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Homologs of spaQ gene of NC_003197_P3

130

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) spaQ
( NP_902293.1 )

surface presentation of antigens secretory protein

NC_005085
(Chromobacterium violaceum ATCC 12472)

6e-30

2) SE451236_20540
( YP_008267095.1 )

type III secretion system protein SpaQ

NC_021820
(Salmonella enterica 08-1736)

3e-27

100

3) spaQ
( YP_005238998.1 )

needle complex export protein

NC_016856
(Salmonella enterica 14028S)

3e-27

100

4) spaQ
( YP_002227633.1 )

virulence associated secretory protein

NC_011274
(Salmonella enterica 287/91)

3e-27

100

5) SBOV29151
( YP_008506737.1 )

secretory protein (associated with virulence)

NC_022241
(Salmonella enterica 3114)

3e-27

100

6) SEEH1578_23255
( YP_008248697.1 )

type III secretion system protein SpaQ

NC_021810
(Salmonella enterica 41578)

3e-27

100

7) spaQ
( YP_005398252.1 )

type III secretion system secretory apparatus

NC_017046
(Salmonella enterica 798)

3e-27

100

8) SSPA2561
( YP_002143406.1 )

virulence secretory protein

NC_011147
(Salmonella enterica AKU12601)

3e-27

100

9) spaQ
( YP_151916.1 )

secretory protein (associated with virulence)

NC_006511
(Salmonella enterica ATCC 9150)

3e-27

100

10) SU5_03370
( YP_006088977.1 )

surface presentation of antigens, secretory proteins

NC_017623
(Salmonella enterica B182)

3e-27

100

11) spaQ
( YP_008482452.1 )

secretory protein

NC_022221
(Salmonella enterica CDC1983-67)

3e-27

100

12) SEEB0189_05725
( YP_008307496.1 )

type III secretion system protein SpaQ

NC_021844
(Salmonella enterica CFSAN000189)

3e-27

100

13) CFSAN001921_02630
( YP_008253934.1 )

type III secretion system protein SpaQ

NC_021814
(Salmonella enterica CFSAN001921)

3e-27

100

14) CFSAN001992_19080
( YP_007473532.1 )

type III secretion system protein SpaQ

NC_020307
(Salmonella enterica CFSAN001992)

3e-27

100

15) CFSAN002050_20745
( YP_008262020.1 )

type III secretion system protein SpaQ

NC_021818
(Salmonella enterica CFSAN002050)

3e-27

100

16) CFSAN002069_17825
( YP_008252325.1 )

type III secretion system protein SpaQ

NC_021812
(Salmonella enterica CFSAN002069)

3e-27

100

17) spaQ
( NP_457283.1 )

secretory protein (associated with virulence)

NC_003198
(Salmonella enterica CT18)

3e-27

100

18) SeD_A3199
( YP_002216858.1 )

hypothetical protein

NC_011205
(Salmonella enterica CT_02021853)

3e-27

100

19) SeSA_A3042
( YP_002115841.1 )

protein EpaQ

NC_011094
(Salmonella enterica CVM19633)

3e-27

100

20) STMMW_28511
( YP_005233878.1 )

secretory protein (associated with virulence)

NC_016854
(Salmonella enterica D23580)

3e-27

100

21) spaQ
( NP_461810.1 )

needle complex export protein

NC_003197
(Salmonella enterica LT2)

3e-27

100

22) STBHUCCB_29350
( YP_005218435.1 )

Surface presentation of antigens protein SpaQ

NC_016832
(Salmonella enterica P-stx-12)

3e-27

100

23) spaQ
( YP_002244802.1 )

secretory protein

NC_011294
(Salmonella enterica P125109)

3e-27

100

24) spaQ
( YP_002638465.1 )

virulence associated secretory protein

NC_012125
(Salmonella enterica RKS4594)

3e-27

100

25) spaQ
( YP_005213997.1 )

secretory protein (associated with virulence)

NC_016831
(Salmonella enterica RKS5078)

3e-27

100

26) SARI_00084
( YP_001569179.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

3e-27

100

27) I137_13755
( YP_008382152.1 )

type III secretion system protein SpaQ

NC_021984
(Salmonella enterica S06004)

3e-27

100

28) spaQ
( YP_217808.1 )

surface presentation of antigens; secretory proteins

NC_006905
(Salmonella enterica SC-B67)

3e-27

100

29) SPAB_03592
( YP_001589766.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

3e-27

100

30) spaQ
( YP_005182757.1 )

type III secretion system secretory apparatus

NC_016810
(Salmonella enterica SL1344)

3e-27

100

31) SNSL254_A3094
( YP_002042130.1 )

hypothetical protein

NC_011080
(Salmonella enterica SL254)

3e-27

100

32) SeHA_C3079
( YP_002046849.1 )

secretory protein EpaQ

NC_011083
(Salmonella enterica SL476)

3e-27

100

33) SeAg_B3011
( YP_002147786.1 )

protein EpaQ

NC_011149
(Salmonella enterica SL483)

3e-27

100

34) spaq
( YP_005243870.1 )

Surface presentation of antigens protein SpaQ

NC_016857
(Salmonella enterica ST4/74)

3e-27

100

35) STMDT12_C29380
( YP_005248634.1 )

protein EpaQ

NC_016860
(Salmonella enterica T000240)

3e-27

100

36) spaQ
( NP_806492.1 )

virulence-associated secretory protein

NC_004631
(Salmonella enterica Ty2)

3e-27

100

37) TY21A_14100
( YP_007927062.1 )

EpaQ

NC_021176
(Salmonella enterica Ty21a)

3e-27

100

38) STU288_14600
( YP_007904011.1 )

type III secretion system protein SpaQ

NC_021151
(Salmonella enterica U288)

3e-27

100

39) spaQ
( YP_005253378.1 )

needle complex export protein

NC_016863
(Salmonella enterica UK-1)

3e-27

100

40) SN31241_39810
( YP_008361896.1 )

Surface presentation of antigens protein SpaQ

NC_021902
(Salmonella enterica USMARC-S3124.1)

3e-27

100

41) A464_2913
( YP_008323507.1 )

Type III secretion inner membrane protein

NC_021870
(Salmonella bongori N268-08)

4e-27

42) spaQ
( YP_004731329.1 )

virulence associated secretory protein

NC_015761
(Salmonella bongori NCTC 12419)

4e-27

43) fliQ
( YP_008112707.1 )

flagellar biosynthetic protein FliQ

NC_021505
(Pseudomonas putida NBRC 14164)

2e-26

44) spaQ
( YP_007030624.1 )

surface presentation of antigens protein

NC_019670
(Pseudomonas sp. UW4)

1e-25

45) spaQ
( YP_005207206.1 )

protein SpaQ

NC_016830
(Pseudomonas fluorescens F113)

2e-25

46) epaQ
( YP_006097358.1 )

type III secretion system protein

NC_017626
(Escherichia coli 042)

6e-23

47) ECO111_3597
( YP_003235941.1 )

type III secretion protein EpaQ

NC_013364
(Escherichia coli 11128)

6e-23

48) ECO26_3940
( YP_003230867.1 )

type III secretion protein EpaQ

NC_013361
(Escherichia coli 11368)

6e-23

49) EcolC_0847
( YP_001723846.1 )

HrpO family type III secretion protein

NC_010468
(Escherichia coli ATCC 8739)

6e-23

50) epaQ
( YP_006145308.1 )

type III secretion protein EpaQ

NC_017646
(Escherichia coli CE10)

6e-23

51) epaQ
( YP_001464196.1 )

type III secretion apparatus protein EpaQ

NC_009801
(Escherichia coli E24377A)

6e-23

52) epaQ
( YP_002272330.1 )

type III secretion apparatus protein EpaQ

NC_011353
(Escherichia coli EC4115)

6e-23

53) Z4188
( NP_289421.1 )

type III secretion apparatus protein

NC_002655
(Escherichia coli EDL933)

6e-23

54) ETEC_3054
( YP_006116601.1 )

type III secretion system protein

NC_017633
(Escherichia coli ETEC H10407)

6e-23

55) epaQ
( YP_001459637.1 )

type III secretion apparatus protein EpaQ

NC_009800
(Escherichia coli HS)

6e-23

56) epaQ
( YP_006169966.1 )

Type III secretion apparatus protein

NC_017663
(Escherichia coli P12b)

6e-23

57) ECs3724
( NP_311751.1 )

EpaQ

NC_002695
(Escherichia coli Sakai)

6e-23

58) epaQ
( YP_003079642.1 )

type III secretion apparatus protein

NC_013008
(Escherichia coli TW14359)

6e-23

59) UMNK88_3552
( YP_006135253.1 )

Type III secretion apparatus protein EpaQ

NC_017641
(Escherichia coli UMNK88)

6e-23

60) CDCO157_3477
( YP_006314344.1 )

protein EpaQ

NC_017906
(Escherichia coli Xuzhou21)

6e-23

61) ECO103_3429
( YP_003223302.1 )

type III secretion protein EpaQ

NC_013353
(Escherichia coli 12009)

