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Homologs of unnamed gene of AF311901

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) eae
( YP_003366493.1 )

intimin

NC_013716
(Citrobacter rodentium ICC168)

0.0

100

2) eae
( YP_003232162.1 )

intimin

NC_013361
(Escherichia coli 11368)

0.0

3) eaeA
( YP_002331401.1 )

intimin EaeA

NC_011601
(Escherichia coli E2348/69)

0.0

4) ECH74115_5054
( YP_002273158.1 )

intimin C-type lectin domain-containing protein

NC_011353
(Escherichia coli EC4115)

0.0

5) eae
( NP_290259.1 )

intimin adherence protein

NC_002655
(Escherichia coli EDL933)

0.0

6) ECs4559
( NP_312586.1 )

gamma intimin

NC_002695
(Escherichia coli Sakai)

0.0

7) eae
( YP_003080471.1 )

intimin adherence protein

NC_013008
(Escherichia coli TW14359)

0.0

8) CDCO157_4293
( YP_006315159.1 )

gamma intimin

NC_017906
(Escherichia coli Xuzhou21)

0.0

9) eae
( YP_003236079.1 )

theta intimin

NC_013364
(Escherichia coli 11128)

0.0

10) eae
( YP_003501865.1 )

Gamma intimin

NC_013941
(Escherichia coli CB9615)

0.0

11) ECO55CA74_21185
( YP_006161342.1 )

Gamma intimin

NC_017656
(Escherichia coli RM12579)

0.0

12) eae
( YP_003223466.1 )

intimin epsilon

NC_013353
(Escherichia coli 12009)

0.0

• Sequence Alignments

1) eae in NC_013716


> AF311901|30|G30|15723931|AAL06378.1|Citrobacter_rodentium_DBS100|+|24878..27688|-|-|intimin
Length=936

 Score = 1407 bits (5341),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 936/936 (100%), Positives = 936/936 (100%), Gaps = 0/936 (0%)

Query  1    MIIHGFCTGTRHKHKLRKTFIMLGAGLGLFFSVNQNSFANGENYFKLRADSKLINNNIAQ  60
            MIIHGFCTGTRHKHKLRKTFIMLGAGLGLFFSVNQNSFANGENYFKLRADSKLINNNIAQ
Sbjct  1    MIIHGFCTGTRHKHKLRKTFIMLGAGLGLFFSVNQNSFANGENYFKLRADSKLINNNIAQ  60

Query  61   DRLFYTLKTGESVAQLSKSQGISVPVIWSLNKHLYSSESEMMKASPGQQIILPLKKLSAE  120
            DRLFYTLKTGESVAQLSKSQGISVPVIWSLNKHLYSSESEMMKASPGQQIILPLKKLSAE
Sbjct  61   DRLFYTLKTGESVAQLSKSQGISVPVIWSLNKHLYSSESEMMKASPGQQIILPLKKLSAE  120

Query  121  YSTLPILGTAPVVAAADVAGHTKKMSQDTTKSNTSDDKALNYaaqqaaslgsqlqsrslN  180
            YSTLPILGTAPVVAAADVAGHTKKMSQDTTKSNTSDDKALNYAAQQAASLGSQLQSRSLN
Sbjct  121  YSTLPILGTAPVVAAADVAGHTKKMSQDTTKSNTSDDKALNYAAQQAASLGSQLQSRSLN  180

Query  181  GDYAKDTALSMAGNQASSQMQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDTENMLAF  240
            GDYAKDTALSMAGNQASSQMQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDTENMLAF
Sbjct  181  GDYAKDTALSMAGNQASSQMQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDTENMLAF  240

Query  241  GQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGNNTRLGIGGEYWRDYFKSS  300
            GQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGNNTRLGIGGEYWRDYFKSS
Sbjct  241  GQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGNNTRLGIGGEYWRDYFKSS  300

Query  301  VNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGGKLMYEQYYGDNVALFNA  360
            VNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGGKLMYEQYYGDNVALFNA
Sbjct  301  VNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGGKLMYEQYYGDNVALFNA  360

Query  361  DKLYSNPGAVTVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFHYQFDKPWSQQIEPQY  420
            DKLYSNPGAVTVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFHYQFDKPWSQQIEPQY
Sbjct  361  DKLYSNPGAVTVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFHYQFDKPWSQQIEPQY  420

Query  421  VNELRTLSGSRYDLVQRNNNIILDYKKQDILSMNIPHNINGTEHSTHKIQLIVKSKYGLE  480
            VNELRTLSGSRYDLVQRNNNIILDYKKQDILSMNIPHNINGTEHSTHKIQLIVKSKYGLE
Sbjct  421  VNELRTLSGSRYDLVQRNNNIILDYKKQDILSMNIPHNINGTEHSTHKIQLIVKSKYGLE  480

Query  481  RIVWDDSTLRTqggqiqhsgsqsaqDYQAILPAYVQGGSNVYKVTARAYDRNGNSSNNVQ  540
            RIVWDDSTLRTQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSNNVQ
Sbjct  481  RIVWDDSTLRTQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSNNVQ  540

Query  541  LTITVLSNGQVVDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNIVSG  600
            LTITVLSNGQVVDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNIVSG
Sbjct  541  LTITVLSNGQVVDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNIVSG  600

Query  601  TATLSAKSANTNSSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEI  660
            TATLSAKSANTNSSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEI
Sbjct  601  TATLSAKSANTNSSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEI  660

Query  661  KVDKTIATADNKDTIEYTVKVMKGGNPISGQKVTFSKDFGTLNKTEATTDQNGYATVKLS  720
            KVDKTIATADNKDTIEYTVKVMKGGNPISGQKVTFSKDFGTLNKTEATTDQNGYATVKLS
Sbjct  661  KVDKTIATADNKDTIEYTVKVMKGGNPISGQKVTFSKDFGTLNKTEATTDQNGYATVKLS  720

Query  721  SGTPGKAIVSAKVSEVNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNWLQYGQVK  780
            SGTPGKAIVSAKVSEVNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNWLQYGQVK
Sbjct  721  SGTPGKAIVSAKVSEVNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNWLQYGQVK  780

Query  781  LQATGGNGKYTWKSSNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTINTPDNIII  840
            LQATGGNGKYTWKSSNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTINTPDNIII
Sbjct  781  LQATGGNGKYTWKSSNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTINTPDNIII  840

Query  841  AVDKINRMAYSEAESRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNSLTAWIKQS  900
            AVDKINRMAYSEAESRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNSLTAWIKQS
Sbjct  841  AVDKINRMAYSEAESRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNSLTAWIKQS  900

Query  901  TSDSASGVSNTYDLVTTNSLTNVKATDKNAFAVCVK  936
            TSDSASGVSNTYDLVTTNSLTNVKATDKNAFAVCVK
Sbjct  901  TSDSASGVSNTYDLVTTNSLTNVKATDKNAFAVCVK  936

2) eae in NC_013361


> AF311901|30|G30|15723931|AAL06378.1|Citrobacter_rodentium_DBS100|+|24878..27688|-|-|intimin
Length=936

 Score = 1220 bits (4626),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 812/939 (87%), Positives = 894/939 (96%), Gaps = 3/939 (0%)

Query  1    MITHGFYARTRHKHKLKKTFIMLSAGLGLFFYVNQNSFANGENYFKLSSDSKLLTQNAAQ  60
            MI HGF + TRHKHKL+KTFIML+AGLGLFF VNQNSFANGENYFKL +DSKL+ +N AQ
Sbjct  1    MIIHGFCTGTRHKHKLRKTFIMLGAGLGLFFSVNQNSFANGENYFKLRADSKLINNNIAQ  60

Query  61   DRLFYTLKTGETVANISKSQGISLSVIWSLNKHLYSSESEMMKAGPGQQIILPLKKLSVE  120
            DRLFYTLKTGE+VA++SKSQGIS++VIWSLNKHLYSSESEMMKA+PGQQIILPLKKLS E
Sbjct  61   DRLFYTLKTGESVAQLSKSQGISVPVIWSLNKHLYSSESEMMKASPGQQIILPLKKLSAE  120

