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Homologs of eae gene of JQ747523

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) eae
( YP_003366493.1 )

intimin

NC_013716
(Citrobacter rodentium ICC168)

0.0

2) ECH74115_5054
( YP_002273158.1 )

intimin C-type lectin domain-containing protein

NC_011353
(Escherichia coli EC4115)

0.0

3) eae
( NP_290259.1 )

intimin adherence protein

NC_002655
(Escherichia coli EDL933)

0.0

4) ECs4559
( NP_312586.1 )

gamma intimin

NC_002695
(Escherichia coli Sakai)

0.0

5) eae
( YP_003080471.1 )

intimin adherence protein

NC_013008
(Escherichia coli TW14359)

0.0

6) CDCO157_4293
( YP_006315159.1 )

gamma intimin

NC_017906
(Escherichia coli Xuzhou21)

0.0

7) eae
( YP_003501865.1 )

Gamma intimin

NC_013941
(Escherichia coli CB9615)

0.0

8) ECO55CA74_21185
( YP_006161342.1 )

Gamma intimin

NC_017656
(Escherichia coli RM12579)

0.0

9) eaeA
( YP_002331401.1 )

intimin EaeA

NC_011601
(Escherichia coli E2348/69)

0.0

10) eae
( YP_003236079.1 )

theta intimin

NC_013364
(Escherichia coli 11128)

0.0

• Sequence Alignments

1) eae in NC_013716


> JQ747523|30|G28|397781899|AFO66294.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|26979..30023|eae|SESS1296_03625|intimin-like 
protein
Length=1014

 Score =  721 bits (2729),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 436/739 (59%), Positives = 586/739 (80%), Gaps = 18/739 (2%)

Query  31   FSVNQNSFANGENYFKLRADSKLI-NNNIAQDRLFYTLKTGESVAQLSKSQGISVPVIWS  89
            F+   N++A+  NYF++   SKLI NN+  +++LFY +K GE++  ++KSQ +SV+ IWS
Sbjct  29   FGTMPNALAENTNYFQVSDISKLITNNETIKNQLFYVIKKGETIESIAKSQQVSVSTIWS  88

Query  90   LNKHLYSSESEMMKASPGQQIILPLKKLSAEYSTLPILGTAPVVAAADVAGHTKKMSQDT  149
            LNK  +++ + M+ A+PG QI+LPL+K+ AE             +A+DV++    +  D 
Sbjct  89   LNKGRFATLNAMLDAPPGTQIVLPLNKIKAE---------KETRSATDVSA-GLLLHSDP  138

Query  150  TKSNTSDDKALNYaaqqaaslgsqlqsrslNGDYAKDTALSMAGNQASSQMQAWLQHYGT  209
             KS+++++   + + Q A+   +       N++YA     ++ GN+A SQ+Q+WLQ+YGT
Sbjct  139  VKSSSAENFDSKSTKQYATVGNTLQSITEGNAQYA---VRNIIGNEAQSQLQSWLQRYGT  195

Query  210  AEVNLQSGNNFDGSSLDFLLPFYDTENMLAFGQVGARYIDSRFTANLGAGQRFFLPENML  269
            AE+NLQSGNNFDGSSLDFLLPFYDTE+M+AF+Q+G+RYIDSRFT+NLGAGQRFF P NML
Sbjct  196  AELNLQSGNNFDGSSLDFLLPFYDTEDMMAFSQIGGRYIDSRFTGNLGAGQRFFTPTNML  255

Query  270  GYNVFIDQDFSGNNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDI  329
            GYNVFID+DFSG+NTRLGIG+EYWRDYFKSS NGYFR++ WH+SYNK DYDERPANGFDI
Sbjct  256  GYNVFIDRDFSGSNTRLGIGAEYWRDYFKSSANGYFRLTNWHQSYNKEDYDERPANGFDI  315

Query  330  RFNGYLPSYPALGGKLMYEQYYGDNVALFNADKLYSNPGAVTVGVNYTPIPLVTMGIDYR  389
            R NGYLPS PALG+K+MYEQYYGDNVALFNAD+L SNPGA+TVG+NYTP+PLVTMG+DYR
Sbjct  316  RVNGYLPSWPALGAKVMYEQYYGDNVALFNADQLQSNPGALTVGLNYTPVPLVTMGVDYR  375

Query  390  HGTGNENDLLYSMQFHYQFDKPWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILDYKKQD  449
            HGTGNEND+LYS+Q++YQ+DKPWSQQIEPQ V+ LRTLSGSRYDLVQRNNNI+++YKKQ+
Sbjct  376  HGTGNENDVLYSLQLRYQLDKPWSQQIEPQNVEALRTLSGSRYDLVQRNNNIVMEYKKQN  435

Query  450  ILSMNIPHNINGTEHSTHKIQLIVKSKYGLERIVWDDSTLRTqggqiqhsgsqsaqDYQA  509
            ++S+ +P+NI+GT  S ++IQ++VKSK +L++I WDDS+L+ +GG+I+H+++++  DYQ 
Sbjct  436  VISLTLPQNISGTAGSLQNIQVVVKSKHALDHIAWDDSALKKNGGEIRHGSGKGLSDYQV  495

Query  510  ILPAYVQGGSNVYKVTARAYDRNGNSSNNVQLTITVLSNGQVVDKVGITNFTADKTSAKA  569
            ++PAY  +G+NVY+V ARAYD NGNSSNN  LT+TV + + +V+K  +T+FT DK SA A
Sbjct  496  LMPAYNPSGNNVYQVMARAYDSNGNSSNNAPLTVTV-TPSSIVEKTEVTDFTHDKNSAAA  554

Query  570  DNADTITYTATVKKNGVAQANVPVSFNIVSGTATLSAKSANTNSSGKATVTLKSDKPGQV  629
            +N++ IT+TA V K G  Q NVPVSF+IVSGTATLS+ S+NT+S+G ATVTLKS  PGQV
Sbjct  555  NNTEIITFTAKVTKGGSLQDNVPVSFSIVSGTATLSSTSSNTDSAGLATVTLKSSTPGQV  614

Query  630  VVSAKTAEMTSALNANAVIFVDQTKASITEIKVDKTIATADNKDTIEYTVKVMKGGNPIS  689
            +V+AKT+EM+S+LNA +V FV+++ ASIT I VDKT A A+  D I YT  VMK GNP+S
Sbjct  615  IVAAKTSEMSSPLNATPVNFVNESLASITSIEVDKTSAVANGIDRITYTATVMKNGNPLS  674

Query  690  GQKVTFSKDFGTLNKTEATTDQNGYATVKLSSGTPGKAIVSAKVSEVNTEVKAATVEFFA  749
             + VTF+  FG L++T  TT+  G A+V L+S+  GKA+VSA  SEV T V+A  VEF++
Sbjct  675  NETVTFATSFGNLSQTTVTTNAAGKASVTLTSANVGKAVVSAHTSEVATPVNAQEVEFIG  734

Query  750  PLSIDG---NKVTVIGTGV  765
             LSID+   +K + I+ G+
Sbjct  735  NLSIDSITVDKTSAISNGI  753


 Score =  259 bits (967),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 175/382 (46%), Positives = 269/382 (71%), Gaps = 9/382 (2%)

Query  556   GITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNIVSGTATLSAKSANTNSSG  615
             +IT++  DKTSA A+  D ITYTATV KNG + +N  V+F   ++ + LS  +  TN++G
Sbjct  641   SITSIEVDKTSAVANGIDRITYTATVMKNGNPLSNETVTFA--TSFGNLSQTTVTTNAAG  698

Query  616   KATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKVDKTIATADNKDTI  675
             KA+VTL S + G+ VVSA T+E+++++NA+ V F++  + SI  I VDKT A ++  D +
Sbjct  699   KASVTLTSANVGKAVVSAHTSEVATPVNAQEVEFIG--NLSIDSITVDKTSAISNGIDKF  756

Query  676   EYTVKVMKGGNPISGQKVTFSKDFGTLNKTEATTDQNGYATVKLSSGTPGKAIVSAKVSE  735
              YTV V + ++P + + V F+  +G L+ +  TTD +G A V L+S+T+GKA+V+A    
Sbjct  757   TYTVTVTRNSQPAANETVNFASTLGVLSLSTLTTDSSGKAVVTLTSSTAGKALVTATSDG  816

Query  736   VNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNWLQYGQVKLQATGGNGKYTWK-S  794
             V+ + +   VEFF+PLSID+ +V +IGTGV+G+LP  WLQYGQ++L+ TGGNG YTWK +
Sbjct  817   VQRQANE--VEFFSPLSIDSGNVEIIGTGVSGALPSTWLQYGQIRLKVTGGNGTYTWKSA  874

Query  795   SNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTINTPDNIIIAVDKINRMAYSEAE  854
             + +  +   +SG ITLN K+++TITV SGDNQ+A YTIN+P ++I A D  +R++   A 
Sbjct  875   NASAASVEASSGKITLNSKAGTTITVTSGDNQTAIYTINAPTKLITA-DTSSRVT-YAAA  932

Query  855   SRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNSLTAWIKQSTSDSASGVSNTYDL  914
             +   A ++ LA+ +S L  +++ WGAAN Y  YS++ S+TAW+KQ++++ A+G ++TYDL
Sbjct  933   NATCAATGRLANDQSELAGVFATWGAANTYDHYSNAASITAWVKQTSAEIAAGAASTYDL  992

Query  915   VTTNSLTNVKATDKNAFAVCVK  936
             V  N+L+NVK    +AFAVCV+
Sbjct  993   VRQNPLSNVKVNSASAFAVCVQ  1014


 Score = 45.3 bits (152),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 34/87 (40%), Positives = 57/87 (66%), Gaps = 2/87 (2%)

Query  552  VDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNIVSGTATLSAKSANT  611
            +++++I ++T DKTSA ++  D +TYT TV +N+ + AN  V+F    G  +LS  +  T
Sbjct  733  IGNLSIDSITVDKTSAISNGIDKFTYTVTVTRNSQPAANETVNFASTLGVLSLS--TLTT  790