8e-23

62) O3M_05210
( YP_006768714.1 )

type III secretion protein EpaQ

NC_018650
(Escherichia coli 2009EL-2050)

8e-23

63) O3O_20480
( YP_006782821.1 )

type III secretion protein EpaQ

NC_018661
(Escherichia coli 2009EL-2071)

8e-23

64) O3K_05165
( YP_006777751.1 )

type III secretion protein EpaQ

NC_018658
(Escherichia coli 2011C-3493)

8e-23

65) APECO78_17970
( YP_007382759.1 )

type III secretion protein EpaQ

NC_020163
(Escherichia coli APEC O78)

8e-23

66) spaQ
( YP_002413880.1 )

surface presentation of antigens protein

NC_011751
(Escherichia coli UMN026)

1e-22

67) spaQ
( YP_002924279.1 )

type III needle complex export protein

NC_012751
(Candidatus Hamiltonella defensa T5A)

1e-19

68) SG2083
( YP_455763.1 )

type III secretion apparatus SpaQ

NC_007712
(Sodalis glossinidius morsitans)

3e-19

69) ysaS
( YP_001007697.1 )

type III secretion apparatus protein

NC_008800
(Yersinia enterocolitica 8081)

7e-19

70) S70_09790
( YP_006216509.1 )

type III secretion apparatus protein

NC_017731
(Providencia stuartii MRSN 2154)

3e-18

71) LY180_14715
( YP_008566009.1 )

type III secretion protein

NC_022364
(Escherichia coli LY180)

2e-16

72) ECSE_3125
( YP_002294400.1 )

putative type III secretion protein

NC_011415
(Escherichia coli SE11)

2e-16

73) WFL_15200
( YP_006174475.1 )

surface presentation of antigens protein

NC_017664
(Escherichia coli W)

2e-16

74) DvMF_2414
( YP_002436823.1 )

type III secretion protein, HrpO family

NC_011769
(Desulfovibrio vulgaris Miyazaki F)

5e-16

75) EAM_2658
( YP_003539725.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

2e-15

76) spaQ1
( YP_003530144.1 )

surface presentation of antigens protein spaQ

NC_013961
(Erwinia amylovora CFBP1430)

2e-15

77) Dvul_3009
( YP_961208.1 )

HrpO family type III secretion protein

NC_008741
(Desulfovibrio vulgaris DP4)

2e-15

78) invX
( YP_009143.1 )

HrpO family type III secretion protein

NC_005863
(Desulfovibrio vulgaris Hildenborough)

2e-15

79) Deval_3199
( YP_005703978.1 )

type III secretion protein, HrpO family

NC_017311
(Desulfovibrio vulgaris RCH1)

2e-15

80) spaQ
( YP_001908606.1 )

type III secretion apparatus

NC_010694
(Erwinia tasmaniensis Et1/99)

2e-15

81) yscS
( YP_594924.1 )

translocation protein in type III secretion

NC_008011
(Lawsonia intracellularis PHE/MN1-00)

4e-14

82) sctS
( YP_007365650.1 )

type III secretion system protein

NC_020127
(Lawsonia intracellularis N343)

5e-14

83) SG0570
( YP_454250.1 )

type III secretion apparatus SpaQ

NC_007712
(Sodalis glossinidius morsitans)

3e-11

84) spaQ
( YP_005802896.1 )

surface presentation of antigens protein spaQ

NC_017390
(Erwinia pyrifoliae DSM 12163)

5e-11

85) spaQ
( YP_002648993.1 )

type III secretion apparatus

NC_012214
(Erwinia pyrifoliae Ep1/96)

5e-11

86) MU9_27
( YP_007503446.1 )

Type III secretion inner membrane protein

NC_020418
(Morganella morganii KT)

6e-10

87) xsaX
( YP_003375995.1 )

xanthomonas secretion apparatus protein

NC_013722
(Xanthomonas albilineans GPE PC73)

1e-09

88) ascS
( YP_001144303.1 )

AscS protein

NC_009350
(Aeromonas salmonicida A449)

1e-09

89) Ser39006_2920
( YP_008523302.1 )

type III secretion protein, HrpO family

NC_022268
(Serratia sp. ATCC 39006)

4e-09

90) HCH_03262
( YP_434446.1 )

type III secretory pathway subunit EscS

NC_007645
(Hahella chejuensis KCTC 2396)

9e-09

91) CPE3_0899
( YP_008584030.1 )

type III secretion system protein

NC_022441
(Chlamydia pecorum P787)

1e-08

92) CPE1_0898
( YP_008582180.1 )

type III secretion system protein

NC_022439
(Chlamydia pecorum PV3056/3)

1e-08

93) CPE2_0899
( YP_008583105.1 )

type III secretion system protein

NC_022440
(Chlamydia pecorum W73)

1e-08

94) sctS
( YP_003039884.1 )

type iii secretion component protein scts

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

1e-08

95) sctS
( NP_930978.1 )

Type III secretion component protein SctS

NC_005126
(Photorhabdus luminescens TTO1)

2e-08

96) Mlg_0979
( YP_741822.1 )

flagellar biosynthetic protein FliQ

NC_008340
(Alkalilimnicola ehrlichii MLHE-1)

2e-08

97) SbBS512_A0188
( YP_001883217.1 )

Spa9

NC_010660
(Shigella boydii CDC 3083-94)

3e-08

98) spa9
( YP_001449235.1 )

Spa9

NC_007607
(Shigella dysenteriae Sd197)

3e-08

99) spa9
( YP_005712046.1 )

Spa9, component of the Mxi-Spa secretion machinery

NC_017319
(Shigella flexneri 2002017)

3e-08

100) spa9
( NP_858287.1 )

Mxi-Spa secretion machinery protein Spa9

NC_004851
(Shigella flexneri 301)

3e-08

101) spa9
( YP_001449233.1 )

Spa9

NC_007385
(Shigella sonnei Ss046)

3e-08

102) NH44784_014531
( YP_008028548.1 )

Type III secretion inner membrane protein (YscS,homologous to flagellar export components

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

5e-07

103) Slit_0587
( YP_003523214.1 )

flagellar biosynthetic protein FliQ

NC_013959
(Sideroxydans lithotrophicus ES-1)

7e-07

104) D781_3937
( YP_007346312.1 )

type III secretion protein, HrpO family

NC_020064
(Serratia marcescens FGI94)

1e-06

105) hscS
( YP_003811250.1 )

type III secretory pathway protein

NC_014366
(gamma proteobacterium HdN1)

1e-06

106) bscS
( YP_006967887.1 )

type III secretion protein

NC_019382
(Bordetella bronchiseptica 253)

2e-06

107) bscS
( YP_006899834.1 )

type III secretion protein

NC_018829
(Bordetella bronchiseptica MO149)

2e-06

108) bscS
( NP_888178.1 )

type III secretion protein

NC_002927
(Bordetella bronchiseptica RB50)

2e-06

109) bscS
( NP_884487.1 )

type III secretion protein

NC_002928
(Bordetella parapertussis 12822)

2e-06

110) bscS
( YP_006895377.1 )

type III secretion protein

NC_018828
(Bordetella parapertussis Bpp5)

2e-06

111) bscS
( YP_006625538.1 )

type III secretion protein

NC_018518
(Bordetella pertussis 18323)

3e-06

112) bscS
( YP_005590273.1 )

putative type III secretion protein

NC_017223
(Bordetella pertussis CS)

3e-06

113) bscS
( NP_880883.1 )

type III secretion protein

NC_002929
(Bordetella pertussis Tohama I)

3e-06

114) yscS
( YP_005082208.1 )

Yop proteins translocation protein S

NC_016642
(Pseudovibrio sp. FO-BEG1)

9e-06

115) PSEBR_a5381
( YP_004356891.1 )

type III secretion protein

NC_015379
(Pseudomonas brassicacearum NFM421)

1e-05

116) hrcS
( YP_005210968.1 )

protein HrcS

NC_016830
(Pseudomonas fluorescens F113)

1e-05

117) hrcS
( YP_273543.1 )

type III secretion component protein HrcS

NC_005773
(Pseudomonas syringae 1448A)

3e-05

118) fliQ
( YP_007186374.1 )

flagellar biosynthesis protein FliQ

NC_019842
(Bacillus amyloliquefaciens AS43.3)

3e-04

119) fliQ
( YP_005130320.1 )

Flagellar biosynthetic protein fliQ

NC_016784
(Bacillus amyloliquefaciens CAU B946)

3e-04

120) fliQ
( YP_001421214.1 )

flagellar biosynthesis protein FliQ

NC_009725
(Bacillus amyloliquefaciens FZB42)

3e-04

121) fliQ
( YP_007445622.1 )

flagellar biosynthesis protein FliQ

NC_020272
(Bacillus amyloliquefaciens IT-45)

3e-04

122) fliQ
( YP_005420927.1 )

Flagellar biosynthetic protein fliQ

NC_017061
(Bacillus amyloliquefaciens YAU B9601-Y2)