Query  121  YSalpvlgsapvvaaggvagHTNKMTKMSPDATKSNTTDDKALNYaaqqaaslgsqlqsr  180
            YS+LP+LG+APVVAA++VAGHT+KM   S D+TKSNT+DDKALNYAAQQAASLGSQLQSR
Sbjct  121  YSTLPILGTAPVVAAADVAGHTKKM---SQDTTKSNTSDDKALNYAAQQAASLGSQLQSR  177

Query  181  slNGDYAKDTalgmassqassqlqawlqHYGTAEVNLQSGNNFDGSSLDFLLPFYDSENM  240
            SLNGDYAKDTAL+MA++QASSQ+QAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYD+ENM
Sbjct  178  SLNGDYAKDTALSMAGNQASSQMQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDTENM  237

Query  241  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF  300
            LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSG+NTRLGIGGEYWRDYF
Sbjct  238  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGNNTRLGIGGEYWRDYF  297

Query  301  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDNVAL  360
            KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALG+KLMYEQYYGDNVAL
Sbjct  298  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGGKLMYEQYYGDNVAL  357

Query  361  FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKPWSQQIE  420
            FN+DKL SNPGA TVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQF+YQFDKPWSQQIE
Sbjct  358  FNADKLYSNPGAVTVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFHYQFDKPWSQQIE  417

Query  421  PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKY  480
            PQYVNELRTLSGSRYDLVQRNNNIIL+YKKQDILS+NIPH+INGTEHST+KIQLIVKSKY
Sbjct  418  PQYVNELRTLSGSRYDLVQRNNNIILDYKKQDILSMNIPHNINGTEHSTHKIQLIVKSKY  477

Query  481  GLDRIVWDDSALRsqggqiqhggsqsAQDYQAILPAYVQGGSNIYKVTARAYDRNGNSSN  540
            GL+RIVWDDS+LR+QGGQIQH+GSQSAQDYQAILPAYVQGGSN+YKVTARAYDRNGNSSN
Sbjct  478  GLERIVWDDSTLRTQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN  537

Query  541  NVQLTITVLPNGQVVDQVGVTDFTADKTSAKADGIEAITYTATVKKNGVAQANVPVTFSI  600
            NVQLTITVL+NGQVVD+VG+T+FTADKTSAKAD  ++ITYTATVKKNGVAQANVPV+F+I
Sbjct  538  NVQLTITVLSNGQVVDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  597

Query  601  VSGTATLGANSARTDGNGKATVTLKSATPGQVVVSAKTAEMTSPLNASAVIFVDQTKASI  660
            VSGTATL+A+SA T+++GKATVTLKS  PGQVVVSAKTAEMTS+LNA+AVIFVDQTKASI
Sbjct  598  VSGTATLSAKSANTNSSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI  657

Query  661  TEIKADKTTAKADGSDAITYTVRVMKEGAPVVDQKVTFSKDFGTLNKTEATTDQNGYATV  720
            TEIK DKT A AD  D+I YTV+VMK G P+ +QKVTFSKDFGTLNKTEATTDQNGYATV
Sbjct  658  TEIKVDKTIATADNKDTIEYTVKVMKGGNPISGQKVTFSKDFGTLNKTEATTDQNGYATV  717

Query  721  KLSSNTPGKAIVSAKVSGVGTEVKATTVEFFAPLSIDGDKVTVIGTGITGALPKNWLQYG  780
            KLSS TPGKAIVSAKVS V TEVKA+TVEFFAPLSIDG+KVTVIGTG+TG+LPKNWLQYG
Sbjct  718  KLSSGTPGKAIVSAKVSEVNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNWLQYG  777

Query  781  QVKLQATGGNGKYTWKSSNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTINAPGS  840
            QVKLQATGGNGKYTWKSSNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTIN+P++
Sbjct  778  QVKLQATGGNGKYTWKSSNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTINTPDN  837

Query  841  IVIAVDKNTRVTYFDAENKCKTNSANLAQSKELLANIYSTWGAANKYPYYSGSKSLTAWI  900
            I+IAVDK  R++Y +AE++C++ S+NLAQSK +L NIYS WGAANKYPYYS+S+SLTAWI
Sbjct  838  IIIAVDKINRMAYSEAESRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNSLTAWI  897

Query  901  KQssseqssgvssTYDLVTKNQLINVGVNNKNAFSVCVK  939
            KQS+S+ +SGVS+TYDLVT N L NV   +KNAF+VCVK
Sbjct  898  KQSTSDSASGVSNTYDLVTTNSLTNVKATDKNAFAVCVK  936

3) eaeA in NC_011601


> AF311901|30|G30|15723931|AAL06378.1|Citrobacter_rodentium_DBS100|+|24878..27688|-|-|intimin
Length=936

 Score = 1176 bits (4461),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/940 (79%), Positives = 867/940 (93%), Gaps = 5/940 (0%)

Query  1    MITHGFYARTRHKHKLKKTFIMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTHNSYQ  60
            MI HGF + TRHKHKL+KTFIML+AGLGLFF VNQNSFANGENYFKL +DSKL+ +N  Q
Sbjct  1    MIIHGFCTGTRHKHKLRKTFIMLGAGLGLFFSVNQNSFANGENYFKLRADSKLINNNIAQ  60

Query  61   NRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAAPGQQIILPLKKLPFE  120
            +RLFYTLKTGE+VA+LSKSQ+I+++ IWSLNKHLYSSESEMMKA+PGQQIILPLKKL+ E
Sbjct  61   DRLFYTLKTGESVAQLSKSQGISVPVIWSLNKHLYSSESEMMKASPGQQIILPLKKLSAE  120

Query  121  YSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYaaqqaaslgsqlqsr  180
            YS+LP+LG+AP+VAA++VAGHT+K   MS D TKSN +DDKALNYAAQQAASLGSQLQSR
Sbjct  121  YSTLPILGTAPVVAAADVAGHTKK---MSQDTTKSNTSDDKALNYAAQQAASLGSQLQSR  177

Query  181  slNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM  240
            SLNGDYAKDTAL++AGNQASSQ+QAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYD+E+M
Sbjct  178  SLNGDYAKDTALSMAGNQASSQMQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDTENM  237

Query  241  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF  300
            LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSG+NTRLGIGGEYWRDYF
Sbjct  238  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGNNTRLGIGGEYWRDYF  297

Query  301  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDNVAL  360
            KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALG+KLMYEQYYGDNVAL
Sbjct  298  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGGKLMYEQYYGDNVAL  357

Query  361  FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKPWSQQIE  420
            FN+DKL SNPGA TVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQF+YQFDKPWSQQIE
Sbjct  358  FNADKLYSNPGAVTVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFHYQFDKPWSQQIE  417

Query  421  PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTERSTQKIQLIVKSKY  480
            PQYVNELRTLSGSRYDLVQRNNNIIL+YKKQDILS+NIPH+INGTE+ST+KIQLIVKSKY
Sbjct  418  PQYVNELRTLSGSRYDLVQRNNNIILDYKKQDILSMNIPHNINGTEHSTHKIQLIVKSKY  477

Query  481  GLDRIVWDDSALRsqggqiqhsgsqsAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN  540
            GL+RIVWDDS+LR+QGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN
Sbjct  478  GLERIVWDDSTLRTQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN  537

Query  541  NVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNI  600
            NV LTITVLSNGQVVD+VG+T+FTADKTSAKAD +++ITYTATVKKNGVAQANVPVSFNI
Sbjct  538  NVQLTITVLSNGQVVDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  597

Query  601  VSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI  660
            VSGTA LSA+SANTN+SGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI
Sbjct  598  VSGTATLSAKSANTNSSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI  657

Query  661  TEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKV  720
            TEIK DKT A A+ +D+I YTVKVMKG++P+S Q VTF+  +G L+++   TD NGYA V
Sbjct  658  TEIKVDKTIATADNKDTIEYTVKVMKGGNPISGQKVTFSKDFGTLNKTEATTDQNGYATV  717

Query  721  TLTSTTPGKSLvsarvsdvavdvKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYG  780
             L+S TPGK++VSA+VS+V  +VKA+ VEFF+ L+ID+ ++ ++GTGV G LP  WLQYG
Sbjct  718  KLSSGTPGKAIVSAKVSEVNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNWLQYG  777

