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Homologs of tir gene of AF200363

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) tir
( YP_003223468.1 )

translocated intimin receptor Tir

NC_013353
(Escherichia coli 12009)

0.0

2) tir
( YP_003232160.1 )

translocated intimin receptor Tir

NC_013361
(Escherichia coli 11368)

5e-180

3) tir
( YP_002331403.1 )

translocated intimin receptor Tir

NC_011601
(Escherichia coli E2348/69)

5e-120

4) tir
( YP_003501867.1 )

translocated intimin receptor Tir

NC_013941
(Escherichia coli CB9615)

2e-115

5) ECO55CA74_21195
( YP_006161344.1 )

translocated intimin receptor Tir

NC_017656
(Escherichia coli RM12579)

2e-115

6) ECH74115_5056
( YP_002273160.1 )

Tir

NC_011353
(Escherichia coli EC4115)

5e-115

7) tir
( NP_290261.1 )

translocated intimin receptor protein

NC_002655
(Escherichia coli EDL933)

5e-115

8) ECs4561
( NP_312588.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

5e-115

9) tir
( YP_003080473.1 )

translocated intimin receptor protein

NC_013008
(Escherichia coli TW14359)

5e-115

10) CDCO157_4295
( YP_006315161.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

5e-115

11) tir
( YP_003366495.1 )

Tir, translocated intimin receptor

NC_013716
(Citrobacter rodentium ICC168)

2e-98

12) tir
( YP_003236081.1 )

putative translocated intimin receptor Tir

NC_013364
(Escherichia coli 11128)

3e-97

• Sequence Alignments

1) tir in NC_013353


> AF200363|30|G29|13447723|AAK26722.1|Escherichia_coli_RDEC-1|+|23100..24716|tir|-|Tir
Length=538

 Score =  638 bits (2413),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 524/538 (98%), Positives = 536/538 (99%), Gaps = 0/538 (0%)

Query  1    MPIGNLGHNPNVRALIPPAPPLPSQTDGAGGARNQLINSNGPMGSRLLFTPIRNsvadaa  60
            MPIGNLGHN+NVRALIPPAPPLPSQTDGAGGARNQLINSNGPMGSRLLFTPIRNSVADAA
Sbjct  1    MPIGNLGHNSNVRALIPPAPPLPSQTDGAGGARNQLINSNGPMGSRLLFTPIRNSVADAA  60

Query  61   dsrasdIPGLPTNPLRFAASEVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHV  120
            DSRASDIPGLPTNPLRFAASEVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHV
Sbjct  61   DSRASDIPGLPTNPLRFAASEVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHV  120

Query  121  AIGQKNGLETTVVLSDQEFSSLQSLDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRI  180
            AIGQKNGLETTVVLS+QEFSSLQSLDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRI
Sbjct  121  AIGQKNGLETTVVLSEQEFSSLQSLDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRI  180

Query  181  IDKLEPKDTKETKEPGDPNSGEGKIIEIHtststssLRADPKLWLSLGTIAAGLIGMAAT  240
            IDKLEPKDTKETKEPGDPNSGEGKIIEIHTSTSTSSLRADPKLWLSLGTIAAGLIGMAAT
Sbjct  181  IDKLEPKDTKETKEPGDPNSGEGKIIEIHTSTSTSSLRADPKLWLSLGTIAAGLIGMAAT  240

Query  241  GIAQAVALtpepddptttdpdtaastaeaatKDRLTQEAFQDPDKQKVNIDENGNAIPSG  300
            GIAQAVALTPEPDDP TTDPD+AA+TAEAA+KD+LT+EAFQ+PD+QKVNIDENGNAIPSG
Sbjct  241  GIAQAVALTPEPDDPITTDPDAAANTAEAAAKDQLTKEAFQNPDNQKVNIDENGNAIPSG  300

Query  301  ELIDDVVAQIAEQAKAAGEQARQEAIESNSQAQKKYDEQHAKREQEMSLSSGVgygisga  360
            EL DDVVAQIAEQAKAAGEQARQEAIESNSQAQ+KYDEQHAKREQEMSLSSGVGYGISGA
Sbjct  301  ELKDDVVAQIAEQAKAAGEQARQEAIESNSQAQQKYDEQHAKREQEMSLSSGVGYGISGA  360

Query  361  lilgggigagvtaalHRKNQPAEQTITTRTVVDNQPTNNASAQGNTDTSGPEEspasrrn  420
            LILGGGIGAGVTAALHRKNQPAEQTITTRTVVDNQPTNNASAQGNTDTSGPEESPASRRN
Sbjct  361  LILGGGIGAGVTAALHRKNQPAEQTITTRTVVDNQPTNNASAQGNTDTSGPEESPASRRN  420

Query  421  snaslasngsDTSSTGTVENPYADVGMPRNDSLARIPEEPIYDEVAADPNYSVIQHFSGN  480
            SNASLASNGSDTSSTGTVENPYADVGMPRNDSLARI+EEPIYDEVAADPNYSVIQHFSGN
Sbjct  421  SNASLASNGSDTSSTGTVENPYADVGMPRNDSLARISEEPIYDEVAADPNYSVIQHFSGN  480

Query  481  SPVTGRLVGTPGQGIQSTYallassgglrlgmggltgggesaVSTANASPTPGPARFV  538
            SPVTGRLVGTPGQGIQSTYALLASSGGLRLGMGGLTGGGESAVSTANA+PTPGPARFV
Sbjct  481  SPVTGRLVGTPGQGIQSTYALLASSGGLRLGMGGLTGGGESAVSTANAAPTPGPARFV  538

2) tir in NC_013361


> AF200363|30|G29|13447723|AAK26722.1|Escherichia_coli_RDEC-1|+|23100..24716|tir|-|Tir
Length=538

 Score =  623 bits (2356),  Expect = 5e-180, Method: Compositional matrix adjust.
 Identities = 537/538 (99%), Positives = 538/538 (100%), Gaps = 0/538 (0%)

Query  1    MPIGNLGHNPNVRALIPPAPPLPSQTDGAGGARNQLINSNGPMGSRLLFTPIRNsvadaa  60
            MPIGNLGHN+NVRALIPPAPPLPSQTDGAGGARNQLINSNGPMGSRLLFTPIRNSVADAA
Sbjct  1    MPIGNLGHNSNVRALIPPAPPLPSQTDGAGGARNQLINSNGPMGSRLLFTPIRNSVADAA  60

Query  61   dsrasdIPGLPTNPLRFAASEVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHV  120
            DSRASDIPGLPTNPLRFAASEVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHV
Sbjct  61   DSRASDIPGLPTNPLRFAASEVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHV  120

