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Homologs of hrcJ gene of AY597281

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Ser39006_2905
( YP_008523287.1 )

type III secretion apparatus lipoprotein, YscJ/HrcJ family

NC_022268
(Serratia sp. ATCC 39006)

4e-64

2) Dd586_1896
( YP_003333460.1 )

type III secretion apparatus lipoprotein, YscJ/HrcJ family

NC_013592
(Dickeya dadantii Ech586)

3e-63

3) Dd1591_1899
( YP_003004228.1 )

type III secretion apparatus lipoprotein, YscJ/HrcJ family

NC_012912
(Dickeya zeae Ech1591)

4e-63

4) rscJ
( YP_006322242.1 )

type III secretion apparatus lipoprotein RscJ

NC_017911
(Pseudomonas fluorescens A506)

3e-60

5) hrcJ
( YP_003883232.1 )

type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)

NC_014500
(Dickeya dadantii 3937)

3e-60

6) hrcJ
( YP_001906477.1 )

HrcJ protein

NC_010694
(Erwinia tasmaniensis Et1/99)

1e-59

7) hrcJ
( YP_050190.1 )

type III secretion system protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

1e-59

8) PC1_2197
( YP_003017772.1 )

YscJ/HrcJ family type III secretion apparatus lipoprotein

NC_012917
(Pectobacterium carotovorum PC1)

1e-59

9) HrcJ
( YP_234287.1 )

type III secretion protein HrcJ

NC_007005
(Pseudomonas syringae B728a)

3e-59

10) hrcJ
( YP_003539952.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

6e-59

11) hrcJ
( YP_003529902.1 )

type III secretion inner-membrane protein HrcJ

NC_013961
(Erwinia amylovora CFBP1430)

6e-59

12) PCC21_022750
( YP_006646931.1 )

type III secretion protein

NC_018525
(Pectobacterium carotovorum PCC21)

8e-59

13) hrcJ
( YP_005818269.1 )

hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcJ protein

NC_017445
(Erwinia sp. Ejp617)

2e-58

14) rscJ
( YP_002870391.1 )

putative type III secretion protein

NC_012660
(Pseudomonas fluorescens SBW25)

3e-58

15) hrcJ
( YP_005804077.1 )

type III secretion innermembrane protein HrcJ

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-58

16) hrcJ
( YP_002650060.1 )

Hrp/hrc secretion/translocation pathway protein HrcJ

NC_012214
(Erwinia pyrifoliae Ep1/96)

3e-58

17) hrcJ
( NP_791211.1 )

type III secretion protein HrcJ

NC_004578
(Pseudomonas syringae DC3000)

1e-57

18) Marme_1087
( YP_004312198.1 )

YscJ/HrcJ family type III secretion apparatus lipoprotein

NC_015276
(Marinomonas mediterranea MMB-1)

2e-57

19) D781_3927
( YP_007346302.1 )

type III secretion apparatus lipoprotein, YscJ/HrcJ family

NC_020064
(Serratia marcescens FGI94)

8e-57

20) hrcJ
( YP_273534.1 )

type III secretion component protein HrcJ

NC_005773
(Pseudomonas syringae 1448A)

1e-56

21) Pmen_0028
( YP_001185535.1 )

YscJ/HrcJ family type III secretion apparatus lipoprotein

NC_009439
(Pseudomonas mendocina ymp)

1e-56

22) nolT
( YP_006397497.1 )

nodulation protein NolT

NC_018000
(Sinorhizobium fredii USDA 257)

1e-28

• Sequence Alignments

1) Ser39006_2905 in NC_022268


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  237 bits (884),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 137/206 (67%), Positives = 177/206 (86%), Gaps = 0/206 (0%)

Query  19   AGCGDQVELHRGLSENDANEVIAALGGYHIEAEKRLDKTGVTILLDKKDIDRAVNILSAA  78
            AGCGD++ELHR+L+E+DANEV+A L+G +I+A+KRLDK GV++L+  +DI RAV +L A 
Sbjct  19   AGCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAV  78

Query  79   GLPRQARTNLGEVFQKSGVISTPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPER  138
            GLPR++R+ LG+VF+K GVIS+PLEERARYIYALSQE+E TL+QIDGV+VARVHVVLPER
Sbjct  79   GLPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPER  138