Query  612  NSSGKATVTLKSDKPGQVVVSAKTAEM  638
            +SSGKA VTL S  +G+ +V+A +  +
Sbjct  791  DSSGKAVVTLTSSTAGKALVTATSDGV  817

2) ECH74115_5054 in NC_011353


> JQ747523|30|G28|397781899|AFO66294.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|26979..30023|eae|SESS1296_03625|intimin-like 
protein
Length=1014

 Score =  709 bits (2680),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 437/741 (59%), Positives = 592/741 (80%), Gaps = 26/741 (3%)

Query  35   QNSFANGENYFKLGSDSKLLTH-DSYQNRLFYTLKTGETVADLSKSQDINLSTIWSLNKH  93
             N++A+  NYF+++  SKL+T+ ++ +N+LFY +K GET+  ++KSQ++++STIWSLNK 
Sbjct  33   PNALAENTNYFQVSDISKLITNNETIKNQLFYVIKKGETIESIAKSQQVSVSTIWSLNKG  92

Query  94   LYSSESEMMKAAPGQQIILPLKKLPFEYSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVT  153
             +++ + M+ A+PG QI+LPL+K+  E  +      ++   ++G+  H++ +   S++  
Sbjct  93   RFATLNAMLDAPPGTQIVLPLNKIKAEKET-----RSATDVSAGLLLHSDPVKSSSAE--  145

Query  154  KSNMTDDKALNYaaqqaaslgsqlqsrslNGDYAKDTALGIAGNQASSQLQAWLQHYGTA  213
              N     + +YA+   +  +        N++YA      I GN+A SQLQ+WLQ+YGTA
Sbjct  146  --NFDSKSTKQYATVGNTLQSITEG----NAQYA---VRNIIGNEAQSQLQSWLQRYGTA  196

Query  214  EVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLG  273
            E+NLQSGNNFDGSSLDFLLPFYD+E M+AF+Q+G+RYIDSRFT+NLGAGQRFF P+NMLG
Sbjct  197  ELNLQSGNNFDGSSLDFLLPFYDTEDMMAFSQIGGRYIDSRFTGNLGAGQRFFTPTNMLG  256

Query  274  YNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIR  333
            YNVFID+DFSG NTRLGIG+EYWRDYFKSS NGYFR++ WH+SYNK DYDERPANGFDIR
Sbjct  257  YNVFIDRDFSGSNTRLGIGAEYWRDYFKSSANGYFRLTNWHQSYNKEDYDERPANGFDIR  316

Query  334  FNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRH  393
             NGYLPS PALGAK++YEQYYGDNVALFN+D+LQSNPGA TVG+NYTP+PLVTMG+DYRH
Sbjct  317  VNGYLPSWPALGAKVMYEQYYGDNVALFNADQLQSNPGALTVGLNYTPVPLVTMGVDYRH  376

Query  394  GTGNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDI  453
            GTGNEND+LYS+Q+RYQ+DK+WSQQIEPQ V+ LRTLSGSRYDLVQRNNNI++EYKKQ++
Sbjct  377  GTGNENDVLYSLQLRYQLDKPWSQQIEPQNVEALRTLSGSRYDLVQRNNNIVMEYKKQNV  436

Query  454  LSLNIPHDINGTEHSTQKIQLIVKSKYGLDRIVWDDSALRsqggqiqhsgsqsAQDYQAI  513
            +SL +P++I+GT  S Q+IQ++VKSK +LD+I WDDSAL+ +GG+I+H+++++  DYQ +
Sbjct  437  ISLTLPQNISGTAGSLQNIQVVVKSKHALDHIAWDDSALKKNGGEIRHGSGKGLSDYQVL  496

Query  514  LPAYVQGGSNIYKVTARAYDRNGNSSNNVQLTITVLSNGQVVDQVGVTDFTADKTSAKAD  573
            +PAY  +G+N+Y+V ARAYD NGNSSNN  LT+TV + + +V++  VTDFT DK SA A+
Sbjct  497  MPAYNPSGNNVYQVMARAYDSNGNSSNNAPLTVTV-TPSSIVEKTEVTDFTHDKNSAAAN  555

Query  574  NADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANGKATVTLKSSTPGQVV  633
            N++ IT+TA V K G  Q NVPVSF+IVSGTATL++ S++TD+ G ATVTLKSSTPGQV+
Sbjct  556  NTEIITFTAKVTKGGSLQDNVPVSFSIVSGTATLSSTSSNTDSAGLATVTLKSSTPGQVI  615

Query  634  VSAKTAEMTSALNASAVIFFDQTKASITEIKADKTTAVANGKDAIKYTVKVMKNGQPVNN  693
            V+AKT+EM+S+LNA++V F +++ ASIT I  DKT+AVANG D I YT  VMKNG+P++N
Sbjct  616  VAAKTSEMSSPLNATPVNFVNESLASITSIEVDKTSAVANGIDRITYTATVMKNGNPLSN  675

Query  694  QSVTFSTNFGMFNGKSQTQATTGNDGRATITLTSSSAGKATVSATVSD-GAEVKATEVTF  752
            ++VTF+T+FG +   SQT  TT   G+A++TLTS++ GKA VSA  S+ ++ V+A EV F
Sbjct  676  ETVTFATSFGNL---SQTTVTTNAAGKASVTLTSANVGKAVVSAHTSEVATPVNAQEVEF  732

Query  753  FDELKID----NKVDIIGNNV  769
            +++L ID    +K   I+N +
Sbjct  733  IGNLSIDSITVDKTSAISNGI  753


 Score =  252 bits (943),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 174/382 (46%), Positives = 268/382 (71%), Gaps = 14/382 (3%)

Query  559   GVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANG  618
             ++T +  DKTSA A+  D ITYTATV KNG + +N  V+F   ++ + L+  +  T+A G
Sbjct  641   SITSIEVDKTSAVANGIDRITYTATVMKNGNPLSNETVTFA--TSFGNLSQTTVTTNAAG  698

Query  619   KATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASITEIKADKTTAVANGKDAI  678
             KA+VTL S+  G+ VVSA T+E+++++NA  V F++  + SI  I  DKT+A++NG D +
Sbjct  699   KASVTLTSANVGKAVVSAHTSEVATPVNAQEVEFIG--NLSIDSITVDKTSAISNGIDKF  756

Query  679   KYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGRATITLTSSSAGKATVSAT  738
              YTV V +N+QP  N++V F++ +G++   S +  TT++ G+A +TLTSS+AGKA V+AT
Sbjct  757   TYTVTVTRNSQPAANETVNFASTLGVL---SLSTLTTDSSGKAVVTLTSSTAGKALVTAT  813

Query  739   VSDGAEVKATEVTFFDELKIDN-KVDIIGNNVRGELPNIWLQYGQFKLKASGGDGTYSW-  796
              SDG + +A EV FF  L ID+ +V+IIG  V G LP+ WLQYGQ++LK +GG+GTY+W 
Sbjct  814   -SDGVQRQANEVEFFSPLSIDSGNVEIIGTGVSGALPSTWLQYGQIRLKVTGGNGTYTWK  872

Query  797   YSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKAPSYMIKVDKQA----YYA  852
              ++ ++ +   +SGK+TLN+K++  I  TSGD+QT  YTI+AP+ +I  D  +      A
Sbjct  873   SANASAASVEASSGKITLNSKAGTTITVTSGDNQTAIYTINAPTKLITADTSSRVTYAAA  932

Query  853   DAMSICKNLLPSTQTVLSDIYDSWGAANKYSHYSSMNSITAWIKQTSSEQRSGVSSTYNL  912
             +A       L++ Q+ L++++ +WGAAN Y HYS+  SITAW+KQTS+E  +G +STY+L
Sbjct  933   NATCAATGRLANDQSELAGVFATWGAANTYDHYSNAASITAWVKQTSAEIAAGAASTYDL  992

Query  913   ITQNPLPGVNVNTPNVYAVCVE  934
             + QNPL+ V+VN+++ +AVCV+
Sbjct  993   VRQNPLSNVKVNSASAFAVCVQ  1014

3) eae in NC_002655


> JQ747523|30|G28|397781899|AFO66294.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|26979..30023|eae|SESS1296_03625|intimin-like 
protein
Length=1014

 Score =  709 bits (2680),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 437/741 (59%), Positives = 592/741 (80%), Gaps = 26/741 (3%)

Query  35   QNSFANGENYFKLGSDSKLLTH-DSYQNRLFYTLKTGETVADLSKSQDINLSTIWSLNKH  93
             N++A+  NYF+++  SKL+T+ ++ +N+LFY +K GET+  ++KSQ++++STIWSLNK 
Sbjct  33   PNALAENTNYFQVSDISKLITNNETIKNQLFYVIKKGETIESIAKSQQVSVSTIWSLNKG  92

Query  94   LYSSESEMMKAAPGQQIILPLKKLPFEYSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVT  153
             +++ + M+ A+PG QI+LPL+K+  E  +      ++   ++G+  H++ +   S++  
Sbjct  93   RFATLNAMLDAPPGTQIVLPLNKIKAEKET-----RSATDVSAGLLLHSDPVKSSSAE--  145

Query  154  KSNMTDDKALNYaaqqaaslgsqlqsrslNGDYAKDTALGIAGNQASSQLQAWLQHYGTA  213
              N     + +YA+   +  +        N++YA      I GN+A SQLQ+WLQ+YGTA
Sbjct  146  --NFDSKSTKQYATVGNTLQSITEG----NAQYA---VRNIIGNEAQSQLQSWLQRYGTA  196

Query  214  EVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLG  273
            E+NLQSGNNFDGSSLDFLLPFYD+E M+AF+Q+G+RYIDSRFT+NLGAGQRFF P+NMLG
Sbjct  197  ELNLQSGNNFDGSSLDFLLPFYDTEDMMAFSQIGGRYIDSRFTGNLGAGQRFFTPTNMLG  256

