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Homologs of EXA29 gene of DQ437742

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) NCGM2_1806
( YP_005980051.1 )

TnpR resolvase

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

9e-29

100

2) LBP_p3g043
( YP_007988655.1 )

Putative resolvase

NC_021226
(Lactobacillus plantarum P-8)

1e-14

3) R0052_11245
( YP_006656741.1 )

resolvase

NC_018528
(Lactobacillus helveticus R0052)

3e-13

4) XNC1_0235
( YP_003710575.1 )

hypothetical protein

NC_014228
(Xenorhabdus nematophila ATCC 19061)

4e-13

5) TPY_0511
( YP_004718455.1 )

invertase/recombinase-like protein

NC_015757
(Sulfobacillus acidophilus TPY)

1e-12

6) Tint_3217
( YP_003644871.1 )

Resolvase domain protein

NC_014154
(Thiomonas intermedia K12)

5e-12

7) truncated-res
( NP_115319.1 )

truncated resolvase

NC_002774
(Staphylococcus aureus Mu50)

1e-11

8) PSPPH_A0076
( YP_272192.1 )

resolvase, truncated

NC_007274
(Pseudomonas syringae 1448A)

2e-11

9) pinE1
( YP_006116277.1 )

dna-invertase from lambdoid prophage e14

NC_017633
(Escherichia coli ETEC H10407)

3e-11

10) APECO78_03295
( YP_007379842.1 )

putative pinE invertase/site-specific DNA recombinase

NC_020163
(Escherichia coli APEC O78)

4e-11

11) ybl51
( YP_002998692.1 )

ybl51

NC_012892
(Escherichia coli BL21(DE3))

2e-10

12) ECD_00849
( YP_003053515.1 )

DNA-invertase

NC_012971
(Escherichia coli BL21(DE3))

2e-10

13) ECBD_2750
( YP_003036956.1 )

resolvase

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

2e-10

14) ECB_00849
( YP_003044067.1 )

putative DNA-invertase

NC_012967
(Escherichia coli REL606)

2e-10

15) EFD32_0432
( YP_006536799.1 )

transposonresolvase

NC_018221
(Enterococcus faecalis D32)

1e-08

16) EFS1_0456
( YP_007152248.1 )

resolvase

NC_019770
(Enterococcus faecalis Symbioflor 1)

1e-08

17) SSPP215
( YP_302596.1 )

resolvase

NC_007352
(Staphylococcus saprophyticus ATCC 15305)

3e-08

18) STMDT12_L00700
( YP_005250489.1 )

putative resolvase

NC_016861
(Salmonella enterica T000240)

5e-08

19) CKL_0296
( YP_001393698.1 )

resolvase

NC_009706
(Clostridium kluyveri DSM 555)

2e-04

• Sequence Alignments

1) NCGM2_1806 in NC_017549


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score =  119 bits (435),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 89/89 (100%), Positives = 89/89 (100%), Gaps = 0/89 (0%)

Query  1   MQGHRIGYVRVSSFDQNPERQLEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVV  60
           MQGHRIGYVRVSSFDQNPERQLEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVV
Sbjct  1   MQGHRIGYVRVSSFDQNPERQLEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVV  60

Query  61  HNMdrlarnlddlrrlVQKLTQRGVRSSS  89
           HNMDRLARNLDDLRRLVQKLTQRGVRSSS
Sbjct  61  HNMDRLARNLDDLRRLVQKLTQRGVRSSS  89

2) LBP_p3g043 in NC_021226


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 72.3 bits (255),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 39/81 (49%), Positives = 61/81 (76%), Gaps = 1/81 (1%)

Query  3   KIGYARVSSKEQHLARQLQALNGVDKLFTDKLSGANTQRPALQKLLTYIREGDIVLVTEL  62
           +IGY RVSS +Q+  RQL+    V K+FTDK SG +TQRP L+ LL+++REGD V+V ++
Sbjct  5   RIGYVRVSSFDQNPERQLEQ-TQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVHNM  63