3e-04

123) fliQ
( YP_008412592.1 )

component of the flagellar export machinery

NC_022075
(Bacillus amyloliquefaciens UCMB-5033)

3e-04

124) fliQ
( YP_007497266.1 )

component of the flagellar export machinery

NC_020410
(Bacillus amyloliquefaciens UCMB5036)

3e-04

125) fliQ
( YP_008421002.1 )

component of the flagellar export machinery

NC_022081
(Bacillus amyloliquefaciens UCMB5113)

3e-04

126) Meso_0111
( YP_672681.1 )

export protein FliQ

NC_008254
(Chelativorans sp. BNC1)

5e-04

127) Rfer_0561
( YP_521843.1 )

flagellar biosynthetic protein FliQ

NC_007908
(Rhodoferax ferrireducens T118)

0.001

128) fliQ
( YP_412051.1 )

flagellar biosynthesis protein FliQ

NC_007614
(Nitrosospira multiformis ATCC 25196)

0.004

129) fliQ
( YP_006913525.1 )

Flagellar biosynthesis protein FliQ

NC_018867
(Dehalobacter sp. CF)

0.009

130) fliQ
( YP_006910536.1 )

Flagellar biosynthesis protein FliQ

NC_018866
(Dehalobacter sp. DCA)

0.009

• Sequence Alignments

1) spaQ in NC_005085


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  124 bits (452),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 72/86 (84%), Positives = 82/86 (96%), Gaps = 0/86 (0%)

Query  1   MNDLVFAGNKALYLVLMMSAWPIIVATVIGLLVGLFQTVTQLQEQTLPFGIKLLGVSVCL  60
           M+DLVFAGNKALYLVL++S+WP IVAT+IGLLVGLFQTVTQLQEQTLPFGIKLLGV +CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLLSGWYGETLLAFGREVMRLALAKG  86
           FLLSGWYGE LL++GR+V+ LALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

2) SARI_00084 in NC_010067


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

3) SE451236_20540 in NC_021820


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

4) SeAg_B3011 in NC_011149


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

5) SEEB0189_05725 in NC_021844


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

6) SBOV29151 in NC_022241


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

7) spaQ in NC_006905


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

8) CFSAN002050_20745 in NC_021818


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

9) SeD_A3199 in NC_011205


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

10) spaQ in NC_011294


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

11) spaQ in NC_011274


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

12) spaQ in NC_022221


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

13) spaQ in NC_016831


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

14) SEEH1578_23255 in NC_021810


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

15) SU5_03370 in NC_017623


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

16) CFSAN002069_17825 in NC_021812


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

17) SeHA_C3079 in NC_011083


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

18) CFSAN001992_19080 in NC_020307


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

19) SNSL254_A3094 in NC_011080


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

20) SN31241_39810 in NC_021902


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

21) SSPA2561 in NC_011147


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

22) spaQ in NC_006511


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

23) SPAB_03592 in NC_010102


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

24) spaQ in NC_012125


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

25) I137_13755 in NC_021984


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

26) SeSA_A3042 in NC_011094


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

27) spaQ in NC_003198


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

28) spaQ in NC_016856


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

29) spaQ in NC_017046


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

30) STMMW_28511 in NC_016854


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

31) spaQ in NC_003197


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

32) spaQ in NC_016810


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

33) spaq in NC_016857


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

34) STMDT12_C29380 in NC_016860


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

35) STU288_14600 in NC_021151


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

36) spaQ in NC_016863


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

37) CFSAN001921_02630 in NC_021814


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

38) STBHUCCB_29350 in NC_016832


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

39) TY21A_14100 in NC_021176


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

40) spaQ in NC_004631


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

41) spaQ in NC_015761


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  114 bits (417),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 85/86 (99%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATVIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVAT+IGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

42) A464_2913 in NC_021870


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  114 bits (417),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 85/86 (99%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  1   MDDLVFAGNKALYLVLILSGWPTIVATVIGLLVGLFQTVTQLQEQTLPFGIKllgvclcl  60
           MDDLVFAGNKALYLVLILSGWPTIVAT+IGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGEVLLSYGRQVIFLALAKG  86
           FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

43) fliQ in NC_021505


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  112 bits (408),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 62/83 (75%), Positives = 78/83 (94%), Gaps = 0/83 (0%)

Query  1   MNDLVFAGNQTLYLILILVAWPIIVATLVGLLIGLFQTVTQLQEQTLPFGFKLLAVSICL  60
           M+DLVFAGN++LYL+LIL +WP IVAT++GLL+GLFQTVTQLQEQTLPFG+KLL+V +CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLLSGWYGETLLGFSREVMRLAL  83
           FLLSGWYGE LL+++R+V+ LAL
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

44) spaQ in NC_019670


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  109 bits (397),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 61/84 (73%), Positives = 77/84 (92%), Gaps = 0/84 (0%)

Query  1   MNDLVYAGNKTLYLILLMVAWPIIVATVVGLVVGLIQTVTQLQEQTLPFGFKLLAVAACL  60
           M+DLV+AGNK+LYL+L++ +WP IVAT++GL+VGL+QTVTQLQEQTLPFG+KLL+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLLSGWYGETLLDFSREVIRLALA  84
           FLLSGWYGE LL ++R+VI LALA
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALA  84

45) spaQ in NC_016830


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  109 bits (396),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 60/84 (72%), Positives = 77/84 (92%), Gaps = 0/84 (0%)

Query  1   MNDLVYAGNKTLYLILLMVAWPIIVATVVGLVVGLIQTVTQLQEQTLPFGFKLLAVAACL  60
           M+DLV+AGNK+LYL+L++ +WP IVAT++GL+VGL+QTVTQLQEQTLPFG+KLL+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLLSGWYGETLLDFSREVIRLALS  84
           FLLSGWYGE LL ++R+VI LAL+
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALA  84

46) epaQ in NC_017626


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

47) EcolC_0847 in NC_010468


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

48) epaQ in NC_009801


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

49) ETEC_3054 in NC_017633


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

50) epaQ in NC_009800


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

51) ECO111_3597 in NC_013364


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

52) epaQ in NC_011353


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

53) Z4188 in NC_002655


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

54) ECs3724 in NC_002695


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

55) epaQ in NC_013008


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

56) ECO26_3940 in NC_013361


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

57) epaQ in NC_017646


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

58) epaQ in NC_017663


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

59) UMNK88_3552 in NC_017641


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

60) CDCO157_3477 in NC_017906


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

61) ECO103_3429 in NC_013353


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (361),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIEVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

62) APECO78_17970 in NC_020163


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (361),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 58/86 (68%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MNDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           M+D+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

63) O3M_05210 in NC_018650


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (361),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 58/86 (68%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MNDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           M+D+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

64) O3O_20480 in NC_018661


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (361),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 58/86 (68%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MNDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           M+D+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

65) O3K_05165 in NC_018658


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score =  100 bits (361),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 58/86 (68%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  1   MNDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           M+D+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FLMSGWYGEKLYSFGIEMLNLAFARG  86
           FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

66) spaQ in NC_011751


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 59/86 (69%), Positives = 77/86 (90%), Gaps = 0/86 (0%)

Query  30   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  89
            MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1    MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  90   FLMSGWYGEKLYSFGIEMLNLAFARG  115
            FL+SGWYGE L S+G +++ LA+A+G
Sbjct  61   FLLSGWYGEVLLSYGRQVIFLALAKG  86

67) spaQ in NC_012751


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 89.9 bits (322),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 61/85 (72%), Positives = 76/85 (90%), Gaps = 0/85 (0%)

Query  1   MNDLVFAGNKALYLILTLSAIPVAVATAVGLIIGLIQTVTQLQEQTLPFGIKllsvslcl  60
           M+DLVFAGNKALYL+L LS+ P  VAT +GL++GL+QTVTQLQEQTLPFGIKLL+V LCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllAGWYGDTLLAYAREVIGIALRR  85
           FLL+GWYG+ LL+Y+R+VI +AL +
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAK  85

68) SG2083 in NC_007712


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 88.4 bits (316),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 61/86 (71%), Positives = 79/86 (92%), Gaps = 0/86 (0%)

Query  1   MNNLLFAGNKALYLVLMMAAGPIIVATLVGLLVGLFQTVLQLQEQTLPFGIKllsvtlcl  60
           M++L+FAGNKALYLVL++++ P IVAT++GLLVGLFQTV QLQEQTLPFGIKLL+V LCL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  fllSGWYGETLLQFSHEVIRMALGRS  86
           FLLSGWYGE LL ++++VI +AL+++
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

69) ysaS in NC_008800


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 87.3 bits (312),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 45/86 (53%), Positives = 75/86 (88%), Gaps = 0/86 (0%)

Query  1   MENIIYASNKAMLLIVLLSAIPVMVATVVGLLIGLIQTVTQLQEQTLPFGIKLLAVFGSL  60
           M+++++A+NKA+ L+++LS+ P +VAT++GLL+GL+QTVTQLQEQTLPFGIKLL+V   L
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FMISGWLSDKVMNYATEVLAIALSPA  86
           F++SGW ++ +++Y+ +V+ +AL+ +
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLALAKG  86

