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Homologs of i-inlH gene of AJ004808

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) i-inlH
( YP_004854956.1 )

putative internalin H

NC_016011
(Listeria ivanovii PAM 55)

5e-119

100

2) LIV_1691
( YP_004855441.1 )

putative soluble interanlin

NC_016011
(Listeria ivanovii PAM 55)

3e-92

3) i-inlL
( YP_004854951.1 )

putative internalin L

NC_016011
(Listeria ivanovii PAM 55)

2e-65

4) i-inlE
( YP_004854960.1 )

putative internalin E

NC_016011
(Listeria ivanovii PAM 55)

1e-51

5) LIV_0073
( YP_004853908.1 )

putative soluble internalin

NC_016011
(Listeria ivanovii PAM 55)

4e-46

6) i-inlF
( YP_004854959.1 )

putative internalin F

NC_016011
(Listeria ivanovii PAM 55)

6e-44

7) i-inlI
( YP_004854955.1 )

putative internalin I

NC_016011
(Listeria ivanovii PAM 55)

8e-36

8) i-inlD
( YP_004856222.1 )

putative i-internalin D

NC_016011
(Listeria ivanovii PAM 55)

6e-35

• Sequence Alignments

1) i-inlH in NC_016011


> AJ004808|33|G4|12054730|CAC20609.1|Listeria_ivanovii_ATCC_19119|+|6934..7752|i-inlH|-|internalin 
H
Length=272

 Score =  420 bits (1580),  Expect = 5e-119, Method: Compositional matrix adjust.
 Identities = 262/262 (100%), Positives = 262/262 (100%), Gaps = 0/262 (0%)

Query  1    MKKKDWLKSVVVAILVLMVGFCANIYFGTKVYAAGILHSIPINEIFQDYGLANAVKRQLG  60
            MKKKDWLKSVVVAILVLMVGFCANIYFGTKVYAAGILHSIPINEIFQDYGLANAVKRQLG
Sbjct  1    MKKKDWLKSVVVAILVLMVGFCANIYFGTKVYAAGILHSIPINEIFQDYGLANAVKRQLG  60

Query  61   KQSVTEVVSQRELDEIQKLNGNGCNIKSIKGVEYLTNLTKLYLSYNHISDISALASLSQL  120
            KQSVTEVVSQRELDEIQKLNGNGCNIKSIKGVEYLTNLTKLYLSYNHISDISALASLSQL
Sbjct  61   KQSVTEVVSQRELDEIQKLNGNGCNIKSIKGVEYLTNLTKLYLSYNHISDISALASLSQL  120

Query  121  EVLSLKQNKLKDINSLANLTKLRCLYVSNNQLRDLWALEGLKNLEYVDAEEQTCTNNPVV  180
            EVLSLKQNKLKDINSLANLTKLRCLYVSNNQLRDLWALEGLKNLEYVDAEEQTCTNNPVV
Sbjct  121  EVLSLKQNKLKDINSLANLTKLRCLYVSNNQLRDLWALEGLKNLEYVDAEEQTCTNNPVV  180

Query  181  YKPKVVIPNTIKDMSGKSVTPNFISDNGEYINTDVIWELPTYTTEVSYRFKDILNIGKDY  240
            YKPKVVIPNTIKDMSGKSVTPNFISDNGEYINTDVIWELPTYTTEVSYRFKDILNIGKDY
Sbjct  181  YKPKVVIPNTIKDMSGKSVTPNFISDNGEYINTDVIWELPTYTTEVSYRFKDILNIGKDY  240

Query  241  VLFSGVVIQPVELEAPAAENAP  262
            VLFSGVVIQPVELEAPAAENAP
Sbjct  241  VLFSGVVIQPVELEAPAAENAP  262

2) LIV_1691 in NC_016011


> AJ004808|33|G4|12054730|CAC20609.1|Listeria_ivanovii_ATCC_19119|+|6934..7752|i-inlH|-|internalin 
H
Length=272