Query  63  DRLGRNNQDLTKIMNIIQAKA  83
           DRL+RN +DL ++++ +  ++
Sbjct  64  DRLARNLDDLRRLVQKLTQRG  84

3) R0052_11245 in NC_018528


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 68.1 bits (239),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 35/66 (54%), Positives = 53/66 (81%), Gaps = 1/66 (1%)

Query  3   KIGYARVSSKEQHLDRQLAALKDVDKLFTDKLSGANTNRPELQKMLTYIREGDIVLVTEL  62
           +IGY RVSS +Q+ +RQL    +V K+FTDK SG +T+RP+L+ +L+++REGD V+V ++
Sbjct  5   RIGYVRVSSFDQNPERQLEQ-TQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVHNM  63

Query  63  DRLGRN  68
           DRL+RN
Sbjct  64  DRLARN  69

4) XNC1_0235 in NC_014228


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 67.6 bits (237),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 40/84 (48%), Positives = 62/84 (74%), Gaps = 5/84 (5%)

Query  4   AYIRISSAEQNSARQKIAIQNSGYEIKTVFTDIASGKDTHRPNLQQLLSTLISGDTLIVH  63
           +Y+R+SS +QN+ RQ   ++++  ++  VFTD ASGKDT+RP+L+ LLS +  GDT++VH
Sbjct  7   GYVRVSSFDQNPERQ---LEQT--QVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVH  61

Query  64  SIDRLCRNMMDMCYLTLDLKQRGI  87
           ++DRL RN+ D+  L   L QRG+
Sbjct  62  NMDRLARNLDDLRRLVQKLTQRGV  85

5) TPY_0511 in NC_015757


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 66.3 bits (232),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 37/84 (45%), Positives = 56/84 (67%), Gaps = 3/84 (3%)

Query  2   RIGYARVSTAEQHLALQEDALKAAGCEKIFTDTMSGAKADRPGLQAALEYARPGDVLVVW  61
           RIGY RVS+ +Q+    E  L  +   K+FTD  SG  ++RP L+A L + R GD +VV 
Sbjct  5   RIGYVRVSSFDQN---PERQLEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVH  61

Query  62  KLDRLGRSLLHLIQTVQTLADRGI  85
           ++DRL+R+L +L + VQ L++RG+
Sbjct  62  NMDRLARNLDDLRRLVQKLTQRGV  85

6) Tint_3217 in NC_014154


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 63.7 bits (222),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 43/88 (49%), Positives = 64/88 (73%), Gaps = 5/88 (5%)

Query  2   GQRIGYARVSTDDQNLDLQHDALRKAGIADDRLYSDTASGKDADRKELLACLKALREGDT  61
           G+RIGY RVS+ DQN + Q   L ++ ++  ++++D ASGKD++R +L A L  +REGDT
Sbjct  3   GHRIGYVRVSSFDQNPERQ---LEQTQVS--KVFTDKASGKDTQRPQLEALLSFVREGDT  57

Query  62  LVVWRLDRLGRSLPDLVRIVGELEHRGV  89
           +VV  +DRL+R+L DL R+V  L +RGV
Sbjct  58  VVVHNMDRLARNLDDLRRLVQKLTQRGV  85

7) truncated-res in NC_002774


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 62.4 bits (217),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 57/84 (68%), Gaps = 3/84 (3%)

Query  3   KIGYARVSTQDQSLDGQIDTLEEYGCERIFSEKASGRKTKRTELDKCLDYLREGDILVVY  62
           +IGY RVS+ DQ+ + Q   LE+    ++F++KASG+ T+R +L+  L ++REGD +VV 
Sbjct  5   RIGYVRVSSFDQNPERQ---LEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVH  61

Query  63  KLDRLGRTTKQLIELSQWLDENSI  86
           ++DRL+R   +L  L Q L + ++
Sbjct  62  NMDRLARNLDDLRRLVQKLTQRGV  85

8) PSPPH_A0076 in NC_007274


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 62.1 bits (216),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 36/84 (43%), Positives = 57/84 (68%), Gaps = 3/84 (3%)

Query  2   KIGYARVSTRDQNLDLQLDALKRAGCERIYQDVASGSKTARPALDELLGQVRAGDVLVIW  61
           +IGY RVS+ DQN + QL+   ++   +++ D ASG  T RP L+ LL+ VR GD +V+ 
Sbjct  5   RIGYVRVSSFDQNPERQLE---QTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVH  61