Query  121  AIGQKNGLETTVVlseqefsslqslDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRI  180
            AIGQKNGLETTVVLSEQEFSSLQSLDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRI
Sbjct  121  AIGQKNGLETTVVLSEQEFSSLQSLDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRI  180

Query  181  IDKLEPKDTKETKEPGDPNSGEGKIIEIHtststssLRADPKLWLSLGTIAAGLIGMAAT  240
            IDKLEPKDTKETKEPGDPNSGEGKIIEIHTSTSTSSLRADPKLWLSLGTIAAGLIGMAAT
Sbjct  181  IDKLEPKDTKETKEPGDPNSGEGKIIEIHTSTSTSSLRADPKLWLSLGTIAAGLIGMAAT  240

Query  241  GIAQAVALtpepddpittdpdaaantaeaaaKDQLTKEAFQNPDNQKVNIDENGNAIPSG  300
            GIAQAVALTPEPDDPITTDPDAAANTAEAAAKDQLTKEAFQNPDNQKVNIDENGNAIPSG
Sbjct  241  GIAQAVALTPEPDDPITTDPDAAANTAEAAAKDQLTKEAFQNPDNQKVNIDENGNAIPSG  300

Query  301  ELKDDVVAQIAEQAKAAGEQARQEAIESNSQAQQKYDEQHAKREQEMSLSSGVgygisga  360
            ELKDDVVAQIAEQAKAAGEQARQEAIESNSQAQQKYDEQHAKREQEMSLSSGVGYGISGA
Sbjct  301  ELKDDVVAQIAEQAKAAGEQARQEAIESNSQAQQKYDEQHAKREQEMSLSSGVGYGISGA  360

Query  361  lilgggigagvtaalHRKNQPAEQTITTRTVVDNQPTNNASAQGNTDTSGPEEspasrrn  420
            LILGGGIGAGVTAALHRKNQPAEQTITTRTVVDNQPTNNASAQGNTDTSGPEESPASRRN
Sbjct  361  LILGGGIGAGVTAALHRKNQPAEQTITTRTVVDNQPTNNASAQGNTDTSGPEESPASRRN  420

Query  421  snaslasngsDTSSTGTVENPYADVGMPRNDSLARISEEPIYDEVAADPNYSVIQHFSGN  480
            SNASLASNGSDTSSTGTVENPYADVGMPRNDSLARISEEPIYDEVAADPNYSVIQHFSGN
Sbjct  421  SNASLASNGSDTSSTGTVENPYADVGMPRNDSLARISEEPIYDEVAADPNYSVIQHFSGN  480

Query  481  SPVTGRLVGTPGQGIQSTYallassgglrlgmggltgggesaVSTANAAPTPGPARFV  538
            SPVTGRLVGTPGQGIQSTYALLASSGGLRLGMGGLTGGGESAVSTANAAPTPGPARFV
Sbjct  481  SPVTGRLVGTPGQGIQSTYALLASSGGLRLGMGGLTGGGESAVSTANAAPTPGPARFV  538

3) tir in NC_011601


> AF200363|30|G29|13447723|AAK26722.1|Escherichia_coli_RDEC-1|+|23100..24716|tir|-|Tir
Length=538

 Score =  424 bits (1596),  Expect = 5e-120, Method: Compositional matrix adjust.
 Identities = 349/530 (66%), Positives = 442/530 (84%), Gaps = 18/530 (3%)

Query  24   SQTDGAARGGTGHLISSTGALGSRSLFSPLRNSMADSVDSR--DIPGLPTNPSRLAAATS  81
            SQTDGA+ G+  +LI+S G++GSR LF+P+RNS+AD+ DSR  DIPGLPTNP R+AA  S
Sbjct  24   SQTDGAG-GARNQLINSNGPMGSRLLFTPIRNSVADAADSRASDIPGLPTNPLRFAA--S  80

Query  82   ETCLLGGFEVLHDKGPLDILNTQIGPSAFRVEVQADGTHAAIGEKNGLEVSVTLSPQEWS  141
            E  L G++EVLHDKG LD LN+ IG+S FRVE + DG+H AIG+KNGLE +V LS QE S
Sbjct  81   EVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHVAIGQKNGLETTVVLSEQEFS  140

Query  142  SLQSIDTEGKNRFVFTGGRGGSGHPMVTVASDIAEARTKILAKLDPDNHGGRQPKDVDTR  201
            SLQS+D EGKN+FVFTGGRGG+GH+MVTVASDIAEAR +I+ KL+P +   ++ K+ +  
Sbjct  141  SLQSLDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRIIDKLEPKD--TKETKEPGDP  198

Query  202  SVGVGSASGIDDGVVSETHTSTTNSSVRSDPKFWVSVgaiaaglaglaatgiaqalaltp  261
            + G        +G + E HTST+ SS+R+DPK+W+S+G+IAAGL G+AATGIAQA+ALTP
Sbjct  199  NSG--------EGKIIEIHTSTSTSSLRADPKLWLSLGTIAAGLIGMAATGIAQAVALTP  250

Query  262  epddptttdpdQAANAAESATKDQLTQEAFKNPENQKVNIDANGNAIPSGELKDDIVEQI  321
            EPDDP TTDPD AAN+AE+A+KDQLT+EAF+NP+NQKVNID NGNAIPSGELKDD+V QI
Sbjct  251  EPDDPITTDPDAAANTAEAAAKDQLTKEAFQNPDNQKVNIDENGNAIPSGELKDDVVAQI  310

Query  322  AQQAKEAGEVARQQAVESNAQAQQRYEDQHARRQEELQLSSGIGYGLSSalivaggigag  381
            A+QAK AGE ARQ+A+ESN+QAQQ+Y++QHA+R++E+ LSSG+GYG+S+ALI++GGIGAG
Sbjct  311  AEQAKAAGEQARQEAIESNSQAQQKYDEQHAKREQEMSLSSGVGYGISGALILGGGIGAG  370

Query  382  vttalHRRNQPAEqtttttthtvvqqqtGGNTPAQGGTDATRAEDASLNRRDSQGSVAST  441
            VT+ALHR+NQPAEQT TT T    Q     N++AQG TD++ +E+++ +RR+S++S+AS 
Sbjct  371  VTAALHRKNQPAEQTITTRTVVDNQPT--NNASAQGNTDTSGPEESPASRRNSNASLASN  428

