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Homologs of CMM_0036 gene of NC_009480_P1

107

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) CMM_0036
( YP_001220775.1 )

LacI family transcriptional regulator

NC_009480
(Clavibacter michiganensis NCPPB 382)

4e-151

100

2) CMS_1690
( YP_001710411.1 )

LacI family transcriptional regulator

NC_010407
(Clavibacter michiganensis ATCC33113)

3e-128

3) AAur_3708
( YP_949394.1 )

LacI family transcriptional regulator

NC_008711
(Arthrobacter aurescens TC1)

3e-65

4) lacI2
( YP_006663757.1 )

lactose operon repressor LacI

NC_018531
(Arthrobacter sp. Rue61a)

5e-65

5) SCAB_63941
( YP_003491941.1 )

transcriptional regulator

NC_013929
(Streptomyces scabiei 87.22)

5e-62

6) Sros_6224
( YP_003341696.1 )

PurR family transcriptional regulator

NC_013595
(Streptosporangium roseum DSM 43021)

8e-61

7) Asphe3_03580
( YP_004239707.1 )

LacI family transcriptional regulator

NC_015145
(Arthrobacter phenanthrenivorans Sphe3)

3e-60

8) Jden_0495
( YP_003160462.1 )

transcriptional regulator, LacI family

NC_013174
(Jonesia denitrificans DSM 20603)

5e-59

9) Achl_0371
( YP_002486459.1 )

LacI family transcriptional regulator

NC_011886
(Arthrobacter chlorophenolicus A6)

9e-58

10) AAur_0534
( YP_946342.1 )

LacI family transcriptional regulator

NC_008711
(Arthrobacter aurescens TC1)

2e-57

11) lacI1
( YP_006660478.1 )

lactose operon repressor LacI

NC_018531
(Arthrobacter sp. Rue61a)

4e-57

12) Sked_06900
( YP_003313484.1 )

LacI family transcriptional regulator

NC_013521
(Sanguibacter keddieii DSM 10542)

9e-57

13) Celgi_2588
( YP_004601655.1 )

transcriptional regulator, LacI family

NC_015671
(Cellvibrio gilvus ATCC 13127)

2e-56

14) ACPL_5121
( YP_006268076.1 )

HTH-type transcriptional repressor PurR

NC_017803
(Actinoplanes sp. SE50/110)

4e-56

15) PACID_21090
( YP_006981251.1 )

LacI family transcription regulator

NC_019395
(Propionibacterium acidipropionici ATCC 4875)

5e-56

16) lacI
( YP_001106542.1 )

transcriptional repressor of the lac operon

NC_009142
(Saccharopolyspora erythraea NRRL 2338)

9e-56

17) PALO_00360
( YP_007870069.1 )

LacI family transcription regulator

NC_021064
(Propionibacterium avidum 44067)

3e-55

18) Arth_0219
( YP_829720.1 )

LacI family transcriptional regulator

NC_008541
(Arthrobacter sp. FB24)

4e-55

19) lacI1
( YP_001613720.1 )

lactose operon repressor

NC_010162
(Sorangium cellulosum So ce 56)

4e-55

20) Asphe3_10670
( YP_004240384.1 )

transcriptional regulator

NC_015145
(Arthrobacter phenanthrenivorans Sphe3)

4e-55

21) SCE1572_11980
( YP_008148839.1 )

hypothetical protein

NC_021658
(Sorangium cellulosum So0157-2)

4e-54

22) Arth_1918
( YP_831400.1 )

LacI family transcriptional regulator

NC_008541
(Arthrobacter sp. FB24)

4e-54

23) lacI2
( YP_001613956.1 )

PurR family transcriptional regulator

NC_010162
(Sorangium cellulosum So ce 56)

5e-54

24) Kfla_2927
( YP_003380791.1 )

LacI family transcriptional regulator

NC_013729
(Kribbella flavida DSM 17836)

9e-54

25) SACTE_6513
( YP_004806818.1 )

LacI family transcriptional regulator

NC_015953
(Streptomyces sp. SirexAA-E)

2e-53

26) Snas_2892
( YP_003511660.1 )

LacI family transcriptional regulator

NC_013947
(Stackebrandtia nassauensis DSM 44728)

3e-53

27) Amir_1860
( YP_003099654.1 )

LacI family transcriptional regulator

NC_013093
(Actinosynnema mirum DSM 43827)

6e-53

28) Acel_0870
( YP_872629.1 )

LacI family transcriptional regulator

NC_008578
(Acidothermus cellulolyticus 11B)

2e-52

29) HMPREF9154_0797
( YP_006511103.1 )

putative LacI transcriptional repressor

NC_018142
(Propionibacterium propionicum F0230a)

3e-52

30) lacI2
( YP_003951553.1 )

HTH-type transcriptional repressor

NC_014623
(Stigmatella aurantiaca DW4/3-1)

1e-51

31) Bcav_3275
( YP_002883280.1 )

LacI family transcriptional regulator

NC_012669
(Beutenbergia cavernae DSM 12333)

7e-52

32) RAM_22340
( YP_005532405.1 )

LacI family transcriptional regulator

NC_017186
(Amycolatopsis mediterranei S699)

7e-52

33) AMIS_52240
( YP_005464960.1 )

putative LacI-family transcriptional regulator

NC_017093
(Actinoplanes missouriensis 431)

8e-52

34) B737_4333
( YP_008460665.1 )

LacI family transcriptional regulator

NC_022116
(Amycolatopsis mediterranei RB)

9e-52

35) AMES_4333
( YP_006550814.1 )

LacI family transcriptional regulator

NC_018266
(Amycolatopsis mediterranei S699)

9e-52

36) AMED_4387
( YP_003766560.1 )

LacI family transcriptional regulator

NC_014318
(Amycolatopsis mediterranei U32)

9e-52

37) lacI
( YP_008013308.1 )

LacI family transcriptional regulator

NC_021252
(Amycolatopsis orientalis HCCB10007)

2e-51

38) SC3A7.17
( NP_630441.1 )

transcriptional regulator

NC_003888
(Streptomyces coelicolor A3(2))

4e-51

39) VAB18032_19580
( YP_004405618.1 )

LacI family transcriptional regulator

NC_015434
(Verrucosispora maris AB-18-032)

8e-51

40) B737_4342
( YP_008460674.1 )

LacI family transcriptional regulator

NC_022116
(Amycolatopsis mediterranei RB)

1e-50

41) RAM_22390
( YP_005532415.1 )

LacI family transcriptional regulator

NC_017186
(Amycolatopsis mediterranei S699)

1e-50

42) AMES_4342
( YP_006550823.1 )

LacI family transcriptional regulator

NC_018266
(Amycolatopsis mediterranei S699)

1e-50

43) AMED_4396
( YP_003766569.1 )

LacI family transcriptional regulator

NC_014318
(Amycolatopsis mediterranei U32)

1e-50

44) KSE_74100
( YP_004909121.1 )

putative LacI family transcriptional regulator

NC_016109
(Kitasatospora setae KM-6054)

2e-50

45) Trad_1487
( YP_003705151.1 )

LacI family transcriptional regulator

NC_014221
(Truepera radiovictrix DSM 17093)

3e-50

46) Gobs_0241
( YP_003407417.1 )

LacI family transcriptional regulator

NC_013757
(Geodermatophilus obscurus DSM 43160)

4e-50

47) KSE_73880
( YP_004909099.1 )

putative LacI family transcriptional regulator

NC_016109
(Kitasatospora setae KM-6054)

8e-50

48) Micau_3671
( YP_003836773.1 )

regulatory protein LacI

NC_014391
(Micromonospora aurantiaca ATCC 27029)

2e-49

49) ML5_4727
( YP_004084354.1 )

LacI family transcriptional regulator

NC_014815
(Micromonospora sp. L5)

2e-49

50) Caci_4705
( YP_003115407.1 )

LacI family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

2e-49

51) CMM_2696
( YP_001223441.1 )

hypothetical protein

NC_009480
(Clavibacter michiganensis NCPPB 382)

3e-49

52) Franean1_4680
( YP_001508953.1 )

LacI family transcriptional regulator

NC_009921
(Frankia sp. EAN1.pec)

6e-49

53) L083_4940
( YP_007952930.1 )

regulatory protein LacI

NC_021191
(Actinoplanes sp. N902-109)

6e-49

54) CMN_02655
( YP_007686896.1 )

hypothetical protein

NC_020891
(Clavibacter michiganensis NCPPB 2581)

7e-49

55) AARI_33690
( YP_003918529.1 )

LacI family transcriptional regulator

NC_014550
(Arthrobacter arilaitensis Re117)

2e-48

56) lacI1
( YP_003687635.1 )

arabinose operon repressor

NC_014215
(Propionibacterium freudenreichii CIRM-BIA1)

3e-48

57) Sros_4084
( YP_003339735.1 )

PurR family transcriptional regulator

NC_013595
(Streptosporangium roseum DSM 43021)

4e-48

58) Caci_4997
( YP_003115698.1 )

LacI family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

6e-48

59) MODMU_0250
( YP_006364217.1 )

LacI family transcriptional regulator

NC_017955
(Modestobacter marinus BC501)

6e-48

60) CMS_2671
( YP_001711312.1 )

LacI family transcriptional regulator

NC_010407
(Clavibacter michiganensis ATCC33113)

6e-48

61) Asphe3_10660
( YP_004240383.1 )

transcriptional regulator

NC_015145
(Arthrobacter phenanthrenivorans Sphe3)

7e-48

62) SVEN_6727
( YP_006882272.1 )

Transcriptional regulator, LacI family

NC_018750
(Streptomyces venezuelae ATCC 10712)

2e-47

63) XNR_3314
( YP_007746660.1 )

Transcriptional regulator, LacI family

NC_020990
(Streptomyces albus J1074)

2e-47

64) SACTE_0371
( YP_004800854.1 )

LacI family transcriptional regulator

NC_015953
(Streptomyces sp. SirexAA-E)

1e-46

65) Sfla_5907
( YP_004926811.1 )

LacI family transcriptional regulator

NC_016114
(Streptomyces flavogriseus ATCC 33331)

2e-46

66) SC6D11.07
( NP_631460.1 )

LacI family transcriptional regulator

NC_003888
(Streptomyces coelicolor A3(2))

2e-46

67) SBI_06430
( YP_004964681.1 )

HTH-type transcriptional repressor PurR

NC_016582
(Streptomyces bingchenggensis BCW-1)

3e-46

68) MTES_2070
( YP_004224914.1 )

transcriptional regulator

NC_015125
(Microbacterium testaceum StLB037)

6e-46

69) Caci_4716
( YP_003115418.1 )

LacI family transcriptional regulator

NC_013131
(Catenulispora acidiphila DSM 44928)

7e-46

70) F750_0665
( YP_007857660.1 )

transcriptional regulator

NC_021055
(Streptomyces sp. PAMC26508)

8e-46

71) Celf_0869
( YP_004452394.1 )

LacI family transcriptional regulator

NC_015514
(Cellulomonas fimi ATCC 484)

2e-45

72) SBI_02202
( YP_004960454.1 )

LacI family transcriptional regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

2e-45

73) Cfla_3042
( YP_003638124.1 )

LacI family transcriptional regulator

NC_014151
(Cellulomonas flavigena DSM 20109)

8e-45

74) L083_4358
( YP_007952348.1 )

LacI family transcriptional regulator

NC_021191
(Actinoplanes sp. N902-109)

2e-44

75) L083_3772
( YP_007951762.1 )

regulatory protein LacI

NC_021191
(Actinoplanes sp. N902-109)

5e-44

76) Asphe3_34750
( YP_004242711.1 )

transcriptional regulator

NC_015145
(Arthrobacter phenanthrenivorans Sphe3)

1e-43

77) MTES_2906
( YP_004225750.1 )

transcriptional regulator

NC_015125
(Microbacterium testaceum StLB037)

2e-43

78) FraEuI1c_3466
( YP_004017345.1 )

LacI family transcriptional regulator

NC_014666
(Frankia sp. EuI1c)

4e-43

79) CMS_0130
( YP_001708918.1 )

LacI family transcriptional regulator

NC_010407
(Clavibacter michiganensis ATCC33113)

1e-42

80) CMM_0875
( YP_001221615.1 )

LacI family transcriptional regulator

NC_009480
(Clavibacter michiganensis NCPPB 382)

1e-42

81) AMIS_57680
( YP_005465504.1 )

putative LacI-family transcriptional regulator

NC_017093
(Actinoplanes missouriensis 431)

7e-43

82) Deima_0261
( YP_004169589.1 )

LacI family transcriptional regulator

NC_014958
(Deinococcus maricopensis DSM 21211)

7e-43

83) MSMEI_1668
( YP_006566435.1 )

LacI-type transcriptional regulator

NC_018289
(Mycobacterium smegmatis MC2 155)

8e-43

84) MSMEG_1708
( YP_886084.1 )

ribose operon repressor

NC_008596
(Mycobacterium smegmatis MC2 155)

8e-43

85) CMN_00835
( YP_007685136.1 )

transcriptional regulator, LacI family

NC_020891
(Clavibacter michiganensis NCPPB 2581)

2e-42

86) ACPL_5446
( YP_006268401.1 )

HTH-type transcriptional repressor PurR

NC_017803
(Actinoplanes sp. SE50/110)

2e-42

87) SBI_08330
( YP_004966579.1 )

putative LacI family transcriptional regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

5e-41

88) MTES_2084
( YP_004224928.1 )

transcriptional regulator

NC_015125
(Microbacterium testaceum StLB037)

8e-41

89) Sked_11590
( YP_003313936.1 )

transcriptional regulator

NC_013521
(Sanguibacter keddieii DSM 10542)

1e-40

90) Sked_04300
( YP_003313230.1 )

LacI family transcriptional regulator

NC_013521
(Sanguibacter keddieii DSM 10542)

2e-40

91) Isova_0783
( YP_004541463.1 )

LacI family transcriptional regulator

NC_015588
(Isoptericola variabilis 225)

3e-40

92) Noca_0379
( YP_921609.1 )

LacI family transcriptional regulator

NC_008699
(Nocardioides sp. JS614)

4e-40

93) SCAT_p1151
( YP_004920441.1 )

LacI family transcriptional regulator

NC_016113
(Streptomyces cattleya NRRL 8057)

4e-39

94) SCATT_p05810
( YP_006050727.1 )

transcriptional repressor of the lac operon

NC_017585
(Streptomyces cattleya NRRL 8057)

4e-39

95) SCAB_43681
( YP_003489977.1 )

LacI family transcriptional regulator

NC_013929
(Streptomyces scabiei 87.22)

4e-39

96) VAB18032_18615
( YP_004405425.1 )

LacI family transcriptional regulator

NC_015434
(Verrucosispora maris AB-18-032)

2e-38

97) Xcel_0400
( YP_003324997.1 )

LacI family transcriptional regulator

NC_013530
(Xylanimonas cellulosilytica DSM 15894)

2e-38

98) AMIS_55700
( YP_005465306.1 )

putative LacI-family transcriptional regulator

NC_017093
(Actinoplanes missouriensis 431)

7e-38

99) ACPL_5586
( YP_006268541.1 )

LacI family transcriptional regulator

NC_017803
(Actinoplanes sp. SE50/110)

1e-37

100) Micau_3818
( YP_003836918.1 )

regulatory protein LacI

NC_014391
(Micromonospora aurantiaca ATCC 27029)

5e-37

101) ML5_4598
( YP_004084225.1 )

LacI family transcriptional regulator

NC_014815
(Micromonospora sp. L5)

5e-37

102) Celf_0881
( YP_004452406.1 )

LacI family transcriptional regulator

NC_015514
(Cellulomonas fimi ATCC 484)

6e-37

103) Sfla_0176
( YP_004921161.1 )

LacI family transcriptional regulator

NC_016114
(Streptomyces flavogriseus ATCC 33331)

1e-33

104) Bfae_29490
( YP_003156300.1 )

transcriptional regulator

NC_013172
(Brachybacterium faecium DSM 4810)