Query  274  YNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIR  333
            YNVFID+DFSG NTRLGIG+EYWRDYFKSS NGYFR++ WH+SYNK DYDERPANGFDIR
Sbjct  257  YNVFIDRDFSGSNTRLGIGAEYWRDYFKSSANGYFRLTNWHQSYNKEDYDERPANGFDIR  316

Query  334  FNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRH  393
             NGYLPS PALGAK++YEQYYGDNVALFN+D+LQSNPGA TVG+NYTP+PLVTMG+DYRH
Sbjct  317  VNGYLPSWPALGAKVMYEQYYGDNVALFNADQLQSNPGALTVGLNYTPVPLVTMGVDYRH  376

Query  394  GTGNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDI  453
            GTGNEND+LYS+Q+RYQ+DK+WSQQIEPQ V+ LRTLSGSRYDLVQRNNNI++EYKKQ++
Sbjct  377  GTGNENDVLYSLQLRYQLDKPWSQQIEPQNVEALRTLSGSRYDLVQRNNNIVMEYKKQNV  436

Query  454  LSLNIPHDINGTEHSTQKIQLIVKSKYGLDRIVWDDSALRsqggqiqhsgsqsAQDYQAI  513
            +SL +P++I+GT  S Q+IQ++VKSK +LD+I WDDSAL+ +GG+I+H+++++  DYQ +
Sbjct  437  ISLTLPQNISGTAGSLQNIQVVVKSKHALDHIAWDDSALKKNGGEIRHGSGKGLSDYQVL  496

Query  514  LPAYVQGGSNIYKVTARAYDRNGNSSNNVQLTITVLSNGQVVDQVGVTDFTADKTSAKAD  573
            +PAY  +G+N+Y+V ARAYD NGNSSNN  LT+TV + + +V++  VTDFT DK SA A+
Sbjct  497  MPAYNPSGNNVYQVMARAYDSNGNSSNNAPLTVTV-TPSSIVEKTEVTDFTHDKNSAAAN  555

Query  574  NADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANGKATVTLKSSTPGQVV  633
            N++ IT+TA V K G  Q NVPVSF+IVSGTATL++ S++TD+ G ATVTLKSSTPGQV+
Sbjct  556  NTEIITFTAKVTKGGSLQDNVPVSFSIVSGTATLSSTSSNTDSAGLATVTLKSSTPGQVI  615

Query  634  VSAKTAEMTSALNASAVIFFDQTKASITEIKADKTTAVANGKDAIKYTVKVMKNGQPVNN  693
            V+AKT+EM+S+LNA++V F +++ ASIT I  DKT+AVANG D I YT  VMKNG+P++N
Sbjct  616  VAAKTSEMSSPLNATPVNFVNESLASITSIEVDKTSAVANGIDRITYTATVMKNGNPLSN  675

Query  694  QSVTFSTNFGMFNGKSQTQATTGNDGRATITLTSSSAGKATVSATVSD-GAEVKATEVTF  752
            ++VTF+T+FG +   SQT  TT   G+A++TLTS++ GKA VSA  S+ ++ V+A EV F
Sbjct  676  ETVTFATSFGNL---SQTTVTTNAAGKASVTLTSANVGKAVVSAHTSEVATPVNAQEVEF  732

Query  753  FDELKID----NKVDIIGNNV  769
            +++L ID    +K   I+N +
Sbjct  733  IGNLSIDSITVDKTSAISNGI  753


 Score =  252 bits (943),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 174/382 (46%), Positives = 268/382 (71%), Gaps = 14/382 (3%)

Query  559   GVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANG  618
             ++T +  DKTSA A+  D ITYTATV KNG + +N  V+F   ++ + L+  +  T+A G
Sbjct  641   SITSIEVDKTSAVANGIDRITYTATVMKNGNPLSNETVTFA--TSFGNLSQTTVTTNAAG  698

Query  619   KATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASITEIKADKTTAVANGKDAI  678
             KA+VTL S+  G+ VVSA T+E+++++NA  V F++  + SI  I  DKT+A++NG D +
Sbjct  699   KASVTLTSANVGKAVVSAHTSEVATPVNAQEVEFIG--NLSIDSITVDKTSAISNGIDKF  756

Query  679   KYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGRATITLTSSSAGKATVSAT  738
              YTV V +N+QP  N++V F++ +G++   S +  TT++ G+A +TLTSS+AGKA V+AT
Sbjct  757   TYTVTVTRNSQPAANETVNFASTLGVL---SLSTLTTDSSGKAVVTLTSSTAGKALVTAT  813

Query  739   VSDGAEVKATEVTFFDELKIDN-KVDIIGNNVRGELPNIWLQYGQFKLKASGGDGTYSW-  796
              SDG + +A EV FF  L ID+ +V+IIG  V G LP+ WLQYGQ++LK +GG+GTY+W 
Sbjct  814   -SDGVQRQANEVEFFSPLSIDSGNVEIIGTGVSGALPSTWLQYGQIRLKVTGGNGTYTWK  872

Query  797   YSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKAPSYMIKVDKQA----YYA  852
              ++ ++ +   +SGK+TLN+K++  I  TSGD+QT  YTI+AP+ +I  D  +      A
Sbjct  873   SANASAASVEASSGKITLNSKAGTTITVTSGDNQTAIYTINAPTKLITADTSSRVTYAAA  932

Query  853   DAMSICKNLLPSTQTVLSDIYDSWGAANKYSHYSSMNSITAWIKQTSSEQRSGVSSTYNL  912
             +A       L++ Q+ L++++ +WGAAN Y HYS+  SITAW+KQTS+E  +G +STY+L
Sbjct  933   NATCAATGRLANDQSELAGVFATWGAANTYDHYSNAASITAWVKQTSAEIAAGAASTYDL  992

Query  913   ITQNPLPGVNVNTPNVYAVCVE  934
             + QNPL+ V+VN+++ +AVCV+
Sbjct  993   VRQNPLSNVKVNSASAFAVCVQ  1014

4) ECs4559 in NC_002695


> JQ747523|30|G28|397781899|AFO66294.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|26979..30023|eae|SESS1296_03625|intimin-like 
protein
Length=1014

 Score =  709 bits (2680),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 437/741 (59%), Positives = 592/741 (80%), Gaps = 26/741 (3%)

Query  35   QNSFANGENYFKLGSDSKLLTH-DSYQNRLFYTLKTGETVADLSKSQDINLSTIWSLNKH  93
             N++A+  NYF+++  SKL+T+ ++ +N+LFY +K GET+  ++KSQ++++STIWSLNK 
Sbjct  33   PNALAENTNYFQVSDISKLITNNETIKNQLFYVIKKGETIESIAKSQQVSVSTIWSLNKG  92

Query  94   LYSSESEMMKAAPGQQIILPLKKLPFEYSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVT  153
             +++ + M+ A+PG QI+LPL+K+  E  +      ++   ++G+  H++ +   S++  
Sbjct  93   RFATLNAMLDAPPGTQIVLPLNKIKAEKET-----RSATDVSAGLLLHSDPVKSSSAE--  145

Query  154  KSNMTDDKALNYaaqqaaslgsqlqsrslNGDYAKDTALGIAGNQASSQLQAWLQHYGTA  213
              N     + +YA+   +  +        N++YA      I GN+A SQLQ+WLQ+YGTA
Sbjct  146  --NFDSKSTKQYATVGNTLQSITEG----NAQYA---VRNIIGNEAQSQLQSWLQRYGTA  196

Query  214  EVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLG  273
            E+NLQSGNNFDGSSLDFLLPFYD+E M+AF+Q+G+RYIDSRFT+NLGAGQRFF P+NMLG
Sbjct  197  ELNLQSGNNFDGSSLDFLLPFYDTEDMMAFSQIGGRYIDSRFTGNLGAGQRFFTPTNMLG  256

Query  274  YNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIR  333
            YNVFID+DFSG NTRLGIG+EYWRDYFKSS NGYFR++ WH+SYNK DYDERPANGFDIR
Sbjct  257  YNVFIDRDFSGSNTRLGIGAEYWRDYFKSSANGYFRLTNWHQSYNKEDYDERPANGFDIR  316

Query  334  FNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRH  393
             NGYLPS PALGAK++YEQYYGDNVALFN+D+LQSNPGA TVG+NYTP+PLVTMG+DYRH
Sbjct  317  VNGYLPSWPALGAKVMYEQYYGDNVALFNADQLQSNPGALTVGLNYTPVPLVTMGVDYRH  376

Query  394  GTGNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDI  453
            GTGNEND+LYS+Q+RYQ+DK+WSQQIEPQ V+ LRTLSGSRYDLVQRNNNI++EYKKQ++
Sbjct  377  GTGNENDVLYSLQLRYQLDKPWSQQIEPQNVEALRTLSGSRYDLVQRNNNIVMEYKKQNV  436

Query  454  LSLNIPHDINGTEHSTQKIQLIVKSKYGLDRIVWDDSALRsqggqiqhsgsqsAQDYQAI  513
            +SL +P++I+GT  S Q+IQ++VKSK +LD+I WDDSAL+ +GG+I+H+++++  DYQ +
Sbjct  437  ISLTLPQNISGTAGSLQNIQVVVKSKHALDHIAWDDSALKKNGGEIRHGSGKGLSDYQVL  496

Query  514  LPAYVQGGSNIYKVTARAYDRNGNSSNNVQLTITVLSNGQVVDQVGVTDFTADKTSAKAD  573
            +PAY  +G+N+Y+V ARAYD NGNSSNN  LT+TV + + +V++  VTDFT DK SA A+
Sbjct  497  MPAYNPSGNNVYQVMARAYDSNGNSSNNAPLTVTV-TPSSIVEKTEVTDFTHDKNSAAAN  555

Query  574  NADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANGKATVTLKSSTPGQVV  633
            N++ IT+TA V K G  Q NVPVSF+IVSGTATL++ S++TD+ G ATVTLKSSTPGQV+
Sbjct  556  NTEIITFTAKVTKGGSLQDNVPVSFSIVSGTATLSSTSSNTDSAGLATVTLKSSTPGQVI  615

