> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  691 bits (2613),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/422 (100%), Positives = 422/422 (100%), Gaps = 0/422 (0%)

Query  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60
            MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120
            GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180
            DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240
            VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300
            WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360
            HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK  420
            LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK  420

Query  421  QM  422
            QM
Sbjct  421  QM  422

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  691 bits (2613),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/422 (100%), Positives = 422/422 (100%), Gaps = 0/422 (0%)

Query  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60
            MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120
            GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180
            DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240
            VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300
            WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360
            HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK  420
            LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK  420

Query  421  QM  422
            QM
Sbjct  421  QM  422

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  691 bits (2613),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/422 (100%), Positives = 422/422 (100%), Gaps = 0/422 (0%)

Query  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60
            MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120
            GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180
            DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240
            VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300
            WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360
            HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK  420
            LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK  420

Query  421  QM  422
            QM
Sbjct  421  QM  422

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  691 bits (2613),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/422 (100%), Positives = 422/422 (100%), Gaps = 0/422 (0%)

Query  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60
            MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120
            GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180
            DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240
            VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300
            WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360
            HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK  420
            LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK  420

Query  421  QM  422
            QM
Sbjct  421  QM  422

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  691 bits (2613),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/422 (100%), Positives = 422/422 (100%), Gaps = 0/422 (0%)

Query  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60
            MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120
            GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180
            DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240
            VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300
            WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360
            HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK  420
            LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK  420

Query  421  QM  422
            QM
Sbjct  421  QM  422

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  691 bits (2613),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/422 (100%), Positives = 422/422 (100%), Gaps = 0/422 (0%)

Query  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60
            MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120
            GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180
            DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240
            VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300
            WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360
            HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK  420
            LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPPPTWK  420

Query  421  QM  422
            QM
Sbjct  421  QM  422

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  619 bits (2339),  Expect = 1e-178, Method: Compositional matrix adjust.
 Identities = 363/404 (90%), Positives = 391/404 (97%), Gaps = 0/404 (0%)

Query  1    MPRQTKQLSATEVKNAKAKEKEYYLVDGQGLKLRVLPSGSKQWLFNYYRPTNGKRANLNL  60
            M+++T +L+  E+K +K++EKEY L DG+GL+LR+ P+GSKQW+FNYYRPTNGKRANL++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GRFPDVSLVQARKASLNAKELIAQGIDPQDERKRQQQAHKEIHEHTFVNVAKDWFAIKQH  120
            G +PD+SL+QARK+ L+AKELIAQGIDPQD+RKRQQQ HKEIHEHTF NV+KDWFAIKQ+
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180
            DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMGAIANASIKRTTRCLLE  240
            VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELM+AIANASIKRTTRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAEASGARWDEINWEENVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300
            WQLHTMTRPAEASGARWDEINWEE+VWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HRDFVFPSDRDPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVEAA  360
            HRDF+FPSDR PKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVE+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSGHIEEAARGSLSVT  404
            LAHVDDNQVRSAYNRTDYLERRKPMMCWWS HIEEAARGSLSVT
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVT  404

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  588 bits (2219),  Expect = 3e-169, Method: Compositional matrix adjust.
 Identities = 332/410 (81%), Positives = 383/410 (94%), Gaps = 0/410 (0%)

Query  5    MPRQTKPLTATEVKNAKPKEKEYSLVDGQGLKLRVLPSGSKQWQLNYYRPTNGKRANLNL  64
            M+++T  LT  E+K +KP+EKEY+L DG+GL+LR+ P+GSKQW +NYYRPTNGKRANL++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  65   GRYPDVSLVQARKSALEARELIAQRIDPQEHKERKLQEHKAIHEHTFLNVSKEWFEIKKH  124
            G YPD+SL+QARKS L A+ELIAQ IDPQ+++ R+ Q HK IHEHTF NV+K+WF IK++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  125  DITPDYAVDIWRSLDLHIFPSLADTPVKQITAPQVIDLLKPIEAKGSLETVKRLVQRLNE  184
            D+TPDYA+DIWRSL+LHIFP ++D PVK ITAP++I+LLKPIEAKGSLETVKRL QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  185  VMNYSANCGLIQANPLIGIRAAFKKPKKENMAALAPTELPELMGAIANASIKRTTRCLIE  244
            VMN+++NCGLIQANPL GI+AAFKKPKKENMAAL+P+ELPELM+AIANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  245  WQLHTMTRPSEASGARWDEIEWEEKIWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  304
            WQLHTMTRP+EASGARWDEI+WEEK+WTIPAERMKKRREHRIPLTEQMLALLEVMKPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  305  HREFIFPSDRDPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQSFDRDLIETS  364
            HR+FIFPSDR PKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQ+FD DL+E++
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  365  LAHVDDNQVRSAYNRTDYLERRRPMMSWWSGHIEEAAKGSLSVTGTKQLK  414
            LAHVDDNQVRSAYNRTDYLERR+PMM WWS HIEEAA+GSLSVTGTKQLK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  579 bits (2185),  Expect = 2e-166, Method: Compositional matrix adjust.
 Identities = 340/410 (83%), Positives = 385/410 (94%), Gaps = 0/410 (0%)

Query  1    MAKVTTRLTDKEIKSAKPSDKEYNLFDGDGLRLRIKPNSSKHWIFNYYRPMNRKRANLSL  60
            MAK T +LTDKEIK++KP +KEYNLFDGDGLRLRIKPN+SK+WIFNYYRP N KRANLS+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GKYPDLSLANARKIALEASELLAQGIDPQDEKKRKQDEHNAIHQHTFLNVSKEWFELKKD  120
            G YPD+SL +ARK  L A EL+AQGIDPQD++KR+Q+ H+ IH+HTF NV+K+WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  EVTPDYAVDIWRSLELHilpsisnlpissinAPQIIELLKPIEAKGSLETVKRLSQRLNE  180
            +VTPDYA+DIWRSLELHI+P IS+ P+ +I AP+IIELLKPIEAKGSLETVKRL+QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMNFATNCGLVPANPLTGIRAAFKKPKKENMAALKPAELPELMGAIANASIKRTTRCLIE  240
            +MNFATNCGL+ ANPLTGI+AAFKKPKKENMAAL PAELPELM+AIANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPSEASGARWDEINWDEKIWTIPAERMKKRREHRIPLTEQMLELLEVIKPISG  300
            WQLHTMTRP+EASGARWDEINW+EK+WTIPAERMKKRREHRIPLTEQML LLEV+KPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREFIFPSDRDPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDRDLIEAA  360
            HR+FIFPSDR PKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFD DL+E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDDNQVRSAYNRTDYLERRRPMMCWWSGNIEEAAKGNLSVTGTKQLK  410
            LAHVDDNQVRSAYNRTDYLERR+PMMCWWS +IEEAA+G+LSVTGTKQLK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  551 bits (2078),  Expect = 4e-158, Method: Compositional matrix adjust.
 Identities = 317/410 (78%), Positives = 369/410 (90%), Gaps = 0/410 (0%)

Query  1    MAIITTRLTDKEIKTAKPRDKEYNLFDGDGLRLRIKPNGSKQWILNYYKPTNRKRANLSL  60
            MA  T +LTDKEIK++KPR+KEYNLFDGDGLRLRIKPNGSKQWI+NYY+PTN KRANLS+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GKYPDLSLANARKLSLEARELIAQNIDPQDARKERQQEVDAIHLHTFYNVAKEWFDMKKD  120
            G YPD+SL +ARK  L A+ELIAQ IDPQD RK +QQ    IH HTF NV+K+WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVSADHAVDTWRSLELHIFPSLSNTPVKDITAPFVIELLRPIEAKGSLETVKRLSQRLNE  180
             V++D A+D WRSLELHIFP +S+ PVK ITAP +IELL+PIEAKGSLETVKRL+QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMNFATNCGLIKANPLANIKAAFKKPKKENMASLAPAELPELMRSLSYASIKLTTRCLIE  240
            VMNFATNCGLI+ANPL+ IKAAFKKPKKENMA+L+PAELPELM +++ ASIK TTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPSEAAGARWDEIDLDSRVWTIPAERMKKKREHRIPLTEQMLVLLDLIKPISG  300
            WQLHTMTRP+EA+GARWDEI+ + +VWTIPAERMKK+REHRIPLTEQML LL+++KPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPSDREPTKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDRDLVEAA  360
            HR+++FPSDR P KPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFD DLVE+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LSHVEENQVRSAYNRTDYLERRRPMMSWWSGHIEEAARGGSALTRTKTLK  410
            L+HV++NQVRSAYNRTDYLERR+PMM WWS HIEEAARG+ ++T TK LK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  539 bits (2034),  Expect = 1e-154, Method: Compositional matrix adjust.
 Identities = 302/411 (74%), Positives = 368/411 (90%), Gaps = 2/411 (0%)

Query  1    MGTRATRLTSKAITNAKPKEKDYVLSDGDGLQLRVRTNGSRLWNFNYRHPITKKRINMGL  60
            M+  + +LT K I  +KP+EK+Y L DGDGL+LR++ NGS+ W FNY +P   KR N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPELSLANARKKTIEARELVADGIDPKEARDSKLSEMQKEL-EDTLLNLAKEWFERKK  119
            G +P++SL +ARK  + A+EL+A+GIDP++ R  +  +++KE+ E+T+ N++K+WF  K+
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDR-KRQQQVHKEIHEHTFENVTKDWFAIKQ  119

Query  120  ESVTPNYADDIWRSLELHVFPQIANTPVKDIDAPLVIDLLRPIEAKGSLETVKRLSQRLN  179
            + VTP+YA DIWRSLELH+FP+I++ PVK I AP +I+LL+PIEAKGSLETVKRL+QRLN
Sbjct  120  NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  180  EIMNYAANCGLVKANPLTGIRAAFKKPKKENMAALAPDELPELMGAIANASIKRTTRCLI  239
            E+MN+A+NCGL++ANPLTGI+AAFKKPKKENMAAL+P ELPELM+AIANASIKRTTRCL+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  240  EWQLHTMTRPSEAAGARWDEIEWEEKIWTIPAERMKKRREHRIPLTEQMLALLEVIKPIS  299
            EWQLHTMTRP+EA+GARWDEI+WEEK+WTIPAERMKKRREHRIPLTEQMLALLEV+KPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  300  GHREYIFPSDRDPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDRDLIEA  359
            GHR++IFPSDR PKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFD DL+E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  360  SLAHVDDNQVRSAYNRTDYLERRRPMMSWWSGHIETAAKGSLSVTGTKQLK  410
            +LAHVDDNQVRSAYNRTDYLERR+PMM WWS HIE AA+GSLSVTGTKQLK
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  535 bits (2019),  Expect = 2e-153, Method: Compositional matrix adjust.
 Identities = 298/411 (73%), Positives = 367/411 (90%), Gaps = 2/411 (0%)

Query  1    MGTRATRLTSKAITNAKPKEKDYVLSDGDGLQLRVRTNGSRLWNFNYRHPITKKRINMGL  60
            M+  + +LT K I  +KP+EK+Y L DGDGL+LR++ NGS+ W FNY +P   KR N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPELSLANARKKTIEARELVADGIDPKEARDSKLSEMQKEL-EDTLLNLAKEWFERKK  119
            G +P++SL +ARK  + A+EL+A+GIDP++ R  +  +++KE+ E+T+ N++K+WF  K+
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDR-KRQQQVHKEIHEHTFENVTKDWFAIKQ  119

Query  120  ESVTPNYADDIWRSLELHVFPQIANTPVKDIDAPLVIDLLRPIEAKGSLETVKRLSQRLN  179
            + VTP+YA DIWRSLELH+FP+I++ PVK I AP +I+LL+PIEAKGSLETVKRL+QRLN
Sbjct  120  NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  180  EIMNYAANCGLVKANPLTGIRAPFKNPKKKKMAALAPDELPELMGAIANASIKRTTRCLI  239
            E+MN+A+NCGL++ANPLTGI+A+FK+PKK +MAAL+P ELPELM+AIANASIKRTTRCL+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  240  EWQLHTMTRPSEAAGARWDEIEWEEKIWTIPAERMKKRREHRIPLTEQMLALLEVIKPIS  299
            EWQLHTMTRP+EA+GARWDEI+WEEK+WTIPAERMKKRREHRIPLTEQMLALLEV+KPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  300  GHREYIFPSDRDPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDRDLIEA  359
            GHR++IFPSDR PKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFD DL+E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  360  SLAHVDDNQVRSAYNRTDYLERRRPMMSWWSGHIETAAKGSLSVTGTKQLK  410
            +LAHVDDNQVRSAYNRTDYLERR+PMM WWS HIE AA+GSLSVTGTKQLK
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  511 bits (1927),  Expect = 4e-146, Method: Compositional matrix adjust.
 Identities = 290/407 (72%), Positives = 352/407 (87%), Gaps = 0/407 (0%)

Query  1    MALKTTRLNNKQIDNAKEREKDYVLSDGEGLQLRIRTNGSKLWNFNYIHPQTKKRLNMGL  60
            MA +T +L +K+I  +K REK+Y L DG+GL+LRI+ NGSK W FNY +P   KR N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPSLSLANARKLTVSARELVAQGIDPKEHRDEKKHQDLIIHEHTFFNVATEWFERKKD  120
            G YP +SL +ARK  +SA+EL+AQGIDP+++R  +++ +  IHEHTF NV+ +WF  K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  DITVDYAQDVWRSLELHIFPILKSTPVSQITAPMIIELLRPIEAKGSLETVKRLTQRLNE  180
            D+T DYA D+WRSLELHIFP +   PV  ITAP IIELL+PIEAKGSLETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTYSVNCGLIHANPLAGIKAAFKKPKKENMAALKPDELPELMIAIANASIKRTTRCLIE  240
            +M ++ NCGLI+ANPL+GIKAAFKKPKKENMAAL P ELPELM AIANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPSEAAGTRWEEIDLEKGIWTIPPERMKKRREHRIPLTAQALSLLEVMKPISA  300
            WQLHTMTRP+EA+G+RW+EI+ E  +WTIP+ERMKKRREHRIPLT Q L+LLEVMKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREFVFPSDRAPLKPSNSQTANMAIKRMGFAGRLVSHGLRSVASTTLNEQGFESDLIEAA  360
            HR+F+FPSDRAP KP NSQTANMA+KRMGFAGRLVSHGLRS+ASTTLNEQGF++DL+E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDDSQVRAAYNRTDYLERRIPMMKWWSGHIEEASKGSLSISGMK  407
            LAHVDD+QVR+AYNRTDYLERR PMM WWS HIEEA++GSLS++G K
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTK  407

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  489 bits (1845),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 269/410 (66%), Positives = 349/410 (86%), Gaps = 0/410 (0%)

Query  1    MAVKVIPLTDKKINSAKIHDKDYVLSDGDGLQLRVRSNGSKIWNFNYKHPQTKKRININI  60
            MA + + LTDK I+++K ++K+Y L DGDGL+LR+++NGSK W FNY +P   KR N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GKYPGVALLNARKKALSYRDLLAQDIDPKENREKKLAEDKKITEHTVKNVALEWYELKKH  120
            G YP+++LL+ARK  LS ++L+AQ+IDP+++R ++   +K I EHT  NV+ +W+ +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTADYATDIWRSLDRHIFPLLENTPISSVTAPMVIDLLRPIEAKGSLETVKRLTQRLNE  180
             VT+DYA DIWRSL+ HIFP + + P+ ++TAP +I+LL+PIEAKGSLETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTYAVNGGLIFANPLSGIKANFKKPKKSHMLALTPDELPELMMTIANASIKRTTRCLIE  240
            +M +A N GLI ANPL+GIKA FKKPKK +M ALTP ELPELM +IANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPSESAGAKWEEIDIEAKTWTIPPERMKKRREHVVPLTDQALTLLETMRPISG  300
            WQLHTMTRP+E++GA+W+EI+ E K WTIP+ERMKKRREH +PLT+Q L+LLE M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYLFPSDRNPRTHANSETANTALRRMNFGGRLVSHGLRSIASTTLNEQGFEADLVEAA  360
            HR+++FPSDR P+   NS+TAN AL+RM F+GRLVSHGLRS+ASTTLNEQGF++DLVE+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVGDNQVRNAYNRTDYLERRRPMMYWWSEHIEKASQGNLSVTGFKSLK  410
            LAHV+DNQVR+AYNRTDYLERR+PMM WWSEHIE A++G+LSVTG K LK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  487 bits (1837),  Expect = 5e-139, Method: Compositional matrix adjust.
 Identities = 256/412 (63%), Positives = 343/412 (84%), Gaps = 0/412 (0%)

Query  1    MCAQATRLSELKVKSAKPAEKDYVLFDGGGLQMRVRSNGSKLWNFNYRHPVTKKRINMGL  60
            M  ++ +L++  +K++KP EK+Y LFDG+GL++R+++NGSK W FNY +P   KR N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GTFPEVSLAQARKGSVEAREALAHGIDPKEKRDAVLQAKQAATEHTFQNVATSWYELKKD  120
            G +P++SL QARK+ + A+E +A+GIDP++ R    Q  +   EHTF+NV+  W+ +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  AVTPAYAEDIWRSLTLHIFPDLGATPISAISAPQVINLLRPLETKGSLETVKRLTQRLNE  180
             VTP YA DIWRSL LHIFP+++  P+ AI+AP++I+LL+P+E+KGSLETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTYGVNSGLIHANPLSGIRSVFKKPKKKNMAALPPDELKELMVAIANASIKRTTRCLIE  240
            +M ++ N GLI+ANPL+GI++ FKKPKK NMAAL P EL ELM AIANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPVEAATTRWADIDIEKKIWTIPAERMKKRRAHIVPLTDQALALLEAIKPYSG  300
            WQLHTMTRP EA+ +RW +I+ E K+WTIPAERMKKRR H +PLT+Q LALLE +KP SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREFVFPADRNPRTHCNSQTANMALKRMGFAGRLVSHGMRSMASTILNEHGWDPELIEVA  360
            HR+F+FP+DR P+  CNSQTANMALKRMGFAGRLVSHG+RS+AST LNE+G DP+L+E A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKDEVRSAYNRADYIERRRPLMAWWSDHIQEAATGNLSVSAIRENQDK  412
            LAHVD ++VRSAYNR+DY+ERR+P+M WWS+HI+EAA G+LSV++ ++ ++K
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNK  412

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  486 bits (1831),  Expect = 1e-138, Method: Compositional matrix adjust.
 Identities = 258/408 (64%), Positives = 341/408 (84%), Gaps = 0/408 (0%)

Query  1    MCAQAIRLSELKIKAAKPLEKDYVLVDGDGLQMRVRINGSKLWNFNYYHPVTKKRINMGL  60
            M  ++++L++  IKA+KP EK+Y L DGDGL++R++ NGSK W FNYY+P   KR N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPELSLAQARKMTIKARELLATGIDPKEQRDTLRQSKKAETEHTFQNVATAWYELKKD  120
            G YP++SL QARK  + A+EL+A GIDP+++R   +Q  K   EHTF+NV+  W+ +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPAYAEDIWRSLTLHVFSDLGTTPISAIGAPQVINLLRPLETKGSLETVKRLSQRLNE  180
             VTP YA DIWRSL LH+F++++  P+ AI AP++I+LL+P+E+KGSLETVKRL+QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTYGVNSGLIHANPLSGIRSVFKKPKKKNMAALAPDELKELMMTIANASIKRTTRCLIE  240
            +M ++ N GLI+ANPL+GI++ FKKPKK NMAAL+P EL ELM +IANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLNTMTRPAEAATTRWADIDFEKRIWTIPAERMKKRRIHIVPLTEQALALLEAIKPYSG  300
            WQL+TMTRPAEA+ +RW +I+ E ++WTIPAERMKKRR H +PLTEQ LALLE +KP SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPADRNPRTHCNSQTANMALKRMGFEGRLVSHGMRSMASTILNEHGWDPELIEVA  360
            HR+++FP+DR P+  CNSQTANMALKRMGF GRLVSHG+RS+AST LNE+G DP+L+E A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKDEVRSAYNRADYIERRRPMMAWWSEHIQEAATGNLSVSAIKE  408
            LAHVD ++VRSAYNR+DY+ERR+PMM WWSEHI+EAA G+LSV++ K+
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQ  408

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  483 bits (1821),  Expect = 9e-138, Method: Compositional matrix adjust.
 Identities = 256/412 (63%), Positives = 342/412 (84%), Gaps = 0/412 (0%)

Query  1    MCAQATRLSELKVKSAKPAEKDYVLFDGGGLQMRVRSNGSKLWNFNYRHPVTKKRINMGL  60
            M  ++ +L++  +K++KP EK+Y LFDG+GL++R+++NGSK W FNY +P   KR N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GTFPEVSLAQARKSSVEAREALAHGIDPKEKRDAVLQAKQAATEHTLQNVATSWYELKKD  120
            G +P++SL QARKS + A+E +A+GIDP++ R    Q  +   EHT++NV+  W+ +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  GVTPAYAEDIWRSLTLHIFPDLGSTPISAIRAPQVINLLRPLETKGSLETVKRLTQRLNE  180
            +VTP YA DIWRSL LHIFP+++  P+ AI AP++I+LL+P+E+KGSLETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTYGVNSGLIHANPLSGIRSVFKKPKKKNMAALPPDELKELMVAIANASIKRTTRCLIE  240
            +M ++ N GLI+ANPL+GI++ FKKPKK NMAAL P EL ELM AIANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPVEAATTRWADIDIEKKIWTIPAERMKKRRTHIVPLTEQSLALLEAIKPYSG  300
            WQLHTMTRP EA+ +RW +I+ E K+WTIPAERMKKRR H +PLTEQ LALLE +KP SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPADRNPRTHCNSQTANMALKRMGFEGRLVSHGMRSMASTILNEHGWDPELIEVA  360
            HR+++FP+DR P+  CNSQTANMALKRMGF GRLVSHG+RS+AST LNE+G DP+L+E A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKDEVRSAYNRADYIERRRPMMAWWSDHIQEAATGNLSVSAIRENQDK  412
            LAHVD ++VRSAYNR+DY+ERR+PMM WWS+HI+EAA G+LSV++ ++ ++K
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNK  412

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  477 bits (1797),  Expect = 7e-136, Method: Compositional matrix adjust.
 Identities = 259/406 (64%), Positives = 337/406 (84%), Gaps = 1/406 (0%)

Query  1    MCAQPTRLSDLKVKAAKPKEKDYTLTDGNGLQMRLRNNGSKLWNFNYIHPVTKKRINMGL  60
            M  +  +L+D  +KA+KP+EK+Y L DG+GL++R++ NGSK W FNY +P   KR N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GTFPEVSLAQARKRTVEARELVAQGLDPKEQRETDRQLKKAATEHTFQNVATAWFELKKD  120
            G +P++SL QARK  + A+EL+AQG+DP+++R  ++Q+ K   EHTF+NV+  WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTTAYAEDIWRSLTLHVFPDLGPTPISAITAPMVINLLRPLETKGSLETVKRLTQRLNE  180
             VT  YA DIWRSL LH+FP+++  P+ AITAP +I+LL+P+E+KGSLETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTYGVNYGLIHANPLSGIRSVFKKPKKKNMAALPPDELNELMVAIANASIKRTTRCLIE  240
            +M ++ N GLI+ANPL+GI++ FKKPKK NMAAL P EL ELM AIANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAEAATTRWADIDFERKIWTIPAERMKKRRTHFIPLTEQALALLEAIKPYSG  300
            WQLHTMTRPAEA+ +RW +I+ E K+WTIPAERMKKRR H IPLTEQ LALLE +KP SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NRDYVFPADRNPRTHCNSQTANMALKRMGFEGRLVSHGMRSMASTILNEHGDWNPELIEV  360
            +RD++FP+DR P+  CNSQTANMALKRMGF GRLVSHG+RS+AST LNE+G  +P+L+E 
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDPDLVES  359

Query  361  ALAHVDKDEVRSAYNRADYIERRRPMMNWWSDHILQAASGSLSVSA  406
            ALAHVD ++VRSAYNR+DY+ERR+PMM WWS+HI +AA GSLSV++
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTG  405

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  476 bits (1794),  Expect = 1e-135, Method: Compositional matrix adjust.
 Identities = 255/412 (62%), Positives = 338/412 (83%), Gaps = 0/412 (0%)

Query  1    MGAATTRLSDLKVKAAKPKEKDYTLTDGNGLQMRVRINGSRLWNFNYIHPITKKRLNMGL  60
            M+  T +L+D  +KA+KP+EK+Y L DG+GL++R++ NGS+ W FNY +P   KR N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GTFPEVSLAQARKLTIEARELVAQGIDPKErrdadrqakkaaTEHTLQNVATSWYELKKD  120
            G +P++SL QARK  + A+EL+AQGIDP++ R  ++Q  K   EHT++NV+  W+ +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  AVTPAYAEDIWRSLTLHVFPDLGVTPIASITAPKVISLLKPLETKGSLETVKRLTQRLNE  180
             VTP YA DIWRSL LH+FP+++  P+ +ITAP +I LLKP+E+KGSLETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTYGVNSGLIPANPLTGIGSVFKKPKKKNMPALHPDELKELMVAIANASIKRTTRCLIE  240
            +M ++ N GLI ANPLTGI + FKKPKK NM+AL P EL ELM AIANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPVEAATTRWADIDFEKRIWTIPAERMKKRRPHTVPLTDQALAILEAIKPYSG  300
            WQLHTMTRP EA+ +RW +I+ E ++WTIPAERMKKRR H +PLT+Q LA+LE +KP SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPADRNPRTHCNSQTANMALKRMGFEGRLVSHGMRSMASTTLNEHGWEPELIEVA  360
            HR+++FP+DR P+  CNSQTANMALKRMGF GRLVSHG+RS+ASTTLNE+G +P+L+E A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKDEVRSAYNRADYIDRRRPMMAWWSEHIQKAATGNLSAAAINQLGDR  412
            LAHVD ++VRSAYNR+DY++RR+PMM WWSEHI+ AA G+LS ++ +QL ++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNK  412

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  448 bits (1688),  Expect = 3e-127, Method: Compositional matrix adjust.
 Identities = 251/416 (61%), Positives = 333/416 (81%), Gaps = 0/416 (0%)

Query  1    MPTNATRLSDRQLKAVKATGKDFVLSDGDGLQLRVRASGSMMWNFNYREPLTRSRLNMAL  60
            M+ N+ +L+D+++KA K+  K++ L DGDGL+LR++++GS  W FNY  P    R N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPDLSLANARKKAVEARELLAQGIDPKAQRDEQRQARLAETEHTFEKIATAWFELKKD  120
            G YPD+SL +ARK  + A+EL+AQGIDP+ +R  Q+Q +    EHTFE+++  WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPAYAEDIWRSLTLHVFPSMKSTPLSEVSAPMVIKLLRPIEAKGSLETVKRLSQRLNE  180
             VTP YA DIWRSL LH+FP +   P+  ++AP +I LL+PIEAKGSLETVKRL+QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTYGVNSGLIFANPLSGIRAVFKKPRKENMAALRPDELPELMMEIANASIKRVTRCLIE  240
            +M ++ N GLI ANPL+GI+A FKKP+KENMAAL P ELPELM  IANASIKR TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPVEAATTRWADIDFDKRIWTIPPERMKKRRPHTIPlteqalalletlKPHSG  300
            WQLHTMTRP EA+ +RW +I+ + ++WTIP+ERMKKRR H IPLTEQ LALLE +KP SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPADRNPRTHANSQTANMALKRMGFQDRLVSHGMRSMASTILNEHGWDPELIEVA  360
            HR+++FP+DR P+   NSQTANMALKRMGF +RLVSHG+RS+AST LNE+G DP+L+E A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHIDKDEVRSAYNRADYIERRRPMMVWWSEHIQKAATGNLSASAINQTRDHNVAP  416
            LAH+D ++VRSAYNR+DY+ERR+PMM WWSEHI+ AA G+LS ++ +Q ++   +P
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLPPP  416

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  448 bits (1686),  Expect = 4e-127, Method: Compositional matrix adjust.
 Identities = 244/404 (61%), Positives = 331/404 (82%), Gaps = 0/404 (0%)

Query  1    MAVITTPLTNTQIKNQKPGPKDIVLSDGGGLQLRVRTNGSKLWNYNYYHPVTKKRVNIGI  60
            MA  T  LT+ +IK  KP  K+  L DG+GL+LR++ NGSK W +NYY+P   KR N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPDIPLAKAREIALEYRQLVACGVDPKSKREQESLKLKQEVLYTLKNVAAEWLEIKKS  120
            G YPDI+L +AR   L  ++L+A G+DP+  R ++    K+    T+ NV+ +W+ IK++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  EVTKSHAAKTWSSLESHVFPELGDTPLNKITAPLVIKVFRPIEAKGSLETIKRLSQRLNE  180
            +VT   A   W SLE H+FP+++D P++ ITAP +I +++PIEAKGSLET+KRL+QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMNFGVNCGYIDSNPLVGIRAAFKKPKKESMATLTPSELPLLMRHLSQASIKRVTRCLIE  240
            +MNF+ NCG I++NPL GI+AAFKKPKKE+MA+LTP+ELP LM  +++ASIKR TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPSEAATARWDELDLDNLTWTIPAEKMKRRREHVIPLTQQMLGILDAIKPISG  300
            WQLHTMTRP+EA+ ARWDE++ ++  WTIPAE+MK+RREH IPLT+QML++L+ +KPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HRDYIFPADRDPKSHCNTQTANVALKRMGLKGKLVSHGMRALASTTLNEQGFESDLIEAA  360
            HRD+IFP+DR PK  CN+QTAN+ALKRMG+ G+LVSHG+R+LASTTLNEQGF++DL+E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LSHVDANQVRAAYNRSDFLERRRPMMSWWSKHIEEASQGNLSVS  404
            L+HVD NQVR+AYNR+D+LERR+PMM WWS HIEEA++G+LSV+
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVT  404

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  443 bits (1668),  Expect = 1e-125, Method: Compositional matrix adjust.
 Identities = 254/412 (62%), Positives = 332/412 (81%), Gaps = 0/412 (0%)

Query  1    MPAQNLRLSDRQLKGVKPASKDYVLTDGDGLQLRVRSNGSLLWNFNYREPVTKKRINIGF  60
            M+ + ++L+D+++K+ KP  K+Y L DGDGL+LR+++NGS  W FNY  P   KR N++F
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GTYPELSLANARKKAVDARELLAQGIDPKVQRNTLNEAKRAETEHTFENVATAWFELKKD  120
            G YP++SL +ARK  + A+EL+AQGIDP+ +R+  ++  +   EHTFENV+  WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPAYAEDIWRSLTLHVFPDLKTTPLTKITAPMVIAMLRPIEAKGSLETVKRLSQRLNE  180
             VTP YA DIWRSL LH+FP++   P+  ITAP +I +L+PIEAKGSLETVKRL+QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTYGVNSGLIFANPLSGIRAVFKKPKKENmaalppeelpelmleIANASIKRTTRCLIE  240
            +M ++ N GLI ANPL+GI+A FKKPKKENMAAL P ELPELM  IANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAEAATTRWADIDFERRVWTIPPERMKKRRPHSIPLSDHAVALLESLKTHSG  300
            WQLHTMTRPAEA+ +RW +I+ E +VWTIP+ERMKKRR H IPL+++ +ALLE +K  SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPADRNPRTHANSQTANMALKRMGFQDRLVSHGMRSMASTILNEHGWDPELIEVA  360
            HR+++FP+DR P+   NSQTANMALKRMGF +RLVSHG+RS+AST LNE+G DP+L+E A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKDEVRSAYNRADYIERRRPMMTWWSEYIQKAATGSLLASAYGQVRVK  412
            LAHVD ++VRSAYNR+DY+ERR+PMM WWSE I+ AA GSL  ++  Q++ K
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNK  412

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  440 bits (1659),  Expect = 6e-125, Method: Compositional matrix adjust.
 Identities = 258/411 (63%), Positives = 331/411 (81%), Gaps = 1/411 (0%)

Query  1    MARLTKPLSDTEIKTAKPKDKEYNLADGGGLQIRIKPNGSKLWLLNYSHPITKKRQNLSL  60
            MA+ T  L+D EIK++KP++KEYNL DG+GL++RIKPNGSK W++NY +P   KR NLS+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GTYPDISLLSARKLAQEARTLLAHGTDPkahreaqiaakaaiiehTFGKIAAEWFERKKD  120
            G YPDISLL ARK    A+ L+A+G DP+ +R  Q      I EHTF +++ +WF  K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  EVTEDHAAATWRSFKLHLLPSLKDIPISQITAPMVIEFLRPIEAKGNLETVKRLTQRLNE  180
            +VT D A   WRS+ LH++P + D P+  ITAP +IE+L+PIEAKG+LETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAVNTGLIHANPLSGIKAIFKKPRKEHLAALKPDELPELMQAIANASIKKVTRFLIE  240
            VM +A N GLI+ANPL+GIKA FKKP+KE++AAL P ELPELM AIANASIK+ TR L+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPNEAAAARWDEINFDERIWLIPAARMKMRRDHQIPLTEQTLALLAAIKPISG  300
            WQLHTMTRP EA++ARWDEIN +E++W IPA RMK RR+H+IPLTEQ LALL  +KPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYIFPADRDPKTHSNVQTANAALKRMGLKDRTTAHGFRSLASTTLNEQGFDPDVIEAA  360
            HR++IFP+DR PK   N QTAN ALKRMG+ +R  +HG+RSLASTTLNEQGFDPD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHTDKNQVRSAYNRSIYLDRRREMMTWWSNYIVEAAKGNVSLAHNARNLR  411
            LAH D NQVRSAYNR+ YL+RR+ MM WWS+ I EAA+G++S++  +++L+
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVT-GTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  440 bits (1657),  Expect = 9e-125, Method: Compositional matrix adjust.
 Identities = 248/412 (61%), Positives = 334/412 (82%), Gaps = 0/412 (0%)

Query  1    MCAQTARLSDRQLKAVKPKDKDYVLTDGDGLQLRVRVNRSMQWNFNYRHPVTKNRINMAL  60
            M  +T +L+D+++KA KP++K+Y L DGDGL+LR++ N S QW FNY +P   +R N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPEVSLAQARRKAVEAREILAQGIDPKAQRNELAQAKRVETELTFEKVATAWFELKKD  120
            G YP++SL QAR+  + A+E++AQGIDP+ +R+   Q  +   E TFE+V+  WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPAYAEDIWRSLTLHVFPNMKSTPISEVSAPMVIKLLRPIEAKGSLETVKRLCQRLNE  180
             VTP YA DIWRSL LH+FP++   P+  ++AP +I LL+PIEAKGSLETVKRL QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTYGVNSGMIFANPLSGIRAVFKKPKKENmaalppeelpelmleIANASIKRTTRCLIE  240
            +M ++ N G+I ANPL+GI+A FKKPKKENMAAL P ELPELM  IANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAEAATTRWADIDFERRVWTIPPERMKKRRPHSIPLSNQTMALLEVLRSHSG  300
            WQLHTMTRPAEA+ +RW +I+ E +VWTIP+ERMKKRR H IPL++Q +ALLEV+++ SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPADRNPRTHANSQTANMALKRMGFQDRLVSHGMRSMASTILNEHGWDPELIEVA  360
            HR+++FP+DR P+   NSQTANMALKRMGF +RLVSHG+RS+AST LNE+G DP+L+E A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKDEVRSAYNRADYIERRRPMMAWWSEYIQRASAGNLSASAINVIRDR  412
            LAHVD ++VRSAYNR+DY+ERR+PMM WWSE I+ A+ G+LS ++ + ++++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNK  412

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  439 bits (1653),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 246/406 (61%), Positives = 332/406 (82%), Gaps = 0/406 (0%)

Query  1    MARITKPLTNTEVQQAKPTDKEYILSDGEGLRLRVKPNGSKLWIFNYIKPATKKRANISF  60
            MA+ T  LT+ E++ +KP +KEY L DG+GLRLR+KPNGSK WIFNY +P+  KRAN+SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GVYPDLSLKEARIKRKEAREMLALDIDPAIHRAetknkekeehentLIHVAEQWFRVKKI  120
            G+YPD+SL +AR     A+E++A +IDP  +R   ++ +KE HE+T+ +V+ +WF +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SISADYAQDIWRSLEKHIFPEIGKAPISRLRAPMVINVIRPIEAKGSLETVKRIIQRLNE  180
             +++DYA DIWRSLE HIFP+I+  P+  + AP +I++++PIEAKGSLETVKR+ QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIFAVNSGTIDSNPLAGIGKVFQAPQKQNMPSIPPSELPVFISKVANASIKLTTRCLIE  240
            +M FA N G I++NPL+GI   F+ P+K+NM+++ P+ELP ++S +ANASIK TTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMVRPGEAAGTRWDEINFDSEIWSIPAGRMKKKRPHVVPLTKQALKLLEVMRPISG  300
            WQLHTM RP+EA+G+RWDEIN +  +W+IPA RMKK+R H +PLT Q L LLEVM+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPSDRNPKTHANPYSANVALKRMGFHKKLVAHGLRSIASTALNEHGFDPDIIESA  360
            HR+++FPSDR PK   N+ +AN+ALKRMGF  +LV+HGLRS+AST+LNE+GFDPD++ESA
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDRNQVRAAYNRTDYLERRKKMMAWWSSHIEEAGKGNLTLGGS  406
            LAHVD NQVR+AYNRTDYLERRK MM WWS HIEEA++G+L++ G+
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGT  406

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  436 bits (1643),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 245/412 (60%), Positives = 331/412 (81%), Gaps = 0/412 (0%)

Query  1    MCAQTARLSDRQLKAVKPKDKDYVLTDGDGLQLRVRVNRSMQWNFNYRHPVTKNRINMAL  60
            M  +T +L+D+++KA KP++K+Y L DGDGL+LR++ N S QW FNY +P   +R N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPEVSLAQARRKAVEAREVLAQGIDPKAQRNDLAQAKLAETEHTFEKVASAWFELKKD  120
            G YP++SL QAR+  + A+E++AQGIDP+ +R+   Q      EHTFE+V+  WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPAYAEDIWRSLTLHVFPSMKSTPISEVSAPMVIKILRPIESKGSLETVKRLSQRLNE  180
             VTP YA DIWRSL LH+FP +   P+  ++AP +I +L+PIE+KGSLETVKRL+QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTYGVNSGMIFANPLSGIRAVFKKPKKENmaalppeelpelmleIANASIKRTTRCLIE  240
            +M ++ N G+I ANPL+GI+A FKKPKKENMAAL P ELPELM  IANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAEAATTRWVDIDFERRVWTIPPERMKKSRPHSIPLSDQAMSLLEILKSHSG  300
            WQLHTMTRPAEA+ +RW +I+ E +VWTIP+ERMKK R H IPL++Q ++LLE++K+ SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPADRNPRTHANSQTANMALKRMGFQDRLVSHGMRSMASTILNEHGWDPELIEVA  360
            HR+++FP+DR P+   NSQTANMALKRMGF +RLVSHG+RS+AST LNE+G DP+L+E A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKDEVRSAYNRADYIERRRPMMAWWSEYILKASTGNLSASAMNVARDR  412
            LAHVD ++VRSAYNR+DY+ERR+PMM WWSE I  A+ G+LS ++ +  +++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNK  412

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  436 bits (1643),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 245/412 (60%), Positives = 331/412 (81%), Gaps = 0/412 (0%)

Query  1    MCAQTARLSDRQLKAVKPKDKDYVLTDGDGLQLRVRVNRSMQWNFNYRHPVTKNRINMAL  60
            M  +T +L+D+++KA KP++K+Y L DGDGL+LR++ N S QW FNY +P   +R N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPEVSLAQARRKAVEAREVLAQGIDPKAQRNDLAQAKLAETEHTFEKVASAWFELKKD  120
            G YP++SL QAR+  + A+E++AQGIDP+ +R+   Q      EHTFE+V+  WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPAYAEDIWRSLTLHVFPSMKSTPISEVSAPMVIKILRPIESKGSLETVKRLSQRLNE  180
             VTP YA DIWRSL LH+FP +   P+  ++AP +I +L+PIE+KGSLETVKRL+QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTYGVNSGMIFANPLSGIRAVFKKPKKENmaalppeelpelmleIANASIKRTTRCLIE  240
            +M ++ N G+I ANPL+GI+A FKKPKKENMAAL P ELPELM  IANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAEAATTRWVDIDFERRVWTIPPERMKKSRPHSIPLSDQAMSLLEILKSHSG  300
            WQLHTMTRPAEA+ +RW +I+ E +VWTIP+ERMKK R H IPL++Q ++LLE++K+ SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPADRNPRTHANSQTANMALKRMGFQDRLVSHGMRSMASTILNEHGWDPELIEVA  360
            HR+++FP+DR P+   NSQTANMALKRMGF +RLVSHG+RS+AST LNE+G DP+L+E A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKDEVRSAYNRADYIERRRPMMAWWSEYILKASTGNLSASAMNVARDR  412
            LAHVD ++VRSAYNR+DY+ERR+PMM WWSE I  A+ G+LS ++ +  +++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNK  412