2e-33

105) F750_6845
( YP_007863753.1 )

transcriptional regulator

NC_021055
(Streptomyces sp. PAMC26508)

2e-33

106) STH770
( YP_074599.1 )

LacI family transcriptional repressor

NC_006177
(Symbiobacterium thermophilum IAM 14863)

3e-31

107) SBI_09934
( YP_004968183.1 )

putative lacI family transcriptional regulator

NC_016582
(Streptomyces bingchenggensis BCW-1)

3e-27

• Sequence Alignments

1) CMM_0036 in NC_009480


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  527 bits (1988),  Expect = 4e-151, Method: Compositional matrix adjust.
 Identities = 361/361 (100%), Positives = 361/361 (100%), Gaps = 0/361 (0%)

Query  1    MPSTSSSCGTISEQREPSRVGVQVMGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETR  60
            MPSTSSSCGTISEQREPSRVGVQVMGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETR
Sbjct  1    MPSTSSSCGTISEQREPSRVGVQVMGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETR  60

Query  61   ARVEAAIAQLGYRRNTVARALKSKRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEIN  120
            ARVEAAIAQLGYRRNTVARALKSKRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEIN
Sbjct  61   ARVEAAIAQLGYRRNTVARALKSKRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEIN  120

Query  121  LASWQGGAASDLAEMVRRLTDQSVEGVAVIAARQvavdalsdvvadIPMSVVMSGSVSNP  180
            LASWQGGAASDLAEMVRRLTDQSVEGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNP
Sbjct  121  LASWQGGAASDLAEMVRRLTDQSVEGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNP  180

Query  181  RISFVELDQELGARLAVRHLRDLGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQ  240
            RISFVELDQELGARLAVRHLRDLGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQ
Sbjct  181  RISFVELDQELGARLAVRHLRDLGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQ  240

Query  241  LLEGDFTAESGYRGAMELARSSDGLPTAIFAGNDlmalgvlaalaelglsaPDDVSLVGF  300
            LLEGDFTAESGYRGAMELARSSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGF
Sbjct  241  LLEGDFTAESGYRGAMELARSSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGF  300

Query  301  DDIAGADHFIPALTTIRQDFMTLGSSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAPRP  360
            DDIAGADHFIPALTTIRQDFMTLGSSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAPRP
Sbjct  301  DDIAGADHFIPALTTIRQDFMTLGSSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAPRP  360

Query  361  H  361
            H
Sbjct  361  H  361

2) CMS_1690 in NC_010407


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  451 bits (1699),  Expect = 3e-128, Method: Compositional matrix adjust.
 Identities = 309/342 (91%), Positives = 329/342 (97%), Gaps = 0/342 (0%)

Query  2    SKVGVRRMGRAPGMVDVAQIAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTV  61
            S+VGV+ MGRAPGMVDVAQ+AGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTV
Sbjct  18   SRVGVQVMGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTV  77

Query  62   ARALKSKRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGSAASDLAEMVR  121
            ARALKSKRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQG+AASDLAEMVR
Sbjct  78   ARALKSKRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVR  137

Query  122  RLTDQSVEGVAVIAARQVAVDALSDVVTDvpmsvvmsgsvpNPRVGFVELDQELGARLAV  181
            RLTDQSVEGVAVIAARQVAVDALSDVV+D+PMSVVMSGSV+NPR++FVELDQELGARLAV
Sbjct  138  RLTDQSVEGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAV  197

Query  182  RHLRDLGHERIVHLAGNAATFDATARVQGWRDELSSSPDLPQELLQGDFTAASGYSLTSD  241
            RHLRDLGHERI HLAGN  TFDA+ARVQGWRDEL+ SP LPQ+LL+GDFTA SGY  + +
Sbjct  198  RHLRDLGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAME  257

Query  242  LARSPDGLPTAIFagndlmalgalaalaelglSVPDDVSLVGFDDIAGADHFIPALTTVR  301
            LARS+DGLPTAIFAGNDLMALG LAALAELGLS PDDVSLVGFDDIAGADHFIPALTT+R
Sbjct  258  LARSSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIR  317

Query  302  QDFETLGSTAMETLLSTMSGQEPVRRQIPPTLVVRKSTAAPR  343
            QDF TLGS+A+ETLLSTM+GQEPVRRQIPPTLVVRKSTAAPR
Sbjct  318  QDFMTLGSSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAPR  359

3) AAur_3708 in NC_008711


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  241 bits (901),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 153/334 (46%), Positives = 233/334 (70%), Gaps = 5/334 (1%)

Query  9    SRPPVMEDVARVAGVSHQTVSRVLNNHPNVSSKTRERVEQAITELGYRRNTAARSLVTRR  68
            +R+P M DVA+VAGVSH TVSRVLN HP+V + TR RVE AI++LGYRRNT AR+L ++R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  69   SQTIGVLGSEMAQYGPSHTLLGVQQAAREAGYFVSIAALREVTPETIKDAMAHFMDQGVD  128
            S TIGV+ +  + Y  ++ LLG++ +AR AGY +++A+ +  ++  + + + ++ DQ+V+
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  129  GIVVTVPHPGTFDVLKDITAQVPLVAV--GSIGDEHLTGATVDQRQGARLAVEHLLELGH  186
            G+ V  ++  + D L D+ A++P+  V  GS+++ +++   +DQ  GARLAV HL +LGH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  187  QRIGHLSGPADWIDAAARIEGWRDALTEAGIEGETLIEGDWSAECGYREGLKIA--ADRS  244
            +RI HL+G  + +DAAAR++GWRD L+ +    + L+EGD +AE GYR ++ +A  +D  
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  245  VTALFVANDQMALGVLRALNELGVRVPEDISVVGFDDQPESAYFIPPLTTVAQDFEELGR  304
             TA+F +ND MALGVL AL ELG+  P+D+S+VGFDD + +  FIP+LTT+ QDF  LG 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  305  RCIGLLLDRLESGSTGTPVTVAPRLVVRSTTAPA  338
              I  LL  + +G       ++P LVVR +TA++
Sbjct  326  SAIETLLSTM-AGQEPVRRQIPPTLVVRKSTAAP  358

4) lacI2 in NC_018531


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  241 bits (899),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 153/334 (46%), Positives = 233/334 (70%), Gaps = 5/334 (1%)

Query  15   SRPPVMEDVARVAGVSHQTVSRVLNNHPNVSSKTRERVEQAITELGYRRNTAARSLVTRR  74
            +R+P M DVA+VAGVSH TVSRVLN HP+V + TR RVE AI++LGYRRNT AR+L ++R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  75   SQTIGVLGSEMAQYGPSHTLLGVQQAAREAGYFVSIAALREVTPETIKDAMAHFMDQGVD  134
            S TIGV+ +  + Y  ++ LLG++ +AR AGY +++A+ +  ++  + + + ++ DQ+V+
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  135  GIVVTVPHPGTFDVLKDITAQVPLVAV--GSIGDEHLTGATVDQRQGARLAVEHLLELGH  192
            G+ V  ++  + D L D+ A++P+  V  GS+++ +++   +DQ  GARLAV HL +LGH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  193  QRIGHLSGPADWIDAAARIEGWRDALTEAGIEGETLIEGDWSAECGYREGLKIA--ADRS  250
            +RI HL+G  + +DAAAR++GWRD L+ +    + L+EGD +AE GYR ++ +A  +D  
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  251  VTALFVANDQMALGVLRALNELGVRVPEDISVVGFDDQPESAYFIPPLTTVAQDFEELGR  310
             TA+F +ND MALGVL AL ELG+  P+D+S+VGFDD + +  FIP+LTT+ QDF  LG 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  311  RCIGLLLDRLESGSTGTPVTVAPRLVVRSTTAPA  344
              I  LL  + +G       ++P LVVR +TA++
Sbjct  326  SAIETLLSTM-AGQEPVRRQIPPTLVVRKSTAAP  358

5) SCAB_63941 in NC_013929


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  231 bits (861),  Expect = 5e-62, Method: Compositional matrix adjust.
 Identities = 158/333 (48%), Positives = 229/333 (69%), Gaps = 7/333 (2%)

Query  7    RPPTMADVARQAGVSHQTVSRVLGDHPNVRDETRTRVQRAIEEMGYRRNSSARALVTRRT  66
            R+P M DVA+ AGVSH TVSRVL +HP+VR ETR+RV+ AI ++GYRRN+ ARAL ++R+
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  67   QTLGVVASNTTLYGPASTLFALEEAARAEGYLVSTVSLRELTMETLSEAVDRLSDGGVDG  126
             T+GVV + + LY  +  L+++E +ARA GY ++  S +  +   L+E V RL+D +V+G
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  127  VIALAPQRSAVAALAGL--RLPFPVVAVGTGSGSEVPSVNVDQELGARLATGHLLAAGHR  184
            V  +A+++ AV AL+++   +P +VV  G+ S + ++ V++DQELGARLA  HL   GH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  185  KVWHLAGPEDWQESADRTAGWRATLEEAGIEPPQPLRGDWSPLSGYRAGQELAGWVGRGL  244
            ++ HLAG  +  ++A R  GWR  L  +   P Q L GD ++ SGYR++ ELA + + GL
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELA-RSSDGL  265

Query  245  -TAVFVANDQMALGVLRALREAGVRTPQDVAVVGFDDIPESEFFAPPLTTVRQDFTTVGR  303
             TA+F +ND MALGVL AL E G+ +P+DV++VGFDDI+ ++ F P+LTT+RQDF T+G 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  304  RSIALLLDLIEGRPPAGPSRIAIEPQLVVRAST  336
             +I  LL  + G+ P    R  I P LVVR ST
Sbjct  326  SAIETLLSTMAGQEPV---RRQIPPTLVVRKST  355

6) Sros_6224 in NC_013595


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  227 bits (846),  Expect = 8e-61, Method: Compositional matrix adjust.
 Identities = 150/336 (45%), Positives = 241/336 (72%), Gaps = 6/336 (1%)

Query  8    RPPVMADVARVAGVSHQTVSRVLNDHPNVRAETRTRVLAAIDQLGYRRNFVARALVTRHS  67
            R+P M DVA+VAGVSH TVSRVLN+HP+VR+ETR+RV AAI QLGYRRN VARAL +++S
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  68   RRLGVVSFDTTLYGPASTVYSIEQAARTAGYFVSIVSLRTIDRAGVRDALDYLADQGVDG  127
              +GVV  ++ LY  +  + +IE +AR+AGY +++ S +    +++ + +  L+DQ+V+G
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  128  IVVVAPQRSAAQALDDLPAGIPVVAVEGGHAGD--ISVVSVDQVAGARMATEHLLDMGHD  185
            + V+A+++ A +AL D+ A+IP+  V +G  ++  IS V +DQ  GAR+A  HL D+GH+
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  186  TVWHVSGPSDWLEAEGRIAGWRDVLTAAGRPVPDPLDGDWSPRSGYVAGRRLAAMAGDV-  244
             + H++G  + ++A +R+ GWRD L+ +     + L+GD ++ SGY ++  LA  ++++ 
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  245  TAVFVANDQMALGVLRALAEEGVRVPEQMSVVGFDDIPESEFFSPPLTTVRQDFGAVGRC  304
            TA+F +ND MALGVL ALAE G+  P+++S+VGFDDI+ ++ F P+LTT+RQDF ++G  
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  305  SIEVLLRQIEADGPLARERLVVPPEFVARASASPSR  340
            +IE LL  + ++ P+ R+   +PP +V R S++++R
Sbjct  327  AIETLLSTMAGQEPVRRQ---IPPTLVVRKSTAAPR  359

7) Asphe3_03580 in NC_015145


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  225 bits (838),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 156/332 (47%), Positives = 233/332 (71%), Gaps = 7/332 (2%)

Query  2    PRLEDVADKAGVSHQTVSRVVNNHPNVSQATRAKVEAAIAELGYRRNTAARSLVTRRSQT  61
            P + DVA+ AGVSH TVSRV+N HP+V   TRA+VEAAIA+LGYRRNT AR+L ++RS T
Sbjct  29   PGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSST  88

Query  62   IGVLASELSQYGPANTLLGVEQAARDAGYFVSIAALREVGRDAIADAVNHFMDQAVDGIA  121
            IGV+ +  + Y  +  LLG+E +AR AGY +++A+ +  +   +A+ V ++ DQ+V+G+A
Sbjct  89   IGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVA  148

Query  122  VLVPHSDTLLALDEM--QLPVPVVAVGSTGNSGVSGAMVDQRRGARLAVEHLIGQGHRRI  179
            V+ ++  ++ AL ++  ++P++VV  GS +N+ +S   +DQ  GARLAV HL + GH RI
Sbjct  149  VIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERI  208

Query  180  GHIAGPQDWTDGAERAEGWREALK-DAGLPEDLLVQGDWSAGSGYRAGQKLA--AGGSAT  236
             H+AG  +  D+A R +GWR+ L   ++LP++LL +GD +A SGYR++  LA  ++G +T
Sbjct  209  THLAGNFETFDAAARVQGWRDELACSPSLPQQLL-EGDFTAESGYRGAMELARSSDGLPT  267

Query  237  ALFVANDQMALGVLRASAEAGVRVPDDVSVVGFDDQPESGYFTPPLTTVRQDFEELGRRC  296
            A+F +ND MALGVL A AE G+  PDDVS+VGFDD + ++ F P+LTT+RQDF  LG   
Sbjct  268  AIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSA  327

Query  297  MDIMLKEIEAGAPVSSTVVTPELVLRASTAPP  328
            ++ +L  + +  PV    + P LV+R STA+P
Sbjct  328  IETLLSTMAGQEPVRRQ-IPPTLVVRKSTAAP  358

8) Jden_0495 in NC_013174


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  221 bits (823),  Expect = 5e-59, Method: Compositional matrix adjust.
 Identities = 156/335 (47%), Positives = 242/335 (73%), Gaps = 6/335 (1%)

Query  5    RPPGMNDVARLAGVSHQTVSRVLNDHPSVRPETRDRVLQAVADLGYrrnlaaralvtrrt  64
            R+PGM DVA++AGVSH TVSRVLN+HPSVRPETR RV  A+A+LGYRRN  ARAL ++R+
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  65   atIGLITTGSSLFGPQRAFVAIEEAAREAGYIVAVATVRQPTPTSMNTLLDHLLSQNVEG  124
            +TIG++ +GS+L+   R +++IE +AR AGY + +A+ +  +++ +  ++ +L  Q+VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  125  IVIVAPHSQVLDAIRSFEPSIPVVVLADAAHVPGHIHTVSLDQVETGRLAVRHLASLGHE  184
            + ++A++   +DA+    + IP+ V+  ++    +I  V LDQ   +RLAVRHL  LGHE
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  185  QIAHISGPLDWTDARGRLEGW--QLECREVGVNPVPLIQSDWSSERGYDIGRDFVRA--G  240
            +I+H++G ++  DA +R++GW  +L C      P  L+++D ++E GY  + ++ R+  G
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSP--SLPQQLLEGDFTAESGYRGAMELARSSDG  264

Query  241  LPTAIFAANDMIALGVMRALYEAGVRVPEDVSIVGVDDVPGAAHFIAPLTTIHHPFARMG  300
            LPTAIFA+ND++ALGV+ AL E G+  P+DVS+VG DD++GA HFI++LTTI++ F  +G
Sbjct  265  LPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLG  324

Query  301  KVIMETLLAAIDGQDVTpqvlppqlvvRHSTASPR  335
               +ETLL+++ GQ+   + +PP LVVR STA+PR
Sbjct  325  SSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAPR  359

9) Achl_0371 in NC_011886


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  217 bits (807),  Expect = 9e-58, Method: Compositional matrix adjust.
 Identities = 155/335 (47%), Positives = 225/335 (68%), Gaps = 5/335 (1%)

Query  6    KGRMPRLEDVADVAGVSHQTVSRVINNHPNVSKATREKVEAAIAQLGYRRNTAARSLVTR  65
             GR P + DVA+VAGVSH TVSRV+N HP+V   TR +VEAAIAQLGYRRNT AR+L ++
Sbjct  25   MGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSK  84