Query  442  HWSDSSSEVV-NPYAEVGGARNSLSAHQPEEHIYDEVAADPGYSVIQNFSGSGPVTGRLI  500
                SS+  V NPYA+VG +RN   A+ +EE IYDEVAADP YSVIQ+FSG++PVTGRL+
Sbjct  429  GSDTSSTGTVENPYADVGMPRNDSLARISEEPIYDEVAADPNYSVIQHFSGNSPVTGRLV  488

Query  501  GTPGQGIQSTYALLANSGGLRLGMGGLTSGGESAVSSVNAAPTPGPVRFV  550
            GTPGQGIQSTYALLA+SGGLRLGMGGLT+GGESAVS+ NAAPTPGP RFV
Sbjct  489  GTPGQGIQSTYALLASSGGLRLGMGGLTGGGESAVSTANAAPTPGPARFV  538

4) tir in NC_013941


> AF200363|30|G29|13447723|AAK26722.1|Escherichia_coli_RDEC-1|+|23100..24716|tir|-|Tir
Length=538

 Score =  409 bits (1538),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 368/558 (66%), Positives = 467/558 (84%), Gaps = 22/558 (3%)

Query  1    MPIGNLGHNPNVNNSIPPAPPLPSQTDGAGG-RGQLINSTGPLGSRALFTPVRNSMADSG  59
            MPIGNLGHN+NV   IPPAPPLPSQTDGAGG R QLINS GP+GSR LFTP+RNS+AD++
Sbjct  1    MPIGNLGHNSNVRALIPPAPPLPSQTDGAGGARNQLINSNGPMGSRLLFTPIRNSVADAA  60

Query  60   DNRASDVPGLPVNPMRLAASEITLNDGFEVLHDHGPLDTLNRQIGSSVFRVETQEDGKHI  119
            D+RASD+PGLP NP+R+AASE++L++++EVLHD G LDTLN  IGSS+FRVET++DG H+
Sbjct  61   DSRASDIPGLPTNPLRFAASEVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHV  120

Query  120  AVGQRNGVETSVVLSDQEYARLQSIDPEGKDKFVFTGGRGGAGHAMVTVASDITEARQRI  179
            A+GQ+NG+ET+VVLS+QE++ LQS+DPEGK+KFVFTGGRGGAGHAMVTVASDI+EARQRI
Sbjct  121  AIGQKNGLETTVVLSEQEFSSLQSLDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRI  180

Query  180  LELLEPKGTGESKGAGESKGVGELRESNSGAENttetqtststssLRSDPKLWLALGTVA  239
            ++ LEPK+T E+K +G         ++NSG  +  E +TSTSTSSLR+DPKLWL+LGT+A
Sbjct  181  IDKLEPKDTKETKEPG---------DPNSGEGKIIEIHTSTSTSSLRADPKLWLSLGTIA  231

Query  240  TGLIGLAATGIVQALALtpepdsptttdpdaaasatetatRDQLTKEAFQNPDNQKVNID  299
            +GLIG+AATGI QA+ALTPEPD P TTDPDAAA+++E+A++DQLTKEAFQNPDNQKVNID
Sbjct  232  AGLIGMAATGIAQAVALTPEPDDPITTDPDAAANTAEAAAKDQLTKEAFQNPDNQKVNID  291

Query  300  ELGNAIPSGVLKDDVVANieeqakaageeakqqaieNNAQAQKKYDEQQAKRQEELKvss  359
            E GNAIPSG LKDDVVA+I EQAKAAGE+A+Q+AIE+N+QAQ+KYDEQ+AKR++E+ +SS
Sbjct  292  ENGNAIPSGELKDDVVAQIAEQAKAAGEQARQEAIESNSQAQQKYDEQHAKREQEMSLSS  351

Query  360  gagyglsgalilgggigvavTAALHRKNQPVEQtttttttttSART-VENKPANNTPAQG  418
            G GYG+SGALILGGGIG +VTAALHRKNQP EQ       T ++RT V+N+P+NN++AQG
Sbjct  352  GVGYGISGALILGGGIGAGVTAALHRKNQPAEQ-------TITTRTVVDNQPTNNASAQG  404

Query  419  NVDTPGSEDtmesrrssmastsstffdtssIGTVQNPYADVKTSLHDSQVPTSNSNTSVQ  478
            N DT+G+E++  SRR+S AS +S   DTSS GTV+NPYADV  + +DS    S+     +
Sbjct  405  NTDTSGPEESPASRRNSNASLASNGSDTSSTGTVENPYADVGMPRNDSLARISEEPIYDE  464

Query  479  NMGNTDSVVYSTIQHPPRDTTDNGARLLGNPSAGIQSTYARLALSGGLRHDMGGLTGGSN  538
              ++ +   YS IQH + ++   G RL+G P+ GIQSTYA LA SGGLR +MGGLTGG++
Sbjct  465  VAADPN---YSVIQHFSGNSPVTG-RLVGTPGQGIQSTYALLASSGGLRLGMGGLTGGGE  520

Query  539  SAVNTSNNPPAPGSHRFV  556
            SAV+T+N +P+PG+ RFV
Sbjct  521  SAVSTANAAPTPGPARFV  538

5) ECO55CA74_21195 in NC_017656


> AF200363|30|G29|13447723|AAK26722.1|Escherichia_coli_RDEC-1|+|23100..24716|tir|-|Tir
Length=538

 Score =  409 bits (1539),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 364/564 (65%), Positives = 468/564 (83%), Gaps = 28/564 (4%)

Query  1    MPIGNLGHNPNVNNSIPPAPPLPSQTDGAGG-RGQLINSTGPLGSRALFTPVRNSMADSG  59
            MPIGNLGHN+NV   IPPAPPLPSQTDGAGG R QLINS GP+GSR LFTP+RNS+AD++
Sbjct  1    MPIGNLGHNSNVRALIPPAPPLPSQTDGAGGARNQLINSNGPMGSRLLFTPIRNSVADAA  60

Query  60   DNRASDVPGLPVNPMRLAASEITLNDGFEVLHDHGPLDTLNRQIGSSVFRVETQEDGKHI  119
            D+RASD+PGLP NP+R+AASE++L++++EVLHD G LDTLN  IGSS+FRVET++DG H+
Sbjct  61   DSRASDIPGLPTNPLRFAASEVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHV  120

Query  120  AVGQRNGVETSVVLSDQEYARLQSIDPEGKDKFVFTGGRGGAGHAMVTVASDITEARQRI  179
            A+GQ+NG+ET+VVLS+QE++ LQS+DPEGK+KFVFTGGRGGAGHAMVTVASDI+EARQRI
Sbjct  121  AIGQKNGLETTVVLSEQEFSSLQSLDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRI  180

