR LA+ GHYPAID+  S+SRV + + T  +  QA   + L +R 
Sbjct  314  MADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRL  373

Query  413  QRSHDLISVGAYISGTDPQLDQAIALYPALESFLQQGMFEQENYAKSMDKLTTLN  467
            +  + +I +G Y +G + + D+A+ +  +L + L Q + +  ++  ++  + ++ 
Sbjct  374  EELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFA  428

840) Pmen_4414 in NC_009439


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  204 bits (759),  Expect = 8e-54, Method: Compositional matrix adjust.
 Identities = 160/388 (42%), Positives = 256/388 (66%), Gaps = 18/388 (4%)

Query  58   AQVVGFNRDITYLMPFKKPVGLAAGSRVFPAKDEALLQIDESWLGRVVNGLGEPLDERGK  117
            AQVVG++R+ T L  + ++ GL+ +  ++P+ + AL     +W+G  V  LG  LD  GK
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPT-GRAL----SAWVGYSV--LGAVLDPTGK  101

Query  118  LSGR-----DPLP----VELPTVNPLKRRPVEAALDVGVRAINALLTLGKGQRVGLFAGS  168
            +  R      P++    ++++  +   R  V  +L  GVRAI++LLT G GQR+G+FA++
Sbjct  102  IVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASA  161

Query  169  GVGKSVLLGMITRQTKADVVVVGLIGERGREVQEFLLHSLGEEGLRKAVVVVAPANESPL  228
            G GK++L+ M+  QT ADV V+GLIGERGREV EF+    + +   K V+V A ++ +++
Sbjct  162  GCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSV  221

Query  229  MRLKATELCHSIAAYFRDQGQDVLLLVDSLTRYAMAQREIALALGEPPATKGYPPSVFGM  288
             R +A++L  ++A YFRDQG+ V+L++DS+TRYA A R++ALA GE PA +GYP+SVF+ 
Sbjct  222  DRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDN  281

Query  289  LPELVesagngesgsgslsaIYTVLAEGDDHQDPIVDCARAILDGHIVLSRRLADVGHYP  348
            LP L+     G ++ GS++A+YTVL E++++ DP+ D  R+ILDGH+ LSR+LA+ GHYP
Sbjct  282  LPRLL--ERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYP  339

Query  349  AIDISASVSRCMSQVGEPAHLGAARQFKEFYSTYEKIKELIPLGGYTPGMDAKTDRAVQL  408
            AID+  SVSR  +QV  P+H   A   + + +  E ++ +I LG Y PG +   DRA+Q+
Sbjct  340  AIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQM  399

Query  409  APSLERFLRQEVGSGAELGASIATLQGI  436
              SL   L Q V+  + ++ +++ ++++
Sbjct  400  RDSLKAWLCQPVAQYSSFDDTLSGMNAF  427

841) fliI in NC_009831


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  204 bits (759),  Expect = 8e-54, Method: Compositional matrix adjust.
 Identities = 168/408 (42%), Positives = 268/408 (66%), Gaps = 8/408 (1%)

Query  32   RVVGLTLEATGCRAPIGSLCSI--ETLAGELVA--EVIGFDGELLYLMPIEELRGVLPGA  87
            ++ G  +EA     +IG LC I       ++VA  +V+G++ E   L  I + +G+  + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  88   KVTPLGEQTGLNVGMSLLGRVLDGSGHPLDGLGRLQTEQRAPRHSQVINP--LSRRAITE  145
             + P G   +  VG S+LG VLD +G  ++ +    +     R  +V  P   SR ++ E
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  146  PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADvivvglvgergrevk  205
            PL  GVRAI+++LT G GQRMG+FA++G GK++L+ M+   T ADV+V+GL+GERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  206  eFIEEILGEEGRARSVVVAAPADTSPLMRLRACETSTRIAEYFRDLGYNVLLLMDSLTRY  265
            EF++ + + + + + V+V A +D +++ R  A + +T +AEYFRD G  V+L++DS+TRY
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  266  AQAQREIALAVGEPPATKGYPPSVFAKLPKLVERAGNGGPGQGSITAFYTVLTEGDDLQD  325
            A+A R++ALA GE PA +GYP+SVF +LP+L+ER+  G+ ++GSITAFYTVL E+++  D
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEAD  312

Query  326  PIADAARAILDGHIVLSRSLADSGHYPAIDIEASISRVAPMVISPEHLESMRCVKQVYSL  385
            P+AD  R+ILDGH+ LSR LA+ GHYPAID+  S+SRV   V +P H E    V+++ + 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  386  FQQNKDLISIGAYTQGSDPRIDNAIRLQPAMNAFLRQTMKEALSFDSS  433
            +++ + +I +G Y  G +   D A++++ +++A L Q + +  SFD +
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

842) fliI in NC_008345


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  204 bits (759),  Expect = 8e-54, Method: Compositional matrix adjust.
 Identities = 162/399 (41%), Positives = 265/399 (67%), Gaps = 18/399 (4%)

Query  46   PVGSLCSI------ETMVGELVAEVVGFDDKLLYLMPIEELRGVLPGARVKPLGEQSGLN  99
            ++G LC I        +V+   A+VVG++     L  I + +G+  +  + P G   +  
Sbjct  29   AIGELCEIRRGWHQKQVVAR--AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW  86

Query  100  VGLSLLGRVLDGSGVPLD----GLGPLNTDQHASRHGP-YINPLSRRAITEPLDVGVRAI  154
            VG S+LG VLD +G  ++     ++P++ ++      P Y    SR ++ EPL  GVRAI
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA---SRVGVREPLITGVRAI  143

Query  155  NSMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGSKADIIvvglvgergrevKEFIEDILGK  214
            +++LT G GQRMG+FA++G GK++L+ M+   + AD++V+GL+GERGREV EF++ + + 
Sbjct  144  DGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRAS  203

Query  215  EGRARSVVVAAPADTSPLMRLRACETSTRIAEYFRDLGYDVLLLMDSLTRYAQAQREVAL  274
            + + + V+V A +D +++ R  A + +T +AEYFRD G  V+L++DS+TRYA+A R+VAL
Sbjct  204  HKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVAL  263

Query  275  AVGEPPATKGYPPSVFAKLPRLVERAGNGGAGQGSITAFYTVLTEGDDQQDPIADASRAI  334
            A GE PA +GYP+SVF +LPRL+ER+  G++++GSITAFYTVL E++++ DP+AD  R+I
Sbjct  264  ASGERPARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSI  321

Query  335  LDGHIVLSRQLADSGHYPAIDVEASISRVAPMVISEEHLEAMRKVKQMYSLYQQNRDLIS  394
            LDGH+ LSR+LA+ GHYPAIDV  S+SRV   V +  H E    V+++ +  ++ + +I 
Sbjct  322  LDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFID  381

Query  395  IGAYSQGSDPRIDNAIRLQPAMNAFLRQGFKEPMTFEES  433
            +G Y  G +   D A++++ +++A L Q   +  +F+++
Sbjct  382  LGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDT  420

843) fliI1 in NC_005085


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  203 bits (756),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 146/337 (44%), Positives = 227/337 (68%), Gaps = 8/337 (2%)

Query  124  VGASLLGRVLDSLGRPLD----GLGPIHPDAWFPLYSQPMNPLHRTPVHDVLDVGVRAIN  179
            VG S+LG VLD+ G+ ++     ++PI  +    +   P +   R  V++ L  GVRAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEER--VIDVAPPSYASRVGVREPLITGVRAID  144

Query  180  GLLTVGRGQRLGLFAGSGVGKSVLLGMMARFTKADVVVVGLIGERGREVKDFIENILGEE  239
            GLLT G GQR+G+FA++G GK++L+ M+   T ADV V+GLIGERGREV +F++ + + +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  240  GRARSVVVAAPADMPPLMRLHGAAYATALAEYFRSQGLDVLLLMDSVTRFAMAQREIALA  299
             + + V+V A +D P++ R ++A  AT++AEYFR QG  V+L++DS+TR+A A R++ALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  300  IGEPPVTRGYPPSVFARLPQLIERAgngeegggSITGFYTVLSEGDDQQDPIADSARAIL  359
             GE P  RGYP+SVF  LP+L+ER+  G  + GSIT+FYTVL E++++ DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEADPMADEIRSIL  322

Query  360  DGHFVLSRDLAEAGHYPAIDIEQSISRvmvdvvpqqqmdLARHFKQLYSRYQRNRDLISV  419
            DGH+ LSR LA  GHYPAID+ +S+SRV  +V    + + A   ++L +R +  + +I +
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  420  GAYVSGSDPVLDDAMRRQLPMVSFLTQPMHESHDYAS  456
            G Y +G +   D AM+ + ++ + L QP+ +   +  
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

844) fliI in NC_011757


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  203 bits (753),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 140/311 (46%), Positives = 224/311 (73%), Gaps = 8/311 (2%)

Query  106  GRVIDALGRPVDGLGP-LAEGPASVPLDADPPAAMTRARVKTPLPTGVRAID-LFTPLCA  163
            G V+D+ G+ V+ + P +A  +    +D  PP+  +R  V+ PL TGVRAID L+T  C+
Sbjct  93   GAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT--CG  150

Query  164  -GQRIGIFAGSGVGKSTLLAMLAGAQGFDSVVVALVGERGREVREFLEG-Piaaardrav  221
             GQR+GIFA++G GK+ L+ ML      D  V++L+GERGREV EF++    +  +++ V
Sbjct  151  VGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCV  210

Query  222  ivvSTGDESPMMRRQAPKVALAVAESFRDRGESVLLIVDSVTRYAHAARDVALAAGEPAV  281
            +V +T+D +++ R +A+++A +VAE FRD+G  V+L++DS+TRYA+A RDVALA+GE + 
Sbjct  211  LVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPA  270

Query  282  ARGYPPSVFSDLPRLLERAGPGAEGTGTITGIFSVLVDGDDHNDPVADSIRGTLDGHVVL  341
             RGYP+SVF +LPRLLER  PGA + G+IT++++VL++++++ DP+AD IR+ LDGH+ L
Sbjct  271  RRGYPASVFDNLPRLLER--PGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYL  328

Query  342  DRAIAEQGRYPAIELLGSISRLAGEVWTGDQRELVRKLKSMMARFEETRDLRLMGGYRAG  401
             R +A QG+YPAI++L S+SR+ G+V T  + E    ++ +M+R+EE + +  +G YR+G
Sbjct  329  SRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPG  388

Query  402  SDPDLDQAVSL  412
             + D D+A+ +
Sbjct  389  ENIDNDRAMQM  399

845) fliI in NC_012988


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  202 bits (752),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 140/311 (46%), Positives = 224/311 (73%), Gaps = 8/311 (2%)

Query  106  GRVIDALGRPVDGLGP-LAEGPASVPLDADPPAAMTRARVKTPLPTGVRAID-LFTPLCA  163
            G V+D+ G+ V+ + P +A  +    +D  PP+  +R  V+ PL TGVRAID L+T  C+
Sbjct  93   GAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT--CG  150

Query  164  -GQRIGIFAGSGVGKSTLLAMLAGAQGFDSVVVALVGERGREVREFLEG-Piaaardrav  221
             GQR+GIFA++G GK+ L+ ML      D  V++L+GERGREV EF++    +  +++ V
Sbjct  151  VGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCV  210

Query  222  ivvSTGDESPMMRRQAPKVALAVAESFRDRGESVLLIVDSVTRYAHAARDVALAAGEPAV  281
            +V +T+D +++ R +A+++A +VAE FRD+G  V+L++DS+TRYA+A RDVALA+GE + 
Sbjct  211  LVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPA  270

Query  282  ARGYPPSVFSDLPRLLERAGPGAEGTGTITGIFSVLVDGDDHNDPVADSIRGTLDGHVVL  341
             RGYP+SVF +LPRLLER  PGA + G+IT++++VL++++++ DP+AD IR+ LDGH+ L
Sbjct  271  RRGYPASVFDNLPRLLER--PGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYL  328

Query  342  DRAIAEQGRYPAIELLGSISRLAGEVWTGDQRELVRKLKSMMARFEETRDLRLMGGYRAG  401
             R +A QG+YPAI++L S+SR+ G+V T  + E    ++ +M+R+EE + +  +G YR+G
Sbjct  329  SRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPG  388