Query  66   RSQTIGVLASELSQYGPANTLLGVEQAARDAGYFVSIAALREVNGAAIAGAVSHFLDQAV  125
            RS TIGV+ +  + Y  +  LLG+E +AR AGY +++A+ +   ++ +A  V ++ DQ+V
Sbjct  85   RSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSV  144

Query  126  DGIAVLVPHAETLQALDAL--KIPVPVMAVGSLGNSEVSGAMVDQRAGARLAVEHLIAQG  183
            +G+AV+ ++  +++AL  +   IP++V+  GS++N+ +S   +DQ  GARLAV HL   G
Sbjct  145  EGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLG  204

Query  184  HRRIGHVSGPAGWTDAAERAEGWREalhaagladdllVEGDWSAGSGYAIGRGLAAGRS-  242
            H RI H++G     DAA R +GWR+ L  +    + L+EGD +A SGY  +  LA +   
Sbjct  205  HERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDG  264

Query  243  -ATALFVGNDQMALGILRAFAEAGVRVPDDVSVVGFDDQPESGYFSPPLTTVRQDFEELG  301
             +TA+F GND MALG+L A+AE G+  PDDVS+VGFDD + ++ F P+LTT+RQDF  LG
Sbjct  265  LPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLG  324

Query  302  RRCLDTMLKEIEAGTGVSSTVVTPELVPRSSTAPP  336
               ++T+L  + +   V    + P LV R STA+P
Sbjct  325  SSAIETLLSTMAGQEPVRRQ-IPPTLVVRKSTAAP  358

10) AAur_0534 in NC_008711


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  215 bits (801),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 142/329 (44%), Positives = 226/329 (69%), Gaps = 5/329 (1%)

Query  1    MGDVAKMAGVSHQTVSRVLNNHPNVSHQTKQRVESAIEVLGYRRNTAARSLVTRRSRTIG  60
            M DVA++AGVSH TVSRVLN HP+V  +T+ RVE+AI  LGYRRNT AR+L ++RS TIG
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  61   VLACETGQFGPANTLLGVEQAGREAGYFVSIANLREVTDHSVNDAMAHFRNQSVDGIVIL  120
            V+   +G +  +  LLG+E ++R AGY +++A+ +  +   + + + ++ +QSV+G+ ++
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  121  VPHPDVLAVLRDV--SFPVPIVAVGAGAGNQLTGASLNQRMGARLAVDHLIGLGHRRIAH  178
             ++   +  L DV   +P+++V  G+ +  +++   L+Q +GARLAV HL +LGH RI+H
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITH  210

Query  179  ISGPPHWIDAAERIKGWQESLETTGLSADVLLRGGWDAASGYRAGLELIQRHT--VTAVF  236
            ++G  + +DAA R++GW++ L  +   ++ LL G+  A SGYR+++EL +      TA+F
Sbjct  211  LAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAIF  270

Query  237  VANDQMAVGVLRAVQEAGLHVPDDISVVGYDDQPEAEFFMPPLTTIKQDFEELGRRCMEA  296
             +ND MA+GVL A+ E GL  PDD+S+VG+DD + A+ F+P+LTTI+QDF  LG   +E+
Sbjct  271  AGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIET  330

Query  297  VlqqlggdggtgdqIVNPRLVIRATTAAP  325
            +L  ++G+     QI  P LV+R +TAAP
Sbjct  331  LLSTMAGQEPVRRQI-PPTLVVRKSTAAP  358

11) lacI1 in NC_018531


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  215 bits (799),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 142/329 (44%), Positives = 226/329 (69%), Gaps = 5/329 (1%)

Query  1    MGDVAKMAGVSHQTVSRVLNNHPNVSHQTKQRVESAIEVLGYRRNTAARSLVTRRSRTIG  60
            M DVA++AGVSH TVSRVLN HP+V  +T+ RVE+AI  LGYRRNT AR+L ++RS TIG
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  61   VLACETGQFGPANTLLGVEQAGREAGYFVSIANLREVTDHSVNDAMAHFRNQSVDGIVIL  120
            V+   +G +  +  LLG+E ++R AGY +++A+ +  +   + + + ++ +QSV+G+ ++
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  121  VPHPDVLAVLRDV--SFPVPIVAVGAGAGNQLTGASLNQRMGARLAVDHLIGLGHRRIAH  178
             ++   +  L DV   +P+++V  G+ +  +++   L+Q +GARLAV HL +LGH RI+H
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITH  210

Query  179  ISGPPHWIDAAERIKGWQESLKTAGLSADVLLRGGWDAASGYRAGLELIQRHT--VTAVF  236
            ++G  + +DAA R++GW++ L  +   ++ LL G+  A SGYR+++EL +      TA+F
Sbjct  211  LAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAIF  270

Query  237  VANDQMAVGVLRAVQEAGLHVPDDISVVGYDDQPEAEFFMPPLTTIKQDFEELGRRCMEA  296
             +ND MA+GVL A+ E GL  PDD+S+VG+DD + A+ F+P+LTTI+QDF  LG   +E+
Sbjct  271  AGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIET  330

Query  297  VlqqlggdggtgdqIVNPRLVIRATTAAP  325
            +L  ++G+     QI  P LV+R +TAAP
Sbjct  331  LLSTMAGQEPVRRQI-PPTLVVRKSTAAP  358

12) Sked_06900 in NC_013521


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  213 bits (794),  Expect = 9e-57, Method: Compositional matrix adjust.
 Identities = 151/337 (45%), Positives = 227/337 (68%), Gaps = 2/337 (0%)

Query  1    MRVSPRRPGMNDVARAAGVSHQTVSRVLNDHPNVREETREKVLAAISELGYRRNSAARTL  60
            ++V  R PGM DVA+ AGVSH TVSRVLN+HP+VR ETR +V AAI++LGYRRN+ AR+L
Sbjct  22   VQVMGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARAL  81

Query  61   VTQRSGTVGVVTTGSFSFGPSQTLVAIEEAAREAGYFLTVATLRTVDAQSMRQALGHLMD  120
             ++RS+T+GVV +GS  +  ++ L++IE +AR AGY + +A+ +   A  + + + +L D
Sbjct  82   KSKRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTD  141

Query  121  QGVDGIVVIAPHAEVVDAVRASHEQlpvvvvaaladppESVTTVSVDQALGARTVVDHLA  180
            Q+V+G+ VIA++   VDA+     ++P+ VV + + +   ++ V +DQ LGAR  V HL 
Sbjct  142  QSVEGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLR  201

Query  181  ALGHAEVVHVSGPPGWLDAEARVHGWREQSRALGLTVPAVVEGDWTSACGYAVGRRMV--  238
             LGH  + H++G    +DA ARV+GWR++          ++EGD T+  GY  +  +   
Sbjct  202  DLGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARS  261

Query  239  AEGAPTAVFAANDHLALGLLRAFHEGGLSVPRDVSVVGFDDVTGAGDFIPPLTTVRPGFA  298
            ++G PTA+FA+ND +ALG+L A+ E GLS P DVS+VGFDD++GA++FIP+LTT+R +F 
Sbjct  262  SDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFM  321

Query  299  DLGHQIIATLRGLLDGAQVDDAVLEPELVVRESTGRP  335
             LG   I TL + + G +     + P LVVR ST+ P
Sbjct  322  TLGSSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAP  358

13) Celgi_2588 in NC_015671


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  212 bits (789),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 146/342 (43%), Positives = 237/342 (70%), Gaps = 12/342 (3%)

Query  3    IDTSARPPAMSDVALAAGVSHQTVSRVLNGHPSVRPETRERVQEAIARLGYRRNSAARTL  62
            ++  +R+P+M DVA  AGVSH TVSRVLNGHPSVRPETR RV+ AIA+LGYRRN+ AR+L
Sbjct  22   VQVMGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARAL  81

Query  63   VTRRTDTLGVVTPASALYGPTSTLVAFEEAAREAGWYVSVATMRRFTAESMRTTVEHFLD  122
             ++R+ T+GVV ++S+LY     L+++E +AR AG  +++A+ +  +A  +   V ++ D
Sbjct  82   KSKRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTD  141

Query  123  QGVDALVVIAPTREVGEAVAGLEVTVPV-VLISSTLDIPASSGVRTVGVDQRLGARLATR  181
            Q+V+++ VIA+ +   +A++++   +P+ V++S+++  P    +  V +DQ LGARLA R
Sbjct  142  QSVEGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPR---ISFVELDQELGARLAVR  198

Query  182  HLLARGHSSVLHVAGPLDWYDAQDRLAGWREE--CAAAGVRVQEPVTAGWTADSGYEVGR  239
            HL   GH  + H+AG ++ +DA  R+ GWR+E  C+++    Q+ + ++ TA+SGY  + 
Sbjct  199  HLRDLGHERITHLAGNFETFDAAARVQGWRDELACSPS--LPQQLLEGDFTAESGYRGAM  256

Query  240  SLV--ATGLPEAIFAANDQLALGLEHAFWEAGVQVGQDVALVGFDDEVGSAHYLPPLTTV  297
             L   + GLP AIFA+ND +ALG+  A+ E G+   +DV+LVGFDD  G+ H++P+LTT+
Sbjct  257  ELARSSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTI  316

Query  298  RQDFVRLGGLAVDVVRqaiaggaqpgapRLVPPEIVVRRSSG  339
            RQDF+ LG+ A++ +    + ++Q    R +PP +VVR+S++
Sbjct  317  RQDFMTLGSSAIETL--LSTMAGQEPVRRQIPPTLVVRKSTA  356

14) ACPL_5121 in NC_017803


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  211 bits (786),  Expect = 4e-56, Method: Compositional matrix adjust.
 Identities = 154/337 (46%), Positives = 225/337 (67%), Gaps = 10/337 (2%)

Query  6    SRSPAMTDVARLAGVSHQTVSRVLNDHPNVKEQTRLRVRAAIAELGYRPNRAARALVTGR  65
            +R+P+M DVA++AGVSH TVSRVLN+HP+V+ +TR RV AAIA+LGYR N  ARAL + R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  66   SQLIGVVARNSMLYGPASMLTEFEQAAADAGFAVSVGSVRELDRDSIAAVVDRHLDQRVA  125
            S  IGVV   S LY  + +L  +E +A  AG+ ++++S +      +A +V R  DQ V 
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  126  GLVVIAQVASATEALAEIPADVPV-VCIDGDPAAGR-SLVTVDQVAGARAAVRHLLEAGH  183
            G+ VIA    A +AL+++ AD+P+ V + G  +  R S+V +DQ  GAR AVRHL + GH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  184  ETVWHVSGPTDWFDSAGRIQGWRQTLQEAGREVPPLLSADWSAAEGYRAGQMLARMPEV-  242
            E + H++G  + FD+A+R+QGWR+ L  +      LL +D +A  GYR++  LAR ++  
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  243  -TAIFTANDHLALGVLRALHERGRRVPHDVSLIGFDDVPEAAYFIPPLTTVRQSFGDVAR  301
             TAIF++ND +ALGVL AL E G   P+DVSL+GFDD++ A  FIP+LTT+RQ F  ++ 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  302  AALTLLLGQL--RDAPRPADTVIVPARLVVRESVAPP  336
            +A+  LL+ +  +++ R      +P+ LVVR S A+P
Sbjct  326  SAIETLLSTMAGQEPVRRQ----IPPTLVVRKSTAAP  358

15) PACID_21090 in NC_019395


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  211 bits (785),  Expect = 5e-56, Method: Compositional matrix adjust.
 Identities = 153/315 (49%), Positives = 218/315 (70%), Gaps = 2/315 (0%)

Query  5    SRPPGMMDVARLAGVSHQTVSRVLNNADSVRPATREKVRRAIAELGYRRNLSARALVTNR  64
            +R+PGM+DVA++AGVSH TVSRVLN   SVRP TR +V  AIA+LGYRRN  ARAL ++R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  65   TRVIGVVVARGGYYGPGSTSSAIQTAARGRGYATIVASLRDGSPGELAAVVDMLTDHGVE  124
            +  IGVV+A +G Y       +I+T+AR+ GY   +AS ++G++++LA +V  LTD++VE
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  125  GITAIAPQLGFVEGLRKVARSVPIVVVADGFEVSEGMHPVSVDQRHGARLATQHLIGLGH  184
            G++ IA++   V++L  V   +P+ VV  G   +  +  V +DQ  GARLA +HL +LGH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  185  RRIAHISGPDDWFDSRERVIGWREALQDAGLEVPEVMVGDWSAESGY--AMGGRLLEEGL  242
             RI+H++G  + FD+  RV GWR+ L  +     +++ GD +AESGY  AM      +GL
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  243  PDAVFSSNDTMalgllacladlgIRVPDDISLVGYDDANGAAFFQPPLTTIRQPFEELGA  302
            P A+F++ND MALG+LA LA+LG+  PDD+SLVG+DD  GA  F P+LTTIRQ F  LG+
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  303  RCVEVLLEAIEGHEP  317
              +E LL ++ G+EP
Sbjct  326  SAIETLLSTMAGQEP  340

16) lacI in NC_009142


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  210 bits (782),  Expect = 9e-56, Method: Compositional matrix adjust.
 Identities = 146/333 (44%), Positives = 218/333 (66%), Gaps = 7/333 (2%)

Query  17   GRPPSLADVAALAGVSHMTVSRVVNGAGPVRADTRRRVLDAIDHLGYRPNSLARGLATGR  76
            GR+P++ DVA +AGVSH+TVSRV+NG  +VR++TR RV  AI +LGYR N++AR+L + R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  77   SRTLGVVALDSVLYGPASTLFGVENAAREAGYGVSVAS-VSAPERSLIVDAVDSLRRQGV  135
            S T+GVV  +S LY  +  L+G+E +AR AGY +++AS  +++   L  + V  L  Q+V
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDL-AEMVRRLTDQSV  144

Query  136  EGAVVIAPHVAAGRALETAPRDVPLVAV--ADTDEAPVPVVAVDQRDGARRATEHLLALG  193
            EG  VIA++  A  AL     D+P+  V  +   ++ ++ V +DQ  GAR A  HL  LG
Sbjct  145  EGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLG  204

Query  194  HETVWHIAGPHGWLETQVREEGWRAVLSGRGAAEPPVLRGDWSPRSGYEIGKELI-GRDG  252
            HE + H+AG    +++  R +GWR  L+   +    +L GD ++ SGY  + EL  + DG
Sbjct  205  HERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDG  264

Query  253  -ADAVFVANDQMALGLLRALSEAGRRVPDDVRVAGFDDVPEAAYFSPPLTTVRQDFLSLG  311
             + A+F +ND MALG+L AL+E G   PDDV + GFDD++ A  F P+LTT+RQDF++LG
Sbjct  265  LPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLG  324

Query  312  RKTFERLLGRIEGRETPARSVVPAELIVRESTG  344
              ++E LL+ + G+E P R  +P+ L+VR ST+
Sbjct  325  SSAIETLLSTMAGQE-PVRRQIPPTLVVRKSTA  356

17) PALO_00360 in NC_021064


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  208 bits (775),  Expect = 3e-55, Method: Compositional matrix adjust.
 Identities = 152/315 (49%), Positives = 216/315 (69%), Gaps = 2/315 (0%)

Query  5    SRPPGMMDVARLAGVSHQTVSRVLNNADSVRPATREKVRRAIDELGYRRNLSARALVTNR  64
            +R+PGM+DVA++AGVSH TVSRVLN   SVRP TR +V  AI +LGYRRN  ARAL ++R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  65   TRVIGVVVARGGYYGPGSTSSAIQTAARGRGYATIVASLRDGSPGELAAVVGMLTDHGVE  124
            +  IGVV+A +G Y       +I+T+AR+ GY   +AS ++G++++LA +V  LTD++VE
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  125  GITAIAPQLGFVEGLRKVARSVPIVVVADGFEVSQGMHAVSVDQRHGARLATQHLIGLGH  184
            G++ IA++   V++L  V   +P+ VV  G   +  +  V +DQ  GARLA +HL +LGH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  185  RQIAHISGPDDWFDARERVIGWREALEDAGLEVPEVMVGDWSAESGY--AMGGRLLDEGL  242
             +I+H++G  + FDA  RV GWR+ L  +     +++ GD +AESGY  AM      +GL
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  243  PDAVFCSNDTMalgllacladlgIRVPDDISLVGYDDANGAAFFQPPLTTIRQPFEELGA  302
            P A+F +ND MALG+LA LA+LG+  PDD+SLVG+DD  GA  F P+LTTIRQ F  LG+
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  303  RCVEVLLEAIEGHEP  317
              +E LL ++ G+EP
Sbjct  326  SAIETLLSTMAGQEP  340