Query  180  LELLEPKGTGESKGAGESKGAGESKGVGELRESNSGAENttetqtststssLRSDPKLWL  239
            ++ LEPK+T E+K +G+++ +GE+K + E++ S S +             SLR+DPKLWL
Sbjct  181  IDKLEPKDTKETKEPGDPN-SGEGK-IIEIHTSTSTS-------------SLRADPKLWL  225

Query  240  ALGTVATGLIGLAATGIVQALALtpepdsptttdpdaaasatetatRDQLTKEAFQNPDN  299
            +LGT+A+GLIG+AATGI QA+ALTPEPD P TTDPDAAA+++E+A++DQLTKEAFQNPDN
Sbjct  226  SLGTIAAGLIGMAATGIAQAVALTPEPDDPITTDPDAAANTAEAAAKDQLTKEAFQNPDN  285

Query  300  QKVNIDELGNAIPSGVLKDDVVANieeqakaageeakqqaieNNAQAQKKYDEQQAKRQE  359
            QKVNIDE GNAIPSG LKDDVVA+I EQAKAAGE+A+Q+AIE+N+QAQ+KYDEQ+AKR++
Sbjct  286  QKVNIDENGNAIPSGELKDDVVAQIAEQAKAAGEQARQEAIESNSQAQQKYDEQHAKREQ  345

Query  360  ELKvssgagyglsgalilgggigvavTAALHRKNQPVEQtttttttttSART-VENKPAN  418
            E+ +SSG GYG+SGALILGGGIG +VTAALHRKNQP EQ       T ++RT V+N+P+N
Sbjct  346  EMSLSSGVGYGISGALILGGGIGAGVTAALHRKNQPAEQ-------TITTRTVVDNQPTN  398

Query  419  NTPAQGNVDTPGSEDtmesrrssmastsstffdtssIGTVQNPYADVKTSLHDSQVPTSN  478
            N++AQGN DT+G+E++  SRR+S AS +S   DTSS GTV+NPYADV  + +DS    S+
Sbjct  399  NASAQGNTDTSGPEESPASRRNSNASLASNGSDTSSTGTVENPYADVGMPRNDSLARISE  458

Query  479  SNTSVQNMGNTDSVVYSTIQHPPRDTTDNGARLLGNPSAGIQSTYARLALSGGLRHDMGG  538
                 +  ++ +   YS IQH + ++   G RL+G P+ GIQSTYA LA SGGLR +MGG
Sbjct  459  EPIYDEVAADPN---YSVIQHFSGNSPVTG-RLVGTPGQGIQSTYALLASSGGLRLGMGG  514

Query  539  LTGGSNSAVNTSNNPPAPGSHRFV  562
            LTGG++SAV+T+N +P+PG+ RFV
Sbjct  515  LTGGGESAVSTANAAPTPGPARFV  538

6) ECH74115_5056 in NC_011353


> AF200363|30|G29|13447723|AAK26722.1|Escherichia_coli_RDEC-1|+|23100..24716|tir|-|Tir
Length=538

 Score =  408 bits (1534),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 368/560 (66%), Positives = 467/560 (84%), Gaps = 24/560 (4%)

Query  1    MPIGNLGHNPNVNNSIPPAPPLPSQTDGAGG-RGQLINSTGPLGSRALFTPVRNSMADSG  59
            MPIGNLGHN+NV   IPPAPPLPSQTDGAGG R QLINS GP+GSR LFTP+RNS+AD++
Sbjct  1    MPIGNLGHNSNVRALIPPAPPLPSQTDGAGGARNQLINSNGPMGSRLLFTPIRNSVADAA  60

Query  60   DNRASDVPGLPVNPMRLAASEITLNDGFEVLHDHGPLDTLNRQIGSSVFRVETQEDGKHI  119
            D+RASD+PGLP NP+R+AASE++L++++EVLHD G LDTLN  IGSS+FRVET++DG H+
Sbjct  61   DSRASDIPGLPTNPLRFAASEVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHV  120

Query  120  AVGQRNGVETSVVLSDQEYARLQSIDPEGKDKFVFTGGRGGAGHAMVTVASDITEARQRI  179
            A+GQ+NG+ET+VVLS+QE++ LQS+DPEGK+KFVFTGGRGGAGHAMVTVASDI+EARQRI
Sbjct  121  AIGQKNGLETTVVLSEQEFSSLQSLDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRI  180

Query  180  LELLEPKGTGESKGAGESKGVGELRESNSGAENttetqtststssLRSDPKLWLALGTVA  239
            ++ LEPK+T E+K +G         ++NSG  +  E +TSTSTSSLR+DPKLWL+LGT+A
Sbjct  181  IDKLEPKDTKETKEPG---------DPNSGEGKIIEIHTSTSTSSLRADPKLWLSLGTIA  231

Query  240  TGLIGLAATGIVQALALtpepdsptttdpdaaasatetatRDQLTKEAFQNPDNQKVNID  299
            +GLIG+AATGI QA+ALTPEPD P TTDPDAAA+++E+A++DQLTKEAFQNPDNQKVNID
Sbjct  232  AGLIGMAATGIAQAVALTPEPDDPITTDPDAAANTAEAAAKDQLTKEAFQNPDNQKVNID  291

Query  300  ELGNAIPSGVLKDDVVANieeqakaageeakqqaieNNAQAQKKYDEQQAKRQEELKvss  359
            E GNAIPSG LKDDVVA+I EQAKAAGE+A+Q+AIE+N+QAQ+KYDEQ+AKR++E+ +SS
Sbjct  292  ENGNAIPSGELKDDVVAQIAEQAKAAGEQARQEAIESNSQAQQKYDEQHAKREQEMSLSS  351

Query  360  gagyglsgalilgggigvavTAALHRKNQPVEQtttttttttttSART-VENKPANNTPA  418
            G GYG+SGALILGGGIG +VTAALHRKNQP EQ         T ++RT V+N+P+NN++A
Sbjct  352  GVGYGISGALILGGGIGAGVTAALHRKNQPAEQ---------TITTRTVVDNQPTNNASA  402

Query  419  QGNVDTPGSEDtmesrrssmastsstffdtssIGTVQNPYADVKTSLHDSQVPTSNSNTS  478
            QGN DT+G+E++  SRR+S AS +S   DTSS GTV+NPYADV  + +DS    S+    
Sbjct  403  QGNTDTSGPEESPASRRNSNASLASNGSDTSSTGTVENPYADVGMPRNDSLARISEEPIY  462

