Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of hrpT gene of AY597277

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpT
( YP_002381169.1 )

HrpT protein

NC_005773
(Pseudomonas syringae 1448A)

1e-20

2) Psyr_1201
( YP_234293.1 )

type III secretion protein HrpT

NC_007005
(Pseudomonas syringae B728a)

1e-20

3) hrpT
( NP_791217.1 )

type III secretion protein

NC_004578
(Pseudomonas syringae DC3000)

4e-16

4) PSEBR_c2g113
( YP_004356885.1 )

type III secretion protein

NC_015379
(Pseudomonas brassicacearum NFM421)

4e-08

5) H045_00210
( YP_007395614.1 )

putative type III secretion lipoprotein

NC_020209
(Pseudomonas poae RE*1-1-14)

4e-08

6) hrpT
( YP_005210962.1 )

protein HrpT

NC_016830
(Pseudomonas fluorescens F113)

5e-08

• Sequence Alignments

1) hrpT in NC_005773


> AY597277|33|G33|51103004|AAT96151.1|Pseudomonas_viridiflava_LP23.1a|-|29490..29693|hrpT|-|HrpT
Length=67

 Score = 92.6 bits (332),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 47/67 (71%), Positives = 61/67 (92%), Gaps = 0/67 (0%)

Query  1   MKISSIAVVLVLFATLSGCATHGCTGVACKRPDSTNRELVIWWPPDMRDGLDDQDHERDY  60
           MK  S+ +++VL+ATL+GC+T+GC G ACKRPDSTNRELVIWWPPDMR+G+D+ DHE+DY
Sbjct  1   MKSRSVVILFVLLATLAGCTTNGCKGYACKRPDSTNRELVIWWPPDMRQGVDESDHEQDY  60

Query  61  TVVKLKD  67
           TVV+L+D
Sbjct  61  TVVQLRD  67

2) Psyr_1201 in NC_007005


> AY597277|33|G33|51103004|AAT96151.1|Pseudomonas_viridiflava_LP23.1a|-|29490..29693|hrpT|-|HrpT
Length=67

 Score = 92.3 bits (331),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 48/67 (72%), Positives = 61/67 (92%), Gaps = 0/67 (0%)

Query  1   MKISSVAIVLVVFATLTGCATHGCSGTACKRPDSTSRELVIWWPPDMRDGLDDQDHERDY  60
           MK  SV I++V++ATL+GC+T+GC G ACKRPDST+RELVIWWPPDMR+G+D+ DHE+DY
Sbjct  1   MKSRSVVILFVLLATLAGCTTNGCKGYACKRPDSTNRELVIWWPPDMRQGVDESDHEQDY  60

Query  61  TVVKLRD  67
           TVV+LRD
Sbjct  61  TVVQLRD  67

3) hrpT in NC_004578


> AY597277|33|G33|51103004|AAT96151.1|Pseudomonas_viridiflava_LP23.1a|-|29490..29693|hrpT|-|HrpT
Length=67

 Score = 77.6 bits (275),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 46/50 (92%), Gaps = 0/50 (0%)

Query  18  GCATHGCAGNACKRPDSNNRELVIWWPPDMREGLDDRDHERDYTVVQLKD  67
           GC+T+GC G ACKRPDS NRELVIWWPPDMR+G+D+ DHE+DYTVVQL+D
Sbjct  18  GCTTNGCKGYACKRPDSTNRELVIWWPPDMRQGVDESDHEQDYTVVQLRD  67

4) PSEBR_c2g113 in NC_015379


> AY597277|33|G33|51103004|AAT96151.1|Pseudomonas_viridiflava_LP23.1a|-|29490..29693|hrpT|-|HrpT
Length=67

 Score = 51.1 bits (174),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 24/53 (46%), Positives = 39/53 (74%), Gaps = 1/53 (1%)

Query  17  FAGCANRSGCQGDACSRAEPDNGRLVIWWSPGMRGGLGSPEHPLDHSVVPLEN  69
           +AGC+  +GC+G AC R+++ N  LVIWW+P+MR G++ ++H  D +VV L +
Sbjct  16  LAGCTT-NGCKGYACKRPDSTNRELVIWWPPDMRQGVDESDHEQDYTVVQLRD  67

5) H045_00210 in NC_020209


> AY597277|33|G33|51103004|AAT96151.1|Pseudomonas_viridiflava_LP23.1a|-|29490..29693|hrpT|-|HrpT
Length=67

 Score = 51.1 bits (174),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 27/66 (41%), Positives = 42/66 (64%), Gaps = 2/66 (3%)

Query  1   MKHRLLCVTLISAALLITGCSPT-CRGDSCSRPQSTKDKLVIWWPPQMRVEPGPSGERAD  59
           MK R + + ++  A L +GC+   C+G +C RP+ST+  LVIWWPP+MR   + S++  D
Sbjct  1   MKSRSVVILFVLLATL-AGCTTNGCKGYACKRPDSTNRELVIWWPPDMRQGVDESDHEQD  59

Query  60  YQTISL  65
           Y  + L
Sbjct  60  YTVVQL  65

6) hrpT in NC_016830


> AY597277|33|G33|51103004|AAT96151.1|Pseudomonas_viridiflava_LP23.1a|-|29490..29693|hrpT|-|HrpT
Length=67

 Score = 50.8 bits (173),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 25/53 (48%), Positives = 38/53 (72%), Gaps = 1/53 (1%)

Query  17  FAGCANRFGCQGDACSRAEPDNGRLVIWWSPGMRGGLGSPEHPLDHTVVPLEN  69
           +AGC+   GC+G AC R+++ N  LVIWW+P+MR G++ ++H  D TVV L +
Sbjct  16  LAGCTTN-GCKGYACKRPDSTNRELVIWWPPDMRQGVDESDHEQDYTVVQLRD  67