18) Arth_0219 in NC_008541


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  208 bits (775),  Expect = 4e-55, Method: Compositional matrix adjust.
 Identities = 154/334 (47%), Positives = 226/334 (68%), Gaps = 7/334 (2%)

Query  18   RLPRLEDVAERAGVSHQTVSRVINNHPNVSKATRERVEAAIAELGYRRNTAARSLVTRRS  77
            R P + DVA+ AGVSH TVSRV+N HP+V   TR RVEAAIA+LGYRRNT AR+L ++RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  78   HTIGVLASELSQYGPANTLLGVEQAARDAGYFVSIAAIREVGAESIADAARHFMDQGVDG  137
             TIGV+ +  + Y  +  LLG+E +AR AGY +++A+ +  +A  +A+  R++ DQ+V+G
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  138  IVALVPHAGTLQALEQLNLDvpvvvvgssgagrfsgAMV--DQKMGARLAVEHLIERGHK  195
            +  + ++  +++AL ++  D+P+ VV S++ +    + V  DQ +GARLAV HL + GH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  196  RIGHISGPRDWIDAAERAEGWREALA-AEGLPADLLVEGDWSAGSGYGIGQKLAVERN--  252
            RI H++G  + +DAA R +GWR+ LA + +LP +LL EGD +A SGY  +  LA   +  
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLL-EGDFTAESGYRGAMELARSSDGL  265

Query  253  ATAVFVGNDQMALGVLRAFSEAGVRVPRDVSVVGFDDQPEAGYFTPPLTTVRQDFEELGR  312
            +TA+F GND MALGVL A++E G+  P DVS+VGFDD + A+ F P+LTT+RQDF  LG 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  313  RCVDLMLRLLEDGAAAGTTVVEPRIVVRASTARP  346
              ++ +L  +  G  +    + P +VVR STA P
Sbjct  326  SAIETLLSTM-AGQEPVRRQIPPTLVVRKSTAAP  358

19) lacI1 in NC_010162


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  208 bits (774),  Expect = 4e-55, Method: Compositional matrix adjust.
 Identities = 148/333 (45%), Positives = 227/333 (69%), Gaps = 6/333 (1%)

Query  33   RAAVMVDVAKLAGVSYQTVSRVLHDSPHVHRDTRERVLDAIRQLDYRPSSVAQALVTGRS  92
            RA+ MVDVA++AGVS  TVSRVL++ P V+ +TR RV  AI QL+YR ++VA+AL + RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  93   RTLGVVSFDTTHYGPASTLHGLETAAHDAGYGVSVVSLKSLSRAPVVDAVKGLCDQGADG  152
             T+GVV  ++  Y  +  L G+ET+A+ AGY +++ S ++ + + + + V+ L DQ+ +G
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  153  IMVIAPLRSAVDALRHVSSDVPVVAVEGG--PDDSVPVVAVDQHGGATAATRHLLDLGHR  210
            + VIA+ + AVDAL +V +D+P+  V +G  ++  ++ V +DQ+ GA  A RHL DLGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  211  AVWHIAGSTDSLEAEQRIDGWRSTLEAAGVEPPPLLRGDWSARSGYELAPQLARTPGA--  268
             + H+AG+ ++++A  R++GWR  L  +   P  LL GD +A SGY  A +LAR++++  
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  269  TAVFVANDQMALGVLRYLHEIGRAVPRDISIVGFDDIPEAAYFTPPLTTVRQDFAELGRR  328
            TA+F +ND MALGVL  L E+G + P D+S+VGFDDI+ A  F P+LTT+RQDF  LG  
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  329  CLHVLLGQIESGRRSCSRVVVEAELVLRKSTAA  361
             ++ LL+ + +  +   R  + + LV+RKSTAA
Sbjct  327  AIETLLSTMAG--QEPVRRQIPPTLVVRKSTAA  357

20) Asphe3_10670 in NC_015145


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  208 bits (774),  Expect = 4e-55, Method: Compositional matrix adjust.
 Identities = 144/332 (44%), Positives = 214/332 (65%), Gaps = 5/332 (1%)

Query  18   RKPTINDVAQVAGVSFGTVSRVLNDAPDVSAATRQRVLQVIKDIGYRRNRAATALVTSRS  77
            R P + DVAQVAGVS  TVSRVLN+ P V + TR RV   I ++GYRRN  A AL + RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  78   TSIGILSDGSPRFGPMGTLMALENVARKKGYATTVISVEKPDEESVQAALDTLDDTGVGG  137
            ++IG++  GS  +     L+++E  AR  GY   + S +      +   +  L D +V G
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  138  IIVIAPLVEMAAAVWNASFRVPVEMIAAGASSTPNVFTYSE-NQELGSRLATQHLIDLGH  196
            + VIA+      A+ +    +P+ ++ +G+ S P + ++ E +QELG+RLA +HL DLGH
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRI-SFVELDQELGARLAVRHLRDLGH  205

Query  197  TDIAHLAGSMDWFDGRVRKRGWEATLR-DAGLKPGLCLEGDWSPRWAYETGLRLVRENR-  254
              I+HLAG+ + FD+  R +GW   L   ++L   L LEGD ++  +Y  ++ L R +  
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQL-LEGDFTAESGYRGAMELARSSDG  264

Query  255  VPQAIFAASDHTALGVIRAFAENGVRVPDDVSIVGFDDIEGSDYFLPPLTTVRQDFNALA  314
            +P AIFA++D  ALGV+ A+AE G+  PDDVS+VGFDDI G+D F+P+LTT+RQDF +L+
Sbjct  265  LPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLG  324

Query  315  LMSMEVLLGAMEGRDVDRTPIPPTLVVRNSAT  346
              ++E LL++M G++  R  IPPTLVVR+S++
Sbjct  325  SSAIETLLSTMAGQEPVRRQIPPTLVVRKSTA  356

21) SCE1572_11980 in NC_021658


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  205 bits (761),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 146/330 (45%), Positives = 222/330 (68%), Gaps = 6/330 (1%)

Query  1    MVDVAKLAGVSHQTVSRVLHDSPHVHRETRERVLEAIRQLDYRPSSVAQALVTGRSRTLG  60
            MVDVA++AGVSH TVSRVL++ P V+ ETR RV  AI QL+YR ++VA+AL + RS T+G
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  61   VVSFDTTLYGPASTLLGLEEAAHDAGYGVSIASVKSLSRASVVDAVKRLCDQGADGVVVI  120
            VV  ++ LY  +  LLG+E +A+ AGY +++AS ++ + + + + V+RL DQ+ +GV VI
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  121  APQRSAVDALRHITSDVPVVAVEGG--PDDSIPVVAVDQHGGAAAATRHLLDLGHKTVWH  178
            A+++ AVDAL ++ +D+P+  V +G  ++  I+ V +DQ+ GA  A RHL DLGH  + H
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITH  210

Query  179  VAGPPDWLEAEQRIDGWRSTLVAAGVERPPLLRGDWSARSGYELGPQLVRTPG--ITAVF  236
            +AG  + ++A  R++GWR  L  +      LL GD +A SGY  + +L R+++   TA+F
Sbjct  211  LAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAIF  270

Query  237  VANDQMALGLLRFVHEAGRDVPKDISIVGFDDIPEAAYFTPPLTTVNQDFSALGRRCLHL  296
             +ND MALG+L  + E G   P D+S+VGFDDI+ A  F P+LTT+ QDF +LG   ++ 
Sbjct  271  AGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIET  330

Query  297  LLGQIESGHRSYAHVVVETKLVVRKSTAAA  326
            LL+ + + +    +  +   LVVRKSTAA+
Sbjct  331  LLSTMAGQEPVRRQ--IPPTLVVRKSTAAP  358

22) Arth_1918 in NC_008541


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  205 bits (762),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 140/336 (42%), Positives = 215/336 (64%), Gaps = 5/336 (1%)

Query  21   RKPTINDVAQIAGVSFGTVSRVLNNAPDVSASTRERVLQIVKDIGYRRNRAATALVTSRS  80
            R P + DVAQ+AGVS  TVSRVLN  P V + TR RV   + ++GYRRN  A AL + RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  81   TSIGILSDGSPRFGPVGTLMALENIARKKGYATTVISVEKPYEESVQAALDTLDDTGVGG  140
            ++IG++  GS  +     L+++E  AR  GY   + S +      +   +  L D +V G
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  141  IIVIAPLVDMAAAVWNASCRVPVEMIAAGASSTPNVFTYSE-NQELGARLATQHLIDLGH  199
            + VIA+      A+ +    +P+ ++ +G+ S P + ++ E +QELGARLA +HL DLGH
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRI-SFVELDQELGARLAVRHLRDLGH  205

Query  200  TDIAHFAGSMDWFDGRVRKRGWEAALR-DAGLAPGLCIEGDWSPKWAYETGLQLVREGR-  257
              I+H+AG+ + FD+  R +GW   L   ++L+  L +EGD ++  +Y  +++L R +  
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQL-LEGDFTAESGYRGAMELARSSDG  264

Query  258  IPQAIFAASDHTALGLIRAFAENGVRVPDDVSVVGFDDIEGSDFFLPPLTTVRQDFTALA  317
            +P AIFA++D  ALG++ A+AE G+  PDDVS+VGFDDI G+D F+P+LTT+RQDF +L+
Sbjct  265  LPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLG  324

Query  318  LMSTEVLLGAMEGRDVDRTPITPTLVVRNSSTRATP  353
              + E LL++M G++  R  I PTLVVR+S++ + P
Sbjct  325  SSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAPRP  360

23) lacI2 in NC_010162


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  205 bits (762),  Expect = 5e-54, Method: Compositional matrix adjust.
 Identities = 145/328 (45%), Positives = 220/328 (68%), Gaps = 6/328 (1%)

Query  112  KLAGVSYQTVSRVLHDSPHVRRDTRERVLDAIRQLDYRPSSVAQALVTGRSRTLGVVSFD  171
            ++AGVS  TVSRVL++ P VR +TR RV  AI QL+YR ++VA+AL + RS T+GVV  +
Sbjct  36   QVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIGVVMAG  95

Query  172  TTLYGPASTLLGLEEAAHDAGYGVSIASLKSFSRAPVLEAVQRLRDQGADGVVVIAPQRS  231
            + LY  +  LLG+E +A+ AGY +++AS ++ + + + E V+RL DQ+ +GV VIA+++ 
Sbjct  96   SGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVIAARQV  155

Query  232  AVDALRHVTSDVPVVAVEGG--PDDSVPVVAVDQLGGAVSATRHLLDLGHKTVWHIAGPT  289
            AVDAL +V +D+P+  V +G  ++  ++ V +DQ  GA  A RHL DLGH  + H+AG  
Sbjct  156  AVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITHLAGNF  215

Query  290  DWLEADQRIDGWRSALQAAGAEIPPLLRGDWSARSGYELAPQLTRTPGV--TAVFVANDQ  347
            + ++A  R++GWR  L  + +    LL GD +A SGY  A +L+R+++   TA+F +ND 
Sbjct  216  ETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAIFAGNDL  275

Query  348  MALGLLRFLHESGRETPRDISVVGFDDIPEAAYFTPPLTTVRQDFSELGRRCLHVLLGQI  407
            MALG+L  L E G  +P D+S+VGFDDI+ A  F P+LTT+RQDF  LG   ++ LL+ +
Sbjct  276  MALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIETLLSTM  335

Query  408  ESGQRSWSRVVVETELVVRKSTAVPRRR  435
             + +  + +  +   LVVRKSTA PR +
Sbjct  336  AGQEPVRRQ--IPPTLVVRKSTAAPRPH  361

24) Kfla_2927 in NC_013729


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  204 bits (757),  Expect = 9e-54, Method: Compositional matrix adjust.
 Identities = 140/328 (43%), Positives = 218/328 (67%), Gaps = 6/328 (1%)

Query  6    RSLGMSDVAAHAGVSHQTVSRVINGHPNVAAATRKKVLEAIAELGYRPNSAARALVTGSS  65
            R+ GM DVA  AGVSH TVSRV+NGHP+V + TR +V  AIA+LGYR N+ ARAL +  S
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  66   RTIGLAIANISQYGPAQTMLGLERAAREAGYFLTVSVLDDDTAGDMIEAVERLATQSVDA  125
             TIG+ +A  + Y  ++ +LG+E +AR AGY + ++  ++++A+D+ E V RL+ QSV++
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  126  IVALSTYEGAVRALPDLSPRVPMIAVQAEDGGQDSAVWV--DQEAGAALATRHLLELGHR  183
            +  +++ + AV AL+D+ + +PM  V +   ++     V  DQE GA LA RHL +LGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  184  TVHHLRGPANALEADARERRWRGELEAAGAVVPPVLPGDWWPPTGYLAGRELVARRRGGE  243
             + HL G  ++++A AR + WR+EL  + ++   +L GD  + +GY ++ EL    R+++
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELA---RSSD  263

Query  244  EI-TAVFAANDQMALGLLRAFAEGGIRVPDDISVVGFDDVPEAAYYAPPLTTVRQDFAEL  302
             + TA+FA+ND MALG+L A+AE G+  PDD+S+VGFDD++ A  + P+LTT+RQDF  L
Sbjct  264  GLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTL  323

Query  303  GRRVIQVALARIGGTSIKPEPVQPHLLV  330
            G   I+  L+ ++G       + P L+V
Sbjct  324  GSSAIETLLSTMAGQEPVRRQIPPTLVV  351

25) SACTE_6513 in NC_015953


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  202 bits (752),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 147/334 (45%), Positives = 222/334 (67%), Gaps = 8/334 (2%)

Query  12   KPPGMTDVAQAAGVSPQTVSRVLSGHANVRAETRARVLAAVDRLGYRKNSAAQILSSGRS  71
            ++PGM DVAQ AGVS  TVSRVL+GH++VR+ETRARV AA+ +LGYR+N+ A+ L S RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  72   RTIGVVNLQTAFYSRLNLTFGIENAARAAGYSVSIASTASLDTSAVEAALSRLADQSVDG  131
             TIGVV   +++Y    + +GIE +ARAAGY +++AS  +  +S +   + RL+DQSV+G
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  132  I-ILAIPLIHVSPRIEQLTGSLP-TVTVDGS-RTPASEVVAIDQSQAARLATRHLLDLGH  188
            + ++A   + V + + ++ + +P +V + GS   P    V +DQ  +ARLA RHL DLGH
Sbjct  147  VAVIAARQVAVDA-LSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  189  ETVWHVSGPGEWLDAVNRIDGWRETLEAQGRTVPPILKGDWSPSSGYRNGLILGRIPE--  246
            E + H++G  E +DA  R++GWR+ L         +L GD ++ SGYR ++ L+R ++  
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  247  VTAVFAASDEMAFGVIRALHELGRRVPQDISVIGVDDIALAEYCSPSLTTVAQPFEEMGA  306
             TA+FA++D MA+GV+ AL ELG   P+D+S++G DDIA A+   P+LTT+ Q F  +G+
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  307  LAVSHLLRHINDPGAAREPASVEPKLVVRASTAP  340
             A+  LL  + +  + R    + P LVVR STA+
Sbjct  326  SAIETLLSTMAGQEPVRRQ--IPPTLVVRKSTAA  357

26) Snas_2892 in NC_013947


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  202 bits (751),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 146/334 (44%), Positives = 221/334 (67%), Gaps = 5/334 (1%)