Query  479  VQNMGNTDSVVYSTIQHPPRDTTDNGARLLGNPSAGIQSTYARLALSGGLRHDMGGLTGG  538
             +  ++ +   YS IQH + ++   G RL+G P+ GIQSTYA LA SGGLR +MGGLTGG
Sbjct  463  DEVAADPN---YSVIQHFSGNSPVTG-RLVGTPGQGIQSTYALLASSGGLRLGMGGLTGG  518

Query  539  SNSAVNTSNNPPAPGSHRFV  558
            ++SAV+T+N +P+PG+ RFV
Sbjct  519  GESAVSTANAAPTPGPARFV  538

7) tir in NC_002655


> AF200363|30|G29|13447723|AAK26722.1|Escherichia_coli_RDEC-1|+|23100..24716|tir|-|Tir
Length=538

 Score =  408 bits (1534),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 368/560 (66%), Positives = 467/560 (84%), Gaps = 24/560 (4%)

Query  1    MPIGNLGHNPNVNNSIPPAPPLPSQTDGAGG-RGQLINSTGPLGSRALFTPVRNSMADSG  59
            MPIGNLGHN+NV   IPPAPPLPSQTDGAGG R QLINS GP+GSR LFTP+RNS+AD++
Sbjct  1    MPIGNLGHNSNVRALIPPAPPLPSQTDGAGGARNQLINSNGPMGSRLLFTPIRNSVADAA  60

Query  60   DNRASDVPGLPVNPMRLAASEITLNDGFEVLHDHGPLDTLNRQIGSSVFRVETQEDGKHI  119
            D+RASD+PGLP NP+R+AASE++L++++EVLHD G LDTLN  IGSS+FRVET++DG H+
Sbjct  61   DSRASDIPGLPTNPLRFAASEVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHV  120

Query  120  AVGQRNGVETSVVLSDQEYARLQSIDPEGKDKFVFTGGRGGAGHAMVTVASDITEARQRI  179
            A+GQ+NG+ET+VVLS+QE++ LQS+DPEGK+KFVFTGGRGGAGHAMVTVASDI+EARQRI
Sbjct  121  AIGQKNGLETTVVLSEQEFSSLQSLDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRI  180

Query  180  LELLEPKGTGESKGAGESKGVGELRESNSGAENttetqtststssLRSDPKLWLALGTVA  239
            ++ LEPK+T E+K +G         ++NSG  +  E +TSTSTSSLR+DPKLWL+LGT+A
Sbjct  181  IDKLEPKDTKETKEPG---------DPNSGEGKIIEIHTSTSTSSLRADPKLWLSLGTIA  231

Query  240  TGLIGLAATGIVQALALtpepdsptttdpdaaasatetatRDQLTKEAFQNPDNQKVNID  299
            +GLIG+AATGI QA+ALTPEPD P TTDPDAAA+++E+A++DQLTKEAFQNPDNQKVNID
Sbjct  232  AGLIGMAATGIAQAVALTPEPDDPITTDPDAAANTAEAAAKDQLTKEAFQNPDNQKVNID  291

Query  300  ELGNAIPSGVLKDDVVANieeqakaageeakqqaieNNAQAQKKYDEQQAKRQEELKvss  359
            E GNAIPSG LKDDVVA+I EQAKAAGE+A+Q+AIE+N+QAQ+KYDEQ+AKR++E+ +SS
Sbjct  292  ENGNAIPSGELKDDVVAQIAEQAKAAGEQARQEAIESNSQAQQKYDEQHAKREQEMSLSS  351

Query  360  gagyglsgalilgggigvavTAALHRKNQPVEQtttttttttttSART-VENKPANNTPA  418
            G GYG+SGALILGGGIG +VTAALHRKNQP EQ         T ++RT V+N+P+NN++A
Sbjct  352  GVGYGISGALILGGGIGAGVTAALHRKNQPAEQ---------TITTRTVVDNQPTNNASA  402

Query  419  QGNVDTPGSEDtmesrrssmastsstffdtssIGTVQNPYADVKTSLHDSQVPTSNSNTS  478
            QGN DT+G+E++  SRR+S AS +S   DTSS GTV+NPYADV  + +DS    S+    
Sbjct  403  QGNTDTSGPEESPASRRNSNASLASNGSDTSSTGTVENPYADVGMPRNDSLARISEEPIY  462

Query  479  VQNMGNTDSVVYSTIQHPPRDTTDNGARLLGNPSAGIQSTYARLALSGGLRHDMGGLTGG  538
             +  ++ +   YS IQH + ++   G RL+G P+ GIQSTYA LA SGGLR +MGGLTGG
Sbjct  463  DEVAADPN---YSVIQHFSGNSPVTG-RLVGTPGQGIQSTYALLASSGGLRLGMGGLTGG  518

Query  539  SNSAVNTSNNPPAPGSHRFV  558
            ++SAV+T+N +P+PG+ RFV
Sbjct  519  GESAVSTANAAPTPGPARFV  538

8) ECs4561 in NC_002695


> AF200363|30|G29|13447723|AAK26722.1|Escherichia_coli_RDEC-1|+|23100..24716|tir|-|Tir
Length=538

 Score =  408 bits (1534),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 368/560 (66%), Positives = 467/560 (84%), Gaps = 24/560 (4%)

Query  1    MPIGNLGHNPNVNNSIPPAPPLPSQTDGAGG-RGQLINSTGPLGSRALFTPVRNSMADSG  59
            MPIGNLGHN+NV   IPPAPPLPSQTDGAGG R QLINS GP+GSR LFTP+RNS+AD++
Sbjct  1    MPIGNLGHNSNVRALIPPAPPLPSQTDGAGGARNQLINSNGPMGSRLLFTPIRNSVADAA  60

Query  60   DNRASDVPGLPVNPMRLAASEITLNDGFEVLHDHGPLDTLNRQIGSSVFRVETQEDGKHI  119
            D+RASD+PGLP NP+R+AASE++L++++EVLHD G LDTLN  IGSS+FRVET++DG H+
Sbjct  61   DSRASDIPGLPTNPLRFAASEVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHV  120

Query  120  AVGQRNGVETSVVLSDQEYARLQSIDPEGKDKFVFTGGRGGAGHAMVTVASDITEARQRI  179
            A+GQ+NG+ET+VVLS+QE++ LQS+DPEGK+KFVFTGGRGGAGHAMVTVASDI+EARQRI
Sbjct  121  AIGQKNGLETTVVLSEQEFSSLQSLDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRI  180