Query  402  SDPDLDQAVSL  412
             + D D+A+ +
Sbjct  389  ENIDNDRAMQM  399

846) fliI in NC_010172


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  202 bits (752),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 140/311 (46%), Positives = 224/311 (73%), Gaps = 8/311 (2%)

Query  106  GRVIDALGRPVDGLGP-LAEGPASVPLDADPPAAMTRARVKTPLPTGVRAID-LFTPLCA  163
            G V+D+ G+ V+ + P +A  +    +D  PP+  +R  V+ PL TGVRAID L+T  C+
Sbjct  93   GAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT--CG  150

Query  164  -GQRIGIFAGSGVGKSTLLAMLAGAQGFDSVVVALVGERGREVREFLEG-Piaaardrav  221
             GQR+GIFA++G GK+ L+ ML      D  V++L+GERGREV EF++    +  +++ V
Sbjct  151  VGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCV  210

Query  222  ivvSTGDESPMMRRQAPKVALAVAESFRDRGESVLLIVDSVTRYAHAARDVALAAGEPAV  281
            +V +T+D +++ R +A+++A +VAE FRD+G  V+L++DS+TRYA+A RDVALA+GE + 
Sbjct  211  LVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPA  270

Query  282  ARGYPPSVFSDLPRLLERAGPGAEGTGTITGIFSVLVDGDDHNDPVADSIRGTLDGHVVL  341
             RGYP+SVF +LPRLLER  PGA + G+IT++++VL++++++ DP+AD IR+ LDGH+ L
Sbjct  271  RRGYPASVFDNLPRLLER--PGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYL  328

Query  342  DRAIAEQGRYPAIELLGSISRLAGEVWTGDQRELVRKLKSMMARFEETRDLRLMGGYRAG  401
             R +A QG+YPAI++L S+SR+ G+V T  + E    ++ +M+R+EE + +  +G YR+G
Sbjct  329  SRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPG  388

Query  402  SDPDLDQAVSL  412
             + D D+A+ +
Sbjct  389  ENIDNDRAMQM  399

847) fliI in NC_020561


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  202 bits (751),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 142/335 (43%), Positives = 225/335 (68%), Gaps = 14/335 (4%)

Query  94   RPSTAWLGRMIDGLGRPVDGKGVLLAGAVP--------RPIKAMPPLASARARVGAKIET  145
            R+ +AW+G     LG  +D  G ++    P        R I   PP  ++R  V   + T
Sbjct  81   RALSAWVG--YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  146  GVRALDIFAPLC-LGQRLGLFAGSGVGKSTLLSMLARWTQCDVAVIGLIGERGREVQEFV  204
            GVRA+D +   C +GQR+G+FA++G GK+ L+ ML   T+ DV VIGLIGERGREV EFV
Sbjct  139  GVRAIDGLLT-CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFV  197

Query  205  EDDLGPDGLARSVVVVATSDEPALMRRQAAWTTLAVAEYFRDQGLNVLCLMDSVTRFAMA  264
            +   +++   + V+V ATSD P++ R +AA  + +VAEYFRDQG  V+ ++DS+TR+A A
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  265  QREIGLASGEPPATKGYTPTVFAELPRLLERAGPGLAGQGSITGLFTVLVDGDDHNEPVA  324
             R+++LASGE PA +GY ++VF +LPRLLER  PG +++GSIT+++TVL++++++ +P+A
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLER--PGATSEGSITAFYTVLLESEEEADPMA  315

Query  325  DAVRGILDGHVVITRRIAERGRYPAIDVLKSVSRTLPHAHSEEENLVRLAARRTLSTYGD  384
            D +R+ILDGH+ ++R++A +G+YPAIDVLKSVSR + +  +  +     A R+ ++   +
Sbjct  316  DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEE  375

Query  385  MEEMVRLGAYRTGASAEVDQAVLLAPRIEALLNQS  419
            ++  + LG YR G + + D+A+ +   + A L Q+
Sbjct  376  LQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQP  410

848) fliI in NC_012808


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  202 bits (751),  Expect = 4e-53, Method: Compositional matrix adjust.
 Identities = 139/311 (45%), Positives = 224/311 (73%), Gaps = 8/311 (2%)

Query  106  GRVIDALGRPIDGLGP-LAEGPASVPLDADPPAAMTRARVKTPLPTGVRAID-LFTPLCA  163
            G V+D+ G+ ++ + P +A  +    +D  PP+  +R  V+ PL TGVRAID L+T  C+
Sbjct  93   GAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT--CG  150

Query  164  -GQRIGIFAGSGVGKSTLLAMLAGAQGFDSVVVALVGERGREVREFLEG-Piaaardrav  221
             GQR+GIFA++G GK+ L+ ML      D  V++L+GERGREV EF++    +  +++ V
Sbjct  151  VGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCV  210

Query  222  ivvSTGDESPMMRRQAPKVALAVAESFRDRGESVLLIVDSVTRYAHAARDVALAAGEPAV  281
            +V +T+D +++ R +A+++A +VAE FRD+G  V+L++DS+TRYA+A RDVALA+GE + 
Sbjct  211  LVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPA  270

Query  282  ARGYPPSVFSDLPRLLERAGPGAEGTGTITGIFSVLVDGDDHNDPVADSIRGTLDGHVVL  341
             RGYP+SVF +LPRLLER  PGA + G+IT++++VL++++++ DP+AD IR+ LDGH+ L
Sbjct  271  RRGYPASVFDNLPRLLER--PGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYL  328

Query  342  DRAIAEQGRYPAIELLGSISRLAGEVWTGDQRELVRKLKSMMARFEETRDLRLMGGYRAG  401
             R +A QG+YPAI++L S+SR+ G+V T  + E    ++ +M+R+EE + +  +G YR+G
Sbjct  329  SRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPG  388

Query  402  SDPDLDQAVSL  412
             + D D+A+ +
Sbjct  389  ENIDNDRAMQM  399

849) fliI in NC_017082


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  202 bits (749),  Expect = 5e-53, Method: Compositional matrix adjust.
 Identities = 134/320 (42%), Positives = 220/320 (69%), Gaps = 13/320 (4%)

Query  104  PSWKGRVINALGAPLDGQGPL----TPGSRPVSAE----AEAPSAMKRARVHKPLRTGVR  155
            ++W G   + LGA LD  G +    TP   P+S E      +PS   R  V+ PL TGVR
Sbjct  84   SAWVG--YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVR  141

Query  156  VIDLFAPICAGQRVGIFAGSGVGKSTLLAMLARSQGFDTVVLALVGERGREVREFIEDVL  215
             ID +     GQR+GIFA++G GK+ L+ ML      D  V++L+GERGREV EF++ + 
Sbjct  142  AIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLR  201

Query  216  GANRS-RAITIVSTGDESPMMRRLAPKTAMAVAEYFRDRGESVLLVVDSITRFAHAAREV  274
            ++++  + + + +T+D +++ R  A++ A +VAEYFRD+G  V+L +DS+TR+A+A R+V
Sbjct  202  ASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDV  261

Query  275  ALAAGEPAVARGYAPTVFTDLPRLLERAGPGEEGSGTITGIFSVLVDGDDHNEPIADTIR  334
            ALA+GE +  RGY+++VF +LPRLLER  PG  + G+IT++++VL++++++ +P+AD IR
Sbjct  262  ALASGERPARRGYPASVFDNLPRLLER--PGATSEGSITAFYTVLLESEEEADPMADEIR  319

Query  335  STLDGHIVLSRHIADQARYPAVDVLASVSRLAHNVWDPEERELVSKLRTMMSKYEDTRDL  394
            S LDGH+ LSR +A+Q++YPA+DVL SVSR+  +V  P + E  S +R +M++ E+ + +
Sbjct  320  SILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLF  379

Query  395  RLMGGYQAGRDSGLDQAVDL  414
              +G Y++G + + D+A+++
Sbjct  380  IDLGEYRPGENIDNDRAMQM  399

850) Rvan_2563 in NC_014664


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  201 bits (746),  Expect = 1e-52, Method: Compositional matrix adjust.
 Identities = 146/334 (44%), Positives = 233/334 (70%), Gaps = 5/334 (1%)

Query  121  GRVIDALGRPIDN-GPPLARGRRSIPVDQAPPLALERQRVSEPVPTGVRVIDVFTPLCA-  178
            G V+D+ G+ ++   P +A       +D APP    R  V EP+ TGVR ID +   C+ 
Sbjct  93   GAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT-CGV  151

Query  179  GQRIGIFAGSGVGKSTLLSMLTRGSSFDVTVFAAIGERGREVREFIDDTlakaglakavl  238
            GQR+GIFA++G GK+ L+ ML   +  DV V++ IGERGREV EF+D   A     K VL
Sbjct  152  GQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVL  211

Query  239  vvSTSDESPMMRRLAAKTAFTVAEYFRDEGQRVLLVFDSVTRYAHAVREIALSSGEPPVS  298
            V +TSD +++ R  AA+ A TVAEYFRD+G+RV+L +DS+TRYA+A+R++AL+SGE P  
Sbjct  212  VFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPAR  271

Query  299  RGYPPSVFTDLPKLLERAGNASGTGSITGVFSVLVDGDDHNDPVADTLRGILDGHIVLDR  358
            RGYP+SVF +LP+LLER+G A++ GSIT+ ++VL++++++ DP+AD +R+ILDGH+ L R
Sbjct  272  RGYPASVFDNLPRLLERPG-ATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSR  330

Query  359  AIADQGRFPAVDILGSVSRLAPRVWSPSQKTAVRDLRGLISRFEETRDIRMIAGHKPNND  418
             +A+QG++PA+D+L SVSR+  +V +P++      +R L++R+EE + +  ++  +P ++
Sbjct  331  KLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGEN  390

Query  419  AELDKAVRLVPALYRYLTQSAEDLHP-GETLDDM  451
             + D+A+++  +L   L Q+  +  + ++TL +M
Sbjct  391  IDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGM  424

851) fliI in NC_007481


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  201 bits (748),  Expect = 6e-53, Method: Compositional matrix adjust.
 Identities = 151/337 (45%), Positives = 238/337 (71%), Gaps = 8/337 (2%)

Query  100  VGMSLLGRVVDGLGRPLD----GLGKINAEHYLKFAQKPINPLSRRPISQPMDVGVRAIN  155
            VG S+LG V+D  G+ ++     ++ I+ E+ +  A  +    SR  + +P+  GVRAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA--SRVGVREPLITGVRAID  144

Query  156  SVITVGQGQRMGLFAGSGVGKSVLLGMMTRGSEADvivvglvgergrevkeFIEEILGVE  215
            +++T G GQRMG+FA++G GK++L+ M+   +EADV+V+GL+GERGREV EF++ + + +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  216  GRKRSVVVAAPADSSPLMRLKGCESAVTIAEYFRDQGLNVLLLLDSVTRYAMAQREIALA  275
             + + V+V A +D +++ R ++ + A T+AEYFRDQG  V+L++DS+TRYA A R++ALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  276  VGEPPATKGYPPSVFAKLPALVERAGNGGEGQGSITAFFTVLSEGDDMQDPIADAARAIL  335
             GE PA +GYP+SVF +LP L+ER+G  +E  GSITAF+TVL E+++  DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSIL  322

Query  336  DGHIVLSRELADSGHYPAIDIEKSISRVMPQVVSETHMQQARVLKQVYSMYQQNKDMITL  395
            DGH+ LSR LA+ GHYPAID+ KS+SRV  QV + TH +QA  ++++ +  ++ +  I L
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  396  GAYQKGTDQMLDQAINMMPRVNAFLQQGMRDVISYDD  432
            G Y+ G +   D+A++M   ++A L Q + +  S+DD
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

852) lfiI in NC_017075


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  201 bits (747),  Expect = 8e-53, Method: Compositional matrix adjust.
 Identities = 144/336 (43%), Positives = 228/336 (68%), Gaps = 7/336 (2%)

Query  100  GRIVDGLGEPVDGRGRLGGEHVLPAHPPRINPLKRRPVDAPLDVGVRAINGVLTLGKGQR  159
            G+IV+ +   V   + ++ E+V+   PP   +  R  V  PL  GVRAI+G+LT G GQR
Sbjct  100  GKIVERFTPEV---APISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTCGVGQR  154