Query  139  IAPGEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGLAGKSDKDLAIVFVPAEPY  198
            IAPGEP+QPASAAVFIK R++LEPDS+ PRIRRMVASSIPG++   ++ LA+VFVPA+ Y
Sbjct  139  IAPGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQGY  198

Query  199  IDHIPMISLGPFQFTPQEMAQLQWVV  224
             + + M+S+GPF+ T +    LQWV 
Sbjct  199  QESVEMVSIGPFNVTRERFEFLQWVA  224

2) Dd586_1896 in NC_013592


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  234 bits (872),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 135/205 (66%), Positives = 178/205 (87%), Gaps = 0/205 (0%)

Query  19   IAGCGDRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERSVNILNA  78
            +AGCGDR+ELHR+L+E+DANEV+A L+G +I+A+KR DK+GV++L+  +D+ R+V +L+A
Sbjct  18   MAGCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEA  77

Query  79   AGLPRQARTNLGQVFQKTGVISTPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPE  138
             GLPR++R+ LGQVF+K GVIS+PLEERARYIYALSQE+E TL+QIDGV+VARVHVVLPE
Sbjct  78   VGLPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPE  137

Query  139  RIAPGEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGLAGKSEKDLAIVFVPAEP  198
            RIAPGEP+QPASAAVFIK R++LEPDS+ PRIRRMVASSIPG++   E+ LA+VFVPA+ 
Sbjct  138  RIAPGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQG  197

Query  199  YKDHIPTVSLGPFQLMPQTMTQLQW  223
            Y++ +  VS+GPF++  +    LQW
Sbjct  198  YQESVEMVSIGPFNVTRERFEFLQW  222

3) Dd1591_1899 in NC_012912


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  234 bits (871),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 135/205 (66%), Positives = 179/205 (88%), Gaps = 0/205 (0%)

Query  19   IAGCGDRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERAVNILNA  78
            +AGCGDR+ELHR+L+E+DANEV+A L+G +I+A+KR DK+GV++L+  +D+ RAV +L+A
Sbjct  18   MAGCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEA  77

Query  79   AGLPRQARTNLGQVFQKTGVISTPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPE  138
             GLPR++R+ LGQVF+K GVIS+PLEERARYIYALSQE+E TL+QIDGV+VARVHVVLPE
Sbjct  78   VGLPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPE  137

Query  139  RIAPGEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGLAGKSDKDLAIVFVPAEP  198
            RIAPGEP+QPASAAVFIK R++LEPDS+ PRIRRMVASSIPG++   ++ LA+VFVPA+ 
Sbjct  138  RIAPGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQG  197

Query  199  YKDHIPKVSLGPFQLTPQTMTQVQW  223
            Y++ +  VS+GPF++T +    +QW
Sbjct  198  YQESVEMVSIGPFNVTRERFEFLQW  222

4) rscJ in NC_017911


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  224 bits (835),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 142/207 (69%), Positives = 176/207 (86%), Gaps = 4/207 (1%)

Query  17   LSGCGDRVELHRQLSEQEANEVVAELADKHIRAQKTPAKDGVVVTVNTNDIGRAVRTLEA  76
            ++GCGDR+ELHR+L+EQ+ANEV+AELA+K+I AQK   K+GV V V+T+DI+RAVR LEA
Sbjct  18   MAGCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEA  77

Query  77   AGLPRLARTTMGDTFRKEGVISTPLEERARYIYALSQELETTLSKIDGVIVARVHVVLPE  136
             GLPR +R+T+G+ FRKEGVIS+PLEERARYIYALSQELE TLS+IDGV+VARVHVVLPE
Sbjct  78   VGLPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPE  137

Query  137  RIAPGEPVQPASASVFIKHDPRLDPDNIRARVRRMVASSIPGMTTAVDNPQKLTVVFVPA  196
            RIAPGEPVQPASA+VFIKH + L+PD++ +R+RRMVASSIPGMT A  + +KL+VVFVPA
Sbjct  138  RIAPGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNA--DERKLAVVFVPA  195

Query  197  STYQEQQRLVYFGPFLVPGDDLGF--W  221
              YQE   +V +GPF V  + + F  W
Sbjct  196  QGYQESVEMVSIGPFNVTRERFEFLQW  222

5) hrcJ in NC_014500


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  224 bits (833),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 130/198 (66%), Positives = 171/198 (87%), Gaps = 0/198 (0%)

