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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpA gene of EF514224

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) HrpA2
( YP_234284.1 )

type III helper protein HrpA2

NC_007005
(Pseudomonas syringae B728a)

1e-41

100

2) hrpA2
( YP_273531.1 )

type III helper protein HrpA2

NC_005773
(Pseudomonas syringae 1448A)

2e-39

• Sequence Alignments

1) HrpA2 in NC_007005


> EF514224|31|G27|148562551|ABQ88366.1|Pseudomonas_syringae_pv._syringae_61|-|23319..23645|hrpA|-|HrpA
Length=108

 Score =  162 bits (597),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%)

Query  1    MTIMSSLAGAGRGVVNTIGGAAQGINSVKSSADRNAALVSNTGSTDSIDATRSSISKGDA  60
            MTIMSSLAGAGRGVVNTIGGAAQGINSVKSSADRNAALVSNTGSTDSIDATRSSISKGDA
Sbjct  1    MTIMSSLAGAGRGVVNTIGGAAQGINSVKSSADRNAALVSNTGSTDSIDATRSSISKGDA  60

Query  61   KSAELDGTANEENGLLRESSMLAGFEDKKEALSNQIVASKIRNSVVQF  108
            KSAELDGTANEENGLLRESSMLAGFEDKKEALSNQIVASKIRNSVVQF
Sbjct  61   KSAELDGTANEENGLLRESSMLAGFEDKKEALSNQIVASKIRNSVVQF  108

2) hrpA2 in NC_005773


> EF514224|31|G27|148562551|ABQ88366.1|Pseudomonas_syringae_pv._syringae_61|-|23319..23645|hrpA|-|HrpA
Length=108

 Score =  154 bits (568),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 100/108 (93%), Positives = 103/108 (96%), Gaps = 0/108 (0%)

Query  1    MNIMSSLTNAGRGVVNTVGGAAQGINSVKSSADRNIALTKNTGSTDSIDATRSSISKGDA  60
            M IMSSL+ AGRGVVNT+GGAAQGINSVKSSADRN AL  NTGSTDSIDATRSSISKGDA
Sbjct  1    MTIMSSLAGAGRGVVNTIGGAAQGINSVKSSADRNAALVSNTGSTDSIDATRSSISKGDA  60

Query  61   KSAELDGTANEENGLLRETSMLAGFEDKKEALSNQIVASKIRNSVVQF  108
            KSAELDGTANEENGLLRE+SMLAGFEDKKEALSNQIVASKIRNSVVQF
Sbjct  61   KSAELDGTANEENGLLRESSMLAGFEDKKEALSNQIVASKIRNSVVQF  108