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  432 bits (1627),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 251/406 (62%), Positives = 331/406 (82%), Gaps = 0/406 (0%)

Query  4    NGTKQISDTEIRAAKPKEKEYNLFDGLGLRLRIKPNGSKLWLLNYTRPTDKKRTNLSLGS  63
            + T +++D EI+A+KP+EKEYNLFDG GLRLRIKPNGSK W++NY RPT+ KR+NLS+G 
Sbjct  3    KNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGM  62

Query  64   YPEISLAKARALVLDARTLLAQNIDPKIHKDQTVAAETALKVNTFEKVAGDWYEIKRDSI  123
            YP+ISL +AR  +L A+ L+AQ IDP+ ++ +    +  +  +TFE+V+ DW+ IK++ +
Sbjct  63   YPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDV  122

Query  124  TAEHAAKTWSSLELHILPYLGKTPIGQITAPMVIKIFRPLEAKGTLETVKRLSQRINEIM  183
            T++ A   W SLELHI+P ++  P+  ITAP +I +++P+EAKG+LETVKRL+QR+NE+M
Sbjct  123  TPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVM  182

Query  184  IFAVNTGLIHANPLSGIKAAFKKPKKQNMAAMPPAELPELMRTIANASIRRTTRFLIEWQ  243
             FA N GLI+ANPL+GIKAAFKKPKK+NMAA+ PAELPELM +IANASI+RTTR L+EWQ
Sbjct  183  NFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQ  242

Query  244  LHTMTRPNEAAAARWDEIDINERLWVIPAERMKMNREHIIPLSDECLAILKALKLISGNR  303
            LHTMTRP EA++ARWDEI+ +E++W IPAERMK  REH IPL+++ LA+L  +K ISG+R
Sbjct  243  LHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHR  302

Query  304  EYLFPADRDPKTHCNVQTANAALKRMGLQDRTTAHGLRSLASTTLNEQGFDWDVVEAALA  363
            +++FP+DR PK  CN QTAN ALKRMG+ +R  +HGLRSLASTTLNEQGFD D+VE+ALA
Sbjct  303  DFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALA  362

Query  364  HTDRNQVRSAYNRAKYLERRKEMMDWWSKHIVKAAISNASLAISKE  409
            H D NQVRSAYNR+ YLERRK MM WWS HI  AA ++ S++ +K+
Sbjct  363  HVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQ  408

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  420 bits (1582),  Expect = 7e-119, Method: Compositional matrix adjust.
 Identities = 230/409 (57%), Positives = 316/409 (78%), Gaps = 0/409 (0%)

Query  1    MPRKTTPLTATQVSNAKPKEKVYSLSDGGGLQLVVKPIGSKLWQFDYYHPATKKRARLSF  60
            M+++T  LT  ++  +KP+EK Y+L DG+GL+L +KP GSK W F+YY+P+  KRA LSF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPEVSLAIARKQREECRKLVLQGTDPKAHRDNERLQERLAHTDTLKASAKAWFEIKKT  120
            G YP++SL  ARK     + L+ QG DP+ +R  ++  ++  H +T+   +K WF IK+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  TITPNYADDIWRSLERHIFPKLGSAPVSKLTAPQIIEVLTPIAAKGSLETVKRLCQRLNE  180
             +TP+YA DIWRSLE HIFP ++  PV  +TAP+IIE+L PI AKGSLETVKRL QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  ILIWAVNTGKLPSNPISGIRYNFQAPQKKNMPALRPEELPELMRALNTASIKLTTRCLIE  240
            ++  A N G + +NP++GI+  F+ P+K NM+AL P ELPELM A+  ASIK TTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTLTRPSEAAGAEWSEIDEVHKIWRIPAIRMKKRRDHAVPLTPSMLNLLNIMRPISG  300
            WQLHT+TRP+EA+GA W EI+  +K+W IPA RMKKRR+H +PLT  ML LL++M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  DSEYIFPADRSPRKHTNEQTANMALKRMGFKDRLVAHGLRSIGSTALNEQGFESDLIEAA  360
            + ++IFP+DR+P+K  N QTANMALKRMGF +RLV+HGLRS++ST+LNEQGF++DL+E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKDDVRAAYNRAEYIERRRPMMEWWSTLIISASSGGTSLANVTNM  409
            LAHVD ++VR+AYNR++Y+ERR+PMM WWS  I  A+ G+ S++   ++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQL  409

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  418 bits (1573),  Expect = 4e-118, Method: Compositional matrix adjust.
 Identities = 253/412 (62%), Positives = 328/412 (80%), Gaps = 0/412 (0%)

Query  1    MPTNATRLSDRQLKAVKATGKDFVLSDGDGLQLRVRASGSMMWNFNYREPLTRSRLNMAL  60
            M+ N+ +L+D+++KA K+  K++ L DGDGL+LR++++GS  W FNY  P    R N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPDLSlanarkkaaearellalGIDPKTQRDEVRQAKLAETEHTFEKVATAWFELKKD  120
            G YPD+SL +ARK    A+EL+A GIDP+ +R   +Q      EHTFE+V+  WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTKAYAEDIWRSLTLHVFPSMKTTPLSQITAPMVIKILRPIEAKGSLETVKRLSQRLNE  180
             VT  YA DIWRSL LH+FP +   P+  ITAP +I +L+PIEAKGSLETVKRL+QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTYGVNSGLIFANPLNGIRAVFKKPKKENmaalppeelpelmmeiaNASIKRTTRCLIE  240
            +M ++ N GLI ANPL GI+A FKKPKKENMAAL P ELPELM  IANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAEAATTRWADIDFDKRIWTIPPERMKKRRPHTIPLTDQALSLLETLKQLSG  300
            WQLHTMTRPAEA+ +RW +I+ + ++WTIP+ERMKKRR H IPLT+Q L+LLE +K +SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREYVFPSDRNPRTHANSQTANMALKRMGFQDRLVSHGLRSMASTILNEHGWDPELIEVA  360
            +R+++FPSDR P+   NSQTANMALKRMGF +RLVSHGLRS+AST LNE+G DP+L+E A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKDEVRSAYNRTDYIERRRPMMAWWSEHIQKAATGSLSASAINQTRDR  412
            LAHVD ++VRSAYNRTDY+ERR+PMM WWSEHI+ AA GSLS ++ +Q +++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNK  412

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  417 bits (1570),  Expect = 6e-118, Method: Compositional matrix adjust.
 Identities = 252/412 (62%), Positives = 327/412 (80%), Gaps = 0/412 (0%)

Query  1    MPTNATRLSDRQLKAVKATGKDFVLSDGDGLQLRVRASGSMMWNFNYREPLTRSRINMAL  60
            M+ N+ +L+D+++KA K+  K++ L DGDGL+LR++++GS  W FNY  P    R N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPDLSlanarkkaaearellalGTDPKTQRDEVRQAKLAETEHTFEKVATAWFELKKD  120
            G YPD+SL +ARK    A+EL+A G DP+ +R   +Q      EHTFE+V+  WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTKAYAEDIWRSLTLHVFPSMKTTPLSQITAPMVIKILRPIEAKGSLETVKRLSQRLNE  180
             VT  YA DIWRSL LH+FP +   P+  ITAP +I +L+PIEAKGSLETVKRL+QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTYGVNSGLIFANPLNGIRAVFKKPKKENmaalppeelpelmmeiaNASIKRTTRCLIE  240
            +M ++ N GLI ANPL GI+A FKKPKKENMAAL P ELPELM  IANASIKRTTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAEAATTRWADIDFDKRIWTIPPERMKKRRPHTIPLTDQALSLLETLKQLSG  300
            WQLHTMTRPAEA+ +RW +I+ + ++WTIP+ERMKKRR H IPLT+Q L+LLE +K +SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREYVFPSDRNPRTHANSQTANMALKRMGFQDRLVSHGLRSMASTILNEHGWDPELIEVA  360
            +R+++FPSDR P+   NSQTANMALKRMGF +RLVSHGLRS+AST LNE+G DP+L+E A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKDEVRSAYNRTDYIERRRPMMAWWSEHIQKAATGSLSASAINQTRDR  412
            LAHVD ++VRSAYNRTDY+ERR+PMM WWSEHI+ AA GSLS ++ +Q +++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNK  412

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  409 bits (1539),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 223/410 (55%), Positives = 310/410 (76%), Gaps = 0/410 (0%)

Query  1    MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF  60
            MAK  V LT+ ++K +K  +KEY L DGDGL+LR+K NG+K WI++Y +P   KR N+SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKFSDRWLALKKE  120
            G +PD+SL +ARK    AK L+A  IDP++++  Q   ++   E+TF + +  W+A+K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINE  180
             V P+ A    R+LE HI+P +++ P++ I +  ++ +L P+ A+G+LETVKRL + +NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIAGANITLSTRCLLE  240
            VM +A   G I+ N L++I   F  PK+++M ++ P  LPELM AIA A+I  +TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPIESATARWQDIDFENKVWVVPEERMKMKRPHTIPLTEQTLALLEIMKPISG  300
            WQLHTMTRP E++ ARW++I+ E+KVW +P ERMK +R H IPLTEQ LALLE+MKPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREFIFPSNKNPKSHVNSQSANMALKRMGFEGQLVSHGLRALASTTLNEQGFNPDVIEAA  360
            HR+FIFPS++ PK   NSQ+ANMALKRMGF G+LVSHGLR+LASTTLNEQGF+PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRKAYNRAEYLEQRRKLMCWWSDHITASAEGNVSLVRQKGLK  410
            LAHVD N+VR AYNR++YLE+R+ +MCWWS+HI  +A G++S+   K LK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  407 bits (1531),  Expect = 7e-115, Method: Compositional matrix adjust.
 Identities = 220/404 (55%), Positives = 308/404 (77%), Gaps = 0/404 (0%)

Query  1    MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF  60
            MAK  V LT+ ++K +K  +KEY L DGDGL+LR+K NG+K WI++Y +P   KR N+SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKFSDRWLALKRE  120
            G +PD+SL +ARK    AK L+A  IDP++++  Q   ++   E+TF + +  W+A+K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVKPETADKAYRALEKHILPKLGDVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINE  180
             V P+ A    R+LE HI+P ++D P++ I +  ++ +L P+ A+G+LETVKRL + +NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIAGANITLSTRCLLE  240
            VM +A   G I+ N L++I   F  PK+++M ++ P  LPELM AIA A+I  +TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPIESATARWQDIDFENKVWVVPEERMKMKRPHTIPLTDQTLALLEIMKPISG  300
            WQLHTMTRP E++ ARW++I+ E+KVW +P ERMK +R H IPLT+Q LALLE+MKPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREFIFPSNKDPKSHVNSQSANMALKRMGFEGQLVSHGLRALASTTLNEQGFNPDVIEAA  360
            HR+FIFPS++ PK   NSQ+ANMALKRMGF G+LVSHGLR+LASTTLNEQGF+PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRKAYNRAEYLEQRRKLMCWWSDHITASAEGNVSLA  404
            LAHVD N+VR AYNR++YLE+R+ +MCWWS+HI  +A G++S++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVT  404

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  403 bits (1516),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 214/410 (53%), Positives = 313/410 (77%), Gaps = 0/410 (0%)

Query  1    MARKVKPLTNTEVKQAKPKDKIYKLSDGDGLQLRIMPNGSKQWLLDYFKPYTKKRTSFSL  60
            MA++   LT+ E+K +KP++K Y+L DGDGL+LRI PNGSKQW+++Y++P   KR+++S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPDVTLANARAKRASSRELLAQDIDPKEHKEDHHREQLLIASHTLKSVAEDWFAIKKT  120
            G YPD++L +AR    S++EL+AQ+IDP++++  +++ +  I  HT+ +V+ DWFAIK+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  TITEVTAKSLWRKFENHVFPKLGHRPIDKILAPEAIEALKPLAAKGNLETTGKIIGHLNN  180
             +T   A  +WR +E H+FP ++++P+  I APE IE LKP+ AKG+LET  ++  +LN+
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTHAVNTGILHHNPLSGIRSAFSAPKVTNMPTIKPNELGKLMKVISYASIKLVTRCLIE  240
            +M  A N G+++ NPL+GI++AF  PK  NM+++ P EL  LM  I+ ASIK  TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPSESAKAEWSEIDLENRLWVIPAERMKMRLEHKVPLTKQSIEILERLKPITG  300
            WQLHTMTRP+E++ A W EI+ E+++W IPAERMK R EH++PLT Q + +LE +KPI+G
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HRTHLFPSHINHHKHCNVETANKALIRMGYKNRLVAHGLRALASTTLNEQEFNADVIESA  360
            HR  +FPS+    K CN +TAN AL RMG+  RLV+HGLR+LASTTLNEQ F++D++ESA
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LSHVDKNEVRRAYNRAEYLDSRRELMCWWSEHIEQAVSGNLPVSTLKEQK  410
            L+HVD N+VR AYNR++YL+ R+ +MCWWSEHIE+A  G+L+V+  K+ K
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  399 bits (1502),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 215/410 (53%), Positives = 316/410 (78%), Gaps = 2/410 (0%)

Query  1    MPRVATPLTDSKIQSAKPREKDYKLSDGRGLHLRVRAGGTKDWIFRYQVPFSGTRKDMSF  60
            M++ +  LTD  I+++KPREK+Y+L DG GL+LR+++ G+K+WIF Y  P +G R ++SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GIYPTVGLADAREKRKNAHKLLSKDIDPKSHKAEVKRTATQDKANSFTCITLDWLRVKST  120
            G+YP ++L +AR    +A  L++++IDP+ ++   ++   +   ++F  +T DW+ +K  
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  KVTAKYAVQIEASLRNHVFPHIGKRPVKELTPSEVIEFLRPIEAKGSKETIKRLCQRINE  180
             VT+ YA++I  SL  H+FPHI+ +PVK +T++E+IE+L+PIEAKGS ET+KRL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMDYAVNTGLIDINPLSKIHKAFLSPNPKHLPTIKPEELPQLMQSLSTASIKLVTRTLIE  240
            VM++A N GLI+ NPL+ I  AF  P+  +++++ P ELP+LM +++ ASIK  TR L+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMVRPSEAATAKWSEIDLDNQTWTIPADKMKKKNNGDHVVPLTPQTLALLDFIKPI  300
            WQLHTM RP+EA+ A+W EI+ +++ WTIPA++MKK+   +H +PLT Q LALL+ +KPI
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRR--EHRIPLTEQMLALLEVMKPI  298

Query  301  SGHREFIFPADRNPKTHTNTQTANMALKRMGYHKTLVAHGLRSLASTTLNERAFAPDVIE  360
            SGHR+FIFP+DR PK   N+QTANMALKRMG+   LV+HGLRSLASTTLNE++F PD++E
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  361  ACLAHIDSNSVRRAYNRTDYLERRRKVMNWWSAHVEQAATGNMSLANTNK  410
            + LAH+D N VR AYNRTDYLERR+ +M WWS H+E+AA G++S++ T++
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQ  408

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  399 bits (1501),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 225/389 (58%), Positives = 296/389 (77%), Gaps = 0/389 (0%)

Query  5    NLKAKQVDSAKPKAKEYNLTDGGGLTLRIKPSGGKFWLYNYTAPITKKRKNMGLGSYPDI  64
            +L  K++ ++KP+ KEYNL DG+GL LRIKP+G+K W++NY  P   KR N+++G YPDI
Sbjct  7    KLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDI  66

Query  65   SLKTARERHKKYKALVLENIDPIHQRQLDEKQAQETHLQTFKAVSLMWFEKKKTEIKPQT  124
            SL  AR      K L+ + IDP ++R+ +++  +E H +TF  V+  WF  K+ ++ P+ 
Sbjct  67   SLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDY  126

Query  125  AQAALNLLTNHAFPAFGDEPISKLKAFQVIELVRPIEAKGSLETVKRLCQRINEVMVHAV  184
            A      L  H FP ++D P+  + A ++IEL++PIEAKGSLETVKRL QR+NEVM  A 
Sbjct  127  ALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFAT  186

Query  185  NCGLIEANPLANIRQAFQAPKKSAMPSIEVDRLPELMSALNRASIKLTTRCLIEWQLHTM  244
            NCGLI+ANPL+ I+ AF+ PKK  M+++    LPELMSA+  ASIK TTRCL+EWQLHTM
Sbjct  187  NCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTM  246

Query  245  TRPNEAATAKWQDIDLNTGVWVIPAEQMKKGKEQRIPLTPQALALLELMKPISAHREYVF  304
            TRP EA+ A+W++I+ +  VW IPAE+MKK +E+RIPLT Q LALLE+MKPIS+HR+++F
Sbjct  247  TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIF  306

Query  305  PADRDPRSHANVQTANAAIKRMGFKGELVAHGLRSLASTTLNAQGFDPDVIEAALAHVDT  364
            P+DR P+   N QTAN A+KRMGF G LV+HGLRSLASTTLN QGFDPD++E+ALAHVD 
Sbjct  307  PSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDD  366

Query  365  NEVRRAYNRTDYFERRKTMMCWWSEYIEN  393
            N+VR AYNRTDY+ERRK MMCWWSE IE+
Sbjct  367  NQVRSAYNRTDYLERRKPMMCWWSEHIEE  395

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  398 bits (1498),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 224/410 (55%), Positives = 306/410 (75%), Gaps = 1/410 (0%)

Query  1    MARQTKPLNNTEVKNAKATERALVLYDGDGLELQVTPGGSKLWRFRYYKPYTRKRAMISF  60
            MA++T  L + E+K +K+ E+   L+DGDGL L++ P GSK W F YY+P   KRA +SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPSVTLSEARQNREVARSLLSKDIDPQQHKKSEQLRQKSVSESTFEKVAAEWFKTKEA  120
            G YP ++L +AR++   A+ L++++IDPQ+++K +Q  +K + E TFE+V+ +WF  K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  AGLATHTLNDIWRSLSKYVFPHIGSMPISSITAQQFIAALEPTHAAGRLETVKRLTQRIN  180
               +  +L DIWRSL   +FPHI+  P+ +ITA ++I  L P +A G LETVKRLTQR+N
Sbjct  121  DVTPDYAL-DIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDFALNSGLVSSNPAARISRTFHKPKVKHRPALLPEQLPFLMKTLAFASIGRQTRCLI  240
            EVM+FA N GL+ +NP + I  +F KPK  + +AL P +LP LM ++A ASI R TRCL+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTMTRPAEAAMTRWDEINFETKEWRIPAGRMKMKREHVIPLSDQALGVLDVMKPIS  300
            EWQL TMTRPAEA+ +RWDEIN E K W IPA RMK +REH IPL++Q L++L+VMKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  QHRDFVFPGYRNPLEPMNSQTANMALKRMGFKDLLVAHGMRSIASTILNEKGFPPDVIEA  360
             HRDF+FP+ R P  P NSQTANMALKRMGF + LV+HG+RS+AST LNE+GF PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHIDTNEVRRAYNRAQYLEQRREMMTWWGEHVEEKSYGIMCVQSLKVL  410
            ALAH+D N+VR AYNR++YLE+R+ MM WW+EH+EE + G + V + K L
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQL  409

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  394 bits (1483),  Expect = 4e-111, Method: Compositional matrix adjust.
 Identities = 219/410 (54%), Positives = 308/410 (76%), Gaps = 0/410 (0%)

Query  1    MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF  60
            MAK  V LT+ ++K +K  +KEY L DGDGL+LR+K NG+K WI++Y +P   KR N+SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRE  120
            G +PD+SL +ARK    AK L+A  IDP++++  Q   ++   E+TF + +  W+++K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINE  180
             V P+ A    R+LE HI+P +++ P++ I +  ++ +L P+ A+G+LETVKRL + +NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLE  240
            VM +A   G I+ N L++I   F  PK+++M ++ P  LPELM AIANA+I  +TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISS  300
            WQLHTMTRP E++ ARW++I+  +KVW IPAERMK +R H IPLTEQ LALLE+MKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAA  360
            HR++IFPS++ PK   NSQ+ANMALKRMG+ G+LVSHGLR+LASTTLNEQGF+PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNTSLAERKVLK  410
            LAHVD N+VR AYNR++YLE+R+ +M WWS HI  A+  + S++  K LK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  394 bits (1483),  Expect = 4e-111, Method: Compositional matrix adjust.
 Identities = 219/410 (54%), Positives = 308/410 (76%), Gaps = 0/410 (0%)

Query  1    MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF  60
            MAK  V LT+ ++K +K  +KEY L DGDGL+LR+K NG+K WI++Y +P   KR N+SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRE  120
            G +PD+SL +ARK    AK L+A  IDP++++  Q   ++   E+TF + +  W+++K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINE  180
             V P+ A    R+LE HI+P +++ P++ I +  ++ +L P+ A+G+LETVKRL + +NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLE  240
            VM +A   G I+ N L++I   F  PK+++M ++ P  LPELM AIANA+I  +TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISS  300
            WQLHTMTRP E++ ARW++I+  +KVW IPAERMK +R H IPLTEQ LALLE+MKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAA  360
            HR++IFPS++ PK   NSQ+ANMALKRMG+ G+LVSHGLR+LASTTLNEQGF+PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNTSLAERKVLK  410
            LAHVD N+VR AYNR++YLE+R+ +M WWS HI  A+  + S++  K LK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  394 bits (1483),  Expect = 4e-111, Method: Compositional matrix adjust.
 Identities = 219/410 (54%), Positives = 308/410 (76%), Gaps = 0/410 (0%)

Query  1    MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF  60
            MAK  V LT+ ++K +K  +KEY L DGDGL+LR+K NG+K WI++Y +P   KR N+SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRE  120
            G +PD+SL +ARK    AK L+A  IDP++++  Q   ++   E+TF + +  W+++K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINE  180
             V P+ A    R+LE HI+P +++ P++ I +  ++ +L P+ A+G+LETVKRL + +NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLE  240
            VM +A   G I+ N L++I   F  PK+++M ++ P  LPELM AIANA+I  +TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISS  300
            WQLHTMTRP E++ ARW++I+  +KVW IPAERMK +R H IPLTEQ LALLE+MKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAA  360
            HR++IFPS++ PK   NSQ+ANMALKRMG+ G+LVSHGLR+LASTTLNEQGF+PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNTSLAERKVLK  410
            LAHVD N+VR AYNR++YLE+R+ +M WWS HI  A+  + S++  K LK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  394 bits (1482),  Expect = 5e-111, Method: Compositional matrix adjust.
 Identities = 231/413 (56%), Positives = 319/413 (78%), Gaps = 5/413 (1%)

Query  1    MSKD--KLTDSKLRTAKPEDKEYNLGDGDGLYLRIKPNGNKMWLFNYYRPDNKKRANLSF  58
            M+K+  KLTD  ++++KP +KEYNL DGDGL LRIKPNG+K W+FNYYRP N KRANLSF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  59   GPYPDVTlaaarerrrqarallSENIDPQTYLQEQIAITKARDEASSNTFVKIARQWLDM  118
            G YPD++L  AR     A+ L+++ IDPQ   +++    + + E   +TF +++++W+ +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQ---DDRKRQQQVHKEIHEHTFENVTKDWFAI  117

Query  119  KRHDVSEDYAEDTWRSLEMYILPELANKTIDLIRAPMVISLLRPLEADGKLETVRRLCQR  178
            K++DV+ DYA D WRSLE+ I+P++++K +  I AP +I LL+P+EA G LETV+RL QR
Sbjct  118  KQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQR  177

Query  179  VNEIMSYAVNHGLLDANPCADIRKVFKKPSKKHMPTIRPDELPLLMADIINGRLDATTRC  238
            +NE+M++A N GL++ANP ++I+  FKKP K +M+++ P ELP LM+ I N+ +  TTRC
Sbjct  178  LNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRC  237

Query  239  QIEWSLHTLVRPNESAGTRWDEIDLESKIWTIPAERMKMDRTHRIPLTKQAIALLERMKP  298
             +EW LHT+ RP E++G+RWDEI+ E K+WTIPAERMK  R HRIPLT Q +ALLE MKP
Sbjct  238  LLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKP  297

Query  299  ISGHRPHVFPSYRNPLGHIHEQTANAALKRLGYGGRLVAHGLRSLGSTTLNEQEFNPDVI  358
            ISGHR  +FPS R P    + QTAN ALKR+G++GRLV+HGLRSL+STTLNEQ F+PD++
Sbjct  298  ISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLV  357

Query  359  EAALSHADDNEIRRAYNRSDYFEQRIKMMQWWSDHIEAAAQGWFSLGGSKGLK  411
            E+AL+H DDN++R AYNR+DY+E+R  MM WWS+HIE AA+G +S+ G+K LK
Sbjct  358  ESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  394 bits (1482),  Expect = 6e-111, Method: Compositional matrix adjust.
 Identities = 247/401 (62%), Positives = 324/401 (81%), Gaps = 0/401 (0%)

Query  1    MPRMAKPLNDTEVRQAKPREKEYNLSDGNGLMLRVRPIGSKTWLLNYSRPTSRKRANLTL  60
            M++ +  L D E++ +KPREKEYNL DG+GL LR++P GSK W++NY RPT+ KRANL++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GTYPELTladarrkaldarklIAQDIDPQEHREGQRQALAAIHEHTFENVATQWFDIKKT  120
            G YP+++L +AR+  L A+ LIAQ+IDPQ++R  Q+Q    IHEHTFENV+ +WF IK+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  EITENHAASTWRSFKLHVLPYIGSTPISQITAPMVIEIFRPIEAKGSLETVKRLTQRLNE  180
            ++T + A   WRS+ LH++P I+  P+  ITAP +IE+++PIEAKGSLETVKRLTQRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMTYAVNTGLIHANPLSGIkaafkkpkkqkmaamapYELPELLSTLSRASIKRVTRLLIE  240
            VM +A N GLI+ANPL+GIKAAFKKPKK++MAA++P ELPEL+S+++ ASIKR TR L+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPNEAAGARWDEFNFDDRLWTIPAERMKMKREHVIPLSDACMLILQELKSISG  300
            WQLHTMTRP EA+GARWDE+N ++++WTIPAERMK +REH IPL++  + +L+ +K+ISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYLFPADRNPKTHSNVQTANAALKRMGLQDRTTAHGLRALASTTLNEQGFDWDVVEAA  360
            HR+++FP+DR PK   N QTAN ALKRMG+ +R  +HGLR+LASTTLNEQGFD D+VE+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHTDKNQVRSAYNRATYLERRREMMEWWSKSIKSAEANML  401
            LAH D NQVRSAYNR+ YLERR+ MM WWS  I  A    L
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  391 bits (1472),  Expect = 3e-110, Method: Compositional matrix adjust.
 Identities = 221/410 (54%), Positives = 311/410 (76%), Gaps = 0/410 (0%)

Query  1    MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQLRYYRPLTKQRTKQSF  60
            MA++T  LTD EIKA+KP++ +Y+L+DGDGL L IK++GSK W + YYRP   +R++ SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPTVSLSDARKLRAESRALLAKDIDPQEHQKEQVRNSQEAKTNTFMLVAERWWNVKKV  120
            G YP +SL +ARK    ++ L+A++IDPQ+++K Q +  +E   +TF  V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYADDIWRSLERDVFPAIGDISVTEIKAHTLVKAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  ++  ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISLSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWDEIDLEAREWKIPASRMKMNRDHTVPLSDEAIAVLEVMKSFSG  300
            WQL T+TRPAEA+ ARWDEI+ E + W IPA RMK  R+H +PL+++ +A+LEVMK++SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREFIFPSRIKPNQPMNSQTVNASLKRAGFGGVLVSHGLRSIASTALNEQGFPPDVIEAA  360
            +R+FIFPS   P++P NSQT N +LKR GF+G LVSHGLRS+AST+LNEQGF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEKRRPMMQWWADFVKSADNGSIVEIGSKRLK  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A  GS+   G+K+LK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  391 bits (1470),  Expect = 5e-110, Method: Compositional matrix adjust.
 Identities = 214/407 (53%), Positives = 304/407 (75%), Gaps = 1/407 (0%)

Query  1    MARQTKPLNNTEVKSAKATDRAITLYDGDGLELQVTPSGSKLWRFRYYKPFTRKRAMISL  60
            MA++T  L + E+K++K+ ++   L+DGDGL L++ P+GSK W F YY+P   KRA +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPSVSLAEARKLREDARLLLSKDVDPQEHKQAEQSRQKNATENTFEKVAAEWFKTKES  120
            G YP +SL +ARK    A+ L+++++DPQ++++ +Q  +K+  E+TFE+V+ +WF  K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  AGLATHTLNDIWRSMSKYVFPHIGSMPIANITAQRFIGALEPTHASGRLETVKRLSQRIN  180
               +  +L DIWRS+   +FPHI+  P+  ITA  +I  L P +A G LETVKRL+QR+N
Sbjct  121  DVTPDYAL-DIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDYALNSGLVSVNPAARIGRTFHKPKVKHRPALLPEQLPLLMKTLSFASIGRQTRCLI  240
            EVM++A N GL+  NP + I  +F KPK  + +AL P +LP LM +++ ASI R TRCL+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTMTRPAEAAESRWDEIDFDAKEWRIPAGRMKMKREHVIPLSEQALGILEVMKPIS  300
            EWQL TMTRPAEA+ +RWDEI+ + K W IPA RMK +REH IPL+EQ L++LEVMKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  KHRDYVFPGYRNPLEPMNSQTANMALKRMGFKDMLVAHGMRAIASTILNEKGFPPDVIEA  360
             HRD++FP+ R P  P NSQTANMALKRMGF + LV+HG+R++AST LNE+GF PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHIDTNEVRRAYNRAQYLEQRREMMAWWGEHVESASYGKTSIISV  407
            ALAH+D N+VR AYNR++YLE+R+ MM WW+EH+E A+ G  S+ + 
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGT  406

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  389 bits (1463),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 214/407 (53%), Positives = 304/407 (75%), Gaps = 1/407 (0%)

Query  1    MARQTKPLNNTEVKSAKATDRAVTLYDGDGLELQVTPSGSKLWRFRYYKPFTRKRAMISL  60
            MA++T  L + E+K++K+ ++   L+DGDGL L++ P+GSK W F YY+P   KRA +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPSVSLAEARKLREDARLLLSKDVDPQEHKQAEQSRQKNATENTFEKVAAEWFKTKES  120
            G YP +SL +ARK    A+ L+++++DPQ++++ +Q  +K+  E+TFE+V+ +WF  K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  AGLATHTLNDIWRSMSKYVFPHIGSMPIANITAQRFIGALEPTHAAGRLETVKRLSQRIN  180
               +  +L DIWRS+   +FPHI+  P+  ITA  +I  L P +A G LETVKRL+QR+N
Sbjct  121  DVTPDYAL-DIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDYALNSGLVSVNPAARIGRTFHKPKVKHRPALLPEQLPLLMKTLSFASIGRQTRCLI  240
            EVM++A N GL+  NP + I  +F KPK  + +AL P +LP LM +++ ASI R TRCL+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTMTRPAEAAESRWDEIDFHAKEWRIPAGRMKMKREHVIPLSEQALGILEVMKPIS  300
            EWQL TMTRPAEA+ +RWDEI+ + K W IPA RMK +REH IPL+EQ L++LEVMKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  KHRDYVFPGYRNPLEPMNSQTANMALKRMGFKDMLVAHGMRAIASTILNEKGFPPDVIEA  360
             HRD++FP+ R P  P NSQTANMALKRMGF + LV+HG+R++AST LNE+GF PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHIDTNEVRRAYNRAQYLEQRREMMAWWGEHVESASYGKTSIISV  407
            ALAH+D N+VR AYNR++YLE+R+ MM WW+EH+E A+ G  S+ + 
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGT  406

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  388 bits (1461),  Expect = 3e-109, Method: Compositional matrix adjust.
 Identities = 221/410 (54%), Positives = 307/410 (75%), Gaps = 0/410 (0%)

Query  1    MARKTKPLTDTEIKAAKPKDTDYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF  60
            MA++T  LTD EIKA+KP++ +Y+L+DGDGL L IK++GSK W F YYRP   +R++ SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKA  120
            G YP +SL +ARK    +K L+A++IDPQ+++K Q +  +E   +TF  V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYADDIWRSLERDVFPAIGDISVTEIKAHTLVKAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  ++  ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISLSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWDEIDFDANEWKIPAARMKMNRDHTVPLSDGALTILELMKSLSG  300
            WQL T+TRPAEA+ ARWDEI+ + + W IPA RMK  R+H +PL++  L++LE+MK++SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  GREFIFPSRIKPTQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA  360
             R+FIFPS   P +P NSQT N ALKR G++G LVSHGLRS+AST+LNE+GF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVSKADRGSIVETGKTGLK  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A RGS+  TG   LK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  388 bits (1458),  Expect = 4e-109, Method: Compositional matrix adjust.
 Identities = 220/410 (54%), Positives = 307/410 (75%), Gaps = 0/410 (0%)

Query  1    MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF  60
            MA++T  LTD EIKA+KP++ +Y+L+DGDGL L IK++GSK W F YYRP   +R++ SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPTVSLSDARKLRAESRVLLAKDIDPQEHQKEQVRNSQEAKTNTFFLVAERWWNVKKT  120
            G YP +SL +ARK    ++ L+A++IDPQ+++K Q +  +E   +TF  V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYADDIWRSLERDVFPAIGDISVTEIKAHTLVKAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  ++  ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISMSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWDEIDFDASEWKIPAARMKMNRDHTVPLSDGALTILEMMKSLSG  300
            WQL T+TRPAEA+ ARWDEI+ +   W IPA RMK  R+H +PL++  L++LE+MK++SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  GREFIFPSRIKPTQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA  360
             R+FIFPS   P +P NSQT N ALKR G++G LVSHGLRS+AST+LNE+GF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVSKADRGSIVETGKTRLK  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A RGS+  TG  +LK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  387 bits (1456),  Expect = 6e-109, Method: Compositional matrix adjust.
 Identities = 220/410 (54%), Positives = 306/410 (75%), Gaps = 0/410 (0%)

Query  1    MARQTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKLRTKQSF  60
            MA++T  LTD EIKA+KP++ +Y+L+DGDGL L IK++GSK W F YYRP    R++ SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPAVSLSDARKLRAESRSLLAKEIDPQEHQKEQVRNSHEAKTNTFLLVAERWWYLKKA  120
            G YP +SL +ARK    ++ L+A+ IDPQ+++K Q +   E   +TF  V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYAQDIWRSLERDVFPVIGDISVTEIKAHTLVKAIQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  ++  ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSINIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTANIILPTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  A+I   TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWDEINFDAKEWKIPAARMKMNREHTVPLSDEALTILEMMKPLSS  300
            WQL T+TRPAEA+ ARWDEIN + K W IPA RMK  REH +PL+++ L++LE+MKP+S+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREFIFPSRIKPTQSMNSQTVNAALKRAGLGGILVSHGLRSIASTALNEQGFSPDVIEAA  360
            +R+FIFPS   P ++ NSQT N ALKR G++G LVSHGLRS+AST+LNEQGF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVNKADSGSIITNGKRELK  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ ++ A  GS+   G ++LK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  387 bits (1455),  Expect = 8e-109, Method: Compositional matrix adjust.
 Identities = 219/410 (54%), Positives = 307/410 (75%), Gaps = 0/410 (0%)

Query  1    MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF  60
            MA++T  LTD EIKA+KP++ +Y+L+DGDGL L IK++GSK W F YYRP   +R++ SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPAVSLSDARKLRAESRVLLAKDIDPQQHQKEQVRNSQEAKTNTFLLVAERWWNVKKA  120
            G YP +SL +ARK    ++ L+A++IDPQ+++K Q +  +E   +TF  V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYAYDIWRSLERDVFPAIGDISVTEIKAHTLVKAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  ++  ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISVSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWDEIDFVASEWKIPAARMKMNRDHTVPLSNEALSILEMMKSLSG  300
            WQL T+TRPAEA+ ARWDEI+     W IPA RMK  R+H +PL+++ L++LE+MK++SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  GREFIFPSRIKPTQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA  360
             R+FIFPS   P +P NSQT N ALKR G++G LVSHGLRS+AST+LNE+GF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWAEFVNKADSGSIVDNGKRELK  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW+E ++ A  GS+   G ++LK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  386 bits (1452),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 223/412 (55%), Positives = 314/412 (77%), Gaps = 2/412 (0%)

Query  1    MARITTPLTNTEIKAAKPAEKEYTLQDGDGLYLLVKPSGSKIWRFNYYRPDTKKRALISF  60
            MA+ T  LT+ EIKA+KP EKEY L DGDGL L +KP+GSK W FNYYRP   KRA +SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPAVSLAEARQRRESAKALISKGIDPQFHqqqqreqeqAISLNTFAKVAADWYEVKKS  120
            G +P +SL +AR+   SAK LI++GIDPQ ++++Q++ ++ I  +TF +V+ DW+ +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  QQLAANTIKDIWRSLEKYVFPFIANQPISQLTARHFITALEPIQASGKLETVKRVSQRIN  180
            + ++++   DIWRSLE  +FP I+++P+  +TA ++I  L PI+A G LETVKR++QR+N
Sbjct  121  D-VTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPGLMKTLSVASIELQTRLLI  240
            EVM++A N GLI ANP + I+ AF+ P K +M+++ P  LP LM +++ ASI   TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTVSRPAEAAETRWSEIDLMQNTWTIPAGRMKMRREHVIPLPPQALAILDAMKPIS  300
            EWQL T++RPAEA+ +RW EI+  ++ WTIPA RMK RREH IPL  Q LA+L+ MKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  GHREYLFPSAKDPKQPMNSQTANAALRRMGYKGVLVSHGLRAIFSTAANEAGFPPDVIEA  360
            GHR+++FPS + PK+P NSQTAN AL+RMG+ G LVSHGLR++ ST+ NE GF PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHVDTNEVRRAYNRSTYLEQRKVLMCWWGEFVETAATGKAMASEGARVLR  412
            ALAHVD N+VR AYNR+ YLE+RK +MCWW+E +E AA G +++  G++ L+
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARG-SLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  386 bits (1452),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 224/412 (55%), Positives = 315/412 (77%), Gaps = 2/412 (0%)

Query  1    MARITTPLTNTEIKAAKPAEKEYTLQDGDGLYLLVKPSGSKIWRFNYYRPDTKKRALISF  60
            MA+ T  LT+ EIKA+KP EKEY L DGDGL L +KP+GSK W FNYYRP   KRA +SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPAVSLAEARQRRESAKALISKGIDPqfhqqqqreqeqainqNTFAKVAADWYEVKKS  120
            G +P +SL +AR+   SAK LI++GIDPQ ++++Q++ ++ I+++TF +V+ DW+ +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  QPLAANTIKDIWRSLEKYVFPFIANQPISQLTARHFITALEPIQASGKLETVKRVSQRIN  180
            +  +  ++ DIWRSLE  +FP I+++P+  +TA ++I  L PI+A G LETVKR++QR+N
Sbjct  121  DVTPDYAL-DIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPGLMKTLSVASIELQTRLLI  240
            EVM++A N GLI ANP + I+ AF+ P K +M+++ P  LP LM +++ ASI   TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTVARPAEAAETRWSELDLTENTWTIPAGRMKMRREHVIPLPSQALAILDAMKPIS  300
            EWQL T++RPAEA+ +RW E++  E+ WTIPA RMK RREH IPL  Q LA+L+ MKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  GHREYLFPSAKDPKQPMNSQTANAALRRMGYKGVLVSHGLRAIFSTAANEAGFPPDVIEA  360
            GHR+++FPS + PK+P NSQTAN AL+RMG+ G LVSHGLR++ ST+ NE GF PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHVDTNEVRRAYNRSTYLEQRKVLMCWWGEFVETAATGKALASDGARGLR  412
            ALAHVD N+VR AYNR+ YLE+RK +MCWW+E +E AA G +L+  G++ L+
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARG-SLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  386 bits (1451),  Expect = 2e-108, Method: Compositional matrix adjust.
 Identities = 221/410 (54%), Positives = 308/410 (76%), Gaps = 0/410 (0%)