Query  1    MELHRGLSENDANEVIAALGGYHIGAEKRTEKTGVSILIDVKDMERAVNILNAAGLPRQA  60
            MELHR+L+E+DANEV+A L+G +I+A+KR +K GV++L+  +D+ RAV +L+A GLPR++
Sbjct  25   MELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRS  84

Query  61   RTNLGQVFQKTGVISTPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAPGEP  120
            R+ LGQVF+K GVIS+PLEERARYIYALSQE+E TL+QIDGV+VARVHVVLPERIAPGEP
Sbjct  85   RSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEP  144

Query  121  IQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGLAGKSDKDLAIVFVPAEPYKDHIPT  180
            +QPASAAVFIK R++LEPDS+ PRIRRMVASSIPG++   ++ LA+VFVPA+ Y++ +  
Sbjct  145  VQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQGYQESVEM  204

Query  181  VSLGPFQLTPQTMTQLQW  198
            VS+GPF++T +    LQW
Sbjct  205  VSIGPFNVTRERFEFLQW  222

6) hrcJ in NC_010694


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  222 bits (826),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 131/197 (67%), Positives = 175/197 (89%), Gaps = 0/197 (0%)

Query  19   GCDDRVELNHGLTENDANEVAAELGRYHIQAEKRNNKDGITVLVNAEELNRAVHILDAAG  78
            GC+DR+EL+++LTE+DANEV AEL+  +I+A+KR +K+G++VLV++++++RAV++L+A G
Sbjct  20   GCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVG  79

Query  79   LPRPARTNLGEVFQKNGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERI  138
            LPR +R+ LG+VF+K+GVIS+PLEERARYIYALSQE+E TLSQIDGV+VARVHVVLPERI
Sbjct  80   LPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERI  139

Query  139  APGEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGLAARSDKDLAIVFVPAETYQ  198
            APGEPVQPASAAVFIK R+DL+PD + PRIRRMVASS+PG++   ++ LA+VFVPA+ YQ
Sbjct  140  APGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQGYQ  199

Query  199  DKPTEVSFGPFRVTPQR  215
            +    VS+GPF VT +R
Sbjct  200  ESVEMVSIGPFNVTRER  216

7) hrcJ in NC_004547


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  222 bits (827),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 127/204 (63%), Positives = 177/204 (87%), Gaps = 0/204 (0%)

Query  16   AGCGEPIELNRGLSENDANEAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAA  75
            AGCG+ +EL+R+L+E+DANE ++ L+  +I+A+KR++K GV++++ ++++ RAV +L+A 
Sbjct  19   AGCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAV  78

Query  76   GLPKQSRTNLGEVFQKSGVISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPER  135
            GLP++SR+ LG+VF+K GVIS+PLEERARYIYALSQE+E TL+QIDGV+VARVHVVLPER
Sbjct  79   GLPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPER  138

Query  136  IAPGEPVQPASAAVFIKYRAELEPDGMEPRIRRMVASSIPGLSGKDDKELAIVFVPAEPY  195
            IAPGEPVQPASAAVFIK RA+LEPD++ PRIRRMVASSIPG++  D++ LA+VFVPA+ Y
Sbjct  139  IAPGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQGY  198

Query  196  QDTIPVVTLGPFTLTPDEMRRWQW  219
            Q+++ +V++GPF +T +     QW
Sbjct  199  QESVEMVSIGPFNVTRERFEFLQW  222

8) PC1_2197 in NC_012917


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  222 bits (826),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 128/205 (63%), Positives = 178/205 (87%), Gaps = 0/205 (0%)

Query  15   LAGCGEPIELNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNA  74
            +AGCG+ +EL+R+L+E+DANE ++ L+  +I+A+KR+DK GV++++ ++++ RAV +L+A
Sbjct  18   MAGCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEA  77

Query  75   AGLPKQSRTNLGEVFQKSGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPE  134
             GLP++SR+ LG+VF+K GVIS+PLEERARYIYALSQE+E TL+QIDGV+VARVHVVLPE
Sbjct  78   VGLPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPE  137

Query  135  RIAPGEPVQPASAAVFIKYRAELEPDGMEPRIRRMVASSIPGLSGKDDKELAIVFVPAEP  194
            RIAPGEPVQPASAAVFIK RA+LEPD++ PRIRRMVASSIPG++  D++ LA+VFVPA+ 
Sbjct  138  RIAPGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQG  197

Query  195  YQDTIPVVTLGPFTLTPDEMRRWQW  219
            YQ+++ +V++GPF +T +     QW
Sbjct  198  YQESVEMVSIGPFNVTRERFEFLQW  222

