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Homologs of EXA28 gene of DQ437742

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) tnpR
( YP_209314.1 )

recombinase

NC_006856
(Salmonella enterica SC-B67)

3e-26

2) C624_02875
( YP_008065292.1 )

hypothetical protein

NC_021351
(Corynebacterium glutamicum SCgG1)

3e-17

3) C629_02875
( YP_008068315.1 )

hypothetical protein

NC_021352
(Corynebacterium glutamicum SCgG2)

3e-17

4) PAGK_2392
( YP_007888626.1 )

ResA

NC_021086
(Propionibacterium acnes HL096PA1)

2e-14

5) CD31A_2232
( YP_005158924.1 )

hypothetical protein

NC_016799
(Corynebacterium diphtheriae 31A)

2e-14

6) CDBH8_2186
( YP_005161268.1 )

hypothetical protein

NC_016800
(Corynebacterium diphtheriae BH8)

2e-14

7) STMDT12_L00500
( YP_005250469.1 )

putative resolvase

NC_016861
(Salmonella enterica T000240)

1e-08

8) CDHC02_1707
( YP_005165487.1 )

transposase-like protein

NC_016802
(Corynebacterium diphtheriae HC02)

2e-08

9) CDHC04_1683
( YP_005140992.1 )

transposase-like protein

NC_016788
(Corynebacterium diphtheriae HC04)

2e-08

10) CDVA01_1649
( YP_005145556.1 )

transposase-like protein

NC_016790
(Corynebacterium diphtheriae VA01)

2e-08

11) NmulC_2795
( YP_413491.1 )

resolvase family site-specific recombinase

NC_007616
(Nitrosospira multiformis ATCC 25196)

1e-04

• Sequence Alignments

1) tnpR in NC_006856


> DQ437742|34|G29|90569566|ABD94637.1|Pseudomonas_aeruginosa_6077|-|34216..34470|-|EXA28|Tn1721 
resolvase
Length=84

 Score =  111 bits (403),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 64/83 (78%), Positives = 71/83 (86%), Gaps = 0/83 (0%)

Query  17  MANLMLSVMGAFAEFERALIRERQREGIVLAKQRGAYRGRKKSLNSEQIAELKRRVAAGD  76
           MANLMLSVMGAFAEFERALIRERQREGI LAKQRGAYRGRKK+L+ EQ A L  R AAG+
Sbjct  1   MANLMLSVMGAFAEFERALIRERQREGITLAKQRGAYRGRKKALSDEQAATLWMRAAAGE  60

Query  77  QKTLVARDFGISRETLYQYLRED  99
            K+ +AR F ISR+TLYQYLR +
Sbjct  61  PKAQLARAFNISRQTLYQYLRTN  83

2) C624_02875 in NC_021351


> DQ437742|34|G29|90569566|ABD94637.1|Pseudomonas_aeruginosa_6077|-|34216..34470|-|EXA28|Tn1721 
resolvase
Length=84

 Score = 81.3 bits (289),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 44/79 (56%), Positives = 61/79 (78%), Gaps = 0/79 (0%)

Query  19  ATLMLGILGSFAEFERSIIRERQAEGIALAKKAGKFTGRKKALSPEQVEHARMRVEARET  78
           A LML+++G+FAEFER++IRERQ EGI+LAK+ G + GRKKALS EQ    +MR  A E 
Sbjct  2   ANLMLSVMGAFAEFERALIRERQREGITLAKQRGAYRGRKKALSDEQAATLWMRAAAGEP  61

Query  79  KTAIAQDLSVSRATLYRAL  97
           K+ +A+ +++SR TLY+ L
Sbjct  62  KAQLARAFNISRQTLYQYL  80

3) C629_02875 in NC_021352


> DQ437742|34|G29|90569566|ABD94637.1|Pseudomonas_aeruginosa_6077|-|34216..34470|-|EXA28|Tn1721 
resolvase
Length=84

 Score = 81.3 bits (289),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 44/79 (56%), Positives = 61/79 (78%), Gaps = 0/79 (0%)

