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PAthogenisity Island DataBase (PAI DB)

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Homologs of tcpH gene of X64098

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

• Sequence Alignments

1) O3Y_03845 in NC_016944


> X64098|3|G3|48407|CAA45454.1|Vibrio_cholerae_ssp._classical_01,_Z17561|+|2371..2808|tcpH|-|-
Length=145

 Score =  203 bits (754),  Expect = 5e-54, Method: Compositional matrix adjust.
 Identities = 123/128 (97%), Positives = 126/128 (99%), Gaps = 0/128 (0%)

Query  1    MHKKLKAWGGATGLFVVALGVTIIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT  60
            MHKKLKAWGGA+GLFVVALGVT+IALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT
Sbjct  1    MHKKLKAWGGAAGLFVVALGVTLIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT  60

Query  61   QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSQSNASRDYNVLSIYQLGKGCFLAFPY  120
            QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYS+SN SRDYNVLSIYQLGKGCFLAFPY
Sbjct  61   QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSESNVSRDYNVLSIYQLGKGCFLAFPY  120

Query  121  KLLTAEKM  128
            K LTAEKM
Sbjct  121  KQLTAEKM  128

2) tcpH in NC_012578


> X64098|3|G3|48407|CAA45454.1|Vibrio_cholerae_ssp._classical_01,_Z17561|+|2371..2808|tcpH|-|-
Length=145

 Score =  203 bits (754),  Expect = 5e-54, Method: Compositional matrix adjust.
 Identities = 123/128 (97%), Positives = 126/128 (99%), Gaps = 0/128 (0%)

Query  1    MHKKLKAWGGATGLFVVALGVTIIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT  60
            MHKKLKAWGGA+GLFVVALGVT+IALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT
Sbjct  1    MHKKLKAWGGAAGLFVVALGVTLIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT  60

Query  61   QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSQSNASRDYNVLSIYQLGKGCFLAFPY  120
            QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYS+SN SRDYNVLSIYQLGKGCFLAFPY
Sbjct  61   QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSESNVSRDYNVLSIYQLGKGCFLAFPY  120

Query  121  KLLTAEKM  128
            K LTAEKM
Sbjct  121  KQLTAEKM  128

3) VCD_003501 in NC_012668


> X64098|3|G3|48407|CAA45454.1|Vibrio_cholerae_ssp._classical_01,_Z17561|+|2371..2808|tcpH|-|-
Length=145

 Score =  203 bits (754),  Expect = 5e-54, Method: Compositional matrix adjust.
 Identities = 123/128 (97%), Positives = 126/128 (99%), Gaps = 0/128 (0%)

Query  1    MHKKLKAWGGATGLFVVALGVTIIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT  60
            MHKKLKAWGGA+GLFVVALGVT+IALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT
Sbjct  1    MHKKLKAWGGAAGLFVVALGVTLIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT  60

Query  61   QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSQSNASRDYNVLSIYQLGKGCFLAFPY  120
            QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYS+SN SRDYNVLSIYQLGKGCFLAFPY
Sbjct  61   QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSESNVSRDYNVLSIYQLGKGCFLAFPY  120

Query  121  KLLTAEKM  128
            K LTAEKM
Sbjct  121  KQLTAEKM  128

4) tcpH in NC_016445


> X64098|3|G3|48407|CAA45454.1|Vibrio_cholerae_ssp._classical_01,_Z17561|+|2371..2808|tcpH|-|-
Length=145

 Score =  203 bits (754),  Expect = 5e-54, Method: Compositional matrix adjust.
 Identities = 123/128 (97%), Positives = 126/128 (99%), Gaps = 0/128 (0%)

Query  1    MHKKLKAWGGATGLFVVALGVTIIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT  60
            MHKKLKAWGGA+GLFVVALGVT+IALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT
Sbjct  1    MHKKLKAWGGAAGLFVVALGVTLIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT  60

Query  61   QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSQSNASRDYNVLSIYQLGKGCFLAFPY  120
            QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYS+SN SRDYNVLSIYQLGKGCFLAFPY
Sbjct  61   QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSESNVSRDYNVLSIYQLGKGCFLAFPY  120

Query  121  KLLTAEKM  128
            K LTAEKM
Sbjct  121  KQLTAEKM  128

5) VC0827 in NC_002505


> X64098|3|G3|48407|CAA45454.1|Vibrio_cholerae_ssp._classical_01,_Z17561|+|2371..2808|tcpH|-|-
Length=145

 Score =  203 bits (754),  Expect = 5e-54, Method: Compositional matrix adjust.
 Identities = 123/128 (97%), Positives = 126/128 (99%), Gaps = 0/128 (0%)

Query  1    MHKKLKAWGGATGLFVVALGVTIIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT  60
            MHKKLKAWGGA+GLFVVALGVT+IALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT
Sbjct  1    MHKKLKAWGGAAGLFVVALGVTLIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT  60

Query  61   QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSQSNASRDYNVLSIYQLGKGCFLAFPY  120
            QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYS+SN SRDYNVLSIYQLGKGCFLAFPY
Sbjct  61   QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSESNVSRDYNVLSIYQLGKGCFLAFPY  120

Query  121  KLLTAEKM  128
            K LTAEKM
Sbjct  121  KQLTAEKM  128

6) tcpH in NC_012582


> X64098|3|G3|48407|CAA45454.1|Vibrio_cholerae_ssp._classical_01,_Z17561|+|2371..2808|tcpH|-|-
Length=145

 Score =  180 bits (668),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)

Query  1    MHKKLKAWggaaglfvvalgvtlIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT  60
            MHKKLKAWGGAAGLFVVALGVTLIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT
Sbjct  1    MHKKLKAWGGAAGLFVVALGVTLIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT  60

Query  61   QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSESNVSRDYNVLSIYQLGKGCFLAFPY  120
            QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSESNVSRDYNVLSIYQLGKGCFLAFPY
Sbjct  61   QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSESNVSRDYNVLSIYQLGKGCFLAFPY  120

Query  121  KQLTAEKM  128
            KQLTAEKM
Sbjct  121  KQLTAEKM  128

7) tcpH in NC_009457


> X64098|3|G3|48407|CAA45454.1|Vibrio_cholerae_ssp._classical_01,_Z17561|+|2371..2808|tcpH|-|-
Length=145

 Score =  180 bits (668),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)

Query  1    MHKKLKAWggaaglfvvalgvtlIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT  60
            MHKKLKAWGGAAGLFVVALGVTLIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT
Sbjct  1    MHKKLKAWGGAAGLFVVALGVTLIALPMRQKNSHGTMIIDGTVTQIFSTYQGNLSNVWLT  60

Query  61   QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSESNVSRDYNVLSIYQLGKGCFLAFPY  120
            QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSESNVSRDYNVLSIYQLGKGCFLAFPY
Sbjct  61   QTDPQGNVVKSWTTRYQTLPDPSSQKLNLIPDYSESNVSRDYNVLSIYQLGKGCFLAFPY  120

Query  121  KQLTAEKM  128
            KQLTAEKM
Sbjct  121  KQLTAEKM  128