9) HrcJ in NC_007005


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  221 bits (822),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 136/207 (66%), Positives = 178/207 (86%), Gaps = 4/207 (1%)

Query  16   LGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNA  75
            ++GC+D  +L  +L+EQD+NEV+A LA+++IDA+KRL+K GV V V+T D++RAVRVL+A
Sbjct  18   MAGCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEA  77

Query  76   AGLPRQSRASLGDIFKKEGVISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPE  135
             GLPR+SR++LG++F+KEGVIS+PLEERARYIYALSQELE TLSQIDGV+VARVHVVLPE
Sbjct  78   VGLPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPE  137

Query  136  RIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSAESKKFSIVFVPA  195
            RIAPGEPVQPASAAVFIKH A L+PDSV  RI++MVASSIPGM+  +A+ +K+++VFVPA
Sbjct  138  RIAPGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMT--NADERKLAVVFVPA  195

Query  196  TEFQETTQWVSFGPFKLDSANLPF--W  220
              +QE+ + VS+GPF++    + F  W
Sbjct  196  QGYQESVEMVSIGPFNVTRERFEFLQW  222

10) hrcJ in NC_013971


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  220 bits (818),  Expect = 6e-59, Method: Compositional matrix adjust.
 Identities = 132/205 (65%), Positives = 175/205 (86%), Gaps = 0/205 (0%)

Query  19   GCNDQVELNHGLTENDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAG  78
            GC D++EL+++LTE+DANEV AEL+  +I+A+K  +K G++VLV + +++RAV++L+A G
Sbjct  20   GCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVG  79

Query  79   LPRPARTNLGEVFQKNGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERI  138
            LPR +R+ LG+VF+K+GVIS+PLEERARYIYALSQE+E TLSQIDGV+VARVHVVLPERI
Sbjct  80   LPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERI  139

Query  139  APGEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGLAGRSDKDLAIVFVPAESYQ  198
            APGEPVQPASAAVFIK R+DL+PD + PRIRRMVASS+PG++   ++ LA+VFVPA++YQ
Sbjct  140  APGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQGYQ  199

Query  199  DKPPQVSFGPFLVTPERSAQLSWLS  223
            +    VS+GPF VT ER   L W++
Sbjct  200  ESVEMVSIGPFNVTRERFEFLQWVA  224

11) hrcJ in NC_013961


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  220 bits (818),  Expect = 6e-59, Method: Compositional matrix adjust.
 Identities = 132/205 (65%), Positives = 175/205 (86%), Gaps = 0/205 (0%)

Query  19   GCNDQVELNHGLTENDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAG  78
            GC D++EL+++LTE+DANEV AEL+  +I+A+K  +K G++VLV + +++RAV++L+A G
Sbjct  20   GCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVG  79

Query  79   LPRPARTNLGEVFQKNGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERI  138
            LPR +R+ LG+VF+K+GVIS+PLEERARYIYALSQE+E TLSQIDGV+VARVHVVLPERI
Sbjct  80   LPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERI  139

Query  139  APGEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGLAGRSDKDLAIVFVPAESYQ  198
            APGEPVQPASAAVFIK R+DL+PD + PRIRRMVASS+PG++   ++ LA+VFVPA++YQ
Sbjct  140  APGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQGYQ  199

Query  199  DKPPQVSFGPFLVTPERSAQLSWLS  223
            +    VS+GPF VT ER   L W++
Sbjct  200  ESVEMVSIGPFNVTRERFEFLQWVA  224

12) PCC21_022750 in NC_018525


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  219 bits (816),  Expect = 8e-59, Method: Compositional matrix adjust.
 Identities = 126/205 (62%), Positives = 177/205 (87%), Gaps = 0/205 (0%)

Query  15   LTGCGEPIELNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNA  74
            ++GCG+ +EL+R+L+E+DANE ++ L+  +I+A+KR+DK GV++++ ++++ RAV +L+A
Sbjct  18   MAGCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEA  77

Query  75   AGLPKQSRTNLGEVFQKSGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPE  134
             GLP++SR+ LG+VF+K GVIS+PLEERARYIYALSQE+E TL+QIDGV+VARVHVVLPE
Sbjct  78   VGLPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPE  137