Query  160  VGLMAgsgvgksvllglITRQTVADVVVVGLIGERGREVREFIDLSLGEAGLRRAVVVVA  219
            +G+ A++G GK++L+ ++  QT ADV V+GLIGERGREV EF+D+  +     + V+V A
Sbjct  155  MGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFA  214

Query  220  PADESPLMRLRATELCHTIAAHFRDQGQDVLLLVDSLTRYAMARREVALALGEPPATRGY  279
             +D +++ R  A++L  T+A  FRDQG+ V+L++DS+TRYA A R+VALA GE PA RGY
Sbjct  215  TSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGY  274

Query  280  PPSVFGRLPQLVESAGNGENPEGSMSAIYTVLAEGDDQQDPVVDTARAILDGHIVLSREL  339
            P+SVF+ LP+L+E +G    +EGS++A+YTVL E++++ DP+ D  R+ILDGH+ LSR L
Sbjct  275  PASVFDNLPRLLERPGA--TSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKL  332

Query  340  AERGHYPAIDIAQSISRCMALVTSHGHQAAARQLKSMAARHAQVRDLLPLGAYVPGADPA  399
            A +GHYPAID+ +S+SR  + VT+  H   A  ++ + +R  +++ ++ LG Y PG +  
Sbjct  333  AGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENID  392

Query  400  TDRAVQAYPAIEAYLQQGTREAAPLADSVQRLEELT  435
             DRA+Q   ++ A L Q   + +++ D++  ++ ++
Sbjct  393  NDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFA  428

853) fliI in NC_004463


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  199 bits (739),  Expect = 3e-52, Method: Compositional matrix adjust.
 Identities = 133/320 (42%), Positives = 221/320 (70%), Gaps = 13/320 (4%)

Query  100  PSWKGRVINALGAPLDGQGPL----TPGSRAVSAE----AEAPSAMKRARVHKPLRTGVR  151
            ++W G   + LGA LD  G +    TP   ++S E      +PS   R  V+ PL TGVR
Sbjct  84   SAWVG--YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVR  141

Query  152  VIDLFAPICAGQRVGIFAGSGVGKSTLLAMLARSQGFDTVVLALVGERGREVREFIEDVL  211
             ID +     GQR+GIFA++G GK+ L+ ML      D  V++L+GERGREV EF++ + 
Sbjct  142  AIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLR  201

Query  212  GANR-NRAVTIVSTGDESPMMRRLAPKTAMAVAEYFRDRGESVLLVVDSITRFAHAAREV  270
            ++++ ++ V + +T+D +++ R  A++ A +VAEYFRD+G  V+L +DS+TR+A+A R+V
Sbjct  202  ASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDV  261

Query  271  ALAAGEPAVARGYAPTVFTDLPRLLERAGPGEEGSGTITGIFSVLVDGDDHNEPIADTIR  330
            ALA+GE +  RGY+++VF +LPRLLER  PG  + G+IT++++VL++++++ +P+AD IR
Sbjct  262  ALASGERPARRGYPASVFDNLPRLLER--PGATSEGSITAFYTVLLESEEEADPMADEIR  319

Query  331  STLDGHIVLSRHIADQARYPAVDVLASVSRLAHNVWDPEERELVSKLRTMIAKYEDTRDL  390
            S LDGH+ LSR +A+Q++YPA+DVL SVSR+  +V  P + E  S +R ++++ E+ + +
Sbjct  320  SILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLF  379

Query  391  RLMGGYQSGRDSGLDQAIDL  410
              +G Y++G + + D+A+++
Sbjct  380  IDLGEYRPGENIDNDRAMQM  399

854) Swit_1290 in NC_009511


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  198 bits (737),  Expect = 5e-52, Method: Compositional matrix adjust.
 Identities = 157/384 (41%), Positives = 261/384 (68%), Gaps = 5/384 (1%)

Query  51   AEVVGFRGNRTLLMALDADAPHSAGARVEPDRRGGSVDVGETLLGRVMDALGNPIDGLGP  110
            A+VVG++ +RT+L  ++     S +  + P  R+ S  VG ++LG V+D+ G+ ++ + P
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  111  --IATAERWPLAGRRGNPLDRARVTEPFDMGVRAINALLTAGVGQRIAIAAGSGVGKSVL  168
               + +E + +     +   R  V EP+  GVRAI++LLT GVGQR++I A++G GK++L
Sbjct  109  EVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTML  168

Query  169  MGQMIAGADADIIVVGLVGERSREVSDFLATKLAGPVRQKSvvvavpadhppvLRLRAAM  228
            M  +I  ++AD++V+GL+GER+REV++F+    A+  ++K V+V   +D P+V R  AA 
Sbjct  169  MHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQ  228

Query  229  RATAIAEYFRAQGKRVLLLIDSLTRVAHAQREIGLSLGEPPTMKGYPPSALGLIPRLIER  288
             AT++AEYFR QGKRV+L+IDS+TR A+A R+++L+ GE P+ +GYP+S ++ +PRL+ER
Sbjct  229  LATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLER  288

Query  289  AGVDAHSGGSITALYTVLAdgddtddpivdTARAIVDGHIILSRSLAEQGVFPAIDVGKS  348
            +G  A S GSITA+YTVL ++++  DP+ D  R+I+DGH+ LSR LA QG +PAIDV KS
Sbjct  289  PG--ATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKS  346

Query  349  LSRVMSDIVTPEHQQAAQILRRLWAVYEENRDLILMGAYRAGSDPIVDVAIARHDHILEF  408
            +SRV +++ TP H + A  +R+L +  EE + +I +G YR+G +   D A+  +D +   
Sbjct  347  VSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAW  406

Query  409  ISQGQKDRIDYAQSVQALLEAFGG  432
            + Q   +   + +++ + ++AF++
Sbjct  407  LCQPVAQYSSFDDTLSG-MNAFAD  429

855) fliI in NC_012483


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  197 bits (732),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 144/343 (42%), Positives = 244/343 (72%), Gaps = 2/343 (0%)

Query  106  VGEGLIGRVLNALGQPLDR--AGSLRATDALPLERAVPHPLDRTPIRMPLGTGIRAIDSM  163
            VG +++G VL++ G+ ++R  +     ++   ++ A P    R  +R PL TG+RAID++
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGL  146

Query  164  LTVGRGQRVGIFGGSGVGKSTLIGMMTRNSDADVIvvglvgergrevgefleDSLGPEGR  223
            LT G GQR+GIF+++G GK+ L+ M+  +++ADV+V+GL+GERGREV EF++   +++ +
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  224  KRSVVVVSTSDQtpllrmraalaattvaEYFADQGKHVLLVLDSLTRFAMAAREVGLAAG  283
             + V+V +TSD  ++ R  AA  ATTVAEYF DQGK+V+L +DS+TR+A A R+V+LA+G
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  284  EPPTAKGYTPSVFSRLAQLVERAGQFREGSITAFYTVLMEGDDQQDTLVDAVRSYLDGHV  343
            E P+ +GY +SVF  L++L+ER+G   EGSITAFYTVL+E++++ D + D +RS LDGH+
Sbjct  267  ERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHL  326

Query  344  VLSRTLASQGWYPPIELLDSISRLMPSVASGEHRGAAATVRRMLAAYARSEDLVRIGAYK  403
             LSR LA+QG YP+I++L S+SR+   V++  H   A++VR++++     + ++ +G Y+
Sbjct  327  YLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYR  386

Query  404  AGTDPELDDALRTREAVRAFLMQDAGEAVSFAEAREGLIRLSE  446
            +G + + D A++ R++++A L Q  ++  SF ++  G+  +++
Sbjct  387  PGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

856) fliI in NC_016002


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  197 bits (730),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 164/385 (43%), Positives = 260/385 (68%), Gaps = 7/385 (1%)

Query  55   QAQVVGFKREVSYLMPFKKPVGLTTGARVQPAPDAAGLFIGPSWLGRIVNGLGEPLD---  111
            +AQVVG++RE + L  + ++ GL+ +  + P+  A +  +G S LG +++  G  ++   
Sbjct  48   RAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFT  107

Query  112  -GLGRLGGEHPLAAHPPRVNPLKKRPVDTPLDVGVRAINGLLTLGRGQRVGLFAGSGVGK  170
              ++ ++ E+ +   PP   +  +  V  PL  GVRAI+GLLT G GQR+G+FA++G GK
Sbjct  108  PEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGK  165

Query  171  SVLLGMITRHTEADVVVVGLIgergrevrefveHALGAEGLAKAVLVVAPADESPLMRLK  230
            ++L+ M+  +TEADV V+GLIGERGREV EFV+   +++   K VLV A +D +++ R +
Sbjct  166  TMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCN  225

Query  231  ATELTHTIAAHFRDQGRHVLLLVDSLTRYAMAQREVALALGEPPATRGYPPSVFGLLPTL  290
            A++L+ T+A  FRDQG++V+L++DS+TRYA A R+VALA GE PA RGYP+SVF+ LP L
Sbjct  226  AAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRL  285

Query  291  aesagngegegsmsaIYTVLAEGDDQQDPVVDTARAILDGHIVLSRGLAERGHYPAIDIA  350
                  + +EGS++A+YTVL E++++ DP+ D  R+ILDGH+ LSR LA +GHYPAID+ 
Sbjct  286  -LERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVL  344

Query  351  ASVSRCMGLVAGASQREAARTLRGLWARYQEVRALIPLGGYVPGADAETDRAVQRMPLIE  410
             SVSR  G V+ +++ E A ++R L +R +E++ +I LG Y PG + + DRA+Q    + 
Sbjct  345  KSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLK  404

Query  411  RFLRQDAAVAAPYGATLQQLEELSA  435
              L Q  A  ++++ TL  ++ ++ 
Sbjct  405  AWLCQPVAQYSSFDDTLSGMNAFAD  429

857) fliI in NC_014006


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  196 bits (729),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 156/380 (42%), Positives = 258/380 (68%), Gaps = 7/380 (1%)

Query  61   RAEVVGFRGDRTLLVPLDADAPLENGARVEPDSQATMVQVGEGLIGRVIDAMGQPLDRKG  120
            RA+VVG++ +RT+L  ++    L  +  + P ++A    VG +++G V+D+ G+ ++R  
Sbjct  48   RAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFT  107

Query  121  PIIA--GGSWPLNGVKGNVLDRGRVTEPFDLGVRAVNALLTAGRGQRIAIIAGSGVGKSV  178
            P +A  +  + ++    +   R  V EP+  GVRA+++LLT G GQR++I+A++G GK++
Sbjct  108  PEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  179  LMGQMIQGAEADIVVAGLIGERGREVSDFLETKLKGA--MHKSIVVAVPADHPPVLrlra  236
            LM  +I+ +EAD+ V GLIGERGREV++F++  L+++   +K ++V   +D P+V R  A
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVD-MLRASHKKEKCVLVFATSDFPSVDRCNA  226

Query  237  aarataiaeyfraRGKKVLLLIDSLTRCAHAQREIGLALGEPPAMKGYPPSALALIPRLV  296
            A  AT++AEYFR +GK+V+L+IDS+TR A+A R+++LA GE PA +GYP+S +  +PRL+
Sbjct  227  AQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLL  286

Query  297  ERAGVDARSGGSITALYTVLADGDDTDDPIVDAARAIVDGHFVLSRHLSEQAIFPAIDVG  356
            ER+G  A S GSITA+YTVL ++++  DP+ D  R+I+DGH+ LSR L+ Q+ +PAIDV 
Sbjct  287  ERPG--ATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVL  344

Query  357  KSLSRVMADVVPDEHRMaaaayrrlwaayEENRDLILMGAYRPGNDPVIDEAVQRRQEIL  416
            KS+SRV ++V    H   A+A R+L +  EE + +I +G YRPG++   D A+Q R+ + 
Sbjct  345  KSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLK  404

Query  417  DFIRQDQKSFIDLDTSAAAL  436
              + Q    +  +D + +++
Sbjct  405  AWLCQPVAQYSSFDDTLSGM  424

858) fliI in NC_015554


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  196 bits (726),  Expect = 3e-51, Method: Compositional matrix adjust.
 Identities = 166/383 (44%), Positives = 254/383 (67%), Gaps = 6/383 (1%)