70) S70_09790 in NC_017731


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 85.2 bits (304),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 45/79 (57%), Positives = 70/79 (89%), Gaps = 0/79 (0%)

Query  1   MDEIIYSSNKAMLLIVMLSAIPVIVATVVGLLVGLIQTVTQLQEQTLPFGIKLLAVFGSL  60
           MD++++++NKA+ L+++LS+ P IVAT++GLLVGL+QTVTQLQEQTLPFGIKLL+V   L
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FMISGWLADKVMNYALEVL  79
           F++SGW ++ +++Y+ +V+
Sbjct  61  FLLSGWYGEVLLSYGRQVI  79

71) BPC006_II2060 in NC_018529


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 83.9 bits (299),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 45/83 (55%), Positives = 68/83 (82%), Gaps = 0/83 (0%)

Query  14  MAELTYAGDKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCL  73
           M +L +AG+KA+ LV++L + P  VAT++GL +GLFQTVTQLQEQTLPFG+K+L+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  74  MMLSGWFGGKLLAFATEMLSIGL  96
            +LSGW+G  LL+++ +++ ++L
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

72) bsaX in NC_006349


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 83.4 bits (297),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 45/83 (55%), Positives = 68/83 (82%), Gaps = 0/83 (0%)

Query  1   MAELTYAGDKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCL  60
           M +L +AG+KA+ LV++L + P  VAT++GL +GLFQTVTQLQEQTLPFG+K+L+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  MMLSGWFGGKLLAFATEMLSIGL  83
            +LSGW+G  LL+++ +++ ++L
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

73) bsaX in NC_008835


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 83.4 bits (297),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 45/83 (55%), Positives = 68/83 (82%), Gaps = 0/83 (0%)

Query  1   MAELTYAGDKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCL  60
           M +L +AG+KA+ LV++L + P  VAT++GL +GLFQTVTQLQEQTLPFG+K+L+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  MMLSGWFGGKLLAFATEMLSIGL  83
            +LSGW+G  LL+++ +++ ++L
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

74) bsaX in NC_009079


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 83.4 bits (297),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 45/83 (55%), Positives = 68/83 (82%), Gaps = 0/83 (0%)

Query  1   MAELTYAGDKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCL  60
           M +L +AG+KA+ LV++L + P  VAT++GL +GLFQTVTQLQEQTLPFG+K+L+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  MMLSGWFGGKLLAFATEMLSIGL  83
            +LSGW+G  LL+++ +++ ++L
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

75) bsaX in NC_017832


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 83.4 bits (297),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 45/83 (55%), Positives = 68/83 (82%), Gaps = 0/83 (0%)

Query  1   MAELTYAGDKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCL  60
           M +L +AG+KA+ LV++L + P  VAT++GL +GLFQTVTQLQEQTLPFG+K+L+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  MMLSGWFGGKLLAFATEMLSIGL  83
            +LSGW+G  LL+++ +++ ++L
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

76) BURPS1106A_A2078 in NC_009078


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 83.4 bits (297),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 45/83 (55%), Positives = 68/83 (82%), Gaps = 0/83 (0%)

Query  1   MAELTYAGDKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCL  60
           M +L +AG+KA+ LV++L + P  VAT++GL +GLFQTVTQLQEQTLPFG+K+L+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  MMLSGWFGGKLLAFATEMLSIGL  83
            +LSGW+G  LL+++ +++ ++L
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

77) bsaX in NC_007435


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 83.4 bits (297),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 45/83 (55%), Positives = 68/83 (82%), Gaps = 0/83 (0%)

Query  1   MAELTYAGDKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCL  60
           M +L +AG+KA+ LV++L + P  VAT++GL +GLFQTVTQLQEQTLPFG+K+L+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  MMLSGWFGGKLLAFATEMLSIGL  83
            +LSGW+G  LL+++ +++ ++L
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

78) BURPS668_A2166 in NC_009075


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 83.4 bits (297),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 45/83 (55%), Positives = 68/83 (82%), Gaps = 0/83 (0%)

Query  1   MAELTYAGDKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCL  60
           M +L +AG+KA+ LV++L + P  VAT++GL +GLFQTVTQLQEQTLPFG+K+L+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  MMLSGWFGGKLLAFATEMLSIGL  83
            +LSGW+G  LL+++ +++ ++L
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

79) bsaX in NC_006351


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 83.4 bits (297),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 45/83 (55%), Positives = 68/83 (82%), Gaps = 0/83 (0%)

Query  1   MAELTYAGDKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCL  60
           M +L +AG+KA+ LV++L + P  VAT++GL +GLFQTVTQLQEQTLPFG+K+L+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  MMLSGWFGGKLLAFATEMLSIGL  83
            +LSGW+G  LL+++ +++ ++L
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

80) BDL_4845 in NC_021877


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 83.4 bits (297),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 45/83 (55%), Positives = 68/83 (82%), Gaps = 0/83 (0%)

Query  1   MAELTYAGDKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCL  60
           M +L +AG+KA+ LV++L + P  VAT++GL +GLFQTVTQLQEQTLPFG+K+L+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  MMLSGWFGGKLLAFATEMLSIGL  83
            +LSGW+G  LL+++ +++ ++L
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

81) BTH_II0837 in NC_007650


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 83.4 bits (297),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 45/83 (55%), Positives = 68/83 (82%), Gaps = 0/83 (0%)

Query  1   MAELTYAGDKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCL  60
           M +L +AG+KA+ LV++L + P  VAT++GL +GLFQTVTQLQEQTLPFG+K+L+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  MMLSGWFGGKLLAFATEMLSIGL  83
            +LSGW+G  LL+++ +++ ++L
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

82) BTI_4015 in NC_021174


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 83.4 bits (297),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 45/83 (55%), Positives = 68/83 (82%), Gaps = 0/83 (0%)

Query  1   MAELTYAGDKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCL  60
           M +L +AG+KA+ LV++L + P  VAT++GL +GLFQTVTQLQEQTLPFG+K+L+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  MMLSGWFGGKLLAFATEMLSIGL  83
            +LSGW+G  LL+++ +++ ++L
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

83) LY180_14715 in NC_022364


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 78.9 bits (280),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 45/61 (74%), Positives = 56/61 (92%), Gaps = 0/61 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  F  61
           F
Sbjct  61  F  61

84) ECSE_3125 in NC_011415


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 78.9 bits (280),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 45/61 (74%), Positives = 56/61 (92%), Gaps = 0/61 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  F  61
           F
Sbjct  61  F  61

85) WFL_15200 in NC_017664


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 78.9 bits (280),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 45/61 (74%), Positives = 56/61 (92%), Gaps = 0/61 (0%)

Query  1   MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF  60
           MDD+VFAGN+ALYL+L++S+ P  VAT++GLLVGLFQTVTQLQEQTLPFG+KLL V +C+
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  F  61
           F
Sbjct  61  F  61

86) DvMF_2414 in NC_011769


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 77.6 bits (275),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 40/79 (51%), Positives = 63/79 (80%), Gaps = 1/79 (1%)

Query  1   MESMAMTYAVKALYLVLMLSMPPIVVASVIGILISLVQAITQLQEQTLTFGVKLIAVVLT  60
           M+ +  + + KALYLVL+LS  P +VA++IG+L++L Q++TQLQEQTL FG+KL++V L 
Sbjct  1   MDDLVFA-GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLC  59

Query  61  LFLMGGWFGAELLRFADEI  79
           LFL++GW+G  LL ++ ++
Sbjct  60  LFLLSGWYGEVLLSYGRQV  78

87) EAM_2658 in NC_013971


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 76.0 bits (269),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 37/83 (45%), Positives = 66/83 (80%), Gaps = 0/83 (0%)

Query  1   MNNVLFIGNSALIIVLKLTAVPIALATVVGIFVGLFQTVMQIQEQTLPFGLKMLAVFASI  60
           M++++F GN AL +VL L++ P  +AT++G++VGLFQTV Q+QEQTLPFG+K+L+V   +
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FMLIEWFSAEMMNFAIQAFYMAF  83
           F+L  W++  +++++ Q +++A+
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

88) spaQ1 in NC_013961


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 76.0 bits (269),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 37/83 (45%), Positives = 66/83 (80%), Gaps = 0/83 (0%)

Query  1   MNNVLFIGNSALIIVLKLTAVPIALATVVGIFVGLFQTVMQIQEQTLPFGLKMLAVFASI  60
           M++++F GN AL +VL L++ P  +AT++G++VGLFQTV Q+QEQTLPFG+K+L+V   +
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FMLIEWFSAEMMNFAIQAFYMAF  83
           F+L  W++  +++++ Q +++A+
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLAL  83

89) Dvul_3009 in NC_008741


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 75.7 bits (268),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 38/71 (54%), Positives = 60/71 (85%), Gaps = 0/71 (0%)