Query  62  KLDRMGRSLKHLVELVGNLIERKV  85
           ++DR++R+L +L  LV +L +R V
Sbjct  62  NMDRLARNLDDLRRLVQKLTQRGV  85

9) pinE1 in NC_017633


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 61.6 bits (214),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 38/83 (46%), Positives = 55/83 (67%), Gaps = 3/83 (3%)

Query  3   IGYVRVSTNDQNTDLQRNALNCAGCERFFEDKISGTKSDRPGLKKLLRTLSAGDTLVVWK  62
           IGYVRVS+ DQN + Q   L+ +   + F DK SG  ++RP L  LL  +  GDT+VV +
Sbjct  6   IGYVRVSSFDQNPERQ---LEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVHN  62

Query  63  LDRLGRSMRHLVTLIEELRQRGV  85
           +DRL+R++ +L  L++ L QRGV
Sbjct  63  MDRLARNLDDLRRLVQKLTQRGV  85

10) APECO78_03295 in NC_020163


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 60.8 bits (211),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 39/83 (47%), Positives = 56/83 (68%), Gaps = 3/83 (3%)

Query  3   IGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLRTLSEGDTLVVWK  62
           IGYVRVS+ DQN + Q   L+ +    +F DK SG  ++RP L  LL  + EGDT+VV +
Sbjct  6   IGYVRVSSFDQNPERQ---LEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVHN  62

Query  63  LDRLGRSMRHLVILVEELRERGV  85
           +DRL+R++ +L  LV+ L +RGV
Sbjct  63  MDRLARNLDDLRRLVQKLTQRGV  85

11) ECD_00849 in NC_012971


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 34/79 (44%), Positives = 52/79 (66%), Gaps = 3/79 (3%)

Query  3   IGYVRVSTNDQNTDLQRSALNCAGCERIFEDKISGTKSDRPGLKKLLRTLSAGDTLVVWK  62
           IGYVRVS+ DQN + Q   L+ +   ++F DK SG  ++RP L  LL  +  GDT+VV +
Sbjct  6   IGYVRVSSFDQNPERQ---LEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVHN  62

Query  63  LDRLGRSMRHLVTLIEELP  81
           +DRL+R++ +L  L++ L 
Sbjct  63  MDRLARNLDDLRRLVQKLT  81

12) ybl51 in NC_012892


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 34/79 (44%), Positives = 52/79 (66%), Gaps = 3/79 (3%)

Query  5   IGYVRVSTNDQNTDLQRSALNCAGCERIFEDKISGTKSDRPGLKKLLRTLSAGDTLVVWK  64
           IGYVRVS+ DQN + Q   L+ +   ++F DK SG  ++RP L  LL  +  GDT+VV +
Sbjct  6   IGYVRVSSFDQNPERQ---LEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVHN  62

Query  65  LDRLGRSMRHLVTLIEELP  83
           +DRL+R++ +L  L++ L 
Sbjct  63  MDRLARNLDDLRRLVQKLT  81

13) ECBD_2750 in NC_012947


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 34/79 (44%), Positives = 52/79 (66%), Gaps = 3/79 (3%)

Query  3   IGYVRVSTNDQNTDLQRSALNCAGCERIFEDKISGTKSDRPGLKKLLRTLSAGDTLVVWK  62
           IGYVRVS+ DQN + Q   L+ +   ++F DK SG  ++RP L  LL  +  GDT+VV +
Sbjct  6   IGYVRVSSFDQNPERQ---LEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVHN  62

Query  63  LDRLGRSMRHLVTLIEELP  81
           +DRL+R++ +L  L++ L 
Sbjct  63  MDRLARNLDDLRRLVQKLT  81

14) ECB_00849 in NC_012967


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 58.7 bits (203),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 34/79 (44%), Positives = 52/79 (66%), Gaps = 3/79 (3%)

Query  3   IGYVRVSTNDQNTDLQRSALNCAGCERIFEDKISGTKSDRPGLKKLLRTLSAGDTLVVWK  62
           IGYVRVS+ DQN + Q   L+ +   ++F DK SG  ++RP L  LL  +  GDT+VV +
Sbjct  6   IGYVRVSSFDQNPERQ---LEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVHN  62