Query  59   AEVVGFGADITYLMPTEAVRGIVPGSRVMPLNRQSGLAVGMGLLGRVVDGNGNPLDGLG-  117
            A+VVG+  + T L      +G+  +  + P  R  +  VG ++LG V+D  G+ ++ +  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTP  108

Query  118  EIK--TETRVPTTRPPINPLIRRAITQPMDVGVRAINALNTVGVGQRMGLFAGSGVGKSV  175
            E+   +E RV    PP  +  R ++ +P+  GVRAI++L T GVGQRMG+FA++G GK++
Sbjct  109  EVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  176  LLGMMTRGCEADvvvvglvgergrevKEFIHDILTeeeraravvvaaPADTSPLMRLKGC  235
            L+ M+    EADV V+GL+GERGREV EF++ + + + + + V+V A +D +++ R ++ 
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  236  ETAVTIAEYFRDQGLKVLLLIDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALVE  295
            + A T+AEYFRDQG +V+L+IDS+TRYA A R++ALA GE PA +GYP+SVF  LP L+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  296  RAGNGSEKQGSITAFYTVLTEGDDLQDPIADAARAILDGHVVLSRTLADSGHYPAIDIEA  355
            R+G  SE  GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR LA+ GHYPAID+  
Sbjct  288  RPGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  356  SISRVMPMVVSDEHQQMARRVRQVYSNYKQNQDLISIGAYAKGSDPRIDLAIRAEPAINA  415
            S+SRV   V +  H + A  VR++ +   + Q +I +G Y  G +   D A++   +++A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  416  FLQQGMKNVLPYDECLEGMAALA  438
             L Q + +  ++D+ L GM A+A
Sbjct  406  WLCQPVAQYSSFDDTLSGMNAFA  428

859) fliI in NC_015717


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  196 bits (728),  Expect = 3e-51, Method: Compositional matrix adjust.
 Identities = 144/353 (41%), Positives = 238/353 (68%), Gaps = 27/353 (7%)

Query  107  SWLGRTVNALGEPIDDAGPLV----------RGERAYAVQGSPPSPLRRNRLGTPLTTGV  156
            +W+G +V  LG  +D +G +V            ER   ++ +PPS   R  +  PL TGV
Sbjct  85   AWVGYSV--LGAVLDPTGKIVERFTPEVAPISEERV--IDVAPPSYASRVGVREPLITGV  140

Query  157  KAID-LFTPICA-GQRIGIFAGSGVGKSTLLAMLSRAPSSDVTVLALVGERSREVRDFLD  214
            +AID L+T  C+ GQR+GIFA++G GK+ L+ ML     +DV V++L+GER+REV +F+D
Sbjct  141  RAIDGLLT--CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVD  198

Query  215  DTLGATRSQ-VVSVVATSDESPMMRRLAPSAAMCIAEYYRDRGKTVLLIIDSLTRYAHAM  273
               ++ + +  V V ATSD +++ R  A+  A  +AEY+RD+GK V+L+IDS+TRYA+A+
Sbjct  199  MLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARAL  258

Query  274  RELALAADEPPVARGYPPSVFSNLPRLLERAGPGEAGAGTITAILSVLVDGDDHNDPIAD  333
            R++ALA++E P  RGYP+SVF NLPRLLER  PG ++ G+ITA+ +VL++++++ DP+AD
Sbjct  259  RDVALASGERPARRGYPASVFDNLPRLLER--PGATSEGSITAFYTVLLESEEEADPMAD  316

Query  334  ATRGILDGHIVLDRSIASQGRLPALDPLASLSRLAPKIRTKNQTQFVTQLIEVISRYEDT  393
              R+ILDGH+ L R +A+QG+ PA+D L S+SR+  ++ T  +++  + +  +++R E+ 
Sbjct  317  EIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEEL  376

Query  394  RDLRAIGGYKAGSDLTLDKAMEIVPRVYDAMKQSLDEDPVDDVYTYLSQVLQG  446
            + +  +G Y++G ++  D+AM++     D++K  L + PV + Y+ + + L G
Sbjct  377  QLFIDLGEYRPGENIDNDRAMQMR----DSLKAWLCQ-PVAQ-YSSFDDTLSG  423

860) Sphch_2648 in NC_015593


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  194 bits (722),  Expect = 7e-51, Method: Compositional matrix adjust.
 Identities = 155/380 (41%), Positives = 257/380 (68%), Gaps = 7/380 (1%)

Query  61   RAEVVGFRGGRTLLVPLDADAPLENGARVEPDSQATMVQVGDGLIGRVIDAMGQPLDRKG  120
            RA+VVG++  RT+L  ++    L  +  + P ++A    VG +++G V+D+ G+ ++R  
Sbjct  48   RAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFT  107

Query  121  PIIA--GGSWPLNGVKGNVLDRGRVTEPFDLGVRAVNALLTAGRGQRIAIIAGSGVGKSV  178
            P +A  +  + ++    +   R  V EP+  GVRA+++LLT G GQR++I+A++G GK++
Sbjct  108  PEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  179  LMGQMIQGAEADIVVAGLIGERGREVSDFLETKLKGA--MHKSIVVAVPADHPPVLrlra  236
            LM  +I+ +EAD+ V GLIGERGREV++F++  L+++   +K ++V   +D P+V R  A
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVD-MLRASHKKEKCVLVFATSDFPSVDRCNA  226

Query  237  aarataiaeyfraRGKKVLLLIDSLTRCAHAQREIGLALGEPPAMKGYPPSALALIPRLV  296
            A  AT++AEYFR +GK+V+L+IDS+TR A+A R+++LA GE PA +GYP+S +  +PRL+
Sbjct  227  AQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLL  286

Query  297  ERAGVDTRSGGSITALYTVLADGDDTDDPIVDAARAIVDGHFVLSRHLSEQAIFPAIDVG  356
            ER+G  + S GSITA+YTVL ++++  DP+ D  R+I+DGH+ LSR L+ Q+ +PAIDV 
Sbjct  287  ERPG--ATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVL  344

Query  357  KSLSRVMADVVPDEHRMaaaayrrlwaayEENRDLILMGAYRPGNDPVIDEAVQRRQEIL  416
            KS+SRV ++V    H   A+A R+L +  EE + +I +G YRPG++   D A+Q R+ + 
Sbjct  345  KSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLK  404

Query  417  DFIRQDQKSFIDLDTSANAL  436
              + Q    +  +D + +++
Sbjct  405  AWLCQPVAQYSSFDDTLSGM  424

861) fliI in NC_014803


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  192 bits (713),  Expect = 4e-50, Method: Compositional matrix adjust.
 Identities = 149/337 (45%), Positives = 237/337 (71%), Gaps = 8/337 (2%)

Query  100  VGMSLLGRVVDGLGRPLD----GLGKINAEHTLKFAQNAINPLARRPISKPMDVGVRAIN  155
            VG S+LG V+D  G+ ++     ++ I+ E+ +  A  +    +R  +  P+  GVRAI+
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA--SRVGVREPLITGVRAID  144

Query  156  SVITVGQGQRMGLFAGSGVGKSVLLGMMTRGSEADvivvglvgergrevkeFIEEILGVE  215
            +++T G GQRMG+FA++G GK++L+ M+   +EADV+V+GL+GERGREV EF++ + + +
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  216  GRKRsvvvaapadaspLMRLKGCESAVTIAEYFRDQGLNVLLLLDSVTRYAMAQREIALA  275
             + + V+V A +D +++ R ++ + A T+AEYFRDQG  V+L++DS+TRYA A R++ALA
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  276  VGEPPATKGYPPSVFAKLPALVERAGNGGEGQGSITAFFTVLSEGDDMQDPIADAARAIL  335
             GE PA +GYP+SVF +LP L+ER+G  +E  GSITAF+TVL E+++  DP+AD  R+IL
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSE--GSITAFYTVLLESEEEADPMADEIRSIL  322

Query  336  DGHIVLSRDLADSGHYPAIDIEKSISRVMPQVVSESHMQQARVLKQVYSMYQQNKDMITL  395
            DGH+ LSR LA+ GHYPAID+ KS+SRV  QV + +H +QA  ++++ +  ++ +  I L
Sbjct  323  DGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDL  382

Query  396  GAYQKGSDQMLDQAINMMPRVNAFLQQGMRDVISYDD  432
            G Y+ G +   D+A++M   ++A L Q + +  S+DD
Sbjct  383  GEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFDD  419

862) fliI in NC_005085


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  190 bits (705),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 164/402 (41%), Positives = 257/402 (64%), Gaps = 28/402 (6%)

Query  52   GWLQ------AQVVGFRREVSFLMPFKKPVGLATGARVLPAPDNGGLMIGDGWLGRIVNG  105
            GW Q      AQVVG++RE + L  + ++ GL+ +  V+  P   +L    +W+G  V  
Sbjct  39   GWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRD--VVLYPTGRAL---SAWVGYSV--  91

Query  106  LGEPLDGKGRL-----------GGDAPLAAHPPQINPLKKKPVDTPLDVGVRAINGFLTM  154
            LG  LD  G++           + +  +   PP   +  +  V  PL  GVRAI+G+LT 
Sbjct  92   LGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS--RVGVREPLITGVRAIDGLLTC  149

Query  155  GRGQRVGLFAGSGVGKSVLLGMITRHTEAEVVVVGLIgergrevrefveHALGAEGLAKA  214
            G GQR+G+FA++G GK++L+ M+  +TEA+V V+GLIGERGREV EFV+   +++   K 
Sbjct  150  GVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKC  209

Query  215  VLVVAPADESPLMRLKATELCHTIAAHYRDRGRNVLLLVDSLTRYAMAQREVALALGEPP  274
            VLV A +D +++ R +A++L  T+A  +RD+G+ V+L++DS+TRYA A R+VALA GE P
Sbjct  210  VLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERP  269

Query  275  ATRGYPPSVFGLLPslaesagngeggagsmsaIYTVLAEGDDQQDPVVDTARAILDGHIV  334
            A RGYP+SVF+ LP        G  + GS++A+YTVL E++++ DP+ D  R+ILDGH+ 
Sbjct  270  ARRGYPASVFDNLP--RLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLY  327

Query  335  LSRELAERGHYPAIDISRSVSRCMSQLIDADHAAVARELRGAWSRYQEVRGLLPLGAYVP  394
            LSR LA +GHYPAID+ +SVSR  +Q+  + HA  A  +R   +R +E++ ++ LG Y P
Sbjct  328  LSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRP  387

Query  395  GADPATDRALRLQPRIEALLCQDAGEAAPYAECLSRLQELAS  436
            G +   DRA++++  + A LCQ  ++ +++ + LS ++ +A 
Sbjct  388  GENIDNDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFAD  429

863) fliI in NC_017080


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  188 bits (699),  Expect = 5e-49, Method: Compositional matrix adjust.
 Identities = 160/366 (44%), Positives = 243/366 (67%), Gaps = 11/366 (3%)

Query  56   AEAVGFEGGRAVLLPLAEADGLRPGDPAHAEQASAAATFPVGGCLLGRVLDALGRPID--  113
            A+ VG++  R+VL  +++A+GL  +    +   + +A   VG  +LG VLD+ G+ ++  
Sbjct  49   AQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAW--VGYSVLGAVLDPTGKIVERF  106

Query  114  --GRGPLRGWTPRALEAPPPGACGRALIGQPLATGVRAIDGLMPLGRGQRMGIFAPPGVG  171
                +P+     R ++ +PP+  +R  + +PL TGVRAIDGL+  G GQRMGIFA++G G
Sbjct  107  TPEVAPISE--ERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCG  164

Query  172  KSTLLAACARGCAADvvvvglvgergrevNEFVERTLGPEGLARSVVVVATGDEPAPMrl  231
            K+ L+        ADV V+GL+GERGREV EFV+   +++   + V+V AT+D P+  R 
Sbjct  165  KTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRC  224