Query  9   AVKALYLVLMLSMPPIIVASVVGIVLSLIQAITQLQEQTLTFGVKLIAVVLTLFLMGGWF  68
           + KALYLVL+LS  P IVA+++G++++L+Q++TQLQEQTL FG+KL++V L LFL++GW+
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  69  GGELLRFADEI  79
           G  LL ++ ++
Sbjct  68  GEVLLSYGRQV  78

90) invX in NC_005863


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 75.7 bits (268),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 38/71 (54%), Positives = 60/71 (85%), Gaps = 0/71 (0%)

Query  9   AVKALYLVLMLSMPPIIVASVVGIVLSLIQAITQLQEQTLTFGVKLIAVVLTLFLMGGWF  68
           + KALYLVL+LS  P IVA+++G++++L+Q++TQLQEQTL FG+KL++V L LFL++GW+
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  69  GGELLRFADEI  79
           G  LL ++ ++
Sbjct  68  GEVLLSYGRQV  78

91) Deval_3199 in NC_017311


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 75.7 bits (268),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 38/71 (54%), Positives = 60/71 (85%), Gaps = 0/71 (0%)

Query  9   AVKALYLVLMLSMPPIIVASVVGIVLSLIQAITQLQEQTLTFGVKLIAVVLTLFLMGGWF  68
           + KALYLVL+LS  P IVA+++G++++L+Q++TQLQEQTL FG+KL++V L LFL++GW+
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  69  GGELLRFADEI  79
           G  LL ++ ++
Sbjct  68  GEVLLSYGRQV  78

92) spaQ in NC_010694


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 75.5 bits (267),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 39/82 (48%), Positives = 64/82 (79%), Gaps = 0/82 (0%)

Query  1   MSNILFIGNSALILVLKLTAVPIACATIVGIIVGLFQTVMQIQEQTLPFGLKMLAVFASI  60
           M +++F GN AL LVL L++ P   ATI+G++VGLFQTV Q+QEQTLPFG+K+L+V   +
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FILIEWFSAEMMNFATHVFYMA  82
           F+L  W++  +++++ +V+++A
Sbjct  61  FLLSGWYGEVLLSYGRQVIFLA  82

93) yscS in NC_008011


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 71.5 bits (252),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 39/71 (55%), Positives = 57/71 (81%), Gaps = 0/71 (0%)

Query  9   TAKALYLVLVLSMPPILVASLVGLFVSLIQAITQLQEQTLAFGIKLLAVVLTLFFMGGWL  68
             KALYLVL+LS  P +VA+++GL+V+L+Q++TQLQEQTL+FGIKLL+V L LF+++GW 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  69  TGELYRYAEEI  79
              L  Y+ ++
Sbjct  68  GEVLLSYGRQV  78

94) sctS in NC_020127


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 71.0 bits (250),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 39/71 (55%), Positives = 57/71 (81%), Gaps = 0/71 (0%)

Query  4   TAKALYLVLVLSMPPILVASLVGLFVSLIQAITQLQEQTLAFGIKLLAVVLTLFFMGGWL  63
             KALYLVL+LS  P +VA+++GL+V+L+Q++TQLQEQTL+FGIKLL+V L LF+++GW 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  64  TGELYRYAEEI  74
              L  Y+ ++
Sbjct  68  GEVLLSYGRQV  78

95) SG0570 in NC_007712


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 61.8 bits (215),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 41/77 (54%), Positives = 59/77 (77%), Gaps = 0/77 (0%)

Query  1   MSEISYIGNsalllvlklsavPIAMATIVGLVVGLFQTVMQIQEQTLPFGLKMLAVFACL  60
           M ++ + GN AL LVL LS+ P  +ATI+GL+VGLFQTV Q+QEQTLPFG+K+L+V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  LMLMGWFASEGLRFATE  77
           ++L GW++   L ++ +
Sbjct  61  FLLSGWYGEVLLSYGRQ  77

96) spaQ in NC_017390


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 61.0 bits (212),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 35/78 (45%), Positives = 59/78 (76%), Gaps = 0/78 (0%)

Query  1   MNNTLFISNaalvvvlkltavPIAFATLVGIIVGLFQTIMQIQEQTLPFGLKMLAVFASI  60
           M++ +F +N AL +VL L++ P   AT++G++VGLFQT+ Q+QEQTLPFG+K+L+V   +
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FMLIEWFSAEMLNFANQA  78
           F+L  W++  +L+++ Q 
Sbjct  61  FLLSGWYGEVLLSYGRQV  78

97) spaQ in NC_012214


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 61.0 bits (212),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 35/78 (45%), Positives = 59/78 (76%), Gaps = 0/78 (0%)

Query  1   MNNTLFISNaalvvvlkltavPIAFATLVGIIVGLFQTIMQIQEQTLPFGLKMLAVFASI  60
           M++ +F +N AL +VL L++ P   AT++G++VGLFQT+ Q+QEQTLPFG+K+L+V   +
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  FMLIEWFSAEMLNFANQA  78
           F+L  W++  +L+++ Q 
Sbjct  61  FLLSGWYGEVLLSYGRQV  78

98) MU9_27 in NC_020418


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 57.6 bits (199),  Expect = 6e-10, Method: Compositional matrix adjust.
 Identities = 43/82 (53%), Positives = 71/82 (87%), Gaps = 0/82 (0%)

Query  2   DVIYAADKGIYLVIMLSLLPVSVAtvvgltvgllqtvtqIQEQTLPFGLKLIAVFVCILM  61
           D+++A++K++YLV++LS  P  VAT++GL VGL+QTVTQ+QEQTLPFG+KL++V +C+++
Sbjct  3   DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL  62

Query  62  QLSWLGDSMLSYAREMFSLALS  83
             +W G+ +LSY+R+++ LAL+
Sbjct  63  LSGWYGEVLLSYGRQVIFLALA  84

99) xsaX in NC_013722


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 56.8 bits (196),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 43/78 (56%), Positives = 64/78 (83%), Gaps = 0/78 (0%)

Query  1   MEKIIYAVNKAlvlvlllSAPAIITATIVGIAMGLFQTVTQLQEQTLPFGVKliavlacl  60
           M+ +++A NKAL LVL+LS+ + I ATI+G+ +GLFQTVTQLQEQTLPFG+KL++V  CL
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  lllEPWMAMIVMRFAREV  78
           +LL  W + +++ ++R+V
Sbjct  61  FLLSGWYGEVLLSYGRQV  78

100) ascS in NC_009350


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 56.6 bits (195),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 35/73 (48%), Positives = 55/73 (76%), Gaps = 0/73 (0%)

Query  10  TSQALWLVLILSMPPVLVAALVGTLVSLLQALTQIQEQTLGFVAKLIAVVITLFATTAWL  69
            ++AL LVLILS  P +VA+++G LV+L+Q++TQ+QEQTL F  KL++V + LF  ++W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  70  GNELYSFANMVLF  82
           G+ L S++  V+F
Sbjct  68  GEVLLSYGRQVIF  80

101) Ser39006_2920 in NC_022268


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 54.7 bits (188),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 29/67 (44%), Positives = 51/67 (77%), Gaps = 0/67 (0%)

Query  8   KQAMVLVVMLSAPPLLAAVMVGVLVSLIQAVMQLQDQTLPFAVKLVSVGLVLAMTGRWIG  67
           ++A+ LV++LS+ P + A ++G+LV+L+Q+V QLQ+QTLPF++KL++V L L + + W G
Sbjct  9   NKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYG  68

Query  68  SELIQLA  74
             L+  +
Sbjct  69  EVLLSYG  75

102) VPBB_1533 in NC_019955


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 54.5 bits (187),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 35/84 (42%), Positives = 58/84 (70%), Gaps = 4/84 (4%)

Query  4   AEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVIITLF  63
            +++    +AL LVL+LS  P +VA+++G LV+L+Q++TQ+QEQTL F +KL++V + LF
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  64  ITTQWLGAELHAFAS----LALDK  83
           + + W G  L +++     LAL K
Sbjct  62  LLSGWYGEVLLSYGRQVIFLALAK  85

103) M636_13700 in NC_021848


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 54.5 bits (187),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 35/84 (42%), Positives = 58/84 (70%), Gaps = 4/84 (4%)

Query  4   AEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVIITLF  63
            +++    +AL LVL+LS  P +VA+++G LV+L+Q++TQ+QEQTL F +KL++V + LF
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  64  ITTQWLGAELHAFAS----LALDK  83
           + + W G  L +++     LAL K
Sbjct  62  LLSGWYGEVLLSYGRQVIFLALAK  85

104) M634_09100 in NC_021847


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 54.5 bits (187),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 35/84 (42%), Positives = 58/84 (70%), Gaps = 4/84 (4%)

Query  4   AEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVIITLF  63
            +++    +AL LVL+LS  P +VA+++G LV+L+Q++TQ+QEQTL F +KL++V + LF
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  64  ITTQWLGAELHAFAS----LALDK  83
           + + W G  L +++     LAL K
Sbjct  62  LLSGWYGEVLLSYGRQVIFLALAK  85