Query  781  QVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQTATYTIATPN  840
            QV+L+A+GGNGKYTW+S+N  IASVD +SG +TL+EKG++TI+V+S+DNQ+ATYTI TP+
Sbjct  778  QVKLQATGGNGKYTWKSSNTKIASVD-NSGVITLNEKGSATITVVSGDNQSATYTINTPD  836

Query  841  SLIVP-NMSKRVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGAANKYEYYKSSQTIISW  899
            ++I++ +  +R++Y++A + C+ ++++L+ S++ LEN++  WGAANKY YY SS+++ +W
Sbjct  837  NIIIAVDKINRMAYSEAESRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNSLTAW  896

Query  900  VQQTAQDAKSGVASTYDLVKQNPLNNIKASESNAYATCVK  939
            ++Q++ D+ SGV++TYDLV  N+L N+KA++ NA+A CVK
Sbjct  897  IKQSTSDSASGVSNTYDLVTTNSLTNVKATDKNAFAVCVK  936

4) ECH74115_5054 in NC_011353


> AF311901|30|G30|15723931|AAL06378.1|Citrobacter_rodentium_DBS100|+|24878..27688|-|-|intimin
Length=936

 Score = 1109 bits (4206),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 734/942 (78%), Positives = 844/942 (90%), Gaps = 16/942 (1%)

Query  1    MITHGCYtrtrhkhklkktlIMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTHDSYQ  60
            MI HG  T TRHKHKL+KT+IML+AGLGLFF VNQNSFANGENYFKL +DSKL+ ++  Q
Sbjct  1    MIIHGFCTGTRHKHKLRKTFIMLGAGLGLFFSVNQNSFANGENYFKLRADSKLINNNIAQ  60

Query  61   NRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAAPGQQIILPLKKLPFE  120
            +RLFYTLKTGE+VA+LSKSQ+I+++ IWSLNKHLYSSESEMMKA+PGQQIILPLKKL+ E
Sbjct  61   DRLFYTLKTGESVAQLSKSQGISVPVIWSLNKHLYSSESEMMKASPGQQIILPLKKLSAE  120

Query  121  YSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYaaqqaaslgsqlqsr  180
            YS+LP+LG+AP+VAA++VAGHT+K   MS D TKSN +DDKALNYAAQQAASLGSQLQSR
Sbjct  121  YSTLPILGTAPVVAAADVAGHTKK---MSQDTTKSNTSDDKALNYAAQQAASLGSQLQSR  177

Query  181  slNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM  240
            SLNGDYAKDTAL++AGNQASSQ+QAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYD+E+M
Sbjct  178  SLNGDYAKDTALSMAGNQASSQMQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDTENM  237

Query  241  LAFGQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF  300
            LAFGQVGARYIDSRFTANLGAGQRFFLP NMLGYNVFIDQDFSG+NTRLGIGGEYWRDYF
Sbjct  238  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGNNTRLGIGGEYWRDYF  297

Query  301  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVAL  360
            KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALG+KL+YEQYYGDNVAL
Sbjct  298  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGGKLMYEQYYGDNVAL  357

Query  361  FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIE  420
            FN+DKL SNPGA TVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQF+YQFDK+WSQQIE
Sbjct  358  FNADKLYSNPGAVTVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFHYQFDKPWSQQIE  417

Query  421  PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKY  480
            PQYVNELRTLSGSRYDLVQRNNNIIL+YKKQDILS+NIPH+INGTEHST+KIQLIVKSKY
Sbjct  418  PQYVNELRTLSGSRYDLVQRNNNIILDYKKQDILSMNIPHNINGTEHSTHKIQLIVKSKY  477

Query  481  GLDRIVWDDSALRsqggqiqhsgsqsAQDYQAILPAYVQGGSNIYKVTARAYDRNGNSSN  540
            GL+RIVWDDS+LR+QGGQIQHSGSQSAQDYQAILPAYVQGGSN+YKVTARAYDRNGNSSN
Sbjct  478  GLERIVWDDSTLRTQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN  537

Query  541  NVQLTITVLSNGQVVDQVGVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  600
            NVQLTITVLSNGQVVD+VG+T+FTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI
Sbjct  538  NVQLTITVLSNGQVVDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  597

Query  601  VSGTATLGANSAKTDANGKATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASI  660
            VSGTATL+A+SA+T+++GKATVTLKS  PGQVVVSAKTAEMTSALNA+AVIF DQTKASI
Sbjct  598  VSGTATLSAKSANTNSSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI  657

Query  661  TEIKADKTTAVANGKDAIKYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGR  720
            TEIK DKT A A+ KD+I YTVKVMK G+P++ Q VTFS +FG +N   +T+ATT+++G 
Sbjct  658  TEIKVDKTIATADNKDTIEYTVKVMKGGNPISGQKVTFSKDFGTLN---KTEATTDQNGY  714

Query  721  ATITLTSSSAGKATVSATVSD-GAEVKATEVTFFDELKID-NKVDIIGNNVRGELPNIWL  778
            AT+ L+S+++GKA VSA VS+  +EVKA+ V FF  L ID NKV +IG  V G LP+ WL
Sbjct  715  ATVKLSSGTPGKAIVSAKVSEVNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNWL  774

Query  779  QYGQFKLKASGGDGTYSWYSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKA  838
            QYGQ KL+A+GG+G Y+W S NT IA+VD SG +TLN KGS  I   SGD+Q+ +YTI++
Sbjct  775  QYGQVKLQATGGNGKYTWKSSNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTINT  834

Query  839  PSYMI----KVDKQAYYADAMSICKNL---LPSTQTVLSDIYDSWGAANKYSHYSSMNSI  891
            P  +I    K+++ A Y++A S C+ +   L+ +++VL +IY  WGAANKY+ YSS NS+
Sbjct  835  PDNIIIAVDKINRMA-YSEAESRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNSL  893

Query  892  TAWIKQTSSEQRSGVSSTYNLITQNPLPGVNVNTPNVYAVCV  933
            TAWIKQ++S+  SGVS+TY+L+T N+L  V+    N +AVCV
Sbjct  894  TAWIKQSTSDSASGVSNTYDLVTTNSLTNVKATDKNAFAVCV  935

5) eae in NC_002655


> AF311901|30|G30|15723931|AAL06378.1|Citrobacter_rodentium_DBS100|+|24878..27688|-|-|intimin
Length=936

 Score = 1109 bits (4206),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 734/942 (78%), Positives = 844/942 (90%), Gaps = 16/942 (1%)

Query  1    MITHGCYtrtrhkhklkktlIMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTHDSYQ  60
            MI HG  T TRHKHKL+KT+IML+AGLGLFF VNQNSFANGENYFKL +DSKL+ ++  Q
Sbjct  1    MIIHGFCTGTRHKHKLRKTFIMLGAGLGLFFSVNQNSFANGENYFKLRADSKLINNNIAQ  60

Query  61   NRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAAPGQQIILPLKKLPFE  120
            +RLFYTLKTGE+VA+LSKSQ+I+++ IWSLNKHLYSSESEMMKA+PGQQIILPLKKL+ E
Sbjct  61   DRLFYTLKTGESVAQLSKSQGISVPVIWSLNKHLYSSESEMMKASPGQQIILPLKKLSAE  120

Query  121  YSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYaaqqaaslgsqlqsr  180
            YS+LP+LG+AP+VAA++VAGHT+K   MS D TKSN +DDKALNYAAQQAASLGSQLQSR
Sbjct  121  YSTLPILGTAPVVAAADVAGHTKK---MSQDTTKSNTSDDKALNYAAQQAASLGSQLQSR  177

Query  181  slNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM  240
            SLNGDYAKDTAL++AGNQASSQ+QAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYD+E+M
Sbjct  178  SLNGDYAKDTALSMAGNQASSQMQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDTENM  237

Query  241  LAFGQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF  300
            LAFGQVGARYIDSRFTANLGAGQRFFLP NMLGYNVFIDQDFSG+NTRLGIGGEYWRDYF
Sbjct  238  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGNNTRLGIGGEYWRDYF  297

Query  301  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVAL  360
            KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALG+KL+YEQYYGDNVAL
Sbjct  298  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGGKLMYEQYYGDNVAL  357

Query  361  FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIE  420
            FN+DKL SNPGA TVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQF+YQFDK+WSQQIE
Sbjct  358  FNADKLYSNPGAVTVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFHYQFDKPWSQQIE  417

Query  421  PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKY  480
            PQYVNELRTLSGSRYDLVQRNNNIIL+YKKQDILS+NIPH+INGTEHST+KIQLIVKSKY
Sbjct  418  PQYVNELRTLSGSRYDLVQRNNNIILDYKKQDILSMNIPHNINGTEHSTHKIQLIVKSKY  477

Query  481  GLDRIVWDDSALRsqggqiqhsgsqsAQDYQAILPAYVQGGSNIYKVTARAYDRNGNSSN  540
            GL+RIVWDDS+LR+QGGQIQHSGSQSAQDYQAILPAYVQGGSN+YKVTARAYDRNGNSSN
Sbjct  478  GLERIVWDDSTLRTQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN  537

Query  541  NVQLTITVLSNGQVVDQVGVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  600
            NVQLTITVLSNGQVVD+VG+T+FTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI
Sbjct  538  NVQLTITVLSNGQVVDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  597

Query  601  VSGTATLGANSAKTDANGKATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASI  660
            VSGTATL+A+SA+T+++GKATVTLKS  PGQVVVSAKTAEMTSALNA+AVIF DQTKASI
Sbjct  598  VSGTATLSAKSANTNSSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI  657

Query  661  TEIKADKTTAVANGKDAIKYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGR  720
            TEIK DKT A A+ KD+I YTVKVMK G+P++ Q VTFS +FG +N   +T+ATT+++G 
Sbjct  658  TEIKVDKTIATADNKDTIEYTVKVMKGGNPISGQKVTFSKDFGTLN---KTEATTDQNGY  714

Query  721  ATITLTSSSAGKATVSATVSD-GAEVKATEVTFFDELKID-NKVDIIGNNVRGELPNIWL  778
            AT+ L+S+++GKA VSA VS+  +EVKA+ V FF  L ID NKV +IG  V G LP+ WL
Sbjct  715  ATVKLSSGTPGKAIVSAKVSEVNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNWL  774

Query  779  QYGQFKLKASGGDGTYSWYSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKA  838
            QYGQ KL+A+GG+G Y+W S NT IA+VD SG +TLN KGS  I   SGD+Q+ +YTI++
Sbjct  775  QYGQVKLQATGGNGKYTWKSSNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTINT  834

Query  839  PSYMI----KVDKQAYYADAMSICKNL---LPSTQTVLSDIYDSWGAANKYSHYSSMNSI  891
            P  +I    K+++ A Y++A S C+ +   L+ +++VL +IY  WGAANKY+ YSS NS+
Sbjct  835  PDNIIIAVDKINRMA-YSEAESRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNSL  893

Query  892  TAWIKQTSSEQRSGVSSTYNLITQNPLPGVNVNTPNVYAVCV  933
            TAWIKQ++S+  SGVS+TY+L+T N+L  V+    N +AVCV
Sbjct  894  TAWIKQSTSDSASGVSNTYDLVTTNSLTNVKATDKNAFAVCV  935

6) ECs4559 in NC_002695


> AF311901|30|G30|15723931|AAL06378.1|Citrobacter_rodentium_DBS100|+|24878..27688|-|-|intimin
Length=936

 Score = 1109 bits (4206),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 734/942 (78%), Positives = 844/942 (90%), Gaps = 16/942 (1%)

Query  1    MITHGCYtrtrhkhklkktlIMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTHDSYQ  60
            MI HG  T TRHKHKL+KT+IML+AGLGLFF VNQNSFANGENYFKL +DSKL+ ++  Q
Sbjct  1    MIIHGFCTGTRHKHKLRKTFIMLGAGLGLFFSVNQNSFANGENYFKLRADSKLINNNIAQ  60

Query  61   NRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAAPGQQIILPLKKLPFE  120
            +RLFYTLKTGE+VA+LSKSQ+I+++ IWSLNKHLYSSESEMMKA+PGQQIILPLKKL+ E
Sbjct  61   DRLFYTLKTGESVAQLSKSQGISVPVIWSLNKHLYSSESEMMKASPGQQIILPLKKLSAE  120

Query  121  YSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYaaqqaaslgsqlqsr  180
            YS+LP+LG+AP+VAA++VAGHT+K   MS D TKSN +DDKALNYAAQQAASLGSQLQSR
Sbjct  121  YSTLPILGTAPVVAAADVAGHTKK---MSQDTTKSNTSDDKALNYAAQQAASLGSQLQSR  177

Query  181  slNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM  240
            SLNGDYAKDTAL++AGNQASSQ+QAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYD+E+M
Sbjct  178  SLNGDYAKDTALSMAGNQASSQMQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDTENM  237

Query  241  LAFGQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF  300
            LAFGQVGARYIDSRFTANLGAGQRFFLP NMLGYNVFIDQDFSG+NTRLGIGGEYWRDYF
Sbjct  238  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGNNTRLGIGGEYWRDYF  297

Query  301  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVAL  360
            KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALG+KL+YEQYYGDNVAL
Sbjct  298  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGGKLMYEQYYGDNVAL  357

Query  361  FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIE  420
            FN+DKL SNPGA TVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQF+YQFDK+WSQQIE
Sbjct  358  FNADKLYSNPGAVTVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFHYQFDKPWSQQIE  417

Query  421  PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKY  480
            PQYVNELRTLSGSRYDLVQRNNNIIL+YKKQDILS+NIPH+INGTEHST+KIQLIVKSKY
Sbjct  418  PQYVNELRTLSGSRYDLVQRNNNIILDYKKQDILSMNIPHNINGTEHSTHKIQLIVKSKY  477

Query  481  GLDRIVWDDSALRsqggqiqhsgsqsAQDYQAILPAYVQGGSNIYKVTARAYDRNGNSSN  540
            GL+RIVWDDS+LR+QGGQIQHSGSQSAQDYQAILPAYVQGGSN+YKVTARAYDRNGNSSN
Sbjct  478  GLERIVWDDSTLRTQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN  537

Query  541  NVQLTITVLSNGQVVDQVGVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  600
            NVQLTITVLSNGQVVD+VG+T+FTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI
Sbjct  538  NVQLTITVLSNGQVVDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  597

Query  601  VSGTATLGANSAKTDANGKATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASI  660
            VSGTATL+A+SA+T+++GKATVTLKS  PGQVVVSAKTAEMTSALNA+AVIF DQTKASI
Sbjct  598  VSGTATLSAKSANTNSSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI  657

Query  661  TEIKADKTTAVANGKDAIKYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGR  720
            TEIK DKT A A+ KD+I YTVKVMK G+P++ Q VTFS +FG +N   +T+ATT+++G 
Sbjct  658  TEIKVDKTIATADNKDTIEYTVKVMKGGNPISGQKVTFSKDFGTLN---KTEATTDQNGY  714

Query  721  ATITLTSSSAGKATVSATVSD-GAEVKATEVTFFDELKID-NKVDIIGNNVRGELPNIWL  778
            AT+ L+S+++GKA VSA VS+  +EVKA+ V FF  L ID NKV +IG  V G LP+ WL
Sbjct  715  ATVKLSSGTPGKAIVSAKVSEVNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNWL  774

Query  779  QYGQFKLKASGGDGTYSWYSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKA  838
            QYGQ KL+A+GG+G Y+W S NT IA+VD SG +TLN KGS  I   SGD+Q+ +YTI++
Sbjct  775  QYGQVKLQATGGNGKYTWKSSNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTINT  834

Query  839  PSYMI----KVDKQAYYADAMSICKNL---LPSTQTVLSDIYDSWGAANKYSHYSSMNSI  891
            P  +I    K+++ A Y++A S C+ +   L+ +++VL +IY  WGAANKY+ YSS NS+
Sbjct  835  PDNIIIAVDKINRMA-YSEAESRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNSL  893