Query  10   RPAVMTDVARLAGVSHQTVSRVLHDSSQVRPETRERVLRAIEELDYRPNAMARGLVSRRS  69
            R++ M DVA++AGVSH TVSRVL++ + VRPETR RV  AI +L+YR N++AR+L S+RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  70   TMIGVITFDTILFGPASTLLGIERAARAKGYGVSIATLEKLDRSSVVEAANTLANQGVSG  129
            + IGV+  ++ L+  +  LLGIE +ARA GY +++A+ +    S + E    L++Q+V G
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  130  IVIIAPQTAVSSALHSMPRNLTAVAVECGPDSG--LPAVSVDQVGGAAQATAHLLELGHK  187
            + +IA++     AL  +  ++    V  G+ S   ++ V +DQ  GA  A  HL +LGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  188  TVWHVSGPGDWLEARDRIEGWRSILERHGAVEPPVITGDWSARSGYAAGAMLAAQPDV--  245
             + H++G  + ++A  R++GWR  L    ++   ++ GD +A SGY ++  LA  +D   
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  246  TAVFAANDQMALGMLRAFYEKGLRVPDDVSVVGFDDIPEAPFLSPPLTTIRQDFDEMGRT  305
            TA+FA+ND MALG+L A+ E GL  PDDVS+VGFDDI+ A  + P+LTTIRQDF  +G +
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  306  AIATLLAILDGDSDPRPEPIASTLVVRESTGAPK  339
            AI TLL+ + G+   R + I++TLVVR ST+AP+
Sbjct  327  AIETLLSTMAGQEPVRRQ-IPPTLVVRKSTAAPR  359

27) Amir_1860 in NC_013093


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  201 bits (746),  Expect = 6e-53, Method: Compositional matrix adjust.
 Identities = 149/337 (45%), Positives = 222/337 (66%), Gaps = 10/337 (2%)

Query  7    RDPAMTDVAKLAGVSHQTVSRVLNGHPNVREQTRLRVRAAIAELGYRPNRAARALVTGRS  66
            R P+M DVA++AGVSH TVSRVLNGHP+VR +TR RV AAIA+LGYR N  ARAL + RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  67   QVIGVVAQNSTLYGPawllaaveqaaaqagfavSVGLV--KSLDRASISEAIERHRDQRV  124
              IGVV   S LY        +   ++  + +  + L   ++   + ++E + R  DQ V
Sbjct  87   STIGVVMAGSGLYE--LPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSV  144

Query  125  AGIVVIAPTDSASAALADVPDGVPLVAVDGDPARAS--ALVTVDQEAGALAAVRHLLDHG  182
             G+ VIA+ + A  AL+DV  ++P+  V +++   +  ++V +DQE GA  AVRHL D G
Sbjct  145  EGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLG  204

Query  183  HQTVWHVSGPPDWYDSEGRVRGWRRaleeagaevppvvaaDWSAASGYRAGLMLARMPEV  242
            H+ + H++G  + +D+ +RV+GWR  L  + +    ++ +D +A SGYR+++ LAR ++ 
Sbjct  205  HERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDG  264

Query  243  --TAIFAANDHLALGILRAMSERGRRVPDDVSLVGFDDVPEAAFFIPPLTTVRPDFDAVA  300
              TAIFA+ND +ALG+L A++E G   PDDVSLVGFDD++ A  FIP+LTT+R DF +++
Sbjct  265  LPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLG  324

Query  301  RETLGLLLAQVAGTELGEPRRTVAPSLVVRDSVAPPR  337
              ++  LL+ +AG E    RR ++P+LVVR S A+PR
Sbjct  325  SSAIETLLSTMAGQE--PVRRQIPPTLVVRKSTAAPR  359

28) Acel_0870 in NC_008578


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  199 bits (741),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 145/331 (44%), Positives = 213/331 (65%), Gaps = 3/331 (0%)

Query  1    MADVARLAGVSHMTVSRVLNNHTAVREETRRRVLAAIKELGYQPNTAARALATRRSGVIG  60
            M DVA++AGVSH+TVSRVLN H +VR ETR RV AAI +LGY+ NT ARAL ++RS+ IG
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  61   VLTIDTTLYGPAGTLYAVENAARRAGFSLTITSIKTVDPRSAAEGLDRLTSQAVEGIVVI  120
            V+  ++ LY  +  L ++E +AR AG+ + ++S +   +   AE + RLT Q+VEG+ VI
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  121  APSSQIGQALSPLHHRVPM--VTAGDALAGDVPAVYVDQAGGARLATNHLLEHGAERIWH  178
            A+     +ALS +   +PM  V +G      ++ V +DQ  GARLA  HL + G ERI H
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITH  210

Query  179  IAGPRSWLHAQARARGWRSALKAAGLQSPGVLYGDWTPASGYRAGLLLVEKIQEV-DAVF  237
            +AG    ++A AR +GWR  L  +   +  +L GD T+ SGYR+++ L    + +  A+F
Sbjct  211  LAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAIF  270

Query  238  VANDQMALGVLRAFHEHGIRVPRDVLLVGFDDIPEAAYFAPPLTTIRQDFAAVGEHAIRL  297
             +ND MALGVL A+ E G+  P DV LVGFDDI+ A  F P+LTTIRQDF ++G  AI  
Sbjct  271  AGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIET  330

Query  298  LISEISGEAAQNSYVVPAQLIVRQSSIRRSH  328
            L+S ++G+ +    + P+ ++ + ++  R+H
Sbjct  331  LLSTMAGQEPVRRQIPPTLVVRKSTAAPRPH  361

29) HMPREF9154_0797 in NC_018142


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  199 bits (738),  Expect = 3e-52, Method: Compositional matrix adjust.
 Identities = 144/336 (43%), Positives = 226/336 (68%), Gaps = 9/336 (2%)

Query  7    SKRPGLRDVAKIAGCSYQTVSRVVNDDARVSEETRERVLAAIEAVGYRRNAAARALVTSR  66
            ++ PG+ DVA++AG S  TVSRV+N+++ V  ETR RV AAI  +GYRRN+ ARAL + R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  67   PGAIGVVSDGSWRYGPMGALHGVEEAARNAGHSVLLTVQERDAFKSLEATLHRFADAFVD  126
            +++IGVV  GS  Y     L G+E +AR AG  + L+  + +A   L   ++R++D  V+
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  127  GIVVIAPLRAEAKTTREVAASFSWASGLPVVMLTPDPRPTPGIRVVTEDQKFGARLATRH  186
            G+ VIA+ +    +  +V A ++    ++VVM  +++ + P I  V  DQ +GARLA RH
Sbjct  146  GVAVIAARQVAVDALSDVVADIP----MSVVM--SGSVSNPRISFVELDQELGARLAVRH  199

Query  187  LVRLGHQHIVHLAGNQKWLDGSVRLEGWREELLSSGLPAPEPIFGDWTGQSGYHAGVRMI  246
            L  LGH++I HLAGN   +D++ R++GWR+EL  S   + + + GD T++SGY++++ + 
Sbjct  200  LRDLGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELA  259

Query  247  K--EGLPDAVFAASDLMALGMMRAFSEAGVRVPEDVSVVGFDDHEFARQFFPPLTTVRQD  304
            +  +GLP A+FA++DLMALG++ A++E G+  P+DVS+VGFDD   A +F+P+LTT+RQD
Sbjct  260  RSSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQD  319

Query  305  FKALGLRCLKVLLSG-SDDDHLSEPIRPRLLVRLST  339
            F +LG   +  LLS  ++++ +   I P L+VR ST
Sbjct  320  FMTLGSSAIETLLSTMAGQEPVRRQIPPTLVVRKST  355

30) lacI2 in NC_014623


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  197 bits (730),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 144/334 (44%), Positives = 219/334 (66%), Gaps = 6/334 (1%)

Query  16   GRTAVMADVAKLAEVSLQTVSRVLHDSPNVSDDTRKRVLKAIQQLNYRPNVAAQALVTGR  75
            GR++ M DVA++A VS  TVSRVL++ P+V  +TR RV  AI QL YR N  A+AL + R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  76   SRTLGVVSFDTALYGPASTLLGIQEAAHDAGYAVSIASLRSMKRASLFEAVQRLRGQGVE  135
            S T+GVV  +++LY  +  LLGI+ +A+ AGY +++AS ++   + L E V+RL +Q+VE
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  136  GVVIIAPQKSAVEALRRLPPGVPMVAVEGG--PDHSVPVVAVDQFGGAMAATRHLLELGH  193
            GV +IA+++ AV+AL  + +++PM  V +G  ++  ++ V +DQ  GA  A RHL +LGH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  194  RAIWHIAGPADWLEAEQRADGWRAALKDAGIRPPALLRGDWSARSGYELGRQLLQKPEV-  252
              I H+AG  + ++A  R +GWR  L  +   P  LL GD +A SGY  + +L + ++  
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  253  -TAVFVANDQMALGLLRRLHESGREAPRHLSIVGFDDIPEAAYFTPPLTTIRQDFAEVGR  311
             TA+F +ND MALG+L  L E G  AP ++S+VGFDDI+ A  F P+LTTIRQDF  +G 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  312  RCLHLLLGQLESPARPWEHVEVPAQFVLRESTAA  345
              ++ LL+ + +    + +  +P+ +V+R STAA
Sbjct  326  SAIETLLSTMAGQEPVRRQ--IPPTLVVRKSTAA  357

31) Bcav_3275 in NC_012669


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  197 bits (733),  Expect = 7e-52, Method: Compositional matrix adjust.
 Identities = 157/332 (48%), Positives = 233/332 (71%), Gaps = 7/332 (2%)

Query  1    MADVAKLAGVSHQTVSRVLNDHPSVRPATRQRVLDAMAELAYTPNRLARALVTRRSGLLG  60
            M DVA++AGVSH TVSRVLN+HPSVRP TR RV  A+A+L+Y  N +ARAL ++RS+ +G
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  61   VVTSGSAKYGPMSTLIaveeaaraagyavnvavvrSPTQESMGAVLASFDEQAVEGVVVI  120
            VV +GS+ Y     L+++E +ARAAGY +N+A  ++ +   ++ ++  + +Q+VEGV VI
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  121  APRATAVEALRAVDSRAPVILVAAGVGTDERFATVSVDQARGARLAVEHLVSLGHRTVAH  180
            A+R  AV+AL  V +  P+ +V +G  ++ R++ V +DQ  GARLAV HL  LGH  ++H
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITH  210

Query  181  VSGPDDWFDARERLAGWRSala-eaglegelvegDWTADVGYTAGRQLV--ADGVPGAIF  237
            ++G  + FDA  R+ GWR  LA  ++L  +L+EGD TA+ GY ++ +L   +DG+P AIF
Sbjct  211  LAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAIF  270

Query  238  AANDQLALGLLRAFAEAGVAVPGDVSVVGFDDIEGTAHFFPPLTTVRQDFTRLGEVCLEV  297
            A+ND +ALG+L A+AE G++ P+DVS+VGFDDI G+ HF+P+LTT+RQDF  LG   +E 
Sbjct  271  AGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIET  330

Query  298  LLaaiaagsttasaaPEPVAPELVVRSSTGPP  329
            LL    +  +   +    ++P LVVR ST++P
Sbjct  331  LL----STMAGQEPVRRQIPPTLVVRKSTAAP  358

32) RAM_22340 in NC_017186


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  197 bits (733),  Expect = 7e-52, Method: Compositional matrix adjust.
 Identities = 143/330 (44%), Positives = 213/330 (65%), Gaps = 5/330 (1%)

Query  18   RQPSLADVAGMAGVSHMTVSRVVNESGPVRPETRERVLAAVQKLGYRPNTAARALVTGRS  77
            R P++ DVA +AGVSH+TVSRV+N   +VRPETR RV AA+ +LGYR NT ARAL + RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  78   GTLGVVALESNLYGPASTLYGIENAAREAGYGVAICSVTRPGRTSIGDAVESLRRQAVEG  137
            +T+GVV   S LY  +  L GIE +AR AGY + + S    + + +++ V  L  Q+VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  138  IVVIAPHVTAGRALDAAPSDIPL-VAVGGGDAAP-VPVLSVDQYDGARRVTEHLLSLGHR  195
            + VIA++  A  AL    +DIP+ V ++G+ + P ++ + +DQ  GAR    HL  LGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  196  TVWHLAGPEDWLEARDRERGWRETLEGRGLRVPAVVRGDWSPRSGYEAGRALV-GKRGL-  253
             + HLAG  + ++A  R +GWR+ L         ++ GD ++ SGY ++  L  +  GL 
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  254  KAVFSANDQMALGLLRAFTEAGIRVPEDVHVAGFDDVPEAEYFTPPLTTVRQDFIEVGRR  313
             A+F++ND MALG+L A++E G+  P+DV + GFDD++ A+ F P+LTT+RQDF+ +G  
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  314  TFGLLEERMAGGDAGARHLVPAELVVREST  343
            ++  L   MAG ++  R+ +P+ LVVR ST
Sbjct  327  AIETLLSTMAGQEPVRRQ-IPPTLVVRKST  355

33) AMIS_52240 in NC_017093


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  197 bits (732),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 150/330 (46%), Positives = 217/330 (66%), Gaps = 6/330 (1%)

Query  1    MTDVARLAGVSHQTVSRVLNDHPNVKEQTRNRVRAAIAELNYRPNRAARALVTGRSQLIG  60
            M DVA++AGVSH TVSRVLN+HP+V+ +TR RV AAIA+L YR N  ARAL + RS  IG
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  61   VVARNSTLYGPASMLTEFEQAAADAGFAVSVGSVRELDRSTISAVVDRHLDQRVAGLvvi  120
            VV   S LY  + +L  +E +A  AG+ ++++S +    S ++ +V R  DQ V G+ VI
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  121  anvasaaealaEIPSDVPV-VFIDGDPAGGR-PVVTVDQVAGARAATRHLLDAGHETVWH  178
            A    A +AL+++ +D+P+ V + G  +  R + V +DQ  GAR A RHL D GHE + H
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITH  210

Query  179  VSGPTDWFDSAGRIQGWRQTLEEAGAEVPPLLSADWSAAEGYRAGQMLARMPEV--TAIF  236
            ++G  + FD+A+R+QGWR+ L  + +    LL +D +A  GYR++  LAR ++   TAIF
Sbjct  211  LAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAIF  270

Query  237  TANDHLALGILRALWERGRRVPHDVSLVGFDDVPEAAFFIPPLTTVRQAFGDVARAALSL  296
            ++ND +ALG+L AL E G   P+DVSLVGFDD++ A  FIP+LTT+RQ F  ++ +A+  
Sbjct  271  AGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIET  330

Query  297  LLGQMRDEPGTADHIVVPPQLVVRESVGRP  326
            LL+ M ++     +I  PP LVVR S + P
Sbjct  331  LLSTMAGQEPVRRQI--PPTLVVRKSTAAP  358

34) B737_4333 in NC_022116


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  197 bits (732),  Expect = 9e-52, Method: Compositional matrix adjust.
 Identities = 143/330 (44%), Positives = 213/330 (65%), Gaps = 5/330 (1%)

Query  19   RQPSLADVAGMAGVSHMTVSRVVNESGPVRPETRERVLAAVQKLGYRPNTAARALVTGRS  78
            R P++ DVA +AGVSH+TVSRV+N   +VRPETR RV AA+ +LGYR NT ARAL + RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  79   GTLGVVALESNLYGPASTLYGIENAAREAGYGVAICSVTRPGRTSIGDAVESLRRQAVEG  138
            +T+GVV   S LY  +  L GIE +AR AGY + + S    + + +++ V  L  Q+VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  139  IVVIAPHVTAGRALDAAPSDIPL-VAVGGGDAAP-VPVLSVDQYDGARRVTEHLLSLGHR  196
            + VIA++  A  AL    +DIP+ V ++G+ + P ++ + +DQ  GAR    HL  LGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  197  TVWHLAGPEDWLEARDRERGWRETLEGRGLRVPAVVRGDWSPRSGYEAGRALV-GKRGL-  254
             + HLAG  + ++A  R +GWR+ L         ++ GD ++ SGY ++  L  +  GL 
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  255  KAVFSANDQMALGLLRAFTEAGIRVPEDVHVAGFDDVPEAEYFTPPLTTVRQDFIEVGRR  314
             A+F++ND MALG+L A++E G+  P+DV + GFDD++ A+ F P+LTT+RQDF+ +G  
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  315  TFGLLEERMAGGDAGARHLVPAELVVREST  344
            ++  L   MAG ++  R+ +P+ LVVR ST
Sbjct  327  AIETLLSTMAGQEPVRRQ-IPPTLVVRKST  355