105) VP1673 in NC_004603


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 54.5 bits (187),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 35/84 (42%), Positives = 58/84 (70%), Gaps = 4/84 (4%)

Query  4   AEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVIITLF  63
            +++    +AL LVL+LS  P +VA+++G LV+L+Q++TQ+QEQTL F +KL++V + LF
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  64  ITTQWLGAELHAFAS----LALDK  83
           + + W G  L +++     LAL K
Sbjct  62  LLSGWYGEVLLSYGRQVIFLALAK  85

106) HCH_03262 in NC_007645


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 53.7 bits (184),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 33/68 (49%), Positives = 48/68 (71%), Gaps = 0/68 (0%)

Query  10  TTEALLLVLILSMPPILVATFTGVLVSLLQAVTQIQEQTLGFAVKLVAIVATLYLTARWL  69
              AL LVLILS  P +VAT+ G+LV+L+Q+VTQ+QEQTL F++KL+++   L+L + W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  70  GMEMYQYT  77
           G  +  Y 
Sbjct  68  GEVLLSYG  75

107) M892_04540 in NC_022269


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 53.4 bits (183),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 32/74 (44%), Positives = 53/74 (72%), Gaps = 0/74 (0%)

Query  4   AEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLVQALTQVQEQTLGFVVKLIAVIITLF  63
            +++    +AL LVL+LS  P +VA+++G LV+L Q++TQ+QEQTL F +KL++V + LF
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  64  VTTQWLGAELHSFA  77
           + + W G  L S++
Sbjct  62  LLSGWYGEVLLSYG  75

108) VIBHAR_01725 in NC_009783


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 53.4 bits (183),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 32/74 (44%), Positives = 53/74 (72%), Gaps = 0/74 (0%)

Query  4   AEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLVQALTQVQEQTLGFVVKLIAVIITLF  63
            +++    +AL LVL+LS  P +VA+++G LV+L Q++TQ+QEQTL F +KL++V + LF
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  64  VTTQWLGAELHSFA  77
           + + W G  L S++
Sbjct  62  LLSGWYGEVLLSYG  75

109) CPE3_0899 in NC_022441


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 53.4 bits (183),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 28/69 (41%), Positives = 55/69 (80%), Gaps = 0/69 (0%)

Query  18  QSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLMISGGWLST  77
           ++L L+LI+S+ P I+A+I+G++V++FQ+ TQ+QEQT++F+IKL+ +   L + +GW + 
Sbjct  10  KALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYGE  69

Query  78  MILRFASQI  86
           ++L ++ Q+
Sbjct  70  VLLSYGRQV  78

110) CPE1_0898 in NC_022439


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 53.4 bits (183),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 28/69 (41%), Positives = 55/69 (80%), Gaps = 0/69 (0%)

Query  18  QSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLMISGGWLST  77
           ++L L+LI+S+ P I+A+I+G++V++FQ+ TQ+QEQT++F+IKL+ +   L + +GW + 
Sbjct  10  KALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYGE  69

Query  78  MILRFASQI  86
           ++L ++ Q+
Sbjct  70  VLLSYGRQV  78

111) CPE2_0899 in NC_022440


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 53.4 bits (183),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 28/69 (41%), Positives = 55/69 (80%), Gaps = 0/69 (0%)

Query  18  QSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLMISGGWLST  77
           ++L L+LI+S+ P I+A+I+G++V++FQ+ TQ+QEQT++F+IKL+ +   L + +GW + 
Sbjct  10  KALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYGE  69

Query  78  MILRFASQI  86
           ++L ++ Q+
Sbjct  70  VLLSYGRQV  78

112) sctS in NC_012962


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 53.2 bits (182),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 32/69 (47%), Positives = 52/69 (76%), Gaps = 0/69 (0%)

Query  10  TSQSLWLVLILSLPPVLMAAVVGTLVSLIQALTQIQEQTLGFVIKLIAVIITLFATATWL  69
            +++L LVLILS  P ++A+++G LV+L+Q++TQ+QEQTL F IKL++V + LF  + W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  70  GNELYSFAN  78
           G+ L S++ 
Sbjct  68  GEVLLSYGR  76

113) N646_0741 in NC_022349


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 53.2 bits (182),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 31/75 (42%), Positives = 53/75 (71%), Gaps = 0/75 (0%)

Query  4   AEIIHFTTQALTLVLYLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVIITLF  63
            +++    +AL LVL LS  P +VA+++G LV+L+Q++TQ+QEQTL F +KL++V + LF
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  64  VTTQWLGAELHAFAS  78
           + + W G  L +++ 
Sbjct  62  LLSGWYGEVLLSYGR  76

114) VEA_003361 in NC_013456


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 53.2 bits (182),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 31/75 (42%), Positives = 53/75 (71%), Gaps = 0/75 (0%)

Query  4   AEIIHFTTQALTLVLYLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVIITLF  63
            +++    +AL LVL LS  P +VA+++G LV+L+Q++TQ+QEQTL F +KL++V + LF
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  64  VTTQWLGAELHAFAS  78
           + + W G  L +++ 
Sbjct  62  LLSGWYGEVLLSYGR  76

115) sctS in NC_005126


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 52.6 bits (180),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 34/78 (44%), Positives = 58/78 (75%), Gaps = 1/78 (1%)

Query  10  TSQSLWLVLILSLPPVLMAAAVGTLVSLIQALTQIQEQTLGFVIKLIAVIITLFATATWL  69
            +++L LVLILS  P ++A+ +G LV+L+Q++TQ+QEQTL F IKL++V + LF  + W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  70  GNELYSFA-NMTFLKVPQ  86
           G+ L S++ ++ FL +++
Sbjct  68  GEVLLSYGRQVIFLALAK  85

116) Mlg_0979 in NC_008340


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 52.6 bits (180),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 30/70 (43%), Positives = 48/70 (69%), Gaps = 0/70 (0%)

Query  10  GKQALTVAVLLAGPILLSALITGLLIGLFQAATQINEQTLSFVPKLGVMALVLFIMTPWM  69
           G++AL + ++L+G   + A I GLL+GLFQ+ TQ++EQTL+F  KL  + L LF+++ W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  70  HTILTDFTRQ  79
             +L  + RQ
Sbjct  68  GEVLLSYGRQ  77

117) SbBS512_A0188 in NC_010660


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 52.1 bits (178),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 56/81 (70%), Positives = 72/81 (89%), Gaps = 0/81 (0%)

Query  1   MSDIVYMGNKALYLILIFSLWPVGIATVIGLTIGllqtvtqlqeqtlPFgikligvsisl  60
           M D+V+ GNKALYL+LI+S WP  +AT+IGL +GL+QTVTQLQEQTLPFGIKL+GV + L
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  lllsgWYGEVLLSFCHEIMFL  81
           +LLSGWYGEVLLS+ ++++FL
Sbjct  61  FLLSGWYGEVLLSYGRQVIFL  81

118) spa9 in NC_007607


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 52.1 bits (178),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 56/81 (70%), Positives = 72/81 (89%), Gaps = 0/81 (0%)

Query  1   MSDIVYMGNKALYLILIFSLWPVGIATVIGLTIGllqtvtqlqeqtlPFgikligvsisl  60
           M D+V+ GNKALYL+LI+S WP  +AT+IGL +GL+QTVTQLQEQTLPFGIKL+GV + L
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  lllsgWYGEVLLSFCHEIMFL  81
           +LLSGWYGEVLLS+ ++++FL
Sbjct  61  FLLSGWYGEVLLSYGRQVIFL  81

119) spa9 in NC_017319


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 51.9 bits (177),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 56/81 (70%), Positives = 72/81 (89%), Gaps = 0/81 (0%)

Query  1   MSDIVYMGNKALYLILIFSLWPVGIATVIGLSIGllqtvtqlqeqtlPFgikligvsisl  60
           M D+V+ GNKALYL+LI+S WP  +AT+IGL +GL+QTVTQLQEQTLPFGIKL+GV + L
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  lllsgWYGEVLLSFCHEIMFL  81
           +LLSGWYGEVLLS+ ++++FL
Sbjct  61  FLLSGWYGEVLLSYGRQVIFL  81

120) spa9 in NC_004851


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 51.9 bits (177),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 56/81 (70%), Positives = 72/81 (89%), Gaps = 0/81 (0%)

Query  1   MSDIVYMGNKALYLILIFSLWPVGIATVIGLSIGllqtvtqlqeqtlPFgikligvsisl  60
           M D+V+ GNKALYL+LI+S WP  +AT+IGL +GL+QTVTQLQEQTLPFGIKL+GV + L
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  lllsgWYGEVLLSFCHEIMFL  81
           +LLSGWYGEVLLS+ ++++FL
Sbjct  61  FLLSGWYGEVLLSYGRQVIFL  81

121) spa9 in NC_007385


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 51.9 bits (177),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 56/81 (70%), Positives = 72/81 (89%), Gaps = 0/81 (0%)