Query  634  VSAKTAEMTSALNASAVIFFDQTKASITEIKADKTTAVANGKDAIKYTVKVMKNGQPVNN  693
            V+AKT+EM+S+LNA++V F +++ ASIT I  DKT+AVANG D I YT  VMKNG+P++N
Sbjct  616  VAAKTSEMSSPLNATPVNFVNESLASITSIEVDKTSAVANGIDRITYTATVMKNGNPLSN  675

Query  694  QSVTFSTNFGMFNGKSQTQATTGNDGRATITLTSSSAGKATVSATVSD-GAEVKATEVTF  752
            ++VTF+T+FG +   SQT  TT   G+A++TLTS++ GKA VSA  S+ ++ V+A EV F
Sbjct  676  ETVTFATSFGNL---SQTTVTTNAAGKASVTLTSANVGKAVVSAHTSEVATPVNAQEVEF  732

Query  753  FDELKID----NKVDIIGNNV  769
            +++L ID    +K   I+N +
Sbjct  733  IGNLSIDSITVDKTSAISNGI  753


 Score =  252 bits (943),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 174/382 (46%), Positives = 268/382 (71%), Gaps = 14/382 (3%)

Query  559   GVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANG  618
             ++T +  DKTSA A+  D ITYTATV KNG + +N  V+F   ++ + L+  +  T+A G
Sbjct  641   SITSIEVDKTSAVANGIDRITYTATVMKNGNPLSNETVTFA--TSFGNLSQTTVTTNAAG  698

Query  619   KATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASITEIKADKTTAVANGKDAI  678
             KA+VTL S+  G+ VVSA T+E+++++NA  V F++  + SI  I  DKT+A++NG D +
Sbjct  699   KASVTLTSANVGKAVVSAHTSEVATPVNAQEVEFIG--NLSIDSITVDKTSAISNGIDKF  756

Query  679   KYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGRATITLTSSSAGKATVSAT  738
              YTV V +N+QP  N++V F++ +G++   S +  TT++ G+A +TLTSS+AGKA V+AT
Sbjct  757   TYTVTVTRNSQPAANETVNFASTLGVL---SLSTLTTDSSGKAVVTLTSSTAGKALVTAT  813

Query  739   VSDGAEVKATEVTFFDELKIDN-KVDIIGNNVRGELPNIWLQYGQFKLKASGGDGTYSW-  796
              SDG + +A EV FF  L ID+ +V+IIG  V G LP+ WLQYGQ++LK +GG+GTY+W 
Sbjct  814   -SDGVQRQANEVEFFSPLSIDSGNVEIIGTGVSGALPSTWLQYGQIRLKVTGGNGTYTWK  872

Query  797   YSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKAPSYMIKVDKQA----YYA  852
              ++ ++ +   +SGK+TLN+K++  I  TSGD+QT  YTI+AP+ +I  D  +      A
Sbjct  873   SANASAASVEASSGKITLNSKAGTTITVTSGDNQTAIYTINAPTKLITADTSSRVTYAAA  932

Query  853   DAMSICKNLLPSTQTVLSDIYDSWGAANKYSHYSSMNSITAWIKQTSSEQRSGVSSTYNL  912
             +A       L++ Q+ L++++ +WGAAN Y HYS+  SITAW+KQTS+E  +G +STY+L
Sbjct  933   NATCAATGRLANDQSELAGVFATWGAANTYDHYSNAASITAWVKQTSAEIAAGAASTYDL  992

Query  913   ITQNPLPGVNVNTPNVYAVCVE  934
             + QNPL+ V+VN+++ +AVCV+
Sbjct  993   VRQNPLSNVKVNSASAFAVCVQ  1014

5) eae in NC_013008


> JQ747523|30|G28|397781899|AFO66294.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|26979..30023|eae|SESS1296_03625|intimin-like 
protein
Length=1014

 Score =  709 bits (2680),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 437/741 (59%), Positives = 592/741 (80%), Gaps = 26/741 (3%)

Query  35   QNSFANGENYFKLGSDSKLLTH-DSYQNRLFYTLKTGETVADLSKSQDINLSTIWSLNKH  93
             N++A+  NYF+++  SKL+T+ ++ +N+LFY +K GET+  ++KSQ++++STIWSLNK 
Sbjct  33   PNALAENTNYFQVSDISKLITNNETIKNQLFYVIKKGETIESIAKSQQVSVSTIWSLNKG  92

Query  94   LYSSESEMMKAAPGQQIILPLKKLPFEYSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVT  153
             +++ + M+ A+PG QI+LPL+K+  E  +      ++   ++G+  H++ +   S++  
Sbjct  93   RFATLNAMLDAPPGTQIVLPLNKIKAEKET-----RSATDVSAGLLLHSDPVKSSSAE--  145

Query  154  KSNMTDDKALNYaaqqaaslgsqlqsrslNGDYAKDTALGIAGNQASSQLQAWLQHYGTA  213
              N     + +YA+   +  +        N++YA      I GN+A SQLQ+WLQ+YGTA
Sbjct  146  --NFDSKSTKQYATVGNTLQSITEG----NAQYA---VRNIIGNEAQSQLQSWLQRYGTA  196

Query  214  EVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLG  273
            E+NLQSGNNFDGSSLDFLLPFYD+E M+AF+Q+G+RYIDSRFT+NLGAGQRFF P+NMLG
Sbjct  197  ELNLQSGNNFDGSSLDFLLPFYDTEDMMAFSQIGGRYIDSRFTGNLGAGQRFFTPTNMLG  256

Query  274  YNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIR  333
            YNVFID+DFSG NTRLGIG+EYWRDYFKSS NGYFR++ WH+SYNK DYDERPANGFDIR
Sbjct  257  YNVFIDRDFSGSNTRLGIGAEYWRDYFKSSANGYFRLTNWHQSYNKEDYDERPANGFDIR  316

Query  334  FNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRH  393
             NGYLPS PALGAK++YEQYYGDNVALFN+D+LQSNPGA TVG+NYTP+PLVTMG+DYRH
Sbjct  317  VNGYLPSWPALGAKVMYEQYYGDNVALFNADQLQSNPGALTVGLNYTPVPLVTMGVDYRH  376

Query  394  GTGNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDI  453
            GTGNEND+LYS+Q+RYQ+DK+WSQQIEPQ V+ LRTLSGSRYDLVQRNNNI++EYKKQ++
Sbjct  377  GTGNENDVLYSLQLRYQLDKPWSQQIEPQNVEALRTLSGSRYDLVQRNNNIVMEYKKQNV  436

Query  454  LSLNIPHDINGTEHSTQKIQLIVKSKYGLDRIVWDDSALRsqggqiqhsgsqsAQDYQAI  513
            +SL +P++I+GT  S Q+IQ++VKSK +LD+I WDDSAL+ +GG+I+H+++++  DYQ +
Sbjct  437  ISLTLPQNISGTAGSLQNIQVVVKSKHALDHIAWDDSALKKNGGEIRHGSGKGLSDYQVL  496

Query  514  LPAYVQGGSNIYKVTARAYDRNGNSSNNVQLTITVLSNGQVVDQVGVTDFTADKTSAKAD  573
            +PAY  +G+N+Y+V ARAYD NGNSSNN  LT+TV + + +V++  VTDFT DK SA A+
Sbjct  497  MPAYNPSGNNVYQVMARAYDSNGNSSNNAPLTVTV-TPSSIVEKTEVTDFTHDKNSAAAN  555

Query  574  NADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANGKATVTLKSSTPGQVV  633
            N++ IT+TA V K G  Q NVPVSF+IVSGTATL++ S++TD+ G ATVTLKSSTPGQV+
Sbjct  556  NTEIITFTAKVTKGGSLQDNVPVSFSIVSGTATLSSTSSNTDSAGLATVTLKSSTPGQVI  615

Query  634  VSAKTAEMTSALNASAVIFFDQTKASITEIKADKTTAVANGKDAIKYTVKVMKNGQPVNN  693
            V+AKT+EM+S+LNA++V F +++ ASIT I  DKT+AVANG D I YT  VMKNG+P++N
Sbjct  616  VAAKTSEMSSPLNATPVNFVNESLASITSIEVDKTSAVANGIDRITYTATVMKNGNPLSN  675

Query  694  QSVTFSTNFGMFNGKSQTQATTGNDGRATITLTSSSAGKATVSATVSD-GAEVKATEVTF  752
            ++VTF+T+FG +   SQT  TT   G+A++TLTS++ GKA VSA  S+ ++ V+A EV F
Sbjct  676  ETVTFATSFGNL---SQTTVTTNAAGKASVTLTSANVGKAVVSAHTSEVATPVNAQEVEF  732

Query  753  FDELKID----NKVDIIGNNV  769
            +++L ID    +K   I+N +
Sbjct  733  IGNLSIDSITVDKTSAISNGI  753


 Score =  252 bits (943),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 174/382 (46%), Positives = 268/382 (71%), Gaps = 14/382 (3%)

Query  559   GVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANG  618
             ++T +  DKTSA A+  D ITYTATV KNG + +N  V+F   ++ + L+  +  T+A G
Sbjct  641   SITSIEVDKTSAVANGIDRITYTATVMKNGNPLSNETVTFA--TSFGNLSQTTVTTNAAG  698

Query  619   KATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASITEIKADKTTAVANGKDAI  678
             KA+VTL S+  G+ VVSA T+E+++++NA  V F++  + SI  I  DKT+A++NG D +
Sbjct  699   KASVTLTSANVGKAVVSAHTSEVATPVNAQEVEFIG--NLSIDSITVDKTSAISNGIDKF  756

Query  679   KYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGRATITLTSSSAGKATVSAT  738
              YTV V +N+QP  N++V F++ +G++   S +  TT++ G+A +TLTSS+AGKA V+AT
Sbjct  757   TYTVTVTRNSQPAANETVNFASTLGVL---SLSTLTTDSSGKAVVTLTSSTAGKALVTAT  813