Query  19  ATLMLGILGSFAEFERSIIRERQAEGIALAKKAGKFTGRKKALSPEQVEHARMRVEARET  78
           A LML+++G+FAEFER++IRERQ EGI+LAK+ G + GRKKALS EQ    +MR  A E 
Sbjct  2   ANLMLSVMGAFAEFERALIRERQREGITLAKQRGAYRGRKKALSDEQAATLWMRAAAGEP  61

Query  79  KTAIAQDLSVSRATLYRAL  97
           K+ +A+ +++SR TLY+ L
Sbjct  62  KAQLARAFNISRQTLYQYL  80

4) PAGK_2392 in NC_021086


> DQ437742|34|G29|90569566|ABD94637.1|Pseudomonas_aeruginosa_6077|-|34216..34470|-|EXA28|Tn1721 
resolvase
Length=84

 Score = 71.8 bits (253),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 42/78 (54%), Positives = 60/78 (77%), Gaps = 0/78 (0%)

Query  1   MLHLLGALAEFERALIHERQAEGIAVAKKQGRYRGRKPALSEGQLARARRLVAEGVPKTK  60
           ML ++GA+AEFERALI+ERQ EGI++AK++G YRGRK ALS+ Q A  +   A G PK++
Sbjct  5   MLSVMGAFAEFERALIRERQREGITLAKQRGAYRGRKKALSDEQAATLWMRAAAGEPKAQ  64

Query  61  VAAQLGVGRSTLYRALRS  78
           +A  + ++R TLY+ LR+
Sbjct  65  LARAFNISRQTLYQYLRT  82

5) CD31A_2232 in NC_016799


> DQ437742|34|G29|90569566|ABD94637.1|Pseudomonas_aeruginosa_6077|-|34216..34470|-|EXA28|Tn1721 
resolvase
Length=84

 Score = 71.8 bits (253),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 60/80 (75%), Gaps = 0/80 (0%)

Query  9   VAKLMLGLLGSVAEFERAIICERQAEDIAKAKARGVYKGRAKVLNEEQIMQAREWVNEGI  68
           +A+LML+++G+ AEFERA+I ERQ E+I+ AK RG Y+GR K L++EQ    + +   G 
Sbjct  1   MANLMLSVMGAFAEFERALIRERQREGITLAKQRGAYRGRKKALSDEQAATLWMRAAAGE  60

Query  69  SKAEVARRLGIGRTTLYKYL  88
           +KA++AR + I+R TLY+YL
Sbjct  61  PKAQLARAFNISRQTLYQYL  80

6) CDBH8_2186 in NC_016800


> DQ437742|34|G29|90569566|ABD94637.1|Pseudomonas_aeruginosa_6077|-|34216..34470|-|EXA28|Tn1721 
resolvase
Length=84

 Score = 71.8 bits (253),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 60/80 (75%), Gaps = 0/80 (0%)

Query  9   VAKLMLGLLGSVAEFERAIICERQAEDIAKAKARGVYKGRAKVLNEEQIMQAREWVNEGI  68
           +A+LML+++G+ AEFERA+I ERQ E+I+ AK RG Y+GR K L++EQ    + +   G 
Sbjct  1   MANLMLSVMGAFAEFERALIRERQREGITLAKQRGAYRGRKKALSDEQAATLWMRAAAGE  60

Query  69  SKAEVARRLGIGRTTLYKYL  88
           +KA++AR + I+R TLY+YL
Sbjct  61  PKAQLARAFNISRQTLYQYL  80

7) STMDT12_L00500 in NC_016861


> DQ437742|34|G29|90569566|ABD94637.1|Pseudomonas_aeruginosa_6077|-|34216..34470|-|EXA28|Tn1721 
resolvase
Length=84

 Score = 52.9 bits (181),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 30/73 (42%), Positives = 46/73 (64%), Gaps = 2/73 (2%)