35) AMES_4333 in NC_018266


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  197 bits (732),  Expect = 9e-52, Method: Compositional matrix adjust.
 Identities = 143/330 (44%), Positives = 213/330 (65%), Gaps = 5/330 (1%)

Query  19   RQPSLADVAGMAGVSHMTVSRVVNESGPVRPETRERVLAAVQKLGYRPNTAARALVTGRS  78
            R P++ DVA +AGVSH+TVSRV+N   +VRPETR RV AA+ +LGYR NT ARAL + RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  79   GTLGVVALESNLYGPASTLYGIENAAREAGYGVAICSVTRPGRTSIGDAVESLRRQAVEG  138
            +T+GVV   S LY  +  L GIE +AR AGY + + S    + + +++ V  L  Q+VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  139  IVVIAPHVTAGRALDAAPSDIPL-VAVGGGDAAP-VPVLSVDQYDGARRVTEHLLSLGHR  196
            + VIA++  A  AL    +DIP+ V ++G+ + P ++ + +DQ  GAR    HL  LGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  197  TVWHLAGPEDWLEARDRERGWRETLEGRGLRVPAVVRGDWSPRSGYEAGRALV-GKRGL-  254
             + HLAG  + ++A  R +GWR+ L         ++ GD ++ SGY ++  L  +  GL 
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  255  KAVFSANDQMALGLLRAFTEAGIRVPEDVHVAGFDDVPEAEYFTPPLTTVRQDFIEVGRR  314
             A+F++ND MALG+L A++E G+  P+DV + GFDD++ A+ F P+LTT+RQDF+ +G  
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  315  TFGLLEERMAGGDAGARHLVPAELVVREST  344
            ++  L   MAG ++  R+ +P+ LVVR ST
Sbjct  327  AIETLLSTMAGQEPVRRQ-IPPTLVVRKST  355

36) AMED_4387 in NC_014318


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  197 bits (732),  Expect = 9e-52, Method: Compositional matrix adjust.
 Identities = 143/330 (44%), Positives = 213/330 (65%), Gaps = 5/330 (1%)

Query  19   RQPSLADVAGMAGVSHMTVSRVVNESGPVRPETRERVLAAVQKLGYRPNTAARALVTGRS  78
            R P++ DVA +AGVSH+TVSRV+N   +VRPETR RV AA+ +LGYR NT ARAL + RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  79   GTLGVVALESNLYGPASTLYGIENAAREAGYGVAICSVTRPGRTSIGDAVESLRRQAVEG  138
            +T+GVV   S LY  +  L GIE +AR AGY + + S    + + +++ V  L  Q+VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  139  IVVIAPHVTAGRALDAAPSDIPL-VAVGGGDAAP-VPVLSVDQYDGARRVTEHLLSLGHR  196
            + VIA++  A  AL    +DIP+ V ++G+ + P ++ + +DQ  GAR    HL  LGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  197  TVWHLAGPEDWLEARDRERGWRETLEGRGLRVPAVVRGDWSPRSGYEAGRALV-GKRGL-  254
             + HLAG  + ++A  R +GWR+ L         ++ GD ++ SGY ++  L  +  GL 
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  255  KAVFSANDQMALGLLRAFTEAGIRVPEDVHVAGFDDVPEAEYFTPPLTTVRQDFIEVGRR  314
             A+F++ND MALG+L A++E G+  P+DV + GFDD++ A+ F P+LTT+RQDF+ +G  
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  315  TFGLLEERMAGGDAGARHLVPAELVVREST  344
            ++  L   MAG ++  R+ +P+ LVVR ST
Sbjct  327  AIETLLSTMAGQEPVRRQ-IPPTLVVRKST  355

37) lacI in NC_021252


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  196 bits (727),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 139/332 (42%), Positives = 217/332 (66%), Gaps = 5/332 (1%)

Query  8    SKQASLTDVAALAGVSHMTVSRVINGTGPVRAETRVRVNAAIEQLDYRPNSVARALVTGR  67
            ++ +++ DVA +AGVSH+TVSRV+NG  +VR+ETR RV+AAI QL+YR N+VARAL + R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  68   SGTLGVVALEANLYGPASTLSGIEHAAREAGYATTITSISRPGRSSITDAVERLRRQAVE  127
            S+T+GVV   + LY  +  L GIE +AR AGY   ++S    + S +++ V RL  Q+VE
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  128  GIVVIAPHVTAARALEAAPSDVPLVAV--GGGEKAPVPVISVDQYDGARRATEHLLGLGH  185
            G+ VIA++  A  AL    +D+P+  V  G+  ++ ++ + +DQ  GAR A  HL +LGH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  186  DTVWHVAGPEDWLEALDRERGWRETLERHGAPIPPVVRGDWSARSGYAAGRSLV-GEKGL  244
            + + H+AG  + ++A  R +GWR+ L    +    ++ GD +A SGY ++  L  +  GL
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  245  -DAVFVANDQMALGFLRACTEAGVNVPGEMRIVGFDDVPEAAYYTPPLTTVRQDFVEVGR  303
              A+F +ND MALG L A +E G++ P+++ +VGFDD++ A  + P+LTT+RQDF+ +G 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  304  RTFDLLRRRMNGGENRDRDLVVPELIVRESTG  335
             +++ L   M G E   R+ + P L+VR ST+
Sbjct  326  SAIETLLSTMAGQEPVRRQ-IPPTLVVRKSTA  356

38) SC3A7.17 in NC_003888


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  195 bits (724),  Expect = 4e-51, Method: Compositional matrix adjust.
 Identities = 148/342 (44%), Positives = 220/342 (65%), Gaps = 8/342 (2%)

Query  16   RTADDGAARQPGMADVARLAGVSAQTVSRTLAGHPNVQHTTRAKVLAAVEELGYRKNNAA  75
            R + +  +R PGM DVA++AGVS  TVSR L GHP+V+  TRA+V AA+ +LGYR+N  A
Sbjct  19   RVGVQVMGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVA  78

Query  76   RMLSSGRSRTIGVVTLRTTFYSRANLLFGIEAAAREAGYavstaatasldtaaIESALSR  135
            R L S RS TIGVV   + +Y  + +L+GIE++AR AGY ++ A+  +  ++ +   + R
Sbjct  79   RALKSKRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRR  138

Query  136  LAEQDVEGvvlsvplvhvspRIERLTRSVP-TVTVDGS-RTPATEIVAVDQTLAARLATR  193
            L++Q VEGV +  +       +  +   +P +V + GS   P   +V +DQ L+ARLA R
Sbjct  139  LTDQSVEGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVR  198

Query  194  HLIELGHKAVWHVSGPQEWLDAASRCAGWRDTLE-EAGLSVPPVLEGDWTPASGYRNGLV  252
            HL +LGH  + H++G  E +DAA+R  GWRD L   ++L+   +LEGD T+ SGYR ++ 
Sbjct  199  HLRDLGHERITHLAGNFETFDAAARVQGWRDELACSPSLP-QQLLEGDFTAESGYRGAME  257

Query  253  LGKIPDV--TAVFVASDEMAFGVIRALHELGRRVPEDISVVGVDDIALAEYCSPSLTTVA  310
            L++ +D   TA+F ++D MA+GV+ AL ELG   P+D+S+VG DDIA A+   P+LTT+ 
Sbjct  258  LARSSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIR  317

Query  311  QPFAEMGALAVAHLLRHIADPDAAPEPASVEPVLVVRASTAA  352
            Q F  +G+ A+  LL  +A+ +  P    + P LVVR STAA
Sbjct  318  QDFMTLGSSAIETLLSTMAGQE--PVRRQIPPTLVVRKSTAA  357

39) VAB18032_19580 in NC_015434


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  194 bits (719),  Expect = 8e-51, Method: Compositional matrix adjust.
 Identities = 131/316 (42%), Positives = 209/316 (67%), Gaps = 7/316 (2%)

Query  1    MLNGHPNVREQTRLRVQAAIAELGYRPNRAARALVTGRSQVIGVVAQNTTLYGPASLLAA  60
            +LNGHP+VR +TR RV+AAIA+LGYR N  ARAL + RS  IGVV   + LY  + +L +
Sbjct  48   VLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIGVVMAGSGLYELPRVLLG  107

Query  61   LEQTAAESGFAVSVGSVRDLDHRSISAVVERHLAHRVAGIVVIAPVESAGEALERLPNDV  120
            +E TA  +G+ ++++S ++     ++ +V R   + V G+ VIA+ + A +AL  +  D+
Sbjct  108  IETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVIAARQVAVDALSDVVADI  167

Query  121  PL-VTVDGDPRRP-MPLVTVDQAAGARAATQHLLDAGHRTVWHVSGPSDWFDSAGRIEGW  178
            P+ V + G    P +++V +DQ  GAR A +HL D GH  + H++G  + FD+A+R++GW
Sbjct  168  PMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITHLAGNFETFDAAARVQGW  227

Query  179  RSALLSAGVEIPPLVPADWSAAAGYRCGQMLARMPDV--TAVFTANDHLALGVLRALHEH  236
            R  L  +      L+ +D +A +GYR +  LAR +D   TA+F++ND +ALGVL AL E 
Sbjct  228  RDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAIFAGNDLMALGVLAALAEL  287

Query  237  GRRVPDDISVVGFDDVPEAAYFIPPLTTVRPDFVAVARASLEMLLAQIETDSGGALRETI  296
            G   PDD+S+VGFDD++ A  FIP+LTT+R DF++++ +++E LL+ +  +   ++R  I
Sbjct  288  GLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIETLLSTMAGQE--PVRRQI  345

Query  297  APSLVSRQSVGPP-PH  311
            +P+LV R+S ++P PH
Sbjct  346  PPTLVVRKSTAAPRPH  361

40) B737_4342 in NC_022116


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  193 bits (718),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 151/332 (46%), Positives = 213/332 (65%), Gaps = 5/332 (1%)

Query  19   RQPSLTDVAGVAGVSHMTVSRVINGTGPVRPETRARVLAAIEELGYRPNSAARALVTGRT  78
            R P++ DVA VAGVSH+TVSRV+NG  +VRPETRARV AAI +LGYR N+ ARAL + R+
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  79   GTLGVVALESNLYGPASTLYGIENAAREAGYAITISSVSRPGRSSIADAVENLRRQAVEG  138
            +T+GVV   S LY  +  L GIE +AR AGY I ++S    + S +A+ V  L  Q+VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  139  VIVIAPHVSAGRALEAAPADFpvvavgggeaapvpv--ISVDQRDGARRATEHLLALGHR  196
            V VIA++  A  AL    AD+P+  V +G  +   +  + +DQ  GAR A  HL  LGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  197  TVWHIAGPEDWLEARDRELGWRETLERHGVGAPRVIRGDWSSRSGYEAGRSLAKEKD-L-  254
             + H+AG  + ++A  R  GWR+ L      + +++ GD ++ SGY ++  LA+  D L 
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  255  DAVFAGNDQMALGLLRAFAEAGISVPRDVRVAGFDDVPEAAYFTPPLTTVRQDFIEVGRR  314
             A+FAGND MALG+L A+AE G+S P DV + GFDD++ A  F P+LTT+RQDF+ +G  
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  315  TFGLLAGRMDGGDRHARALVVPELIVRESTGP  346
            ++  L + M G +   R  + P L+VR ST++
Sbjct  327  AIETLLSTMAGQE-PVRRQIPPTLVVRKSTAA  357

41) RAM_22390 in NC_017186


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  193 bits (718),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 151/332 (46%), Positives = 213/332 (65%), Gaps = 5/332 (1%)

Query  19   RQPSLTDVAGVAGVSHMTVSRVINGTGPVRPETRARVLAAIEELGYRPNSAARALVTGRT  78
            R P++ DVA VAGVSH+TVSRV+NG  +VRPETRARV AAI +LGYR N+ ARAL + R+
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  79   GTLGVVALESNLYGPASTLYGIENAAREAGYAITISSVSRPGRSSIADAVENLRRQAVEG  138
            +T+GVV   S LY  +  L GIE +AR AGY I ++S    + S +A+ V  L  Q+VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  139  VIVIAPHVSAGRALEAAPADFpvvavgggeaapvpv--ISVDQRDGARRATEHLLALGHR  196
            V VIA++  A  AL    AD+P+  V +G  +   +  + +DQ  GAR A  HL  LGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  197  TVWHIAGPEDWLEARDRELGWRETLERHGVGAPRVIRGDWSSRSGYEAGRSLAKEKD-L-  254
             + H+AG  + ++A  R  GWR+ L      + +++ GD ++ SGY ++  LA+  D L 
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  255  DAVFAGNDQMALGLLRAFAEAGISVPRDVRVAGFDDVPEAAYFTPPLTTVRQDFIEVGRR  314
             A+FAGND MALG+L A+AE G+S P DV + GFDD++ A  F P+LTT+RQDF+ +G  
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  315  TFGLLAGRMDGGDRHARALVVPELIVRESTGP  346
            ++  L + M G +   R  + P L+VR ST++
Sbjct  327  AIETLLSTMAGQE-PVRRQIPPTLVVRKSTAA  357

42) AMES_4342 in NC_018266


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  193 bits (718),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 151/332 (46%), Positives = 213/332 (65%), Gaps = 5/332 (1%)

Query  19   RQPSLTDVAGVAGVSHMTVSRVINGTGPVRPETRARVLAAIEELGYRPNSAARALVTGRT  78
            R P++ DVA VAGVSH+TVSRV+NG  +VRPETRARV AAI +LGYR N+ ARAL + R+
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  79   GTLGVVALESNLYGPASTLYGIENAAREAGYAITISSVSRPGRSSIADAVENLRRQAVEG  138
            +T+GVV   S LY  +  L GIE +AR AGY I ++S    + S +A+ V  L  Q+VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  139  VIVIAPHVSAGRALEAAPADFpvvavgggeaapvpv--ISVDQRDGARRATEHLLALGHR  196
            V VIA++  A  AL    AD+P+  V +G  +   +  + +DQ  GAR A  HL  LGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  197  TVWHIAGPEDWLEARDRELGWRETLERHGVGAPRVIRGDWSSRSGYEAGRSLAKEKD-L-  254
             + H+AG  + ++A  R  GWR+ L      + +++ GD ++ SGY ++  LA+  D L 
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  255  DAVFAGNDQMALGLLRAFAEAGISVPRDVRVAGFDDVPEAAYFTPPLTTVRQDFIEVGRR  314
             A+FAGND MALG+L A+AE G+S P DV + GFDD++ A  F P+LTT+RQDF+ +G  
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  315  TFGLLAGRMDGGDRHARALVVPELIVRESTGP  346
            ++  L + M G +   R  + P L+VR ST++
Sbjct  327  AIETLLSTMAGQE-PVRRQIPPTLVVRKSTAA  357

43) AMED_4396 in NC_014318


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  193 bits (718),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 151/332 (46%), Positives = 213/332 (65%), Gaps = 5/332 (1%)