 Score =  331 bits (1241),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 196/263 (75%), Positives = 231/263 (88%), Gaps = 0/263 (0%)

Query  1    MNKKEWLKNIIGVMLITAILMCVNTSLESKVQAANIPHPMPIDQIFPDPGLAKVVKQALG  60
            M+KK+WLK+++  +L+  +  C N  + +KV AA I H++PI++IF D GLA+ VK+ LG
Sbjct  1    MKKKDWLKSVVVAILVLMVGFCANIYFGTKVYAAGILHSIPINEIFQDYGLANAVKRQLG  60

Query  61   KQSVTDVVSQGELDGVQELIGGACNIKSIEGLQHFSNLKELLLPYNHISDISALASLSQL  120
            KQSVT+VVSQ ELD +Q L G +CNIKSI G++ ++NL  L L+YNHISDISALASLSQL
Sbjct  61   KQSVTEVVSQRELDEIQKLNGNGCNIKSIKGVEYLTNLTKLYLSYNHISDISALASLSQL  120

Query  121  EVISLNHNKLKDIDSLVNLTKLRCLYVSNNQLRDLWALEGLKNLESVDAEEQTCTNNPVV  180
            EV+SL++NKLKDI+SL NLTKLRCLYVSNNQLRDLWALEGLKNLE VDAEEQTCTNNPVV
Sbjct  121  EVLSLKQNKLKDINSLANLTKLRCLYVSNNQLRDLWALEGLKNLEYVDAEEQTCTNNPVV  180

Query  181  YKPKVVIPNTIKNMSGKSVTPNFISDNGEYINTDVIWELPTYTTEVSYRFKDILNIGKDY  240
            YKPKVVIPNTIK+MSGKSVTPNFISDNGEYINTDVIWELPTYTTEVSYRFKDILNIGKDY
Sbjct  181  YKPKVVIPNTIKDMSGKSVTPNFISDNGEYINTDVIWELPTYTTEVSYRFKDILNIGKDY  240

Query  241  VLFSGVVIQPLELATSANEKVSI  263
            VLFSGVVIQP+EL ++A E+ ++
Sbjct  241  VLFSGVVIQPVELEAPAAENAPL  263

3) i-inlL in NC_016011


> AJ004808|33|G4|12054730|CAC20609.1|Listeria_ivanovii_ATCC_19119|+|6934..7752|i-inlH|-|internalin 
H
Length=272

 Score =  241 bits (901),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 145/260 (56%), Positives = 201/260 (78%), Gaps = 2/260 (0%)

Query  1    MKRNNCLKKICTvlliiviailvNTNLETKAQAISIPYAMPINQIFPDYNLADVVKQHLG  60
            MK+++ LK +   +L++++++  N  + TK  A +I  ++PIN+IF DY LA+ VK++LG
Sbjct  1    MKKKDWLKSVVVAILVLMVGFCANIYFGTKVYAAGILHSIPINEIFQDYGLANAVKRQLG  60

Query  61   KQSVTDVVSQRDLDRVQNFNGNCCNITSMEGVQYFRHLKQLSMSYNQISDVSVLTPLRQL  120
            KQSVT+VVSQR+LD +Q++NGN CNI S+ GV+Y+ +L +L +SYN+ISD+S L++L QL
Sbjct  61   KQSVTEVVSQRELDEIQKLNGNGCNIKSIKGVEYLTNLTKLYLSYNHISDISALASLSQL  120

Query  121  EILILEHNKLEDIDVLVNIPTLEGLYVGNNALRDLWALEAMGNLKYVDASEQKCINKPVV  180
            E+L L +NKL DI+ L N+  L  LYV+NN LRDLWALE++ NL YVDA EQ C N+PVV
Sbjct  121  EVLSLKQNKLKDINSLANLTKLRCLYVSNNQLRDLWALEGLKNLEYVDAEEQTCTNNPVV  180