Query  739   VSDGAEVKATEVTFFDELKIDN-KVDIIGNNVRGELPNIWLQYGQFKLKASGGDGTYSW-  796
              SDG + +A EV FF  L ID+ +V+IIG  V G LP+ WLQYGQ++LK +GG+GTY+W 
Sbjct  814   -SDGVQRQANEVEFFSPLSIDSGNVEIIGTGVSGALPSTWLQYGQIRLKVTGGNGTYTWK  872

Query  797   YSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKAPSYMIKVDKQA----YYA  852
              ++ ++ +   +SGK+TLN+K++  I  TSGD+QT  YTI+AP+ +I  D  +      A
Sbjct  873   SANASAASVEASSGKITLNSKAGTTITVTSGDNQTAIYTINAPTKLITADTSSRVTYAAA  932

Query  853   DAMSICKNLLPSTQTVLSDIYDSWGAANKYSHYSSMNSITAWIKQTSSEQRSGVSSTYNL  912
             +A       L++ Q+ L++++ +WGAAN Y HYS+  SITAW+KQTS+E  +G +STY+L
Sbjct  933   NATCAATGRLANDQSELAGVFATWGAANTYDHYSNAASITAWVKQTSAEIAAGAASTYDL  992

Query  913   ITQNPLPGVNVNTPNVYAVCVE  934
             + QNPL+ V+VN+++ +AVCV+
Sbjct  993   VRQNPLSNVKVNSASAFAVCVQ  1014

6) CDCO157_4293 in NC_017906


> JQ747523|30|G28|397781899|AFO66294.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|26979..30023|eae|SESS1296_03625|intimin-like 
protein
Length=1014

 Score =  709 bits (2680),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 437/741 (59%), Positives = 592/741 (80%), Gaps = 26/741 (3%)

Query  35   QNSFANGENYFKLGSDSKLLTH-DSYQNRLFYTLKTGETVADLSKSQDINLSTIWSLNKH  93
             N++A+  NYF+++  SKL+T+ ++ +N+LFY +K GET+  ++KSQ++++STIWSLNK 
Sbjct  33   PNALAENTNYFQVSDISKLITNNETIKNQLFYVIKKGETIESIAKSQQVSVSTIWSLNKG  92

Query  94   LYSSESEMMKAAPGQQIILPLKKLPFEYSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVT  153
             +++ + M+ A+PG QI+LPL+K+  E  +      ++   ++G+  H++ +   S++  
Sbjct  93   RFATLNAMLDAPPGTQIVLPLNKIKAEKET-----RSATDVSAGLLLHSDPVKSSSAE--  145

Query  154  KSNMTDDKALNYaaqqaaslgsqlqsrslNGDYAKDTALGIAGNQASSQLQAWLQHYGTA  213
              N     + +YA+   +  +        N++YA      I GN+A SQLQ+WLQ+YGTA
Sbjct  146  --NFDSKSTKQYATVGNTLQSITEG----NAQYA---VRNIIGNEAQSQLQSWLQRYGTA  196

Query  214  EVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLG  273
            E+NLQSGNNFDGSSLDFLLPFYD+E M+AF+Q+G+RYIDSRFT+NLGAGQRFF P+NMLG
Sbjct  197  ELNLQSGNNFDGSSLDFLLPFYDTEDMMAFSQIGGRYIDSRFTGNLGAGQRFFTPTNMLG  256

Query  274  YNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIR  333
            YNVFID+DFSG NTRLGIG+EYWRDYFKSS NGYFR++ WH+SYNK DYDERPANGFDIR
Sbjct  257  YNVFIDRDFSGSNTRLGIGAEYWRDYFKSSANGYFRLTNWHQSYNKEDYDERPANGFDIR  316

Query  334  FNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRH  393
             NGYLPS PALGAK++YEQYYGDNVALFN+D+LQSNPGA TVG+NYTP+PLVTMG+DYRH
Sbjct  317  VNGYLPSWPALGAKVMYEQYYGDNVALFNADQLQSNPGALTVGLNYTPVPLVTMGVDYRH  376

Query  394  GTGNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDI  453
            GTGNEND+LYS+Q+RYQ+DK+WSQQIEPQ V+ LRTLSGSRYDLVQRNNNI++EYKKQ++
Sbjct  377  GTGNENDVLYSLQLRYQLDKPWSQQIEPQNVEALRTLSGSRYDLVQRNNNIVMEYKKQNV  436

Query  454  LSLNIPHDINGTEHSTQKIQLIVKSKYGLDRIVWDDSALRsqggqiqhsgsqsAQDYQAI  513
            +SL +P++I+GT  S Q+IQ++VKSK +LD+I WDDSAL+ +GG+I+H+++++  DYQ +
Sbjct  437  ISLTLPQNISGTAGSLQNIQVVVKSKHALDHIAWDDSALKKNGGEIRHGSGKGLSDYQVL  496

Query  514  LPAYVQGGSNIYKVTARAYDRNGNSSNNVQLTITVLSNGQVVDQVGVTDFTADKTSAKAD  573
            +PAY  +G+N+Y+V ARAYD NGNSSNN  LT+TV + + +V++  VTDFT DK SA A+
Sbjct  497  MPAYNPSGNNVYQVMARAYDSNGNSSNNAPLTVTV-TPSSIVEKTEVTDFTHDKNSAAAN  555

Query  574  NADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANGKATVTLKSSTPGQVV  633
            N++ IT+TA V K G  Q NVPVSF+IVSGTATL++ S++TD+ G ATVTLKSSTPGQV+
Sbjct  556  NTEIITFTAKVTKGGSLQDNVPVSFSIVSGTATLSSTSSNTDSAGLATVTLKSSTPGQVI  615

Query  634  VSAKTAEMTSALNASAVIFFDQTKASITEIKADKTTAVANGKDAIKYTVKVMKNGQPVNN  693
            V+AKT+EM+S+LNA++V F +++ ASIT I  DKT+AVANG D I YT  VMKNG+P++N
Sbjct  616  VAAKTSEMSSPLNATPVNFVNESLASITSIEVDKTSAVANGIDRITYTATVMKNGNPLSN  675

Query  694  QSVTFSTNFGMFNGKSQTQATTGNDGRATITLTSSSAGKATVSATVSD-GAEVKATEVTF  752
            ++VTF+T+FG +   SQT  TT   G+A++TLTS++ GKA VSA  S+ ++ V+A EV F
Sbjct  676  ETVTFATSFGNL---SQTTVTTNAAGKASVTLTSANVGKAVVSAHTSEVATPVNAQEVEF  732

Query  753  FDELKID----NKVDIIGNNV  769
            +++L ID    +K   I+N +
Sbjct  733  IGNLSIDSITVDKTSAISNGI  753


 Score =  252 bits (943),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 174/382 (46%), Positives = 268/382 (71%), Gaps = 14/382 (3%)

Query  559   GVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANG  618
             ++T +  DKTSA A+  D ITYTATV KNG + +N  V+F   ++ + L+  +  T+A G
Sbjct  641   SITSIEVDKTSAVANGIDRITYTATVMKNGNPLSNETVTFA--TSFGNLSQTTVTTNAAG  698

Query  619   KATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASITEIKADKTTAVANGKDAI  678
             KA+VTL S+  G+ VVSA T+E+++++NA  V F++  + SI  I  DKT+A++NG D +
Sbjct  699   KASVTLTSANVGKAVVSAHTSEVATPVNAQEVEFIG--NLSIDSITVDKTSAISNGIDKF  756

Query  679   KYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGRATITLTSSSAGKATVSAT  738
              YTV V +N+QP  N++V F++ +G++   S +  TT++ G+A +TLTSS+AGKA V+AT
Sbjct  757   TYTVTVTRNSQPAANETVNFASTLGVL---SLSTLTTDSSGKAVVTLTSSTAGKALVTAT  813

Query  739   VSDGAEVKATEVTFFDELKIDN-KVDIIGNNVRGELPNIWLQYGQFKLKASGGDGTYSW-  796
              SDG + +A EV FF  L ID+ +V+IIG  V G LP+ WLQYGQ++LK +GG+GTY+W 
Sbjct  814   -SDGVQRQANEVEFFSPLSIDSGNVEIIGTGVSGALPSTWLQYGQIRLKVTGGNGTYTWK  872

Query  797   YSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKAPSYMIKVDKQA----YYA  852
              ++ ++ +   +SGK+TLN+K++  I  TSGD+QT  YTI+AP+ +I  D  +      A
Sbjct  873   SANASAASVEASSGKITLNSKAGTTITVTSGDNQTAIYTINAPTKLITADTSSRVTYAAA  932

Query  853   DAMSICKNLLPSTQTVLSDIYDSWGAANKYSHYSSMNSITAWIKQTSSEQRSGVSSTYNL  912
             +A       L++ Q+ L++++ +WGAAN Y HYS+  SITAW+KQTS+E  +G +STY+L
Sbjct  933   NATCAATGRLANDQSELAGVFATWGAANTYDHYSNAASITAWVKQTSAEIAAGAASTYDL  992

Query  913   ITQNPLPGVNVNTPNVYAVCVE  934
             + QNPL+ V+VN+++ +AVCV+
Sbjct  993   VRQNPLSNVKVNSASAFAVCVQ  1014

7) eae in NC_013941


> JQ747523|30|G28|397781899|AFO66294.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|26979..30023|eae|SESS1296_03625|intimin-like 
protein
Length=1014

 Score =  708 bits (2677),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 437/741 (59%), Positives = 592/741 (80%), Gaps = 26/741 (3%)

Query  35   QNSFANGENYFKLGSDSKLLTH-DSYQNRLFYTLKTGETVADLSKSQDINLSTIWSLNKH  93
             N++A+  NYF+++  SKL+T+ ++ +N+LFY +K GET+  ++KSQ++++STIWSLNK 
Sbjct  33   PNALAENTNYFQVSDISKLITNNETIKNQLFYVIKKGETIESIAKSQQVSVSTIWSLNKG  92