Query  19   RQPSLTDVAGVAGVSHMTVSRVINGTGPVRPETRARVLAAIEELGYRPNSAARALVTGRT  78
            R P++ DVA VAGVSH+TVSRV+NG  +VRPETRARV AAI +LGYR N+ ARAL + R+
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  79   GTLGVVALESNLYGPASTLYGIENAAREAGYAITISSVSRPGRSSIADAVENLRRQAVEG  138
            +T+GVV   S LY  +  L GIE +AR AGY I ++S    + S +A+ V  L  Q+VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  139  VIVIAPHVSAGRALEAAPADFpvvavgggeaapvpv--ISVDQRDGARRATEHLLALGHR  196
            V VIA++  A  AL    AD+P+  V +G  +   +  + +DQ  GAR A  HL  LGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  197  TVWHIAGPEDWLEARDRELGWRETLERHGVGAPRVIRGDWSSRSGYEAGRSLAKEKD-L-  254
             + H+AG  + ++A  R  GWR+ L      + +++ GD ++ SGY ++  LA+  D L 
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  255  DAVFAGNDQMALGLLRAFAEAGISVPRDVRVAGFDDVPEAAYFTPPLTTVRQDFIEVGRR  314
             A+FAGND MALG+L A+AE G+S P DV + GFDD++ A  F P+LTT+RQDF+ +G  
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  315  TFGLLAGRMDGGDRHARALVVPELIVRESTGP  346
            ++  L + M G +   R  + P L+VR ST++
Sbjct  327  AIETLLSTMAGQE-PVRRQIPPTLVVRKSTAA  357

44) KSE_74100 in NC_016109


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  192 bits (714),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 156/335 (47%), Positives = 224/335 (67%), Gaps = 6/335 (1%)

Query  11   RQPVMADVAKLAGVSHQTVSRVLNGAPHVRPGTRERVLAAIRELDYRPNSAARALVTRRS  70
            R P M DVA++AGVSH TVSRVLNG P VRP TR RV AAI +L+YR N+ ARAL ++RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  71   QTLGVVSFESTLYGPASMLDGIERAARSAGYFVSVASLRSLDSRSVQEAVDRLRDQGVEG  130
             T+GVV   S LY  + +L GIE +AR+AGY +++AS ++  +  + E V RL DQ+VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  131  VVVIAPQ--TsavsavaklsssvpvvavgsgarssIPTVTVDNRSGAEAATRHLLDLGHR  188
            V VIA++  +    +      +++VV  GS + + I+ V +D+  GA  A RHL DLGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  189  TVHHLAGPAGWLESQDRQEGWRLALETAGLRPPAPALGDWSARSGYEAGQRIARLADV--  246
             + HLAG    +++  R +GWR  L  +   P     GD +A SGY ++  +AR +D   
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  247  TAVFCANDHMALGLLRALHEAGRPVPGDLSVVGFDDIPEAAYFIPPLSTVRQDFGELGRR  306
            TA+F +ND MALG+L AL E G + P+D+S+VGFDDI+ A  FIP+L+T+RQDF  LG  
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  307  ALELLVAELGGSAHPLTRVQIAPELVLRRSTGPAH  341
            A+E L++ ++G  +P+ R QI+P LV+R+ST++++
Sbjct  327  AIETLLSTMAGQ-EPVRR-QIPPTLVVRKSTAAPR  359

45) Ndas_0748 in NC_014210


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  192 bits (712),  Expect = 3e-50, Method: Compositional matrix adjust.
 Identities = 138/313 (45%), Positives = 212/313 (68%), Gaps = 4/313 (1%)

Query  6    GRTPVMADVARLAGVSHQTVSRVVNGHPNVREETVLRVRDAIEELGYHRNSTARALVTRR  65
            GR+P M DVA++AGVSH TVSRV+NGHP+VR ET  RV  AI +LGY+RN+ ARAL ++R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  66   TNVLGVIAFDPTLFGPAQTLAGIERAAREAGYFLSMVSLDDVSPEGVVAAADYLIQQSVE  125
            ++ +GV+  ++ L+  ++ L GIE +AR AGY +++ S ++ ++ ++      L +QSVE
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  126  GCVAIAPQRALVEALAALPGPGPLVAVEGGEGSG--LPVVCVDQAQGAHDAVRHLLDLGH  183
            G   IA+++  V+AL+ + +  P+  V +G  S   ++ V +DQ  GA+ AVRHL DLGH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  184  TTVHHVEGDPLWLESAARVVGWRRALEEAGAPVPEPLQGDWSPRSGYELGLALVRRRASG  243
              + H+ G+   +++AARV GWR  L  + +   + L+GD ++ SGY  ++ L   R+S+
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELA--RSSD  263

Query  244  ERVTAIFVGNDQMAIGVLRALHEADLHVPGDVSVVGFDDIPEAEYLTPSLTTVHQDFAQV  303
               TAIF GND MA+GVL AL E +L  P+DVS+VGFDDI+ A+ + P+LTT++QDF  +
Sbjct  264  GLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTL  323

Query  304  GRESLALLLAEIA  316
            G  ++  LL+ +A
Sbjct  324  GSSAIETLLSTMA  336

46) Trad_1487 in NC_014221


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  192 bits (712),  Expect = 3e-50, Method: Compositional matrix adjust.
 Identities = 144/340 (43%), Positives = 226/340 (67%), Gaps = 11/340 (3%)

Query  10   KAVTLNDVARAAGVSHQTVSRVINEHPSVAPATRARVLAAIRELGYRPNALARKLVTGRS  69
            +A  + DVA+ AGVSH TVSRV+N HPSV P TRARV AAI +LGYR N++AR L + RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  70   KTVGIVGFGTTFYGPAQMVLSVERALKGRGYGFALASVDDLERPSLEGAVRELGRHDVEG  129
             T+G+V  G+ +Y  ++++L++E + ++ GY + LAS ++   + L   VR L  + VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  130  LILITPLREVSLAEIDALCGGRPF--VMIDVAKGSPLPSVVIDQGHGSALATRHLVDLGH  187
            + +I++ R+V++  +  + ++ P   VM +    + ++ V +DQ  G+ LA RHL DLGH
Sbjct  147  VAVIAA-RQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  188  HHVAEISGPLAWHDAWARHEAWRETLLKAGLTPGRSVEGDWTAEGGYRAAEALLSSGERF  247
            +++++++G +   DA AR ++WR+ L  +   P + +EGD TAE+GYR+A  L  S++ +
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  248  -TALVVGNDQMALGALAALSERGVRVPEEVSVVGFDDVPEARFYRPPLTTVRQDFAELGT  306
             TA+  GND MALG LAAL+E G+  P++VS+VGFDD++ A  + P+LTT+RQDF  LG+
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  307  RSAALILKAIEARRAPQLPPRPEQVCLTPELVVRLSTAPP  346
             +   +L ++ +    Q P R +   + P LVVR STA+P
Sbjct  326  SAIETLLSTMAG----QEPVRRQ---IPPTLVVRKSTAAP  358

47) Gobs_0241 in NC_013757


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  191 bits (710),  Expect = 4e-50, Method: Compositional matrix adjust.
 Identities = 141/324 (44%), Positives = 214/324 (67%), Gaps = 8/324 (2%)

Query  1    MGPEGASRALVMSDVAARAGVSHQTVSRVINGHRNVAPGTRERVEQAIRELGYRPNTAAR  60
            +G +  +RA  M DVA  AGVSH TVSRV+NGH +V P TR RVE AI +LGYR NT AR
Sbjct  20   VGVQVMGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVAR  79

Query  61   ALVTGSTRTLGFVTVNINQYGPGQTLVGLERAARAAGYSLSVTVLDEATADAMRDAVDRF  120
            AL +  + T+G V      Y   + L+G+E +ARAAGY ++++  + ++A  + + V R+
Sbjct  80   ALKSKRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRL  139

Query  121  VAQSVDAVLALATYDDAAEALHAVDTPLPLVTVQSGGALEEPAVG---VDQVAGARLATR  177
              QSV++V  +A+ + A +AL  V + +P+  V S G++ +P ++   +DQ  GARLA R
Sbjct  140  TDQSVEGVAVIAARQVAVDALSDVVADIPMSVVMS-GSVSNPRISFVELDQELGARLAVR  198

Query  178  HLLDLGHRTVHHVTGPADSQESRDRVEGWRAELVAAGAAVPVCVHGDWTPSSGHRAGRLL  237
            HL DLGH  + H++G  ++ ++  RV+GWR EL  + +     ++GD T+ SG R++  L
Sbjct  199  HLRDLGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMEL  258

Query  238  ATRRREGEEV-TAVFVANDQMAMGLLAAFHEEGLEAPRDVSVVGFDDLPEAPYLTPPLTT  296
            A   R ++ + TA+F +ND MA+G+LAA+ E GL AP DVS+VGFDD++ A  + P+LTT
Sbjct  259  A---RSSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTT  315

Query  297  VRQDFAELGHRAVQLVLARLAGRE  320
            +RQDF  LG  A++ +L+ +AG+E
Sbjct  316  IRQDFMTLGSSAIETLLSTMAGQE  339

48) KSE_73880 in NC_016109


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  191 bits (708),  Expect = 8e-50, Method: Compositional matrix adjust.
 Identities = 143/337 (43%), Positives = 218/337 (65%), Gaps = 10/337 (2%)

Query  8    RPPTMADVAQVAGVSHQTVSRVLSDHPNVREATRERVLRAIAELGYRPNSAARTLVTRRS  67
            R+P M DVAQVAGVSH TVSRVL++HP+VR  TR RV  AIA+LGYR N+ AR+L ++RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  68   RTLGVVAANTTLFGPASILAGLERAARREDYLVASVGLEELTEHALASALERLGSWGVDG  127
             T+GVV A + L+  + +L G+E +AR  +Y +   + +  +   LA  + RL   +V+G
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  128  AVVMTPHRHTVTALARLPQPFPVVTVAGGHDLD--LPGVAVDQVGGARAVTEHLIGLGHT  185
              V+++++ +V AL+ +   +P+  V +G   +  ++ V +DQ  GAR    HL +LGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  186  RIWHVAGPGEWIEAEGRLRGWRAALEAAGLPVPAH-LAGDWSPASGHAAGREIARAFRSG  244
            RI H+AG  E ++A +R++GWR  L  +  ++P + L GD ++ SG  ++ E+AR+    
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSP-SLPQQLLEGDFTAESGYRGAMELARS----  261

Query  245  AASRPTAVFAANDHMALGVLRALHEAGVRIPLDVAVAGFDDLPEGAYLTPPLTTVRQDFP  304
            + + PTA+FA+ND MALGVL AL E G+  P DV++ GFDD++ +  + P+LTT+RQDF 
Sbjct  262  SDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFM  321

Query  305  AVGREGIALLLRLIDEPATPVAHLSVRPELVVRASTA  341
            ++G  +I  LL  +     PV +  + P LVVR STA
Sbjct  322  TLGSSAIETLLSTMAGQE-PVRR-QIPPTLVVRKSTA  356

49) Micau_3671 in NC_014391


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  189 bits (702),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 146/334 (44%), Positives = 227/334 (68%), Gaps = 6/334 (1%)

Query  2    RGPAMTDVARLAGVSHQTVSRVLNGHPNVREQTRLRVQAAITELGYRPNRAARALVTGRS  61
            R+P+M DVA++AGVSH TVSRVLNGHP+VR +TR RV+AAI++LGYR N  ARAL + RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  62   QVIGVVAQNTTLYGPasllaaleqtaaeagfaVSVGSVRDLDHRSISAAVERHLAHRVAG  121
              IGVV   + LY  + +L ++E TA  AG+ ++++S ++     ++  V R   + V G
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  122  IVVIAPVESAGEALERLPQDVPL-VTVDGDPRRP-IPLVTVDQVAGARAATEHLLAAGHR  179
            + VIA+ + A +AL  +  D+P+ V + G    P I++V +DQ  GAR A  HL   GH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  180  TVWHVSGPSDWFDSAGRIEGWREALRQAGAEIPPLVPADWSAAAGYRCGQMLARMPEV--  237
             + H++G  + FD+A+R++GWR+ L  + +    L+ +D +A +GYR +  LAR ++   
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  238  TAVFTANDHLALGVLRALHEHGRRVPDDISVVGFDDVPEAAYFIPPLTTVRPDFGavaaa  297
            TA+F++ND +ALGVL AL E G   PDD+S+VGFDD++ A  FIP+LTT+R DF +++++
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  298  sldlllaQIESQTVGPLRQTIAPTLVPRRSVGPP  331
            +++ LL+ + +Q   P+R+ I+PTLV R+S ++P
Sbjct  327  AIETLLSTMAGQ--EPVRRQIPPTLVVRKSTAAP  358

50) ML5_4727 in NC_014815


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  189 bits (702),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 146/334 (44%), Positives = 227/334 (68%), Gaps = 6/334 (1%)

Query  2    RGPAMTDVARLAGVSHQTVSRVLNGHPNVREQTRLRVQAAITELGYRPNRAARALVTGRS  61
            R+P+M DVA++AGVSH TVSRVLNGHP+VR +TR RV+AAI++LGYR N  ARAL + RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  62   QVIGVVAQNTTLYGPasllaaleqtaaeagfaVSVGSVRDLDHRSISAAVERHLAHRVAG  121
              IGVV   + LY  + +L ++E TA  AG+ ++++S ++     ++  V R   + V G
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  122  IVVIAPVESAGEALERLPQDVPL-VTVDGDPRRP-IPLVTVDQVAGARAATEHLLAAGHR  179
            + VIA+ + A +AL  +  D+P+ V + G    P I++V +DQ  GAR A  HL   GH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  180  TVWHVSGPSDWFDSAGRIEGWREALRQAGAEIPPLVPADWSAAAGYRCGQMLARMPEV--  237
             + H++G  + FD+A+R++GWR+ L  + +    L+ +D +A +GYR +  LAR ++   
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  238  TAVFTANDHLALGVLRALHEHGRRVPDDISVVGFDDVPEAAYFIPPLTTVRPDFGavaaa  297
            TA+F++ND +ALGVL AL E G   PDD+S+VGFDD++ A  FIP+LTT+R DF +++++
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  298  sldlllaQIESQTVGPLRQTIAPTLVPRRSVGPP  331
            +++ LL+ + +Q   P+R+ I+PTLV R+S ++P
Sbjct  327  AIETLLSTMAGQ--EPVRRQIPPTLVVRKSTAAP  358

51) Caci_4705 in NC_013131


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  189 bits (703),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 135/314 (43%), Positives = 211/314 (68%), Gaps = 5/314 (1%)

Query  5    VGDRAPVMADVARVAGVSQQTVSRVLNDRPNVRPATRDRVLGAIRELGYRPNAAARTLVT  64
            V +RAP M DVA+VAGVS+ TVSRVLN++P+VRP TR RV +AI +LGYR N+ AR+L +
Sbjct  24   VMGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKS  83

Query  65   RRSNTLGVISFNTTLYGPASMLYGIEQAAKQHDYFVTVAALAAMDRRSVFEAVERLRDQA  124
            +RS+T+GV+   + LY  + +L GIE +A+  +Y + +A+  +     + E V RL DQ+
Sbjct  84   KRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQS  143

Query  125  VEGIIVIAPQTTAVSALANMPSDVPLVAV--GCGVHAALSAVAVDNEAGAERATSYLLDL  182
            VEG+ VIA++  AV AL+++ +D+P+  V  G   ++ +S V +D+E GA  A   L DL
Sbjct  144  VEGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDL  203

Query  183  GHRTVHHLAGPRTWLDAQEREAGWRRALTVRGAEVAEPFKGGDWSARTGYDLGRQIVRDP  242
            GH  + HLAG    +DA  R  GWR  L+  ++ +++ +  GD +A +GY  + ++ R +
Sbjct  204  GHERITHLAGNFETFDAAARVQGWRDELAC-SPSLPQQLLEGDFTAESGYRGAMELARSS  262

Query  243  G--VTSVFCANDHLALGLMRALQAAGRRVPEDVSVIGFDDIPDAEFFGPALTTVRQDFDE  300
            +   T++F +ND +ALG++ AL   G   P+DVS++GFDDI++A+ F PALTT+RQDF  
Sbjct  263  DGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMT  322

Query  301  LGRRALLALIRSIG  314
            LG  A+ +L+ +++
Sbjct  323  LGSSAIETLLSTMA  336

52) CMM_2696 in NC_009480


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  189 bits (700),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 139/335 (42%), Positives = 210/335 (63%), Gaps = 5/335 (1%)