Query  1    MARKTKPLTDTEIKAAKSKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF  60
            MA++T  LTD EIKA+K+++ +Y+L+DGDGL L IK++GSK W F YYRP   +R++ SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPAVSLSDARKLRAESKVLLAKGIDPQEYQKEQIRNSQEAKTNTFLLVAERWWNVKKA  120
            G YP +SL +ARK    +K L+A+GIDPQ+ +K Q +  +E   +TF  V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYADDIWRSLERDIFPAIGNVSVTDIKAHTLVQAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE +IFP I++ +V  I A  +++ ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISLSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWNEIDFDANEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG  300
            WQL T+TRPAEA+ ARW+EI+ + + W IPA RMK  R+H +PL++  LA+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  GRDFIFPSRIKPTQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEQGFPPDVIEAA  360
             RDFIFPS   P +P NSQT N ALKR G++G LVSHGLRS+AST+LNEQGF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVKRADKGSMVESSAGALK  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A +GS+  +++  LK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  385 bits (1447),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 219/404 (55%), Positives = 304/404 (76%), Gaps = 0/404 (0%)

Query  1    MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF  60
            MA++T  LTD EIKA+KP++ +Y+L+DGDGL L IK++GSK W F YYRP   +R++ SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT  120
            G YP +SL +ARK    +K L+A++IDPQ+++K Q +  +E   +TF  V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE +IFP I+D ++  I A  ++  ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG  300
            WQL T+TRPAEA+ ARWDEI+ +   W IPA RMK  R+H +PL++  LA+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA  360
             R+FIFPS   P++P NSQT N ALKR G++G LVSHGLRS+AST+LNE+GF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT  404
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A  GS+ +T
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVT  404

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  385 bits (1447),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 219/404 (55%), Positives = 304/404 (76%), Gaps = 0/404 (0%)

Query  1    MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF  60
            MA++T  LTD EIKA+KP++ +Y+L+DGDGL L IK++GSK W F YYRP   +R++ SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT  120
            G YP +SL +ARK    +K L+A++IDPQ+++K Q +  +E   +TF  V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE +IFP I+D ++  I A  ++  ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG  300
            WQL T+TRPAEA+ ARWDEI+ +   W IPA RMK  R+H +PL++  LA+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA  360
             R+FIFPS   P++P NSQT N ALKR G++G LVSHGLRS+AST+LNE+GF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT  404
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A  GS+ +T
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVT  404

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  385 bits (1447),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 219/404 (55%), Positives = 304/404 (76%), Gaps = 0/404 (0%)

Query  1    MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF  60
            MA++T  LTD EIKA+KP++ +Y+L+DGDGL L IK++GSK W F YYRP   +R++ SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT  120
            G YP +SL +ARK    +K L+A++IDPQ+++K Q +  +E   +TF  V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE +IFP I+D ++  I A  ++  ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG  300
            WQL T+TRPAEA+ ARWDEI+ +   W IPA RMK  R+H +PL++  LA+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA  360
             R+FIFPS   P++P NSQT N ALKR G++G LVSHGLRS+AST+LNE+GF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT  404
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A  GS+ +T
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVT  404

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  385 bits (1447),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 219/404 (55%), Positives = 304/404 (76%), Gaps = 0/404 (0%)

Query  1    MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF  60
            MA++T  LTD EIKA+KP++ +Y+L+DGDGL L IK++GSK W F YYRP   +R++ SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT  120
            G YP +SL +ARK    +K L+A++IDPQ+++K Q +  +E   +TF  V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE +IFP I+D ++  I A  ++  ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG  300
            WQL T+TRPAEA+ ARWDEI+ +   W IPA RMK  R+H +PL++  LA+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA  360
             R+FIFPS   P++P NSQT N ALKR G++G LVSHGLRS+AST+LNE+GF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT  404
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A  GS+ +T
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVT  404

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  385 bits (1447),  Expect = 3e-108, Method: Compositional matrix adjust.
 Identities = 219/404 (55%), Positives = 304/404 (76%), Gaps = 0/404 (0%)

Query  1    MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF  60
            MA++T  LTD EIKA+KP++ +Y+L+DGDGL L IK++GSK W F YYRP   +R++ SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT  120
            G YP +SL +ARK    +K L+A++IDPQ+++K Q +  +E   +TF  V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE +IFP I+D ++  I A  ++  ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG  300
            WQL T+TRPAEA+ ARWDEI+ +   W IPA RMK  R+H +PL++  LA+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA  360
             R+FIFPS   P++P NSQT N ALKR G++G LVSHGLRS+AST+LNE+GF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGSIVLT  404
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A  GS+ +T
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVT  404

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  384 bits (1442),  Expect = 8e-108, Method: Compositional matrix adjust.
 Identities = 226/410 (56%), Positives = 321/410 (79%), Gaps = 0/410 (0%)

Query  1    MANSTKQLTATQVSNAKPKEKEYNLADGRGLSLRVKTGGSKFWLLNYTRPVTQKRANLGL  60
            MA++T +LT  ++  +KP+EKEYNL DG GL LR+K  GSK W++NY RP   KRANL++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GTYPDVPlaearkrreaarellaQGIDPqhhqqqqKAAIKTDAENTLKSVTNAWFEIKKQ  120
            G YPD++L +ARK   +A+EL+AQGIDPQ+++++Q+   K   E+T+ +VT+ WF IK++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  KVSENHGQKLYRRLELYLFPALGGTPISVLTAPQVIQVLKPAEAKGNIETCKRVISWLNE  180
             V+ + +  + R LEL +FP +++ P+  +TAP++I++LKP EAKG++ET KR+  +LNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMTFAVNTGLIHSNPLIGIAAAFGVPEKRQMPTLKPAELPEFIEALTYSSIKKTTRCLIE  240
            VM FA N GLI++NPL GI AAF  P K +M++L PAELPE++ A++ +SIK+TTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  IQLHTMTRPAEAAKAKWTEIDFDKQLWTIPAERMKMKREHIIPLTPQVISLLNRMHEISG  300
             QLHTMTRPAEA+ A+W EI+ + ++WTIPAERMK +REH IPLT Q+++LL+ M  ISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  DLEYIFPADRNKHHHTNTETANMAIKRMGYKGRLVAHGLRALASTTLNEQGFDAELIEVS  360
            + ++IFP+DR      N++TANMA+KRMG+ GRLV+HGLR+LASTTLNEQGFD++L+E +
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNTVRAAYNRADYIERRRELMCWWSEHVQITPNQLNSVITQQLLK  410
            LAHVD N VR+AYNR+DY+ERR+ +MCWWSEH++ ++    SV   + LK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  382 bits (1438),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 217/410 (53%), Positives = 306/410 (75%), Gaps = 0/410 (0%)

Query  1    MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKASGSKLWQFRYYRPLTKQRTKQSF  60
            MA++T  LTD EIKA+KP++ +Y+L+DGDGL L IK++GSK W F YYRP   +R++ SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPAVSLSDARKLRAESRVLLAKDIDPQEHQKEQMRNSQEAKTNTFLLVAERWWNVKKA  120
            G YP +SL +ARK    ++ L+A++IDPQ+++K Q +  +E   +TF  V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYADDIWRSLERDVFPAIGDISVTEIKAHTLVKAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  ++  ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISLSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWDEIDFDVNEWKIPAARMKMNRDHTVPLSNEALSILEMMKSLSG  300
            WQL T+TRPAEA+ ARWDEI+ + + W IPA RMK  R+H +PL+++ L++LE+MK++SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  GREFIFPSRIKPTQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFLPDAIEAA  360
             R+FIFPS   P +P NSQT N ALKR G++G LVSHGLRS+AST+LNE+GF PD +E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVSKADSGCIVENGKRELK  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A  G +   G ++LK
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  382 bits (1437),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 213/412 (52%), Positives = 311/412 (76%), Gaps = 1/412 (0%)

Query  1    MARKTPPLTTVQIKAARPAEKEYTLQDGGGLFLLVKPSGSKLWRFSYYRPSDKKRILLSF  60
            MA++T  LT  +IKA++P EKEY L DG+GL L +KP+GSK W F+YYRP++ KR  LSF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSLDDVSLADARKRRSEYRALISAGTDPQGHEKKKREAEARRQGNTFENVAAAWYQVKIS  120
            G   D+SL +ARK     + LI+ G DPQ++ K++++ +   + +TFENV+  W+ +K  
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIK-Q  119

Query  121  QNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVLTPIKERGNLETLKRVLQRVN  180
            ++++P+   DIWRSL+  +FP I++ P+ ++TA  ++E+L PI  +G+LET+KR+ QR+N
Sbjct  120  NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQALSVSATERQTRLLI  240
            EVM++A+N GLI+ANP   ++ AF  P K +M+++ P +LPELM A++ ++  R TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGRMKMRRDHVIPLSGQAMAVLEAMKPIS  300
            EWQL T+TRPAEAS++RWDEIN + K WTIPA RMK RR+H IPL+ Q +A+LE MKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  HHRNYVFPSLKDPQQPMNSQTANAALRRMGFAGVLVSHGLRAIFSTAANEEGFEPDVIEA  360
             HR+++FPS + P++P NSQTAN AL+RMGFAG LVSHGLR++ ST+ NE+GF+PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHVDTNEVRRAYNRSNYIEKRIVLMRWWGEFVEAAATGVTLASGKRGIRA  412
            ALAHVD N+VR AYNR++Y+E+R  +M WW+E +E AA G    +G + ++ 
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKN  411

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  382 bits (1435),  Expect = 3e-107, Method: Compositional matrix adjust.
 Identities = 213/398 (54%), Positives = 300/398 (76%), Gaps = 0/398 (0%)

Query  1    MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF  60
            MA++T  LTD EIKA+KP++ +Y+L+DGDGL L IK++GSK W F YYRP   +R++ SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQDAKTNTFLLVAERWWNVKKA  120
            G YP +SL +ARK    +K L+A++IDPQ+++K Q +  ++   +TF  V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYADDIWRSLERDVFPAIGDISVTEIKAHTLVKAVQPVQARGALETVRRLFQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  ++  ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISVSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSNEALSILEMMKSLNG  300
            WQL T+TRPAEA+ ARWDEI+ +   W IPA RMK  R+H +PL+++ L++LE+MK+++G
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  GREFIFPSRIKPTKPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAA  360
             R+FIFPS   P KP NSQT N ALKR G++G LVSHGLRS+AST+LNE+GF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVKSAEK  398
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A +
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAAR  398

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  381 bits (1433),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 212/412 (52%), Positives = 311/412 (76%), Gaps = 1/412 (0%)

Query  1    MARKTHPLTTVQIKAARPAQKEYTLQDGGGLFLLVKPSGSKLWRFSYYRPSDKKRILLSF  60
            MA++T  LT  +IKA++P +KEY L DG+GL L +KP+GSK W F+YYRP++ KR  LSF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSLEDVSLADARKRRSEYRTLISAGTDPQDHERQKRETEARRQGNTFENVAAAWYQVKIS  120
            G   D+SL +ARK     + LI+ G DPQD+ +++++ +   + +TFENV+  W+ +K  
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIK-Q  119

Query  121  QNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVLTPIKERGNLETLKRVLQRVN  180
            ++++P+   DIWRSL+  +FP I++ P+ ++TA  ++E+L PI  +G+LET+KR+ QR+N
Sbjct  120  NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQALSVSATERQTRLLI  240
            EVM++A+N GLI+ANP   ++ AF  P K +M+++ P +LPELM A++ ++  R TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGRMKMRRDHVIPLSGQAMAVLEAMKPIS  300
            EWQL T+TRPAEAS++RWDEIN + K WTIPA RMK RR+H IPL+ Q +A+LE MKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  HHRNYVFPSLKDPQQPMNSQTANAALRRMGFAGVLVSHGLRAIFSTAANEEGFEPDVIEA  360
             HR+++FPS + P++P NSQTAN AL+RMGFAG LVSHGLR++ ST+ NE+GF+PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHVDTNEVRRAYNRSNYIEKRIVLMRWWGEFVEAAATGVTLASGKRGIRA  412
            ALAHVD N+VR AYNR++Y+E+R  +M WW+E +E AA G    +G + ++ 
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKN  411

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  381 bits (1432),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 212/405 (53%), Positives = 308/405 (77%), Gaps = 4/405 (0%)

Query  1    MPRPVTPLNDSQIKKAKPKEKDCVFSDGGGLQLRIRASSGSKLWNFNYLHPVTKKRMNMG  60
            M++    L D +IK +KP+EK+  + DG+GL+LRI+++ GSK W FNY +P   KR N++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPN-GSKQWIFNYYRPTNGKRANLS  59

Query  61   LGMYPEVSLKKARSLAEEARAKVAEGIDPKLSRDESIRTQRTEQESTLRKVAEDWFETKK  120
            +GMYP++SL +AR     A+  +A+GIDP+  R    + ++  +E T+ +V+ DWF  K+
Sbjct  60   FGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ  119

Query  121  TKVTDDYADDIWRSLELHVFPDLGKKPINEITAPMFIQVLKPIEKSGRLETVKRVIQRVN  180
              VT DYA DIWRSLELH+FP+++ KP++ ITAP +I++LKPIE  G LETVKR+ QR+N
Sbjct  120  NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EIMVFATNTGVIQANPLAGVKAAFQSPKKQHLPTIGKDELPVFLDKLQNTSVSKVTRHLI  240
            E+M FATN G+IQANPL+G+KAAF+ PKK++++++   ELP ++  + N+S+ + TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  KWQLLTMVRPSEAAGARWEEIERLDNGEVNWIIPAERMKKRRQHIVPLPTQAIKVLDKMK  300
             WQL TM RP+EA+GARW+EI++    E  W IPAERMKKRR+H +PL  Q + +L+ MK
Sbjct  240  EWQLHTMTRPAEASGARWDEINW---EEKVWTIPAERMKKRREHRIPLTEQMLALLEVMK  296

Query  301  EISGNREHIFISMKNPNTHVNSQTANMAIRRMDYKDKLVSHGLRALASTILNEEGKDPDL  360
             ISG+R+ IF S + P+   NSQTANMA++RM++ ++LVSHGLR+LAST LNE+G DPDL
Sbjct  297  PISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDL  356

Query  361  IESALAHTDPNQIRSAYNRSQYLERRRELMQWWGDYLDNAVRAGI  405
            +ESALAH D NQ+RSAYNR++YLERR+ +M WW++ +++A R+++
Sbjct  357  VESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  381 bits (1432),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 212/405 (53%), Positives = 308/405 (77%), Gaps = 4/405 (0%)

Query  1    MPRPVTPLNDSQIKKAKPKEKDCVFSDGGGLQLRIRASSGSKLWNFNYLHPVTKKRMNMG  60
            M++    L D +IK +KP+EK+  + DG+GL+LRI+++ GSK W FNY +P   KR N++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPN-GSKQWIFNYYRPTNGKRANLS  59

Query  61   LGMYPEVSLKKARSLAEEARAKVAEGIDPKLSRDESIRTQRTEQESTLRKVAEDWFETKK  120
            +GMYP++SL +AR     A+  +A+GIDP+  R    + ++  +E T+ +V+ DWF  K+
Sbjct  60   FGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ  119

Query  121  TKVTDDYADDIWRSLELHVFPDLGKKPINEITAPMFIQVLKPIEKSGRLETVKRVIQRVN  180
              VT DYA DIWRSLELH+FP+++ KP++ ITAP +I++LKPIE  G LETVKR+ QR+N
Sbjct  120  NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EIMVFATNTGVIQANPLAGVKAAFQSPKKQHLPTIGKDELPVFLDKLQNTSVSKVTRHLI  240
            E+M FATN G+IQANPL+G+KAAF+ PKK++++++   ELP ++  + N+S+ + TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  KWQLLTMVRPSEAAGARWEEIERLDNGEVNWIIPAERMKKRRQHIVPLPTQAIKVLDKMK  300
             WQL TM RP+EA+GARW+EI++    E  W IPAERMKKRR+H +PL  Q + +L+ MK
Sbjct  240  EWQLHTMTRPAEASGARWDEINW---EEKVWTIPAERMKKRREHRIPLTEQMLALLEVMK  296

Query  301  EISGNREHIFISMKNPNTHVNSQTANMAIRRMDYKDKLVSHGLRALASTILNEEGKDPDL  360
             ISG+R+ IF S + P+   NSQTANMA++RM++ ++LVSHGLR+LAST LNE+G DPDL
Sbjct  297  PISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDL  356

Query  361  IESALAHTDPNQIRSAYNRSQYLERRRELMQWWGDYLDNAVRAGI  405
            +ESALAH D NQ+RSAYNR++YLERR+ +M WW++ +++A R+++
Sbjct  357  VESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  380 bits (1428),  Expect = 1e-106, Method: Compositional matrix adjust.
 Identities = 212/412 (52%), Positives = 311/412 (76%), Gaps = 1/412 (0%)

Query  7    MARKTHPLTTVQIKAARPAQKEYTLQDGGGLFLLVKPSGSKLWRFSYYRPSDKKRILLSF  66
            MA++T  LT  +IKA++P +KEY L DG+GL L +KP+GSK W F+YYRP++ KR  LSF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  67   GSLEDVSLADARKRRSEYRTLISAGTDPQDHERQKRETEARRQGNTFENVAAAWYQVKIS  126
            G   D+SL +ARK     + LI+ G DPQD+ +++++ +   + +TFENV+  W+ +K  
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIK-Q  119

Query  127  QNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVLTPIKERGNLETLKRVLQRVN  186
            ++++P+   DIWRSL+  +FP I++ P+ ++TA  ++E+L PI  +G+LET+KR+ QR+N
Sbjct  120  NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  187  EVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQALSVSATERQTRLLI  246
            EVM++A+N GLI+ANP   ++ AF  P K +M+++ P +LPELM A++ ++  R TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  247  EWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGRMKMRRDHVIPLSGQAMAVLEAMKPIS  306
            EWQL T+TRPAEAS++RWDEIN + K WTIPA RMK RR+H IPL+ Q +A+LE MKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  307  HHRNYVFPSLKDPQQPMNSQTANAALRRMGFAGVLVSHGLRAIFSTAANEEGFEPDVIEA  366
             HR+++FPS + P++P NSQTAN AL+RMGFAG LVSHGLR++ ST+ NE+GF+PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  367  ALAHVDTNEVRRAYNRSNYIEKRIVLMRWWGEFVEAAATGVTLASGKRGIRA  418
            ALAHVD N+VR AYNR++Y+E+R  +M WW+E +E AA G    +G + ++ 
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKN  411

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  380 bits (1429),  Expect = 9e-107, Method: Compositional matrix adjust.
 Identities = 204/411 (50%), Positives = 314/411 (77%), Gaps = 1/411 (0%)

Query  1    MARITTPLTNTEIRAAKPEVKEYTLQDGNGLYLLVKPSGSKIWRFSYYRPHDKKRALVSF  60
            MA+ T  LT+ EI+A+KP  KEY L DG+GL L +KP+GSK W F+YYRP + KRA +SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSINEVTLAEARKKRDEFRALIAQGIDPQAHQQQKREAEELRRGNTFQKVAADWYEMKKG  120
            G   +++L +ARK     + LIAQGIDPQ +++++++ +   + +TF++V+ DW+ +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  QNLAANTIKDIWRSLEKYVLPDIGNTPINELTARKFVTVLEPIKARGNLETLKRVLQRIN  180
             +++++   DIWRSLE  ++P+I++ P++ +TA  ++ +L PI A+G+LET+KR+ QR+N
Sbjct  121  -DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDFAANSGLIEINTAANVRKAFPTPVKKHMPTIRPEQLPDLMQTLSIARIERQTRLLI  240
            EVM+FA+N GLI+ N  + ++ AF  P K +M+++ P +LP+LM +++ A I R TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTVTRPAEAAEAKWEEINLTDNTWTIPAGRMKMRRDHVIPLSNQALAVLDAMRPIS  300
            EWQL T+TRPAEA+ A+W+EIN  ++ WTIPA RMK RR+H IPL++Q LA+L+ M+PIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  AHREYVFPSFKTPTLPMSSQSANAALRRMGYQGVLVSHGLRAIFSTAANEEGFEPDVIEA  360
            +HR+++FPS ++P  P +SQ+AN AL+RMG+ G LVSHGLR++ ST+ NE+GF+PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHIDTNEVRRAYNRSNYLEKRIVLMCWWGEFVETASTGITLATGTRGIR  411
            ALAH+D N+VR AYNR++YLE+R  +MCWW+E +E A+ G    TGT+ ++
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  379 bits (1424),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 212/410 (52%), Positives = 306/410 (75%), Gaps = 0/410 (0%)

Query  1    MARQTKPLSVKEIESAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYIRPVTKKRAKKSI  60
            MA++T  L+ KEI ++KP+E +Y L+DGDGL L IK++GSK W F Y RP   KRA+ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPSVTLADARNYRAESRSLLAKQIDPQEHQQEQLRSSLEAKTNTFQLVAERWWNVKKA  120
            G YP ++L +AR+    ++ L+A+ IDPQ++++ Q +   E   +TF+ V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAHTLVQAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  +++ ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISLSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEALWEEVDIEAREWKIPAARMKMNRDHTVPLSDEAIAILEMMKPLSG  300
            WQL T+TRPAEA+ A W+E++ E + W IPA RMK  R+H +PL+++ +A+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREFIFPSRIKPNQPMNSQTVNASLKRAGFGGVLVSHGLRSIASTALNEQGFPPDVIEAA  360
            +R+FIFPS   P++P NSQT N +LKR GF+G LVSHGLRS+AST+LNEQGF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVMAADHGSMIEGGIKAMR  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A +GS+   G K ++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  379 bits (1424),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 212/410 (52%), Positives = 306/410 (75%), Gaps = 0/410 (0%)

Query  1    MARQTKPLSVKEIESAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYIRPVTKKRAKKSI  60
            MA++T  L+ KEI ++KP+E +Y L+DGDGL L IK++GSK W F Y RP   KRA+ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPSVTLADARNYRAESRSLLAKQIDPQEHQQEQLRSSLEAKTNTFQLVAERWWNVKKA  120
            G YP ++L +AR+    ++ L+A+ IDPQ++++ Q +   E   +TF+ V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAHTLVQAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  +++ ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISLSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEALWEEVDIEAREWKIPAARMKMNRDHTVPLSDEAIAILEMMKPLSG  300
            WQL T+TRPAEA+ A W+E++ E + W IPA RMK  R+H +PL+++ +A+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREFIFPSRIKPNQPMNSQTVNASLKRAGFGGVLVSHGLRSIASTALNEQGFPPDVIEAA  360
            +R+FIFPS   P++P NSQT N +LKR GF+G LVSHGLRS+AST+LNEQGF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVMAADHGSMIEGGIKAMR  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A +GS+   G K ++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  379 bits (1424),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 212/410 (52%), Positives = 306/410 (75%), Gaps = 0/410 (0%)

Query  1    MARQTKPLSVKEIESAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYIRPVTKKRAKKSI  60
            MA++T  L+ KEI ++KP+E +Y L+DGDGL L IK++GSK W F Y RP   KRA+ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPSVTLADARNYRAESRSLLAKQIDPQEHQQEQLRSSLEAKTNTFQLVAERWWNVKKA  120
            G YP ++L +AR+    ++ L+A+ IDPQ++++ Q +   E   +TF+ V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAHTLVQAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  +++ ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISLSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEALWEEVDIEAREWKIPAARMKMNRDHTVPLSDEAIAILEMMKPLSG  300
            WQL T+TRPAEA+ A W+E++ E + W IPA RMK  R+H +PL+++ +A+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREFIFPSRIKPNQPMNSQTVNASLKRAGFGGVLVSHGLRSIASTALNEQGFPPDVIEAA  360
            +R+FIFPS   P++P NSQT N +LKR GF+G LVSHGLRS+AST+LNEQGF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVMAADHGSMIEGGIKAMR  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A +GS+   G K ++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  379 bits (1424),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 212/410 (52%), Positives = 306/410 (75%), Gaps = 0/410 (0%)

Query  1    MARQTKPLSVKEIESAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYIRPVTKKRAKKSI  60
            MA++T  L+ KEI ++KP+E +Y L+DGDGL L IK++GSK W F Y RP   KRA+ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPSVTLADARNYRAESRSLLAKQIDPQEHQQEQLRSSLEAKTNTFQLVAERWWNVKKA  120
            G YP ++L +AR+    ++ L+A+ IDPQ++++ Q +   E   +TF+ V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAHTLVQAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  +++ ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISLSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEALWEEVDIEAREWKIPAARMKMNRDHTVPLSDEAIAILEMMKPLSG  300
            WQL T+TRPAEA+ A W+E++ E + W IPA RMK  R+H +PL+++ +A+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREFIFPSRIKPNQPMNSQTVNASLKRAGFGGVLVSHGLRSIASTALNEQGFPPDVIEAA  360
            +R+FIFPS   P++P NSQT N +LKR GF+G LVSHGLRS+AST+LNEQGF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVMAADHGSMIEGGIKAMR  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A +GS+   G K ++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  379 bits (1424),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 203/409 (50%), Positives = 307/409 (76%), Gaps = 0/409 (0%)

Query  1    MAKKIRPLSATQVKNLKSQAKEFSIGDGDGLLLRIMPNGTKSWLFNYIHPSTKKRKNIGL  60
            MAK+   L+  ++K  K++ KE+++ DGDGL LRI PNG+K W+FNY +P+  KR N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GKYPDVSLATAREQRQTMRELVAKGIDPKTHRDNQQTAEKLAAQDTLLHVAKEWFELKQH  120
            G YPD+SL  AR    + +EL+A+GIDP+ +R  QQ  +K   ++T+ +V+K+WF +KQ+
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVSSDYADDIWRSLELHIFPNLGQLPLREILAPTVIAQLRPLEAKGSLETVKRVCQRLNE  180
             V++DYA DIWRSLELHIFP++++ P++ I AP +I  L+P+EAKGSLETVKR+ QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMTYAVNCGKVEANPIANIKQVFKKPKVKHMKTITPQDLSFLLESMSKVNIKLVTRCAFE  240
            VM +A NCG ++ANP++ IK  FKKPK  +M ++TP +L+ L+ ++++ +IK  TRC +E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  FQLHTLTRPSECVKAEWNEIDFAQKLWTIPKDKMKMKRDHKIPLSDPVIKLLQFMKPISF  300
             QLHT+TRP+E   A W+EI+  +K+WTIP ++MK +R+H+IPL++ ++ LL+ MKPIS 
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  EHKYVFPSDAKAGSHMNSQSVNAAIKRAGFSGKLVSHGMRSIGSTALNEQGFNKDAIELC  360
            ++ ++FPSD  +    NSQ+ N A+KR GF+G+LVSHG+RS++ST+LNEQGF+ D +E  
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNTIRDIYNNAEYLEERRNVMQWWSEYIISASKNTFILAKNPNL  409
            LAHVD N +R  YN ++YLE R+ +M WWSE I  A++ ++ ++   +L
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQL  409

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  379 bits (1424),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 203/409 (50%), Positives = 307/409 (76%), Gaps = 0/409 (0%)

Query  1    MAKKIRPLSATQVKNLKSQAKEFSIGDGDGLLLRIMPNGTKSWLFNYIHPSTKKRKNIGL  60
            MAK+   L+  ++K  K++ KE+++ DGDGL LRI PNG+K W+FNY +P+  KR N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GKYPDVSLATAREQRQTMRELVAKGIDPKTHRDNQQTAEKLAAQDTLLHVAKEWFELKQH  120
            G YPD+SL  AR    + +EL+A+GIDP+ +R  QQ  +K   ++T+ +V+K+WF +KQ+
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVSSDYADDIWRSLELHIFPNLGQLPLREILAPTVIAQLRPLEAKGSLETVKRVCQRLNE  180
             V++DYA DIWRSLELHIFP++++ P++ I AP +I  L+P+EAKGSLETVKR+ QRLNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMTYAVNCGKVEANPIANIKQVFKKPKVKHMKTITPQDLSFLLESMSKVNIKLVTRCAFE  240
            VM +A NCG ++ANP++ IK  FKKPK  +M ++TP +L+ L+ ++++ +IK  TRC +E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  FQLHTLTRPSECVKAEWNEIDFAQKLWTIPKDKMKMKRDHKIPLSDPVIKLLQFMKPISF  300
             QLHT+TRP+E   A W+EI+  +K+WTIP ++MK +R+H+IPL++ ++ LL+ MKPIS 
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  EHKYVFPSDAKAGSHMNSQSVNAAIKRAGFSGKLVSHGMRSIGSTALNEQGFNKDAIELC  360
            ++ ++FPSD  +    NSQ+ N A+KR GF+G+LVSHG+RS++ST+LNEQGF+ D +E  
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNTIRDIYNNAEYLEERRNVMQWWSEYIISASKNTFILAKNPNL  409
            LAHVD N +R  YN ++YLE R+ +M WWSE I  A++ ++ ++   +L
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQL  409

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  378 bits (1421),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 214/398 (54%), Positives = 302/398 (76%), Gaps = 4/398 (1%)

Query  1    MARITRPLTNNEILKAKPREKDFTLHDGDGLFLLVKTSGKKLWRFRYQRPVSGSRTNLSL  60
            MA+ T  LT++EI  +KPREK++ L DGDGL L +K +G K W F Y RP +G R+NLS+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPALTLAAVRQ--IRDQHLTTIAQGIDPqqqqeqASEKRQIELDSIFSTVAANWFKMK  118
            G YP ++L   R+  +  ++L  IAQGIDPQ+++ +  + ++   +  F  V+ +WF +K
Sbjct  61   GMYPDISLLQARKSLLSAKEL--IAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIK  118

Query  119  SKSVTEDYAKDIWRSLEKDVFPAIGAIPVQELKARTIVEALEPIKARGALETVRRLIQRV  178
             + VT DYA DIWRSLE ++FP I+  PV+ + A  I+E L PI A+G+LETV+RL QR+
Sbjct  119  QNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  179  NEIMIYAVNTGLIDANPASGVGMAFERPKKQNMPTLRPEELPNLMRSLVMSNLSIPTRCL  238
            NE+M +A N GLI+ANP +G+  AF +PKK+NM++L P ELP+LM ++  +++   TRCL
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  239  IEWQLLTLVRPSEASGTRWAEIDLEAKLWTIPAERMKAKREHIVPLSSQALDILEVMKPI  298
            +EWQL T+ RP+EASG+RW EI+ E K+WTIPAERMK +REH +PL+ Q L +LEVMKPI
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  299  SAHREHIFPSRNDPKQPMNSQTANAALKRIGYAGKLVAHGMRSIASTAMNETGFNSDVIE  358
            S+HR+ IFPS   PK+P NSQTAN ALKR+G+AG+LV+HG+RS+AST++NE GF++D++E
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  359  SALAHIEKNEVRRAYNRALYLEQRKELMQWWGNFINKA  396
            SALAH++ N+VR AYNR+ YLE+RK +M WW++ I+ A
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEA  396

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  378 bits (1421),  Expect = 4e-106, Method: Compositional matrix adjust.
 Identities = 211/410 (52%), Positives = 303/410 (74%), Gaps = 0/410 (0%)

Query  1    MARQTKPLSVKEIESAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYIRPVTKKRAKKSI  60
            MA++T  L+ KEI ++KP+E +Y L+DGDGL L IK++GSK W F Y RP   KRA+ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPSVTLADARSYRTESRSLLAKQIDPQEHQQEQLRSSLEAKTNSFQLVAERWWNVKKA  120
            G YP ++L +AR     ++ L+A+ IDPQ++++ Q +   E   ++F+ V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYAEDIWRSLERDVFPAIGDISVTEIKAHTLVKAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  ++  ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISLSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDEAIAILEMMKPLSG  300
            WQL T+TRPAEA+ ARWDEI+ +   W IPA RMK  R+H +PL+++ +A+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  SREFIFPSHIKTNQPMNSQTVNASLKRAGFGGVLVSHGLRSIASTALNEQGFPPDVIEAA  360
             R+FIFPS+   ++P NSQT N +LKR GF+G LVSHGLRS+AST+LNEQGF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVMAAEHGSMIGNGIRGIR  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A +GS+   G + ++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  378 bits (1420),  Expect = 5e-106, Method: Compositional matrix adjust.
 Identities = 214/412 (52%), Positives = 312/412 (76%), Gaps = 2/412 (0%)

Query  1    MAIQTKRLTNTEVKAAKAIDKELSLHDGGGLLLFVKPSGTKTWRFRYYQPQTKKRTTLTF  60
            MA +T +LT+ E+KA+K+ +KE +L DG+GL L +KP+G+K W F YY+P   KR+ L+F
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPAISLADARQMREAAKALLEKSIDPQFHqqqqreqeqAINLNTFAKVSADWYELKKS  120
            G YP ISL +AR+   +AK L+ ++IDPQ ++++Q++ ++ I+ +TF +V+ DW+ +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  QPLAENTIKDIWRSLEKYVFPFIGTLPITQLTARHFITALEPIQASGKLETVKRVSQRIN  180
            +  ++ ++ DIWRSLE  +FP I+  P+  +TA ++I  L PI+A G LETVKR++QR+N
Sbjct  121  DVTPDYAL-DIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPGLMKTLSVASIELQTRLLI  240
            EVM++A N GLI ANP + I+ AF+ P K +M+++ P  LP LM +++ ASI   TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTVTRPAEAAETRWSEINLTDNTWTIPAGRMKMRRDHIIPLPPQALAILDAMKPIS  300
            EWQL T+TRPAEA+ +RW EIN  ++ WTIPA RMK RR+H IPL  Q LA+L+ MKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  GHREYLFPSSKDPKQPMNSQTANAALRRMGYKGVLVSHGLRAIFSTAANEEGFSPDVIEA  360
            GHR+++FPS + PK+P NSQTAN AL+RMG+ G LVSHGLR++ ST+ NE+GF PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHVDTNEVRRAYNRSTYLEQRKVLMCWWGEFVETAATGKVMASEGARGLR  412
            ALAHVD N+VR AYNR+ YLE+RK +MCWW+E +E AA G  ++  G++ L+
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGS-LSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  377 bits (1419),  Expect = 5e-106, Method: Compositional matrix adjust.
 Identities = 216/410 (53%), Positives = 303/410 (74%), Gaps = 0/410 (0%)

Query  1    MARNTNKLTAKTVVNAKPKDKPYRLSDGGGLYLYVRSAAAVSWEFRYIRPSTSKPTYFGL  60
            MA+NT KLT K +  +KP++K Y L DG+GL L +++ ++  W F Y RP+ +K + +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPDVSlaeareraliarKQVADAIDPQLLKVENKLKASTENAQTLKHIAQMWMDAKQG  120
            G YPD+SL +AR   L A+  +A++IDPQ  +  ++      + +T+ ++++ W   KQ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SIKAKTIEGNWRKLELYAFPKLGGIAVSKLTAPMAIAALKPLEQKGRLETVKRTAQLLNE  180
             + +    + WR LEL  FP +++ +V  +TAP  I  LKP+E KG LETVKR +Q LNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMSYSVNSGLIHSNPLSGIREVFRKSKVEHMKALKPHELTELLQTVATANLQLTTRCLIE  240
            +M+++ N GLI++NPL+GI+  F+K+K E+M AL P EL EL+ ++A A+++ TTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMARPNEAAGTRWDEIDLEAKLWVIPETRMKMKREHVIPLTEHMIAILEAIKPISG  300
            WQLHTM+RP EA+G+RWDEI+ E K+W IP  RMK +REH IPLTE+M+A+LE +KPISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HCEFVFPSSKDPKKHTDSETINKALGRMGFKGRTTAHGLRSLASTTLNEQGFDADVIEAA  360
            H +F+FPS + PKK  +S+T N AL RMGF GR  +HGLRSLASTTLNEQGFD+D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNQIRSAYNRTTYLERRMKLMDWWSNHIASAAIGSLSVTGFRNLR  410
            LAHVD NQ+RSAYNRT YLERR  +M WWS+HI  AA GSLSVTG ++L+
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  377 bits (1419),  Expect = 5e-106, Method: Compositional matrix adjust.
 Identities = 212/412 (52%), Positives = 313/412 (76%), Gaps = 1/412 (0%)

Query  1    MARKATPLTTTQIKAAKPAEKEYTLQDGGGLFLVIKPSGSKLWRFNYYRPSNKKRTIISL  60
            MA+++  LT  +IKA+KP EKEY L DG+GL L IKP+GSK W FNYYRP+N KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSLDEVSLADARKRRSEYRTLIASGIDPQHHerqkreaearrqGNTFENVAASWYEMKKN  120
            G   ++SL +ARK     + LIA GIDPQ++ +++++ +   + +TFENV+  W+ +K+N
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  QNLAHNTIKDIWRSLEKYVFPYIGNTPIDTLTARRFVEILTPIKTRGNLETLKRVLQRIN  180
            +  ++ ++ DIWRSLE  +FP I++ P+ ++TA  ++E+L PI ++G+LET+KR+ QR+N
Sbjct  121  DVTPDYAL-DIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDFAANSGLIDINTAANVRKAFPSPTKKHMPTIRPEQLPQLMHDLSIASIERQTRLLI  240
            EVM+FA+N GLI+ N  + ++ AF  P K +M+++ P +LP+LM  ++ ASI R TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTATRPAEASAARWEEINLDAATWTIPAGRMKMRRDHVIPLCAQAMAVLEAMKPIS  300
            EWQL T TRPAEAS+ARW+EIN +   WTIPA RMK RR+H IPL  Q +A+LE MKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  ARREHVFPSLKNPVQPMSSQTANAALRRMGYTGVLVSHGLRAIFSTAANEEGFEPDVIEA  360
            ++R+ +FPS + P +P +SQTAN AL+RMG++G LVSHGLR++ ST+ NE+GF+PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHVDTNEVRRAYNRSNYLEKRKVLMCWWGDFVEAASTGTTIASGHRGLRG  412
            ALAHVD N+VR AYNR++YLE+RK +MCWW++ +E A+ G+   +G + L+ 
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKN  411

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  377 bits (1417),  Expect = 7e-106, Method: Compositional matrix adjust.
 Identities = 214/412 (52%), Positives = 312/412 (76%), Gaps = 2/412 (0%)

Query  1    MAIQTKRLTNTEVKAAKAIDKELSLHDGGGLLLFVKPSGTKTWRFRYYQPQTKKRTTLTF  60
            MA +T +LT+ E+KA+K+ +KE +L DG+GL L +KP+G+K W F YY+P   KR+ L+F
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPAISLADARQMREAAKALLEKSIDPQFHqqqqreqeqAINLNTFAKVSADWYELKKS  120
            G YP ISL +AR+   +AK L+ ++IDPQ ++++Q++ ++ I+ +TF +V+ DW+ +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  QPLAENTIKDIWRSLEKYVFPFIGTLPITQLTARHFISALEPIQASGKLETVKRVSQRIN  180
            +  ++ ++ DIWRSLE  +FP I+  P+  +TA ++I  L PI+A G LETVKR++QR+N
Sbjct  121  DVTPDYAL-DIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPGLMKTLSVASIELQTRLLI  240
            EVM++A N GLI ANP + I+ AF+ P K +M+++ P  LP LM +++ ASI   TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTVTRPAEAAETRWSEINLKDNTWTIPAGRMKMRRDHIIPLPPQALAILDAMKPIS  300
            EWQL T+TRPAEA+ +RW EIN  ++ WTIPA RMK RR+H IPL  Q LA+L+ MKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  GHREYLFPSSKDPKQPMNSQTANAALRRMGYKGVLVSHGLRAIFSTAANEEGFPPDVIEA  360
            GHR+++FPS + PK+P NSQTAN AL+RMG+ G LVSHGLR++ ST+ NE+GF PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHVDTNEVRRAYNRSTYLEQRKVLMCWWGEFVETAATGKVMASEGARGLR  412
            ALAHVD N+VR AYNR+ YLE+RK +MCWW+E +E AA G  ++  G++ L+
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGS-LSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  376 bits (1415),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 215/410 (53%), Positives = 305/410 (75%), Gaps = 0/410 (0%)

Query  1    MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF  60
            MA++T  LTD EIKA+KP++ +Y+L+DGDGL L IK++GSK W F YYRP   +R++ SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPAVSLSDARKLRAESRVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKT  120
            G YP +SL +ARK    ++ L+A++IDPQ+++K Q +  +E   +TF  V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYADDIWRSLERDVFPAIGDISVTEIKAHTLVKAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  ++  ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIHPGQLPLLMKTMRMASISLSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P++LP LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPAEAAEARWDEIDFDTSEWKIPAARMKMNRDHTVPLSNEALSILEMMKSLSG  300
            WQL T+TRPAEA+ ARWDEI+ +   W IPA RMK  R+H +PL+++ L++LE+MK++SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  DREFIFPSRIKPTQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPSDVIEAA  360
            +R+FIFPS   P +P NSQT N ALKR G++G LVSHGLRS+AST+LNE+GF +D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVMAADNESQIEPGIKGMR  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A   S    G K ++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  376 bits (1413),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 213/412 (52%), Positives = 309/412 (75%), Gaps = 1/412 (0%)