Query  63  LDRLGRSMRHLVTLIEELP  81
           +DRL+R++ +L  L++ L 
Sbjct  63  MDRLARNLDDLRRLVQKLT  81

15) EFD32_0432 in NC_018221


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 52.9 bits (181),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 35/84 (42%), Positives = 54/84 (65%), Gaps = 3/84 (3%)

Query  3   IGYARVSKDDQNLGRQIDQLKNFGAEKIIQEKYTGIKRNRPGIEQLLQTIRKGDIVVVES  62
           IGY RVS  DQN  RQ++Q +     K++ +K +G   +RP +E LL  +R GD VVV++
Sbjct  6   IGYVRVSSFDQNPERQLEQTQ---VSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVHN  62

Query  63  ISRLGRNTLDILNLIQELDQKQIQ  86
           + RL+RN  D+  L+Q L Q+ ++
Sbjct  63  MDRLARNLDDLRRLVQKLTQRGVR  86

16) EFS1_0456 in NC_019770


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 52.9 bits (181),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 35/84 (42%), Positives = 54/84 (65%), Gaps = 3/84 (3%)

Query  3   IGYARVSKDDQNLGRQIDQLKNFGAEKIIQEKYTGIKRNRPGIEQLLQTIRKGDIVVVES  62
           IGY RVS  DQN  RQ++Q +     K++ +K +G   +RP +E LL  +R GD VVV++
Sbjct  6   IGYVRVSSFDQNPERQLEQTQ---VSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVHN  62

Query  63  ISRLGRNTLDILNLIQELDQKQIQ  86
           + RL+RN  D+  L+Q L Q+ ++
Sbjct  63  MDRLARNLDDLRRLVQKLTQRGVR  86

17) SSPP215 in NC_007352


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 51.6 bits (176),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 26/63 (42%), Positives = 45/63 (72%), Gaps = 3/63 (4%)

Query  3   KIGYARVSTQDQSLDAQIDTLEEYGCERIFSEKASGRKTKRTELDKCLDYLREGDILVIY  62
           +IGY RVS+ DQ+ + Q   LE+    ++F++KASG+ T+R +L+  L ++REGD +V+ 
Sbjct  5   RIGYVRVSSFDQNPERQ---LEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVH  61

Query  63  KLD  65
           ++D
Sbjct  62  NMD  64

18) STMDT12_L00700 in NC_016861


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 50.5 bits (172),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 35/83 (43%), Positives = 58/83 (70%), Gaps = 4/83 (4%)

Query  5   GYARVSTSDQDLTLQTQILRAAGCEIIRAEKASGSGRTGRSELQLLLEFLRPGDTLMVTR  64
           GY RVS+ DQ+   + Q+ ++    ++ ++KASG + T R++L+ LL F+R GDT++V  
Sbjct  7   GYVRVSSFDQNP--ERQLEQTQVSKVF-TDKASGKD-TQRPQLEALLSFVREGDTVVVHN  62

Query  65  VDRLARSIKDLQDIVYALNQQGV  87
           +DRLAR++ DL+ +V  L Q+GV
Sbjct  63  MDRLARNLDDLRRLVQKLTQRGV  85

19) CKL_0296 in NC_009706


> DQ437742|35|G30|90569567|ABD94638.1|Pseudomonas_aeruginosa_6077|-|34505..34774|-|EXA29|Tn1721 
resolvase
Length=89

 Score = 38.7 bits (127),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 29/65 (45%), Positives = 40/65 (62%), Gaps = 5/65 (7%)

Query  1   MNNKMFGYVRVSSKEQNIERQIKEIQELGINERDIFIDKRSGKDFNRHQYQALKQCLREG  60
           M+   +GYVRVSS +QN ERQ+ + Q        +F DK SGKD +R Q +AL   +REG
Sbjct  1   MQGHRIGYVRVSSFDQNPERQLEQTQV-----SKVFTDKASGKDTQRPQLEALLSFVREG  55

Query  61  DLLYI  65
           D + +
Sbjct  56  DTVVV  60