Query  135  RIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLSGKDDKELAIVFVPAEP  194
            RIAPGEPVQPASAAVFIK RA+LEPD++  RIRRMVASSIPG++  D++ LA+VFVPA+ 
Sbjct  138  RIAPGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQG  197

Query  195  YQDTIPVVTLGPFTLTPDEMRRWQW  219
            YQ+++ +V++GPF +T +     QW
Sbjct  198  YQESVEMVSIGPFNVTRERFEFLQW  222

13) hrcJ in NC_017445


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  218 bits (810),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 130/205 (64%), Positives = 176/205 (86%), Gaps = 0/205 (0%)

Query  19   GCNDQVELNHGLTENDANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAG  78
            GC D++EL+++LTE+DANEV AEL+  +I+A+K  +K+G++V+V + +++RAV++L+A G
Sbjct  20   GCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVG  79

Query  79   LPRPARTNLGEVFQKNGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERI  138
            LPR +R+ LG+VF+K+GVIS+PLEERARYIYALSQE+E TLSQIDGV+VARVHVVLPERI
Sbjct  80   LPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERI  139

Query  139  APGEPVQPASAAVFIKYRPDLDPDIIEPRIRRMVASSLPGLAGRSDKDLAIVFVPAESYQ  198
            APGEPVQPASAAVFIK R+DL+PD + PRIRRMVASS+PG++   ++ LA+VFVPA++YQ
Sbjct  140  APGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQGYQ  199

Query  199  DKPPKVSFGPFLVTPEQSAQLSWLS  223
            +    VS+GPF VT E+   L W++
Sbjct  200  ESVEMVSIGPFNVTRERFEFLQWVA  224

14) rscJ in NC_012660


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  218 bits (810),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 140/206 (68%), Positives = 176/206 (86%), Gaps = 4/206 (1%)

Query  25   SGCGDRVELHRQLSEQEANEVIAELADKHIRARKIPTKDGVTVSVDTNDIGRAVRTLEAV  84
            +GCGDR+ELHR+L+EQ+ANEV+AELA+K+I A+K   K+GV+V V T+DI+RAVR LEAV
Sbjct  19   AGCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAV  78

Query  85   GLPKLARATLGDTFRKEGVISTPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPER  144
            GLP+ +R+TLG+ FRKEGVIS+PLEERARYIYALSQELE TLS+IDGV+VARVHVVLPER
Sbjct  79   GLPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPER  138

Query  145  IAPGEPVQPASASVFIKHDPRLDPDNIRARVRRMVASSIPGMTTAVDNPQKLTVIFVPAV  204
            IAPGEPVQPASA+VFIKH + L+PD++ +R+RRMVASSIPGMT A  + +KL+V+FVPA 
Sbjct  139  IAPGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNA--DERKLAVVFVPAQ  196

Query  205  AYQEQKRLVYFGPFLIPADDRSF--W  228
            +YQE   +V +GPF +  +   F  W
Sbjct  197  GYQESVEMVSIGPFNVTRERFEFLQW  222

15) hrcJ in NC_017390


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  218 bits (810),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 130/205 (64%), Positives = 176/205 (86%), Gaps = 0/205 (0%)

Query  19   GCNDQVELNHGLTENDANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAG  78
            GC D++EL+++LTE+DANEV AEL+  +I+A+K  +K+G++V+V + +++RAV++L+A G
Sbjct  20   GCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVG  79

Query  79   LPRPARTNLGEVFQKNGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERI  138
            LPR +R+ LG+VF+K+GVIS+PLEERARYIYALSQE+E TLSQIDGV+VARVHVVLPERI
Sbjct  80   LPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERI  139

Query  139  APGEPVQPASAAVFIKYRPDLDPDIIEPRIRRMVASSLPGLAGRSDKDLAIVFVPAESYQ  198
            APGEPVQPASAAVFIK R+DL+PD + PRIRRMVASS+PG++   ++ LA+VFVPA++YQ
Sbjct  140  APGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQGYQ  199

Query  199  DKPPKVSFGPFLVTPEQSAQLSWLS  223
            +    VS+GPF VT E+   L W++
Sbjct  200  ESVEMVSIGPFNVTRERFEFLQWVA  224

16) hrcJ in NC_012214


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  218 bits (810),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 130/205 (64%), Positives = 176/205 (86%), Gaps = 0/205 (0%)

Query  19   GCNDQVELNHGLTENDANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAG  78
            GC D++EL+++LTE+DANEV AEL+  +I+A+K  +K+G++V+V + +++RAV++L+A G
Sbjct  20   GCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVG  79

Query  79   LPRPARTNLGEVFQKNGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERI  138
            LPR +R+ LG+VF+K+GVIS+PLEERARYIYALSQE+E TLSQIDGV+VARVHVVLPERI
Sbjct  80   LPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERI  139

Query  139  APGEPVQPASAAVFIKYRPDLDPDIIEPRIRRMVASSLPGLAGRSDKDLAIVFVPAESYQ  198
            APGEPVQPASAAVFIK R+DL+PD + PRIRRMVASS+PG++   ++ LA+VFVPA++YQ
Sbjct  140  APGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQGYQ  199

Query  199  DKPPKVSFGPFLVTPEQSAQLSWLS  223
            +    VS+GPF VT E+   L W++
Sbjct  200  ESVEMVSIGPFNVTRERFEFLQWVA  224

17) hrcJ in NC_004578


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  215 bits (801),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 135/203 (67%), Positives = 173/203 (86%), Gaps = 4/203 (1%)

Query  20   SDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSEMNRAVRVLDAAGLP  79
            +D  +L  +L+EQD+NEV+A LA+++IDA+KRL+K GV V V+T +++RAVRVL+A GLP
Sbjct  22   GDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLP  81

Query  80   RRSRTTLGEIFKKEGVISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAP  139
            RRSR+TLG++F+KEGVIS+PLEERARYIYALSQELE TLSQIDGV+VARVHVVLPERIAP
Sbjct  82   RRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAP  141

Query  140  GEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSVDSKKFSIVFVPAAEFQ  199
            GEPVQPASAAVFIKH A L+PDSV  RI++MVASSIPGM+  + D +K+++VFVPA  +Q
Sbjct  142  GEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMT--NADERKLAVVFVPAQGYQ  199

Query  200  ETTQWVSFGPFKLDSTNLPF--W  220
            E+ + VS+GPF++    + F  W
Sbjct  200  ESVEMVSIGPFNVTRERFEFLQW  222

18) Marme_1087 in NC_015276


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  215 bits (799),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 123/191 (65%), Positives = 168/191 (88%), Gaps = 1/191 (0%)

Query  19   GCQQDIELHKKLSEEDANEVIAELASRHIEAEKKATKEGVTVLVEASSMARAVRILEAAG  78
            GC + +ELH+ L+E+DANEV+AELA+++I+A+K+  K GV+VLV +  ++RAVR+LEA G
Sbjct  20   GCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVG  79

Query  79   LPRKPRANFGEVFKKEGVISSPLEERARYIYALSQELESTISQIDGILIARVHVVLPERI  138
            LPR++R+ +G+VF+KEGVISSPLEERARYIYALSQELE T+SQIDG+++ARVHVVLPERI
Sbjct  80   LPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERI  139

Query  139  APGEAVQPASSAVFIKHRPDLDPDVIRPRIERLVRTSIPGLSEKPD-KLSVVFVVTKAYQ  197
            APGE+VQPAS+AVFIKHR+DL+PD + PRI R+V +SIPG+++  + KL+VVFV +++YQ
Sbjct  140  APGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQGYQ  199

Query  198  EQQQLVRVGPF  208
            E  ++V +GPF
Sbjct  200  ESVEMVSIGPF  210

19) D781_3927 in NC_020064


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  213 bits (791),  Expect = 8e-57, Method: Compositional matrix adjust.
 Identities = 121/203 (60%), Positives = 169/203 (84%), Gaps = 0/203 (0%)

Query  19   SGCGDETVLNSNLSESDANDIVAALNHYHIAADKRVEKSGVSVLVAAADIERSVNILDAA  78
            +GCGD   L+ +L+E DAN+++A L   +I A+KR++K+GV+VLV++ DI R+V +L+A 
Sbjct  19   AGCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAV  78

Query  79   GLPRKARTNLGEVFQKSGVISSPMEERARYIYALSQEVESTLSQIDGVVVARVHVVLPER  138
            GLPR++R+ LG+VF+K GVISSP+EERARYIYALSQE+E TLSQIDGVVVARVHVVLPER
Sbjct  79   GLPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPER  138

Query  139  IAPGEPVQPASASVFIKYADSLDPDSIEPRIRRLVATSIPGLVGREDKDLAIVFVPAKAW  198
            IAPGEPVQPASA+VFIK    L+PDS+ PRIRR+VA+SIPG+   +++ LA+VFVPA++ 
Sbjct  139  IAPGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQGY  198