Query  1    MARKTPPLTTVQIKAARPAEKEYTLQDGGGLFLLIKPSGSKLWRFSYYRPSDKKRILLSF  60
            MA++T  LT  +IKA++P EKEY L DG+GL L IKP+GSK W F+YYRP++ KR  LSF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSLDDVSLADARKRRSEYRALIRAGTDPQDHERQKRETEARRQGNTFENVATAWYQVKIS  120
            G   D+SL +ARK     + LI  G DPQD+ +++++ +   + +TFENV+  W+ +K  
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIK-Q  119

Query  121  QNLAPNTIKDIWRSLEKYVFPFIGNTPIDTLTARRFVEVLTPIKERGNLETLKRVLQRVN  180
            ++++P+   DIWRSLE  +FP I++ P+ ++TA  ++E+L PI  +G+LET+KR+ QR+N
Sbjct  120  NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDYAANSGMIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQALSVSATERQTRLLI  240
            EVM++A+N G+I+ANP   ++ AF  P K +M+++ P +LPELM A++ ++  R TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTVTRPVEASSARWEEIDMEAQRWTIPAGRMKMRRDHVIPLCDQAMAVLEAMKPIS  300
            EWQL T+TRP EAS+ARW+EI+ E + WTIPA RMK RR+H IPL +Q +A+LE MKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  HHRDYVFPSLKDPRQPMNSQTANAALRRMGFAGVLVSHGLRAIFSTAANEEGFEPDVIEA  360
             HRD++FPS + P++P NSQTAN AL+RMGFAG LVSHGLR++ ST+ NE+GF+PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHVDTNEVRRAYNRSNYIEKRVVLMRWWGEFVEAAATGVTLASGKRGIRA  412
            ALAHVD N+VR AYNR++Y+E+R  +M WW+E +E AA G    +G + ++ 
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKN  411

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  375 bits (1410),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 213/412 (52%), Positives = 310/412 (76%), Gaps = 2/412 (0%)

Query  1    MAIQAKPLTNTEVKAAKAIDKELSLHDGGGLLLFVKPSGTKTWRFRYYHPQTKKRTTLTF  60
            MA ++  LT+ E+KA+K+ +KE +L DG+GL L +KP+G+K W F YY+P   KR+ L+F
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPAISLADARQMREAAKALLEKSIDPQFHqqqqreqeqAINLNTFAKVSADWYEVKKS  120
            G YP ISL +AR+   +AK L+ ++IDPQ ++++Q++ ++ I+ +TF +V+ DW+ +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  QPLAENTIKDIWRSLEKYVFPFIGTLPITQLTARHFITALEPIQASGKLETVKRVIQRIN  180
            +  ++ ++ DIWRSLE  +FP I+  P+  +TA ++I  L PI+A G LETVKR+ QR+N
Sbjct  121  DVTPDYAL-DIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPGLMKTLSVASIELQTRLLI  240
            EVM++A N GLI ANP + I+ AF+ P K +M+++ P  LP LM +++ ASI   TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTVTRPAEAAETRWSEINLADNTWTIPAGRMKMRRDHIIPLPPQALAILDAMKPIS  300
            EWQL T+TRPAEA+ +RW EIN  ++ WTIPA RMK RR+H IPL  Q LA+L+ MKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  GHREYLFPSSKDPKQPMNSQTANAALRRMGYKGVLVSHGLRAIFSTAANEEGFPPDVIEA  360
            GHR+++FPS + PK+P NSQTAN AL+RMG+ G LVSHGLR++ ST+ NE+GF PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHVDTNEVRRAYNRSTYLEQRKILMCWWGEFVETAATGKVMASEGARGLR  412
            ALAHVD N+VR AYNR+ YLE+RK +MCWW+E +E AA G  ++  G++ L+
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGS-LSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  374 bits (1405),  Expect = 7e-105, Method: Compositional matrix adjust.
 Identities = 217/397 (55%), Positives = 295/397 (75%), Gaps = 0/397 (0%)

Query  1    MAKKVQPLTATQIKQAKPKEKEYNLGDGDGLSLKIKPIGTKLWRFSYYHPISRKRLNLAL  60
            MAK+   LT  +IK +KP+EKEYNL DGDGL L+IKP G+K W F+YY+P + KR NL++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GKYPDVSLAKARTKAIEARELLADGIDPKEHRDATLREKQLELANTLQSVFDDWIEVKRT  120
            G YPD+SL +AR   + A+EL+A+GIDP+++R    +  +    +T+++V  DW+ +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVKEQTAKKLKQRIEKYLLPDLGKFPLSDITAPQAIKTIKPIANQGKLETVGRLCRNLNE  180
             V  + A  + + +E  ++P+++  P+  ITAP+ I  +KPI  +G LETV RL + LNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTFAVNTGVIEHNKLAGIGKAFETAKVTNQASLAPDELPELLKTINYASIKPITRCLLE  240
            +M FA N G+I+ N L+GI  AF  +K  N A+L+P ELPEL+ +I  ASIK  TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAETAGARWDEIDREKMLWVIPAERMKKGRVHTVPLTKQTLDLLETIDFITG  300
            WQLHTMTRPAE++GARWDEI++E  +W IPAERMKK R H +PLT Q L LLE +  I+G
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  DSEYLFPADKSNKNHINKETANKALVRMGMKGRQTSHGLRALASTTLNEQNFDPDIIEAA  360
            + +++FP+D++ K+  N +TAN AL RMG  GR  SHGLR+LASTTLNEQ FDPD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LSHVDRDKVRSAYNRTDYLERRKVLMAWWSDHIEEAA  397
            L+HVD ++VRSAYNRTDYLERRK +M WWS+HIEEAA
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAA  397

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  372 bits (1397),  Expect = 3e-104, Method: Compositional matrix adjust.
 Identities = 209/395 (53%), Positives = 296/395 (75%), Gaps = 4/395 (1%)

Query  1    MARITRPLTNNEILKAKPREKDFTLHDGDGLFLLVKTSGKKLWRFRYQRPNSTSRTNLSL  60
            MA+ T  LT++EI  +KPREK++ L DGDGL L +K +G K W F Y RP +  R+NLS+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPALTLAAAR--LIRDQHLSLLAQDIDPqqqqeivseqrqiKLDSVFSTVAANWFQLK  118
            G YP ++L  AR  L+  ++L  +AQ+IDPQ+++    + ++   +  F  V+ +WF +K
Sbjct  61   GMYPDISLLQARKSLLSAKEL--IAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIK  118

Query  119  SKSVTPDYAKDIWRSLDKDVFPAIGEIPVQEIKARTIIEALEPIKARGALETVRRLVQRI  178
             + VTPDYA DIWRSL+ ++FP I++ PV+ I A  IIE L PI A+G+LETV+RL QR+
Sbjct  119  QNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  179  NEIMIYAVNTGLLDANPASGVGMAFERPKKQNMLTLRPEELPKLMRSIGMSNLSVPTRCL  238
            NE+M +A N GL++ANP +G+  AF +PKK+NM +L P ELP LM +I+ +++   TRCL
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  239  IELQLLTLVRPSEASGARWAEIDIDAKLWKIPAERMKAKREHIVPLSPQALEILEIMTPI  298
            +E QL T+ RP+EASGARW EI+ + K+W IPAERMK +REH +PL+ Q L +LE+M PI
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  299  SAHREYVFPSRNDPKQPMNSQTANAAIKRIGYGGRLVAHGLRSIASTAMNEEGFNPDVIE  358
            S+HR+++FPS   PK+P NSQTAN A+KR+G++GRLV+HGLRS+AST++NE+GF+PD++E
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  359  AALAHSDKNEVRRAYNRSTYLEARRELMDWWGSAI  393
            +ALAH D N+VR AYNR+ YLE R+ +M WW+  I
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  371 bits (1394),  Expect = 5e-104, Method: Compositional matrix adjust.
 Identities = 212/413 (52%), Positives = 312/413 (76%), Gaps = 1/413 (0%)

Query  1    MARKATPLTTTQIKAAKPAEKEYTLQDGGGLFLVIKPSGSKLWRFNYYRPSNKKRTLISL  60
            MA+++  LT  +IKA+KP EKEY L DG+GL L IKP+GSK W FNYYRP+N KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSLDEVSLADARKRRSEYRTLIAAGTDPqeyerqkreaearrqGNTFENVAALWYEMKKN  120
            G   ++SL +ARK     + LIA G DPQ+  +++++ +   + +TFENV+  W+ +K+N
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  QNLAHNTIKDIWRSLEKYVFPYIGNTPIDTLTARRFVEILTPIKARGNLETLKRVLQRIN  180
            +  ++ ++ DIWRSLE  +FP I++ P+ ++TA  ++E+L PI A+G+LET+KR+ QR+N
Sbjct  121  DVTPDYAL-DIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDFAANSGMIDINTAANVRKTFPSPTKKHMPTIRPEQLPQLMHDLSIASIERQTRLLI  240
            EVM+FA+N G+I+ N  + ++ +F  P K +M+++ P +LP+LM  ++ ASI R TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTATRPAEASAARWEEINLEAATWTIPAGRMKMRRDHVIPLCAQAMAVLEAMKPIS  300
            EWQL T TRPAEAS+ARW+EIN E   WTIPA RMK RR+H IPL  Q +A+LE MKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  ARREHVFPSLKNPVQPMSSQTANAALRRMGYTGVLVSHGLRAIFSTAANEEGFEPDVIEA  360
            ++R+ +FPS + P +P +SQTAN AL+RMG++G LVSHGLR++ ST+ NE+GF+PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHVDTNEVRRAYNRSNYLEKRKVLMCWWGDFVEAAATGTTIASGHRGLRGR  413
            ALAHVD N+VR AYNR++YLE+RK +MCWW++ +E AA G+   +G + L+ +
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNK  412

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  369 bits (1387),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 206/393 (53%), Positives = 295/393 (76%), Gaps = 0/393 (0%)

Query  1    MARITRPLTNNEILKAKPREKDFTLHDGDGLFLLVKTSGKKLWRFRYQRPASSSRTNLSL  60
            MA+ T  LT++EI  +KPREK++ L DGDGL L +K +G K W F Y RP+++ R+NLS+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPALTLAAARQIRDQHLTLLAQGIDPqqqqeqvseqrqieLDSIFTTVATNWFQLKSK  120
            G YP ++L  AR+       L+AQGIDPQ+++ +  + ++   +  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTADYAKDIWRSLDKDVFPAIGALPVQEIKARTIIEALGPIKARGALETVRRLVQRINE  180
             VT+DYA DIWRSL+ ++FP I+  PV+ I A  IIE L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPKLMHSLVMSNLSIPTRCLIE  240
            +M +A N GLI+ANP +G+  AF KPKK+NM++L P ELP LM ++  +++   TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASGTRWAEIDLDARLWTIPAERMKAKREHIVPLSPQALEILKVMKPISA  300
            WQL T+ RP+EASG+RW EI+ + ++WTIPAERMK +REH +PL+ Q L +L VMKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREHVFPSRNNPKQAMNSQTANAALKRIGFGGKLVAHGLRSIASTAMNEAGLNPDVIEAA  360
            HR+ +FPS   PK++ NSQTAN ALKR+GF+G+LV+HGLRS+AST++NE G++PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRKAYNRSSYIIQRIELMQWWAHFV  393
            LAH D N+VR AYNR+ Y+ +R  +M WW++ +
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  369 bits (1386),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 209/396 (53%), Positives = 297/396 (75%), Gaps = 0/396 (0%)

Query  1    MARTTRPLTNTEVSRAKATDKDLTLHDGDGLFLMVKTSGKKLWRFRYQRPTTKQRTMIGL  60
            MA+ T  LT+ E+  +K+ +K+  L DGDGL L +K +G K W F Y RPT  +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPALSLAEARGLRAQYLSLLARGIDPqiqaeqaeeqqqiaLESIFSNVAANWFAMKRN  120
            G +P +SL +AR        L+A+GIDPQ +  + ++ ++   E  F NV+ +WFA+K+N
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPDYAKDIWRSLEKDIFPAIGEIPVQKIRARTLVEALEPIKARGALETVRRLVQRINE  180
             VTPDYA DIWRSLE +IFP I++ PV+ I A  ++E L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSIPTRCLIE  240
            +M +A N GLI+ANP +GI  AF KPKK+NM++L P ELP LM ++  +++   TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEAAGTQWAEIDLDAKLWTIPAERMKAKREHIVPLSPQALEILEVMKPISA  300
            WQL T+ RP+EA+G++W EI+ + K+WTIPAERMK +REH +PL+ Q L +LEVMKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HRDHIFPSRNDPQQSMNSQTANAALKRIGYGGKLVAHGLRSIASTTLNEEGFNGDVIESA  360
            HRD IFPS   P+++ NSQTAN ALKR+G++G+LV+HGLRS+ASTTLNE+GF+ D++ESA
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHADKNEVRKAYNKSTYLNQRRDLMAWWGTKIKNS  396
            LAH D N+VR AYN++ YL++R+ +M WW+  I ++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEA  396

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  369 bits (1387),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 209/395 (53%), Positives = 296/395 (75%), Gaps = 4/395 (1%)

Query  1    MARITRPLTNNEILKAKPREKDFTLHDGDGLFLLVKTSGKKLWRFRYQRPGSSSRTNLSL  60
            MA+ T  LT++EI  +KPREK++ L DGDGL L +K +G K W F Y RP ++ R+NLS+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPALTLAAARQ--IRDQHLTTLAQGMDPqqqqeqaseqrqieLDSIFSTVAANWFQIK  118
            G YP ++L  AR+  +  ++L  +AQG+DPQ+++ +  + ++   +  F  V+ +WF IK
Sbjct  61   GMYPDISLLQARKSLLSAKEL--IAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIK  118

Query  119  SRSVTEDYAKDIWRSLDKDVFPAIGAIPVQEIKARTIVEALEPIKARGALETVRRLVQRV  178
               VT DYA DIWRSL+ ++FP I+  PV+ I A  I+E L PI A+G+LETV+RL QR+
Sbjct  119  QNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  179  NEIMIYAVNTGLIDANPASGVGMAFEKPKKKNMPTLQPEELPRLMRSLVMSNLSVATRCL  238
            NE+M +A N GLI+ANP +G+  AF KPKK NM++L P ELP LM ++  +++  +TRCL
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  239  IEWQLLTLVRPSEASGTSWAEIDLDAKLWTIPAERMKAKREHIVPLSPQALEILDVMKPI  298
            +EWQL T+ RP+EASG+ W EI+ + K+WTIPAERMK +REH +PL+ Q L +L+VMKPI
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  299  SAHREHVFPSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGLNPDVIE  358
            S+HR+ +FPS   PK+P NSQTAN ALKR+G++G+LV+HGLRS+AST++NE G++PD++E
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  359  AALAHSDRNEVRKAYNRTTYLSQRKDLMLWWGNFI  393
            +ALAH D N+VR AYNRT YL +RK +M WW++ I
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  369 bits (1385),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 207/395 (53%), Positives = 300/395 (76%), Gaps = 1/395 (0%)

Query  1    MAIQAKPLTNTEVKAAKATDKELSLHDGGGLLLFVKPSGTKTWRFRYYHPQTKKRTTLTF  60
            MA ++  LT+ E+KA+K+ +KE +L DG+GL L +KP+G+K W F YY+P   KR+ L+F
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPALSLADARQMREAAKALLEKGIDPQFHqqqqreqeqAISLNTFAKVAADWYEVKKS  120
            G YP +SL +AR+   +AK L+ +GIDPQ ++++Q++ ++ I  +TF +V+ DW+ +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  QPLAANTIKDIWRSLEKYVFPFIANQPISQLTARHFITALEPIQASGKLETVKRVSQRIN  180
            +  +  ++ DIWRSLE  +FP I+++P+  +TA ++I  L PI+A G LETVKR++QR+N
Sbjct  121  DVTPDYAL-DIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  181  EVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPTIRPEALPSLMKTLSVASIELQTRLLI  240
            EVM++A N GLI ANP + I+ AF+ P K +M+++ P  LP LM +++ ASI   TR L+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  241  EWQLLTVARPAEAAETRWSEIDLTQNTWTIPAGRMKMRREHVIPLLPQALAILDAMKPIS  300
            EWQL T++RPAEA+ +RW EI+  ++ WTIPA RMK RREH IPL  Q LA+L+ MKPIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  GHREYLFPSAKDPKQPMNSQTANAALRRMGYKGVLVSHGLRAIFSTAANEAGFPPDVIEA  360
            GHR+++FPS + PK+P NSQTAN AL+RMG+ G LVSHGLR++ ST+ NE GF PD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  361  ALAHVDTNEVRRAYNRSTYLEQRKVLMCWWGEFVE  395
            ALAHVD N+VR AYNR+ YLE+RK +MCWW+E +E
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIE  394

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  368 bits (1382),  Expect = 4e-103, Method: Compositional matrix adjust.
 Identities = 208/397 (53%), Positives = 297/397 (75%), Gaps = 2/397 (0%)

Query  1    MSRTTRPLTNTELSRAKATAKDLTLHDGNGLFLLVKTNGRKLWRFRYQKPVTKQRTMIGL  60
            M++ T  LT+ E+  +K+  K+  L DG+GL L +K NG K W F Y +P   +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSFPALSLAEARNTRAEYLSLLARGIDPQIYSE-QVTVQQQIAEDSIFSNVASKWFAIKR  119
            G +P +SL +AR++      L+A+GIDPQ     Q  V+++I E++ F NV+  WFAIK+
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHT-FENVTKDWFAIKQ  119

Query  120  NNVTPDYAKDVWRSLERDIFPTIGEIPVQKIKARTLIETLEPIKARGALETVRRLVQRIN  179
            N+VTPDYA D+WRSLE +IFP I++ PV+ I A  +IE L PI A+G+LETV+RL QR+N
Sbjct  120  NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  180  EIMIYAVNTGLIDANPASGIGMAFEKPKKKNMPTLRPEELPKLMYSLSMSNLSVQTRCLI  239
            E+M +A N GLI+ANP +GI  AF KPKK NM++L P ELP LM +++ +++   TRCL+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  240  EWQLLTLVRPSEASGTQWKEIDFDAKLWRIPAERMKAKREHIVPLSPKALDILEVMKTIS  299
            EWQL T+ RP+EASG++W EI+ + K+W IPAERMK +REH +PL+ + L +LEVMK IS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  300  AHREYVFPSRNDPQKPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAEFNADVIES  359
            +HR+++FPS   P+KP NSQTAN ALKR+G++G+LV+HGLRS+AST++NE  F++D++ES
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  360  ALAHSDKNEVRKAYNRSTYLEQRKNLMNWWSSFVHKS  396
            ALAH D N+VR AYNR+ YLE+RK +M WWS  ++ +
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEA  396

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  367 bits (1381),  Expect = 5e-103, Method: Compositional matrix adjust.
 Identities = 203/392 (52%), Positives = 295/392 (76%), Gaps = 0/392 (0%)

Query  1    MPRIARPLTHTEVSKARTPDKELSLHDGDGLFLLIKPSGKKLWRFRYLRPDTKKRTTLSF  60
            M++ +  LT+ E+  ++  +KE +L DGDGL L IKP+G K W F Y RP   KR+ LSF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPALSLAEARQLRAEHLALLAKGIDPqqkvakeeeeaqiaveSIFINVARNWFTLKQT  120
            G YP +SL +AR+       L+A+GIDPQ+   ++++  +   E  F NV+++WF++KQ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  KVSADHAKDIWRSLEKDVLPAIENIPVQEIKARTLIQALEPIKARGALETVRRLVQRINE  180
             V++D A DIWRSLE +++P I + PV+ I A  +I+ L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMVYAVNTGLIDANPASGIGMAFERPKKQHMPTIRPEEIPKLMRTIAMSNLSIPTRCLLE  240
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P E+P LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLIRPAEASATAWAEIDIEKRTWSIPAERMKAKRDHIVPLSDQALELLDIMRPISG  300
            WQL T+ RPAEAS++ W EI+ E + W+IPAERMK +R+H +PL++Q L LL++M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREHVFPSRNDPKKPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNPDVIEAA  360
            +R+ +FPS   PKKP NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF+PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHIESNDVRKAYNRSTYLEHRKELMDWWGMQ  392
            LAH++ N+VR AYNR+ YLE+RK +M WW+ +
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEH  392

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  367 bits (1378),  Expect = 8e-103, Method: Compositional matrix adjust.
 Identities = 205/396 (52%), Positives = 294/396 (75%), Gaps = 0/396 (0%)

Query  1    MARTTRPLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGL  60
            MA+ T  LT+ E+  +K+ EK+  L DGDGL L +K +G K W F Y RP+  +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPALSLADARGLRADYLALLANGIDPqiqaevveeqqqiaLDSIFSTVAANWFQLKSK  120
            G +P +SL +AR        L+A+GIDPQ +    ++ ++   +  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARILVEALEPIKARGALETVRRLVQRINE  180
             VTPDYA DIWRSLE ++FP I++ PV+ I A  ++E L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVPTRCLIE  240
            +M +A N GLI+ANP +GI  AF KPKK+NM++L P ELP LM ++  +++   TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASGARWAEIDLYAKLWTIPAERMKAKREHIVPLSPQALEILEVMKPISA  300
            WQL T+ RP+EASGARW EI+   K+WTIPAERMK +REH +PL+ Q L +LEVMKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREHVFPSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRAIASTAMNEAGLNSDVIEAA  360
            HR+ +FPS   PK+P NSQTAN ALKR+G++G+LV+HGLR++AST++NE G+++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHIEKNEVRRAYNRSTYLERRKELMSWWGNFIVNS  396
            LAH++ N+VR AYNR+ YLERRK +M WW++ I ++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEA  396

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  367 bits (1378),  Expect = 8e-103, Method: Compositional matrix adjust.
 Identities = 205/396 (52%), Positives = 294/396 (75%), Gaps = 0/396 (0%)

Query  1    MARTTRPLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGL  60
            MA+ T  LT+ E+  +K+ EK+  L DGDGL L +K +G K W F Y RP+  +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPALSLADARGLRADYLALLANGIDPqiqaevveeqqqiaLDSIFSTVAANWFQLKSK  120
            G +P +SL +AR        L+A+GIDPQ +    ++ ++   +  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARILVEALEPIKARGALETVRRLVQRINE  180
             VTPDYA DIWRSLE ++FP I++ PV+ I A  ++E L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVPTRCLIE  240
            +M +A N GLI+ANP +GI  AF KPKK+NM++L P ELP LM ++  +++   TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASGARWAEIDLYAKLWTIPAERMKAKREHIVPLSPQALEILEVMKPISA  300
            WQL T+ RP+EASGARW EI+   K+WTIPAERMK +REH +PL+ Q L +LEVMKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREHVFPSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRAIASTAMNEAGLNSDVIEAA  360
            HR+ +FPS   PK+P NSQTAN ALKR+G++G+LV+HGLR++AST++NE G+++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHIEKNEVRRAYNRSTYLERRKELMSWWGNFIVNS  396
            LAH++ N+VR AYNR+ YLERRK +M WW++ I ++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEA  396

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  367 bits (1378),  Expect = 8e-103, Method: Compositional matrix adjust.
 Identities = 205/396 (52%), Positives = 294/396 (75%), Gaps = 0/396 (0%)

Query  1    MARTTRPLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGL  60
            MA+ T  LT+ E+  +K+ EK+  L DGDGL L +K +G K W F Y RP+  +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPALSLADARGLRADYLALLANGIDPqiqaevveeqqqiaLDSIFSTVAANWFQLKSK  120
            G +P +SL +AR        L+A+GIDPQ +    ++ ++   +  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARILVEALEPIKARGALETVRRLVQRINE  180
             VTPDYA DIWRSLE ++FP I++ PV+ I A  ++E L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVPTRCLIE  240
            +M +A N GLI+ANP +GI  AF KPKK+NM++L P ELP LM ++  +++   TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASGARWAEIDLYAKLWTIPAERMKAKREHIVPLSPQALEILEVMKPISA  300
            WQL T+ RP+EASGARW EI+   K+WTIPAERMK +REH +PL+ Q L +LEVMKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREHVFPSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRAIASTAMNEAGLNSDVIEAA  360
            HR+ +FPS   PK+P NSQTAN ALKR+G++G+LV+HGLR++AST++NE G+++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHIEKNEVRRAYNRSTYLERRKELMSWWGNFIVNS  396
            LAH++ N+VR AYNR+ YLERRK +M WW++ I ++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEA  396

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  366 bits (1377),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 212/405 (53%), Positives = 298/405 (74%), Gaps = 0/405 (0%)

Query  4    NLTARQIQTAKPKDKLYRLSDGGNLYFCVRTSNSRSWQFRYKRPGQDKITYLSFGTYPDM  63
            +LT ++I+++KP++K Y L DG+ L + ++ + S+ W F Y RP ++K + LSFG YPD+
Sbjct  7    KLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDI  66

Query  64   SlaearekalearkMLADGIDPQLAKEEQKAKVIVEQNATFKFVAEQWKATKEGQIKEKT  123
            SL +AR   L A+ ++A+GIDPQ  +  Q+      ++ TF  V+ +W A K+ ++    
Sbjct  67   SLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDY  126

Query  124  LNGNWRKLELYAFPKLGTIPVSKITAPIAIAALRPVETQGLLETVKRTAQLMNEIMNYAV  183
              + WR LEL  FP ++  PV  ITAP  I  L+P+E++G LETVKR +Q +NE+MN+A 
Sbjct  127  ALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFAT  186

Query  184  NSGVIHSNPLSGIRDVFKKHKVVHMKALQPHEMHELIRTVATANIQHVTRFLIEWQLHTM  243
            N G+I++NPL+GI+  FKK K  +M AL P E+ EL+ ++A A+I++ TR L+EWQLHTM
Sbjct  187  NCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTM  246

Query  244  VRPNEASGARWEEIDMENQLWIIPKERMKMNREHVVPLTTQTLAILEAIKPISGHRDYIF  303
             RP EASGARW+EI+ E+++W IP ERMK  REH +PLT Q LA+LE +KPISGHRD+IF
Sbjct  247  TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIF  306

Query  304  PSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFDADVIEAALAHTDK  363
            PS R PK P +S+TAN AL RMGF +R  +HGLR+LASTTLNEQGFD+D++E+ALAH D 
Sbjct  307  PSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDD  366

Query  364  NQIRKAYNRTDYLDSRRKLMSWWSEHIDKSSYGSYSVTGSHHLRQ  408
            NQ+R AYNRTDYL+ R+ +M WWSEHI+ ++ GS SVTG+ +L++
Sbjct  367  NQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKN  411

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  366 bits (1377),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 204/393 (52%), Positives = 295/393 (76%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTHTEVQKAKATDKDLTLHDGNGLFLLVKTTGKKLWRFRYQKPTTGQRTMIGF  60
            MA+ T  LT+ E++ +K+ +K+  L DG+GL L +K  G K W F Y +PT G+R+ ++F
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPALSLADARAMRDEKLSLLAKGIDPQekaakeeeeakIAVESIFLNVARSWFALKQT  120
            G YP +SL +AR        L+A+GIDPQ+   ++++  K   E  F NV++ WFA+KQ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  NVSADHAKDIWRSLEKDVLPAIENIPVQDIKARTLIQALEPIKARGALETVRRLVQRINE  180
            +V++D A DIWRSLE +++P I + PV+ I A  +I+ L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMVYAVNTGLIDANPASGIGMAFERPKKQHMPTIRPEELPKLMHTIAMSNLSIPTRCLLE  240
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P ELP LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLIRPAEASATAWAEIDMEKRTWSIPAERMKAKRDHIVPLSDQALELLDIMRPISG  300
            WQL T+ RPAEAS++ W EI+ E + W+IPAERMK +R+H +PL++Q L LL++M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREHVFPSRNDPKKPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNPDVIEAA  360
            +R+ +FPS   PKKP NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF+PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHCDKNEVRRAYNRSTYLEQRKELMDWWGNFV  393
            LAH D N+VR AYNR+ YLE+RK +M WW++ +
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  365 bits (1373),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 204/390 (53%), Positives = 290/390 (75%), Gaps = 0/390 (0%)

Query  1    MARTTRPLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGL  60
            MA+ T  LT+ E+  +K+ EK+  L DGDGL L +K +G K W F Y RP+  +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPALSLADARGLRADYLALLANGIDPqiqaevaeeqqqiaLDSIFSTVAANWFQLKSK  120
            G +P +SL +AR        L+A+GIDPQ +    ++ ++   +  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPDYAKDIWRSLEKDVFPAIGETPVQQIKARTLVEALEPIKARGALETVRRLVQRINE  180
             VTPDYA DIWRSLE ++FP I++ PV+ I A  ++E L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLTVPTRCLIE  240
            +M +A N GLI+ANP +GI  AF KPKK+NM++L P ELP LM ++  +++   TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASGARWAEIDLDKKLWTIPAERMKAKREHIVPLSPQALGILDVMKPISA  300
            WQL T+ RP+EASGARW EI+ + K+WTIPAERMK +REH +PL+ Q L++L+VMKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREHVFPSRNDPKQSMNSQTANAALKRIGYGGRLVAHGLRSIASTALNESGFNADVIEAA  360
            HR+ +FPS   PK++ NSQTAN ALKR+G++GRLV+HGLRS+AST+LNE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRRAYNRSTYLNKRIELMAWWG  390
            LAH D N+VR AYNR+ YL++R  +M WW+
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWS  390

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  365 bits (1373),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 204/390 (53%), Positives = 290/390 (75%), Gaps = 0/390 (0%)

Query  1    MARTTRPLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGL  60
            MA+ T  LT+ E+  +K+ EK+  L DGDGL L +K +G K W F Y RP+  +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPALSLADARGLRADYLALLANGIDPqiqaevaeeqqqiaLDSIFSTVAANWFQLKSK  120
            G +P +SL +AR        L+A+GIDPQ +    ++ ++   +  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPDYAKDIWRSLEKDVFPAIGETPVQQIKARTLVEALEPIKARGALETVRRLVQRINE  180
             VTPDYA DIWRSLE ++FP I++ PV+ I A  ++E L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLTVPTRCLIE  240
            +M +A N GLI+ANP +GI  AF KPKK+NM++L P ELP LM ++  +++   TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASGARWAEIDLDKKLWTIPAERMKAKREHIVPLSPQALGILDVMKPISA  300
            WQL T+ RP+EASGARW EI+ + K+WTIPAERMK +REH +PL+ Q L++L+VMKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREHVFPSRNDPKQSMNSQTANAALKRIGYGGRLVAHGLRSIASTALNESGFNADVIEAA  360
            HR+ +FPS   PK++ NSQTAN ALKR+G++GRLV+HGLRS+AST+LNE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRRAYNRSTYLNKRIELMAWWG  390
            LAH D N+VR AYNR+ YL++R  +M WW+
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWS  390

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  365 bits (1373),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 204/390 (53%), Positives = 290/390 (75%), Gaps = 0/390 (0%)

Query  1    MARTTRPLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGL  60
            MA+ T  LT+ E+  +K+ EK+  L DGDGL L +K +G K W F Y RP+  +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPALSLADARGLRADYLALLANGIDPqiqaevaeeqqqiaLDSIFSTVAANWFQLKSK  120
            G +P +SL +AR        L+A+GIDPQ +    ++ ++   +  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPDYAKDIWRSLEKDVFPAIGETPVQQIKARTLVEALEPIKARGALETVRRLVQRINE  180
             VTPDYA DIWRSLE ++FP I++ PV+ I A  ++E L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLTVPTRCLIE  240
            +M +A N GLI+ANP +GI  AF KPKK+NM++L P ELP LM ++  +++   TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASGARWAEIDLDKKLWTIPAERMKAKREHIVPLSPQALGILDVMKPISA  300
            WQL T+ RP+EASGARW EI+ + K+WTIPAERMK +REH +PL+ Q L++L+VMKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREHVFPSRNDPKQSMNSQTANAALKRIGYGGRLVAHGLRSIASTALNESGFNADVIEAA  360
            HR+ +FPS   PK++ NSQTAN ALKR+G++GRLV+HGLRS+AST+LNE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRRAYNRSTYLNKRIELMAWWG  390
            LAH D N+VR AYNR+ YL++R  +M WW+
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWS  390

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  365 bits (1373),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 214/412 (52%), Positives = 302/412 (74%), Gaps = 3/412 (0%)

Query  1    MAIKVKPLTATQVLQAKPKDKVYNLGDGDGLSLKILPLGSKLWRFSYYRPVSRKRAHLAL  60
            MA +   LT  ++  +KP++K YNL DGDGL L+I P GSK W F+YYRP + KRA+L++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GIYPSVSLAKARTKAIEARKLLADGIDPKEQRDTTLKAQQIELSNTLQAVFEDWFAVKKT  120
            G+YP +SL +AR   + A+ L+A+GIDP+++R    + ++    +T++ V  DWFA+K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SIKELTAKKLKQRLDKYLLTYLGKFPIAEITAPQAIKILQPVANQGKLETVGRLCRNLNE  180
             +    A  + + L+  ++  ++  P+  ITAP+ I +L+P+  +G LETV RL + LNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTFAVNTGIIEHNKLAGIGKAFATAQVTNQASLKPEELPELLIALNYANIKLITRCLIE  240
            +M FA N G+I+ N L+GI  AF  ++  N A+L P ELPEL+ A+  A+IK  TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAETAGARWGEIDKENKLWHIPPERMKKGRPHTVPLTTQTLALLETIDSITG  300
            WQLHTMTRPAE++GARW+EI+ E+K+W IP+ERMKK R H +PLT Q LALLE + +I+G
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  DSEYIFPADKTNKKHICKETANKALARMGFKGRQTSHGLRALASTTLNEQNVFDADVIEA  360
            + ++IFP+D++ KK    +TAN AL RMGF GR  SHGLR+LASTTLNEQ  FD+D++E+
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDPDLVES  359

Query  361  ALSHVDKDKVRSAYNRTDYLERRRVLMGC-WSDHIEEASKGSNSITGLKALK  411
            AL+HVD ++VRSAYNRTDYLERR+ +M C WS+HIEEA++GS S+TG K LK
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMM-CWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  365 bits (1372),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 204/393 (52%), Positives = 295/393 (76%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTHTEVQKAKATDKDLTLHDGNGLFLLVKTTGKKLWRFRYQKPTTGQRTMIGF  60
            MA+ T  LT+ E++ +K+ +K+  L DG+GL L +K  G K W F Y +PT G+R+ ++F
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPALSLADARAMRDEKLSLLAKGIDPQekvakeeeeakiaveSIFLNVARSWFALKQT  120
            G YP +SL +AR        L+A+GIDPQ+   ++++  K   E  F NV++ WFA+KQ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  NVSADHAKDIWRSLEKDVLPAIENIPVQEIKARTLIQALEPIKARGALETVRRLVQRINE  180
            +V++D A DIWRSLE +++P I + PV+ I A  +I+ L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMVYAVNTGLIDANPASGIGMAFERPKKQHMPTIRPEELPKLMRTIAMSNLSIPTRCLLE  240
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P ELP LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLIRPAEASATAWAEIDIEKRTWSIPAERMKAKRDHIVPLSDQALELLDIMRPISG  300
            WQL T+ RPAEAS++ W EI+ E + W+IPAERMK +R+H +PL++Q L LL++M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREHVFPSRNDPKKPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNPDVIEAA  360
            +R+ +FPS   PKKP NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF+PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHCDKNEVRRAYNRSTYLEQRKELMDWWGNFV  393
            LAH D N+VR AYNR+ YLE+RK +M WW++ +
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  364 bits (1369),  Expect = 4e-102, Method: Compositional matrix adjust.
 Identities = 202/398 (51%), Positives = 292/398 (74%), Gaps = 0/398 (0%)

Query  1    MARTTRPLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGL  60
            MA+ T  LT+ E+  +K+ EK+  L DGDGL L +K +G K W F Y RP+  +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPALSLADARGLRADYLALLANEIDPqiqaevaeeqqqiaLDSIFSTVAANWFQLKSK  120
            G +P +SL +AR        L+A+ IDPQ +    ++ ++   +  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPEYAKDIWRSLEKDVFPAIGELPVQQIKARILVEALEPIKARGALETVRRLVQRINE  180
             VTP+YA DIWRSLE ++FP I++ PV+ I A  ++E L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNTGLIDTNPASGVGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVPTRCLIE  240
            +M +A N GLI++NP +G+  AF KPKK+NM++L P ELP LM ++  +++   TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASGARWSEIDLDAKLWTIPAERMKAKREHIVPLSTQALDILEVMKPISA  300
            WQL T+ RP+EASGARW EI+ + K+WTIPAERMK +REH +PL+ Q L +LEVMKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREHVFPSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRSIASTSMNEAGFNSDVIEAA  360
            HR+ +FPS   PK+P NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHIDKNEVRRAYNRSTYLQKRIELMSWWGALIRVSCR  398
            LAH+D N+VR AYNR+ YL++R  +M WW+  I  + R
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAAR  398

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  364 bits (1367),  Expect = 7e-102, Method: Compositional matrix adjust.
 Identities = 213/400 (54%), Positives = 293/400 (74%), Gaps = 0/400 (0%)

Query  4    NLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDM  63
            +LT ++I+++KP++K Y L DG+ L + ++P+ S+ W F Y RP ++K + LSFG YPD+
Sbjct  7    KLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDI  66

Query  64   SlaearekalearkQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKT  123
            SL +AR   L A+  +A+GIDPQ  +  Q+      ++ TF  V+ +W A K+ ++    
Sbjct  67   SLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDY  126

Query  124  LEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAV  183
              + WR LEL  FP ++  PV  +TAP  I  L+PIE++G LETVKR +Q +NE+MN+A 
Sbjct  127  ALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFAT  186

Query  184  NSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTM  243
            N G+I+ANPL+GI+  FKK K  +M AL P E+ +L+ ++A A+I++ TR L+EWQLHTM
Sbjct  187  NCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTM  246

Query  244  VRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIF  303
             RP EASGARW+EI+  +K+W IP ERMK  REH +PLT Q LA+LE +KPISGHR+FIF
Sbjct  247  TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIF  306

Query  304  PSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDK  363
            PS R PK P +S+TAN AL RMGF +R  +HGLR+LASTTLNEQGF+PD++E+ALAH D 
Sbjct  307  PSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDD  366

Query  364  NQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVAGT  403
            NQ+R AYNRTDYL+ R+ +M WWSEHIE ++ GS SV+GT
Sbjct  367  NQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGT  406

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  364 bits (1367),  Expect = 7e-102, Method: Compositional matrix adjust.
 Identities = 213/400 (54%), Positives = 293/400 (74%), Gaps = 0/400 (0%)

Query  4    NLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDM  63
            +LT ++I+++KP++K Y L DG+ L + ++P+ S+ W F Y RP ++K + LSFG YPD+
Sbjct  7    KLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDI  66

Query  64   SlaearekalearkQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKT  123
            SL +AR   L A+  +A+GIDPQ  +  Q+      ++ TF  V+ +W A K+ ++    
Sbjct  67   SLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDY  126

Query  124  LEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAV  183
              + WR LEL  FP ++  PV  +TAP  I  L+PIE++G LETVKR +Q +NE+MN+A 
Sbjct  127  ALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFAT  186

Query  184  NSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTM  243
            N G+I+ANPL+GI+  FKK K  +M AL P E+ +L+ ++A A+I++ TR L+EWQLHTM
Sbjct  187  NCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTM  246

Query  244  VRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIF  303
             RP EASGARW+EI+  +K+W IP ERMK  REH +PLT Q LA+LE +KPISGHR+FIF
Sbjct  247  TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIF  306

Query  304  PSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDK  363
            PS R PK P +S+TAN AL RMGF +R  +HGLR+LASTTLNEQGF+PD++E+ALAH D 
Sbjct  307  PSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDD  366

Query  364  NQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVAGT  403
            NQ+R AYNRTDYL+ R+ +M WWSEHIE ++ GS SV+GT
Sbjct  367  NQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGT  406

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  364 bits (1367),  Expect = 7e-102, Method: Compositional matrix adjust.
 Identities = 213/400 (54%), Positives = 293/400 (74%), Gaps = 0/400 (0%)