Query  94   LYSSESEMMKAAPGQQIILPLKKLPFEYSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVT  153
             +++ + M+ A+PG QI+LPL+K+  E  +      ++   ++G+  H++ +   S++  
Sbjct  93   RFATLNAMLDAPPGTQIVLPLNKIKAEKET-----RSATDVSAGLLLHSDPVKSSSAE--  145

Query  154  KSNMTDDKALNYaaqqaaslgsqlqsrslNGDYAKDTALGIAGNQASSQLQAWLQHYGTA  213
              N     + +YA+   +  +        N++YA      I GN+A SQLQ+WLQ+YGTA
Sbjct  146  --NFDSKSTKQYATVGNTLQSITEG----NAQYA---VRNIIGNEAQSQLQSWLQRYGTA  196

Query  214  EVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLG  273
            E+NLQSGNNFDGSSLDFLLPFYD+E M+AF+Q+G+RYIDSRFT+NLGAGQRFF P+NMLG
Sbjct  197  ELNLQSGNNFDGSSLDFLLPFYDTEDMMAFSQIGGRYIDSRFTGNLGAGQRFFTPTNMLG  256

Query  274  YNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIR  333
            YNVFID+DFSG NTRLGIG+EYWRDYFKSS NGYFR++ WH+SYNK DYDERPANGFDIR
Sbjct  257  YNVFIDRDFSGSNTRLGIGAEYWRDYFKSSANGYFRLTNWHQSYNKEDYDERPANGFDIR  316

Query  334  FNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRH  393
             NGYLPS PALGAK++YEQYYGDNVALFN+D+LQSNPGA TVG+NYTP+PLVTMG+DYRH
Sbjct  317  VNGYLPSWPALGAKVMYEQYYGDNVALFNADQLQSNPGALTVGLNYTPVPLVTMGVDYRH  376

Query  394  GTGNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDI  453
            GTGNEND+LYS+Q+RYQ+DK+WSQQIEPQ V+ LRTLSGSRYDLVQRNNNI++EYKKQ++
Sbjct  377  GTGNENDVLYSLQLRYQLDKPWSQQIEPQNVEALRTLSGSRYDLVQRNNNIVMEYKKQNV  436

Query  454  LSLNIPHDINGTEHSTQKIQLIVKSKYGLDRIVWDDSALRsqggqiqhsgsqsAQDYQAI  513
            +SL +P++I+GT  S Q+IQ++VKSK +LD+I WDDSAL+ +GG+I+H+++++  DYQ +
Sbjct  437  ISLTLPQNISGTAGSLQNIQVVVKSKHALDHIAWDDSALKKNGGEIRHGSGKGLSDYQVL  496

Query  514  LPAYVQGGSNIYKVTARAYDRNGNSSNNVQLTITVLSNGQVVDQVGVTDFTADKTSAKAD  573
            +PAY  +G+N+Y+V ARAYD NGNSSNN  LT+TV + + +V++  VTDFT DK SA A+
Sbjct  497  MPAYNPSGNNVYQVMARAYDSNGNSSNNAPLTVTV-TPSSIVEKTEVTDFTHDKNSAAAN  555

Query  574  NADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANGKATVTLKSSTPGQVV  633
            N++ IT+TA V K G  Q NVPVSF+IVSGTATL++ S++TD+ G ATVTLKSSTPGQV+
Sbjct  556  NTEIITFTAKVTKGGSLQDNVPVSFSIVSGTATLSSTSSNTDSAGLATVTLKSSTPGQVI  615

Query  634  VSAKTAEMTSALNASAVIFFDQTKASITEIKADKTTAVANGKDAIKYTVKVMKNGQPVNN  693
            V+AKT+EM+S+LNA++V F +++ ASIT I  DKT+AVANG D I YT  VMKNG+P++N
Sbjct  616  VAAKTSEMSSPLNATPVNFVNESLASITSIEVDKTSAVANGIDRITYTATVMKNGNPLSN  675

Query  694  QSVTFSTNFGMFNGKSQTQATTGNDGRATITLTSSSAGKATVSATVSD-GAEVKATEVTF  752
            ++VTF+T+FG +   SQT  TT   G+A++TLTS++ GKA VSA  S+ ++ V+A EV F
Sbjct  676  ETVTFATSFGNL---SQTTVTTNAAGKASVTLTSANVGKAVVSAHTSEVATPVNAQEVEF  732

Query  753  FDELKID----NKVDIIGNNV  769
            +++L ID    +K   I+N +
Sbjct  733  IGNLSIDSITVDKTSAISNGI  753


 Score =  246 bits (917),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 174/382 (46%), Positives = 269/382 (71%), Gaps = 14/382 (3%)

Query  559   GVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANG  618
             ++T +  DKTSA A+  D ITYTATV KNG + +N  V+F   ++ + L+  +  T+A G
Sbjct  641   SITSIEVDKTSAVANGIDRITYTATVMKNGNPLSNETVTFA--TSFGNLSQTTVTTNAAG  698

Query  619   KATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASITEIKADKTTAVANGKDAI  678
             KA+VTL S+  G+ VVSA T+E+++++NA  V F++  + SI  I  DKT+A++NG D +
Sbjct  699   KASVTLTSANVGKAVVSAHTSEVATPVNAQEVEFIG--NLSIDSITVDKTSAISNGIDKF  756

Query  679   KYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGRATITLTSSSAGKATVSAT  738
              YTV V +N+QP  N++V F++ +G++   S +  TT++ G+A +TLTSS+AGKA V+AT
Sbjct  757   TYTVTVTRNSQPAANETVNFASTLGVL---SLSTLTTDSSGKAVVTLTSSTAGKALVTAT  813

Query  739   VSDGAEVKATEVTFFDELKIDN-KVDIIGNNVRGELPNIWLQYGQFKLKASGGDGTYSW-  796
              SDG + +A EV FF  L ID+ +V+IIG  V G LP+ WLQYGQ++LK +GG+GTY+W 
Sbjct  814   -SDGVQRQANEVEFFSPLSIDSGNVEIIGTGVSGALPSTWLQYGQIRLKVTGGNGTYTWK  872

Query  797   YSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKAPSYMIKVDKQA----YYA  852
              ++ ++ +   +SGK+TLN+K++  I  TSGD+QT  YTI+AP+ +I  D  +      A
Sbjct  873   SANASAASVEASSGKITLNSKAGTTITVTSGDNQTAIYTINAPTKLITADTSSRVTYAAA  932

Query  853   DAMSICKNLLPSTQTVLSDIYDSWGAANKYSHYSSMNSITAWIKQTsseqssgvssTYNL  912
             +A       L++ Q+ L++++ +WGAAN Y HYS+  SITAW+KQTS+E ++G +STY+L
Sbjct  933   NATCAATGRLANDQSELAGVFATWGAANTYDHYSNAASITAWVKQTSAEIAAGAASTYDL  992

Query  913   ITQNPLPRVNVNTPNVYAVCVE  934
             + QNPL+ V+VN+++ +AVCV+
Sbjct  993   VRQNPLSNVKVNSASAFAVCVQ  1014

8) ECO55CA74_21185 in NC_017656


> JQ747523|30|G28|397781899|AFO66294.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|26979..30023|eae|SESS1296_03625|intimin-like 
protein
Length=1014

 Score =  708 bits (2677),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 437/741 (59%), Positives = 592/741 (80%), Gaps = 26/741 (3%)

Query  35   QNSFANGENYFKLGSDSKLLTH-DSYQNRLFYTLKTGETVADLSKSQDINLSTIWSLNKH  93
             N++A+  NYF+++  SKL+T+ ++ +N+LFY +K GET+  ++KSQ++++STIWSLNK 
Sbjct  33   PNALAENTNYFQVSDISKLITNNETIKNQLFYVIKKGETIESIAKSQQVSVSTIWSLNKG  92

Query  94   LYSSESEMMKAAPGQQIILPLKKLPFEYSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVT  153
             +++ + M+ A+PG QI+LPL+K+  E  +      ++   ++G+  H++ +   S++  
Sbjct  93   RFATLNAMLDAPPGTQIVLPLNKIKAEKET-----RSATDVSAGLLLHSDPVKSSSAE--  145

Query  154  KSNMTDDKALNYaaqqaaslgsqlqsrslNGDYAKDTALGIAGNQASSQLQAWLQHYGTA  213
              N     + +YA+   +  +        N++YA      I GN+A SQLQ+WLQ+YGTA
Sbjct  146  --NFDSKSTKQYATVGNTLQSITEG----NAQYA---VRNIIGNEAQSQLQSWLQRYGTA  196

Query  214  EVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLG  273
            E+NLQSGNNFDGSSLDFLLPFYD+E M+AF+Q+G+RYIDSRFT+NLGAGQRFF P+NMLG
Sbjct  197  ELNLQSGNNFDGSSLDFLLPFYDTEDMMAFSQIGGRYIDSRFTGNLGAGQRFFTPTNMLG  256

Query  274  YNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIR  333
            YNVFID+DFSG NTRLGIG+EYWRDYFKSS NGYFR++ WH+SYNK DYDERPANGFDIR
Sbjct  257  YNVFIDRDFSGSNTRLGIGAEYWRDYFKSSANGYFRLTNWHQSYNKEDYDERPANGFDIR  316

Query  334  FNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRH  393
             NGYLPS PALGAK++YEQYYGDNVALFN+D+LQSNPGA TVG+NYTP+PLVTMG+DYRH
Sbjct  317  VNGYLPSWPALGAKVMYEQYYGDNVALFNADQLQSNPGALTVGLNYTPVPLVTMGVDYRH  376

Query  394  GTGNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDI  453
            GTGNEND+LYS+Q+RYQ+DK+WSQQIEPQ V+ LRTLSGSRYDLVQRNNNI++EYKKQ++
Sbjct  377  GTGNENDVLYSLQLRYQLDKPWSQQIEPQNVEALRTLSGSRYDLVQRNNNIVMEYKKQNV  436