Query  181  YQPNLVITNTIKDMIGKPIVPNFISDNGAYVNTDVTWDLPNPHSITEVSYSFEEVQHIGK  240
            Y+P++VI NTIKDM GK++ PNFISDNG Y+NTDV W+LP     TEVSY F ++ +IGK
Sbjct  181  YKPKVVIPNTIKDMSGKSVTPNFISDNGEYINTDVIWELPT--YTTEVSYRFKDILNIGK  238

Query  241  EKVLFSGVVIQPIKPQTPAN  260
            + VLFSGVVIQP+  ++PA 
Sbjct  239  DYVLFSGVVIQPVELEAPAA  258

4) i-inlE in NC_016011


> AJ004808|33|G4|12054730|CAC20609.1|Listeria_ivanovii_ATCC_19119|+|6934..7752|i-inlH|-|internalin 
H
Length=272

 Score =  195 bits (725),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 125/251 (50%), Positives = 171/251 (69%), Gaps = 22/251 (8%)

Query  1    MRKSNWLKSVVVAMLVLIVGFCINIGSGTKVHAANILHPMPINQIFPDPDLAKVVKRTLG  60
            M+K +WLKSVVVA+LVL+VGFC NI  GTKV AA ILH++PIN+IF D +LA+ VKR LG
Sbjct  1    MKKKDWLKSVVVAILVLMVGFCANIYFGTKVYAAGILHSIPINEIFQDYGLANAVKRQLG  60

Query  61   KQSVTDVVSQKELDSVQGLNGNESNIKSLEGLQHFNKLEVLFLASNQIKDITPLKNLTNL  120
            KQSVT+VVSQ+ELD +Q LNGN  NIKS+ G++ + +L  L+L+ N+I DI++L +L++L
Sbjct  61   KQSVTEVVSQRELDEIQKLNGNGCNIKSIKGVEYLTNLTKLYLSYNHISDISALASLSQL  120

Query  121  KVLDLKVNQISDLTP---------LY-------------GLKNLTSLDVVYQKIVETPVT  158
             VL LK N++ D+ +         LY             GLKNL  +D   Q   + PV 
Sbjct  121  EVLSLKQNKLKDINSLANLTKLRCLYVSNNQLRDLWALEGLKNLEYVDAEEQTCTNNPVV  180

Query  159  YEPDLVIPVTVKKPDGSLVTPKCITDNGAYIYDDIIWNLPAYKKEVSYKFGERIQVGKVS  218
            Y P +VIP T+K   G  VTP+ I+DNG YI  D+IW+LP+Y  EVSY+F + +++GK  
Sbjct  181  YKPKVVIPNTIKDMSGKSVTPNFISDNGEYINTDVIWELPTYTTEVSYRFKDILNIGKDY  240

Query  219  TTFTGMVKQPL  229
              F+G+V QP+
Sbjct  241  VLFSGVVIQPV  251

5) LIV_0073 in NC_016011


> AJ004808|33|G4|12054730|CAC20609.1|Listeria_ivanovii_ATCC_19119|+|6934..7752|i-inlH|-|internalin 
H
Length=272

 Score =  177 bits (657),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 119/293 (41%), Positives = 181/293 (62%), Gaps = 43/293 (14%)

Query  1    MKKDWMKIFLIGMLVTFIVTCVNTSLETKVQAASIPHPMSIKQIFPDPGLANEVKRSLGK  60
             KKDW+K  ++++LV  +  C N  + TKV AA+I H+++I++IF D GLAN VKR LGK
Sbjct  2    KKKDWLKSVVVAILVLMVGFCANIYFGTKVYAAGILHSIPINEIFQDYGLANAVKRQLGK  61

Query  61   ESVASFVSQEELDEVQKFNGDNCNIQSLEGMQYFTNLKELFLSHNQISDLSPLKDLTkle  120
            +SV+  VSQ ELDE+QK+NG+ CNI+S+ G++Y+TNL  L+LS N+ISD+S+L  L++  
Sbjct  62   QSVTEVVSQRELDEIQKLNGNGCNIKSIKGVEYLTNLTKLYLSYNHISDISALASLSQ--  119