Query  4    NLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDM  63
            +LT ++I+++KP++K Y L DG+ L + ++P+ S+ W F Y RP ++K + LSFG YPD+
Sbjct  7    KLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDI  66

Query  64   SlaearekalearkQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKT  123
            SL +AR   L A+  +A+GIDPQ  +  Q+      ++ TF  V+ +W A K+ ++    
Sbjct  67   SLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDY  126

Query  124  LEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAV  183
              + WR LEL  FP ++  PV  +TAP  I  L+PIE++G LETVKR +Q +NE+MN+A 
Sbjct  127  ALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFAT  186

Query  184  NSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTM  243
            N G+I+ANPL+GI+  FKK K  +M AL P E+ +L+ ++A A+I++ TR L+EWQLHTM
Sbjct  187  NCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTM  246

Query  244  VRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIF  303
             RP EASGARW+EI+  +K+W IP ERMK  REH +PLT Q LA+LE +KPISGHR+FIF
Sbjct  247  TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIF  306

Query  304  PSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDK  363
            PS R PK P +S+TAN AL RMGF +R  +HGLR+LASTTLNEQGF+PD++E+ALAH D 
Sbjct  307  PSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDD  366

Query  364  NQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVAGT  403
            NQ+R AYNRTDYL+ R+ +M WWSEHIE ++ GS SV+GT
Sbjct  367  NQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGT  406

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  364 bits (1367),  Expect = 7e-102, Method: Compositional matrix adjust.
 Identities = 213/400 (54%), Positives = 293/400 (74%), Gaps = 0/400 (0%)

Query  4    NLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDM  63
            +LT ++I+++KP++K Y L DG+ L + ++P+ S+ W F Y RP ++K + LSFG YPD+
Sbjct  7    KLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDI  66

Query  64   SlaearekalearkQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKT  123
            SL +AR   L A+  +A+GIDPQ  +  Q+      ++ TF  V+ +W A K+ ++    
Sbjct  67   SLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDY  126

Query  124  LEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAV  183
              + WR LEL  FP ++  PV  +TAP  I  L+PIE++G LETVKR +Q +NE+MN+A 
Sbjct  127  ALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFAT  186

Query  184  NSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTM  243
            N G+I+ANPL+GI+  FKK K  +M AL P E+ +L+ ++A A+I++ TR L+EWQLHTM
Sbjct  187  NCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTM  246

Query  244  VRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIF  303
             RP EASGARW+EI+  +K+W IP ERMK  REH +PLT Q LA+LE +KPISGHR+FIF
Sbjct  247  TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIF  306

Query  304  PSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDK  363
            PS R PK P +S+TAN AL RMGF +R  +HGLR+LASTTLNEQGF+PD++E+ALAH D 
Sbjct  307  PSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDD  366

Query  364  NQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVAGT  403
            NQ+R AYNRTDYL+ R+ +M WWSEHIE ++ GS SV+GT
Sbjct  367  NQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGT  406

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  364 bits (1367),  Expect = 7e-102, Method: Compositional matrix adjust.
 Identities = 213/400 (54%), Positives = 293/400 (74%), Gaps = 0/400 (0%)

Query  4    NLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDM  63
            +LT ++I+++KP++K Y L DG+ L + ++P+ S+ W F Y RP ++K + LSFG YPD+
Sbjct  7    KLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDI  66

Query  64   SlaearekalearkQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKT  123
            SL +AR   L A+  +A+GIDPQ  +  Q+      ++ TF  V+ +W A K+ ++    
Sbjct  67   SLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDY  126

Query  124  LEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAV  183
              + WR LEL  FP ++  PV  +TAP  I  L+PIE++G LETVKR +Q +NE+MN+A 
Sbjct  127  ALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFAT  186

Query  184  NSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTM  243
            N G+I+ANPL+GI+  FKK K  +M AL P E+ +L+ ++A A+I++ TR L+EWQLHTM
Sbjct  187  NCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTM  246

Query  244  VRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIF  303
             RP EASGARW+EI+  +K+W IP ERMK  REH +PLT Q LA+LE +KPISGHR+FIF
Sbjct  247  TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIF  306

Query  304  PSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDK  363
            PS R PK P +S+TAN AL RMGF +R  +HGLR+LASTTLNEQGF+PD++E+ALAH D 
Sbjct  307  PSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDD  366

Query  364  NQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVAGT  403
            NQ+R AYNRTDYL+ R+ +M WWSEHIE ++ GS SV+GT
Sbjct  367  NQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGT  406

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  364 bits (1367),  Expect = 7e-102, Method: Compositional matrix adjust.
 Identities = 213/400 (54%), Positives = 293/400 (74%), Gaps = 0/400 (0%)

Query  4    NLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDM  63
            +LT ++I+++KP++K Y L DG+ L + ++P+ S+ W F Y RP ++K + LSFG YPD+
Sbjct  7    KLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDI  66

Query  64   SlaearekalearkQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKT  123
            SL +AR   L A+  +A+GIDPQ  +  Q+      ++ TF  V+ +W A K+ ++    
Sbjct  67   SLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDY  126

Query  124  LEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAV  183
              + WR LEL  FP ++  PV  +TAP  I  L+PIE++G LETVKR +Q +NE+MN+A 
Sbjct  127  ALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFAT  186

Query  184  NSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTM  243
            N G+I+ANPL+GI+  FKK K  +M AL P E+ +L+ ++A A+I++ TR L+EWQLHTM
Sbjct  187  NCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTM  246

Query  244  VRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIF  303
             RP EASGARW+EI+  +K+W IP ERMK  REH +PLT Q LA+LE +KPISGHR+FIF
Sbjct  247  TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIF  306

Query  304  PSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDK  363
            PS R PK P +S+TAN AL RMGF +R  +HGLR+LASTTLNEQGF+PD++E+ALAH D 
Sbjct  307  PSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDD  366

Query  364  NQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVAGT  403
            NQ+R AYNRTDYL+ R+ +M WWSEHIE ++ GS SV+GT
Sbjct  367  NQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGT  406

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  364 bits (1367),  Expect = 7e-102, Method: Compositional matrix adjust.
 Identities = 213/400 (54%), Positives = 293/400 (74%), Gaps = 0/400 (0%)

Query  4    NLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDM  63
            +LT ++I+++KP++K Y L DG+ L + ++P+ S+ W F Y RP ++K + LSFG YPD+
Sbjct  7    KLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDI  66

Query  64   SlaearekalearkQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKT  123
            SL +AR   L A+  +A+GIDPQ  +  Q+      ++ TF  V+ +W A K+ ++    
Sbjct  67   SLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDY  126

Query  124  LEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAV  183
              + WR LEL  FP ++  PV  +TAP  I  L+PIE++G LETVKR +Q +NE+MN+A 
Sbjct  127  ALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFAT  186

Query  184  NSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTM  243
            N G+I+ANPL+GI+  FKK K  +M AL P E+ +L+ ++A A+I++ TR L+EWQLHTM
Sbjct  187  NCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTM  246

Query  244  VRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIF  303
             RP EASGARW+EI+  +K+W IP ERMK  REH +PLT Q LA+LE +KPISGHR+FIF
Sbjct  247  TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIF  306

Query  304  PSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDK  363
            PS R PK P +S+TAN AL RMGF +R  +HGLR+LASTTLNEQGF+PD++E+ALAH D 
Sbjct  307  PSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDD  366

Query  364  NQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVAGT  403
            NQ+R AYNRTDYL+ R+ +M WWSEHIE ++ GS SV+GT
Sbjct  367  NQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGT  406

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  363 bits (1363),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 203/390 (53%), Positives = 288/390 (74%), Gaps = 0/390 (0%)

Query  1    MARTTRPLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGL  60
            MA+ T  LT+ E+  +K+ EK+  L DGDGL L +K +G K W F Y RP+  +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPALSLADARGLRTDYLALLANGIDPqiqaevaeeaqqiaLDSIFSTVAANWFQLKSK  120
            G +P +SL +AR        L+A+GIDPQ +    ++ ++   +  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARTLVEALEPIKARGALETVRRLVQRINE  180
             VTPDYA DIWRSLE ++FP I++ PV+ I A  ++E L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNTGLIDANPASGVGMAFEKPKKQSMPTLRPEELPKLMRSLIMSNLSVPTRCLIE  240
            +M +A N GLI+ANP +G+  AF KPKK++M++L P ELP LM ++  +++   TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASGARWAEIDLDAKLWTIPAERMKANREHVVPLSPQALEILEVMKPISA  300
            WQL T+ RP+EASGARW EI+ + K+WTIPAERMK  REH +PL+ Q L +LEVMKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREHVFPSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAA  360
            HR+ +FPS   PK+P NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LTHSDKNEVRRAYNRSTYLEARKELMDWWG  390
            L+H D N+VR AYNR+ YLE RK +M WW+
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWS  390

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  361 bits (1355),  Expect = 6e-101, Method: Compositional matrix adjust.
 Identities = 203/398 (52%), Positives = 292/398 (74%), Gaps = 0/398 (0%)

Query  1    MARTTRSLTNTEVLRTKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGL  60
            MA+ T  LT+ E+  +K+ EK+  L DGDGL L +K +G K W F Y RP+  +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPALSLADARGIRADYLALLANGIDPqiqaevaeeqqqiaLDSIFSTVAANWFQLKSK  120
            G +P +SL +AR        L+A+GIDPQ +    ++ ++   +  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPDYAKDIWRPLEKDVFPAIGEIPVQQIKARTLIEALEPIKARGALETVRRLVQRINE  180
             VTPDYA DIWR+LE ++FP I++ PV+ I A  +IE L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMHSLVMSNLSVSTCCFIE  240
            +M +A N GLI+ANP +GI  AF KPKK+NM++L P ELP LM ++  +++  +T C++E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASGARWAEIDLDTKLWTIPAERMKAKREHIVLLSPQALEILDVMKPISA  300
            WQL T+ RP+EASGARW EI+ + K+WTIPAERMK +REH + L+ Q L +L+VMKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREHVFPSRNDPKQAMNSQTANAALKRIGFGGKLVAHGLRSIASTAMNEAGFSPDIIEAA  360
            HR+ +FPS   PK++ NSQTAN ALKR+GF+G+LV+HGLRS+AST++NE GF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRRAYNRSTYLEQRKDLMSWWGLFVNKTIK  398
            LAH D N+VR AYNR+ YLE+RK +M WW+  ++ + +
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAAR  398

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  360 bits (1353),  Expect = 9e-101, Method: Compositional matrix adjust.
 Identities = 213/410 (52%), Positives = 305/410 (75%), Gaps = 0/410 (0%)

Query  1    MARQTKPLSVKEIESAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYIRPVTKTRAKKSI  60
            MA++T  L+ KEI ++KP+E +Y L+DGDGL L IK++GSK W F Y RP    RA+ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPSVTLADARNYRAESRSLLAKQIDPQEHQQEQLRSSLEAKTNTFQLVAERWWNVKKA  120
            G YP ++L +AR+    ++ L+A+ IDPQ++++ Q +   E   +TF+ V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAHTLVQAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  +++ ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLSQLMQTMRTASISLSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +L++LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPaeaaearweeVDIEAQEWKIPAARMKMNRDHTVPLSDEAIAVLEMMKPLSG  300
            WQL T+TRPAEA+ ARW+E++ E + W IPA RMK  R+H +PL+++ +A+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREFIFPSRIKPNQPMNSQTVNASLKRAGFGGVLVSHGLRSIASTALNEQGFPPDAIEAA  360
            +R+FIFPS   P++P NSQT N +LKR GF+G LVSHGLRS+AST+LNEQGF PD +E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWANFVMAADRGSMIEGGIKGMK  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A RGS+   G K +K
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  360 bits (1353),  Expect = 9e-101, Method: Compositional matrix adjust.
 Identities = 213/410 (52%), Positives = 305/410 (75%), Gaps = 0/410 (0%)

Query  1    MARQTKPLSVKEIESAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYIRPVTKTRAKKSI  60
            MA++T  L+ KEI ++KP+E +Y L+DGDGL L IK++GSK W F Y RP    RA+ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPSVTLADARNYRAESRSLLAKQIDPQEHQQEQLRSSLEAKTNTFQLVAERWWNVKKA  120
            G YP ++L +AR+    ++ L+A+ IDPQ++++ Q +   E   +TF+ V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAHTLVQAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  +++ ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLSQLMQTMRTASISLSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +L++LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPaeaaearweeVDIEAQEWKIPAARMKMNRDHTVPLSDEAIAVLEMMKPLSG  300
            WQL T+TRPAEA+ ARW+E++ E + W IPA RMK  R+H +PL+++ +A+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREFIFPSRIKPNQPMNSQTVNASLKRAGFGGVLVSHGLRSIASTALNEQGFPPDAIEAA  360
            +R+FIFPS   P++P NSQT N +LKR GF+G LVSHGLRS+AST+LNEQGF PD +E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWANFVMAADRGSMIEGGIKGMK  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A RGS+   G K +K
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  360 bits (1353),  Expect = 9e-101, Method: Compositional matrix adjust.
 Identities = 213/410 (52%), Positives = 305/410 (75%), Gaps = 0/410 (0%)

Query  1    MARQTKPLSVKEIESAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYIRPVTKTRAKKSI  60
            MA++T  L+ KEI ++KP+E +Y L+DGDGL L IK++GSK W F Y RP    RA+ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPSVTLADARNYRAESRSLLAKQIDPQEHQQEQLRSSLEAKTNTFQLVAERWWNVKKA  120
            G YP ++L +AR+    ++ L+A+ IDPQ++++ Q +   E   +TF+ V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAHTLVQAVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  +++ ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLSQLMQTMRTASISLSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +L++LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPaeaaearweeVDIEAQEWKIPAARMKMNRDHTVPLSDEAIAVLEMMKPLSG  300
            WQL T+TRPAEA+ ARW+E++ E + W IPA RMK  R+H +PL+++ +A+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREFIFPSRIKPNQPMNSQTVNASLKRAGFGGVLVSHGLRSIASTALNEQGFPPDAIEAA  360
            +R+FIFPS   P++P NSQT N +LKR GF+G LVSHGLRS+AST+LNEQGF PD +E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWANFVMAADRGSMIEGGIKGMK  410
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A RGS+   G K +K
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  359 bits (1347),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 210/397 (53%), Positives = 291/397 (74%), Gaps = 0/397 (0%)

Query  1    MAIKVQPLTATQVKQAKPKDKEYNLGDGDGLSLKVKPIGTKLWRFSYYHPITRKRLNLAL  60
            MA +   LT  ++K +KP++KEYNL DGDGL L++KP G+K W F+YY+P   KR NL++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GKYPDISLAKARSKAIEAREILADGIDPKEHRDNTLREKQLELSNTLQAVFDDWLEVKKT  120
            G YPDISL +AR   + A+E++A+GIDP+++R    +  +    +T++ V  DW+ +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SIKEQTAKKLKQRIEkyllpdlgklplgdITAPQAIKTIKPIANQGKLETVGRLCRNLNE  180
             +  + A  + + +E  ++P+++  P+  ITAP+ I  +KPI  +G LETV RL + LNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMTFAVNTGVIEHNRLAGIGKAFETAKVTNQASLDPKDLPELLKTINYASIKPITRCLLE  240
            +M FA N G+I+ N L+GI  AF  +K  N A+L P +LPEL+ +I  ASIK  TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPAETAGARWNEIDKEKMLWVIPAERMKKGRVHTVPLTKQTLDLLETIDFITG  300
            WQLHTMTRPAE++GARW+EI+ E  +W IPAERMKK R H +PLT Q L LLE +  I+G
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  ESEYLFPADKSNKNHINKETANKALVRMGFKGRQTSHGLRALASTTLNEQNFDSDIIEAA  360
            + +++FP+D++ K+  N +TAN AL RMGF GR  SHGLR+LASTTLNEQ FD+D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LSHVDRDKVRSAYNRTDYLERRKVLMAWWSNHIEEAA  397
            L+HVD ++VRSAYNRTDYLERRK +M WWS+HIEEAA
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAA  397

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  359 bits (1348),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 209/411 (51%), Positives = 305/411 (75%), Gaps = 0/411 (0%)

Query  1    MARLTKPLTDTEIKAAKPQEADYTLHDGDGLQLLIKSSGRKVWQMRYYRPLTKKRVKLTF  60
            MA+ T  LTD EIKA+KP+E +Y L DGDGL+L IK++G K W   YYRP   KR +L+F
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPEVTladarqrrtaarallVKDIDPYEHQLSLRKQALETQSNTFKVVAERWLQLKKS  120
            G YP+++L +AR+   +A+ L+ ++IDP +++   ++   E + +TF  V+  W+ +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTADYASDIRRSLEKDIFPAIGDISITDIKARTLVQAIQPVQARGALETVRRLCQRINE  180
             VT+DYA DI+RSLE +IFP I+D ++  I A  +++ ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAMNVGLIDAAPSVNISKAFEKPQKKHMPSIRPDQLPQLMQTMRLANIELPTCCLFM  240
            VM +A N GLI+A P   I  AF KP+K +M+++ P +LP+LM ++  A+I   T CL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLTRPVEAAETRWQEIDLDAKEWRIPAERMKMKRVHIVPLSEQALAILELMRPLSS  300
            WQL T+TRP EA+ +RW+EI+ + K W IPAERMK +R H +PL+EQ LA+LE+M+P+S+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPSRIKPLQPMNSQTVNAALKRAGLGGILVSHGMRSIASTALNEQGFPPDVIEAA  360
            HR+++FPS   P +P NSQT N ALKR G++G LVSHG+RS+AST+LNEQGF PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVKAADNGSVLEGGIRGLKA  411
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A  GS+   G + LK 
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKN  411

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  358 bits (1346),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 196/394 (50%), Positives = 290/394 (74%), Gaps = 0/394 (0%)

Query  28   MARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQVPGTSKRTMISL  87
            MA+ T  LT+ E++ +K+ +K+  L DGDGL L +K  G K W F Y  P  +KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  88   GAYPALSLADAREVRSEKLAILVKGIDPQARAGEEAEKLQIAQESIFVNVARKWFELKQS  147
            G YP +SL +AR        ++ +GIDPQ     + +  +  +E  F NV++ WF +KQ+
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  148  HVSADHAKDIWRSIEKDILPSIENVPIQELKARTLIQVLEPIKARGALETVRRLVQRINE  207
            +V++D A DIWRS+E +I+P I + P++ + A  +I++L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  208  IMIYAVNVGLIEANPASGIGNAFERPKKQHMPIIRPEELPKLMRTISMSNLSIPTRCLLE  267
            +M +A N GLI+ANP +GI  AF +PKK++M+ + P ELP LM +I+ +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  268  WQLLTLIRPAEASATAWSEIDIENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISG  327
            WQL T+ RPAEAS++ W EI+ E+K W IPAERMK +R+H +PL+EQ L LLE+M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  328  NRQYVFPSRNDPRKPMNSQTANAALKRIGYSGKLVAHGLRSIASTAMNEAGFNADVIEAA  387
            +R+++FPS   P+KP NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  388  LAHSDKNEVRRAYNRSTYLTQRVELLGWWGEFVN  421
            LAH D N+VR AYNR+ YL +R  ++ WW+E ++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIE  394

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  358 bits (1345),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 204/395 (52%), Positives = 295/395 (75%), Gaps = 0/395 (0%)

Query  1    MARTTRPLTNTEVLRAKALEKDLTLHDGDGLFLLVKTNGKKLWRFRYQRPATKQRTMMGL  60
            MA+ T  LT+ E+  +K+ EK+  L DGDGL L +K NG K W F Y RP+  +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPalsladarrlradylsllaNGIDPqiqaeiaeeqqqiaqDSIFSTVAANWFQLKSK  120
            G +P +SL +AR+       L+A+GIDPQ +    ++ ++  ++  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPDYAKDIWRSLEKDVFPAVGEMPVQQIKARTLVEALEPVKARGALETVRRLVQRINE  180
             VTPDYA DIWRSLE ++FP +++ PV+ I A  ++E L P+ A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSIPTRCLIE  240
            +M +A N GLI+ANP +G+  AF KPKK+NM++L P ELP LM ++  +++   TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASSTRWEEIDLHAKLWTIPAERMKAKREHIIPLSSQALEILNVMKPISA  300
            WQL T+ RP+EAS++RW+EI+ + K+WTIPAERMK +REH IPL+ Q L +L+VMKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPSRNDPKKPMNSQTANAALKRIGFGGKLVAHGLRSIASTAMNEAGLNPDVIESA  360
            HR+++FPS   PKKP NSQTAN ALKR+GF+G+LV+HGLRS+AST++NE G++PD++ESA
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRKAYNRSTYLVQRIELMDWWGEYVKN  395
            LAH D N+VR AYNR+ YL +R  +M WW+E + +
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEE  395

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  358 bits (1343),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 204/388 (53%), Positives = 285/388 (74%), Gaps = 0/388 (0%)

Query  4    NLTARQIQTAKPKDKLYRLSDGGNLYFCVRTSNSRSWQFRYKRPGQDKITYLSFGTYPDM  63
            +LT ++I+++KP++K Y L DG+ L + ++ + S+ W F Y RP ++K + LSFG YPD+
Sbjct  7    KLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDI  66

Query  64   SlaearekalearkMLADGIDPQLAKEEQKAKVIVEQNATFKFVAEQWKATKEGQIKEKT  123
            SL +AR   L A+ ++A+GIDPQ  +  Q+      ++ TF  V+ +W A K+ ++    
Sbjct  67   SLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDY  126

Query  124  LNGNWRKLELYAFPKLGTIPVSKITAPIAIAALRPVETQGLLETVKRTAQLMNEIMNYAV  183
              + WR LEL  FP ++  PV  ITAP  I  L+P+E++G LETVKR +Q +NE+MN+A 
Sbjct  127  ALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFAT  186

Query  184  NSGVIHSNPLSGIRDVFKKHKVVHMKALQPHEMHELIRTVATANIQHVTRFLIEWQLHTM  243
            N G+I++NPL+GI+  FKK K  +M AL P E+ EL+ ++A A+I++ TR L+EWQLHTM
Sbjct  187  NCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTM  246

Query  244  VRPNEASGARWDEIDIANRLWIIPKERMKMNREHLVPLTDQTMAILEAIKPISGHREFVF  303
             RP EASGARWDEI+  +++W IP ERMK  REH +PLT+Q +A+LE +KPISGHR+F+F
Sbjct  247  TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIF  306

Query  304  PSSRNPKVPTDSETANKALSRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDK  363
            PS R PK P +S+TAN AL RMGF +R  +HGLR+LASTTLNEQGF+PD++E+ALAH D 
Sbjct  307  PSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDD  366

Query  364  NQIRKAYNRTDYLDSRRRLMSWWSEHIE  391
            NQ+R AYNRTDYL+ R+ +M WWSEHIE
Sbjct  367  NQVRSAYNRTDYLERRKPMMCWWSEHIE  394

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  357 bits (1342),  Expect = 7e-100, Method: Compositional matrix adjust.
 Identities = 207/388 (54%), Positives = 284/388 (74%), Gaps = 0/388 (0%)

Query  4    NLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDM  63
            +LT ++I+++KP++K Y L DG+ L + ++P+ S+ W F Y RP ++K + LSFG YPD+
Sbjct  7    KLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDI  66

Query  64   SlaearekalearkQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKT  123
            SL +AR   L A+  +A+GIDPQ  +  Q+      ++ TF  V+ +W A K+ ++    
Sbjct  67   SLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDY  126

Query  124  LEGNWRKLELYAFPKLGSIPVSKLTAPIAIAALRPIESQGLLETVKRTAQLMNEIMNYAV  183
              + WR LEL  FP ++  PV  +TAP  I  L+PIE++G LETVKR +Q +NE+MN+A 
Sbjct  127  ALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFAT  186

Query  184  NSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTM  243
            N G+I+ANPL+GI+  FKK K  +M AL P E+ +L+ ++A A+I++ TR L+EWQLHTM
Sbjct  187  NCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTM  246

Query  244  VRPNEASGARWEEIDMVNKLWIIPKERMKMNREHIVPLTAQTLAILEAIKPISGHREFIF  303
             RP EASGARW+EI+  +K+W IP ERMK  REH +PLT Q LA+LE +KPISGHR+FIF
Sbjct  247  TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIF  306

Query  304  PSSRNPKVPTDSETANKALSRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDK  363
            PS R PK P +S+TAN AL RMGF +R  +HGLR+LASTTLNEQGF+PD++E+ALAH D 
Sbjct  307  PSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDD  366

Query  364  NQIRKAYNRTDYLDSRRKLMSWWSEHIE  391
            NQ+R AYNRTDYL+ R+ +M WWSEHIE
Sbjct  367  NQVRSAYNRTDYLERRKPMMCWWSEHIE  394

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  357 bits (1341),  Expect = 8e-100, Method: Compositional matrix adjust.
 Identities = 206/410 (51%), Positives = 294/410 (72%), Gaps = 6/410 (1%)

Query  1    MPKKIKPLSPTAVANAKAKPNQAGELKDTIFRDGDGLELLAKVSGSRRWYFRYYKPLTQK  60
            M+K+   L+   +  +K++ ++       +F DGDGL L  K +GS++W F YY+P   K
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYN-----LF-DGDGLRLRIKPNGSKQWIFNYYRPTNGK  54

Query  61   RTMIAIGEYPAIGLADARKIKDEYKSLLAQNIDPLDWGKQQQAIAQEENSHTLEKVATRW  120
            R+ +++G YP I+L +ARK     K L+AQ IDP D  K+QQ + +E + HT+E+V+  W
Sbjct  55   RANLSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDW  114

Query  121  IAIKRTTVTPDYANDVWRSLEKDIFPKLGKMPVSLLKAPMLVEILKPIQARGNLETIKRL  180
            +AIK+  VTPDYA D+WRSLE +IFP ++  PV  + AP ++E+LKPI+A+G+LET+KRL
Sbjct  115  FAIKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRL  174

Query  181  TQRTVEIMDFAMNAGIIDANPFTTVSKAFPKPKKKHNPTLKPDELPRLMRALSVAQIELS  240
            TQR  E+M+FA N G+I+ANP+T +  AF KPKK + ++L P ELP LM A++ A I  +
Sbjct  175  TQRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRT  234

Query  241  TRLVIEWQLLTVTRPGEAVQARWSEIDFDNKLWNVPAETMKMGHAHTIPLNQPALDILEV  300
            TR ++EWQL T+TRP+EA  ARW EI+ ++K+W +PAE MK  + H IPL +  L +LEV
Sbjct  235  TRCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEV  294

Query  301  MKPISGHREFVFPHRSEPSKSMNSQTANMALKRMGFEGLLTAHGMRAIASTAMNEQEFMP  360
            MKPISGHR+F+FP    P K+ NSQTANMALKRMGF G L +HG+R++AST++NEQ F P
Sbjct  295  MKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDP  354

Query  361  DAIEAVLAHREKNSVRAAYNRSTYLEQRKVIMDWWGQFVKGAATGDMTAA  410
            D +E+ LAH + N VR+AYNR+ YLE+RK +M WW++ +  AA G ++ +
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVT  404

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  356 bits (1338),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 205/393 (53%), Positives = 288/393 (74%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGL  60
            MA+ T  LT+ E+  +K+ EK+  L DGDGL L +K +G K W F Y RP+  +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPFPALSLADARGLRADYLALLANGIDPqvqaevaeeeLQIALDSIFLTVAANWFQLKSK  120
            G +P +SL +AR        L+A+GIDPQ +    ++  +   +  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARTLVEALEPIKARGALETVRRLVQRINE  180
             VTPDYA DIWRSLE ++FP I++ PV+ I A  ++E L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVPTRCLIE  240
            +M +A N GLI+ANP +G+  AF KPKK+NM++L P ELP LM ++  +++   TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASGARWAEIDLDSKLWTIPAERMKAKREHIVPLSSQALEILEVMKPISA  300
            WQL T+ RP+EASGARW EI+ + K+WTIPAERMK +REH +PL+ Q L +LEVMKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREHVFPSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRSIASTYLNEEGLESDIIESC  360
            HR+ +FPS   PK+P NSQTAN ALKR+G++G+LV+HGLRS+AST LNE+G+++D++ES 
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHIDKNEVRRAYNRSTYLERRKITMEYWGGFV  393
            LAH+D N+VR AYNR+ YLERRK  M  W+  +
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  355 bits (1334),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 201/393 (52%), Positives = 297/393 (76%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTNTEVLRAKALEKDLTLHDGDGLFLLVKTNGKKLWRFRYQRPATKQRTMMGL  60
            MA+ T  LT+ E+  +K+ EK+  L DGDGL L +K NG K W F Y RP+  +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GTFPalsladarrlradylsllaNGIDPqiqaeiaeeqqqiaqDSIFTTVAANWFQLKSK  120
            G +P +SL +AR+       L+A+GIDPQ +    ++ ++  ++  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPDYARDIWRSLEKDVFPAVGELPVQQIKARTLVEALEPVKARGALETVRRLVQRINE  180
             VTPDYA DIWRSLE ++FP +++ PV+ I A  ++E L P+ A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIFAVNTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPNLMRSLAMSNLSVSTRCLIE  240
            +M FA N GLI+ANP +G+  AF KPKK+NM++L P ELP+LM ++A +++  +TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASGTQWAEIDLENKLWTIPAGRMKAKREHIVPLSVRALDILEIMKPISA  300
            WQL T+ RP+EASG++W EI+ E+K+WTIPA RMK +REH +PL+ + L +LE+MKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPSRNNPKQPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEEGFNPDVIEAA  360
            HR+++FPS   PK+P NSQTAN ALKR+G++G+LV+HGLRS+AST++NE+GF+PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRKAYNRSTYLYQRIDLMNWWANFV  393
            LAH D N+VR AYNR+ YL +R  +M WW++ +
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  355 bits (1334),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 201/393 (52%), Positives = 297/393 (76%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTNTEVLRAKALEKDLTLHDGDGLFLLVKTNGKKLWRFRYQRPATKQRTMMGL  60
            MA+ T  LT+ E+  +K+ EK+  L DGDGL L +K NG K W F Y RP+  +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GTFPalsladarrlradylsllaNGIDPqiqaeiaeeqqqiaqDSIFTTVAANWFQLKSK  120
            G +P +SL +AR+       L+A+GIDPQ +    ++ ++  ++  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPDYARDIWRSLEKDVFPAVGELPVQQIKARTLVEALEPVKARGALETVRRLVQRINE  180
             VTPDYA DIWRSLE ++FP +++ PV+ I A  ++E L P+ A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIFAVNTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPNLMRSLAMSNLSVSTRCLIE  240
            +M FA N GLI+ANP +G+  AF KPKK+NM++L P ELP+LM ++A +++  +TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASGTQWAEIDLENKLWTIPAGRMKAKREHIVPLSVRALDILEIMKPISA  300
            WQL T+ RP+EASG++W EI+ E+K+WTIPA RMK +REH +PL+ + L +LE+MKPIS+
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPSRNNPKQPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEEGFNPDVIEAA  360
            HR+++FPS   PK+P NSQTAN ALKR+G++G+LV+HGLRS+AST++NE+GF+PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRKAYNRSTYLYQRIDLMNWWANFV  393
            LAH D N+VR AYNR+ YL +R  +M WW++ +
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  354 bits (1329),  Expect = 7e-99, Method: Compositional matrix adjust.
 Identities = 213/410 (52%), Positives = 296/410 (73%), Gaps = 2/410 (0%)

Query  1    MGRSTNKLTAKAVLNAKAEAKPYRLSDGGNLYLYVRTAG-KTWEFRYIRPSTSKPTYFGL  59
            M+++T KLT K +  +K+  K Y L DG+ L L ++  G K W F Y RP+ +K + +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  60   GSYPDVSLAEARDKALEARKNLAEGIDPQLLKVENKLKAATENAQTLKHIAQMWMDSKQG  119
            G YPD+SL +AR   L A+  +A+GIDPQ  +  ++      + +T+ ++++ W   KQ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  120  SIKPKTIEGNWRKLELYAFPKLGSIAISRLTAPIAIAALKPLEQKGHLETVKRTAQLLNE  179
             + P    + WR LEL  FP ++  ++  +TAP  I  LKP+E KG LETVKR +Q LNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  180  IMNYSVNSGYIHANPLSGIREVFRKSKVEHlkalkpaelaellQTVANANLLLTTRCLIE  239
            +MN++ N G I+ANPL+GI+  F+K+K E++ AL PAEL+EL+ ++ANA++  TTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  240  WQLHTMTRPNEAAGARWEEIDFDAKLWTIPESRMKMNREHIIPLTEHTLAILETVKPIGE  299
            WQLHTMTRP EA+GARW+EI+ + K+WTIP  RMK  REH IPLTE+ LA+LE +KPI+ 
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  300  HSQFVFPSSKDPKKHTDPETINKALGRMGLKGRTTGHGLRSLASTTLNEQGFDGDVIEAA  359
            H +F+FPS + PKK  +++T N AL RMG+ GR  +HGLRSLASTTLNEQGFD D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  360  LAHVDKNQIRSAYDRTTYLERRTKLMEWWSNHIATAAVGSLSVTAGSRKL  409
            LAHVD NQ+RSAY+RT YLERR  +M WWS+HI  AA GSLSVT G+++L
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVT-GTKQL  409

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  353 bits (1325),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 209/407 (52%), Positives = 304/407 (75%), Gaps = 0/407 (0%)

Query  1    MARQTKPLSVKEIESAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYIRPVTKKRAKKSI  60
            MA++T  L+ KEI ++KP+E +Y L+DGDGL L IK++GSK W F Y RP   KRA+ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPSVTLADARNYRAESRSLLAKQIDPQEHQQEQLRSSLEAKTNTFQLVAERWWNVKKA  120
            G YP ++L +AR+    ++ L+A+ IDPQ++++ Q +   E   +TF+ V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAHTLVQTVQPVQARGALETVRRLCQRINE  180
             VT DYA DIWRSLE ++FP I+D +V  I A  +++ ++P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISLSTRCLFM  240
            VM +A N GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTITRPaeaaearweeVDMEAREWKIPAARMKMNRDHTVPLSDEAIAILEMMKPLSG  300
            WQL T+TRPAEA+ ARW+E++ E + W IPA RMK  R+H +PL+++ +A+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NREFIFSSRIKPTQPMNSQTVNAALKRAGLGGILVSHGLRSIASTALNEEGLLPDVIEAA  360
            +R+FIF+S   P +P NSQT N ALKR G++G LVSHGLRS+AST+LNE+G+ PD++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHVDKNEVRRAYNRSDYLEQRRSMMQWWADFVMAADRGSMIEGGMR  407
            LAHVD N+VR AYNR+DYLE+R++MM WW++ +  A RGS+   G +
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTK  407

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 204/399 (52%), Positives = 292/399 (74%), Gaps = 0/399 (0%)

Query  1    MARTTRPLTNTEVLRAKAVDKELTLHDGDGLFLLVKTSGKKLWRFRYQRPKTKQRTMMGL  60
            MA+ T  LT+ E+  +K+ +KE  L DGDGL L +K +G K W F Y RP   +R+ +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAFPalsladarrlraEYLSLLANGIDPqtqaeqateqqqIALESIFSTVAANWFQLKSK  120
            G +P +SL +AR+       L+A+GIDPQ +  +  + ++   E  F  V+ +WF +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARTLVEALEPIKVRGALETVRRLVQRINE  180
             VTPDYA DIWRSLE ++FP I++ PV+ I A  ++E L PI  +G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYATNTGLIDANPGSGIGMAFEKPKKQNMPTLRPEELPNLMRSLAMSNLSVTTRCLIE  240
            +M +ATN GLI+ANP +GI  AF KPKK+NM++L P ELP+LM ++A +++  TTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLVRPSEASGTRWIEIDFAAKLWVIPAERMKSKREHIVPLSPQALDILEVLKPISV  300
            WQL T+ RP+EASG+RW EI+   K+W IPAERMK +REH +PL+ Q L +LEV+KPIS 
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPSRNDPRQPMNSQTANAALKRIGYRGKLVAHGLRSIASTALNESNFNSDVIESA  360
            HR+++FPS   P++P NSQTAN ALKR+G+ G+LV+HGLRS+AST+LNE  F++D++ESA
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDRNEVRKAYNRSIYLKQRVELMDWWGNFVKVTNKS  399
            LAH D N+VR AYNR+ YL +R  +M WW++ +  + ++
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARG  399

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  352 bits (1323),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 213/408 (53%), Positives = 294/408 (73%), Gaps = 1/408 (0%)

Query  1    MGRSTNKLTAKAVLNAKAEAKPYRLSDGGNLYLYVRTAG-KTWEFRYIRPSTSKPTYFGL  59
            M+++T KLT K +  +K+  K Y L DG+ L L ++  G K W F Y RP+ +K + +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  60   GSYPDVSLAEARDKALEARKNLAEGIDPQLLKVENKLKAATENAQTLKHIAQMWMDSKQG  119
            G YPD+SL +AR   L A+  +A+GIDPQ  +  ++      + +T+ ++++ W   KQ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  120  SIKPKTIEGNWRKLELYAFPKLGSIAISRLTAPIAIAALKPLEQKGHLETVKRTAQLLNE  179
             + P    + WR LEL  FP ++  ++  +TAP  I  LKP+E KG LETVKR +Q LNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  180  IMNFSVNSGYIHANPLSGIREVFRKSKVEHlkalkpaelaellQTIANANLLLTTRCLIE  239
            +MNF+ N G I+ANPL+GI+  F+K+K E++ AL PAEL+EL+ +IANA++  TTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  240  WQLHTMTRPNEAAGARWEEIDFDAKLWTIPESRMKMNREHIIPLTEHTLAILETVKPISE  299
            WQLHTMTRP EA+GARW+EI+ + K+WTIP  RMK  REH IPLTE+ LA+LE +KPIS 
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  300  QSQFVFPSSKDPQKHTDPETINKALGRMGLKGRTTGHGLRSLASTTLNEQGFDGDVIEAA  359
            + +F+FPS + P+K  +++T N AL RMG+ GR  +HGLRSLASTTLNEQGFD D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  360  LAHVDKNQIRSAYNRTTYLERRTKLMEWWSNHIATAAVGSLSVTASSR  407
            LAHVD NQ+RSAYNRT YLERR  +M WWS+HI  AA GSLSVT++ +
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQ  408

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  352 bits (1321),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 214/410 (53%), Positives = 296/410 (73%), Gaps = 2/410 (0%)

Query  1    MGRSTNKLTAKAVLNAKAEAKPYRLSDGGNLYLYVRTAG-KTWEFRYIRPSTSKPTYFGL  59
            M+++T KLT K +  +K+  K Y L DG+ L L ++  G K W F Y RP+ +K + +++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  60   GSYPDVSLAEARDKALEARKNLAEGIDPQLLKVENKLKAATENAQTLKHIAQMWMDSKQG  119
            G YPD+SL +AR   L A+  +A+GIDPQ  +  ++      + +T+ ++++ W   KQ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  120  SIKPKTIEGNWRKLELYAFPKLGSIAISRLTAPIAIAALKPLEQKGHLETVKRTAQLLNE  179
             + P    + WR LEL  FP ++  ++  +TAP  I  LKP+E KG LETVKR +Q LNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  180  IMNFSVNSGYIHANPLSGIREVFRKSKVEHlkalkpaelaellQTIANANLLLTTRCLIE  239
            +MNF+ N G I+ANPL+GI+  F+K+K E++ AL PAEL+EL+ +IANA++  TTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  240  WQLHTMTRPNEAAGARWEEIDFDAKLWTIPESRMKMNREHIIPLTEHTLTILETVKPISE  299
            WQLHTMTRP EA+GARW+EI+ + K+WTIP  RMK  REH IPLTE+ L++LE +KPIS 
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  300  QSQFVFPSSKDPQKHTDPETINKALGRMGLKGRTTGHGLRSLASTTLNEQGFDGDVIEAA  359
            + +F+FPS + P+K  +++T N AL RMG+ GR  +HGLRSLASTTLNEQGFD D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  360  LAHVDKNQIRSAYNRTTYLERRTKLMEWWSNHIATAAVGSLSVTAGSRKL  409
            LAHVD NQ+RSAYNRT YLERR  +M WWS+HI  AA GSLSVT G+++L
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVT-GTKQL  409

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  351 bits (1318),  Expect = 5e-98, Method: Compositional matrix adjust.
 Identities = 206/403 (52%), Positives = 300/403 (75%), Gaps = 0/403 (0%)

Query  11   LSVKEIESAKPKGADYVLYDGDGLELLIKSSGSKIWQFRYIRPVTKKCAKKSIGPYPSVT  70
            L+ KEI ++KP+  +Y L+DGDGL L IK++GSK W F Y RP   K A+ S+G YP ++
Sbjct  8    LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS  67