Query  454  LSLNIPHDINGTEHSTQKIQLIVKSKYGLDRIVWDDSALRsqggqiqhsgsqsAQDYQAI  513
            +SL +P++I+GT  S Q+IQ++VKSK +LD+I WDDSAL+ +GG+I+H+++++  DYQ +
Sbjct  437  ISLTLPQNISGTAGSLQNIQVVVKSKHALDHIAWDDSALKKNGGEIRHGSGKGLSDYQVL  496

Query  514  LPAYVQGGSNIYKVTARAYDRNGNSSNNVQLTITVLSNGQVVDQVGVTDFTADKTSAKAD  573
            +PAY  +G+N+Y+V ARAYD NGNSSNN  LT+TV + + +V++  VTDFT DK SA A+
Sbjct  497  MPAYNPSGNNVYQVMARAYDSNGNSSNNAPLTVTV-TPSSIVEKTEVTDFTHDKNSAAAN  555

Query  574  NADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANGKATVTLKSSTPGQVV  633
            N++ IT+TA V K G  Q NVPVSF+IVSGTATL++ S++TD+ G ATVTLKSSTPGQV+
Sbjct  556  NTEIITFTAKVTKGGSLQDNVPVSFSIVSGTATLSSTSSNTDSAGLATVTLKSSTPGQVI  615

Query  634  VSAKTAEMTSALNASAVIFFDQTKASITEIKADKTTAVANGKDAIKYTVKVMKNGQPVNN  693
            V+AKT+EM+S+LNA++V F +++ ASIT I  DKT+AVANG D I YT  VMKNG+P++N
Sbjct  616  VAAKTSEMSSPLNATPVNFVNESLASITSIEVDKTSAVANGIDRITYTATVMKNGNPLSN  675

Query  694  QSVTFSTNFGMFNGKSQTQATTGNDGRATITLTSSSAGKATVSATVSD-GAEVKATEVTF  752
            ++VTF+T+FG +   SQT  TT   G+A++TLTS++ GKA VSA  S+ ++ V+A EV F
Sbjct  676  ETVTFATSFGNL---SQTTVTTNAAGKASVTLTSANVGKAVVSAHTSEVATPVNAQEVEF  732

Query  753  FDELKID----NKVDIIGNNV  769
            +++L ID    +K   I+N +
Sbjct  733  IGNLSIDSITVDKTSAISNGI  753


 Score =  246 bits (917),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 174/382 (46%), Positives = 269/382 (71%), Gaps = 14/382 (3%)

Query  559   GVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNIVSGTATLGANSAKTDANG  618
             ++T +  DKTSA A+  D ITYTATV KNG + +N  V+F   ++ + L+  +  T+A G
Sbjct  641   SITSIEVDKTSAVANGIDRITYTATVMKNGNPLSNETVTFA--TSFGNLSQTTVTTNAAG  698

Query  619   KATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASITEIKADKTTAVANGKDAI  678
             KA+VTL S+  G+ VVSA T+E+++++NA  V F++  + SI  I  DKT+A++NG D +
Sbjct  699   KASVTLTSANVGKAVVSAHTSEVATPVNAQEVEFIG--NLSIDSITVDKTSAISNGIDKF  756

Query  679   KYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGRATITLTSSSAGKATVSAT  738
              YTV V +N+QP  N++V F++ +G++   S +  TT++ G+A +TLTSS+AGKA V+AT
Sbjct  757   TYTVTVTRNSQPAANETVNFASTLGVL---SLSTLTTDSSGKAVVTLTSSTAGKALVTAT  813

Query  739   VSDGAEVKATEVTFFDELKIDN-KVDIIGNNVRGELPNIWLQYGQFKLKASGGDGTYSW-  796
              SDG + +A EV FF  L ID+ +V+IIG  V G LP+ WLQYGQ++LK +GG+GTY+W 
Sbjct  814   -SDGVQRQANEVEFFSPLSIDSGNVEIIGTGVSGALPSTWLQYGQIRLKVTGGNGTYTWK  872

Query  797   YSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKAPSYMIKVDKQA----YYA  852
              ++ ++ +   +SGK+TLN+K++  I  TSGD+QT  YTI+AP+ +I  D  +      A
Sbjct  873   SANASAASVEASSGKITLNSKAGTTITVTSGDNQTAIYTINAPTKLITADTSSRVTYAAA  932

Query  853   DAMSICKNLLPSTQTVLSDIYDSWGAANKYSHYSSMNSITAWIKQTsseqssgvssTYNL  912
             +A       L++ Q+ L++++ +WGAAN Y HYS+  SITAW+KQTS+E ++G +STY+L
Sbjct  933   NATCAATGRLANDQSELAGVFATWGAANTYDHYSNAASITAWVKQTSAEIAAGAASTYDL  992

Query  913   ITQNPLPRVNVNTPNVYAVCVE  934
             + QNPL+ V+VN+++ +AVCV+
Sbjct  993   VRQNPLSNVKVNSASAFAVCVQ  1014

9) eaeA in NC_011601


> JQ747523|30|G28|397781899|AFO66294.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|26979..30023|eae|SESS1296_03625|intimin-like 
protein
Length=1014

 Score =  707 bits (2674),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 447/764 (59%), Positives = 602/764 (79%), Gaps = 22/764 (2%)

Query  1    MITHGFYARTRHKHKLKKTFIMLSAGLGLFFYVN-QNSFANGENYFKLGSDSKLLTHN-S  58
            M T +F  R  +K K+    +ML+++   + +    N++A+  NYF+++  SKL+T+N +
Sbjct  1    MNTTDFPVRFPRKSKIALLSLMLTGS---YVFGTMPNALAENTNYFQVSDISKLITNNET  57

Query  59   YQNRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAAPGQQIILPLKKLP  118
             +N+LFY +K GET+  ++KSQ++++STIWSLNK  +++ + M+ A+PG QI+LPL+K+ 
Sbjct  58   IKNQLFYVIKKGETIESIAKSQQVSVSTIWSLNKGRFATLNAMLDAPPGTQIVLPLNKIK  117

Query  119  FEYSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYaaqqaaslgsqlq  178
             E  +      ++   ++G+  H++ +   S++    N     + +YA+   +  +    
Sbjct  118  AEKET-----RSATDVSAGLLLHSDPVKSSSAE----NFDSKSTKQYATVGNTLQSITEG  168

Query  179  srslNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSE  238
                N++YA      I GN+A SQLQ+WLQ+YGTAE+NLQSGNNFDGSSLDFLLPFYD+E
Sbjct  169  ----NAQYA---VRNIIGNEAQSQLQSWLQRYGTAELNLQSGNNFDGSSLDFLLPFYDTE  221

Query  239  KMLAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWRD  298
             M+AF+Q+G+RYIDSRFT+NLGAGQRFF P NMLGYNVFID+DFSG NTRLGIG+EYWRD
Sbjct  222  DMMAFSQIGGRYIDSRFTGNLGAGQRFFTPTNMLGYNVFIDRDFSGSNTRLGIGAEYWRD  281

Query  299  YFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDNV  358
            YFKSS NGYFR++ WH+SYNK DYDERPANGFDIR NGYLPS PALGAK+MYEQYYGDNV
Sbjct  282  YFKSSANGYFRLTNWHQSYNKEDYDERPANGFDIRVNGYLPSWPALGAKVMYEQYYGDNV  341

Query  359  ALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKPWSQQ  418
            ALFN+D+LQSNPGA TVG+NYTP+PLVTMG+DYRHGTGNEND+LYS+Q+RYQ+DKPWSQQ
Sbjct  342  ALFNADQLQSNPGALTVGLNYTPVPLVTMGVDYRHGTGNENDVLYSLQLRYQLDKPWSQQ  401

Query  419  IEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTERSTQKIQLIVKS  478
            IEPQ V+ LRTLSGSRYDLVQRNNNI++EYKKQ+++SL +P++I+GT  S Q+IQ++VKS
Sbjct  402  IEPQNVEALRTLSGSRYDLVQRNNNIVMEYKKQNVISLTLPQNISGTAGSLQNIQVVVKS  461

Query  479  KYGLDRIVWDDSALRsqggqiqhsgsqsAQDYQAILPAYVQGGSNVYKVTARAYDRNGNS  538
            K +LD+I WDDSAL+ +GG+I+H+++++  DYQ ++PAY  +G+NVY+V ARAYD NGNS
Sbjct  462  KHALDHIAWDDSALKKNGGEIRHGSGKGLSDYQVLMPAYNPSGNNVYQVMARAYDSNGNS  521

Query  539  SNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSF  598
            SNN  LT+TV + + +V++  VTDFT DK SA A+ TE IT+TA V K G  Q NVPVSF
Sbjct  522  SNNAPLTVTV-TPSSIVEKTEVTDFTHDKNSAAANNTEIITFTAKVTKGGSLQDNVPVSF  580

Query  599  NIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKA  658
            +IVSGTA LS+ S+NT+++G ATVTLKS  PGQV+V+AKT+EM+S+LNA +V FV+++ A
Sbjct  581  SIVSGTATLSSTSSNTDSAGLATVTLKSSTPGQVIVAAKTSEMSSPLNATPVNFVNESLA  640

Query  659  SITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYA  718
            SIT I  DKT+AVANG D ITYT  VMK ++P+SN+ VTF+T++G+LS++T  T++ G A
Sbjct  641  SITSIEVDKTSAVANGIDRITYTATVMKNGNPLSNETVTFATSFGNLSQTTVTTNAAGKA  700

Query  719  KVTLTSTTPGKSLvsarvsdvavdvKAPEVEFFTTLTIDDGNIE  762
             VTLTS+  GK++VSA+ S+VA  V+A EVEF+  L+ID   ++
Sbjct  701  SVTLTSANVGKAVVSAHTSEVATPVNAQEVEFIGNLSIDSITVD  744


 Score =  278 bits (1041),  Expect = 7e-76, Method: Compositional matrix adjust.
 Identities = 193/381 (51%), Positives = 278/381 (73%), Gaps = 7/381 (1%)