Query  232  raaraaTCVAEHFRDGGADVLLLMDSVTRFAQAQRQVGLAAGEPPATRGFPPSVFAALPR  291
             AA+ AT VAE FRD G  V+L++DS+TR+A+A R+V+LA+GE PA RG+P+SVF  LPR
Sbjct  225  NAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPR  284

Query  292  LLERAGPGAGGVGSITALYAVLVEGEEAGADPVSEACRGVLDGHLMLDRKLAERGHHPAI  351
            LLER  PGA + GSITA+Y+VL+E+EE  ADP+++  R++LDGHL L RKLA +GH PAI
Sbjct  285  LLER--PGATSEGSITAFYTVLLESEEE-ADPMADEIRSILDGHLYLSRKLAGQGHYPAI  341

Query  352  DCCASISRVAPHVVDAEHDaarlevlrllaahrDVEDLVAVGAYAAGSRPEADRAIAMKP  411
            D   S+SRV  +V  + H      V +L++   +++ ++ +G Y +G   + DRA+ M+ 
Sbjct  342  DVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRD  401

Query  412  AMDTFL  417
            ++ + L
Sbjct  402  SLKAWL  407

864) fliI in NC_014171


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  188 bits (696),  Expect = 6e-49, Method: Compositional matrix adjust.
 Identities = 124/305 (41%), Positives = 205/305 (68%), Gaps = 7/305 (2%)

Query  29   GNHLLGKVLSANGEVLN---EEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSM  85
            G  +LG VL + G +++    E   I+ +++   APP  A  R  + + + TG+++ID++
Sbjct  88   GYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGL  146

Query  86   LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGM  145
            LT G+GQ++GIFA++G GK+ L+ M+  ++ AD+ VI+L+GERGREV +F+    + +  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  146  RKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVK  205
             K V+V ATSD + + +  AA+LAT++AEYFRDQG+ V+L +DS+TR+A A R V +A  
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  206  ELPIGGKTLLMESY--MKKLLERSGKTQKGSITGIYTVLVDGDDLNGPVPDLARGILDGH  263
            E P + +      +  + +LLER+G T  GSIT++YTVL+++++  +P++D  R+ILDGH
Sbjct  267  ERP-ARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  264  IVLKRELATLSHYPAISVLDSVSRIMEEIVSPHHWQLANEMRKILSIYKENELYFKLGTI  323
            + L R LA  +HYPAI VL SVSR+  ++ +P H + A+ +RK+++   E +L++ LG  
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  324  QENEE  328
            +  E+
Sbjct  386  RPGEN  390

865) Afer_0140 in NC_013124


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  188 bits (696),  Expect = 8e-49, Method: Compositional matrix adjust.
 Identities = 133/315 (43%), Positives = 222/315 (71%), Gaps = 6/315 (1%)

Query  93   VGRALLGRVIDADGVPID----GQGPVEPDDVVGLELAAPMPMERTLIDEQLGLGVRVLD  148
            VG ++LG V+D+ G  ++      +P+  + V+  ++A+P    R  + E L  GVR +D
Sbjct  87   VGYSVLGAVLDPTGKIVERFTPEVAPISEERVI--DVAPPSYASRVGVREPLITGVRAID  144

Query  149  TMVPCGVGQRLGVFAGAGVGKSSLLSMvvrgadvdvrvvalvgERGREVREFLEHDLGPE  208
             ++ CGVGQR+G+FA+AG GK+ L+ M++  ++ DV V++L+GERGREV EF++   +++
Sbjct  145  GLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASH  204

Query  209  GMARSVVVVATSDEPPLvrvraaiaatriaEWFRASGARVLLVMDSLTRLALAQRELGLS  268
               + V+V ATSD P++ R  AA  AT +AE FR  G RV+L +DS+TR A A R+++L+
Sbjct  205  KKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA  264

Query  269  AGEPPSVRGYPPSVFRLMAQLLERAGTDHVGSITGIYSVLVEGDDLDDPIADAARSVLDG  328
            +GE P+ RGYP+SVF  +++LLER+G+   GSIT++Y+VL+E+++  DP+AD  RS+LDG
Sbjct  265  SGERPARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDG  324

Query  329  HIVLSRQLANRGRYPAVDVLASLSRLESSILPDDRRRLMQAARRHLAVLDEVRDLVDLGA  388
            H+ LSR+LA +G+YPA+DVL S+SR+ + +    +     A R+ ++ L+E++ ++DLG 
Sbjct  325  HLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGE  384

Query  389  YQAGTSMEVDEALEV  403
            Y++G +++ D A+++
Sbjct  385  YRPGENIDNDRAMQM  399

866) XC_2263 in NC_007086


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  187 bits (694),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 135/325 (42%), Positives = 219/325 (68%), Gaps = 4/325 (1%)

Query  133  GPIRAEGSVGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQRVGLFAGSGVGKSTL  192
            +PI  E  +++A  S    +R  +  +L  GVRAI+++L  G GQR+G+FA++G GK+ L
Sbjct  111  APISEERVIDVAPPSYA--SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTML  168

Query  193  LGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaapadrpplarlHGAY  252
            + M+   T ADV+V+GLIGERGREV +FV+   + +   + V+V A +D P++ R ++A 
Sbjct  169  MHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQ  228

Query  253  RATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYPPSVFAKLPALVER  312
             AT++AE FRDQG  V+L++DS+TR+A+A R+++L+ GE P+ RGYP+SVF +LP L+ER
Sbjct  229  LATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLER  288

Query  313  AGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVADSGLYPAIDLESS  372
            +G  +   GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR++A+ G YPAID+  S
Sbjct  289  PGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKS  346

Query  373  VSRVVQDIANDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPATDEALARWPEIVDF  432
            VSRV  +++  T   +   +++L++     + +I +G Y+ G +   D A+  +  +   
Sbjct  347  VSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAW  406

Query  433  LGQDVHKASDLTDSLSALQRLVEPE  457
            L Q V + S + D+LS+++ + + +
Sbjct  407  LCQPVAQYSSFDDTLSGMNAFADQN  431

867) fliI in NC_003902


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  187 bits (694),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 135/325 (42%), Positives = 219/325 (68%), Gaps = 4/325 (1%)

Query  133  GPIRAEGSVGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQRVGLFAGSGVGKSTL  192
            +PI  E  +++A  S    +R  +  +L  GVRAI+++L  G GQR+G+FA++G GK+ L
Sbjct  111  APISEERVIDVAPPSYA--SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTML  168

Query  193  LGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaapadrpplarlHGAY  252
            + M+   T ADV+V+GLIGERGREV +FV+   + +   + V+V A +D P++ R ++A 
Sbjct  169  MHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQ  228

Query  253  RATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYPPSVFAKLPALVER  312
             AT++AE FRDQG  V+L++DS+TR+A+A R+++L+ GE P+ RGYP+SVF +LP L+ER
Sbjct  229  LATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLER  288

Query  313  AGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVADSGLYPAIDLESS  372
            +G  +   GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR++A+ G YPAID+  S
Sbjct  289  PGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKS  346

Query  373  VSRVVQDIANDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPATDEALARWPEIVDF  432
            VSRV  +++  T   +   +++L++     + +I +G Y+ G +   D A+  +  +   
Sbjct  347  VSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAW  406

Query  433  LGQDVHKASDLTDSLSALQRLVEPE  457
            L Q V + S + D+LS+++ + + +
Sbjct  407  LCQPVAQYSSFDDTLSGMNAFADQN  431

868) Zmob_1156 in NC_017262


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  187 bits (693),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 151/364 (42%), Positives = 249/364 (69%), Gaps = 14/364 (3%)

Query  60   SRAEVVGFRGNTTLLMALDADAPHNPGARVEP-DRQLSIVHVGDGLLGRVIGALGEPLDN  118
            +RA+VVG++ + T+L  ++     + +  + P +R LS   VG ++LG V+++ G  ++ 
Sbjct  47   ARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALS-AWVGYSVLGAVLDPTGKIVER  105

Query  119  LGPIITDEYWPL----VGKMGNPLNRGRVT--QPFDMGVRAINALLTAGVGQRIAIMAGS  172
            + P ++    P+    V  ++ P   +RV   +P+  GVRAI++LLT GVGQR++I A++
Sbjct  106  FTPEVA----PISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASA  161

Query  173  GVGKSVLMGQMIAGAKADVIVTGLIGERSREVTDFVETKISDDVRPKSvvvavpadhppv  232
            G GK++LM  +I  + ADV+V GLIGER+REVT+FV+   + + + K V+V   +D P+V
Sbjct  162  GCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSV  221

Query  233  LRLRAAMRATAIAEYFRAKGKNVLLLIDSLTRIAHAQREVGLSLGEPPTIKGYPPSALGL  292
             R  AA  AT++AEYFR +GK V+L+IDS+TR A+A R+V+L+ GE P+ +GYP+S ++ 
Sbjct  222  DRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDN  281

Query  293  IPRLVERAGIDIHSKGAITAIYTVLAdgddpddpivdTARAIVDGHIILSRSLAEQGVFP  352
            +PRL+ER+G    S G+ITA+YTVL ++++  DP+ D  R+I+DGH+ LSR LA QG +P
Sbjct  282  LPRLLERPGAT--SEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYP  339

Query  353  AIDLGKSLSRVMSDIISPGHRQAAAHLRRLWSVYEENRDLILMGAYRSGTDASIDEAINR  412
            AID+ KS+SRV +++ +P H + A+ +R+L +  EE + +I +G YR+G +   D A++ 
Sbjct  340  AIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQM  399

Query  413  HNDV  416
            ++ +
Sbjct  400  RDSL  403

869) Za10_0626 in NC_013355


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  187 bits (693),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 151/364 (42%), Positives = 249/364 (69%), Gaps = 14/364 (3%)

Query  60   SRAEVVGFRGNTTLLMALDADAPHNPGARVEP-DRQLSIVHVGDGLLGRVIGALGEPLDN  118
            +RA+VVG++ + T+L  ++     + +  + P +R LS   VG ++LG V+++ G  ++ 
Sbjct  47   ARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALS-AWVGYSVLGAVLDPTGKIVER  105

Query  119  LGPIITDEYWPL----VGKMGNPLNRGRVT--QPFDMGVRAINALLTAGVGQRIAIMAGS  172
            + P ++    P+    V  ++ P   +RV   +P+  GVRAI++LLT GVGQR++I A++
Sbjct  106  FTPEVA----PISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASA  161

Query  173  GVGKSVLMGQMIAGAKADVIVTGLIGERSREVTDFVETKISDDVRPKSvvvavpadhppv  232
            G GK++LM  +I  + ADV+V GLIGER+REVT+FV+   + + + K V+V   +D P+V
Sbjct  162  GCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSV  221

Query  233  LRLRAAMRATAIAEYFRAKGKNVLLLIDSLTRIAHAQREVGLSLGEPPTIKGYPPSALGL  292
             R  AA  AT++AEYFR +GK V+L+IDS+TR A+A R+V+L+ GE P+ +GYP+S ++ 
Sbjct  222  DRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDN  281

Query  293  IPRLVERAGIDIHSKGAITAIYTVLAdgddpddpivdTARAIVDGHIILSRSLAEQGVFP  352
            +PRL+ER+G    S G+ITA+YTVL ++++  DP+ D  R+I+DGH+ LSR LA QG +P
Sbjct  282  LPRLLERPGAT--SEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYP  339

Query  353  AIDLGKSLSRVMSDIISPGHRQAAAHLRRLWSVYEENRDLILMGAYRSGTDASIDEAINR  412
            AID+ KS+SRV +++ +P H + A+ +R+L +  EE + +I +G YR+G +   D A++ 
Sbjct  340  AIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQM  399

Query  413  HNDV  416
            ++ +
Sbjct  400  RDSL  403

870) ZMO0637 in NC_006526


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  187 bits (693),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 151/364 (42%), Positives = 249/364 (69%), Gaps = 14/364 (3%)

Query  60   SRAEVVGFRGNTTLLMALDADAPHNPGARVEP-DRQLSIVHVGDGLLGRVIGALGEPLDN  118
            +RA+VVG++ + T+L  ++     + +  + P +R LS   VG ++LG V+++ G  ++ 
Sbjct  47   ARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALS-AWVGYSVLGAVLDPTGKIVER  105