Query  71   LADARNYRAESRSLLAKQIDPQEHQQEQLRSSLEAKTNTFQLVAERWWNVKKAGVTEDYA  130
            L +AR+    ++ L+A+ IDPQ++++ Q +   E   +TF+ V+  W  +K+ +VT DYA
Sbjct  68   LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA  127

Query  131  DDIWRSLERDVFPAIGDISVTDIKAHTLVQAIQPVQARGALETVRRLCQRINEVMIYAQN  190
             DIWRSLE ++FP I+D +V  I A  +++ ++P++A+G+LETV+RL QR+NEVM +A N
Sbjct  128  LDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN  187

Query  191  TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISLSTRCLFMWQLLTIT  250
             GLI+A P   I  AF KP+K NM+++ P +LP+LM ++  ASI  +TRCL+ WQL T+T
Sbjct  188  CGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTMT  247

Query  251  RPaeaaearweeVDIEAREWKIPAARMKMNRDHTVPLSDEAIAVLEMMEPLSGNREFIFP  310
            RPAEA+ ARW+E++ E + W IPA RMK  R+H +PL+++ +A+LE+M P+SG+R+FIFP
Sbjct  248  RPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIFP  307

Query  311  SRIKPNQPMNSQTVNASLKRAGFGGMLVSHGLRSIASTALNEQGFPPDVIEAALAHVDKN  370
            S   P++P NSQT N +LKR GF+G LVSHGLRS+AST+LNEQGF PD++E+ALAHVD N
Sbjct  308  SDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDDN  367

Query  371  EVRRAYNRSDYLEQRRPMMQWWADFIITTDRENLVKSGLRGIR  413
            +VR AYNR+DYLE+R+PMM WW++ I  + R +L  +G + ++
Sbjct  368  QVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  350 bits (1314),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 212/410 (52%), Positives = 299/410 (73%), Gaps = 6/410 (1%)

Query  1    MVRQTKPLSVKEIESAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYIRPVTKTRAKKSI  60
            M ++T  L+ KEI ++KP+E +Y L+DGDGL L IK++GSK W F Y RP    RA+ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPSVTLADARNYRAESRSLLAKQIDPQEHQQEQLRSSLEAKTNTFQLVAERWWNVKKA  120
            G YP ++L +AR+    ++ L+A+ IDPQ++++ Q +   E   +TF+ V+  W  +K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAH------TPVQARGALETVRRLCQRINE  174
             VT DYA DIWRSLE ++FP I+D +V  I A        P++A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  175  VMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLSQLMQTMRTASISLSTRCLFM  234
            VM +A N GLI+A P   I  AF KP+K NM+++ P +L++LM ++  ASI  +TRCL+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  235  WQLLTITRPaeaaearweeVDIEAQEWKIPAARMKMNRDHTVPLSDEAIAVLEMMKPLSG  294
            WQL T+TRPAEA+ ARW+E++ E + W IPA RMK  R+H +PL+++ +A+LE+MKP+SG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  295  NREFIFPSRIKPNQPMNSQTVNASLKRAGFGGVLVSHGLRSIASTALNEQGFPPDAIEAA  354
            +R+FIFPS   P++P NSQT N +LKR GF+G LVSHGLRS+AST+LNEQGF PD +E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  355  LAHVDKNEVRRAYNRSDYLEQRRPMMQWWANFVMAADRGSMIEGGIKGMK  404
            LAHVD N+VR AYNR+DYLE+R+PMM WW++ +  A RGS+   G K +K
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 193/393 (50%), Positives = 288/393 (74%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISL  60
            MA+ T  LT+ E++ +K+ +K+  L DGDGL L +K  G K W F Y  P ++KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPALSLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKES  120
            G YP +SL +AR        ++ +G DPQ     + +  +  +E  F NV++ WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  HVSAAHAKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINE  180
            +V++  A DIWRS+E +I+P I + P++ + A  +I++L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLE  240
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P ELP LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLIRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISG  300
            WQL T+ RPAEAS++ W EI+ E+K W IPAERMK +R+H +PL+EQ L LLE+M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NRQHVFPSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAA  360
            +R+ +FPS   P++  NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRKAYNRSTYLIQRQELMNWWGLEI  393
            LAH D N+VR AYNR+ YL +R+ +M WW+ +I
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 193/393 (50%), Positives = 288/393 (74%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISL  60
            MA+ T  LT+ E++ +K+ +K+  L DGDGL L +K  G K W F Y  P ++KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPALSLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKES  120
            G YP +SL +AR        ++ +G DPQ     + +  +  +E  F NV++ WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  HVSAAHAKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINE  180
            +V++  A DIWRS+E +I+P I + P++ + A  +I++L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLE  240
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P ELP LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLIRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISG  300
            WQL T+ RPAEAS++ W EI+ E+K W IPAERMK +R+H +PL+EQ L LLE+M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NRQHVFPSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAA  360
            +R+ +FPS   P++  NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRKAYNRSTYLIQRQELMNWWGLEI  393
            LAH D N+VR AYNR+ YL +R+ +M WW+ +I
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 193/393 (50%), Positives = 288/393 (74%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISL  60
            MA+ T  LT+ E++ +K+ +K+  L DGDGL L +K  G K W F Y  P ++KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPALSLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKES  120
            G YP +SL +AR        ++ +G DPQ     + +  +  +E  F NV++ WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  HVSAAHAKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINE  180
            +V++  A DIWRS+E +I+P I + P++ + A  +I++L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLE  240
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P ELP LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLIRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISG  300
            WQL T+ RPAEAS++ W EI+ E+K W IPAERMK +R+H +PL+EQ L LLE+M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NRQHVFPSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAA  360
            +R+ +FPS   P++  NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRKAYNRSTYLIQRQELMNWWGLEI  393
            LAH D N+VR AYNR+ YL +R+ +M WW+ +I
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 193/393 (50%), Positives = 288/393 (74%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISL  60
            MA+ T  LT+ E++ +K+ +K+  L DGDGL L +K  G K W F Y  P ++KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPALSLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKES  120
            G YP +SL +AR        ++ +G DPQ     + +  +  +E  F NV++ WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  HVSAAHAKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINE  180
            +V++  A DIWRS+E +I+P I + P++ + A  +I++L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLE  240
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P ELP LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLIRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISG  300
            WQL T+ RPAEAS++ W EI+ E+K W IPAERMK +R+H +PL+EQ L LLE+M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NRQHVFPSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAA  360
            +R+ +FPS   P++  NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRKAYNRSTYLIQRQELMNWWGLEI  393
            LAH D N+VR AYNR+ YL +R+ +M WW+ +I
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 193/393 (50%), Positives = 288/393 (74%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISL  60
            MA+ T  LT+ E++ +K+ +K+  L DGDGL L +K  G K W F Y  P ++KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPALSLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKES  120
            G YP +SL +AR        ++ +G DPQ     + +  +  +E  F NV++ WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  HVSAAHAKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINE  180
            +V++  A DIWRS+E +I+P I + P++ + A  +I++L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLE  240
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P ELP LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLIRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISG  300
            WQL T+ RPAEAS++ W EI+ E+K W IPAERMK +R+H +PL+EQ L LLE+M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NRQHVFPSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAA  360
            +R+ +FPS   P++  NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRKAYNRSTYLIQRQELMNWWGLEI  393
            LAH D N+VR AYNR+ YL +R+ +M WW+ +I
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 193/393 (50%), Positives = 288/393 (74%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISL  60
            MA+ T  LT+ E++ +K+ +K+  L DGDGL L +K  G K W F Y  P ++KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPALSLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKES  120
            G YP +SL +AR        ++ +G DPQ     + +  +  +E  F NV++ WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  HVSAAHAKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINE  180
            +V++  A DIWRS+E +I+P I + P++ + A  +I++L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLE  240
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P ELP LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLIRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISG  300
            WQL T+ RPAEAS++ W EI+ E+K W IPAERMK +R+H +PL+EQ L LLE+M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NRQHVFPSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAA  360
            +R+ +FPS   P++  NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRKAYNRSTYLIQRQELMNWWGLEI  393
            LAH D N+VR AYNR+ YL +R+ +M WW+ +I
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 193/393 (50%), Positives = 288/393 (74%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISL  60
            MA+ T  LT+ E++ +K+ +K+  L DGDGL L +K  G K W F Y  P ++KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPALSLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKES  120
            G YP +SL +AR        ++ +G DPQ     + +  +  +E  F NV++ WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  HVSAAHAKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINE  180
            +V++  A DIWRS+E +I+P I + P++ + A  +I++L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLE  240
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P ELP LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLIRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISG  300
            WQL T+ RPAEAS++ W EI+ E+K W IPAERMK +R+H +PL+EQ L LLE+M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NRQHVFPSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAA  360
            +R+ +FPS   P++  NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRKAYNRSTYLIQRQELMNWWGLEI  393
            LAH D N+VR AYNR+ YL +R+ +M WW+ +I
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 193/393 (50%), Positives = 288/393 (74%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISL  60
            MA+ T  LT+ E++ +K+ +K+  L DGDGL L +K  G K W F Y  P ++KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPALSLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKES  120
            G YP +SL +AR        ++ +G DPQ     + +  +  +E  F NV++ WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  HVSAAHAKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINE  180
            +V++  A DIWRS+E +I+P I + P++ + A  +I++L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLE  240
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P ELP LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLIRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISG  300
            WQL T+ RPAEAS++ W EI+ E+K W IPAERMK +R+H +PL+EQ L LLE+M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NRQHVFPSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAA  360
            +R+ +FPS   P++  NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRKAYNRSTYLIQRQELMNWWGLEI  393
            LAH D N+VR AYNR+ YL +R+ +M WW+ +I
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 193/393 (50%), Positives = 288/393 (74%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISL  60
            MA+ T  LT+ E++ +K+ +K+  L DGDGL L +K  G K W F Y  P ++KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPALSLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKES  120
            G YP +SL +AR        ++ +G DPQ     + +  +  +E  F NV++ WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  HVSAAHAKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINE  180
            +V++  A DIWRS+E +I+P I + P++ + A  +I++L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLE  240
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P ELP LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLIRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISG  300
            WQL T+ RPAEAS++ W EI+ E+K W IPAERMK +R+H +PL+EQ L LLE+M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NRQHVFPSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAA  360
            +R+ +FPS   P++  NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRKAYNRSTYLIQRQELMNWWGLEI  393
            LAH D N+VR AYNR+ YL +R+ +M WW+ +I
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 193/393 (50%), Positives = 288/393 (74%), Gaps = 0/393 (0%)

Query  1    MARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISL  60
            MA+ T  LT+ E++ +K+ +K+  L DGDGL L +K  G K W F Y  P ++KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GAYPALSLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKES  120
            G YP +SL +AR        ++ +G DPQ     + +  +  +E  F NV++ WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  HVSAAHAKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINE  180
            +V++  A DIWRS+E +I+P I + P++ + A  +I++L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMIYAVNVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLE  240
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P ELP LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTLIRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISG  300
            WQL T+ RPAEAS++ W EI+ E+K W IPAERMK +R+H +PL+EQ L LLE+M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  NRQHVFPSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAA  360
            +R+ +FPS   P++  NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHSDKNEVRKAYNRSTYLIQRQELMNWWGLEI  393
            LAH D N+VR AYNR+ YL +R+ +M WW+ +I
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  348 bits (1308),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 193/393 (50%), Positives = 288/393 (74%), Gaps = 0/393 (0%)

Query  12   MARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISL  71
            MA+ T  LT+ E++ +K+ +K+  L DGDGL L +K  G K W F Y  P ++KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  72   GAYPALSLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKES  131
            G YP +SL +AR        ++ +G DPQ     + +  +  +E  F NV++ WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  132  HVSAAHAKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINE  191
            +V++  A DIWRS+E +I+P I + P++ + A  +I++L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  192  IMIYAVNVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLE  251
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P ELP LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  252  WQLLTLIRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISG  311
            WQL T+ RPAEAS++ W EI+ E+K W IPAERMK +R+H +PL+EQ L LLE+M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  312  NRQHVFPSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAA  371
            +R+ +FPS   P++  NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  372  LAHSDKNEVRKAYNRSTYLIQRQELMNWWGLEI  404
            LAH D N+VR AYNR+ YL +R+ +M WW+ +I
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  348 bits (1308),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 193/393 (50%), Positives = 288/393 (74%), Gaps = 0/393 (0%)

Query  12   MARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISL  71
            MA+ T  LT+ E++ +K+ +K+  L DGDGL L +K  G K W F Y  P ++KR+ +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  72   GAYPALSLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKES  131
            G YP +SL +AR        ++ +G DPQ     + +  +  +E  F NV++ WF +K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  132  HVSAAHAKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINE  191
            +V++  A DIWRS+E +I+P I + P++ + A  +I++L PI A+G+LETV+RL QR+NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  192  IMIYAVNVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLE  251
            +M +A N GLI+ANP +GI  AF +PKK++M+++ P ELP LM +IA +++   TRCLLE
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  252  WQLLTLIRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISG  311
            WQL T+ RPAEAS++ W EI+ E+K W IPAERMK +R+H +PL+EQ L LLE+M+PISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  312  NRQHVFPSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAA  371
            +R+ +FPS   P++  NSQTAN ALKR+G++G+LV+HGLRS+AST++NE GF++D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  372  LAHSDKNEVRKAYNRSTYLIQRQELMNWWGLEI  404
            LAH D N+VR AYNR+ YL +R+ +M WW+ +I
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  348 bits (1305),  Expect = 5e-97, Method: Compositional matrix adjust.
 Identities = 194/395 (50%), Positives = 294/395 (75%), Gaps = 0/395 (0%)

Query  1    MPRNVTALSATQVKQAKPRDAEYNLSDGKGLALRIKPNGSKLWIFNYSKPHTKKRSNIGI  60
            M++N   L+  ++K +KPR+ EYNL DG GL LRIKPNGSK WIFNY +P   KR+N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPDVSLADAREHREAFRKLLAkdvdpkehkdhekekALFSASQTFESVAKQWFEIHAS  120
            G YPD+SL +AR    + + L+A+++DP++++ ++++       +TFE+V+K+WF I  +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  KVSEGTLKNIKRSFSNDVFPLVGRVPIEQLTAPKAIEVINAIVGRNSHEIARKVARRMNS  180
             V+ +   +I RS+  ++FP ++  P+  +TAP  IE++++I ++ S E  +++++R+N 
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMTYAVNAGIIHHNPLIGIKELIPSTKVKHQPTLQPEELPELVKALKYSSAKITTRCLIE  240
            VM +A N G+I+ NPL GIK  +   K  + ++L P ELPEL+ A+  +S K TTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  FQLHTMVRPGEAAEAKWSEIDFSQSIWAIPAERMKMDRPHLVPLTPQVLEILELMKPLSF  300
             QLHTM RP+EA+ A+W EI+  + +W+IPAERMK  R H +PLT Q+L +LE+MKP+S 
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPSHVDPKKPANKQSANKALRDMGFRGRLVAHGMRALASTTLNEEGFDHDVIEAA  360
            HR+++FPS+  PKKP N Q+AN AL+ MGF GRLV+HG+R+LASTTLNE+GFD D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHKDENEVRAAYNRAQYLDRRRSMMEWWSNKIVE  395
            LAH D+N+VR+AYNR++YL+RR++MM WWS+ I E
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEE  395

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  348 bits (1305),  Expect = 5e-97, Method: Compositional matrix adjust.
 Identities = 194/395 (50%), Positives = 294/395 (75%), Gaps = 0/395 (0%)

Query  1    MPRNVTALSATQVKQAKPRDAEYNLSDGKGLALRIKPNGSKLWIFNYSKPHTKKRSNIGI  60
            M++N   L+  ++K +KPR+ EYNL DG GL LRIKPNGSK WIFNY +P   KR+N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPDVSLADAREHREAFRKLLAkdvdpkehkdhekekALFSASQTFESVAKQWFEIHAS  120
            G YPD+SL +AR    + + L+A+++DP++++ ++++       +TFE+V+K+WF I  +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  KVSEGTLKNIKRSFSNDVFPLVGRVPIEQLTAPKAIEVINAIVGRNSHEIARKVARRMNS  180
             V+ +   +I RS+  ++FP ++  P+  +TAP  IE++++I ++ S E  +++++R+N 
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMTYAVNAGIIHHNPLIGIKELIPSTKVKHQPTLQPEELPELVKALKYSSAKITTRCLIE  240
            VM +A N G+I+ NPL GIK  +   K  + ++L P ELPEL+ A+  +S K TTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  FQLHTMVRPGEAAEAKWSEIDFSQSIWAIPAERMKMDRPHLVPLTPQVLEILELMKPLSF  300
             QLHTM RP+EA+ A+W EI+  + +W+IPAERMK  R H +PLT Q+L +LE+MKP+S 
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPSHVDPKKPANKQSANKALRDMGFRGRLVAHGMRALASTTLNEEGFDHDVIEAA  360
            HR+++FPS+  PKKP N Q+AN AL+ MGF GRLV+HG+R+LASTTLNE+GFD D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHKDENEVRAAYNRAQYLDRRRSMMEWWSNKIVE  395
            LAH D+N+VR+AYNR++YL+RR++MM WWS+ I E
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEE  395

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  348 bits (1305),  Expect = 5e-97, Method: Compositional matrix adjust.
 Identities = 194/395 (50%), Positives = 294/395 (75%), Gaps = 0/395 (0%)

Query  1    MPRNVTALSATQVKQAKPRDAEYNLSDGKGLALRIKPNGSKLWIFNYSKPHTKKRSNIGI  60
            M++N   L+  ++K +KPR+ EYNL DG GL LRIKPNGSK WIFNY +P   KR+N+++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPDVSLADAREHREAFRKLLAkdvdpkehkdhekekALFSASQTFESVAKQWFEIHAS  120
            G YPD+SL +AR    + + L+A+++DP++++ ++++       +TFE+V+K+WF I  +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  KVSEGTLKNIKRSFSNDVFPLVGRVPIEQLTAPKAIEVINAIVGRNSHEIARKVARRMNS  180
             V+ +   +I RS+  ++FP ++  P+  +TAP  IE++++I ++ S E  +++++R+N 
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  VMTYAVNAGIIHHNPLIGIKELIPSTKVKHQPTLQPEELPELVKALKYSSAKITTRCLIE  240
            VM +A N G+I+ NPL GIK  +   K  + ++L P ELPEL+ A+  +S K TTRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  FQLHTMVRPGEAAEAKWSEIDFSQSIWAIPAERMKMDRPHLVPLTPQVLEILELMKPLSF  300
             QLHTM RP+EA+ A+W EI+  + +W+IPAERMK  R H +PLT Q+L +LE+MKP+S 
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  HREYVFPSHVDPKKPANKQSANKALRDMGFRGRLVAHGMRALASTTLNEEGFDHDVIEAA  360
            HR+++FPS+  PKKP N Q+AN AL+ MGF GRLV+HG+R+LASTTLNE+GFD D++E+A
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  361  LAHKDENEVRAAYNRAQYLDRRRSMMEWWSNKIVE  395
            LAH D+N+VR+AYNR++YL+RR++MM WWS+ I E
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEE  395

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  346 bits (1298),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 203/363 (56%), Positives = 271/363 (75%), Gaps = 0/363 (0%)

Query  2    VKSNGSKLWSFRYIRPLTKKRAKKSLGAYPAVSLAEARSYRLEARTLLAKQIDPQDHQKE  61
            +K+NGSK W F Y RP   KRA+ S+G YP +SL +AR   L A+ L+A+ IDPQD++K 
Sbjct  35   IKPNGSKQWIFNYYRPTNGKRANLSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKR  94

Query  62   QIRNTLEAKKNTFQLVAERWWEVKKSTVTEDYGKDIWRSLERDVFPAIGDISVIDIKAHI  121
            Q +   E   +TF+ V+  W  +K++ VT DY+ DIWRSLE ++FP I+D +V  I A  
Sbjct  95   QQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPE  154

Query  122  LVKAIQPVQARGALETARRLCQRINEVMIYAQNTGLIDAVPSINIGKAFEKPKKNNMPSI  181
            ++  ++P++A+G+LET +RL QR+NEVM +A N GLI+A P   I  AF KPKK+NM+++
Sbjct  155  IIELLKPIEAKGSLETVKRLTQRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAAL  214

Query  182  PPDQLPKLMQTMRTASISLSTRCLFMWQLLTISRPAEAAEARWDEINFETKEWKIPAARM  241
             P +LP LM ++  ASI  +TRCL+ WQL T++RPAEA+ ARWDEIN E K W IPA RM
Sbjct  215  TPAELPELMSAIANASIKRTTRCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERM  274

Query  242  KMNREHTVPLSNATLAILELMKPFSGNREFIFPSRIKPTQPMNSQTVNAALKRAGFGGVL  301
            K  REH +PL++  LA+LE+MKP+SG+R+FIFPS   P +P NSQT N ALKR GF+G L
Sbjct  275  KKRREHRIPLTEQMLALLEVMKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRL  334

Query  302  VSHGLRSIASTALNEQGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFIE  361
            VSHGLRS+AST+LNEQGF PD++E+ALAHVD N+VR AYNR+DYLE+R+PMM WW++ IE
Sbjct  335  VSHGLRSLASTTLNEQGFDPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIE  394

Query  362  TAD  364
             A 
Sbjct  395  EAA  397

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  341 bits (1279),  Expect = 6e-95, Method: Compositional matrix adjust.
 Identities = 213/411 (52%), Positives = 301/411 (74%), Gaps = 5/411 (1%)

Query  1    MAKIIKPLSPTDVSTAETKESEYNLSDGNGLFLRVKPVGSKFWIFNYQRPITKKRANLTL  60
            MAK    L+  ++ ++  +E EYNL DG+GL LR+KP GSK WIFNY RP   KRANL++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GRYPDLPLAKARTKAIEARELLAEGIDPKEHRDSTLKAKQAELSNTLQVVFEDWFTVKKT  120
            G YPD++L +AR   + A+EL+A+GIDP+++R    +  +    +T++ V  DWF++K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  SIKELTAKKLKQRLDKYLLTYLGKFPISEITAPQTIKILQPVANQGKLETVARLCRNLNE  180
             +    A  + + L+  ++  ++  P+  ITAP+ I +L+P+  +G LETV RL + LNE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMVFAVNTGIIEHNKLAGIGKAFANAQVTNQASLKPEELPELLTALNYADIKLITRCLIE  240
            +M FA N G+I+ N L+GI  AF +++  N A+L P ELPEL++A+  A IK  TRCL+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLHTMTRPSETAGARWDEIDRENKLWHIPAERMKKGRPHtvllttqtlalletIDAITG  300
            WQLHTMTRP+E++GARWDEI++E+K+W IPAERMKK R H + LT Q LALLE + +I+G
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  DSEYIFPADKTNKKHINKETANKALQRMGFKGRQTSHGLRALASTTLNEQNVFDADVIEA  360
            + ++IFP+D++ KK  N +TAN AL+RMGF GR  SHGLR+LASTTLNEQ  FD+D++E+
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDPDLVES  359

Query  361  ALSHVD--KVRSAYNRTDYLERRRVLMGC-WSDHIEAASKGSNSITGLKGM  408
            AL+HVD  +VRSAYNRTDYLERR+ +M C WS+HIE A++GS S+TG K +
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMM-CWWSEHIEEAARGSLSVTGTKQL  409

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  339 bits (1273),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 202/412 (50%), Positives = 291/412 (71%), Gaps = 3/412 (0%)

Query  1    MSHLIHRLKDKEIEQAQGRDRIYRLPDGGGLYLLVKPNNLKYWEFRYTKPGTKNRTFLGL  60
            M+    +L DKEI  ++ R++ Y L DG+GL L +KPN  K W F Y +P   +R+ L++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSLDMLNVDGARDKAFEMRKLLKEGIDPKLDRIEKRTQIQQE-QACTFKSVADEWVktkt  119
            G    +++  AR   +  + L+ +GIDP+ DR  ++ Q+++E +  TF +V+ +W   K 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDR-KRQQQVHKEIHEHTFENVTKDWFAIKQ  119

Query  120  klkpkt-VQGNWRKLELYAFPKFGEIPVKSLTPIIVQEAFRPIARRGKLETVKRTIQLVN  178
            +        + WR LEL  FP +++ PVK++T+  + E ++PI  +G LETVKR  Q +N
Sbjct  120  NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLN  179

Query  179  EIMRFAINSGLIQHNVLSGVGETFASPDVKHMAVLKPDELTELLQTVATANMQLATKCLI  238
            E+M FA N GLIQ N L+G+  +F  P   +MA L P EL EL+ ++A A+++ +T+CL+
Sbjct  180  EVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLL  239

Query  239  EWQLHTMTRPSEAAGARWDEIDIENRLWIIPDTRMKMKREHRIPLTDQTIAILERIHPIS  298
            EWQLHTMTRP+EA+GARWDEI+ E+++W IP  RMK +REHRIPLT+Q +A+LE + PIS
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  299  GHRVHVFPSMRFPKRSIDSETINKALGRIGFKDRTTAHGMRSLASTTLNERGFDPDIIEA  358
            GHR  +FPS R PK++ +S+T N AL R+GF +R  +HG+RSLASTTLNE+GFDPD++E+
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVES  359

Query  359  ALAHQDRNAIRAAYNRTDYLERRRKMMEWWSSYIDDAAVGSLSVTGAVHLRA  410
            ALAH D N +R+AYNRTDYLERR+ MM WWS  I++AA GSLSVTG+ +L+ 
Sbjct  360  ALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKN  411

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  334 bits (1252),  Expect = 9e-93, Method: Compositional matrix adjust.
 Identities = 188/369 (51%), Positives = 279/369 (76%), Gaps = 6/369 (1%)

Query  34   GMDLYLLVKTSDKKLWRFRYQRPTSSSRTNLSLGSYAALTLAVARQMRDKYLSLLAQGID  93
            G +L L +K ++ K W F Y RPT++ R+NLS+G Y+ ++L  AR+       L+AQGID
Sbjct  28   GDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDISLLQARKSLLSAKELIAQGID  87

Query  94   PQ---KQQEEVSEQRQIELDSIFLVVAGRWFQLKRKSVTVNYAKDIWRSLEKDIFLSIGE  150
            PQ   K+Q++V  +++I+ +  F  V+  WF +K++ VT +YA DIWRSLE +IF  I++
Sbjct  88   PQDDRKRQQQV--HKEIH-EHTFENVTKDWFAIKQNDVTPDYALDIWRSLELHIFPHISD  144

Query  151  IPVQTLKARTIVKALEPIKPRGALETIPRLVQRINEIMIYAVNTGLIDANPASGVGMAFE  210
             PV+++ A  I+  L PI ++G+LET+ RL QR+NE+M +A N GLI+ANP +G+  AF 
Sbjct  145  KPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATNCGLIQANPLTGIKAAFK  204

Query  211  KPKKQNMPTFRPEELPKLMRSLIMSNLSVSTRCLIEWQLLTLVRPSEASGTRWQEIDLDT  270
            KPKK+NM+++ P ELP LM ++  +++  +TRCL+EWQL T+ RP+EASG+RW+EI+ + 
Sbjct  205  KPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTMTRPAEASGARWDEINWEE  264

Query  271  KLWTIPAVRMKAKREHIVPLSPQALDILEVMKAISAHREYVFPSRNDPQQPMNSQTANAA  330
            K+WTIPA RMK +REH +PL+ Q L +LEVMK+IS+HR+++FPS   P++P NSQTAN A
Sbjct  265  KVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIFPSDRAPKKPCNSQTANMA  324

Query  331  LKRIGYGGKLVAHGLRSIASTAMNEAGFKADVIEAALAHSDKNEVRSAYNRSTYLVLRQE  390
            LKR+G++G+LV+HGLRS+AST++NE GF +D++E+ALAH D N+VRSAYNR+ YL  R+ 
Sbjct  325  LKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDDNQVRSAYNRTDYLERRKP  384

Query  391  LVTWWSNLV  399
            ++ WWS+ +
Sbjct  385  MMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  333 bits (1251),  Expect = 8e-93, Method: Compositional matrix adjust.
 Identities = 181/336 (54%), Positives = 255/336 (76%), Gaps = 0/336 (0%)

Query  2    MGLGAFPALSLADARGLRADYLALLANGIDPQIQTEVAEEQQQIALDSIFSTVAANWFQL  61
            +++G +P +SL +AR        L+A+GIDPQ +    ++ ++   +  F  V+ +WF +
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAI  117

Query  62   KSKSVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARTLVEALEPIKARGALETVRRLVQR  121
            K + VTPDYA DIWRSLE ++FP I++ PV+ I A  ++E L PI A+G+LETV+RL QR
Sbjct  118  KQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQR  177

Query  122  INEIMIYAVNTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVSTRC  181
            +NE+M +A N GLI+ANP +G+  AF KPKK+NM++L P ELP LM ++  +++  +TRC
Sbjct  178  LNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRC  237

Query  182  LIEWQLLTLVRPSEASGARWAEIDLDAKLWTIPAERMKAKREHIVPLSTQALEILEVMKP  241
            L+EWQL T+ RP+EASGARW EI+ + K+WTIPAERMK +REH +PL+ Q L +LEVMKP
Sbjct  238  LLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKP  297

Query  242  ISAHREHVFPSRNDPKQSMNSQTANAALKRIGYGGKLVAHGLRSIASTTLNEAGFNADVI  301
            IS+HR+ +FPS   PK++ NSQTAN ALKR+G++G+LV+HGLRS+ASTTLNE GF++D++
Sbjct  298  ISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLV  357

Query  302  EAALAHTDKNEVRRAYNRSIYLKQRIGMMEWWGEKV  337
            E+ALAH D N+VR AYNR+ YL +R  MM WW+E +
Sbjct  358  ESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  331 bits (1242),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 194/372 (53%), Positives = 278/372 (75%), Gaps = 4/372 (1%)

Query  1    MARITRPLTNNEILKAKPREKDFTLHDGDGLFLLVKTTGKKLWRFRYQRPVSGSLTNLSL  60
            MA+ T  LT++EI  +KPREK++ L DGDGL L +K  G K W F Y RP +G  +NLS+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPALTLAAARQ--IRDQHLTTLAQGMDPqqqqelaseqrqFELGSIFSTVAANWFQLK  118
            G YP ++L  AR+  +  ++L  +AQG+DPQ+++    + ++      F  V+ +WF +K
Sbjct  61   GMYPDISLLQARKSLLSAKEL--IAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIK  118

Query  119  SKSVTEDYAKDIWRSLDKDVFPAIGSIPVQEIKARTIVEALEPIKARGALETVRRLVQRV  178
             + VT DYA DIWRSL+ ++FP I+  PV+ I A  I+E L PI A+G+LETV+RL QR+
Sbjct  119  QNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  179  NEIMIYAVNTGLVDANPASGVGMAFEKPKKQNMPTLRPEELPRLMRSLVMSNLSVATRCL  238
            NE+M +A N GL++ANP +G+  AF KPKK+NM++L P ELP LM ++  +++  +TRCL
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  239  IEWQLLTLVRPSEASGARWAEIDLDTKLWTIPAERMKAKREHIVPLSPQALDIIEVMKPV  298
            +EWQL T+ RP+EASGARW EI+ + K+WTIPAERMK +REH +PL+ Q L ++EVMKP+
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  299  SAHREHVLPSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRSIASTALNEHCFNADVIE  358
            S+HR+ ++PS   PK+P NSQTAN ALKR+G++G+LV+HGLRS+AST+LNE+ F++D++E
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  359  AALAHCDKNEVR  370
            +ALAH D N+VR
Sbjct  359  SALAHVDDNQVR  370

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  328 bits (1230),  Expect = 5e-91, Method: Compositional matrix adjust.
 Identities = 199/410 (49%), Positives = 292/410 (72%), Gaps = 1/410 (0%)

Query  1    MAKTT-PLSDTQIRLTKASDKVITLSDGGGLQLRIKPNGSKLWQLRFNKPIEKKPALMGF  59
            MAK T  L+D +I+ +K+ +K   L DG+GL+LRIKPNGSK W + + +P + K A ++F
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  60   GAYPAISLANARKLREAANELLAQGINPKAQRDSEIKEKELILNNTFEMVTAAWIKLKAS  119
            G YP ISL +ARK   +A+EL+AQGI+P+ +R  + +    I ++TFE VT  W+ +K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  120  EVKPDSLKTISTTLTNHILPRIGKCPITEITAPMAIEALRPIEAKGNHEVIARACQYLNQ  179
            +V PD    I  +L  HI+P+I+  P+  ITAP  IE L+PIEAKG+ E + R  Q LN+
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  180  IMRYATNLGMIHSNPLTGIKGVFMTKKITNNPHVKPEELPQLLMAIATANIKKITRNLIL  239
            +M +ATN G+I++NPLTGIK+ F   K  N + + P ELP+L+ AIA A+IK+ TR L+ 
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  240  WQLHTMTRPAETALAQWNEIDYENNLWIIPGERIKTGMTHQIPLTVQTLAILEACKVISG  299
            WQLHTMTRPAE++ A+W+EI+ E+++W IP+ER+K    H+IPLT Q LA+LE  K ISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  300  NSDYIFPADRNPNAHANKASANMAFKRMGYQGRQTAHGLRGLARTTLSDKGVAYEPSEAC  359
            + D+IFP+DR P+   N  +ANMA+KRMG+ GR  +HGLR+LA TTL+++G   +  E+ 
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA  360

Query  360  LSHKVGNSVSQSYNHSTYLNQRIKIMAWWSNYIEEASYGNISMAGSKGVK  409
            L+H  +N V  +YN++ YL++R  +M WWS+ IEEA+ G++S++G+K +K
Sbjct  361  LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLK  410

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  323 bits (1210),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 177/399 (45%), Positives = 285/399 (72%), Gaps = 2/399 (0%)

Query  1    MARQVIRLTDRKIKSAAPTGKEFTLSDGEGLQLRVRPTGAKSWQFKFSDPVTRKIQKIAL  60
            MA++ ++LTD+ IK++ P  KE+ L DG+GL+LR++P G+K W F++  P   K  ++++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPELSLANARSKTTEYRTLLAQKINPKSFEQSKELEAKRVQTSTFIVVAEQWFERKKE  120
            G YP++SL +AR      + L+AQ I+P+   + ++   K ++  TF  V+ +WF  K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  TVSPAHSYREWRTLEKYIFPHMSKIPVATITAVETIDVLRPLEKEGKYSTVKRICQSLNQ  180
             V+P  +   WR+LE  IFPH+S  PV +ITA E I++L+P+E  G   TVKR+ Q LN+
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMDYSVNHGLIHANPLAKIIKVFRKNTVLHMPTIRPEQLPDFLKRLHSCSTIQTKTKLLI  240
            +M+++ N GLI+ANPL+ I   F+K    +M+++ P +LP+++  + + ++I+  T+ L+
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIAN-ASIKRTTRCLL  239

Query  241  LWQLHTMTRPKEAATTRWIDIDLEKGVWTIPAENMKRRKEHRIPLTSQAINILNQIRLQS  300
             WQLHTMTRP EA+ +RW +I+ E  VWTIPAE MK+R+EHRIPLT Q + +L+ ++  S
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  301  KRCDYVFPGERDINSHVSLFTANAAIKRSLGLKDELVAHGLRAIASTALHEYGFDSLLIE  360
             + D++FP++R  +   +  TAN A+KR +G+ + LV+HGLR++AST+L+E GFD+ L+E
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKR-MGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  361  ACLSHADQNEVRASYNRSDYLEQRKEIMCWWSNYIDEAA  399
            + L+H D+N+VR++YNR+DYLE+RK +MCWWS+ I+EAA
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAA  397

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  321 bits (1203),  Expect = 4e-89, Method: Compositional matrix adjust.
 Identities = 174/333 (53%), Positives = 251/333 (76%), Gaps = 0/333 (0%)

Query  2    MGLGAFPALSLADARGLRADYLSLLANGTDPqvqaevveeqRQIALDSIFSTVAANWFQL  61
            +++G +P +SL +AR        L+A+G DPQ +    ++ ++   +  F  V+ +WF +
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAI  117

Query  62   KSKSVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARTLVEALEPIKARGALETVRRLVQR  121
            K + VTPDYA DIWRSLE ++FP I++ PV+ I A  ++E L PI A+G+LETV+RL QR
Sbjct  118  KQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQR  177

Query  122  INEIMIYAVNTGLIDVNPASGVGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVPTRC  181
            +NE+M +A N GLI+ NP +G+  AF KPKK+NM++L P ELP LM ++  +++   TRC
Sbjct  178  LNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRC  237

Query  182  LIEWKLLTLVRPSEASGARWAEIDLDAKLWTIPAERMKAKREHIVPLSPQALEILDVMKP  241
            L+EW+L T+ RP+EASGARW EI+ + K+WTIPAERMK +REH +PL+ Q L +L+VMKP
Sbjct  238  LLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKP  297

Query  242  ISAHREHVFPSRNDPKQAMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGLNPDVI  301
            IS+HR+ +FPS   PK++ NSQTAN ALKR+G++G+LV+HGLRS+AST++NE G++PD++
Sbjct  298  ISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLV  357

Query  302  EAALAHSDKNEVRKAYNRSTYLTQRKDLMNWWG  334
            E+ALAH D N+VR AYNR+ YL +RK +M WW+
Sbjct  358  ESALAHVDDNQVRSAYNRTDYLERRKPMMCWWS  390

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  309 bits (1160),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 184/399 (47%), Positives = 278/399 (70%), Gaps = 6/399 (1%)

Query  28   MAKIAKKLTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLSKGGKKNWYFRYAVPVTKKRTK  87
            MAK + KLTD EIK++KP EKE NLFDGDGL LRI P    G K+W F Y  P   KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  88   VSLGTYPHLTLAKARALRDEYLSLLANGIDPQVHNTQKANALKDATEHTFQAVAKKWLDE  147
            +S+G YP+++L +AR        L+A+GIDPQ +  ++ +  K+  EHTF+ V+K W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  148  KVKTSGISQDHANDIWRSLERNIFPTLGDTPIKEIRPKMLKQHLDPIEKRGVLETLRRII  207
             +K ++++ D A DIWRSLE +IFP ++D P+K I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  208  SRLNEIFRYAATEELIEFNPADNLAQRFSKPKKQNMPALPPTELPRFLTVLNNASVRMET  267
             RLNE+  +A+   LI+ NP   +   F KPKK+NM+AL P+ELP +++ + NAS++  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  268  RLLIEWQLLTWVRPGEAVRTRWADIDTDNSMWNIPAEFMKMKKPHKVPLSKEALRVLDSM  327
            R L+EWQL T  RP+EA  +RW +I+ ++ +W IPAE MK ++ H++PL+ + L +L+ M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  328  KAISGRREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT  387
            K+ISG+R+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  388  DVLEAALAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYV  426
            D++E+ALAH   +++ +AYNR++YL  R  +M WWS+ +
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  309 bits (1158),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 181/400 (46%), Positives = 284/400 (71%), Gaps = 6/400 (1%)

Query  1    MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLSKGGKKNWYFRYAVPVSKKRTK  60
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   MSLGTYPHLTLARARALRDEYLSLLANGIDPQVHNNDKANALKNATEHTLQAVARKWLDE  120
            +S+G YP+++L +AR        L+A+GIDPQ + + + +  K+  EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHAADIWRSLERNVFPGLGNVPINEIRPKILKQHLDPIEQRGVLETLRRII  180
             +K ++++ D A DIWRSLE ++FP +++ P++ I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRWAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMESLTNASIRLET  240
             RLNE+   A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M +++NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RMLIEWQLLTWVRPGEAVRARWSDIDTTNNIWNIPADFMKMKKPHKVPLSKEALHILELM  300
            R L+EWQL T  RP+EA  ARW +I+  +++W IPA+ MK ++ H++PL+ + L +LE+M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KSISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRA  360
            K+ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F +
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  EVLEAALAHSKKDEIIAAYNRAEYLIERQSLMQWWSDYVQ  400
            +++E+ALAH   +++ +AYNR++YL  R+++M WWS+ ++
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIE  394

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  308 bits (1153),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 186/399 (47%), Positives = 278/399 (70%), Gaps = 6/399 (1%)