Query  559   GVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSG  618
             ++T +  DKTSA A+G + ITYTATV KNG + +N  V+F    G   LS  +  TN++G
Sbjct  641   SITSIEVDKTSAVANGIDRITYTATVMKNGNPLSNETVTFATSFGN--LSQTTVTTNAAG  698

Query  619   KATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAI  678
             KA+VTL S + G+ VVSA T+E+++++NA+ V F++  + SI  I  DKT+A++NG D +
Sbjct  699   KASVTLTSANVGKAVVSAHTSEVATPVNAQEVEFIG--NLSIDSITVDKTSAISNGIDKF  756

Query  679   TYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLvsarvsd  738
             TYTV V +  +P +N+ V F++TLG LS ST  TD++G A VTLTS+T+GK+LV+A   +
Sbjct  757   TYTVTVTRNSQPAANETVNFASTLGVLSLSTLTTDSSGKAVVTLTSSTAGKALVTATSDG  816

Query  739   vavdvKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSA  798
             V    +A EVEFF+ L+ID GN+EI+GTGV G LP+ WLQYGQ+ LK +GGNG YTW+SA
Sbjct  817   VQR--QANEVEFFSPLSIDSGNVEIIGTGVSGALPSTWLQYGQIRLKVTGGNGTYTWKSA  874

Query  799   NPAIASVDASSGQVTLKEKGTTTISVISSDNQTATYTIATPNSLIVPNMSKRVTYNDAVN  858
             N++ ASV+ASSG++TL+ K+ TTI+V S+DNQTA YTI +P  LI ++ S RVT   A N
Sbjct  875   NASAASVEASSGKITLNSKAGTTITVTSGDNQTAIYTINAPTKLITADTSSRVT-YAAAN  933

Query  859   TCKNFGGKLPSSQNELENVFKAWGAANKYEYYKSSQTIISWVQQTAQDAKSGVASTYDLV  918
             +     G+L++ Q+EL  VF +WGAAN Y+ Y ++ +I +WV+QT+ +  +G ASTYDLV
Sbjct  934   ATCAATGRLANDQSELAGVFATWGAANTYDHYSNAASITAWVKQTSAEIAAGAASTYDLV  993

Query  919   KQNPLNNIKASESNAYATCVK  939
             +QNPL+N+K + ++A+A CV+
Sbjct  994   RQNPLSNVKVNSASAFAVCVQ  1014


 Score = 47.1 bits (159),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 33/87 (38%), Positives = 59/87 (68%), Gaps = 2/87 (2%)

Query  555  VDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANT  614
            ++++++  +T DKTSA ++G + +TYT TV +N+ + AN  V+F   S  +VLS ++  T
Sbjct  733  IGNLSIDSITVDKTSAISNGIDKFTYTVTVTRNSQPAANETVNFA--STLGVLSLSTLTT  790

Query  615  NGSGKATVTLKSDKPGQVVVSAKTAEM  641
            ++SGKA VTL S  +G+ +V+A +  +
Sbjct  791  DSSGKAVVTLTSSTAGKALVTATSDGV  817

10) eae in NC_013364


> JQ747523|30|G28|397781899|AFO66294.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1296|-|26979..30023|eae|SESS1296_03625|intimin-like 
protein
Length=1014

 Score =  703 bits (2658),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/1034 (48%), Positives = 695/1034 (68%), Gaps = 119/1034 (11%)

Query  1     MITHGFYARTRHKHKLKKTFIMLSAGLGLFFYVN-QNSFANGENYFKLSSDSKLLTQN-V  58
             M T +F  R  +K K+    +ML+++   + +    N++A+  NYF++S  SKL+T+N  
Sbjct  1     MNTTDFPVRFPRKSKIALLSLMLTGS---YVFGTMPNALAENTNYFQVSDISKLITNNET  57

Query  59    AQDRLFYTLKTGETVssisksqgislsVIWSLNKHLYSSESEMLKAAPGQQIILPLKKLS  118
              +++LFY +K GET+ SI+KSQ +S+S IWSLNK  +++ + ML A+PG QI+LPL+K+ 
Sbjct  58    IKNQLFYVIKKGETIESIAKSQQVSVSTIWSLNKGRFATLNAMLDAPPGTQIVLPLNKIK  117

Query  119   VEYGalpvlgsapvvaaggvagHTNKMTKMSPDATQSNMTDDKALNYTaqqaaslgsqlq  178
              E         ++   ++G+  H++ +   S++  +S+ T +    Y++   +  +    
Sbjct  118   AE-----KETRSATDVSAGLLLHSDPVKSSSAENFDSKSTKQ----YATVGNTLQSITEG  168

Query  179   srslHGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSE  238
                 +++YA      I GN+A SQLQ+WLQ+YGTAE+NLQSGNNFDGSSLDFLLPFYD+E
Sbjct  169   ----NAQYA---VRNIIGNEAQSQLQSWLQRYGTAELNLQSGNNFDGSSLDFLLPFYDTE  221

Query  239   KMLAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWRD  298
              M+AF+Q+G+RYIDSRFT+NLGAGQRFF P NMLGYNVFID+DFSG NTRLGIG+EYWRD
Sbjct  222   DMMAFSQIGGRYIDSRFTGNLGAGQRFFTPTNMLGYNVFIDRDFSGSNTRLGIGAEYWRD  281

Query  299   YFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDNV  358
             YFKSS NGYFR++ WH+SYNK DYDERPANGFDIR NGYLPS PALGAK+MYEQYYGDNV
Sbjct  282   YFKSSANGYFRLTNWHQSYNKEDYDERPANGFDIRVNGYLPSWPALGAKVMYEQYYGDNV  341

Query  359   ALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQLRYQFDKPWSQQ  418
             ALFN+D+LQSNPGA TVG+NYTP+PLVTMG+DYRHGTGNEND+LYS+QLRYQ+DKPWSQQ
Sbjct  342   ALFNADQLQSNPGALTVGLNYTPVPLVTMGVDYRHGTGNENDVLYSLQLRYQLDKPWSQQ  401

Query  419   IEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKS  478
             IEPQ V+ LRTLSGSRYDLVQRNNNI++EYKKQ+++SL +P++I+GT  S Q+IQ++VKS
Sbjct  402   IEPQNVEALRTLSGSRYDLVQRNNNIVMEYKKQNVISLTLPQNISGTAGSLQNIQVVVKS  461

Query  479   KYGLDRIVWDDSALRsqggqiqhsgsqsAQDYQAILPAYVQGGSNIYKVTARAYDRNGNS  538
             K +LD+I WDDSAL+ +GG+I+H+++++  DYQ ++PAY  +G+N+Y+V ARAYD NGNS
Sbjct  462   KHALDHIAWDDSALKKNGGEIRHGSGKGLSDYQVLMPAYNPSGNNVYQVMARAYDSNGNS  521

Query  539   SNNVQLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVTQANVPVSF  598
             SNN  LT+TV + + +V++  VTDFT DK SA A+ TE IT+TA V K G  Q NVPVSF
Sbjct  522   SNNAPLTVTV-TPSSIVEKTEVTDFTHDKNSAAANNTEIITFTAKVTKGGSLQDNVPVSF  580

Query  599   NIVSGTAT------------LGANSATTDANGKATVTLKSSTPGQVVVSAKTAEMTSALN  646
             +IVSGTAT            L++ +  + + G+  V+ K+S  +  + ++    +  +L 
Sbjct  581   SIVSGTATLSSTSSNTDSAGLATVTLKSSTPGQVIVAAKTSEMSSPLNATPVNFVNESLA  640

Query  647   ASAVIFVEQTKA------------------------------SITEIKADKTTAVANGND  676
             + + I V++T A                              S+ ++     T+ A G+ 
Sbjct  641   SITSIEVDKTSAVANGIDRITYTATVMKNGNPLSNETVTFATSFGNLSQTTVTTNAAGKA  700

Query  677   AVTYT-VKVMKE---------GQPVQGHSVAFTTNFGM-----------------FN-GK  708
             +VT T  +V K          + PV+++ V F  N+++                 F    
Sbjct  701   SVTLTSANVGKAVVSAHTSEVATPVNAQEVEFIGNLSIDSITVDKTSAISNGIDKFTYTV  760

Query  709   SQTQNATTGSDGRATI----------TLTSSSAGKATVS-----------ATVSGGNDVK  747
             + T+N+  +++    +          TLT+ S+GKA V+           ++ S+G + +
Sbjct  761   TVTRNSQPAANETVNFASTLGVLSLSTLTTDSSGKAVVTLTSSTAGKALVTATSDGVQRQ  820

Query  748   APEVTFFDGLKIDN-KVDILGKNVTGDLPNIWLQYGQFKLKVSGGNGTYSWH-SENTNIA  805
             A EV FF  L ID+ +V+I+G  V+G LP+ WLQYGQ++LKV+GGNGTY+W  ++ +  +
Sbjct  821   ANEVEFFSPLSIDSGNVEIIGTGVSGALPSTWLQYGQIRLKVTGGNGTYTWKSANASAAS  880

Query  806   TVDESGKVTLKGKGTAVINVTSGDKQTVSYTIKAPNYMIRVGNKASYANAMSFCGNL---  862
                 SGK+TL++K+ + I VTSGD+QT  YTI+AP  +I  +  +  + A +        
Sbjct  881   VEASSGKITLNSKAGTTITVTSGDNQTAIYTINAPTKLITADTSSRVTYAAANATCAATG  940

Query  863   -LPSSQTVLSNVYNSWGPANGYDHYRSMQSITAWITQTEADKISGVSTTYDLITQNPHKD  921
              L++ Q+ L+ V+ +WG+AN YDHY +  SITAW+ QT A+  +G ++TYDL+ QNP  +
Sbjct  941   RLANDQSELAGVFATWGAANTYDHYSNAASITAWVKQTSAEIAAGAASTYDLVRQNPLSN  1000

Query  922   VTLNAPNVYAVCVE  935
             V +N+++ +AVCV+
Sbjct  1001  VKVNSASAFAVCVQ  1014