Query  199  RDQTPVVNLGPFALTPGQYSLVK  221
            ++   +V++GPF +T  ++ +++
Sbjct  199  QESVEMVSIGPFNVTRERFEFLQ  221

20) hrcJ in NC_005773


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  212 bits (790),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 133/201 (67%), Positives = 173/201 (87%), Gaps = 2/201 (0%)

Query  21   DETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPR  80
            D  +L  +L+EQD+NEV+A LA+++IDA+KRL+K GV V V+T D++RAVRVL+A GLPR
Sbjct  23   DRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPR  82

Query  81   QSRASLGDIFKKEGVISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPG  140
            +SR++LG++F+KEGVIS+PLEERARYIYALSQELE TLSQIDGV+VARVHVVLPERIAPG
Sbjct  83   RSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPG  142

Query  141  EPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQSAESKKFSIVFVPATEFQE  200
            EPVQPASAAVFIKH A L+PDSV  RI++MVASSIPGM+  +A+ +K+++VFVPA  +QE
Sbjct  143  EPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMT--NADERKLAVVFVPAQGYQE  200

Query  201  TTQWASFGPFKLDSEELPFWH  221
            + +  S+GPF++  E + F +
Sbjct  201  SVEMVSIGPFNVTRERFEFLQ  221

21) Pmen_0028 in NC_009439


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  212 bits (790),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 130/206 (64%), Positives = 170/206 (83%), Gaps = 3/206 (1%)

Query  16   SGCSDRTDLFSGLSELDANEVIASLGEHRISARKRAEKAGVVVTVDTAEINRAVRVLEAA  75
            +GC+DR +L  +L+E DANEV+A L+   I A+KR +K+GV V V T +I+RAVRVLEA 
Sbjct  19   AGCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAV  78

Query  76   GLPRRARTSLGEIFKKEGVISTPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPER  135
            GLPRR+R++LG++F+KEGVIS+PLEERARYIYALSQELE TLSQIDGV+VARVHVVLPER
Sbjct  79   GLPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPER  138

Query  136  IAPGEPVQPASAAVFIKHAASLEPDAVQRRIQQMVVSSIPGLASTGVESSEKFSIVFVPA  195
            IAPGEPVQPASAAVFIKH A LEPD+V  RI++MV SSIPG+++++     K+++VFVPA
Sbjct  139  IAPGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNAD---ERKLAVVFVPA  195

Query  196  AELQDADTLVPFGPFLIESQKLGFWQ  221
               Q++  +V++GPF +  +++ F Q
Sbjct  196  QGYQESVEMVSIGPFNVTRERFEFLQ  221

22) nolT in NC_018000


> AY597281|33|G33|51103136|AAT96279.1|Pseudomonas_viridiflava_ME3.1b|-|32476..33267|hrcJ|-|HrcJ
Length=263

 Score =  119 bits (436),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 85/194 (44%), Positives = 143/194 (74%), Gaps = 6/194 (3%)

Query  23   LQACS--VDLYTNLDEREANEMVATLLAKGIAAGRVVQKDGKLTVTVDEDQFSQAVTVLN  80
            + +C+  ++L  +L E++ANE++A L +K I A + ++K+G ++V V  +++S+AV VL+
Sbjct  18   MAGCGDRMELHRDLTEQDANEVLAELAGKNIDAQKRLDKGG-VAVLVSTQDISRAVRVLE  76

Query  81   MAGLPKEKFATLGTVFRQEGLVASPVQERAQMIYALSEELSRTVSEIDGVLSARVHVVLP  140
              GLP+   +TLG VFR+EG+++SP++ERA+ IYALS+EL +T+S+IDGV+ ARVHVVLP
Sbjct  77   AVGLPRRSRSTLGQVFRKEGVISSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLP  136

Query  141  DNDPLQRNAIPASASVFIRHEAELDVNPLIPRIKTLVANSISGLTYE---KVSVVPVASQ  197
            +  +      PASA+VFI+H A+L+ ++++PRI+ +VA+SI+G+T     K++VV V++Q
Sbjct  137  ERIAPGEPVQPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNADERKLAVVFVPAQ  196

Query  198  RTSEPVAAAELTSF  211
               E+V    + +F
Sbjct  197  GYQESVEMVSIGPF  210