Query  119  LGPIITDEYWPL----VGKMGNPLNRGRVT--QPFDMGVRAINALLTAGVGQRIAIMAGS  172
            + P ++    P+    V  ++ P   +RV   +P+  GVRAI++LLT GVGQR++I A++
Sbjct  106  FTPEVA----PISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASA  161

Query  173  GVGKSVLMGQMIAGAKADVIVTGLIGERSREVTDFVETKISDDVRPKSvvvavpadhppv  232
            G GK++LM  +I  + ADV+V GLIGER+REVT+FV+   + + + K V+V   +D P+V
Sbjct  162  GCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSV  221

Query  233  LRLRAAMRATAIAEYFRAKGKNVLLLIDSLTRIAHAQREVGLSLGEPPTIKGYPPSALGL  292
             R  AA  AT++AEYFR +GK V+L+IDS+TR A+A R+V+L+ GE P+ +GYP+S ++ 
Sbjct  222  DRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDN  281

Query  293  IPRLVERAGIDIHSKGAITAIYTVLAdgddpddpivdTARAIVDGHIILSRSLAEQGVFP  352
            +PRL+ER+G    S G+ITA+YTVL ++++  DP+ D  R+I+DGH+ LSR LA QG +P
Sbjct  282  LPRLLERPGAT--SEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYP  339

Query  353  AIDLGKSLSRVMSDIISPGHRQAAAHLRRLWSVYEENRDLILMGAYRSGTDASIDEAINR  412
            AID+ KS+SRV +++ +P H + A+ +R+L +  EE + +I +G YR+G +   D A++ 
Sbjct  340  AIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQM  399

Query  413  HNDV  416
            ++ +
Sbjct  400  RDSL  403

871) fliI in NC_018877


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  187 bits (694),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 124/305 (41%), Positives = 205/305 (68%), Gaps = 7/305 (2%)

Query  96   GNHLLGKVLSANGEVLN---EEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSM  152
            G  +LG VL + G +++    E   I+ +++   APP  A  R  + + + TG+++ID++
Sbjct  88   GYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGL  146

Query  153  LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGM  212
            LT G+GQ++GIFA++G GK+ L+ M+  ++ AD+ VI+L+GERGREV +F+    + +  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  213  RKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVK  272
             K V+V ATSD + + +  AA+LAT++AEYFRDQG+ V+L +DS+TR+A A R V +A  
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  273  ELPIGGKTLLMESY--MKKLLERSGKTQKGSITGIYTVLVDGDDLNGPVPDLARGILDGH  330
            E P + +      +  + +LLER+G T  GSIT++YTVL+++++  +P++D  R+ILDGH
Sbjct  267  ERP-ARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  331  IVLKRELATLSHYPAISVLDSVSRIMEEIVSPHHWQLANEMRKILSIYKENELYFKLGTI  390
            + L R LA  +HYPAI VL SVSR+  ++ +P H + A+ +RK+++   E +L++ LG  
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  391  QENEE  395
            +  E+
Sbjct  386  RPGEN  390

872) fliI in NC_018500


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  187 bits (695),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 124/305 (41%), Positives = 205/305 (68%), Gaps = 7/305 (2%)

Query  96   GNHLLGKVLSANGEVLN---EEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSM  152
            G  +LG VL + G +++    E   I+ +++   APP  A  R  + + + TG+++ID++
Sbjct  88   GYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGL  146

Query  153  LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGM  212
            LT G+GQ++GIFA++G GK+ L+ M+  ++ AD+ VI+L+GERGREV +F+    + +  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  213  RKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVK  272
             K V+V ATSD + + +  AA+LAT++AEYFRDQG+ V+L +DS+TR+A A R V +A  
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  273  ELPIGGKTLLMESY--MKKLLERSGKTQKGSITGIYTVLVDGDDLNGPVPDLARGILDGH  330
            E P + +      +  + +LLER+G T  GSIT++YTVL+++++  +P++D  R+ILDGH
Sbjct  267  ERP-ARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  331  IVLKRELATLSHYPAISVLDSVSRIMEEIVSPHHWQLANEMRKILSIYKENELYFKLGTI  390
            + L R LA  +HYPAI VL SVSR+  ++ +P H + A+ +RK+++   E +L++ LG  
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  391  QENEE  395
            +  E+
Sbjct  386  RPGEN  390

873) fliI in NC_017208


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  187 bits (694),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 124/305 (41%), Positives = 205/305 (68%), Gaps = 7/305 (2%)

Query  96   GNHLLGKVLSANGEVLN---EEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSM  152
            G  +LG VL + G +++    E   I+ +++   APP  A  R  + + + TG+++ID++
Sbjct  88   GYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGL  146

Query  153  LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGM  212
            LT G+GQ++GIFA++G GK+ L+ M+  ++ AD+ VI+L+GERGREV +F+    + +  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  213  RKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVK  272
             K V+V ATSD + + +  AA+LAT++AEYFRDQG+ V+L +DS+TR+A A R V +A  
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  273  ELPIGGKTLLMESY--MKKLLERSGKTQKGSITGIYTVLVDGDDLNGPVPDLARGILDGH  330
            E P + +      +  + +LLER+G T  GSIT++YTVL+++++  +P++D  R+ILDGH
Sbjct  267  ERP-ARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  331  IVLKRELATLSHYPAISVLDSVSRIMEEIVSPHHWQLANEMRKILSIYKENELYFKLGTI  390
            + L R LA  +HYPAI VL SVSR+  ++ +P H + A+ +RK+++   E +L++ LG  
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  391  QENEE  395
            +  E+
Sbjct  386  RPGEN  390

874) H175_ch1597 in NC_020376


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  187 bits (694),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 124/305 (41%), Positives = 205/305 (68%), Gaps = 7/305 (2%)

Query  96   GNHLLGKVLSANGEVLN---EEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSM  152
            G  +LG VL + G +++    E   I+ +++   APP  A  R  + + + TG+++ID++
Sbjct  88   GYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYA-SRVGVREPLITGVRAIDGL  146

Query  153  LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGM  212
            LT G+GQ++GIFA++G GK+ L+ M+  ++ AD+ VI+L+GERGREV +F+    + +  
Sbjct  147  LTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKK  206

Query  213  RKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVK  272
             K V+V ATSD + + +  AA+LAT++AEYFRDQG+ V+L +DS+TR+A A R V +A  
Sbjct  207  EKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASG  266

Query  273  ELPIGGKTLLMESY--MKKLLERSGKTQKGSITGIYTVLVDGDDLNGPVPDLARGILDGH  330
            E P + +      +  + +LLER+G T  GSIT++YTVL+++++  +P++D  R+ILDGH
Sbjct  267  ERP-ARRGYPASVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGH  325

Query  331  IVLKRELATLSHYPAISVLDSVSRIMEEIVSPHHWQLANEMRKILSIYKENELYFKLGTI  390
            + L R LA  +HYPAI VL SVSR+  ++ +P H + A+ +RK+++   E +L++ LG  
Sbjct  326  LYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEY  385

Query  391  QENEE  395
            +  E+
Sbjct  386  RPGEN  390

875) XCR_2191 in NC_017271


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  187 bits (692),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 135/325 (42%), Positives = 219/325 (68%), Gaps = 4/325 (1%)

Query  133  GPIRAEGSVGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQRVGLFAGSGVGKSTL  192
            +PI  E  +++A  S    +R  +  +L  GVRAI+++L  G GQR+G+FA++G GK+ L
Sbjct  111  APISEERVIDVAPPSYA--SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTML  168

Query  193  LGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaapadrpplarlHGAY  252
            + M+   T ADV+V+GLIGERGREV +FV+   + +   + V+V A +D P++ R ++A 
Sbjct  169  MHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQ  228

Query  253  RATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYPPSVFAKLPALVER  312
             AT++AE FRDQG  V+L++DS+TR+A+A R+++L+ GE P+ RGYP+SVF +LP L+ER
Sbjct  229  LATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLER  288

Query  313  AGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVADSGLYPAIDLESS  372
            +G  +   GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR++A+ G YPAID+  S
Sbjct  289  PGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKS  346

Query  373  VSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPATDEALARWPEIVDF  432
            VSRV  +++  T   +   +++L++     + +I +G Y+ G +   D A+  +  +   
Sbjct  347  VSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAW  406

Query  433  LGQDVHKASDLTDSLSALQRLVEPE  457
            L Q V + S + D+LS+++ + + +
Sbjct  407  LCQPVAQYSSFDDTLSGMNAFADQN  431

876) xccb100_2220 in NC_010688


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  187 bits (692),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 135/325 (42%), Positives = 219/325 (68%), Gaps = 4/325 (1%)

Query  133  GPIRAEGSVGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQRVGLFAGSGVGKSTL  192
            +PI  E  +++A  S    +R  +  +L  GVRAI+++L  G GQR+G+FA++G GK+ L
Sbjct  111  APISEERVIDVAPPSYA--SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTML  168

Query  193  LGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaapadrpplarlHGAY  252
            + M+   T ADV+V+GLIGERGREV +FV+   + +   + V+V A +D P++ R ++A 
Sbjct  169  MHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQ  228

Query  253  RATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYPPSVFAKLPALVER  312
             AT++AE FRDQG  V+L++DS+TR+A+A R+++L+ GE P+ RGYP+SVF +LP L+ER
Sbjct  229  LATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLER  288

Query  313  AGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVADSGLYPAIDLESS  372
            +G  +   GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR++A+ G YPAID+  S
Sbjct  289  PGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKS  346

Query  373  VSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPATDEALARWPEIVDF  432
            VSRV  +++  T   +   +++L++     + +I +G Y+ G +   D A+  +  +   
Sbjct  347  VSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAW  406

Query  433  LGQDVHKASDLTDSLSALQRLVEPE  457
            L Q V + S + D+LS+++ + + +
Sbjct  407  LCQPVAQYSSFDDTLSGMNAFADQN  431

877) XOC_2349 in NC_017267


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  187 bits (692),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 135/325 (42%), Positives = 219/325 (68%), Gaps = 4/325 (1%)

Query  133  GPIRAEGSVGMAGVSINPLAREPITTSLDVGVRAINAMLPIGRGQRVGLFAGSGVGKSTL  192
            +PI  E  +++A  S    +R  +  +L  GVRAI+++L  G GQR+G+FA++G GK+ L
Sbjct  111  APISEERVIDVAPPSYA--SRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTML  168

Query  193  LGMMTRFTAADVIVVGLIGERGREVRDFVETTLGEEGlrravvvaapadrpplarlHGAY  252
            + M+   T ADV+V+GLIGERGREV +FV+   + +   + V+V A +D P++ R ++A 
Sbjct  169  MHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQ  228

Query  253  RATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYPPSVFAKLPALVER  312
             AT++AE FRDQG  V+L++DS+TR+A+A R+++L+ GE P+ RGYP+SVF +LP L+ER
Sbjct  229  LATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLER  288

Query  313  AGNGAKGRGSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVADSGLYPAIDLESS  372
            +G  +   GSITAFYTVL E+++  DP+AD  R+ILDGH+ LSR++A+ G YPAID+  S
Sbjct  289  PGATSE--GSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKS  346

Query  373  VSRVVQDIADDTWrlrirklkrllSAYTANRDLIAIGAYQRGSDPATDEALARWPEIVEF  432
            VSRV  +++  T   +   +++L++     + +I +G Y+ G +   D A+  +  +   
Sbjct  347  VSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAW  406

Query  433  LGQDVHKASVLSDSLSALQQLVEPE  457
            L Q V + S + D+LS+++ + + +
Sbjct  407  LCQPVAQYSSFDDTLSGMNAFADQN  431

878) G432_05920 in NC_020561


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  180 bits (666),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 150/364 (42%), Positives = 247/364 (68%), Gaps = 4/364 (1%)

Query  61   RAEVVGFRGNRTLMMALDSDAPHITGARVEPDSRGGSVAVGAELLGRVVDALGEPLDGLG  120
            RA+VVG++ +RT++  +++      +  + P +R+ S  VG  +LG V+D+ G  ++ + 
Sbjct  48   RAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFT  107

Query  121  PIAA--AHRWPLAGRPGNPLNRARVTEPFDMGVRAINALLTAGVGQRIAIAAGSGVGKSV  178
            P  A  ++ + +   P +  +R  V EP+  GVRAI++LLT GVGQR++I A++G GK++
Sbjct  108  PEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTM  167