Query  180  LELLEPKGTGESKGAGESKGVGELRESNSGAENttetqtststssLRSDPKLWLALGTVA  239
            ++ LEPK+T E+K +G         ++NSG  +  E +TSTSTSSLR+DPKLWL+LGT+A
Sbjct  181  IDKLEPKDTKETKEPG---------DPNSGEGKIIEIHTSTSTSSLRADPKLWLSLGTIA  231

Query  240  TGLIGLAATGIVQALALtpepdsptttdpdaaasatetatRDQLTKEAFQNPDNQKVNID  299
            +GLIG+AATGI QA+ALTPEPD P TTDPDAAA+++E+A++DQLTKEAFQNPDNQKVNID
Sbjct  232  AGLIGMAATGIAQAVALTPEPDDPITTDPDAAANTAEAAAKDQLTKEAFQNPDNQKVNID  291

Query  300  ELGNAIPSGVLKDDVVANieeqakaageeakqqaieNNAQAQKKYDEQQAKRQEELKvss  359
            E GNAIPSG LKDDVVA+I EQAKAAGE+A+Q+AIE+N+QAQ+KYDEQ+AKR++E+ +SS
Sbjct  292  ENGNAIPSGELKDDVVAQIAEQAKAAGEQARQEAIESNSQAQQKYDEQHAKREQEMSLSS  351

Query  360  gagyglsgalilgggigvavTAALHRKNQPVEQtttttttttttSART-VENKPANNTPA  418
            G GYG+SGALILGGGIG +VTAALHRKNQP EQ         T ++RT V+N+P+NN++A
Sbjct  352  GVGYGISGALILGGGIGAGVTAALHRKNQPAEQ---------TITTRTVVDNQPTNNASA  402

Query  419  QGNVDTPGSEDtmesrrssmastsstffdtssIGTVQNPYADVKTSLHDSQVPTSNSNTS  478
            QGN DT+G+E++  SRR+S AS +S   DTSS GTV+NPYADV  + +DS    S+    
Sbjct  403  QGNTDTSGPEESPASRRNSNASLASNGSDTSSTGTVENPYADVGMPRNDSLARISEEPIY  462

Query  479  VQNMGNTDSVVYSTIQHPPRDTTDNGARLLGNPSAGIQSTYARLALSGGLRHDMGGLTGG  538
             +  ++ +   YS IQH + ++   G RL+G P+ GIQSTYA LA SGGLR +MGGLTGG
Sbjct  463  DEVAADPN---YSVIQHFSGNSPVTG-RLVGTPGQGIQSTYALLASSGGLRLGMGGLTGG  518

Query  539  SNSAVNTSNNPPAPGSHRFV  558
            ++SAV+T+N +P+PG+ RFV
Sbjct  519  GESAVSTANAAPTPGPARFV  538

9) tir in NC_013008


> AF200363|30|G29|13447723|AAK26722.1|Escherichia_coli_RDEC-1|+|23100..24716|tir|-|Tir
Length=538

 Score =  408 bits (1534),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 368/560 (66%), Positives = 467/560 (84%), Gaps = 24/560 (4%)

Query  1    MPIGNLGHNPNVNNSIPPAPPLPSQTDGAGG-RGQLINSTGPLGSRALFTPVRNSMADSG  59
            MPIGNLGHN+NV   IPPAPPLPSQTDGAGG R QLINS GP+GSR LFTP+RNS+AD++
Sbjct  1    MPIGNLGHNSNVRALIPPAPPLPSQTDGAGGARNQLINSNGPMGSRLLFTPIRNSVADAA  60

Query  60   DNRASDVPGLPVNPMRLAASEITLNDGFEVLHDHGPLDTLNRQIGSSVFRVETQEDGKHI  119
            D+RASD+PGLP NP+R+AASE++L++++EVLHD G LDTLN  IGSS+FRVET++DG H+
Sbjct  61   DSRASDIPGLPTNPLRFAASEVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHV  120

Query  120  AVGQRNGVETSVVLSDQEYARLQSIDPEGKDKFVFTGGRGGAGHAMVTVASDITEARQRI  179
            A+GQ+NG+ET+VVLS+QE++ LQS+DPEGK+KFVFTGGRGGAGHAMVTVASDI+EARQRI
Sbjct  121  AIGQKNGLETTVVLSEQEFSSLQSLDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRI  180

Query  180  LELLEPKGTGESKGAGESKGVGELRESNSGAENttetqtststssLRSDPKLWLALGTVA  239
            ++ LEPK+T E+K +G         ++NSG  +  E +TSTSTSSLR+DPKLWL+LGT+A
Sbjct  181  IDKLEPKDTKETKEPG---------DPNSGEGKIIEIHTSTSTSSLRADPKLWLSLGTIA  231

Query  240  TGLIGLAATGIVQALALtpepdsptttdpdaaasatetatRDQLTKEAFQNPDNQKVNID  299
            +GLIG+AATGI QA+ALTPEPD P TTDPDAAA+++E+A++DQLTKEAFQNPDNQKVNID
Sbjct  232  AGLIGMAATGIAQAVALTPEPDDPITTDPDAAANTAEAAAKDQLTKEAFQNPDNQKVNID  291

Query  300  ELGNAIPSGVLKDDVVANieeqakaageeakqqaieNNAQAQKKYDEQQAKRQEELKvss  359
            E GNAIPSG LKDDVVA+I EQAKAAGE+A+Q+AIE+N+QAQ+KYDEQ+AKR++E+ +SS
Sbjct  292  ENGNAIPSGELKDDVVAQIAEQAKAAGEQARQEAIESNSQAQQKYDEQHAKREQEMSLSS  351

Query  360  gagyglsgalilgggigvavTAALHRKNQPVEQtttttttttttSART-VENKPANNTPA  418
            G GYG+SGALILGGGIG +VTAALHRKNQP EQ         T ++RT V+N+P+NN++A
Sbjct  352  GVGYGISGALILGGGIGAGVTAALHRKNQPAEQ---------TITTRTVVDNQPTNNASA  402

Query  419  QGNVDTPGSEDtmesrrssmastsstffdtssIGTVQNPYADVKTSLHDSQVPTSNSNTS  478
            QGN DT+G+E++  SRR+S AS +S   DTSS GTV+NPYADV  + +DS    S+    
Sbjct  403  QGNTDTSGPEESPASRRNSNASLASNGSDTSSTGTVENPYADVGMPRNDSLARISEEPIY  462