Query  892  TAWIKQTSSEQRSGVSSTYNLITQNPLPGVNVNTPNVYAVCV  933
            TAWIKQ++S+  SGVS+TY+L+T N+L  V+    N +AVCV
Sbjct  894  TAWIKQSTSDSASGVSNTYDLVTTNSLTNVKATDKNAFAVCV  935

7) eae in NC_013008


> AF311901|30|G30|15723931|AAL06378.1|Citrobacter_rodentium_DBS100|+|24878..27688|-|-|intimin
Length=936

 Score = 1109 bits (4206),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 734/942 (78%), Positives = 844/942 (90%), Gaps = 16/942 (1%)

Query  1    MITHGCYtrtrhkhklkktlIMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTHDSYQ  60
            MI HG  T TRHKHKL+KT+IML+AGLGLFF VNQNSFANGENYFKL +DSKL+ ++  Q
Sbjct  1    MIIHGFCTGTRHKHKLRKTFIMLGAGLGLFFSVNQNSFANGENYFKLRADSKLINNNIAQ  60

Query  61   NRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAAPGQQIILPLKKLPFE  120
            +RLFYTLKTGE+VA+LSKSQ+I+++ IWSLNKHLYSSESEMMKA+PGQQIILPLKKL+ E
Sbjct  61   DRLFYTLKTGESVAQLSKSQGISVPVIWSLNKHLYSSESEMMKASPGQQIILPLKKLSAE  120

Query  121  YSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYaaqqaaslgsqlqsr  180
            YS+LP+LG+AP+VAA++VAGHT+K   MS D TKSN +DDKALNYAAQQAASLGSQLQSR
Sbjct  121  YSTLPILGTAPVVAAADVAGHTKK---MSQDTTKSNTSDDKALNYAAQQAASLGSQLQSR  177

Query  181  slNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM  240
            SLNGDYAKDTAL++AGNQASSQ+QAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYD+E+M
Sbjct  178  SLNGDYAKDTALSMAGNQASSQMQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDTENM  237

Query  241  LAFGQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF  300
            LAFGQVGARYIDSRFTANLGAGQRFFLP NMLGYNVFIDQDFSG+NTRLGIGGEYWRDYF
Sbjct  238  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGNNTRLGIGGEYWRDYF  297

Query  301  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVAL  360
            KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALG+KL+YEQYYGDNVAL
Sbjct  298  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGGKLMYEQYYGDNVAL  357

Query  361  FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIE  420
            FN+DKL SNPGA TVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQF+YQFDK+WSQQIE
Sbjct  358  FNADKLYSNPGAVTVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFHYQFDKPWSQQIE  417

Query  421  PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKY  480
            PQYVNELRTLSGSRYDLVQRNNNIIL+YKKQDILS+NIPH+INGTEHST+KIQLIVKSKY
Sbjct  418  PQYVNELRTLSGSRYDLVQRNNNIILDYKKQDILSMNIPHNINGTEHSTHKIQLIVKSKY  477

Query  481  GLDRIVWDDSALRsqggqiqhsgsqsAQDYQAILPAYVQGGSNIYKVTARAYDRNGNSSN  540
            GL+RIVWDDS+LR+QGGQIQHSGSQSAQDYQAILPAYVQGGSN+YKVTARAYDRNGNSSN
Sbjct  478  GLERIVWDDSTLRTQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN  537

Query  541  NVQLTITVLSNGQVVDQVGVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  600
            NVQLTITVLSNGQVVD+VG+T+FTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI
Sbjct  538  NVQLTITVLSNGQVVDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  597

Query  601  VSGTATLGANSAKTDANGKATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASI  660
            VSGTATL+A+SA+T+++GKATVTLKS  PGQVVVSAKTAEMTSALNA+AVIF DQTKASI
Sbjct  598  VSGTATLSAKSANTNSSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI  657

Query  661  TEIKADKTTAVANGKDAIKYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGR  720
            TEIK DKT A A+ KD+I YTVKVMK G+P++ Q VTFS +FG +N   +T+ATT+++G 
Sbjct  658  TEIKVDKTIATADNKDTIEYTVKVMKGGNPISGQKVTFSKDFGTLN---KTEATTDQNGY  714

Query  721  ATITLTSSSAGKATVSATVSD-GAEVKATEVTFFDELKID-NKVDIIGNNVRGELPNIWL  778
            AT+ L+S+++GKA VSA VS+  +EVKA+ V FF  L ID NKV +IG  V G LP+ WL
Sbjct  715  ATVKLSSGTPGKAIVSAKVSEVNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNWL  774

Query  779  QYGQFKLKASGGDGTYSWYSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKA  838
            QYGQ KL+A+GG+G Y+W S NT IA+VD SG +TLN KGS  I   SGD+Q+ +YTI++
Sbjct  775  QYGQVKLQATGGNGKYTWKSSNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTINT  834

Query  839  PSYMI----KVDKQAYYADAMSICKNL---LPSTQTVLSDIYDSWGAANKYSHYSSMNSI  891
            P  +I    K+++ A Y++A S C+ +   L+ +++VL +IY  WGAANKY+ YSS NS+
Sbjct  835  PDNIIIAVDKINRMA-YSEAESRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNSL  893

Query  892  TAWIKQTSSEQRSGVSSTYNLITQNPLPGVNVNTPNVYAVCV  933
            TAWIKQ++S+  SGVS+TY+L+T N+L  V+    N +AVCV
Sbjct  894  TAWIKQSTSDSASGVSNTYDLVTTNSLTNVKATDKNAFAVCV  935

8) CDCO157_4293 in NC_017906


> AF311901|30|G30|15723931|AAL06378.1|Citrobacter_rodentium_DBS100|+|24878..27688|-|-|intimin
Length=936

 Score = 1109 bits (4206),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 734/942 (78%), Positives = 844/942 (90%), Gaps = 16/942 (1%)

Query  1    MITHGCYtrtrhkhklkktlIMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTHDSYQ  60
            MI HG  T TRHKHKL+KT+IML+AGLGLFF VNQNSFANGENYFKL +DSKL+ ++  Q
Sbjct  1    MIIHGFCTGTRHKHKLRKTFIMLGAGLGLFFSVNQNSFANGENYFKLRADSKLINNNIAQ  60

Query  61   NRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAAPGQQIILPLKKLPFE  120
            +RLFYTLKTGE+VA+LSKSQ+I+++ IWSLNKHLYSSESEMMKA+PGQQIILPLKKL+ E
Sbjct  61   DRLFYTLKTGESVAQLSKSQGISVPVIWSLNKHLYSSESEMMKASPGQQIILPLKKLSAE  120

Query  121  YSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYaaqqaaslgsqlqsr  180
            YS+LP+LG+AP+VAA++VAGHT+K   MS D TKSN +DDKALNYAAQQAASLGSQLQSR
Sbjct  121  YSTLPILGTAPVVAAADVAGHTKK---MSQDTTKSNTSDDKALNYAAQQAASLGSQLQSR  177

Query  181  slNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM  240
            SLNGDYAKDTAL++AGNQASSQ+QAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYD+E+M
Sbjct  178  SLNGDYAKDTALSMAGNQASSQMQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDTENM  237

Query  241  LAFGQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF  300
            LAFGQVGARYIDSRFTANLGAGQRFFLP NMLGYNVFIDQDFSG+NTRLGIGGEYWRDYF
Sbjct  238  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGNNTRLGIGGEYWRDYF  297

Query  301  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVAL  360
            KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALG+KL+YEQYYGDNVAL
Sbjct  298  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGGKLMYEQYYGDNVAL  357

Query  361  FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIE  420
            FN+DKL SNPGA TVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQF+YQFDK+WSQQIE
Sbjct  358  FNADKLYSNPGAVTVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFHYQFDKPWSQQIE  417

Query  421  PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKY  480
            PQYVNELRTLSGSRYDLVQRNNNIIL+YKKQDILS+NIPH+INGTEHST+KIQLIVKSKY
Sbjct  418  PQYVNELRTLSGSRYDLVQRNNNIILDYKKQDILSMNIPHNINGTEHSTHKIQLIVKSKY  477

Query  481  GLDRIVWDDSALRsqggqiqhsgsqsAQDYQAILPAYVQGGSNIYKVTARAYDRNGNSSN  540
            GL+RIVWDDS+LR+QGGQIQHSGSQSAQDYQAILPAYVQGGSN+YKVTARAYDRNGNSSN
Sbjct  478  GLERIVWDDSTLRTQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN  537