Query  1   MSDIVYMGNKALYLILIFSLWPVGIATVIGLSIGllqtvtqlqeqtlPFgikligvsisl  60
           M D+V+ GNKALYL+LI+S WP  +AT+IGL +GL+QTVTQLQEQTLPFGIKL+GV + L
Sbjct  1   MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL  60

Query  61  lllsgWYGEVLLSFCHEIMFL  81
           +LLSGWYGEVLLS+ ++++FL
Sbjct  61  FLLSGWYGEVLLSYGRQVIFL  81

122) NH44784_014531 in NC_021285


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 47.9 bits (162),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 35/76 (47%), Positives = 52/76 (69%), Gaps = 0/76 (0%)

Query  5   DLVSYMTQALYLVLWLSLPPIAVAAIVGTLFSLFQALTQIQEQTLSFAVKLIAVFATIML  64
           DLV    +ALYLVL LS  P  VA+I+G L +LFQ++TQ+QEQTL+F++KL++V   + L
Sbjct  3   DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL  62

Query  65  TARWLSAELYNFTISV  80
            + W +  L ++   V
Sbjct  63  LSGWYGEVLLSYGRQV  78

123) Slit_0587 in NC_013959


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 47.4 bits (160),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 30/73 (42%), Positives = 51/73 (70%), Gaps = 0/73 (0%)

Query  4   ESVMTIGQQALELTIMVSAPPLLTALIIGLLVSIFQAATQINELTLSFIPKLLGAFVVLI  63
           + ++  G++AL L +++S+ P + A IIGLLV++FQ+ TQ++E TL+F  KLLG  + L+
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  64  ISGPWMIGILLDY  76
           + + W   +LL Y
Sbjct  62  LLSGWYGEVLLSY  74

124) D781_3937 in NC_020064


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 46.9 bits (158),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 29/69 (43%), Positives = 49/69 (72%), Gaps = 0/69 (0%)

Query  8   RQAMLLVVLLSAPPLIVAVLVGVITSLLQAAMQLQDQTLPFCLKLVAVGVTLALTGRWLG  67
            +A+ LV++LS+ P IVA ++G++ +L+Q+  QLQ+QTLPF +KL++V + L L + W G
Sbjct  9   NKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYG  68

Query  68  VELLQLTQN  76
             LL   ++
Sbjct  69  EVLLSYGRQ  77

125) hscS in NC_014366


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 46.3 bits (156),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 31/71 (44%), Positives = 51/71 (72%), Gaps = 0/71 (0%)

Query  9   TQEALWLLLMLSAPIILGAAASGLVIAFLQAVTQLQEQTLGFAVKLVVVSALIFLTSGLV  68
            + AL L+L+LS+   + A+  GL+++++Q+VTQLQEQTL F++KL+ V   +FL SG  
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  69  GETLFQYASRI  79
           GE L+ Y+ ++
Sbjct  68  GEVLLSYGRQV  78

126) bscS in NC_019382


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 46.1 bits (155),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 34/77 (45%), Positives = 53/77 (69%), Gaps = 0/77 (0%)

Query  7   QDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFATLM  66
           +DLV    +ALYLVL LS  P  VA+I+G L +L+Q++TQ+QEQTL+F++KL++V   L 
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  67  LAARWISAEIYNFTIAV  83
           L + W +  + ++   V
Sbjct  62  LLSGWYGEVLLSYGRQV  78

127) bscS in NC_018829


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 46.1 bits (155),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 34/77 (45%), Positives = 53/77 (69%), Gaps = 0/77 (0%)

Query  7   QDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFATLM  66
           +DLV    +ALYLVL LS  P  VA+I+G L +L+Q++TQ+QEQTL+F++KL++V   L 
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  67  LAARWISAEIYNFTIAV  83
           L + W +  + ++   V
Sbjct  62  LLSGWYGEVLLSYGRQV  78

128) bscS in NC_002927


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 46.1 bits (155),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 34/77 (45%), Positives = 53/77 (69%), Gaps = 0/77 (0%)

Query  7   QDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFATLM  66
           +DLV    +ALYLVL LS  P  VA+I+G L +L+Q++TQ+QEQTL+F++KL++V   L 
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  67  LAARWISAEIYNFTIAV  83
           L + W +  + ++   V
Sbjct  62  LLSGWYGEVLLSYGRQV  78

129) bscS in NC_002928


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 46.1 bits (155),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 34/77 (45%), Positives = 53/77 (69%), Gaps = 0/77 (0%)

Query  7   QDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFATLM  66
           +DLV    +ALYLVL LS  P  VA+I+G L +L+Q++TQ+QEQTL+F++KL++V   L 
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  67  LAARWISAEIYNFTIAV  83
           L + W +  + ++   V
Sbjct  62  LLSGWYGEVLLSYGRQV  78

130) bscS in NC_018828


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 46.1 bits (155),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 34/77 (45%), Positives = 53/77 (69%), Gaps = 0/77 (0%)

Query  7   QDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFATLM  66
           +DLV    +ALYLVL LS  P  VA+I+G L +L+Q++TQ+QEQTL+F++KL++V   L 
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  67  LAARWISAEIYNFTIAV  83
           L + W +  + ++   V
Sbjct  62  LLSGWYGEVLLSYGRQV  78

131) bscS in NC_018518


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 45.3 bits (152),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 33/77 (43%), Positives = 52/77 (68%), Gaps = 0/77 (0%)

Query  4   QDLVSFMTQALYLVLWLSLPPIAVVAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFATLM  63
           +DLV    +ALYLVL LS  P  V +I+G L +L+Q++TQ+QEQTL+F++KL++V   L 
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  64  LAARWISAEIYNFTIAV  80
           L + W +  + ++   V
Sbjct  62  LLSGWYGEVLLSYGRQV  78

132) bscS in NC_017223


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 45.3 bits (152),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 33/77 (43%), Positives = 52/77 (68%), Gaps = 0/77 (0%)

Query  4   QDLVSFMTQALYLVLWLSLPPIAVVAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFATLM  63
           +DLV    +ALYLVL LS  P  V +I+G L +L+Q++TQ+QEQTL+F++KL++V   L 
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  64  LAARWISAEIYNFTIAV  80
           L + W +  + ++   V
Sbjct  62  LLSGWYGEVLLSYGRQV  78

133) bscS in NC_002929


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 45.3 bits (152),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 33/77 (43%), Positives = 52/77 (68%), Gaps = 0/77 (0%)

Query  4   QDLVSFMTQALYLVLWLSLPPIAVVAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFATLM  63
           +DLV    +ALYLVL LS  P  V +I+G L +L+Q++TQ+QEQTL+F++KL++V   L 
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  64  LAARWISAEIYNFTIAV  80
           L + W +  + ++   V
Sbjct  62  LLSGWYGEVLLSYGRQV  78

134) yscS in NC_016642


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 43.7 bits (146),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 32/75 (43%), Positives = 57/75 (76%), Gaps = 0/75 (0%)

Query  4   EDAVYRISEAMILVMMLSLPPIIvaslvglavsllqalTQMQEQTIQFGVKLIAVALTLF  63
           +D V+  + A+ LV++LS  P IVA+++GL V+L+Q++TQ+QEQT+ FG+KL++V L LF
Sbjct  2   DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF  61

Query  64  MMSSFLGSETIGFTQ  78
           ++S+  G   +++ +
Sbjct  62  LLSGWYGEVLLSYGR  76

135) PSEBR_a5381 in NC_015379


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 42.9 bits (143),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 32/69 (47%), Positives = 52/69 (76%), Gaps = 0/69 (0%)

Query  8   KEGMLLVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKlvavgltllvtgRWIG  67
           + ++ LV++LS+ P IVA I+G+L +L Q++ Q+Q+QTLPFGIKL++V L L++ + W G
Sbjct  9   NKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYG  68

Query  68  VELLGLLRR  76
             LL+  R+
Sbjct  69  EVLLSYGRQ  77

136) hrcS in NC_016830


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 42.9 bits (143),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 32/69 (47%), Positives = 52/69 (76%), Gaps = 0/69 (0%)

Query  8   KEGMLLVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKlvavgltllvtgRWIG  67
           + ++ LV++LS+ P IVA I+G+L +L Q++ Q+Q+QTLPFGIKL++V L L++ + W G
Sbjct  9   NKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYG  68

Query  68  VELLGLLRR  76
             LL+  R+
Sbjct  69  EVLLSYGRQ  77

137) hrcS in NC_005773


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 41.9 bits (139),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 28/66 (43%), Positives = 50/66 (76%), Gaps = 0/66 (0%)

Query  8   KQGMFLVVILTapplgvavlvgvlTSLLQALMQIQDQTLPFGIKLGAVGLTLAMTGRWIG  67
           +++++LV+IL++ P  VA ++G+L +L+Q++ Q+Q+QTLPFGIKL +V L L + + W G
Sbjct  9   NKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYG  68

Query  68  VELIQF  73
             L+ +
Sbjct  69  EVLLSY  74

138) fliQ in NC_011312


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 41.6 bits (138),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 26/64 (41%), Positives = 43/64 (68%), Gaps = 0/64 (0%)