Query  121  elslnrnklkklnGIPSACLERLFVDDNELRDTDSLVHLENLEILSIRKNKLRSIGALCF  180
                               LE L + +N L+D +SL +L           KLR     C 
Sbjct  120  -------------------LEVLSLKQNKLKDINSLANL----------TKLR-----C-  144

Query  181  LPKLEVLDLHGNELRNVSEVRGLKKINWIDLTGQKCVNKPVKYQRELFITNTVKEPDGTL  240
                  L +  N+LR++  + GLK+++ +D   Q C N+PV Y+  + I NT+K+  G  
Sbjct  145  ------LYVSNNQLRDLWALEGLKNLEYVDAEEQTCTNNPVVYKPKVVIPNTIKDMSGKS  198

Query  241  IAPNFISNNGIYVDGCVIWDLPVYMNEVSYTFSELISVGETEAMFDGTVVQPL  293
            ++PNFIS+NG Y++  VIW+LP Y  EVSY F +++++G    +F G V+QP+
Sbjct  199  VTPNFISDNGEYINTDVIWELPTYTTEVSYRFKDILNIGKDYVLFSGVVIQPV  251

6) i-inlF in NC_016011


> AJ004808|33|G4|12054730|CAC20609.1|Listeria_ivanovii_ATCC_19119|+|6934..7752|i-inlH|-|internalin 
H
Length=272

 Score =  170 bits (630),  Expect = 6e-44, Method: Compositional matrix adjust.
 Identities = 126/294 (43%), Positives = 185/294 (63%), Gaps = 43/294 (14%)

Query  1    MRKNDWLKNvlitilvtvfvvcvNMSLETKAQAANIPHPLPINRIFPDPDLAERVKETLK  60
            M+K+DWLK+V+++ILV +   C N+ + TK  AA I H++PIN IF D +LA+ VK  L 
Sbjct  1    MKKKDWLKSVVVAILVLMVGFCANIYFGTKVYAAGILHSIPINEIFQDYGLANAVKRQLG  60

Query  61   KSNVTDVVSQRELDEVQIFNGNGRTIISIDGLQYFTNLKELYLSRNHIRDLTPLKDLTNL  120
            K +VT+VVSQRELDE+Q +NGNG  I SI G++Y+TNL  LYLS NHI D+++L  L++L
Sbjct  61   KQSVTEVVSQRELDEIQKLNGNGCNIKSIKGVEYLTNLTKLYLSYNHISDISALASLSQL  120

Query  121  AILCLDKNRLENLNGIPSNKLVRLSLEDNELTQVDALANLTQLETLFISKNQLKNIDALA  180
             +L L +N+L +                     +++LANLT+L  L++S+NQL+      
Sbjct  121  EVLSLKQNKLKD---------------------INSLANLTKLRCLYVSNNQLR------  153

Query  181  NLTNLKTLDLNRNELEDLSPLARLENLTSLDLANQKCVKEALVYKPKLVIPNTIKGPDKV  240
                            DL +L  L NL  +D  +Q C ++++VYKPK+VIPNTIK+    
Sbjct  154  ----------------DLWALEGLKNLEYVDAEEQTCTNNPVVYKPKVVIPNTIKDMSGK  197

Query  241  LITPSYISDNGSYTNGQLKWNLPVCKEKVCYTFAQLVRVGKTEVVFNGVVIQPL  294
             +TP++ISDNG Y N ++ W+LP     V Y F +++ +GK  V+F+GVVIQP+
Sbjct  198  SVTPNFISDNGEYINTDVIWELPTYTTEVSYRFKDILNIGKDYVLFSGVVIQPV  251

7) i-inlI in NC_016011


> AJ004808|33|G4|12054730|CAC20609.1|Listeria_ivanovii_ATCC_19119|+|6934..7752|i-inlH|-|internalin 
H
Length=272

 Score =  142 bits (524),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 97/233 (42%), Positives = 150/233 (65%), Gaps = 22/233 (9%)