Query  12  LDMLGVFAEFETNLRRERQMEGIAAAKARGVYRGRKPSI--DPAVVYRLYTIEKMGATAI  69
           L ++G FAEFE  L RERQ EGI+ AK RG YRGRK ++  + A   ++ +      + +
Sbjct  6   LSVMGAFAEFERALIRERQREGITLAKQRGAYRGRKKALSDEQAATLWMRAAAGEPKAQL  65

Query  70  ARQLGIGRASVYR  82
           AR + I+R ++Y+
Sbjct  66  ARAFNISRQTLYQ  78

8) CDHC02_1707 in NC_016802


> DQ437742|34|G29|90569566|ABD94637.1|Pseudomonas_aeruginosa_6077|-|34216..34470|-|EXA28|Tn1721 
resolvase
Length=84

 Score = 52.1 bits (178),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 31/66 (47%), Positives = 42/66 (64%), Gaps = 0/66 (0%)

Query  1   MLGLLGSVAEFERAIIRERQAEGIAQAKARGVYKGRAPVLDASQVEQDRRWVAEGSQKQR  60
           ML+++G+ AEFERA+IRERQ EGI+ AK RG Y+GR   L   Q    + + A G  K +
Sbjct  5   MLSVMGAFAEFERALIRERQREGITLAKQRGAYRGRKKALSDEQAATLWMRAAAGEPKAQ  64

Query  61  LHIALG  66
           L  A+ 
Sbjct  65  LARAFN  70

9) CDHC04_1683 in NC_016788


> DQ437742|34|G29|90569566|ABD94637.1|Pseudomonas_aeruginosa_6077|-|34216..34470|-|EXA28|Tn1721 
resolvase
Length=84

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 30/61 (50%), Positives = 40/61 (66%), Gaps = 0/61 (0%)

Query  1   MLGLLGSVAEFERAIIRERQAEGIAQAKARGVYKGRAPVLDASQVEQDRRWVAEGSQKQR  60
           ML+++G+ AEFERA+IRERQ EGI+ AK RG Y+GR   L   Q    + + A G  K +
Sbjct  5   MLSVMGAFAEFERALIRERQREGITLAKQRGAYRGRKKALSDEQAATLWMRAAAGEPKAQ  64

Query  61  L  61
           L
Sbjct  65  L  65

10) CDVA01_1649 in NC_016790


> DQ437742|34|G29|90569566|ABD94637.1|Pseudomonas_aeruginosa_6077|-|34216..34470|-|EXA28|Tn1721 
resolvase
Length=84

 Score = 51.9 bits (177),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 30/61 (50%), Positives = 40/61 (66%), Gaps = 0/61 (0%)

Query  1   MLGLLGSVAEFERAIIRERQAEGIAQAKARGVYKGRAPVLDASQVEQDRRWVAEGSQKQR  60
           ML+++G+ AEFERA+IRERQ EGI+ AK RG Y+GR   L   Q    + + A G  K +
Sbjct  5   MLSVMGAFAEFERALIRERQREGITLAKQRGAYRGRKKALSDEQAATLWMRAAAGEPKAQ  64

Query  61  L  61
           L
Sbjct  65  L  65

11) NmulC_2795 in NC_007616


> DQ437742|34|G29|90569566|ABD94637.1|Pseudomonas_aeruginosa_6077|-|34216..34470|-|EXA28|Tn1721 
resolvase
Length=84

 Score = 39.3 bits (129),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 31/76 (41%), Positives = 47/76 (62%), Gaps = 1/76 (1%)

Query  1   MGALAEFERSLISERSKAGMQAARRRGKHVGRPGKLSQEQINHAAQMVREGRETVSGMAG  60
           MGA+AEFER+LI ER + G+  A++RG   GR   LS+EQ   +  M   + E  + +A 
Sbjct  9   MGAFAEFERALIRERQREGITLAKQRGAYRGRKKALSDEQAA-TLWMRAAAGEPKAQLAR  67

Query  61  LLNVDRGTLRRALKAN  76
            +N+ R TL + L++N
Sbjct  68  AFNISRQTLYQYLRTN  83