Query  479  VQNMGNTDSVVYSTIQHPPRDTTDNGARLLGNPSAGIQSTYARLALSGGLRHDMGGLTGG  538
             +  ++ +   YS IQH + ++   G RL+G P+ GIQSTYA LA SGGLR +MGGLTGG
Sbjct  463  DEVAADPN---YSVIQHFSGNSPVTG-RLVGTPGQGIQSTYALLASSGGLRLGMGGLTGG  518

Query  539  SNSAVNTSNNPPAPGSHRFV  558
            ++SAV+T+N +P+PG+ RFV
Sbjct  519  GESAVSTANAAPTPGPARFV  538

10) CDCO157_4295 in NC_017906


> AF200363|30|G29|13447723|AAK26722.1|Escherichia_coli_RDEC-1|+|23100..24716|tir|-|Tir
Length=538

 Score =  408 bits (1534),  Expect = 5e-115, Method: Compositional matrix adjust.
 Identities = 368/560 (66%), Positives = 467/560 (84%), Gaps = 24/560 (4%)

Query  1    MPIGNLGHNPNVNNSIPPAPPLPSQTDGAGG-RGQLINSTGPLGSRALFTPVRNSMADSG  59
            MPIGNLGHN+NV   IPPAPPLPSQTDGAGG R QLINS GP+GSR LFTP+RNS+AD++
Sbjct  1    MPIGNLGHNSNVRALIPPAPPLPSQTDGAGGARNQLINSNGPMGSRLLFTPIRNSVADAA  60

Query  60   DNRASDVPGLPVNPMRLAASEITLNDGFEVLHDHGPLDTLNRQIGSSVFRVETQEDGKHI  119
            D+RASD+PGLP NP+R+AASE++L++++EVLHD G LDTLN  IGSS+FRVET++DG H+
Sbjct  61   DSRASDIPGLPTNPLRFAASEVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHV  120

Query  120  AVGQRNGVETSVVLSDQEYARLQSIDPEGKDKFVFTGGRGGAGHAMVTVASDITEARQRI  179
            A+GQ+NG+ET+VVLS+QE++ LQS+DPEGK+KFVFTGGRGGAGHAMVTVASDI+EARQRI
Sbjct  121  AIGQKNGLETTVVLSEQEFSSLQSLDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRI  180

Query  180  LELLEPKGTGESKGAGESKGVGELRESNSGAENttetqtststssLRSDPKLWLALGTVA  239
            ++ LEPK+T E+K +G         ++NSG  +  E +TSTSTSSLR+DPKLWL+LGT+A
Sbjct  181  IDKLEPKDTKETKEPG---------DPNSGEGKIIEIHTSTSTSSLRADPKLWLSLGTIA  231

Query  240  TGLIGLAATGIVQALALtpepdsptttdpdaaasatetatRDQLTKEAFQNPDNQKVNID  299
            +GLIG+AATGI QA+ALTPEPD P TTDPDAAA+++E+A++DQLTKEAFQNPDNQKVNID
Sbjct  232  AGLIGMAATGIAQAVALTPEPDDPITTDPDAAANTAEAAAKDQLTKEAFQNPDNQKVNID  291

Query  300  ELGNAIPSGVLKDDVVANieeqakaageeakqqaieNNAQAQKKYDEQQAKRQEELKvss  359
            E GNAIPSG LKDDVVA+I EQAKAAGE+A+Q+AIE+N+QAQ+KYDEQ+AKR++E+ +SS
Sbjct  292  ENGNAIPSGELKDDVVAQIAEQAKAAGEQARQEAIESNSQAQQKYDEQHAKREQEMSLSS  351

Query  360  gagyglsgalilgggigvavTAALHRKNQPVEQtttttttttttSART-VENKPANNTPA  418
            G GYG+SGALILGGGIG +VTAALHRKNQP EQ         T ++RT V+N+P+NN++A
Sbjct  352  GVGYGISGALILGGGIGAGVTAALHRKNQPAEQ---------TITTRTVVDNQPTNNASA  402

Query  419  QGNVDTPGSEDtmesrrssmastsstffdtssIGTVQNPYADVKTSLHDSQVPTSNSNTS  478
            QGN DT+G+E++  SRR+S AS +S   DTSS GTV+NPYADV  + +DS    S+    
Sbjct  403  QGNTDTSGPEESPASRRNSNASLASNGSDTSSTGTVENPYADVGMPRNDSLARISEEPIY  462

Query  479  VQNMGNTDSVVYSTIQHPPRDTTDNGARLLGNPSAGIQSTYARLALSGGLRHDMGGLTGG  538
             +  ++ +   YS IQH + ++   G RL+G P+ GIQSTYA LA SGGLR +MGGLTGG
Sbjct  463  DEVAADPN---YSVIQHFSGNSPVTG-RLVGTPGQGIQSTYALLASSGGLRLGMGGLTGG  518

Query  539  SNSAVNTSNNPPAPGSHRFV  558
            ++SAV+T+N +P+PG+ RFV
Sbjct  519  GESAVSTANAAPTPGPARFV  538

11) tir in NC_013716


> AF200363|30|G29|13447723|AAK26722.1|Escherichia_coli_RDEC-1|+|23100..24716|tir|-|Tir
Length=538

 Score =  352 bits (1323),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 338/500 (68%), Positives = 421/500 (85%), Gaps = 16/500 (3%)

Query  52   PLRSSIVDTVDSR--DVPGLPEHPLRFATSETCLHGGFEVLHDKGPLDTLNQKIGSSVFR  109
            P+R+S+ D+ DSR  D+PGLP +PLRFA+SE  LHG++EVLHDKG LDTLN  IGSS+FR
Sbjct  51   PIRNSVADAADSRASDIPGLPTNPLRFAASEVSLHGALEVLHDKGGLDTLNSAIGSSLFR  110

Query  110  VEQQPDGTHAAIGVKDGVEVSVTlnsselqslqslDTEGNGRFVFTGGRGGSGHAMVTVA  169
            VE + DG+H AIG K+G+E +V L+  E+ SLQSLD EG+ +FVFTGGRGG+GHAMVTVA
Sbjct  111  VETRDDGSHVAIGQKNGLETTVVLSEQEFSSLQSLDPEGKNKFVFTGGRGGAGHAMVTVA  170

Query  170  SDISQAREKIIAKLDP-DNHGGRQPKDIDTRSVGVGSASGMGDGvvsethtstttssvrs  228
            SDI++AR++II KL+P D    ++P D ++           G+G + E HTST+TSS+R+
Sbjct  171  SDIAEARQRIIDKLEPKDTKETKEPGDPNS-----------GEGKIIEIHTSTSTSSLRA  219