Query  179  LMGQMIAGAECDVIVVGLVGERSREVSDFLATKLSGAVRQKSVVVAVPADHPPllrlraa  238
            LM  +I  +E DV+V+GL+GER+REV++F+    ++  ++K V+V   +D P++ R  AA
Sbjct  168  LMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA  227

Query  239  mrataiaEFFREAGLRVLLLIDSLTRVAHAQREIGLSLGEPPTMKGYPPSALGLIPRLIE  298
              AT++AE+FR+ G RV+L+IDS+TR A+A R+++L+ GE P+ +GYP+S ++ +PRL+E
Sbjct  228  QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE  287

Query  299  RAGADARTGGSITAIYtvladgddtddpvvdtaraIVDGHIILSRSLAEQGVFPAIDVGK  358
            R+GA   + GSITA+YTVL ++++  DP+ D  R+I+DGH+ LSR LA QG +PAIDV K
Sbjct  288  RPGAT--SEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK  345

Query  359  SLSRVMPDVVEPDHlraaanlrrlwaaYEENRDLILMGAYREGSDPRIDEAVMRQADIRA  418
            S+SRV  +V  P H   A+ +R+L +  EE + +I +G YR G +   D A+  +  ++A
Sbjct  346  SVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQMRDSLKA  405

Query  419  FISQ  422
             + Q
Sbjct  406  WLCQ  409

879) fliI in NC_014034


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  178 bits (658),  Expect = 8e-46, Method: Compositional matrix adjust.
 Identities = 129/321 (41%), Positives = 213/321 (67%), Gaps = 7/321 (2%)

Query  103  GRIVDPFGRPLDGRPLLRGGHDRNIratpppaafrrrLGERVETGLDAFNTLLPLVRGQR  162
            G+IV+ F   +   P+   +++R I  +PP+ A R  + E + TG+ A++ LL    GQR
Sbjct  100  GKIVERFTPEVA--PI---SEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQR  154

Query  163  IGLFAGSGVGKSSLLAKFAKGVAADVVVIALIGERGRELREFVEKTLGPEGMARSVIVAA  222
            +G+FA++G GK+ L+  +     ADV VI+LIGERGRE+ EFV+   +++   + V+V A
Sbjct  155  MGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFA  214

Query  223  TSDQSPLVRRRCGWAAMTVAEYFRDQGKHVLFLADSVTRFAEAHREVALAAGEPPSLRGY  282
            TSD +++ R   +  A TVAEYFRDQGK+V+++ DS+TR+A A R+VALA+GE P+ RGY
Sbjct  215  TSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGY  274

Query  283  PPSTSHQIMSLAERSGPGMEGAGDITAVFSVLVAGSDMEEPVADILRGTLDGHVVLDRGI  342
            P+S  +++  L ER  PG  + G ITA ++VL+ + +  +P+AD +R+ LDGH+ L R +
Sbjct  275  PASVFDNLPRLLER--PGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKL  332

Query  343  AERGRFPAIDLLRSVSRSLPEAATPAENELIAKARKLLGAYDRAEMMIQAGLYAAGSDPV  402
            A +G++PAID+L+SVSR + + +TP++ E  +  RKL+   +  ++ I+ G Y +G +  
Sbjct  333  AGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENID  392

Query  403  IDAAIKVWPALDGFLARDAAD  423
             D A++++ +L + L +  A+
Sbjct  393  NDRAMQMRDSLKAWLCQPVAQ  413

880) ZZ6_0639 in NC_018145


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  174 bits (643),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 151/364 (42%), Positives = 249/364 (69%), Gaps = 14/364 (3%)

Query  60   SRAEVVGFRGNTTLLMALDADAPHNPGARVEP-DRQLSIVHVGDGLLGRVIGALGEPLDN  118
            +RA+VVG++ + T+L  ++     + +  + P +R LS   VG ++LG V+++ G  ++ 
Sbjct  47   ARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALS-AWVGYSVLGAVLDPTGKIVER  105

Query  119  LGPIITDEYWPL----VGKMGNPLNRGRVT--QPFDMGVRAINALLTAGVGQRIAIMAGS  172
            + P ++    P+    V  ++ P   +RV   +P+  GVRAI++LLT GVGQR++I A++
Sbjct  106  FTPEVA----PISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASA  161

Query  173  GVGKSVLMGQMIAGAKADVIVTGLIGERSREVTDFVETKISDDVRPKSvvvavpadhppv  232
            G GK++LM  +I  + ADV+V GLIGER+REVT+FV+   + + + K V+V   +D P+V
Sbjct  162  GCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSV  221

Query  233  LRLRAAMRATAIAEYFRAKGKNVLLLIDSLTRIAHAQREVGLSLGEPPTIKGYPPSALGL  292
             R  AA  AT++AEYFR +GK V+L+IDS+TR A+A R+V+L+ GE P+ +GYP+S ++ 
Sbjct  222  DRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDN  281

Query  293  IPRLVERAGIDIHSKGAITAIYTVLAdgddpddpivdTARAIVDGHIILSRSLAEQGVFP  352
            +PRL+ER+G    S G+ITA+YTVL ++++  DP+ D  R+I+DGH+ LSR LA QG +P
Sbjct  282  LPRLLERPGAT--SEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYP  339

Query  353  AIDLGKSLSRVMSDIISPrhrqaaahlrrlWSVYEENRDLILMGAYRSGTDASIDEAINR  412
            AID+ KS+SRV +++ +P H + A+ +R+L +  EE + +I +G YR+G +   D A++ 
Sbjct  340  AIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQM  399

Query  413  HNDV  416
            ++ +
Sbjct  400  RDSL  403

881) fliI in NC_020549


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  172 bits (637),  Expect = 4e-44, Method: Compositional matrix adjust.
 Identities = 124/309 (41%), Positives = 205/309 (67%), Gaps = 6/309 (1%)

Query  103  GRVINALGKPIdgddslgkgdlsMEIMSKVPPA-MNRQRVEKGFKTGIRVIDIFTPLCH-  160
            G V+++ GK ++   +         ++   PP+  +R  V   + TG+R ID +   C  
Sbjct  93   GAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT-CGV  151

Query  161  GQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLK-KSVV  219
            GQR+G+FA++G GK+ L+ M+      D  +I+L+GERGREV EF++   + + K K V+
Sbjct  152  GQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVL  211

Query  220  VVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVA  279
            V ATSD +++ R  A+  A T+AEYF  +G  V+L++DS+TR+A+++R++A  SGE P  
Sbjct  212  VFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPAR  271

Query  280  RGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLN  339
            RGYP+SVF +LPRLLER  P+    G+ITA  +VL++++++ DP+AD +RSILDGH+ L+
Sbjct  272  RGYPASVFDNLPRLLER--PGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLS  329

Query  340  RSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGV  399
            R LA +G+YP++D L SVSR+ ++  ++ +    S++  L+ R+EE + +  +G YRPG 
Sbjct  330  RKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGE  389

Query  400  DLILDKAVH  408
            ++  D+A++
Sbjct  390  NIDNDRAMQ  398

882) fliI in NC_012985


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  172 bits (637),  Expect = 4e-44, Method: Compositional matrix adjust.
 Identities = 124/309 (41%), Positives = 205/309 (67%), Gaps = 6/309 (1%)

Query  103  GRVINALGKPIdgddslgkgdlsMEIMSKVPPA-MNRQRVEKGFKTGIRVIDIFTPLCH-  160
            G V+++ GK ++   +         ++   PP+  +R  V   + TG+R ID +   C  
Sbjct  93   GAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLT-CGV  151

Query  161  GQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLK-KSVV  219
            GQR+G+FA++G GK+ L+ M+      D  +I+L+GERGREV EF++   + + K K V+
Sbjct  152  GQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVL  211

Query  220  VVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVA  279
            V ATSD +++ R  A+  A T+AEYF  +G  V+L++DS+TR+A+++R++A  SGE P  
Sbjct  212  VFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPAR  271

Query  280  RGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLN  339
            RGYP+SVF +LPRLLER  P+    G+ITA  +VL++++++ DP+AD +RSILDGH+ L+
Sbjct  272  RGYPASVFDNLPRLLER--PGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLS  329

Query  340  RSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGV  399
            R LA +G+YP++D L SVSR+ ++  ++ +    S++  L+ R+EE + +  +G YRPG 
Sbjct  330  RKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGE  389

Query  400  DLILDKAVH  408
            ++  D+A++
Sbjct  390  NIDNDRAMQ  398

883) fliI in NC_015976


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  171 bits (634),  Expect = 6e-44, Method: Compositional matrix adjust.
 Identities = 143/350 (41%), Positives = 239/350 (69%), Gaps = 4/350 (1%)

Query  63   EVVGFRGSRAVLVPLDQDAPLENGARVEPDSAANMVQVGEGLIGRVVDAMGQPLDRKGPI  122
            +VVG++  R+VL  +++   L  +  + P + A    VG +++G V+D+ G+ ++R  P 
Sbjct  50   QVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPE  109

Query  123  LA--NGQWPLNGVRGNVLDRGRVTERFDLGVRAVNALLTAGRGQRIAIMAGSGVGKSVLM  180
            +A  + ++ ++    +   R  V E +  GVRA+++LLT G GQR++I A++G GK++LM
Sbjct  110  VAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLM  169

Query  181  GQMIGGAEADIIVVGLIGERGREVSDFLETKIGGALMGKSvvvavpadhppvLrlraaar  240
              +I  +EAD++V+GLIGERGREV++F++   ++    K V+V   +D P+V R  AA  
Sbjct  170  HMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQL  229

Query  241  ataiaeyfraRGKNVLLLIDSLTRCAHAQREIGLSLGEPPAMKGYPPSALAFIPRLVERA  300
            AT++AEYFR +GK V+L+IDS+TR A+A R+++L+ GE PA +GYP+S +  +PRL+ER+
Sbjct  230  ATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERP  289

Query  301  GVDSRSGGAITAIYTVLADGDDNDDPIVDTARAIVDGHIVLSRQLSEQSIFPAIDVGRSL  360
            G  + S G+ITA+YTVL +++++ DP+ D  R+I+DGH+ LSR+L+ Q+ +PAIDV +S+
Sbjct  290  G--ATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSV  347

Query  361  SRVMADIVDEQHlaaaanyrrlwaayEENRDLILMGAYRPGNDATIDEAV  410
            SRV +++    H   A+  R+L +  EE + +I +G YRPG++   D A+
Sbjct  348  SRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAM  397

884) PSE_2592 in NC_016642


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  168 bits (620),  Expect = 8e-43, Method: Compositional matrix adjust.
 Identities = 126/308 (41%), Positives = 213/308 (70%), Gaps = 9/308 (2%)

Query  104  GRIINAFGHPIDGLGSMAEGPTLASFNNLPPPPVHRARVKDAALTGVRVLDLFTPICHGQ  163
            G+I++ F   +   ++++E   +   +  PP+   R  V+++ +TGVR +D +     GQ
Sbjct  100  GKIVERFTPEV---APISEERVI---DVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQ  153

Query  164  RLGIFAGSGVGKSTLLSMIARSNSFDTVVIGLIgergrevre-fveeTLGDQLSKSVVVV  222
            R+GIFA++G GK+ L+ M+      D  VIGLIGERGREV E       +++  K V+V 
Sbjct  154  RMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVF  213

Query  223  ATGDESPMMRRLAPKTAMTVAEHFRDQGQSVLLIVDSVTRYAHALRDVALAAGEPALSRG  282
            AT+D +++ R  A++ A TVAE FRDQG+ V+L++DS+TRYA+ALRDVALA+GE +  RG
Sbjct  214  ATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRG  273

Query  283  YPPSVFSELPLLLERAGPGIEGSGMMTAIFSVLVDGDDHNDPVADNIRGLLDGHVVLDRH  342
            YP+SVF +LP LLER+G+  EGS  +TA+++VL++++++ DP+AD+IR++LDGH+ L R 
Sbjct  274  YPASVFDNLPRLLERPGATSEGS--ITAFYTVLLESEEEADPMADEIRSILDGHLYLSRK  331