Query  14   VGLCINTGSGTKVQAAKISHPMPINKIFPDPDLANAVKQNLGKKSVTDCVSQRALDKVRK  73
            VG+C N   GTKV AA I H++PIN IF D +LANAVK++LGK+SVT+ VSQR LD ++K
Sbjct  19   VGFCANIYFGTKVYAAGILHSIPINEIFQDYGLANAVKRQLGKQSVTEVVSQRELDEIQK  78

Query  74   FNGIQANIESLEGIQFFTKLEELFLSSNQIKDISPLKDLTELRVLDLKMNEIRDLTPLRG  133
            +NG   NI S+ G++++T+L  L+LS N+I DIS+L  L++L VL LK N ++D+ +L  
Sbjct  79   LNGNGCNIKSIKGVEYLTNLTKLYLSYNHISDISALASLSQLEVLSLKQNKLKDINSLAN  138

Query  134  LSKIT------------WL-----DVTY-----QKIVEDSVPFESDLFIPITVQKIDGSL  171
            L+K+             W      ++ Y     Q   +++V + + + IP T++ + G  
Sbjct  139  LTKLRCLYVSNNQLRDLWALEGLKNLEYVDAEEQTCTNNPVVYKPKVVIPNTIKDMSGKS  198

Query  172  ITPKCITDNGVYMCDGITWNLPGYKKEVSYKFWEYINVGKTRTTFTGMVKQPL  224
            +TP+ I+DNG Y+  ++ W+LP Y  EVSY+F + +N+GK    F+G+V QP+
Sbjct  199  VTPNFISDNGEYINTDVIWELPTYTTEVSYRFKDILNIGKDYVLFSGVVIQPV  251

8) i-inlD in NC_016011


> AJ004808|33|G4|12054730|CAC20609.1|Listeria_ivanovii_ATCC_19119|+|6934..7752|i-inlH|-|internalin 
H
Length=272

 Score =  140 bits (516),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 123/295 (42%), Positives = 183/295 (63%), Gaps = 44/295 (14%)

Query  1    MRKKFWlknvllallltaivvcvNTNLGTKVEAAIIPHPMPIDQIFPDPGLAKAVKEALK  60
            M+KK WLK+V++A+L+  +  C N  +GTKV AA I H++PI++IF D GLA+AVK  L 
Sbjct  1    MKKKDWLKSVVVAILVLMVGFCANIYFGTKVYAAGILHSIPINEIFQDYGLANAVKRQLG  60

Query  61   KRSVTDVVSQRELDGIRKYLYGNDKDIKSLEGLQCLNNLEELHLSRNQISDLSPLKDLAn  120
            K+SVT+VVSQRELD           +I+ L+G  C               ++ ++K++  
Sbjct  61   KQSVTEVVSQRELD-----------EIQKLNGNGC---------------NIKSIKGVEY  94

Query  121  ltllclndnklknlnGIPSAKLVRLLVDGNEITDISSLVHVPQLETLTISKNKLSNIDVL  180
            L                  ++L +L +  N+I+DIS+L  ++QLE L++ +NKL +I+ L
Sbjct  95   L------------------TNLTKLYLSYNHISDISALASLSQLEVLSLKQNKLKDINSL  136

Query  181  AHLTNLRILDLRNNKVRDLSAIGNLKKLTLLDAAFQNCVNEPVAYKANLVIPNTIKGPDG  240
            A+LT+LR L + NN++RDL A+  LK+L  +DA  Q C N+PV YK+++VIPNTIK+  G
Sbjct  137  ANLTKLRCLYVSNNQLRDLWALEGLKNLEYVDAEEQTCTNNPVVYKPKVVIPNTIKDMSG  196

Query  241  ALVLPTDISDNGEYTNGYVKWKLSAYTKEVSYKYARIIEVGEAEGNFTVTVKQPL  295
              V P  ISDNGEY N  V W L++YT EVSY++  I+++G     F+  V QP+
Sbjct  197  KSVTPNFISDNGEYINTDVIWELPTYTTEVSYRFKDILNIGKDYVLFSGVVIQPV  251