Query  1    MAKIAKKLTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTK  60
            MAK + KLTD EIK++KP EKE NLFDGDGL LRI P    G K+W F Y  P   KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   VSLGTYPHLTLAKARALRDEYLSLLTNGIDPQVHNNQKANALKDATEHTFQAVAKKWLDE  120
            +S+G YP+++L +AR        L+++GIDPQ + +++ +  K+  EHTF+ V+K W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHANDIWRSLERNIFSTLGDTPIKEIRPKMLKQHLEPIEKRGVLETLRRII  180
             +K ++++ D A DIWRSLE +IF+ ++D P+K I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLET  240
             RLNE+  +A+   LI+ NP   +   F KPKK+NM+AL P+ELP ++ A+ NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RLLIEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLM  300
            R L+EWQL T  RP+EA  +RW +I+ E  +W IPAE MK ++ H++PL+ + L +L++M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KVISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT  360
            K ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  DVLEAALAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYV  399
            D++E+ALAH   +++ +AYNR++YL  R  +M WWS+ +
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  308 bits (1153),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 186/399 (47%), Positives = 278/399 (70%), Gaps = 6/399 (1%)

Query  1    MAKIAKKLTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTK  60
            MAK + KLTD EIK++KP EKE NLFDGDGL LRI P    G K+W F Y  P   KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   VSLGTYPHLTLAKARALRDEYLSLLTNGIDPQVHNNQKANALKDATEHTFQAVAKKWLDE  120
            +S+G YP+++L +AR        L+++GIDPQ + +++ +  K+  EHTF+ V+K W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHANDIWRSLERNIFSTLGDTPIKEIRPKMLKQHLEPIEKRGVLETLRRII  180
             +K ++++ D A DIWRSLE +IF+ ++D P+K I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLET  240
             RLNE+  +A+   LI+ NP   +   F KPKK+NM+AL P+ELP ++ A+ NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RLLIEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLM  300
            R L+EWQL T  RP+EA  +RW +I+ E  +W IPAE MK ++ H++PL+ + L +L++M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KVISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT  360
            K ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  DVLEAALAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYV  399
            D++E+ALAH   +++ +AYNR++YL  R  +M WWS+ +
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  308 bits (1153),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 186/399 (47%), Positives = 278/399 (70%), Gaps = 6/399 (1%)

Query  1    MAKIAKKLTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTK  60
            MAK + KLTD EIK++KP EKE NLFDGDGL LRI P    G K+W F Y  P   KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   VSLGTYPHLTLAKARALRDEYLSLLTNGIDPQVHNNQKANALKDATEHTFQAVAKKWLDE  120
            +S+G YP+++L +AR        L+++GIDPQ + +++ +  K+  EHTF+ V+K W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHANDIWRSLERNIFSTLGDTPIKEIRPKMLKQHLEPIEKRGVLETLRRII  180
             +K ++++ D A DIWRSLE +IF+ ++D P+K I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLET  240
             RLNE+  +A+   LI+ NP   +   F KPKK+NM+AL P+ELP ++ A+ NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RLLIEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLM  300
            R L+EWQL T  RP+EA  +RW +I+ E  +W IPAE MK ++ H++PL+ + L +L++M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KVISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT  360
            K ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  DVLEAALAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYV  399
            D++E+ALAH   +++ +AYNR++YL  R  +M WWS+ +
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  308 bits (1153),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 186/399 (47%), Positives = 278/399 (70%), Gaps = 6/399 (1%)

Query  1    MAKIAKKLTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTK  60
            MAK + KLTD EIK++KP EKE NLFDGDGL LRI P    G K+W F Y  P   KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   VSLGTYPHLTLAKARALRDEYLSLLTNGIDPQVHNNQKANALKDATEHTFQAVAKKWLDE  120
            +S+G YP+++L +AR        L+++GIDPQ + +++ +  K+  EHTF+ V+K W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHANDIWRSLERNIFSTLGDTPIKEIRPKMLKQHLEPIEKRGVLETLRRII  180
             +K ++++ D A DIWRSLE +IF+ ++D P+K I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLET  240
             RLNE+  +A+   LI+ NP   +   F KPKK+NM+AL P+ELP ++ A+ NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RLLIEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLM  300
            R L+EWQL T  RP+EA  +RW +I+ E  +W IPAE MK ++ H++PL+ + L +L++M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KVISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT  360
            K ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  DVLEAALAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYV  399
            D++E+ALAH   +++ +AYNR++YL  R  +M WWS+ +
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  308 bits (1153),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 186/399 (47%), Positives = 278/399 (70%), Gaps = 6/399 (1%)

Query  1    MAKIAKKLTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTK  60
            MAK + KLTD EIK++KP EKE NLFDGDGL LRI P    G K+W F Y  P   KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   VSLGTYPHLTLAKARALRDEYLSLLTNGIDPQVHNNQKANALKDATEHTFQAVAKKWLDE  120
            +S+G YP+++L +AR        L+++GIDPQ + +++ +  K+  EHTF+ V+K W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHANDIWRSLERNIFSTLGDTPIKEIRPKMLKQHLEPIEKRGVLETLRRII  180
             +K ++++ D A DIWRSLE +IF+ ++D P+K I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLET  240
             RLNE+  +A+   LI+ NP   +   F KPKK+NM+AL P+ELP ++ A+ NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RLLIEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLM  300
            R L+EWQL T  RP+EA  +RW +I+ E  +W IPAE MK ++ H++PL+ + L +L++M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KVISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT  360
            K ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  DVLEAALAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYV  399
            D++E+ALAH   +++ +AYNR++YL  R  +M WWS+ +
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  307 bits (1150),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 186/399 (47%), Positives = 278/399 (70%), Gaps = 6/399 (1%)

Query  28   MAKIAKKLTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTK  87
            MAK + KLTD EIK++KP EKE NLFDGDGL LRI P    G K+W F Y  P   KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  88   VSLGTYPHLTLAKARALRDEYLSLLTNGIDPQVHNNQKANALKDATEHTFQAVAKKWLDE  147
            +S+G YP+++L +AR        L+++GIDPQ + +++ +  K+  EHTF+ V+K W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  148  KVKTSGISQDHANDIWRSLERNIFSTLGDTPIKEIRPKMLKQHLEPIEKRGVLETLRRII  207
             +K ++++ D A DIWRSLE +IF+ ++D P+K I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  208  SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLET  267
             RLNE+  +A+   LI+ NP   +   F KPKK+NM+AL P+ELP ++ A+ NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  268  RLLIEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLM  327
            R L+EWQL T  RP+EA  +RW +I+ E  +W IPAE MK ++ H++PL+ + L +L++M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  328  KVISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT  387
            K ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  388  DVLEAALAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYV  426
            D++E+ALAH   +++ +AYNR++YL  R  +M WWS+ +
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  306 bits (1145),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 189/400 (48%), Positives = 277/400 (70%), Gaps = 6/400 (1%)

Query  1    MAKLAKKLTDTEIKNTKPTEKEINLFDGDGLMLRIAPLSKGGKKKWYFRYPVPVTKKRTK  60
            MAK + KLTD EIK +KP EKE NLFDGDGL LRI P    G K+W F Y  P   KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   ISLGTYPHLTLARARALRDEYLSLLANGIDPQIHNSDKANALKDATEHTLQAVARKWLDE  120
            +S+G YP+++L +AR        L+A+GIDPQ +   + +  K+  EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTTGISKDHAEDIWRSLERNIFPVMGNVPIKEIRPKMLKQHLDPIEQRGVLETLRRII  180
             +K  +++ D A DIWRSLE +IFP +++ P+K I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMAALANASIRLET  240
             RLNE+  +A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M+A+ANASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RMLIEWQLLTWVRPGEAVRARWADIDTENKIWNIPPEFMKMKRPHKVPLSKEALRILENM  300
            R L+EWQL T  RP+EA  ARW +I+ E+K+W IP+E MK +R H++PL+ + L +LE M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  QPISSHREWIFPSIKTPLTHMHEQTANAALIRMGLGGELVAHGMRSIARTAAEECGKFRT  360
            +PIS+HR+ IFPS ++P    + QTAN AL RMG++G LV+HG+RS+A T+ +E G F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  EVLESALAHTKSTEIIAAYNRAEYLVERAGLMQWWGDYIQ  400
            +++ESALAH    ++ +AYNR++YL  R  +M WW++ I+
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIE  394

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  306 bits (1147),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 187/411 (46%), Positives = 284/411 (70%), Gaps = 10/411 (2%)

Query  19   MAKLAKKLTDTEIKSAKPADKEINLFDGDGLILRIAPLSRGGKKNWYFRYAVPVTKKRTK  78
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P   KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  79   VSLGTYPHLTLARAR--VLRDEYLSLLANGIDPQVHNNDKANALKDATEHTLQAVARKWL  136
            +S+G YP+++L +AR  +L      L+A+GIDPQ + + + +  K+  EHT++ V++ W+
Sbjct  58   LSFGMYPDISLLQARKSLLSAK--ELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWF  115

Query  137  DEKVKTSGISQDHANDIWRSLERNIFPGLGNVPIKEIRPKLLKQHLDPIEQRGVLETLRR  196
               +K ++++ D A DIWRSLE +IFP +++ P+K I +  + + L PIE +G LET++R
Sbjct  116  A--IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKR  173

Query  197  IISRLNEIFRWAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMVALANASIRL  256
            +  RLNE+   A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M A+ANASI+ 
Sbjct  174  LTQRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKR  233

Query  257  ETRMLIEWQLLTWVRPGEAVRSRWVDIDTENKIWNIPPEFMKMKRPHKVPLSKEALRILE  316
             TR L+EWQL T  RP+EA  +RW +I+ E+K+W IP+E MK +R H++PL+ + L +LE
Sbjct  234  TTRCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLE  293

Query  317  NMQPISSHREWVFPSIKTPLTHMHEQTANAALIRMGLGGELVAHGMRSIARTAAEESGKF  376
             M+PIS+HR+ +FPS ++P    + QTAN AL RMG++G LV+HG+RS+A T+ +E G F
Sbjct  294  VMKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-F  352

Query  377  RTEVLESALAHTKSTEIIAAYNRAEYLVERAGLMQWWGDYIQAQKHKAIAA  427
              +++ESALAH    ++ +AYNR++YL  R  +M WW++ I+   + +++ 
Sbjct  353  DPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSV  403

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  305 bits (1142),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 182/400 (46%), Positives = 281/400 (71%), Gaps = 6/400 (1%)

Query  15   MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLSKGGKKNWYFRYAVPVSKKRTK  74
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  75   MSLGTYPHLTLARARALRDEYLSLLANGIDPQVHNNDKANALKNATEHTLQTVARKWLDE  134
            +S+G YP+++L +AR        L+A+GIDPQ + + + +  K+  EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  135  KVKTSGISQDHAEDIWRSLERNIFPGLGNVPVNEIRPKLLKQHLDPIEQRGVLETLRRII  194
             +K ++++ D A DIWRSLE +IFP +++ PV+ I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  195  SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLET  254
             RLNE+  +A+   LI+ NP   +   F KPKK+NM+AL P+ELP ++ A+ NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  255  RLLIEWQLLTWVRPGEAVCTRWTDIDTDNSMWNIPAEFMKMKKPHKVPLSKEALRVLNSM  314
            R L+EWQL T  RP+EA  +RW +I+ ++ +W IPAE MK ++ H++PL+ + L +L+ M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  315  KAISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT  374
            K+ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  375  EVLEAALAHSKKDEIIAAYNRAEYLTERVALMQWWSDYVQ  414
            +++E+ALAH   +++ +AYNR++YL  R ++M WWS+ ++
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIE  394

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  305 bits (1142),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 180/407 (45%), Positives = 284/407 (70%), Gaps = 6/407 (1%)

Query  1    MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLAKGGKKNWYFRYAVPVSKKRTK  60
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   MSLGTYPHLTLARARALRDEYLSFLANGVDPQIHNNDKAKALKSATEHTLQAVARKWLDE  120
            +S+G YP+++L +AR        ++A+G+DPQ + + + +  K   EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHAADIWRSLERNVFPGLGNVPINEIRPKLLKQHLDPIEQRGVLETLRRII  180
             +K ++++ D A DIWRSLE ++FP +++ P++ I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRWAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMESLTNASIRLET  240
             RLNE+   A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M +++NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RMLIEWQLLTWVRPGEAVRARWSDIDTTNSIWNIPADFMKMKKLHKVPLSKEALRILELM  300
            R L+EWQL T  RP+EA  ARW +I+  + +W IPA+ MK ++ H++PL+ + L +LE+M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KSISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRA  360
            K+ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F +
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  EVLEAALAHSKKDEIIAAYNRAEYLIERQSLMQWWSDYVQAQRSNAL  407
            +++E+ALAH   +++ +AYNR++YL  R+++M WWS+ ++     +L
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  305 bits (1142),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 180/407 (45%), Positives = 284/407 (70%), Gaps = 6/407 (1%)

Query  1    MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLAKGGKKNWYFRYAVPVSKKRTK  60
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   MSLGTYPHLTLARARALRDEYLSFLANGVDPQIHNNDKAKALKSATEHTLQAVARKWLDE  120
            +S+G YP+++L +AR        ++A+G+DPQ + + + +  K   EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHAADIWRSLERNVFPGLGNVPINEIRPKLLKQHLDPIEQRGVLETLRRII  180
             +K ++++ D A DIWRSLE ++FP +++ P++ I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRWAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMESLTNASIRLET  240
             RLNE+   A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M +++NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RMLIEWQLLTWVRPGEAVRARWSDIDTTNSIWNIPADFMKMKKLHKVPLSKEALRILELM  300
            R L+EWQL T  RP+EA  ARW +I+  + +W IPA+ MK ++ H++PL+ + L +LE+M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KSISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRA  360
            K+ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F +
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  EVLEAALAHSKKDEIIAAYNRAEYLIERQSLMQWWSDYVQAQRSNAL  407
            +++E+ALAH   +++ +AYNR++YL  R+++M WWS+ ++     +L
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  305 bits (1143),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 180/407 (45%), Positives = 284/407 (70%), Gaps = 6/407 (1%)

Query  15   MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLAKGGKKNWYFRYAVPVSKKRTK  74
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  75   MSLGTYPHLTLARARALRDEYLSFLANGVDPQIHNNDKAKALKSATEHTLQAVARKWLDE  134
            +S+G YP+++L +AR        ++A+G+DPQ + + + +  K   EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  135  KVKTSGISQDHAADIWRSLERNVFPGLGNVPINEIRPKLLKQHLDPIEQRGVLETLRRII  194
             +K ++++ D A DIWRSLE ++FP +++ P++ I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  195  SRLNEIFRWAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMESLTNASIRLET  254
             RLNE+   A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M +++NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  255  RMLIEWQLLTWVRPGEAVRARWSDIDTTNSIWNIPADFMKMKKLHKVPLSKEALRILELM  314
            R L+EWQL T  RP+EA  ARW +I+  + +W IPA+ MK ++ H++PL+ + L +LE+M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  315  KSISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRA  374
            K+ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F +
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  375  EVLEAALAHSKKDEIIAAYNRAEYLIERQSLMQWWSDYVQAQRSNAL  421
            +++E+ALAH   +++ +AYNR++YL  R+++M WWS+ ++     +L
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  305 bits (1142),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 180/407 (45%), Positives = 284/407 (70%), Gaps = 6/407 (1%)

Query  1    MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLAKGGKKNWYFRYAVPVSKKRTK  60
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   MSLGTYPHLTLARARALRDEYLSFLANGVDPQIHNNDKAKALKSATEHTLQAVARKWLDE  120
            +S+G YP+++L +AR        ++A+G+DPQ + + + +  K   EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHAADIWRSLERNVFPGLGNVPINEIRPKLLKQHLDPIEQRGVLETLRRII  180
             +K ++++ D A DIWRSLE ++FP +++ P++ I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRWAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMESLTNASIRLET  240
             RLNE+   A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M +++NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RMLIEWQLLTWVRPGEAVRARWSDIDTTNSIWNIPADFMKMKKLHKVPLSKEALRILELM  300
            R L+EWQL T  RP+EA  ARW +I+  + +W IPA+ MK ++ H++PL+ + L +LE+M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KSISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRA  360
            K+ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F +
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  EVLEAALAHSKKDEIIAAYNRAEYLIERQSLMQWWSDYVQAQRSNAL  407
            +++E+ALAH   +++ +AYNR++YL  R+++M WWS+ ++     +L
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  305 bits (1142),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 180/407 (45%), Positives = 284/407 (70%), Gaps = 6/407 (1%)

Query  1    MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLAKGGKKNWYFRYAVPVSKKRTK  60
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   MSLGTYPHLTLARARALRDEYLSFLANGVDPQIHNNDKAKALKSATEHTLQAVARKWLDE  120
            +S+G YP+++L +AR        ++A+G+DPQ + + + +  K   EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHAADIWRSLERNVFPGLGNVPINEIRPKLLKQHLDPIEQRGVLETLRRII  180
             +K ++++ D A DIWRSLE ++FP +++ P++ I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRWAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMESLTNASIRLET  240
             RLNE+   A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M +++NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RMLIEWQLLTWVRPGEAVRARWSDIDTTNSIWNIPADFMKMKKLHKVPLSKEALRILELM  300
            R L+EWQL T  RP+EA  ARW +I+  + +W IPA+ MK ++ H++PL+ + L +LE+M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KSISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRA  360
            K+ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F +
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  EVLEAALAHSKKDEIIAAYNRAEYLIERQSLMQWWSDYVQAQRSNAL  407
            +++E+ALAH   +++ +AYNR++YL  R+++M WWS+ ++     +L
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  305 bits (1142),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 180/407 (45%), Positives = 284/407 (70%), Gaps = 6/407 (1%)

Query  1    MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLAKGGKKNWYFRYAVPVSKKRTK  60
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   MSLGTYPHLTLARARALRDEYLSFLANGVDPQIHNNDKAKALKSATEHTLQAVARKWLDE  120
            +S+G YP+++L +AR        ++A+G+DPQ + + + +  K   EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHAADIWRSLERNVFPGLGNVPINEIRPKLLKQHLDPIEQRGVLETLRRII  180
             +K ++++ D A DIWRSLE ++FP +++ P++ I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRWAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMESLTNASIRLET  240
             RLNE+   A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M +++NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RMLIEWQLLTWVRPGEAVRARWSDIDTTNSIWNIPADFMKMKKLHKVPLSKEALRILELM  300
            R L+EWQL T  RP+EA  ARW +I+  + +W IPA+ MK ++ H++PL+ + L +LE+M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KSISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRA  360
            K+ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F +
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  EVLEAALAHSKKDEIIAAYNRAEYLIERQSLMQWWSDYVQAQRSNAL  407
            +++E+ALAH   +++ +AYNR++YL  R+++M WWS+ ++     +L
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  305 bits (1142),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 180/407 (45%), Positives = 284/407 (70%), Gaps = 6/407 (1%)

Query  1    MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLAKGGKKNWYFRYAVPVSKKRTK  60
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   MSLGTYPHLTLARARALRDEYLSFLANGVDPQIHNNDKAKALKSATEHTLQAVARKWLDE  120
            +S+G YP+++L +AR        ++A+G+DPQ + + + +  K   EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHAADIWRSLERNVFPGLGNVPINEIRPKLLKQHLDPIEQRGVLETLRRII  180
             +K ++++ D A DIWRSLE ++FP +++ P++ I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRWAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMESLTNASIRLET  240
             RLNE+   A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M +++NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RMLIEWQLLTWVRPGEAVRARWSDIDTTNSIWNIPADFMKMKKLHKVPLSKEALRILELM  300
            R L+EWQL T  RP+EA  ARW +I+  + +W IPA+ MK ++ H++PL+ + L +LE+M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KSISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRA  360
            K+ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F +
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  EVLEAALAHSKKDEIIAAYNRAEYLIERQSLMQWWSDYVQAQRSNAL  407
            +++E+ALAH   +++ +AYNR++YL  R+++M WWS+ ++     +L
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  305 bits (1142),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 180/407 (45%), Positives = 284/407 (70%), Gaps = 6/407 (1%)

Query  1    MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLAKGGKKNWYFRYAVPVSKKRTK  60
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   MSLGTYPHLTLARARALRDEYLSFLANGVDPQIHNNDKAKALKSATEHTLQAVARKWLDE  120
            +S+G YP+++L +AR        ++A+G+DPQ + + + +  K   EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHAADIWRSLERNVFPGLGNVPINEIRPKLLKQHLDPIEQRGVLETLRRII  180
             +K ++++ D A DIWRSLE ++FP +++ P++ I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRWAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMESLTNASIRLET  240
             RLNE+   A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M +++NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RMLIEWQLLTWVRPGEAVRARWSDIDTTNSIWNIPADFMKMKKLHKVPLSKEALRILELM  300
            R L+EWQL T  RP+EA  ARW +I+  + +W IPA+ MK ++ H++PL+ + L +LE+M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KSISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRA  360
            K+ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F +
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  EVLEAALAHSKKDEIIAAYNRAEYLIERQSLMQWWSDYVQAQRSNAL  407
            +++E+ALAH   +++ +AYNR++YL  R+++M WWS+ ++     +L
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  304 bits (1141),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 179/407 (44%), Positives = 283/407 (70%), Gaps = 6/407 (1%)

Query  1    MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLSKGGKKNWYFRYAVPVSKKRTK  60
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   MSLGTYPHLTLARARALRDEYLSFLANGVDPQIHNNDKAKALKSATEHTLQAVARKWLDE  120
            +S+G YP+++L +AR        ++A+G+DPQ + + + +  K   EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHAADIWRSLERNVFPGLGNVPINEIRPKLLKQHLDPIKQRGVLETLRRII  180
             +K ++++ D A DIWRSLE ++FP +++ P++ I +  + + L PI  +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRWAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMESLTNASIRLET  240
             RLNE+   A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M +++NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RMLIEWQLLTWVRPGEAVRARWSDIDTTNSIWNIPADFMKMKKPHKVPLSKEALRILELM  300
            R L+EWQL T  RP+EA  ARW +I+  + +W IPA+ MK ++ H++PL+ + L +LE+M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KSISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRA  360
            K+ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F +
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  EVLEAALAHSKKDEIIAAYNRAEYLIERQSLMQWWSDYVQAQRSNAL  407
            +++E+ALAH   +++ +AYNR++YL  R+++M WWS+ ++     +L
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  304 bits (1141),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 179/407 (44%), Positives = 283/407 (70%), Gaps = 6/407 (1%)

Query  1    MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLSKGGKKNWYFRYAVPVSKKRTK  60
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   MSLGTYPHLTLARARALRDEYLSFLANGVDPQIHNNDKAKALKSATEHTLQAVARKWLDE  120
            +S+G YP+++L +AR        ++A+G+DPQ + + + +  K   EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHAADIWRSLERNVFPGLGNVPINEIRPKLLKQHLDPIKQRGVLETLRRII  180
             +K ++++ D A DIWRSLE ++FP +++ P++ I +  + + L PI  +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRWAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMESLTNASIRLET  240
             RLNE+   A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M +++NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RMLIEWQLLTWVRPGEAVRARWSDIDTTNSIWNIPADFMKMKKPHKVPLSKEALRILELM  300
            R L+EWQL T  RP+EA  ARW +I+  + +W IPA+ MK ++ H++PL+ + L +LE+M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KSISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRA  360
            K+ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F +
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  EVLEAALAHSKKDEIIAAYNRAEYLIERQSLMQWWSDYVQAQRSNAL  407
            +++E+ALAH   +++ +AYNR++YL  R+++M WWS+ ++     +L
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  304 bits (1141),  Expect = 6e-84, Method: Compositional matrix adjust.
 Identities = 187/411 (46%), Positives = 286/411 (70%), Gaps = 10/411 (2%)

Query  19   MAKLAKKLTDTEIKSTKPSDKEINLFDGDGLILRIAPLSRGGKKNWYFRYAVPVTKKRTK  78
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P   KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  79   VSLGTYPHLTLARAR--VLRDEYLSLLANDIDPQVHNNDKANALKDATEHTLQAVARKWL  136
            +S+G YP+++L +AR  +L      L+A++IDPQ + + + +  K+  EHT++ V++ W+
Sbjct  58   LSFGMYPDISLLQARKSLLSAK--ELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWF  115

Query  137  DEKVKTSGISKDHAVDIWRSLERNIFPGLGNVPIKEIRPKLLKQHLDPIEQRGVLETLRR  196
               +K ++++ D A+DIWRSLE +IFP +++ P+K I +  + + L PIE +G LET++R
Sbjct  116  A--IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKR  173

Query  197  IISRLNEIFRWAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMAALANASIRL  256
            +  RLNE+   A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M+A+ANASI+ 
Sbjct  174  LTQRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKR  233

Query  257  ETRMLIEWQLLTWVRPGEAVRARWADIDTENKIWNIPPEFMKMKRPHKVPLSKEALRILE  316
             TR L+EWQL T  RP+EA  ARW +I+ E+K+W IP+E MK +R H++PL+ + L +LE
Sbjct  234  TTRCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLE  293

Query  317  NMQPISSHREWVFPSIKTPLTHMHEQTANAALIRMGLGGELVAHGMRSIARTAAEECGKF  376
             M+PIS+HR+ +FPS ++P    + QTAN AL RMG++G LV+HG+RS+A T+ +E G F
Sbjct  294  VMKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-F  352

Query  377  RTEVLESALAHTKSTEIIAAYNRAEYLVERADLMQWWGDYIQAQKHKAIAA  427
              +++ESALAH    ++ +AYNR++YL  R  +M WW++ I+   + +++ 
Sbjct  353  DPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSV  403

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  303 bits (1135),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 182/399 (46%), Positives = 277/399 (70%), Gaps = 6/399 (1%)

Query  15   MAKIAKKLTDTEIKSTKPTDKEINLFDGDGLILRISALAKGGKKNWYFRYAVPVSKKRTK  74
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI +    G K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  75   MSLGTYPHLTLARARALRDEYLSLLANGIDPQVHNNDKANALKNATEHTLQAVARKWLDE  134
            +S+G YP+++L +AR        L+A+GIDPQ + + + +  K+  EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  135  KVKTSGISQDHAEDIWRSLERNIFPGLGNVPINEIRPKLLKQHLDPIEQRGVLETLRRII  194
             +K ++++ D A DIWRSLE +IFP +++ P++ I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  195  SRLNEIFRYATTEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLET  254
             RLNE+  +AT   LI+ NP   +   F KPKK+NM+AL P+ELP ++ A+ NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  255  RLLIEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPSDFMKMKKPHKVPLSKEALRVLESM  314
            R L+EWQL T  RP+EA  +RW +I+ E  +W IP++ MK ++ H++PL+ + L +LE M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  315  KAISGHREWVFPSIKAPLSHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT  374
            K+ISGHR+ +FPS +AP    + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  375  DVLEAALAHSKKDEIIAAYNRAEYLAERVVLMQWWSDYV  413
            D++E+ALAH   +++ +AYNR++YL  R  +M WWS+ +
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  303 bits (1135),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 179/401 (45%), Positives = 278/401 (70%), Gaps = 6/401 (1%)

Query  1    MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLSKGGKKNWYFRYAVPVTKKRTK  60
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P   KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   VSLGTYPHLTLARARALRDEYLSLLANGIDPQIHNNDKANALKNATEHTLQAVARKWLDE  120
            +S+G YP+++L +AR        L+A+GIDPQ + + + +  K+  EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISQDHAEDIWRSLERNIFPGLGNVPINEIRPKLLKQHLDPIEQRGVLETLRRII  180
             +K ++++ D A DIWRSLE +IFP +++ P++ I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLLVLNNASVRLET  240
             RLNE+  +A+   LI+ NP   +   F KPKK+NM+AL P+ELP ++  + NAS++  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RLLIEWQLLTWVRPGEAVRTRWTDIDTDNSMWNIPAEFMKMKKPHKVPLSKEALRVLDSM  300
            R L+EWQL T  RP+EA  +RW +I+ ++ +W IPAE MK ++ H++PL+ + L +L+ M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KAISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT  360
            K+ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  EVLEAALAHSKKDEIIAAYNRAEYLAERVVLMQWWSNYVQA  401
            +++E+ALAH   +++ +AYNR++YL  R  +M WWS+ ++ 
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEE  395

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  299 bits (1121),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 184/403 (46%), Positives = 274/403 (68%), Gaps = 3/403 (0%)

Query  1    MPKVLKSLTNTEIAAAKPQKTEYMLRDGDGLALLIKPSGRKIWYFEYAPPALKKRTKISI  60
            M+K    LT+ EI A+KP+  EY L DGDGL L IKP+G K W F+Y  P+  KR+++S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPVVTLAMARDFRLQYRRLLVQGIDPQAHLEQVAEEQRLQNECTLEKVAEQWLKEKKR  120
            G YP ++L  AR   L  + L+ QGIDPQ +  +  + ++  +E T+E+V+ +W+  K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  121  TSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTLLEEQGILETLRRVISRL  180
             +D++ D A D+WRSLE+H+FP +++ PV  I +  + E L  +E +G LET++R+  RL
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  181  NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCL  240
            NE+  FA +  LI+ NP   + A FKKPKK+NM+AL P+EL  LM A+ NASI++ TRCL
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  241  IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV  300
            +EW+L T  RP+EA +ARW +I+     W IP   MK  R H +PL+ Q L +L++M P+
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  301  SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSIARTAGAGH-FPREVLE  359
            S HR  +FPS R P    + QTAN AL RMGF+G LV+HG+RS+A T+   + F  +++E
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  360  SALAHQKEDEIEAAYNRSDYLEQRRPLMQWWGNYVDAARRQAL  402
            SALAH  ++++ +AYNR+DYLE+R+P+M WW++ ++ A R +L
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  299 bits (1120),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 180/403 (45%), Positives = 274/403 (68%), Gaps = 3/403 (0%)

Query  1    MPKQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSL  60
            M+K+   LT+ EI ++KPR  +Y+L DG+GL L +K +G K W F+YY+P   KR++ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPVVTLAMARETRTKYRRLLWQGIDPRQHLAGIAEEKRLQNECTLEKVAEQWLKEKKR  120
            G YP ++L  AR +    + L+ QGIDP+++     +  +  +E T+E+V+ +W+  K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  121  TSDLSEDHAKDVWRSLEMHVFPSLGSTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRL  180
             +D++ D A D+WRSLE+H+FP ++  PV  I +  + E L P+E +G LET++R+  RL
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  181  NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALPPSELGRLMLALQNASIRKETRCL  240
            NE+  FA +  LI+ NP   + A FKKPKK+NM+AL P+EL  LM A+ NASI++ TRCL
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  241  IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV  300
            +EW+L T  RP+EA +ARW +I+     W IP   MK  R H +PL+ Q L +L++M P+
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  301  SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSIARTAGAGH-FPREVLE  359
            S HR  +FPS R P    + QTAN AL RMGF+G LV+HG+RS+A T+   + F  +++E
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  360  SALAHQKEDEIEAAYNRSDYLEQRRPLMQWWGNYVDAARRQAL  402
            SALAH  ++++ +AYNR+DYLE+R+P+M WW++ ++ A R +L
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  299 bits (1120),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 180/400 (45%), Positives = 278/400 (70%), Gaps = 6/400 (1%)

Query  15   MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLSKGGKKNWYFRYAVPVSKKRTK  74
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  75   MSLGTYPHLTLARARALRDEYLSLLANGIDPQVHNNDKANALKNATEHTLQAVARKWLDE  134
            +S+G YP+++L +AR        L+A+GIDPQ + + + +  K+  EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  135  KVKTSGISQDHAEDIWRSLERNILPGLGNVPINEIRPKLLKQHLDPIEQRGVLETLRRLI  194
             +K ++++ D A DIWRSLE +I+P +++ P++ I +  + + L PIE +G LET++RL 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  195  SRLNEIFRWAATEELIEFNPADNLSQRFSKPKKQNMPALPPSELPRFLAALNNASVRLET  254
             RLNE+   A+   LI+ NP   +   F KPKK+NM+AL P+ELP +++A+ NAS++  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  255  RLLIEWQLLTWVRPGEAVRARWSDIDMDNSMWNIPAEFMKMKKPHKVPLSKESLRILKSM  314
            R L+EWQL T  RP+EA  ARW +I+ ++ +W IPAE MK ++ H++PL+ + L +L  M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  315  ESISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT  374
             +ISGHR+ +FPS +AP +  + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  375  EVLEAALAHSKKDEIIAAYNRAEYISEREKLMQWWSNYIQ  414
            +++E+ALAH   +++ +AYNR++Y+  R  +M WWS+ I+
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIE  394

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  298 bits (1117),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 179/399 (45%), Positives = 273/399 (69%), Gaps = 6/399 (1%)

Query  1    MAKLAKKLTDTEIKSTKPSDKEINLFDGDGLILRIAPLSKGGKKNWYFRYAVPVTKKRTK  60
            MAK + KLTD EIK++KP +KE NLFDGDGL LRI P    G K+W F Y  P   KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRAN  57

Query  61   MSLGTYPHLTLARSRALRDEYLSLLANGIDPQVHNSYKANALKDATEHTLQAVARKWLDE  120
            +S+G YP+++L ++R        L+A+GIDPQ +   + +  K+  EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  121  KVKTSGISKDHAEDIWRSLERNIFPGLGNVPIKEIRPKLLKQHLDPIEQRGVLETLRRII  180
             +K ++++ D A DIWRSLE +IFP +++ P+K I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  SRLNEIFRYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFMASLANASVRLET  240
             RLNE+  +A+   LI+ NP   +   F KPKK+NM+AL P+ELP +M+++ANAS++  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  RMLIEWQLLTWVRPGEAVRVRWVDIDIDNGMWNIPAEFMKMKNPHKVPLSKEAIRILKSM  300
            R L+EWQL T  RP+EA   RW +I+ ++ +W IPAE MK +  H++PL+ + + +L  M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  EPISRHREWIFPSIKAPLSHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRT  360
             PIS HR+ IFPS +AP    + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  361  EVLEAALAHSKKDEIIAAYNRAEYLAERMVLMQWWGDYV  399
            +++E+ALAH   +++ +AYNR++YL  R  +M WW++ +
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  297 bits (1114),  Expect = 7e-82, Method: Compositional matrix adjust.
 Identities = 186/399 (47%), Positives = 276/399 (70%), Gaps = 6/399 (1%)

Query  15   MARQTKKLTDTEIKNTKPADKEINLFDGDGLLLRIAPSSKGGKKNWYLRYPVPVTKKRTK  74
            MA++T KLTD EIK +KP +KE NLFDGDGL LRI P+   G K+W + Y  P   KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPN---GSKQWIFNYYRPTNGKRAN  57

Query  75   MSLGTYPHLSLAKARALRDEYLSLLANGVDPQVHITEKTNALKDATEHTLQAVSRKWLDE  134
            +S+G YP++SL +AR        L+A+G+DPQ +   + +  K+  EHT++ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  135  KIKTSGISLDHAEDIWRSLEKNIFSTLGDVPIKEIRPKMLKQHLDPIEQRGVLETLRRII  194
             IK ++++ D A DIWRSLE +IF+ ++D P+K I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  195  SRLNEIFRYAATEELIEFNPADNLAQRFSKPKKQNMPALPPDELPRFMVALSNASIRLET  254
             RLNE+  +A+   LI+ NP   +   F KPKK+NM+AL P ELP +M A++NASI+  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  255  RMLIEWQLLTWVRPGEAVRARWCDIDEESRFWNIPSEFMKMKRPHKVPLSKEALRILENM  314
            R L+EWQL T  RP+EA  ARW +I+ E + W IP+E MK +R H++PL+ + L +LE M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  315  RPISGHREWVFPSIKAPLSHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEEYGKFRT  374
            +PISGHR+ +FPS +AP    + QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  375  EVLESALAHTKKDEIIAAYNRSEYLVEREELMKWWGDYV  413
            +++ESALAH   +++ +AYNR++YL  R  +M WW++ +
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHI  393

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  294 bits (1103),  Expect = 5e-81, Method: Compositional matrix adjust.
 Identities = 178/401 (45%), Positives = 275/401 (69%), Gaps = 6/401 (1%)

Query  15   MAKIAKKLTDTEIKSIKPADKEINLFDGDGLILRIAPLAKGWKKNWYFRYAVPVSKKRTK  74
            MAK + KLTD EIK+ KP +KE NLFDGDGL LRI P +    K+W F Y  P + KR++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGS---KQWIFNYYRPTNGKRAN  57

Query  75   MSLGTYPHLTLARARALRDEYLSLLANGIDPQVHNSDKANALKNATEHTFQAVARKWLDD  134
            +S+G YP+++L +AR        L+A+GIDPQ +   + +  K+  EHTF+ V++ W+  
Sbjct  58   LSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA-  116

Query  135  KVKTSGISKDHAEDIWRSLERNIFPGLGNVPINEIRPKLLKQHLDPIEQRGVLETLRRII  194
             +K ++++ D A DIWRSLE +IFP +++ P++ I +  + + L PIE +G LET++R+ 
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  195  SRLNEIFRYAATEELIEFNPADNLAQRFSKTKKQNMPALPPSELPRFLMVLNNASVRLET  254
             RLNE+  +A+   LI+ NP   +   F K KK+NM+AL P+ELP ++  + NAS++  T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  255  RLLIEWQLLTWVRPGEAVRARWADIDTDNSMWNIPAEFMKMKKPHKVSLSKEALRVLETM  314
            R L+EWQL T  RP+EA  ARW +I+ ++ +W IPAE MK ++ H+++L+ + L +LE M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  315  KAISGHREWVFPSIKAPLNHMHEQTANAAIIRMDFGGELVAHGMRSIARTAAEESDKFRT  374
            K+ISGHR+ +FPS +AP +  + QTAN A+ RM+F+G LV+HG+RS+A T+ +E + F  
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDP  354

Query  375  DVLEAALAHSKKDEIIAAYNRAEYLAERVVLMQWWSGYVQA  415
            D++E+ALAH   +++ +AYNR++YL  R  +M WWS  ++ 
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEE  395

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  292 bits (1094),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 167/413 (41%), Positives = 282/413 (69%), Gaps = 7/413 (1%)

Query  1    MARQIIQLTNTKILNAKPKDKDYTLSDGQGLYLLVKSNGSKLWRFNYYDLLK-KRKLISL  59
            MA++ ++LT+  I  +KP++K+Y L DG+GL L +K+NGSK W FNYY   + KR  +S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  60   GSYPETSLLDARTKRDEYRALLAKDIEPQDYIFKQKEQAIFNQCN--TLIGVAKDWREMK  117
            G YP+ SLL+AR      + L+A++I+PQD   ++++Q + ++ +  T+  V+KDW  +K
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDD--RKRQQQVHKEIHEHTFENVTKDWFAIK  118

Query  118  SSKVEADTMKDQWRLLELHLFPHLGNMPISDITAPFTRMKLQKLADDKKFEMLKKVIRGL  177
             + V +D   D WR LELH+FPH+++ P+  ITAP     L+ +     +E +K++ + L
Sbjct  119  QNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  178  NEIMRFAVNAGLIQFNPTANLQELFPSGEVQHRPSIHPDKLPKFLESVNKANIQLQTRCL  237
            NE+M FA N GLIQ NP + ++  F     ++ +++ P  LP ++ ++ +A+I+  TRCL
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  238  LEWQLLTMVRPSEAAGTMWREIDFENKTWLIPKDRMKGKKRSHLVPLSQQAINILNIMRP  297
            LEWQL TM RP+EA+G+ W EI+ E+K W IP +RMK K+R H +PL++Q + +L++M+P
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMK-KRREHRIPLTEQMLALLEVMKP  297

Query  298  ITGNCDFVFPKNGDLTTNMSSETINKALRKMGYQGILCAHGFRSIASTALNENEFNVEII  357
            I+G+ DF+FP +       +S+T N AL++MG+ G L +HG+RS+AST+LNE+ F+ +++
Sbjct  298  ISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLV  357

Query  358  EALLSHVKGDKVRTAYDRSTYEKQKRQYIEWWGNFVEKSSVRPCLLGAGGLDL  410
            E+ L+HV +++VR+AY+R+ Y  +++  + WW++ +E ++ R  L  +G  +L
Sbjct  358  ESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAA-RGSLSVTGTKQL  409

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  291 bits (1091),  Expect = 4e-80, Method: Compositional matrix adjust.
 Identities = 174/406 (43%), Positives = 275/406 (68%), Gaps = 4/406 (0%)

Query  1    MARTITPLNSTKIDKAKPQEKEFTLSDGKGLYLLVKPNGAKLWRFNYYKPFTQPKKRALI  60
            MA+    L    I  +KP+EKE+ L DG GL L +KPNG+K W FNYY+P     KRA +
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNG--KRANL  58