Query  343  IAEEGRYPAVNVLGSISRLAQSCWSPQERELITKLKAMIAKFEDTKDLRMMGGYKEGVDP  402
            +A +G+YPA++VL S+SR+     +P + E  + ++ +++++E+ + +  +G Y+ G + 
Sbjct  332  LAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENI  391

Query  403  LLDQAIEI  410
              D+A+++
Sbjct  392  DNDRAMQM  399

885) A2cp1_2562 in NC_011891


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  165 bits (609),  Expect = 6e-42, Method: Compositional matrix adjust.
 Identities = 165/395 (42%), Positives = 264/395 (67%), Gaps = 8/395 (2%)

Query  27   RAAGLLVEALLPQVPVGTACEIH---AQDGAVVLAEVIGFQGGTARLMPLSGIQGVAEGC  83
            + +G ++EA L +V++G  CEI+    Q   V  A+V+G+Q   + L  ++  QG++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  84   AVVPRASADRIAVGEALLGRVVDASLRPVD--GGAVPMLRQRTALHASPPPALSRRRVER  141
             + P + A    VG ++LG V+D++ + V+     V+ + +   ++ +PP+  SR  V  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  142  AVPLGIRAIDACLTVGEGQRIAVMAGPGVGKSVLLGMLARSATADVVVVGLIgergrevr  201
            ++  G+RAID+ LT G GQR+++ A++G GK++L+ ML   + ADV V+GLIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  202  efver-DLGPGLARAVVVVATSDASPLERLRaamaataaaEWFrgrgrrvlllvdslsrv  260
            EFV+    +    + V+V ATSD ++++R  AA  AT+ AE FR++G+RV+L++DS++R 
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  261  AQAQREIGLAAGEPPTTRGYPPSAFAILPRLVERAGNDAGPGSITAFYTVLAEGDDHAGD  320
            A+A R+++LA+GE P+ RGYP+S F  LPRL+ER+G  ++ GSITAFYTVL E++++A D
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-TSEGSITAFYTVLLESEEEA-D  312

Query  321  PIADAARATLDGHLVLSRRLAESGHFPAIDVLASVSRVMNDIVPaehralareareVLSA  380
            P+AD  R+ LDGHL LSR+LA  GH+PAIDVL SVSRV  ++  + H   A   R +++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  381  HREAADLVEVGAYAAGSNPRVDRALRCIEPLRAFL  415
              E   ++++G Y +G N   DRA++  ++L+A L
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWL  407

886) AnaeK_2466 in NC_011145


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  165 bits (608),  Expect = 7e-42, Method: Compositional matrix adjust.
 Identities = 164/395 (42%), Positives = 264/395 (67%), Gaps = 8/395 (2%)

Query  27   RAAGLLVEALLPQVPVGTACEIH---AQDGAVVLAEVIGFQGGTARLMPLSGIQGVAEGC  83
            + +G ++EA L +V++G  CEI+    Q   V  A+V+G+Q   + L  ++  QG++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  84   AVVPRASADRIAVGEALLGRVVDASLRPVD--GGAVPMLRQRTALHASPPPALSRRRVER  141
             + P + A    VG ++LG V+D++ + V+     V+ + +   ++ +PP+  SR  V  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  142  AVPLGIRAVDACLTVGEGQRIAVMAGPGVGKSVLLGMLARSATADVVVVGLIgergrevr  201
            ++  G+RA+D+ LT G GQR+++ A++G GK++L+ ML   + ADV V+GLIGERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  202  efver-DLGPGLARAVVVVATSDASPLERLRaamaataaaEWFrgrgrrvlllvdslsrv  260
            EFV+    +    + V+V ATSD ++++R  AA  AT+ AE FR++G+RV+L++DS++R 
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  261  AQAQREIGLAAGEPPTTRGYPPSAFAILPRLVERAGNDAGPGSITAFYTVLAEGDDHAGD  320
            A+A R+++LA+GE P+ RGYP+S F  LPRL+ER+G  ++ GSITAFYTVL E++++A D
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-TSEGSITAFYTVLLESEEEA-D  312

Query  321  PIADAARATLDGHLVLSRRLAESGHFPAIDVLASVSRVMNDIVPaehralareareVLSA  380
            P+AD  R+ LDGHL LSR+LA  GH+PAIDVL SVSRV  ++  + H   A   R +++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  381  HREAADLVEVGAYAAGSNPRVDRALRCIEPLRAFL  415
              E   ++++G Y +G N   DRA++  ++L+A L
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWL  407

887) BMEII1105 in NC_003318


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  162 bits (598),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 128/316 (41%), Positives = 207/316 (66%), Gaps = 16/316 (5%)

Query  29   RPAPEWRGRVINALGNAIDGKGAL----KPGTRPMAAESL----APAALRRARVDRGLRT  80
            R+ + W G   + LG  +D  G +     P   P++ E +    +P+   R  V   L T
Sbjct  81   RALSAWVG--YSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVREPLIT  138

Query  81   GVNVIDIFTPLC-FGQRTGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVREML  139
            GV  ID +   C  GQR GIFA++G GK+ L+ M+   ++ D  V++L GERGREV E +
Sbjct  139  GVRAIDGLLT-CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFV  197

Query  140  EETMAGHL-GKTITVVATGDESPMMRRLAPNTATAIAEYFRDLGQNVLLIVDSVTRFaha  198
            +   A+H   K + V AT+D +++ R  A++ AT++AEYFRD G+ V+L++DS+TR+A+A
Sbjct  198  DMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARA  257

Query  199  arevaiaaeeppvarGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHNDPV  258
             R+VA+A+ E P  RGYP+SVF +LPRLLER+G+ S    GSIT++Y+VL++++++ DP+
Sbjct  258  LRDVALASGERPARRGYPASVFDNLPRLLERPGATSE---GSITAFYTVLLESEEEADPM  314

Query  259  SDTIRGTLDGHIVLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVARFE  318
            +D IR+ LDGH+ L R +A+QG++PA+D+  SVSR+  +  TP +      +R +++R+E
Sbjct  315  ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE  374

Query  319  ETRDLRAIGAYQKGHD  334
            E + +  +G Y+ G++
Sbjct  375  ELQLFIDLGEYRPGEN  390

888) Adeh_1391 in NC_007760


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  161 bits (593),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 168/401 (42%), Positives = 269/401 (68%), Gaps = 8/401 (1%)

Query  27   RAAGLLVEALLPQVPVGTACEIH---ARDGAVVLAEVIGFQGGTARLMPLSGIQGVAEGC  83
            + +G ++EA L +V++G  CEI+    +   V  A+V+G+Q   + L  ++  QG++ + 
Sbjct  15   KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV  74

Query  84   VVVPRASADRIPVDEALLGRVVDASLRPVD--GGPVPILRQRTALHAAPPPALSRRRVER  141
            V+ P + A    V+ ++LG V+D++ + V+     V+ + +   ++ APP+  SR  V  
Sbjct  75   VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE  134

Query  142  PVPLGIRAVDACLTVGEGQRVAVMAGPGVGKSVLLGMLARSATADvvvvglvgergrevr  201
            P+  G+RA+D+ LT G GQR+++ A++G GK++L+ ML   + ADV V+GL+GERGREV 
Sbjct  135  PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT  194

Query  202  efver-DLGPGLARAVVVVATSDASPLERLRaamaatavaEWFrgrgrrvlllvdslsrv  260
            EFV+    +    + V+V ATSD ++++R  AA  AT+VAE FR++G+RV+L++DS++R 
Sbjct  195  EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY  254

Query  261  AQAQREIGLAAGEPPTTRGYPPSAFAILPRLVERAGNDAGPGSITAFYTVLAEGDDHAGD  320
            A+A R+++LA+GE P+ RGYP+S F  LPRL+ER+G  ++ GSITAFYTVL E++++A D
Sbjct  255  ARALRDVALASGERPARRGYPASVFDNLPRLLERPGA-TSEGSITAFYTVLLESEEEA-D  312

Query  321  PIADAARATLDGHLVLSRRLAESGHFPAIDVLASVSRVMNDIVPPEHRALAREAREVLSA  380
            P+AD  R+ LDGHL LSR+LA  GH+PAIDVL SVSRV  ++  P H   A   R +++ 
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  381  HREAADLVEVGAYAAGSNPRVDRALRCIEPLRAFLRQDPAE  421
              E   ++++G Y +G N   DRA++  ++L+A L Q  A+
Sbjct  373  LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQ  413

889) fliI in NC_010104


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  159 bits (588),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 129/318 (41%), Positives = 209/318 (66%), Gaps = 20/318 (6%)

Query  102  RPAPEWRGRVINALGNAIDGKGALKLGTR------PMAAESL----APAALRRARVDRGL  151
            R+ + W G   + LG  +D  G  K+  R      P++ E +    +P+   R  V   L
Sbjct  81   RALSAWVG--YSVLGAVLDPTG--KIVERFTPEVAPISEERVIDVAPPSYASRVGVREPL  136

Query  152  RTGVNVIDIFTPLC-FGQRIGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVRE  210
             TGV  ID +   C  GQR+GIFA++G GK+ L+ M+   ++ D  V++L GERGREV E
Sbjct  137  ITGVRAIDGLLT-CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  211  MLEETMAGHL-GKTITVVATGDESPMMRRLAPNTATAIAEYFRDLGQNVLLIVDSVTRFa  269
             ++   A+H   K + V AT+D +++ R  A++ AT++AEYFRD G+ V+L++DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  270  haarevaiaaeeppvarGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHND  329
            +A R+VA+A+ E P  RGYP+SVF +LPRLLER+G+ S    GSIT++Y+VL++++++ D
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE---GSITAFYTVLLESEEEAD  312

Query  330  PVSDTIRGTLDGHIVLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVAR  389
            P++D IR+ LDGH+ L R +A+QG++PA+D+  SVSR+  +  TP +      +R +++R
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  390  FEETRDLRAIGAYQKGHD  407
            +EE + +  +G Y+ G++
Sbjct  373  LEELQLFIDLGEYRPGEN  390

890) BCA52141_II1030 in NC_016796


> NC_003198_P5|35|G35|16761671|NP_457288.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|29942..31237|spaI|-|secretory 
apparatus ATP synthase (associated with virulence)
Length=431

 Score =  159 bits (588),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 129/318 (41%), Positives = 209/318 (66%), Gaps = 20/318 (6%)

Query  102  RPAPEWRGRVINALGNAIDGKGALKLGTR------PMAAESL----APAALRRARVDRGL  151
            R+ + W G   + LG  +D  G  K+  R      P++ E +    +P+   R  V   L
Sbjct  81   RALSAWVG--YSVLGAVLDPTG--KIVERFTPEVAPISEERVIDVAPPSYASRVGVREPL  136

Query  152  RTGVNVIDIFTPLC-FGQRIGIFAGSGVGKSTLLAMMTRAADFDTVVLALTGERGREVRE  210
             TGV  ID +   C  GQR+GIFA++G GK+ L+ M+   ++ D  V++L GERGREV E
Sbjct  137  ITGVRAIDGLLT-CGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTE  195

Query  211  MLEETMAGHL-GKTITVVATGDESPMMRRLAPNTATAIAEYFRDLGQNVLLIVDSVTRFa  269
             ++   A+H   K + V AT+D +++ R  A++ AT++AEYFRD G+ V+L++DS+TR+A
Sbjct  196  FVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYA  255

Query  270  haarevaiaaeeppvarGYPPSVFSQLPRLLERAGPGSAEAGGSITGIYSVLVDGDDHND  329
            +A R+VA+A+ E P  RGYP+SVF +LPRLLER+G+ S    GSIT++Y+VL++++++ D
Sbjct  256  RALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE---GSITAFYTVLLESEEEAD  312

Query  330  PVSDTIRGTLDGHIVLDRAIAAQGRFPAVDIPASVSRLAKHNWTPEQRKLVMQLRSMVAR  389
            P++D IR+ LDGH+ L R +A+QG++PA+D+  SVSR+  +  TP +      +R +++R
Sbjct  313  PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR  372

Query  390  FEETRDLRAIGAYQKGHD  407
            +EE + +  +G Y+ G++
Sbjct  373  LEELQLFIDLGEYRPGEN  390