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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpG gene of AY597277

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Psyr_1199
( YP_234291.1 )

type III secretion protein HrpG

NC_007005
(Pseudomonas syringae B728a)

3e-51

2) hrpG
( YP_273538.1 )

type III secretion component protein HrpG

NC_005773
(Pseudomonas syringae 1448A)

2e-50

3) hrpG
( NP_791215.1 )

type III secretion protein HrpG

NC_004578
(Pseudomonas syringae DC3000)

2e-40

4) Pmen_0024
( YP_001185531.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

1e-28

• Sequence Alignments

1) Psyr_1199 in NC_007005


> AY597277|35|G35|51103006|AAT96153.1|Pseudomonas_viridiflava_LP23.1a|-|31785..32225|hrpG|-|HrpG
Length=146

 Score =  194 bits (719),  Expect = 3e-51, Method: Compositional matrix adjust.
 Identities = 119/146 (82%), Positives = 132/146 (91%), Gaps = 0/146 (0%)

Query  1    MSSMDFSEFEEVVGLWRDQRPASPLDCWVDDANARLERVGGGVRCSIELLDPYDANDPQR  60
            MSSMDFS+FE V+G W  QRP +PLDCWVDDANARLE  G+GVRCSIELLDP+DANDPQR
Sbjct  1    MSSMDFSDFEAVLGQWCAQRPLTPLDCWVDDANARLEVQGDGVRCSIELLDPFDANDPQR  60

Query  61   IEALLSHGGASLACACDGAFAIDPQTRCMVLVSWMPGPCSLADLLNRLESLANQRAALLS  120
            IEALL +GGASLACACDGA+AIDPQT CMVLV W+P PC+L DLLN LESLANQRAALLS
Sbjct  61   IEALLCQGGASLACACDGALAIDPQTGCMVLVCWIPNPCGLDDLLNYLESLANQRAALLS  120

Query  121  LMHTTLVNSVPALAGRTTLNHRQPGV  146
            LMHTTLV +V+A++GRTTLNHRQPGV
Sbjct  121  LMHTTLVTNVSAFSGRTTLNHRQPGV  146

2) hrpG in NC_005773


> AY597277|35|G35|51103006|AAT96153.1|Pseudomonas_viridiflava_LP23.1a|-|31785..32225|hrpG|-|HrpG
Length=146

 Score =  191 bits (708),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 116/146 (80%), Positives = 129/146 (89%), Gaps = 0/146 (0%)

Query  1    MSSMDFSEFAEVVGQWCDQRPATALDCWVDDANVRLEVVGHGIRCSIELLDPYDANDSQR  60
            MSSMDFS+F  V+GQWC QRP T+LDCWVDDAN RLEV G+G+RCSIELLDP+DAND+QR
Sbjct  1    MSSMDFSDFEAVLGQWCAQRPLTPLDCWVDDANARLEVQGDGVRCSIELLDPFDANDPQR  60

Query  61   IEALLSHGGASLACACDGAFAIDPQTRCMVLVTWIPNPCNLADLLARLESLANQRAALLS  120
            IEALL +GGASLACACDGA+AIDPQT CMVLV WIPNPC L DLL  LESLANQRAALLS
Sbjct  61   IEALLCQGGASLACACDGALAIDPQTGCMVLVCWIPNPCGLDDLLNYLESLANQRAALLS  120

Query  121  LMQTTIGDMTPAISGRTTLNHRQPGV  146
            LM+TT+    +A+SGRTTLNHRQPGV
Sbjct  121  LMHTTLVTNVSAFSGRTTLNHRQPGV  146

3) hrpG in NC_004578


> AY597277|35|G35|51103006|AAT96153.1|Pseudomonas_viridiflava_LP23.1a|-|31785..32225|hrpG|-|HrpG
Length=146

 Score =  158 bits (582),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 105/143 (74%), Positives = 126/143 (89%), Gaps = 0/143 (0%)

Query  1    MEFSEFTEIVGQWSAQRPAMPLDCWIDDANARLAVVGDGVRCSIELLDPYDAGDPQRlea  60
            M+FS+F  ++GQW AQRP  PLDCW+DDANARL V GDGVRCSIELLDP+DA DPQR+EA
Sbjct  4    MDFSDFEAVLGQWCAQRPLTPLDCWVDDANARLEVQGDGVRCSIELLDPFDANDPQRIEA  63

Query  61   llgeggaslacacDGALAIDPQTRCVVLVSWMANPCSLGDLLDRLESLANQRAAMLSLMQ  120
            LL +GGASLACACDGALAIDPQT C+VLV W++NPC+L+DLL+ LESLANQRAA+LSLM+
Sbjct  64   LLCQGGASLACACDGALAIDPQTGCMVLVCWIPNPCGLDDLLNYLESLANQRAALLSLMH  123

Query  121  TTIRNTTPTLSGRSILNHRQPGV  143
            TT+    +++SGR+ LNHRQPGV
Sbjct  124  TTLVTNVSAFSGRTTLNHRQPGV  146

4) Pmen_0024 in NC_009439


> AY597277|35|G35|51103006|AAT96153.1|Pseudomonas_viridiflava_LP23.1a|-|31785..32225|hrpG|-|HrpG
Length=146

 Score =  119 bits (434),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 80/143 (56%), Positives = 114/143 (80%), Gaps = 2/143 (1%)

Query  1    MEFSEFSDVIAQWCEASAL-PLDCWIDDANARLAEMGGGVRCSLEVLNPFEASDQQRLQA  59
            M+FS+F  V++QWC   +L PLDCW+DDANARL   G+GVRCS+E+L+PF+A+D QR++A
Sbjct  4    MDFSDFEAVLGQWCAQRPLTPLDCWVDDANARLEVQGDGVRCSIELLDPFDANDPQRIEA  63

Query  60   VLSQggaglacacdgafaIDPDTHALVLVNWHRAPCSVDQLLASLERLANQRAALISLLH  119
            +L QGGA+LACACDGA+AIDP+T  +VLV W   PC++D+LL  LE LANQRAAL+SL+H
Sbjct  64   LLCQGGASLACACDGALAIDPQTGCMVLVCWIPNPCGLDDLLNYLESLANQRAALLSLMH  123

Query  120  VS-IREAALIAPQPSFNALHPGV  141
             + + + + ++ + ++N  +PGV
Sbjct  124  TTLVTNVSAFSGRTTLNHRQPGV  146