Query  13  ALYMVLIMVCAIIIPSLLIGLVVAVFQAATSINEQTLSFLPRLIVTLLSLMLFGHWMTRM  72
           ALY+VLI+     I + +IGL+V++FQ+ T ++EQTL+F  +L+   L L L++ W   +
Sbjct  11  ALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYGEV  70

Query  73  LMEY  76
           L+ Y
Sbjct  71  LLSY  74

139) fliQ in NC_006840


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 40.8 bits (135),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 26/64 (41%), Positives = 43/64 (68%), Gaps = 0/64 (0%)

Query  13  ALYMVLIMVCAIIIPSLLIGLVVAVFQAATSINEQTLSFLPRLIVTLLALMLFGHWMTRM  72
           ALY+VLI+     I + +IGL+V++FQ+ T ++EQTL+F  +L+   L L L++ W   +
Sbjct  11  ALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYGEV  70

Query  73  LMEY  76
           L+ Y
Sbjct  71  LLSY  74

140) fliQ in NC_011184


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 40.8 bits (135),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 26/64 (41%), Positives = 43/64 (68%), Gaps = 0/64 (0%)

Query  13  ALYMVLIMVCAIIIPSLLIGLVVAVFQAATSINEQTLSFLPRLIVTLLALMLFGHWMTRM  72
           ALY+VLI+     I + +IGL+V++FQ+ T ++EQTL+F  +L+   L L L++ W   +
Sbjct  11  ALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYGEV  70

Query  73  LMEY  76
           L+ Y
Sbjct  71  LLSY  74

141) fliQ in NC_009725


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 38.7 bits (127),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 29/70 (42%), Positives = 52/70 (75%), Gaps = 0/70 (0%)

Query  10  AEKAVYVTLMISgpllaialivgllvSIFQATTQIQEQTLAFIPKIVAVMLGLIFFGPWM  69
           ++KA+Y+ L++SG    +A I+GLLV++FQ+ TQ+QEQTL+F  K+++V L L++++ W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  70  LSTILSFTTD  79
              +LS+  +
Sbjct  68  GEVLLSYGRQ  77

142) fliQ in NC_020272


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 38.7 bits (127),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 29/70 (42%), Positives = 52/70 (75%), Gaps = 0/70 (0%)

Query  10  AEKAVYVTLMISgpllaialivgllvSIFQATTQIQEQTLAFIPKIVAVMLGLIFFGPWM  69
           ++KA+Y+ L++SG    +A I+GLLV++FQ+ TQ+QEQTL+F  K+++V L L++++ W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  70  LSTILSFTTD  79
              +LS+  +
Sbjct  68  GEVLLSYGRQ  77

143) fliQ in NC_019842


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 38.7 bits (127),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 29/70 (42%), Positives = 52/70 (75%), Gaps = 0/70 (0%)

Query  10  AEKAVYVTLMISgpllaialivgllvSIFQATTQIQEQTLAFIPKIVAVMLGLIFFGPWM  69
           ++KA+Y+ L++SG    +A I+GLLV++FQ+ TQ+QEQTL+F  K+++V L L++++ W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  70  LSTILSFTTD  79
              +LS+  +
Sbjct  68  GEVLLSYGRQ  77

144) fliQ in NC_016784


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 38.7 bits (127),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 29/70 (42%), Positives = 52/70 (75%), Gaps = 0/70 (0%)

Query  10  AEKAVYVTLMISgpllaialivgllvSIFQATTQIQEQTLAFIPKIVAVMLGLIFFGPWM  69
           ++KA+Y+ L++SG    +A I+GLLV++FQ+ TQ+QEQTL+F  K+++V L L++++ W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  70  LSTILSFTTD  79
              +LS+  +
Sbjct  68  GEVLLSYGRQ  77

145) fliQ in NC_017061


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 38.7 bits (127),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 29/70 (42%), Positives = 52/70 (75%), Gaps = 0/70 (0%)

Query  10  AEKAVYVTLMISgpllaialivgllvSIFQATTQIQEQTLAFIPKIVAVMLGLIFFGPWM  69
           ++KA+Y+ L++SG    +A I+GLLV++FQ+ TQ+QEQTL+F  K+++V L L++++ W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  70  LSTILSFTTD  79
              +LS+  +
Sbjct  68  GEVLLSYGRQ  77

146) fliQ in NC_022075


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 38.5 bits (126),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 29/70 (42%), Positives = 52/70 (75%), Gaps = 0/70 (0%)

Query  13  AEKAVYVTLMISgpllaialivgllvSIFQATTQIQEQTLAFIPKIVAVMLGLIFFGPWM  72
           ++KA+Y+ L++SG    +A I+GLLV++FQ+ TQ+QEQTL+F  K+++V L L++++ W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  73  LSTILSFTTD  82
              +LS+  +
Sbjct  68  GEVLLSYGRQ  77

147) fliQ in NC_020410


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 38.5 bits (126),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 29/70 (42%), Positives = 52/70 (75%), Gaps = 0/70 (0%)

Query  13  AEKAVYVTLMISgpllaialivgllvSIFQATTQIQEQTLAFIPKIVAVMLGLIFFGPWM  72
           ++KA+Y+ L++SG    +A I+GLLV++FQ+ TQ+QEQTL+F  K+++V L L++++ W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  73  LSTILSFTTD  82
              +LS+  +
Sbjct  68  GEVLLSYGRQ  77

148) fliQ in NC_022081


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 38.5 bits (126),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 29/70 (42%), Positives = 52/70 (75%), Gaps = 0/70 (0%)

Query  13  AEKAVYVTLMISgpllaialivgllvSIFQATTQIQEQTLAFIPKIVAVMLGLIFFGPWM  72
           ++KA+Y+ L++SG    +A I+GLLV++FQ+ TQ+QEQTL+F  K+++V L L++++ W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  73  LSTILSFTTD  82
              +LS+  +
Sbjct  68  GEVLLSYGRQ  77

149) Meso_0111 in NC_008254


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 37.9 bits (124),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 28/65 (44%), Positives = 47/65 (73%), Gaps = 1/65 (1%)

Query  2   ARNAIVLVFYLSMPLIIAATVVGLMVAIVQTLIQLQEQTVAFAAKLTAVVLILSFSIGGM  61
           + +A+ LV+ LS    I AT++GL+V++ QT+ QLQEQT++F+ KL +V L L F ++G 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL-FLLSGW  66

Query  62  SSHLL  66
            +++L
Sbjct  67  YGEVL  71

150) Rfer_0561 in NC_007908


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 36.6 bits (119),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 29/71 (41%), Positives = 50/71 (71%), Gaps = 2/71 (2%)

Query  6   GQEALIMLLMVSAPvlgvvlvvgllvSLFQAVTQINEATLAFVPKLVA-AMAVFALAGPW  64
           G+ AL ++L++S+    V  ++GLLV+LFQ+VTQ++E TL+F  KL++  + +F L+G W
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSG-W  66

Query  65  MLSILVDYIRR  75
              +L+ Y R+
Sbjct  67  YGEVLLSYGRQ  77

151) fliQ in NC_007614


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 34.8 bits (112),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 30/72 (42%), Positives = 47/72 (66%), Gaps = 0/72 (0%)

Query  10  GQKAMEVTLMVSaplllaalatgllVSIFQAATQINEMTLSFIPKLVVLFAMLVLAGPWM  69
           G+KA+ + L++S+   + A   GLLV++FQ+ TQ++E TL+F  KL+ +   L L + W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  70  LSVLLDYMRQVL  81
             VLL Y RQV+
Sbjct  68  GEVLLSYGRQVI  79

152) fliQ in NC_018866


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 33.7 bits (108),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 28/68 (42%), Positives = 51/68 (75%), Gaps = 0/68 (0%)

Query  10  AKEAIAIAVIVGGPVLAVSLLIGLIVSIFQAMTQIQEQTLSFIPKllgvavillilgPWM  69
           ++ A+ + +I++G    V+ +IGL+V++FQ++TQ+QEQTL+F  KLLGV + L++L+ W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  70  LNVMTTYT  77
            +V+ +Y 
Sbjct  68  GEVLLSYG  75

153) fliQ in NC_018867


> NC_003197_P3|30|G30|16766195|NP_461810.1|Salmonella_typhimurium_LT2|-|27544..27804|spaQ|STM2889|needle 
complex export protein
Length=86

 Score = 33.7 bits (108),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 28/68 (42%), Positives = 51/68 (75%), Gaps = 0/68 (0%)

Query  10  AKEAIAIAVIVGGPVLAVSLLIGLIVSIFQAMTQIQEQTLSFIPKllgvavillilgPWM  69
           ++ A+ + +I++G    V+ +IGL+V++FQ++TQ+QEQTL+F  KLLGV + L++L+ W 
Sbjct  8   GNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWY  67

Query  70  LNVMTTYT  77
            +V+ +Y 
Sbjct  68  GEVLLSYG  75