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Homologs of hrpD gene of NC_004578_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpD
( NP_791212.1 )

type III secretion protein HrpD

NC_004578
(Pseudomonas syringae DC3000)

2e-75

100

2) Psyr_1196
( YP_234288.1 )

type III secretion protein HrpD

NC_007005
(Pseudomonas syringae B728a)

4e-56

3) hrpD
( YP_273535.1 )

type III secretion component protein HrpD

NC_005773
(Pseudomonas syringae 1448A)

8e-55

4) Pmen_0027
( YP_001185534.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

2e-31

• Sequence Alignments

1) hrpD in NC_004578


> NC_004578_P1|30|G22|28868593|NP_791212.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|24610..25140|hrpD|PSPTO_1385|type 
III secretion protein HrpD
Length=176

 Score =  275 bits (1027),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 176/176 (100%), Positives = 176/176 (100%), Gaps = 0/176 (0%)

Query  1    MMSLSAEDHWIHWWCNPWQWAHSEWHDRFANARGLSVSDCDALMASRHGVFLQSLGIDPA  60
            MMSLSAEDHWIHWWCNPWQWAHSEWHDRFANARGLSVSDCDALMASRHGVFLQSLGIDPA
Sbjct  1    MMSLSAEDHWIHWWCNPWQWAHSEWHDRFANARGLSVSDCDALMASRHGVFLQSLGIDPA  60

Query  61   QPPAPAEPVLRWLALTPSQREQALSLAQCICFSRNESDGPDGQWCWGLTKALRPGVWLEF  120
            QPPAPAEPVLRWLALTPSQREQALSLAQCICFSRNESDGPDGQWCWGLTKALRPGVWLEF
Sbjct  61   QPPAPAEPVLRWLALTPSQREQALSLAQCICFSRNESDGPDGQWCWGLTKALRPGVWLEF  120

Query  121  EHEDARLLLGAWLGPQYWSRLCLEWPPNEVPDTPGKAPENKLQALWQAIMWRVTAA  176
            EHEDARLLLGAWLGPQYWSRLCLEWPPNEVPDTPGKAPENKLQALWQAIMWRVTAA
Sbjct  121  EHEDARLLLGAWLGPQYWSRLCLEWPPNEVPDTPGKAPENKLQALWQAIMWRVTAA  176

2) Psyr_1196 in NC_007005


> NC_004578_P1|30|G22|28868593|NP_791212.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|24610..25140|hrpD|PSPTO_1385|type 
III secretion protein HrpD
Length=176

 Score =  210 bits (783),  Expect = 4e-56, Method: Compositional matrix adjust.
 Identities = 134/175 (77%), Positives = 155/175 (89%), Gaps = 0/175 (0%)

Query  1    MDLTAEDYWTQWWCNPWPWAHPGWQSRFAERCGLTVSDCEALMVSRHGVFLQSVGIMPSQ  60
            M L+AED W +WWCNPW WAH+ W+ RFA+  GL+VSDC+ALM SRHGVFLQS+GI P+Q
Sbjct  2    MSLSAEDHWIHWWCNPWQWAHSEWHDRFANARGLSVSDCDALMASRHGVFLQSLGIDPAQ  61

Query  61   PPMPAEPVLNWLALTPAQRDQALDLAQRICFSRNESDGDDGQWCWALTKALRPGVWLELE  120
            PP PAEPVL WLALTP+QR+QAL LAQ ICFSRNESDG DGQWCW+LTKALRPGVWLE+E
Sbjct  62   PPAPAEPVLRWLALTPSQREQALSLAQCICFSRNESDGPDGQWCWGLTKALRPGVWLEFE  121

Query  121  HEDARLLLGAWLGPEYWSRLRLAWAPDEVAERPCAAPENKLQTLWQAVLWRVTAA  175
            HEDARLLLGAWLGP+YWSRL L W+P+EV++ P  APENKLQ+LWQA++WRVTAA
Sbjct  122  HEDARLLLGAWLGPQYWSRLCLEWPPNEVPDTPGKAPENKLQALWQAIMWRVTAA  176

3) hrpD in NC_005773


> NC_004578_P1|30|G22|28868593|NP_791212.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|24610..25140|hrpD|PSPTO_1385|type 
III secretion protein HrpD
Length=176

 Score =  206 bits (766),  Expect = 8e-55, Method: Compositional matrix adjust.
 Identities = 130/175 (75%), Positives = 156/175 (90%), Gaps = 0/175 (0%)

Query  1    MELIAEDHWVQWWCNPWQFAHPDWQSRFALNCGLTLSDCDGLIASRHSVFLQSVGIEPDQ  60
            M L AEDHW++WWCNPWQ AH++W+ RFA   GL++SDCD+L+ASRH+VFLQS+GI+P Q
Sbjct  2    MSLSAEDHWIHWWCNPWQWAHSEWHDRFANARGLSVSDCDALMASRHGVFLQSLGIDPAQ  61

Query  61   PPMPAEPVLRWLALTPLQRERALDLARRICFCRNESDGADGQWCWALTKALRPGVWLELA  120
            PP PAEPVLRWLALTP QRE+AL LA+ ICF RNESDG+DGQWCW+LTKALRPGVWLE+ 
Sbjct  62   PPAPAEPVLRWLALTPSQREQALSLAQCICFSRNESDGPDGQWCWGLTKALRPGVWLEFE  121

Query  121  NEDPRLLLGAWLGPEYWSRLRLAWAPDELPDSPCEAPENKLQTLWQAILWRVTAV  175
            +ED+RLLLGAWLGP+YWSRL L W+P+E+PD+P  APENKLQ+LWQAI+WRVTA 
Sbjct  122  HEDARLLLGAWLGPQYWSRLCLEWPPNEVPDTPGKAPENKLQALWQAIMWRVTAA  176

4) Pmen_0027 in NC_009439


> NC_004578_P1|30|G22|28868593|NP_791212.1|Pseudomonas_syringae_pv._tomato_str._DC3000|+|24610..25140|hrpD|PSPTO_1385|type 
III secretion protein HrpD
Length=176

 Score =  128 bits (470),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 77/172 (45%), Positives = 120/172 (70%), Gaps = 7/172 (4%)

Query  3    DAAERWVRWWCEAWHFAHPGW--RRSSPVLAAAADCSH---SRHAALAQSLGIGATQPPP  57
             A ++W++WWC++W+ AH+ W  R +++   + +DC     SRH+ + QSLGI+++QPP+
Sbjct  5    SAEDHWIHWWCNPWQWAHSEWHDRFANARGLSVSDCDALMASRHGVFLQSLGIDPAQPPA  64

Query  58   PHEGVLQWLALNERQRQHALALAQHICSAKAPCQALPADADWCRSLGKALRPGLWLTAEA  117
            P E VL+WLAL   QR++AL+LAQ IC ++   ++  +D++WC++L KALRPG+WL  E 
Sbjct  65   PAEPVLRWLALTPSQREQALSLAQCICFSRNESDG--PDGQWCWGLTKALRPGVWLEFEH  122

Query  118  TDPRLLLGAWAGPACWERLRLQWAPGSLEELPPDLPARRLATLWAAVLWRTS  169
             D+RLLLGAW GP  W RL L+W+P  + + P   P  +L +LW A++WR +
Sbjct  123  EDARLLLGAWLGPQYWSRLCLEWPPNEVPDTPGKAPENKLQALWQAIMWRVT  174