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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpF gene of AY597278

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) HrpF
( YP_234290.1 )

type III secretion protein HrpF

NC_007005
(Pseudomonas syringae B728a)

4e-23

2) hrpF
( YP_273537.1 )

type III secretion component protein HrpF

NC_005773
(Pseudomonas syringae 1448A)

8e-23

3) hrpF
( NP_791214.1 )

type III secretion protein HrpF

NC_004578
(Pseudomonas syringae DC3000)

5e-10

• Sequence Alignments

1) HrpF in NC_007005


> AY597278|30|G30|51103062|AAT96208.1|Pseudomonas_viridiflava_PNA3.3a|-|26959..27183|hrpF|-|HrpF
Length=74

 Score =  100 bits (364),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 60/74 (82%), Positives = 71/74 (96%), Gaps = 0/74 (0%)

Query  1   MINFKSLQNNLDSTLTRALSDVDDVLDGGNGHFTADDIDAFSEASQQAAVSSNIADQCQQ  60
           MI+FKSLQNNLD+T TRA+S++DDVL+GGNG +TADDIDAFSEASQQ AV+SN+ADQCQQ
Sbjct  1   MISFKSLQNNLDTTTTRAMSQIDDVLGGGNGPITADDIDAFSEASQQVAVASNVADQCQQ  60

Query  61  AGYKMTKNVIDGFQ  74
           A+YK+TKNVIDGFQ
Sbjct  61  ASYKLTKNVIDGFQ  74

2) hrpF in NC_005773


> AY597278|30|G30|51103062|AAT96208.1|Pseudomonas_viridiflava_PNA3.3a|-|26959..27183|hrpF|-|HrpF
Length=74

 Score =   99 bits (360),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 59/74 (80%), Positives = 69/74 (94%), Gaps = 0/74 (0%)

Query  1   MISFKSLQNNLDSTLNRALSDVDDVLEGGNGHFTADDIDAFGEASQQAAVSSNIADQCQQ  60
           MISFKSLQNNLD+T  RA+S++DDVL GGNG +TADDIDAF+EASQQ AV+SN+ADQCQQ
Sbjct  1   MISFKSLQNNLDTTTTRAMSQIDDVLGGGNGPITADDIDAFSEASQQVAVASNVADQCQQ  60

Query  61  AGYKMTKNVIDGFQ  74
           A+YK+TKNVIDGFQ
Sbjct  61  ASYKLTKNVIDGFQ  74

3) hrpF in NC_004578


> AY597278|30|G30|51103062|AAT96208.1|Pseudomonas_viridiflava_PNA3.3a|-|26959..27183|hrpF|-|HrpF
Length=74

 Score = 57.4 bits (198),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 30/74 (41%), Positives = 52/74 (71%), Gaps = 0/74 (0%)

Query  1   MISFNSLQRHLDNSVSRAHTNMDQAAMEASESGTVEDLQAFNDAQQQVDVAGIAVNECLR  60
           MISF+SLQ +LD + +RA +++D+    ++ + T +D++AF++A QQV VA+   ++C +
Sbjct  1   MISFKSLQNNLDTTTTRAMSQIDDVLGGGNGPITADDIDAFSEASQQVAVASNVADQCQQ  60

Query  61  AKHGINKAVIDGIQ  74
           A   + K VIDG+Q
Sbjct  61  ASYKLTKNVIDGFQ  74