Query  541  NVQLTITVLSNGQVVDQVGVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  600
            NVQLTITVLSNGQVVD+VG+T+FTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI
Sbjct  538  NVQLTITVLSNGQVVDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  597

Query  601  VSGTATLGANSAKTDANGKATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASI  660
            VSGTATL+A+SA+T+++GKATVTLKS  PGQVVVSAKTAEMTSALNA+AVIF DQTKASI
Sbjct  598  VSGTATLSAKSANTNSSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI  657

Query  661  TEIKADKTTAVANGKDAIKYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGR  720
            TEIK DKT A A+ KD+I YTVKVMK G+P++ Q VTFS +FG +N   +T+ATT+++G 
Sbjct  658  TEIKVDKTIATADNKDTIEYTVKVMKGGNPISGQKVTFSKDFGTLN---KTEATTDQNGY  714

Query  721  ATITLTSSSAGKATVSATVSD-GAEVKATEVTFFDELKID-NKVDIIGNNVRGELPNIWL  778
            AT+ L+S+++GKA VSA VS+  +EVKA+ V FF  L ID NKV +IG  V G LP+ WL
Sbjct  715  ATVKLSSGTPGKAIVSAKVSEVNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNWL  774

Query  779  QYGQFKLKASGGDGTYSWYSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKA  838
            QYGQ KL+A+GG+G Y+W S NT IA+VD SG +TLN KGS  I   SGD+Q+ +YTI++
Sbjct  775  QYGQVKLQATGGNGKYTWKSSNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTINT  834

Query  839  PSYMI----KVDKQAYYADAMSICKNL---LPSTQTVLSDIYDSWGAANKYSHYSSMNSI  891
            P  +I    K+++ A Y++A S C+ +   L+ +++VL +IY  WGAANKY+ YSS NS+
Sbjct  835  PDNIIIAVDKINRMA-YSEAESRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNSL  893

Query  892  TAWIKQTSSEQRSGVSSTYNLITQNPLPGVNVNTPNVYAVCV  933
            TAWIKQ++S+  SGVS+TY+L+T N+L  V+    N +AVCV
Sbjct  894  TAWIKQSTSDSASGVSNTYDLVTTNSLTNVKATDKNAFAVCV  935

9) eae in NC_013364


> AF311901|30|G30|15723931|AAL06378.1|Citrobacter_rodentium_DBS100|+|24878..27688|-|-|intimin
Length=936

 Score = 1106 bits (4192),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 722/942 (77%), Positives = 839/942 (90%), Gaps = 15/942 (1%)

Query  1    MITHGFYARTRHKHKLKKTFIMLSAGLGLFFYVNQNSFANGENYFKLSSDSKLLTQNVAQ  60
            MI HGF + TRHKHKL+KTFIML+AGLGLFF VNQNSFANGENYFKL +DSKL+ +N+AQ
Sbjct  1    MIIHGFCTGTRHKHKLRKTFIMLGAGLGLFFSVNQNSFANGENYFKLRADSKLINNNIAQ  60

Query  61   DRLFYTLKTGETVssisksqgislsVIWSLNKHLYSSESEMLKAAPGQQIILPLKKLSVE  120
            DRLFYTLKTGE+V+ +SKSQGIS++VIWSLNKHLYSSESEM+KA+PGQQIILPLKKLS E
Sbjct  61   DRLFYTLKTGESVAQLSKSQGISVPVIWSLNKHLYSSESEMMKASPGQQIILPLKKLSAE  120

Query  121  YGalpvlgsapvvaaggvagHTNKMTKMSPDATQSNMTDDKALNYTaqqaaslgsqlqsr  180
            Y++LP+LG+APVVAA++VAGHT+KM   S D+T+SN +DDKALNY+AQQAASLGSQLQSR
Sbjct  121  YSTLPILGTAPVVAAADVAGHTKKM---SQDTTKSNTSDDKALNYAAQQAASLGSQLQSR  177

Query  181  slHGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM  240
            SL+GDYAKDTAL++AGNQASSQ+QAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYD+E+M
Sbjct  178  SLNGDYAKDTALSMAGNQASSQMQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDTENM  237

Query  241  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF  300
            LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSG+NTRLGIGGEYWRDYF
Sbjct  238  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGNNTRLGIGGEYWRDYF  297

Query  301  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDNVAL  360
            KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALG+KLMYEQYYGDNVAL
Sbjct  298  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGGKLMYEQYYGDNVAL  357

Query  361  FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQLRYQFDKPWSQQIE  420
            FN+DKL SNPGA TVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQ++YQFDKPWSQQIE
Sbjct  358  FNADKLYSNPGAVTVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFHYQFDKPWSQQIE  417

Query  421  PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKY  480
            PQYVNELRTLSGSRYDLVQRNNNIIL+YKKQDILS+NIPH+INGTEHST+KIQLIVKSKY
Sbjct  418  PQYVNELRTLSGSRYDLVQRNNNIILDYKKQDILSMNIPHNINGTEHSTHKIQLIVKSKY  477

Query  481  GLDRIVWDDSALRsqggqiqhsgsqsAQDYQAILPAYVQGGSNIYKVTARAYDRNGNSSN  540
            GL+RIVWDDS+LR+QGGQIQHSGSQSAQDYQAILPAYVQGGSN+YKVTARAYDRNGNSSN
Sbjct  478  GLERIVWDDSTLRTQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN  537

Query  541  NVQLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVTQANVPVSFNI  600
            NVQLTITVLSNGQVVD+VG+T+FTADKTSAKAD +++ITYTATVKKNGV+QANVPVSFNI
Sbjct  538  NVQLTITVLSNGQVVDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  597

Query  601  VSGTATLGANSATTDANGKATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFVEQTKASI  660
            VSGTATL+A+SA T+++GKATVTLKS  PGQVVVSAKTAEMTSALNA+AVIFV+QTKASI
Sbjct  598  VSGTATLSAKSANTNSSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI  657

Query  661  TEIKADKTTAVANGNDAVTYTVKVMKEGQPVQGHSVAFTTNFGMFNGKSQTQNATTGSDG  720
            TEIK DKT A A+ +D++ YTVKVMK G+P+ G+ V+F+ +FG +N      +ATT+ +G
Sbjct  658  TEIKVDKTIATADNKDTIEYTVKVMKGGNPISGQKVTFSKDFGTLN----KTEATTDQNG  713

Query  721  RATITLTSSSAGKATVSATVSG-GNDVKAPEVTFFDGLKID-NKVDILGKNVTGDLPNIW  778
             AT+ L+S+++GKA VSA VS    +VKA+ V FF  L ID NKV ++G  VTG LP+ W
Sbjct  714  YATVKLSSGTPGKAIVSAKVSEVNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNW  773

Query  779  LQYGQFKLKVSGGNGTYSWHSENTNIATVDESGKVTLKGKGTAVINVTSGDKQTVSYTIK  838
            LQYGQ KL+ +GGNG Y+W S NT+IA+VD+SG +TL+ KG+A I V SGD+Q+ +YTI+
Sbjct  774  LQYGQVKLQATGGNGKYTWKSSNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTIN  833

Query  839  APNYMIRVGNKA---SYANAMSFCGNL---LPSSQTVLSNVYNSWGPANGYDHYRSMQSI  892
            +P+ +I   +K    +Y++A S C  +   L+ S++VL N+Y+ WG+AN Y  Y S +S+
Sbjct  834  TPDNIIIAVDKINRMAYSEAESRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNSL  893

Query  893  TAWITQTEADKISGVSTTYDLITQNPHKDVTLNAPNVYAVCV  934
            TAWI Q+ +D  SGVS TYDL+T N+  +V     N +AVCV
Sbjct  894  TAWIKQSTSDSASGVSNTYDLVTTNSLTNVKATDKNAFAVCV  935

10) eae in NC_013941


> AF311901|30|G30|15723931|AAL06378.1|Citrobacter_rodentium_DBS100|+|24878..27688|-|-|intimin
Length=936