Query  229  DPKFWVSVgaiaaglaglaatgiVQAVALtpapddptttdpdeaanaaeaatKDQLTKEA  288
            DPK+W+S+G+IAAGL G+AATGI QAVALTP PDDP TTDPD AAN+AEAA+KDQLTKEA
Sbjct  220  DPKLWLSLGTIAAGLIGMAATGIAQAVALTPEPDDPITTDPDAAANTAEAAAKDQLTKEA  279

Query  289  FQNPDNQKVNIDELGNAIPSGELKDDVVAQIADQAKVAGEQARQQAVESNaqaqqrhddq  348
            FQNPDNQKVNIDE GNAIPSGELKDDVVAQIA+QAK AGEQARQ+A+ESN+QAQQ+ D+Q
Sbjct  280  FQNPDNQKVNIDENGNAIPSGELKDDVVAQIAEQAKAAGEQARQEAIESNSQAQQKYDEQ  339

Query  349  qakrqqELDLSSGIGYglssalivgggigagvTAMLHRRNPPTEQTIATTHSVIQQQTGG  408
            +AKR+QE+ LSSG+GYG+S+ALI+GGGIGAGVTA LHR+N P+EQTI TT++V+++Q   
Sbjct  340  HAKREQEMSLSSGVGYGISGALILGGGIGAGVTAALHRKNQPAEQTI-TTRTVVDNQPTN  398

Query  409  NTRAQGGADTTGVENASLTRRDSQASVASTQW-SDTSGDVVNPYAEGWMSRNNPSLLAPE  467
            N+ AQG +DT+G E+++ +RR+S+AS+AS    + ++G V NPYA+  M+RN++    +E
Sbjct  399  NASAQGNTDTSGPEESPASRRNSNASLASNGSDTSSTGTVENPYADVGMPRNDSLARISE  458

Query  468  EPIYDEVAPDPNYSVIQHFSGNNPVTGRLVGSPGQGIQSTYallassgglrlgmggltgg  527
            EPIYDEVA+DPNYSVIQHFSGN+PVTGRLVG+PGQGIQSTYALLASSGGLRLGMGGLTGG
Sbjct  459  EPIYDEVAADPNYSVIQHFSGNSPVTGRLVGTPGQGIQSTYALLASSGGLRLGMGGLTGG  518

Query  528  gesagsaanaaTTPGVERFV  547
            GESA S+ANAA TPG  RFV
Sbjct  519  GESAVSTANAAPTPGPARFV  538

12) tir in NC_013364


> AF200363|30|G29|13447723|AAK26722.1|Escherichia_coli_RDEC-1|+|23100..24716|tir|-|Tir
Length=538

 Score =  349 bits (1309),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 332/531 (63%), Positives = 439/531 (83%), Gaps = 19/531 (3%)

Query  24   SQTDGASRGGAGQLINSTGALGSRLLFSPLRNSIADSVDSR--DIPGLPVHPSRLATATS  81
            SQTDGA+ G+  QLINS G++GSRLLF+P+RNS+AD+ DSR  DIPGLP +P R+  A+S
Sbjct  24   SQTDGAG-GARNQLINSNGPMGSRLLFTPIRNSVADAADSRASDIPGLPTNPLRF--AAS  80

Query  82   EICLLGGFEVLHDKGPLDTLNKQIGASAFRIEQQSDGSYAAIGEKNGVEVSVILNSQELQ  141
            E+ L G++EVLHDKG LDTLN  IG+S FR+E + DGS  AIG+KNG+E +V+L+ QE+ 
Sbjct  81   EVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHVAIGQKNGLETTVVLSEQEFS  140

Query  142  SLQAIDIEDKgrfvftggrggggHSMVTPASDIAEARAKILAKLDPNNHGGSQARNVDTR  201
            SLQ++D E+K +FVFTGGRGG+GH+MVT ASDIAEAR +I+ KL+P++    ++++ +  
Sbjct  141  SLQSLDPEGKNKFVFTGGRGGAGHAMVTVASDIAEARQRIIDKLEPKD--TKETKEPGDP  198

Query  202  SVGVGSASGMddsvvsetrtsstassvrsdPKFWVSigaiaaglaglaatgitqalaltp  261
            + G G    +        +TS+++SS+R+DPK+W+S+G+IAAGL G+AATGI+QA+ALTP
Sbjct  199  NSGEGKIIEI--------HTSTSTSSLRADPKLWLSLGTIAAGLIGMAATGIAQAVALTP  250

Query  262  epddptttdpeQAASAAESATRDQLTQEAFKNPENQKVSIDEIGNSIPSGELKDDVVAKI  321
            EPDDP TTDP+ AA++AE+A++DQLT+EAF+NP+NQKV+IDE GN+IPSGELKDDVVA+I
Sbjct  251  EPDDPITTDPDAAANTAEAAAKDQLTKEAFQNPDNQKVNIDENGNAIPSGELKDDVVAQI  310

Query  322  EEQAKEAGEAARQQAVESNAQAQQRYDTQYARRQEELELSSGIGYslssalivgggigag  381
             EQAK AGE ARQ+A+ESN+QAQQ+YD Q A+R++E+ LSSG+GY++S+ALI+GGGIGAG
Sbjct  311  AEQAKAAGEQARQEAIESNSQAQQKYDEQHAKREQEMSLSSGVGYGISGALILGGGIGAG  370

Query  382  vttalHRRNQPAEqtttttthtvvqqqtGGNTPAQGGTDAIRAEDTSLNRRDSQRSTAST  441
            VT+ALHR+NQPAEQT TT T    Q     N++AQG TD+  +E+++ +RR+S+ S AS 
Sbjct  371  VTAALHRKNQPAEQTITTRTVVDNQPT--NNASAQGNTDTSGPEESPASRRNSNASLASN  428

Query  442  HWSDTSSAVV-NPYAEVGEARNSSPARQAEEHIYDEVAADPNYSVIQNFSGNNQVTGRLM  500
                +S++ V NPYA+VG +RN S AR +EE IYDEVAADPNYSVIQ+FSGN+ VTGRL+
Sbjct  429  GSDTSSTGTVENPYADVGMPRNDSLARISEEPIYDEVAADPNYSVIQHFSGNSPVTGRLV  488

Query  501  GTPGQGIQSTYAILTNNSAglrlgmggltgsggSAVNTANAAPTPGPGRFV  551
            GTPGQGIQSTYA+L+ +S+GLRLGMGGLTG+G SAV+TANAAPTPGP+RFV
Sbjct  489  GTPGQGIQSTYALLA-SSGGLRLGMGGLTGGGESAVSTANAAPTPGPARFV  538