Query  61   GVGKYPDISLQQARAIREEYLSLLAQNIDPATHRQQQEQAKQNELNNTYEAVAWAWLEYR  120
            + G YPDISL QAR        L+AQ IDP  +R++Q+Q  ++  ++T+E V+  W+  +
Sbjct  59   SFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIK  118

Query  121  KTKKNFSDNYQKDVISLINRCLLPHFGHLPISQITAPMALKAFKQYQDEGHLEKLKRTIQ  180
            +   + + +Y  D+   ++  ++PH+++ P+  ITAP  +  +K  +  G LE +KR  Q
Sbjct  119  QN--DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQ  176

Query  181  KHNEIMTYALHRDLISFNPTANIAKEFDSPTVEHFKTLKPEDLSEFMSTLQNAQIHLQTR  240
            + NE+M +A + +LI  NP + I   F  P  E+  +L P +L+E+MS++ NA I   TR
Sbjct  177  RLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTR  236

Query  241  YLILWQLLTMTRPNEAATAKWADIDEKNRIWTIPAEQMKRGIEHRITLSRQALALLGQIK  300
             L+ WQL TMTRP EA+ A+W +I+  +++WTIPAE+MK+  EHRI L+ Q LALL  +K
Sbjct  237  CLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMK  296

Query  301  KLSGGKTYLFPSVKNPQSHVNTQTANAAIKRMGYAGKLVAHGLRSIASTYLNDQGFNSDL  360
             +SG + ++FPS + P+   N+QTAN A+KRMG+AG+LV+HGLRS+AST LN+QGF++DL
Sbjct  297  PISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDL  356

Query  361  IEVALSHLNSDRVKTAYDRGEKLEQRFKLLQAWADFVEQSSQGTLP  406
            +E AL+H++ ++V++AY+R + LE+R  ++  W++ +E++++G+L+
Sbjct  357  VESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLS  402

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  290 bits (1084),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 175/406 (44%), Positives = 274/406 (68%), Gaps = 4/406 (0%)

Query  1    MARTITPLNSTKIDKAKPQEKEFTLSDGKGLYLLVKPNGAKLWRFNYYKPFTQPKKRALI  60
            MA+    L    I  +KP+EKE+ L DG GL L +KPNG+K W FNYY+P     KRA +
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNG--KRANL  58

Query  61   GVGKYPDISLQQARAIREEYLSLLAQNIDPAIYRQQQEQAKQNELNNTYEAVAWAWLEYR  120
            + G YPDISL QAR        L+AQ IDP   R++Q+Q  ++  ++T+E V+  W+  +
Sbjct  59   SFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIK  118

Query  121  KTKKNFSDNYQKDVISLINRCLLPHFGHLPISQITAPMALKAFKQYQDEGHLEKLKRTIQ  180
            +   + + +Y  D+   ++  ++PH+++ P+  ITAP  +  +K  +  G LE +KR  Q
Sbjct  119  QN--DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQ  176

Query  181  KHNEIMTYALHRDLISFNPTANIAKEFDSPTVEHFKTLKPEDLSEFMSTLQNAQIHLQTR  240
            + NE+M +A + +LI  NP + I   F  P  E+  +L P +L+E+MS++ NA I   TR
Sbjct  177  RLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTR  236

Query  241  YLILWQLLTMTRPNEAATAKWADIDEKNRIWTIPAEQMKRGIEHRITLSRQALALLGQIK  300
             L+ WQL TMTRP EA+ A+W +I+  +++WTIPAE+MK+  EHRI L+ Q LALL  +K
Sbjct  237  CLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMK  296

Query  301  KLSGGKTYLFPSVKNPQSHVNTQTANAAIKRMGYAGKLVAHGLRSIASTYLNDQGFNSDL  360
             +SG + ++FPS + P+   N+QTAN A+KRMG+AG+LV+HGLRS+AST LN+QGF++DL
Sbjct  297  PISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDL  356

Query  361  IEVALSHLNSDRVKTAYDRGEKLEQRFKLLQAWADFVEQSAQGTLP  406
            +E AL+H++ ++V++AY+R + LE+R  ++  W++ +E++A+G+L+
Sbjct  357  VESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLS  402

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  283 bits (1058),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 169/408 (42%), Positives = 281/408 (69%), Gaps = 6/408 (1%)

Query  1    MARTTKPLTNTEIANAKPKDKKYPLTDGGGLFLLVKPNGAKLWRFNYYKPYTKNRTEIGL  60
            MA+ T  LT+ EI  +KP++K Y L DG+GL L +KPNG+K W FNYY+P   +R+++++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GSYPDVNLARAREIREEYRSLLSQNIDPHTHRQAIEQAKQTEIYNTFENVAWAWYEWRQT  120
            G YPD++L +AR      + L++Q IDP+ +R+  +Q  +    +TFENV+  W+     
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA--IK  118

Query  121  RANFSQGYARDVKSLIERILLPAFGKYPITQISAPMALKAFKPLQEKGTLETLKRAIQKM  180
            + + + +YA D+   +E  ++P ++  P+  I+AP  +  +KP++ KG+LET+KR  Q++
Sbjct  119  QNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  181  NEIMTFALHREIIQHNPLINISKEFDSPTVEHFKTIKPEDLSEFLFTLNTAQIQLQTRYL  240
            NE+M FA +  +IQ NPL  I   F  P  E+  ++ P +L+E++ ++  A I+  TR L
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  241  ILWQLLTMTRPNEAATAKYEDIDEKEKIWTIYINKGIKQDDKGREHKITLSRQALALLRE  300
            + WQL TMTRP EA+ A+ ++I+  EK+WTI  ++  K+    REH+I L+ Q LALL  
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKR----REHRIPLTEQMLALLEV  294

Query  301  IKKFSGGKVYLFPSHKNPqthtntqtanaaIKRMGYKGKLVAHGLRSIASTYLNEKGYNP  360
            +K +SG + ++FPS++ P+   N+QTAN A+KRMG+ G+LV+HGLRS+AST LNE+G++P
Sbjct  295  MKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDP  354

Query  361  ELIEVALSHINQDRIRMAYNRADYIKQRFEILQAWADFIDECSQGALP  408
            +L+E AL+H++++++R AYNR+DY+ +R  ++  W++ I+E ++G+L+
Sbjct  355  DLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLS  402

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  281 bits (1053),  Expect = 4e-77, Method: Compositional matrix adjust.
 Identities = 164/398 (42%), Positives = 260/398 (66%), Gaps = 8/398 (2%)

Query  4    RVTDVTIKNLDVRNKEYTFTVEENLQLRVRPKRSIKGSGTKAWQFKYRHPVTKKVTKISM  63
            ++TD  IK    R+KEY +   + L+LR++P      +G+K W F+Y +P   K +++S 
Sbjct  7    KLTDKEIKASKPREKEYNLFDGDGLRLRIKP------NGSKQWIFNYYRPTNGKRANLSF  60

Query  64   GTYPSLGLATAKMEAADYRKQLATGIDPKQAKEESRIENLRAHNDSFLAISIEWFEKKSK  123
            G YP ++L  A+      +  +A GIDP++ +   +  +   H+++F  ++ +WF  K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  124  TVSEFHAKRIWRSLEKYVFEHIGSLPVKNITRRIAVDILRPLEKAGKLSTIKRICQSLNQ  183
             V+   A  IWRSLE  +F HI+  PVK IT    +++L+P+E  G L T+KR+ Q LN+
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  184  IMEYAVANDSIAANPLTKMINAFERHKVEHMPTIRPellnellsrlsnnDKIQNKTKLLL  243
            +M++A   + I ANPLT +  AF + K E+M+++ P      L     N  I+  T+ LL
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTP-AELPELMSAIANASIKRTTRCLL  239

Query  244  LWQLHTIARPKEAARTRWEDIDFDKCCWTIPAKEMKRKREHRIPLTSQALLILEELKPYS  303
             WQLHT++RP EA+ +RW++I+ +   WTIPA  MK++REHRIPLT Q L +LE +KP S
Sbjct  240  EWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPIS  299

Query  304  SHKEFVFPGERNPDSHASVYTANAALKRSLSFKGELVAHGLRAIASTALHEHGFNTLHIE  363
            +H++F+FP++R P    +  TAN ALKR ++F G LV+HGLR++AST+L+E+GF+   +E
Sbjct  300  GHRDFIFPSDRAPKKPCNSQTANMALKR-MGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  364  ACLSHSDQNETRASYNRSDFFEQRKEIMRWWSEYVTEA  401
            + L+H D+N+ R++YNR+D++E+RK +M WWSE + EA
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEA  396

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  280 bits (1047),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 172/398 (44%), Positives = 265/398 (67%), Gaps = 4/398 (1%)

Query  1    MARTTKPLTNTEVDKAKPQDKEYNLSDGNGLYLRIKPNGAKNWIFNYFKPNAKNRSNLGL  60
            MA+ T  LT+ E+  +KP++KEYNL DG+GL LRIKPNG+K+WIFNY++P   +R+NL++
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GVYPEISLKQAREIRNEYNQLLAKGIDPKIYRQQLEEQKNFEKSNTFKNLSEKWREKKRD  120
            G+YP+ISL QAR      ++L+A+GIDP+  R++ ++  +    +TF N++  W   K++
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  EVQESTINKEYRRLELYALPYLGHLSLNEISAPVVVTALQPLYKKNLNDTLHRLIRMINE  180
            +V         R LEL  +P +++ +++ I+AP ++  L+P+  K   +T+ RL + +NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMNFAVNGGLVKYNPCSTIGEMFAKKQKENNPTIPPDKLPELMAKIANAHIEPQTRYLIQ  240
            +MNFA N GL++ NP + I   F K +KEN +++ P  LPELM+ IANA I   TR L++
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  WQLLTMVRPREAVSVEWAEIDLEKRLWTIPPEKMKGTRKGRLQHIVPLSTQAIRVLERLK  300
            WQL TM RP EA +  W EI+ E ++WTIP+E+MK  R    +H +PL+ Q + +LE +K
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRR----EHRIPLTEQMLALLEVMK  296

Query  301  PITGHLKHVFPHYSKPAEHMNSSTANVALKRMGYKDVLTAHGMRSLARTYLADNDVTHEV  360
            PI+GH   +FP    P    NS TAN+ALKRMG+ + L +HG+RSLA T L +++   ++
Sbjct  297  PISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDL  356

Query  361  AEACLAHSVGNVVSQAYNKSTYLEQRIGVMQMWGDYVE  398
             E+ LAH  +N V  AYN++ YLE+R  +M  W++ +E
Sbjct  357  VESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIE  394

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  276 bits (1032),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 166/410 (41%), Positives = 276/410 (68%), Gaps = 8/410 (1%)

Query  1    MTRPTNLLNNRKIDAAKPKADEQGNLTDNKLQDGNGLYLLVKATGSKLWRFNYYKPLTKK  60
            M++ T  L ++ I A+KP+  E       +L DG+GL L +K+ GSK W FNYY+P   K
Sbjct  1    MAKNTVKLTDKEIKASKPREKE------YNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGK  54

Query  61   RTEMSLGAYPDVSLAQARELRNQYRSLLAQDIDPNEHRQNVKQAKLDEINNTYEAVAWAW  120
            R+++S+G YPD+SL QAR      + L+AQ+IDP+++R+  +Q   +  ++T+E V+  W
Sbjct  55   RANLSFGMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDW  114

Query  121  FEYRQTKKNFSEGYKKDVASLIKRCLLPHFGSLPISQITAPMALKAFKQYQDEGTLEKLK  180
            F  +Q  ++ + +Y  D+   +   ++PH++  P+  ITAP  +  +K  +  G+LE +K
Sbjct  115  FAIKQ--NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVK  172

Query  181  RTIQKHNEIMNFALHRDLISFNPTANISKEFDSPTVEHFKTIQPEDLPEFMYTLNNAQIN  240
            R  Q+ NE+MNFA + +LI  NP + I   F  P  E+  ++ P +LPE+M ++ NA I+
Sbjct  173  RLTQRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIK  232

Query  241  LRTRYLILWQLLTMTRPNEAAKARYEDIDEKSRLWTIPAENMKRGIAHKITLSRQAMALL  300
              TR L+ WQL TMTRP EA+ AR ++I+   ++WTIPAE MK+   H+I L+ Q +ALL
Sbjct  233  RTTRCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALL  292

Query  301  REIKKLSGGKTYLFPNVKYPQTHVNTQTANAAIKRMGYQGKLVAHGLRSIASTYLNEKGY  360
              +K +SG + ++FP+ + P+   N+QTAN A+KRMG+ G+LV+HGLRS+AST LNE+G+
Sbjct  293  EVMKPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGF  352

Query  361  NSELIEVALSHINSDRIKAAYDRGERLEQRFKLLQVWADFVEECSQGALP  410
            +++L+E AL+H++ +++++AY+R + LE+R  ++  W++ +EE ++G+L+
Sbjct  353  DPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLS  402

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  271 bits (1015),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 166/378 (44%), Positives = 253/378 (67%), Gaps = 6/378 (1%)

Query  2    NLFDGDGLFLRISPTVKGGKKNWYFRYAVPVTKKRTKISLGTYPHLTLAQARSLRDQYLA  61
            NLFDGDGL LRI P    G K+W F Y  P   KR+++S+G YP+++L QAR        
Sbjct  24   NLFDGDGLRLRIKP---NGSKQWIFNYYRPTNGKRANLSFGMYPDISLLQARKSLLSAKE  80

Query  62   LLVQQNDPQTHKADKANALKAATEHTLQVVAKKWLEEKKRTSGISEDHAADIWRSLERNV  121
            L+ Q  DPQ ++  + +  K   EHT++ V+K W+  K+  ++++ D A DIWRSLE ++
Sbjct  81   LIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ--NDVTPDYALDIWRSLELHI  138

Query  122  FPGLGNIPIKEIRPKLLKQQLDPIEQRGVLETLRRIISRLNEIFRWAATEELIEFNPADN  181
            FP +++ P+K I +  + + L PIE +G LET++R+  RLNE+   A+   LI+ NP   
Sbjct  139  FPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATNCGLIQANPLTG  198

Query  182  LAQRFRKPKKQNMPALPPYELPRFLATLNNASERMETRLLVEWQLLTWVRPSEAVKARWC  241
            +   F+KPKK+NM+AL P ELP +++++ NAS +  TR L+EWQL T  RP+EA  ARW 
Sbjct  199  IKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLEWQLHTMTRPAEASGARWD  258

Query  242  DNDTVNGIWTIPADFMKMRKIHKVPLNREALRILEAMKPVSGHREWIFPSIKVPLSHMHE  301
            + +  + +WTIPA+ MK R+ H++PL  + L +LE MKP+SGHR+ IFPS + P    + 
Sbjct  259  EINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIFPSDRAPKKPCNS  318

Query  302  QTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRSEVLEAALAHSKKDEIVAAYNRAE  361
            QTAN A+ RMGF+G LV+HG+RS+A T+ +E G F ++++E+ALAH   +++ +AYNR++
Sbjct  319  QTANMALKRMGFAGRLVSHGLRSLASTTLNEQG-FDPDLVESALAHVDDNQVRSAYNRTD  377

Query  362  YLAERVTLMQWWGDYVHA  379
            YL  R  +M WW++ ++ 
Sbjct  378  YLERRKPMMCWWSEHIEE  395

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  269 bits (1007),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 165/403 (41%), Positives = 268/403 (67%), Gaps = 2/403 (0%)

Query  1    MAKKVKPLVDTEIKKAKASNKPYTLTDGYGLFLIISPTGSKSWRFNYYRPITKKRAKISL  60
            MAK+   L D EIK +K+ +K Y L DG GL L I P GSK W FNYYRP   KRA++S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GLYPAITLSKARELREQYRQLLANKIDPQEYIKQHELLQLQRQNNTFFAISTQWKQKKVS  120
            G+YP I+L +AR      ++L+A+ IDPQ+  K+++ ++ + +++TF  ++ +W   K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  EIKSVTLKSRWRTLEKYAFPYLGDNPIAEITPQQLHDTVIPLFERGVSHTGKLVIALVNE  180
            ++ +      WR+LE   FP ++D+P+  IT+ ++ + + P+  +G  +T K +   +NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMNFAVNKGIIEFNKCINVSKAFNVNRTTHHPTIRPEKLPEFMSALRHSHIDLMVKYLIE  240
            +MNFA N G+I+ N    +  AF+  +  + +++ P  LPE+MSA+ ++ I    + L+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  FSLLTITRPSEAANAQWNEIDFEKSLWNIPAERMKMKKAFTIPLSLQVLKILNKLKNISG  300
              L T+TRP+EA+ A+W+EI+ E  +W IPAERMK ++   IPL+ Q+L +L+ +K ISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  RSRFIFQSQRYPERPLHSSSANAAIKRVGYKDQLTSHGLRSIASTYLSETFTEMNLEILE  360
            +  FIF S+R P +P +S +AN A+KR+G+ ++L SHGLRS+AST L+E     + +++E
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNE--QGFDPDLVE  358

Query  361  ACLSHQSKNQVRNAYNRSTYLEQRKPLMNAWGDFVEECMKKSI  403
            + L+H   NQVR+AYNR+ YLE+RKP+M  W++ +EE  + S+
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  269 bits (1007),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 165/403 (41%), Positives = 268/403 (67%), Gaps = 2/403 (0%)

Query  1    MAKKVKPLVDTEIKKAKASNKPYTLTDGYGLFLIISPTGSKSWRFNYYRPITKKRAKISL  60
            MAK+   L D EIK +K+ +K Y L DG GL L I P GSK W FNYYRP   KRA++S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GLYPAITLSKARELREQYRQLLANKIDPQEYIKQHELLQLQRQNNTFFAISTQWKQKKVS  120
            G+YP I+L +AR      ++L+A+ IDPQ+  K+++ ++ + +++TF  ++ +W   K +
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN  120

Query  121  EIKSVTLKSRWRTLEKYAFPYLGDNPIAEITPQQLHDTVIPLFERGVSHTGKLVIALVNE  180
            ++ +      WR+LE   FP ++D+P+  IT+ ++ + + P+  +G  +T K +   +NE
Sbjct  121  DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE  180

Query  181  IMNFAVNKGIIEFNKCINVSKAFNVNRTTHHPTIRPEKLPEFMSALRHSHIDLMVKYLIE  240
            +MNFA N G+I+ N    +  AF+  +  + +++ P  LPE+MSA+ ++ I    + L+E
Sbjct  181  VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE  240

Query  241  FSLLTITRPSEAANAQWNEIDFEKSLWNIPAERMKMKKAFTIPLSLQVLKILNKLKNISG  300
              L T+TRP+EA+ A+W+EI+ E  +W IPAERMK ++   IPL+ Q+L +L+ +K ISG
Sbjct  241  WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG  300

Query  301  RSRFIFQSQRYPERPLHSSSANAAIKRVGYKDQLTSHGLRSIASTYLSETFTEMNLEILE  360
            +  FIF S+R P +P +S +AN A+KR+G+ ++L SHGLRS+AST L+E     + +++E
Sbjct  301  HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNE--QGFDPDLVE  358

Query  361  ACLSHQSKNQVRNAYNRSTYLEQRKPLMNAWGDFVEECMKKSI  403
            + L+H   NQVR+AYNR+ YLE+RKP+M  W++ +EE  + S+
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSL  401

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  268 bits (1001),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 174/404 (44%), Positives = 266/404 (66%), Gaps = 5/404 (1%)

Query  1    MARLTKPLTNTEIERAKAKEKEYTLSDGGGLYLLIKSNGAKLWRFNYYKPLTKKRALISF  60
            MA+ T  LT+ EI  +K++EKEY L DG+GL L IK+NG+K W FNYY+P   KRA +SF
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GRYPDISLQQARKQRDECLSLLAVNTDPLEHRQQMEREEQAKLENTLLKIVELWHSKRLD  120
            G YPDISL QARK       L+A   DP ++R++ ++ ++   E+T+ ++   W +    
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA----  116

Query  121  DVKHGEIQAETLRKNRAILDKHILPMLGHLAITEISPRIVVSALEPAKERGLGDTLKRAI  180
             +K+ ++ ++     +  L+ HI+P +++ ++  I++  ++  L P   +G  +T+KR  
Sbjct  117  -IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT  175

Query  181  RLLNEVLNFSVNADLIEFNKCLKVSDHFSTPKAVNNPTIPPKELPAFLEALRDSNLSLQT  240
            + LNEV+NF+ N +LI+ N    +   F  PK  N +++ P ELP ++ A+ ++++   T
Sbjct  176  QRLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTT  235

Query  241  KLLIKWQLLTITRPKEACEALWREIDWEAKTWTLPAEKMKMKRPHVIPLSNQSLRILEKM  300
            + L+ WQL T+TRP EA  A W EI+WE K WT+PAE+MK +R H IPL++Q L +LE M
Sbjct  236  RCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVM  295

Query  301  KKITGNSPFIFQSEIKPKQPMNSQTANRAIKLLGYEGRLTAHGLRSIASTYLNEQLVNYD  360
            K I+G+  FIF S+  PK+P NSQTAN A+K +G+ GRL +HGLRS+AST LNEQ  + D
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPD  355

Query  361  VVEACLAHVIKDQTRKAYNRSDYLDQRVEVMQQWADYVEKCSIG  404
            +VE+ LAHV  +Q R AYNR+DYL++R  +M  W++ +E  + G
Sbjct  356  LVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARG  399

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  266 bits (996),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 168/404 (42%), Positives = 267/404 (67%), Gaps = 5/404 (1%)

Query  1    MARKITPLNDTQIRKAKPEDS--PLRDGNGLLLVITSN-SKLWRFRYERPFTKKRNDLSI  57
            MA++   L D +I+ +KP +    L DG+GL L I +N SK W F Y RP   KR +LS+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  58   GAYPDISLAQAREIREEYRALLAQNIDPQTHRQQQEQAKANEISNTYENVAWAWLEHRKT  117
            G YPDISL QAR      + L+AQ IDPQ +R++Q+Q   +   +T+ENV+  W+  ++ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  118  KKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQYQDEGKLEKLKRAIQKH  177
             ++ + +Y  D+   +  +++PH++  P+  ITAP  I  +K  +  G LE +KR  Q+ 
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  178  NEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDLGEFLYTLQNAQIHLQTRYL  237
            NE+M FA +  +I  NP + I   F  P  E+  ++ P +L E++ ++ NA I   TR L
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  238  ILWQLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRGIEHKITLSRQAIALLREIKKL  297
            + WQL TMTRP EA+ A+W +I+   K+WTIPAE MK+  EH+I L+ Q +ALL  +K +
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  298  SGGKTYLFPSVKNPQTHVNTQTANGAIKRMGYKGKLVAHGLRAIASTYLNEKGYNSDLIE  357
            SG + ++FPS + P+   N+QTAN A+KRMG+ G+LV+HGLR++AST LNE+G+++DL+E
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  358  VALSHLNSDRIKAAYDRGERLEQRFKLLQVWADFVEECSQGSLP  401
             AL+H++ +++++AY+R + LE+R  ++  W++ +EE ++GSL+
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLS  402

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  266 bits (996),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 168/404 (42%), Positives = 267/404 (67%), Gaps = 5/404 (1%)

Query  1    MARKITPLNDTQIRKAKPEDS--PLRDGNGLLLVITSN-SKLWRFRYERPFTKKRNDLSI  57
            MA++   L D +I+ +KP +    L DG+GL L I +N SK W F Y RP   KR +LS+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  58   GAYPDISLAQAREIREEYRALLAQNIDPQTHRQQQEQAKANEISNTYENVAWAWLEHRKT  117
            G YPDISL QAR      + L+AQ IDPQ +R++Q+Q   +   +T+ENV+  W+  ++ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  118  KKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQYQDEGKLEKLKRAIQKH  177
             ++ + +Y  D+   +  +++PH++  P+  ITAP  I  +K  +  G LE +KR  Q+ 
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  178  NEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDLGEFLYTLQNAQIHLQTRYL  237
            NE+M FA +  +I  NP + I   F  P  E+  ++ P +L E++ ++ NA I   TR L
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  238  ILWQLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRGIEHKITLSRQAIALLREIKKL  297
            + WQL TMTRP EA+ A+W +I+   K+WTIPAE MK+  EH+I L+ Q +ALL  +K +
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  298  SGGKTYLFPSVKNPQTHVNTQTANGAIKRMGYKGKLVAHGLRAIASTYLNEKGYNSDLIE  357
            SG + ++FPS + P+   N+QTAN A+KRMG+ G+LV+HGLR++AST LNE+G+++DL+E
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  358  VALSHLNSDRIKAAYDRGERLEQRFKLLQVWADFVEECSQGSLP  401
             AL+H++ +++++AY+R + LE+R  ++  W++ +EE ++GSL+
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLS  402

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  266 bits (996),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 168/404 (42%), Positives = 267/404 (67%), Gaps = 5/404 (1%)

Query  1    MARKITPLNDTQIRKAKPEDS--PLRDGNGLLLVITSN-SKLWRFRYERPFTKKRNDLSI  57
            MA++   L D +I+ +KP +    L DG+GL L I +N SK W F Y RP   KR +LS+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  58   GAYPDISLAQAREIREEYRALLAQNIDPQTHRQQQEQAKANEISNTYENVAWAWLEHRKT  117
            G YPDISL QAR      + L+AQ IDPQ +R++Q+Q   +   +T+ENV+  W+  ++ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  118  KKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQYQDEGKLEKLKRAIQKH  177
             ++ + +Y  D+   +  +++PH++  P+  ITAP  I  +K  +  G LE +KR  Q+ 
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  178  NEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDLGEFLYTLQNAQIHLQTRYL  237
            NE+M FA +  +I  NP + I   F  P  E+  ++ P +L E++ ++ NA I   TR L
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  238  ILWQLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRGIEHKITLSRQAIALLREIKKL  297
            + WQL TMTRP EA+ A+W +I+   K+WTIPAE MK+  EH+I L+ Q +ALL  +K +
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  298  SGGKTYLFPSVKNPQTHVNTQTANGAIKRMGYKGKLVAHGLRAIASTYLNEKGYNSDLIE  357
            SG + ++FPS + P+   N+QTAN A+KRMG+ G+LV+HGLR++AST LNE+G+++DL+E
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  358  VALSHLNSDRIKAAYDRGERLEQRFKLLQVWADFVEECSQGSLP  401
             AL+H++ +++++AY+R + LE+R  ++  W++ +EE ++GSL+
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLS  402

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  266 bits (996),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 168/404 (42%), Positives = 267/404 (67%), Gaps = 5/404 (1%)

Query  1    MARKITPLNDTQIRKAKPEDS--PLRDGNGLLLVITSN-SKLWRFRYERPFTKKRNDLSI  57
            MA++   L D +I+ +KP +    L DG+GL L I +N SK W F Y RP   KR +LS+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  58   GAYPDISLAQAREIREEYRALLAQNIDPQTHRQQQEQAKANEISNTYENVAWAWLEHRKT  117
            G YPDISL QAR      + L+AQ IDPQ +R++Q+Q   +   +T+ENV+  W+  ++ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  118  KKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQYQDEGKLEKLKRAIQKH  177
             ++ + +Y  D+   +  +++PH++  P+  ITAP  I  +K  +  G LE +KR  Q+ 
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  178  NEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDLGEFLYTLQNAQIHLQTRYL  237
            NE+M FA +  +I  NP + I   F  P  E+  ++ P +L E++ ++ NA I   TR L
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  238  ILWQLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRGIEHKITLSRQAIALLREIKKL  297
            + WQL TMTRP EA+ A+W +I+   K+WTIPAE MK+  EH+I L+ Q +ALL  +K +
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  298  SGGKTYLFPSVKNPQTHVNTQTANGAIKRMGYKGKLVAHGLRAIASTYLNEKGYNSDLIE  357
            SG + ++FPS + P+   N+QTAN A+KRMG+ G+LV+HGLR++AST LNE+G+++DL+E
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  358  VALSHLNSDRIKAAYDRGERLEQRFKLLQVWADFVEECSQGSLP  401
             AL+H++ +++++AY+R + LE+R  ++  W++ +EE ++GSL+
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLS  402

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  266 bits (996),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 168/404 (42%), Positives = 267/404 (67%), Gaps = 5/404 (1%)

Query  1    MARKITPLNDTQIRKAKPEDS--PLRDGNGLLLVITSN-SKLWRFRYERPFTKKRNDLSI  57
            MA++   L D +I+ +KP +    L DG+GL L I +N SK W F Y RP   KR +LS+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  58   GAYPDISLAQAREIREEYRALLAQNIDPQTHRQQQEQAKANEISNTYENVAWAWLEHRKT  117
            G YPDISL QAR      + L+AQ IDPQ +R++Q+Q   +   +T+ENV+  W+  ++ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  118  KKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQYQDEGKLEKLKRAIQKH  177
             ++ + +Y  D+   +  +++PH++  P+  ITAP  I  +K  +  G LE +KR  Q+ 
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  178  NEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDLGEFLYTLQNAQIHLQTRYL  237
            NE+M FA +  +I  NP + I   F  P  E+  ++ P +L E++ ++ NA I   TR L
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  238  ILWQLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRGIEHKITLSRQAIALLREIKKL  297
            + WQL TMTRP EA+ A+W +I+   K+WTIPAE MK+  EH+I L+ Q +ALL  +K +
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  298  SGGKTYLFPSVKNPQTHVNTQTANGAIKRMGYKGKLVAHGLRAIASTYLNEKGYNSDLIE  357
            SG + ++FPS + P+   N+QTAN A+KRMG+ G+LV+HGLR++AST LNE+G+++DL+E
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  358  VALSHLNSDRIKAAYDRGERLEQRFKLLQVWADFVEECSQGSLP  401
             AL+H++ +++++AY+R + LE+R  ++  W++ +EE ++GSL+
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLS  402

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  265 bits (990),  Expect = 4e-72, Method: Compositional matrix adjust.
 Identities = 167/402 (42%), Positives = 264/402 (66%), Gaps = 10/402 (2%)

Query  1    MARITKPLTNTEVEKAKPKDKDYSLMDGQGLFLRVKTNGKKFWLFNYYKPFSTPPKRTNL  60
            MA+ T  LT+ E+  +KP++K+Y+L DG+GL LR+K NG K W+FNYY+P  T  KR+NL
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRP--TNGKRANL  58

Query  61   GIGAYPEISLAQAR--LIRDEWRALLAKNIDPKVHRQNIVDEEISKRENTFEAVAKKWRE  118
            ++G YP+ISL QAR  L+    + L+A+ IDP+ +R+   + +   +E+TFE V+K W  
Sbjct  59   SFGMYPDISLLQARKSLLSA--KELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFA  116

Query  119  KKSLEVQPKTMEKNWARLENHLFSKIGNVAVSEITPKMVIKAVEPLKVRGVGDTLHRVIR  178
             K  +V P      W  LE H+F+ I++ +V  IT+  +I  + P+  +G  +T+ R+ +
Sbjct  117  IKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQ  176

Query  179  LLNEVLNFAVNMGLIEFNKCVNVSANFSTHTAENNPTIRPELLPEFLSDLDDSNSSIQVK  238
             LNEV+NFA N GLI+ N    + A F     EN +++ P  LPE++S + +++     +
Sbjct  177  RLNEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTR  236

Query  239  TLIKWQLLTMVRPREAVSVEWQEIDFAKKTWTIPAPKMKGGKRSHTVPLSRQAITLLEKI  298
             L+ WQL TM RP EA +  W+EI+   K WTIPA +MK  +R H +PL+ Q ++LLE +
Sbjct  237  CLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMK-KRREHRIPLTEQMLALLEVM  295

Query  299  KSITGYKRFVFQSGTNPNRSMSSQTANRAIKLLVGGKYKDRLTAHGLRSIASTYLNEQLI  358
            K+I+G + F+F S+  P+++ +SQTAN A+K +    + +RL +HGLRS+AST LNEQ +
Sbjct  296  KPISGHRDFIFPSDRAPKKPCNSQTANMALKRMG---FAGRLVSHGLRSLASTTLNEQGF  352

Query  359  NYDVIEACLSHIIADQTRKAYNRSDYFEQRIEVMQQWGDYVE  400
            + D++E+ L+H+  +Q R AYNR+DY+E+R  +M  W++ +E
Sbjct  353  DPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIE  394

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  259 bits (968),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 163/393 (42%), Positives = 258/393 (66%), Gaps = 5/393 (1%)

Query  1    MARKITPLNDTQIRKAKPEDS--PLRDGNGLLLVITSN-SKLWRFRYERPFTKKRNDLSI  57
            MA++   L D +I+ +KP +    L DG+GL L I +N SK W F Y RP   KR +LS+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  58   GAYPDISLAQAREIREEYRALLAQNIDPQTHRQQQEQAKANEISNTYENVAWAWLEHRKT  117
            G YPDISL QAR      + L+AQ IDPQ +R++Q+Q   +   +T+ENV+  W+  ++ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  118  KKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQYQDEGKLEKLKRAIQKH  177
             ++ + +Y  D+   +  +++PH++  P+  ITAP  I  +K  +  G LE +KR  Q+ 
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  178  NEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDLGEFLYTLQNAQIHLQTRYL  237
            NE+M FA +  +I  NP + I   F  P  E+  ++ P +L E++ ++ NA I   TR L
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  238  ILWQLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRGIEHKITLSRQAIALLREIKKL  297
            + WQL TMTRP EA+ A+W +I+   K+WTIPAE MK+  EH+I L+ Q +ALL  +K +
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  298  SGGKTYLFPSVKNPQTHVNTQTANGAIKRMGYKGKLVAHGLRAIASTYLNEKGYNSDLIE  357
            SG + ++FPS + P+   N+QTAN A+KRMG+ G+LV+HGLR++AST LNE+G+++DL+E
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVE  358

Query  358  VALSHLNSDRIKAAYDRGERLEQRFKLLQVWAD  390
             AL+H++ +++++AY+R + LE+R  ++  W++
Sbjct  359  SALAHVDDNQVRSAYNRTDYLERRKPMMCWWSE  391

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  247 bits (924),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 152/341 (45%), Positives = 228/341 (67%), Gaps = 2/341 (0%)

Query  1    MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSL  60
            M+++   LT+ EI ++KPR  +Y+L DG+GL L +K +G K W F+YY+P   KR++ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKR  120
            G YP ++L  AR +    + L+ QGIDP+++     +  +  +E T+E+V+ +W+  K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  121  TSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRL  180
             +D++ D A D+WRSLE+H+FP +++ PV  I +  + E L P+E +G LET++R+  RL
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  181  NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCL  240
            NE+  FA +  LI+ NP   + A FKKPKK+NM+AL P+EL  LM A+ NASI++ TRCL
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  241  IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV  300
            +EW+L T  RP+EA +ARW +I+     W IP   MK  R H +PL+ Q L +L++M P+
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  301  SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGM  341
            S HR  +FPS R P    + QTAN AL RMGF+G LV+HG+
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGL  339

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  247 bits (924),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 152/341 (45%), Positives = 228/341 (67%), Gaps = 2/341 (0%)

Query  1    MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSL  60
            M+++   LT+ EI ++KPR  +Y+L DG+GL L +K +G K W F+YY+P   KR++ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKR  120
            G YP ++L  AR +    + L+ QGIDP+++     +  +  +E T+E+V+ +W+  K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  121  TSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRL  180
             +D++ D A D+WRSLE+H+FP +++ PV  I +  + E L P+E +G LET++R+  RL
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  181  NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCL  240
            NE+  FA +  LI+ NP   + A FKKPKK+NM+AL P+EL  LM A+ NASI++ TRCL
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  241  IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV  300
            +EW+L T  RP+EA +ARW +I+     W IP   MK  R H +PL+ Q L +L++M P+
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  301  SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGM  341
            S HR  +FPS R P    + QTAN AL RMGF+G LV+HG+
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGL  339

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  247 bits (924),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 152/341 (45%), Positives = 228/341 (67%), Gaps = 2/341 (0%)

Query  1    MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSL  60
            M+++   LT+ EI ++KPR  +Y+L DG+GL L +K +G K W F+YY+P   KR++ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKR  120
            G YP ++L  AR +    + L+ QGIDP+++     +  +  +E T+E+V+ +W+  K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  121  TSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRL  180
             +D++ D A D+WRSLE+H+FP +++ PV  I +  + E L P+E +G LET++R+  RL
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  181  NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCL  240
            NE+  FA +  LI+ NP   + A FKKPKK+NM+AL P+EL  LM A+ NASI++ TRCL
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  241  IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV  300
            +EW+L T  RP+EA +ARW +I+     W IP   MK  R H +PL+ Q L +L++M P+
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  301  SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGM  341
            S HR  +FPS R P    + QTAN AL RMGF+G LV+HG+
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGL  339

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  247 bits (924),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 152/341 (45%), Positives = 228/341 (67%), Gaps = 2/341 (0%)

Query  1    MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSL  60
            M+++   LT+ EI ++KPR  +Y+L DG+GL L +K +G K W F+YY+P   KR++ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKR  120
            G YP ++L  AR +    + L+ QGIDP+++     +  +  +E T+E+V+ +W+  K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  121  TSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRL  180
             +D++ D A D+WRSLE+H+FP +++ PV  I +  + E L P+E +G LET++R+  RL
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  181  NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCL  240
            NE+  FA +  LI+ NP   + A FKKPKK+NM+AL P+EL  LM A+ NASI++ TRCL
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  241  IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV  300
            +EW+L T  RP+EA +ARW +I+     W IP   MK  R H +PL+ Q L +L++M P+
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  301  SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGM  341
            S HR  +FPS R P    + QTAN AL RMGF+G LV+HG+
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGL  339

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  247 bits (924),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 152/341 (45%), Positives = 228/341 (67%), Gaps = 2/341 (0%)

Query  1    MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSL  60
            M+++   LT+ EI ++KPR  +Y+L DG+GL L +K +G K W F+YY+P   KR++ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKR  120
            G YP ++L  AR +    + L+ QGIDP+++     +  +  +E T+E+V+ +W+  K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  121  TSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRL  180
             +D++ D A D+WRSLE+H+FP +++ PV  I +  + E L P+E +G LET++R+  RL
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  181  NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCL  240
            NE+  FA +  LI+ NP   + A FKKPKK+NM+AL P+EL  LM A+ NASI++ TRCL
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  241  IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV  300
            +EW+L T  RP+EA +ARW +I+     W IP   MK  R H +PL+ Q L +L++M P+
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  301  SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGM  341
            S HR  +FPS R P    + QTAN AL RMGF+G LV+HG+
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGL  339

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  247 bits (924),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 152/341 (45%), Positives = 228/341 (67%), Gaps = 2/341 (0%)

Query  1    MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSL  60
            M+++   LT+ EI ++KPR  +Y+L DG+GL L +K +G K W F+YY+P   KR++ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKR  120
            G YP ++L  AR +    + L+ QGIDP+++     +  +  +E T+E+V+ +W+  K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  121  TSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRL  180
             +D++ D A D+WRSLE+H+FP +++ PV  I +  + E L P+E +G LET++R+  RL
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  181  NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCL  240
            NE+  FA +  LI+ NP   + A FKKPKK+NM+AL P+EL  LM A+ NASI++ TRCL
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  241  IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV  300
            +EW+L T  RP+EA +ARW +I+     W IP   MK  R H +PL+ Q L +L++M P+
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  301  SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGM  341
            S HR  +FPS R P    + QTAN AL RMGF+G LV+HG+
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGL  339

> NC_002505_P3|30|G27|15640863|NP_230494.1|Vibrio_cholerae_O1_biovar_eltor_str._N16961|-|39615..40883|-|VC0847|phage 
family 
integrase
Length=422

 Score =  247 bits (924),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 152/341 (45%), Positives = 228/341 (67%), Gaps = 2/341 (0%)

Query  1    MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSL  60
            M+++   LT+ EI ++KPR  +Y+L DG+GL L +K +G K W F+YY+P   KR++ S+
Sbjct  1    MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF  60

Query  61   GPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKR  120
            G YP ++L  AR +    + L+ QGIDP+++     +  +  +E T+E+V+ +W+  K+ 
Sbjct  61   GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQ-  119

Query  121  TSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRL  180
             +D++ D A D+WRSLE+H+FP +++ PV  I +  + E L P+E +G LET++R+  RL
Sbjct  120  -NDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL  178

Query  181  NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCL  240
            NE+  FA +  LI+ NP   + A FKKPKK+NM+AL P+EL  LM A+ NASI++ TRCL
Sbjct  179  NEVMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCL  238

Query  241  IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV  300
            +EW+L T  RP+EA +ARW +I+     W IP   MK  R H +PL+ Q L +L++M P+
Sbjct  239  LEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPI  298

Query  301  SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGM  341
            S HR  +FPS R P    + QTAN AL RMGF+G LV+HG+
Sbjct  299  SGHRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGL  339