 Score = 1100 bits (4169),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 734/942 (78%), Positives = 845/942 (90%), Gaps = 16/942 (1%)

Query  1    MITHGCYtrtrhkhklkktlIMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTHDSYQ  60
            MI HG  T TRHKHKL+KT+IML+AGLGLFF VNQNSFANGENYFKL +DSKL+ ++  Q
Sbjct  1    MIIHGFCTGTRHKHKLRKTFIMLGAGLGLFFSVNQNSFANGENYFKLRADSKLINNNIAQ  60

Query  61   NRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAAPGQQIILPLKKLPFE  120
            +RLFYTLKTGE+VA+LSKSQ+I+++ IWSLNKHLYSSESEMMKA+PGQQIILPLKKL+ E
Sbjct  61   DRLFYTLKTGESVAQLSKSQGISVPVIWSLNKHLYSSESEMMKASPGQQIILPLKKLSAE  120

Query  121  YSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYaaqqaaslgsqlqsr  180
            YS+LP+LG+AP+VAA++VAGHT+K   MS D TKSN +DDKALNYAAQQAASLGSQLQSR
Sbjct  121  YSTLPILGTAPVVAAADVAGHTKK---MSQDTTKSNTSDDKALNYAAQQAASLGSQLQSR  177

Query  181  slNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM  240
            SLNGDYAKDTAL++AGNQASSQ+QAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYD+E+M
Sbjct  178  SLNGDYAKDTALSMAGNQASSQMQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDTENM  237

Query  241  LAFGQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF  300
            LAFGQVGARYIDSRFTANLGAGQRFFLP NMLGYNVFIDQDFSG+NTRLGIGGEYWRDYF
Sbjct  238  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGNNTRLGIGGEYWRDYF  297

Query  301  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVAL  360
            KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALG+KL+YEQYYGDNVAL
Sbjct  298  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGGKLMYEQYYGDNVAL  357

Query  361  FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIE  420
            FN+DKL SNPGA TVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQF+YQFDK+WSQQIE
Sbjct  358  FNADKLYSNPGAVTVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFHYQFDKPWSQQIE  417

Query  421  PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKY  480
            PQYVNELRTLSGSRYDLVQRNNNIIL+YKKQDILS+NIPH+INGTEHST+KIQLIVKSKY
Sbjct  418  PQYVNELRTLSGSRYDLVQRNNNIILDYKKQDILSMNIPHNINGTEHSTHKIQLIVKSKY  477

Query  481  GLDRIVWDDSALRsqggqiqhsgsqsAQDYQAILPAYVQGGSNIYKVTARAYDRNGNSSN  540
            GL+RIVWDDS+LR+QGGQIQHSGSQSAQDYQAILPAYVQGGSN+YKVTARAYDRNGNSSN
Sbjct  478  GLERIVWDDSTLRTQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN  537

Query  541  NVQLTITVLSNGQVVDQVGVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  600
            NVQLTITVLSNGQVVD+VG+T+FTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI
Sbjct  538  NVQLTITVLSNGQVVDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  597

Query  601  VSGTATLGANSAKTDANGKATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASI  660
            VSGTATL+A+SA+T+++GKATVTLKS  PGQVVVSAKTAEMTSALNA+AVIF DQTKASI
Sbjct  598  VSGTATLSAKSANTNSSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI  657

Query  661  TEIKADKTTAVANGKDAIKYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGR  720
            TEIK DKT A A+ KD+I YTVKVMK G+P++ Q VTFS +FG +N   +T+ATT+++G 
Sbjct  658  TEIKVDKTIATADNKDTIEYTVKVMKGGNPISGQKVTFSKDFGTLN---KTEATTDQNGY  714

Query  721  ATITLTSSSAGKATVSATVSD-GAEVKATEVTFFDELKID-NKVDIIGNNVRGELPNIWL  778
            AT+ L+S+++GKA VSA VS+  +EVKA+ V FF  L ID NKV +IG  V G LP+ WL
Sbjct  715  ATVKLSSGTPGKAIVSAKVSEVNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNWL  774

Query  779  QYGQFKLKASGGDGTYSWYSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKA  838
            QYGQ KL+A+GG+G Y+W S NT IA+VD SG +TLN KGS  I   SGD+Q+ +YTI++
Sbjct  775  QYGQVKLQATGGNGKYTWKSSNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTINT  834

Query  839  PSYMI----KVDKQAYYADAMSICKNL---LPSTQTVLSDIYDSWGAANKYSHYSSMNSI  891
            P  +I    K+++ A Y++A S C+ +   L+ +++VL +IY  WGAANKY+ YSS NS+
Sbjct  835  PDNIIIAVDKINRMA-YSEAESRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNSL  893

Query  892  TAWIKQTsseqssgvssTYNLITQNPLPRVNVNTPNVYAVCV  933
            TAWIKQ++S+ +SGVS+TY+L+T N+L  V+    N +AVCV
Sbjct  894  TAWIKQSTSDSASGVSNTYDLVTTNSLTNVKATDKNAFAVCV  935

11) ECO55CA74_21185 in NC_017656


> AF311901|30|G30|15723931|AAL06378.1|Citrobacter_rodentium_DBS100|+|24878..27688|-|-|intimin
Length=936

 Score = 1100 bits (4169),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 734/942 (78%), Positives = 845/942 (90%), Gaps = 16/942 (1%)

Query  1    MITHGCYtrtrhkhklkktlIMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTHDSYQ  60
            MI HG  T TRHKHKL+KT+IML+AGLGLFF VNQNSFANGENYFKL +DSKL+ ++  Q
Sbjct  1    MIIHGFCTGTRHKHKLRKTFIMLGAGLGLFFSVNQNSFANGENYFKLRADSKLINNNIAQ  60

Query  61   NRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAAPGQQIILPLKKLPFE  120
            +RLFYTLKTGE+VA+LSKSQ+I+++ IWSLNKHLYSSESEMMKA+PGQQIILPLKKL+ E
Sbjct  61   DRLFYTLKTGESVAQLSKSQGISVPVIWSLNKHLYSSESEMMKASPGQQIILPLKKLSAE  120

Query  121  YSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYaaqqaaslgsqlqsr  180
            YS+LP+LG+AP+VAA++VAGHT+K   MS D TKSN +DDKALNYAAQQAASLGSQLQSR
Sbjct  121  YSTLPILGTAPVVAAADVAGHTKK---MSQDTTKSNTSDDKALNYAAQQAASLGSQLQSR  177

Query  181  slNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM  240
            SLNGDYAKDTAL++AGNQASSQ+QAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYD+E+M
Sbjct  178  SLNGDYAKDTALSMAGNQASSQMQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDTENM  237

Query  241  LAFGQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF  300
            LAFGQVGARYIDSRFTANLGAGQRFFLP NMLGYNVFIDQDFSG+NTRLGIGGEYWRDYF
Sbjct  238  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGNNTRLGIGGEYWRDYF  297

Query  301  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVAL  360
            KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALG+KL+YEQYYGDNVAL
Sbjct  298  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGGKLMYEQYYGDNVAL  357

Query  361  FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIE  420
            FN+DKL SNPGA TVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQF+YQFDK+WSQQIE
Sbjct  358  FNADKLYSNPGAVTVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFHYQFDKPWSQQIE  417

Query  421  PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKY  480
            PQYVNELRTLSGSRYDLVQRNNNIIL+YKKQDILS+NIPH+INGTEHST+KIQLIVKSKY
Sbjct  418  PQYVNELRTLSGSRYDLVQRNNNIILDYKKQDILSMNIPHNINGTEHSTHKIQLIVKSKY  477

Query  481  GLDRIVWDDSALRsqggqiqhsgsqsAQDYQAILPAYVQGGSNIYKVTARAYDRNGNSSN  540
            GL+RIVWDDS+LR+QGGQIQHSGSQSAQDYQAILPAYVQGGSN+YKVTARAYDRNGNSSN
Sbjct  478  GLERIVWDDSTLRTQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN  537

Query  541  NVQLTITVLSNGQVVDQVGVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  600
            NVQLTITVLSNGQVVD+VG+T+FTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI
Sbjct  538  NVQLTITVLSNGQVVDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  597

