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Homologs of hrpF gene of NC_004578_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpF
( NP_791214.1 )

type III secretion protein HrpF

NC_004578
(Pseudomonas syringae DC3000)

5e-28

100

2) Pmen_0025
( YP_001185532.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

1e-09

• Sequence Alignments

1) hrpF in NC_004578


> NC_004578_P1|33|G24|28868595|NP_791214.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|25852..26076|hrpF|PSPTO_1387|type 
III secretion protein HrpF
Length=74

 Score =  117 bits (427),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 74/74 (100%), Positives = 74/74 (100%), Gaps = 0/74 (0%)

Query  1   MISFNSLQRHLDNSVSRAHTNMDQAAMEASESGTVEDLQAFNDAQQQVDVAGIAVNECLR  60
           MISFNSLQRHLDNSVSRAHTNMDQAAMEASESGTVEDLQAFNDAQQQVDVAGIAVNECLR
Sbjct  1   MISFNSLQRHLDNSVSRAHTNMDQAAMEASESGTVEDLQAFNDAQQQVDVAGIAVNECLR  60

Query  61  AKHGINKAVIDGIQ  74
           AKHGINKAVIDGIQ
Sbjct  61  AKHGINKAVIDGIQ  74

2) Pmen_0025 in NC_009439


> NC_004578_P1|33|G24|28868595|NP_791214.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|25852..26076|hrpF|PSPTO_1387|type 
III secretion protein HrpF
Length=74

 Score = 56.8 bits (196),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 30/74 (41%), Positives = 56/74 (76%), Gaps = 0/74 (0%)

Query  1   MSSLEALRNRLDRAQESAVRNKDDALLQAAESADINDMHAYNEAARKAQLVSTVVSEELR  60
           M S+++L+ +LD +   A  N D+A ++A+ES+ ++D++A+N+A ++ ++ +  V+E LR
Sbjct  1   MISFNSLQRHLDNSVSRAHTNMDQAAMEASESGTVEDLQAFNDAQQQVDVAGIAVNECLR  60

Query  61  AQHGLTKAIIDGIQ  74
           A+HG+ KA+IDGIQ
Sbjct  61  AKHGINKAVIDGIQ  74