Query  601  VSGTATLGANSAKTDANGKATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASI  660
            VSGTATL+A+SA+T+++GKATVTLKS  PGQVVVSAKTAEMTSALNA+AVIF DQTKASI
Sbjct  598  VSGTATLSAKSANTNSSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI  657

Query  661  TEIKADKTTAVANGKDAIKYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGR  720
            TEIK DKT A A+ KD+I YTVKVMK G+P++ Q VTFS +FG +N   +T+ATT+++G 
Sbjct  658  TEIKVDKTIATADNKDTIEYTVKVMKGGNPISGQKVTFSKDFGTLN---KTEATTDQNGY  714

Query  721  ATITLTSSSAGKATVSATVSD-GAEVKATEVTFFDELKID-NKVDIIGNNVRGELPNIWL  778
            AT+ L+S+++GKA VSA VS+  +EVKA+ V FF  L ID NKV +IG  V G LP+ WL
Sbjct  715  ATVKLSSGTPGKAIVSAKVSEVNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNWL  774

Query  779  QYGQFKLKASGGDGTYSWYSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKA  838
            QYGQ KL+A+GG+G Y+W S NT IA+VD SG +TLN KGS  I   SGD+Q+ +YTI++
Sbjct  775  QYGQVKLQATGGNGKYTWKSSNTKIASVDNSGVITLNEKGSATITVVSGDNQSATYTINT  834

Query  839  PSYMI----KVDKQAYYADAMSICKNL---LPSTQTVLSDIYDSWGAANKYSHYSSMNSI  891
            P  +I    K+++ A Y++A S C+ +   L+ +++VL +IY  WGAANKY+ YSS NS+
Sbjct  835  PDNIIIAVDKINRMA-YSEAESRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNSL  893

Query  892  TAWIKQTsseqssgvssTYNLITQNPLPRVNVNTPNVYAVCV  933
            TAWIKQ++S+ +SGVS+TY+L+T N+L  V+    N +AVCV
Sbjct  894  TAWIKQSTSDSASGVSNTYDLVTTNSLTNVKATDKNAFAVCV  935

12) eae in NC_013353


> AF311901|30|G30|15723931|AAL06378.1|Citrobacter_rodentium_DBS100|+|24878..27688|-|-|intimin
Length=936

 Score = 1079 bits (4092),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 739/950 (78%), Positives = 849/950 (90%), Gaps = 16/950 (1%)

Query  1    MITHGFYtrtrhkhklkktFIMLSAGLGLFFYVNQNSFANGENYFKLSSDSKLLTQNAAQ  60
            MI HGF T TRHKHKL+KTFIML+AGLGLFF VNQNSFANGENYFKL +DSKL+ +N AQ
Sbjct  1    MIIHGFCTGTRHKHKLRKTFIMLGAGLGLFFSVNQNSFANGENYFKLRADSKLINNNIAQ  60

Query  61   DRLFYTLKTGETVANISKSQGISLSVIWSLNKHLYSSESEMMKAGPGQQIILPLKKLSVE  120
            DRLFYTLKTGE+VA++SKSQGIS++VIWSLNKHLYSSESEMMKA+PGQQIILPLKKLS E
Sbjct  61   DRLFYTLKTGESVAQLSKSQGISVPVIWSLNKHLYSSESEMMKASPGQQIILPLKKLSAE  120

Query  121  YSalpvlgsapvvaaggvagHTNKMTKMSPDATKSNTTDDKALNYaaqqaaslgsqlqsr  180
            YS+LP+LG+APVVAA++VAGHT+KM   S D+TKSNT+DDKALNYAAQQAASLGSQLQSR
Sbjct  121  YSTLPILGTAPVVAAADVAGHTKKM---SQDTTKSNTSDDKALNYAAQQAASLGSQLQSR  177

Query  181  slNGDYAKDTalgmassqassqlqawlqHYGTAEVNLQSGNNFDGSSLDFLLPFYDSENM  240
            SLNGDYAKDTAL+MA++QASSQ+QAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYD+ENM
Sbjct  178  SLNGDYAKDTALSMAGNQASSQMQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDTENM  237

Query  241  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF  300
            LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSG+NTRLGIGGEYWRDYF
Sbjct  238  LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGNNTRLGIGGEYWRDYF  297

Query  301  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDNVAL  360
            KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALG+KLMYEQYYGDNVAL
Sbjct  298  KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGGKLMYEQYYGDNVAL  357

Query  361  FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKPWSQQIE  420
            FN+DKL SNPGA TVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQF+YQFDKPWSQQIE
Sbjct  358  FNADKLYSNPGAVTVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFHYQFDKPWSQQIE  417

Query  421  PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKY  480
            PQYVNELRTLSGSRYDLVQRNNNIIL+YKKQDILS+NIPH+INGTEHST+KIQLIVKSKY
Sbjct  418  PQYVNELRTLSGSRYDLVQRNNNIILDYKKQDILSMNIPHNINGTEHSTHKIQLIVKSKY  477

Query  481  GLDRIVWDDSALRsqggqiqhsgsqsAQDYQAILPAYVQGGSNIYKVTARAYDRNGNSSN  540
            GL+RIVWDDS+LR+QGGQIQHSGSQSAQDYQAILPAYVQGGSN+YKVTARAYDRNGNSSN
Sbjct  478  GLERIVWDDSTLRTQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN  537

Query  541  NVQLTITVLPNGQVVDQVGVTDFTADKTSAKADNVDTITYTATVKKNGVAQANAPVTFSI  600
            NVQLTITVL+NGQVVD+VG+T+FTADKTSAKADN DTITYTATVKKNGVAQAN PV+F+I
Sbjct  538  NVQLTITVLSNGQVVDKVGITNFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI  597

Query  601  VSGTATLGANSAKTDGNGKATVTLKSGTPGQVVVSAKTAEMTSPLNASAVIFVDQTKASI  660
            VSGTATL+A+SA+T+++GKATVTLKS+ PGQVVVSAKTAEMTS+LNA+AVIFVDQTKASI
Sbjct  598  VSGTATLSAKSANTNSSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI  657

Query  661  TEIKADKTTAKANGSDAITYIVKVMKNNQPEANHSVTFSTNFGNLGGNSNTQIVKTDKDG  720
            TEIK DKT A A+  D+I Y VKVMK  +P + + VTFS +FG L     T    TD++G
Sbjct  658  TEIKVDKTIATADNKDTIEYTVKVMKGGNPISGQKVTFSKDFGTLNKTEAT----TDQNG  713

Query  721  RATVKLTSGVAGNAVVSAKVSEVNTEVKAPEVKFFSVLSIDSN-VSIIGTSANGALPNIW  779
             ATVKL+SG +G+A+VSAKVSEVNTEVKA+ V FF+ LSID+N V++IGT+  G+LP+ W
Sbjct  714  YATVKLSSGTPGKAIVSAKVSEVNTEVKAATVEFFAPLSIDGNKVTVIGTGVTGSLPKNW  773

Query  780  LRYGQFKLTAKGGDGKYQWRSQDPSVASVDALTGRVTLLKKGTTTIEVVSGDNQTAMYTI  839
            L+YGQ KL A GG+GKY W+S +  +ASVD  +G +TL  KG++TI VVSGDNQ+A YTI
Sbjct  774  LQYGQVKLQATGGNGKYTWKSSNTKIASVDN-SGVITLNEKGSATITVVSGDNQSATYTI  832

Query  840  NTPTK-FISVETQNKVVYSDAEATCRMNNARLPSSTSELKDVYNKWGAANSYEGYKGKKT  898
            NTP + +I+V+  N++ YS+AE+ C+  ++ L+ S S L ++Y+KWGAAN Y  Y + ++
Sbjct  833  NTPDNIIIAVDKINRMAYSEAESRCQAISSNLAQSKSVLENIYSKWGAANKYPYYSSSNS  892

Query  899  ITAWTQQTEDDKQKGWTSTFDIVTKNEIPSNGSNSKVHVNKANAFAVCVR  948
            +TAW +Q+  D   G ++T+D+VT N +      ++V     NAFAVCV+
Sbjct  893  LTAWIKQSTSDSASGVSNTYDLVTTNSL------TNVKATDKNAFAVCVK  936