Query  29   GRTVSMADVAAHAGVSAQTVSRVSNGAQNVEASTRQRVMDAMAELGYRPNSAARALKTGR  88
            GR+ +M DVA  AGVS  TVSRV NG  +V + TR RV  A+A+LGYR N+ ARALK+ R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  89   FRSIGIIMFTLSTLGNMRTLDAIVTAASGAGYTITLMPVPHPTEGEVAGAFSRLQEEAVD  148
              +IG++M   +     R L +I T+A +AGY I L +    + +++A    RL +++V+
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  149  GVVIIIEAHM-LDRADviipvglpvviiDSDAGDP-FVVVDTDQEQGTRLVTQHLLDLGH  206
            GV +I   ++ +D    +++     V++ +  ++P +  V+ DQE G+RL  +HL DLGH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  207  TAIVHVAGPSTSYSAARRAAEWRATMLDAGLQPEDPAQGDWTTASGYRIGKELGRRAD--  264
              I H+AG   ++ AA R   WR  +  +   P++  +GD T+ SGYR + EL+R +D  
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  265  ITGIVAANDQMALGIMHALHELGRDVPGDISVVGFDDTEESSSFWPPLTTVHQDFTEIGR  324
             T+I A+ND MALG++ AL ELG   P+D+S+VGFDD   +  F P+LTT++QDF  +G 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  325  RSMQVLLEMLDGREPSGDRIVPTRLVVRESAAAPR  359
             +++ LL  + G+EP   R +P  LVVR S+AAPR
Sbjct  326  SAIETLLSTMAGQEPV-RRQIPPTLVVRKSTAAPR  359

53) Franean1_4680 in NC_009921


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  188 bits (696),  Expect = 6e-49, Method: Compositional matrix adjust.
 Identities = 143/335 (43%), Positives = 222/335 (67%), Gaps = 6/335 (1%)

Query  5    GRPPALTDVARLVGVSHQTVSRVVNNHPGVRPRTRERVLAGLRELGYRPNPAARALATGR  64
            GR+P++ DVA++ GVSH TVSRV+N HP+VRP TR RV A++ +LGYR N  ARAL + R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  65   SRTLGVLALTGTLYGPTSTLYAVEQAARAADYQVTVVSLHSLDPGAVRQAIRRLLAGGID  124
            S T+GV+   + LY     L ++E +ARAA+Y++ + S ++  ++ + + +RRL   +++
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  125  GIVaiaplldaadslsavasRLPLVAVEGRPDGD--FATVSVDQEHGARAATEHLLAAGH  182
            G+  IA+   A D+LS V + +P+  V + + ++  ++ V +DQE GAR A  HL   GH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  183  PTVRHVAGPPDWYEGAGRIAGWRTALDAAGAAVHPPLAGDWTaragfaagrrlarEPD-L  241
              + H+AG  + +++A+R+ GWR  L  + +  +  L GD TA +G+ ++  LAR +D L
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  242  -TAVFVANDQMALGILRALREGGRRIPEDVSVVGFDDIPEAEYFSPPLTTLRQDFTEVGR  300
             TA+F +ND MALG+L AL E G   P+DVS+VGFDDI+ A+ F P+LTT+RQDF  +G 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  301  QSLRSLLEQVETGTAGRTHVVIPPELVLRRSTAPP  335
             ++ +LL  +    + R +  IPP LV+R+STA+P
Sbjct  326  SAIETLLSTMAGQEPVRRQ--IPPTLVVRKSTAAP  358

54) L083_4940 in NC_021191


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  187 bits (695),  Expect = 6e-49, Method: Compositional matrix adjust.
 Identities = 149/342 (44%), Positives = 224/342 (66%), Gaps = 15/342 (4%)

Query  6    ARSPAMTDVAKLAGVSHQTVSRVLNDHPNVREQTRLRVRAAIAELGYRPNRAARALVTGR  65
            +R+P+M DVA++AGVSH TVSRVLN+HP+VR +TR RV AAIA+LGYR N  ARAL + R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  66   SQLIGVVAQNTTLYGPasllaafeqaaaetgfaVSV----GSVSRLDRESIAAAVDRHLD  121
            S  IGVV   + LY  + +L ++E +A  +G+ +++    G+ +      +A  V R  D
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAA----SDLAEMVRRLTD  141

Query  122  QRVAGLVVIAPVASAVEALEGMPADVPL-VTIDGDPARSQ-ALVTVDQAAGARLATELLL  179
            Q V G+ VIA+   AV+AL ++ AD+P+ V + G  + ++ ++V +DQ  GARLA   L 
Sbjct  142  QSVEGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLR  201

Query  180  AAGHRTVWHVSGPPDWYDAAGRIQGWRAALVDAGAEVPPMVAGEWSPSSGYDAGRMLARM  239
              GH  + H++G  + +DAA+R+QGWR  L  + +    ++ G+ ++ SGY ++  LAR 
Sbjct  202  DLGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARS  261

Query  240  PEV--TAIFTANDAQALGLLRALHEHGLRVPEDVSVVGFDDVPEASFFIPPLTTVRQAFD  297
            ++   TAIF++ND  ALG+L AL E GL  P+DVS+VGFDD++ A  FIP+LTT+RQ F 
Sbjct  262  SDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFM  321

Query  298  EVAHAGLGLLLKQISQRAGQVPEQVVIAPTLVERASVGRPRS  339
             ++ +++  LL  +   AGQ P +  I+PTLV R S + PR+
Sbjct  322  TLGSSAIETLLSTM---AGQEPVRRQIPPTLVVRKSTAAPRP  360

55) CMN_02655 in NC_020891


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  187 bits (695),  Expect = 7e-49, Method: Compositional matrix adjust.
 Identities = 139/341 (41%), Positives = 214/341 (63%), Gaps = 15/341 (4%)

Query  18   GRTVSMADVAAHAGVSAQTVSRVSNGAQNVEASTRQRVMDAMAELGYRPNSAARALKTGR  77
            GR+ +M DVA  AGVS  TVSRV NG  +V + TR RV  A+A+LGYR N+ ARALK+ R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  78   FRSIGIIM-----FTLSTLGNMRTLDAIVTAASGAGYTITLMPVPHPTEGEVAGAFSRLQ  132
              +IG++M     + L+     R L +I T+A +AGY I L +    + +++A    RL 
Sbjct  86   SSTIGVVMAGSGLYELP-----RVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLT  140

Query  133  EEAVDGVVIIIEAHM-LDRADviipvglpvviiDSDAGDP-FVVVDTDQEQGTRLVTQHL  190
            +++V+GV +I   ++ +D    +++     V++ +  ++P +  V+ DQE G+RL  +HL
Sbjct  141  DQSVEGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHL  200

Query  191  LDLGHTAIVHVAGPSTSYSAARRAAEWRATMLDAGLDPEDPAQGDWTTASGYRIGKELGQ  250
             DLGH  I H+AG   ++ AA R   WR  +  +   P++  +GD T+ SGYR + EL++
Sbjct  201  RDLGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELAR  260

Query  251  RAD--ITGIVAANDQMALGIMHALHELGRDVPGDISVVGFDDTEESSSFWPPLTTVHQDF  308
             +D   T+I A+ND MALG++ AL ELG   P+D+S+VGFDD   +  F P+LTT++QDF
Sbjct  261  SSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDF  320

Query  309  TEIGRRSMQVLLEMLDGREPSGDRIVPTSLVVRESAAAPRA  349
              +G  +++ LL  + G+EP   R +P +LVVR S+AAPR+
Sbjct  321  MTLGSSAIETLLSTMAGQEPV-RRQIPPTLVVRKSTAAPRP  360

56) AARI_33690 in NC_014550


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  186 bits (688),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 140/335 (42%), Positives = 214/335 (64%), Gaps = 4/335 (1%)

Query  16   NRPPSMADVAVMAGVSHQTVSRVLNDHPNVRARTREQVMDAIRQLGYRRNRAARELatas  75
             R+P+M DVA +AGVSH TVSRVLN+HP+VR+ TR +V  AI QLGYRRN  AR L +  
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  76   sstigiltigsEFFGPQSTVLGVEAAARAEGYFVTVTAMEDYDVHSSAKALSHLIDQGVD  135
            SSTIG++  GS ++     +LG+E++ARA GY + +++ ++      A  + +L DQ+V+
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  136  GVVVVASFNEVTDALDAAALKIPVVVVAARTDVPADDPAHYVYVDQRAGAHQAVNHLLEL  195
            GV V+A+ +   DAL      IP+ VV   ++  ++    +V +DQ  GA+ AV HL +L
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVV--MSGSVSNPRISFVELDQELGARLAVRHLRDL  203

Query  196  GHRKIAHVSGPTGWFDAAERKVGWLEAMAHFDDSPLEVPGGSWMSPGGYEAGKRLVEHVR  255
            GH +I+H++G    FDAA R  GW + +A     P ++  G   + +GY ++  L  +  
Sbjct  204  GHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMEL-ARSS  262

Query  256  SGEVTAVFAANDYLAIGLMRAFWEAGLKIPQDVSVIGFDDLQVAEYLIPTLSTVRQPFQE  315
             G  TA+FA+ND +A+G++ A+ E GL  P+DVS++GFDD+  A+ +IP+L+T+RQ F  
Sbjct  263  DGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMT  322

Query  316  IGRTALAELLEGKPGH-TLPKVIVPVLVVRDSTAA  349
            +G +A+  LL   +G+  + + I P LVVR STAA
Sbjct  323  LGSSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAA  357

57) lacI1 in NC_014215


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  185 bits (687),  Expect = 3e-48, Method: Compositional matrix adjust.
 Identities = 141/342 (42%), Positives = 226/342 (67%), Gaps = 13/342 (3%)

Query  4    GTAPNIRDVAELAGVSHQTVSRVINDHPSIQPQTRARVEAAIKTLGYRPNSAARSLARMR  63
            G AP + DVA++AGVSH TVSRV+N+HPS++P+TRARVEAAI  LGYR N+ AR+L   R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  64   TGRIGAIVDSPEHFGPMNTLRGVEVASRRAGYFLssvsvnddsvdAINQSLEFLLDQNVE  123
            ++ IG ++ ++  +     L G+E ++R AGY ++  S ++++   + + +  L DQ+VE
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  124  GLCLIAPRLPLLEVIRRRGLQIPSVVIATDTAHLVDDNGLQ-ASVDQELGTRMMVDYLLE  182
            G+ +IA+R   ++ +     +IP  V+ +++   V +  +    +DQELG+R+ V  L +
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGS---VSNPRISFVELDQELGARLAVRHLRD  202

Query  183  LGHTRIAHLSGPHDWGDARSRRATFEATLAAHGLTPAAIVEGDWSPDSGFAAGPGLIEGT  242
            LGH RI+HL+G  +  DA +R       LA     P  ++EGD +++SG+ ++  L  ++
Sbjct  203  LGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSS  262

Query  243  GA--TAVFSANDQMALGLVHYLSEVGLRVPDDVSVVGFDNTPESAHMIPPLTTVRQNFEK  300
            ++  TA+F++ND MALG++  L+E+GL  PDDVS+VGFD+ + + H IP+LTT+RQ+F  
Sbjct  263  DGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMT  322

Query  301  LGEMAIGSLLARIKGARVERETLRTQ--PSLVVR-SSAGPRP  339
            LG  AI +LL+ + G    +E +R Q  P+LVVR S+A+PRP
Sbjct  323  LGSSAIETLLSTMAG----QEPVRRQIPPTLVVRKSTAAPRP  360

58) Sros_4084 in NC_013595


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  185 bits (685),  Expect = 4e-48, Method: Compositional matrix adjust.
 Identities = 141/333 (43%), Positives = 216/333 (65%), Gaps = 7/333 (2%)

Query  15   RATVMEDVAERAGVSAMTVSRVLNTPEKVRPDTRARVLDAVRELSYRPNSAARSLVTGRS  74
            RA  M DVA+ AGVS +TVSRVLN    VRP+TRARV  A+ +L+YR N+ AR+L + RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  75   GVLGVVSFDTTLYGPASTLHGIEQAARSEDYLVTIVSVSALSRRSIGEAVDRLRFQSVDG  134
            + +GVV  ++ LY  +  L GIE +AR+ +Y + + S  + +   ++E V RL  QSV+G
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  135  VVIVAPHESAADGLRHLPPDLPAVVV--GARDDLPVPVAAVDQVTGAVRATKHLLSLGHR  192
            V ++A+++ A D+L ++ +D+P  VV  G+  +  ++   +DQ  GA  A +HL  LGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  193  TVWHVSGPQDWIDASGRIAGWRSVLEAEGREIPEPLL-GDWSARSGFEHGKRLARDPEV-  250
             + H++G  + +DA++R+ GWR  L   +  +P+ LL GD +A SG+  +  LAR ++  
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELAC-SPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  251  -TAVFVANDHMATGVLRALREAGRQVPQDVSVVGFDDVPEAAYLWPPLSTVRQNFTEVGR  309
             TA+F +ND MA GVL AL E G   P+DVS+VGFDD++ A  + P+L+T+RQ+F  +G 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  310  LSFQLLLDRIDGRAGAPHRMIEPELVVRESTAA  342
             +++ LL  + G+  + +R I P LVVR STAA
Sbjct  326  SAIETLLSTMAGQE-PVRRQIPPTLVVRKSTAA  357

59) Caci_4997 in NC_013131


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  184 bits (684),  Expect = 6e-48, Method: Compositional matrix adjust.
 Identities = 136/295 (47%), Positives = 196/295 (67%), Gaps = 4/295 (1%)

Query  40   SQTPTMADVALVAGVSHQTVSRVLNDQPNVRAETRARVVDAIRELGYRPNSAARQLVTRR  99
            +++P M DVA VAGVSH TVSRVLN++P+VR+ETRARV  AI +LGYR N+ AR L ++R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  100  SQTLGVISFDTTLYGPASMLYGIEQAARDADYFISIVSLRAMNRSSVLEAVDRLRDQAVE  159
            S T+GV+  ++ LY  + +L GIE +AR A+Y I++ S ++   S + E V RL DQ+VE
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  160  GIVVIAPQ--TSaagvlaqaaagvplvgagcgpaEQVPMAAIDQREGAAMATRHLLDLGH  217
            G+ VIA++  +  A     A   +++V +G  +  +++   +DQ  GA +A RHL DLGH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  218  RTVHHVAGPVGWFDATGRAEGWRAELEQADRPVPPPLRGDWSARSGYAAGRALAAEPD-L  276
              + H+AG    FDA++R +GWR EL  +       L GD +A SGY ++  LA  +D L
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  277  -TAVFCANDHMALGLLRAFHEAGRQVPAEVSVVGFDDIPESSYFTPPLSTVRQDF  330
             TA+F +ND MALG+L A+ E G   P +VS+VGFDDI+ +  F P+L+T+RQDF
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDF  320

60) MODMU_0250 in NC_017955


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  184 bits (683),  Expect = 6e-48, Method: Compositional matrix adjust.
 Identities = 141/315 (45%), Positives = 207/315 (66%), Gaps = 6/315 (1%)

Query  17   RALGMSDVAARAGVSHQTVSRVVNGHPNVAASTRERVLRAIAELGYRPNAAARALVTGSS  76
            RA GM DVA  AGVSH TVSRV+NGHP+V + TR RV  AIA+LGYR N+ ARAL +  S
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  77   RTIGLVTSHINQYGPAQTLLGLEQAARAAGYSLSVAILDDDSERAMREAVDRFVAQSVDA  136
             TIG+V +    Y  ++ LLG+E +ARAAGY +++A  ++++   + E V R+  QSV++
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  137  VVALSTYGQAVDALRRFTAPVPLIAVQVGRGEQHPTVWV--DQELGAELAVRHLLDLGHR  194
            V  +++   AVDAL    A +P+  V  G   +     V  DQELGA LAVRHL DLGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  195  TVHHVTGPVDSLEARGRVRGWRRALIEAGAPVPEP-VEGDWMasagyaagrrlaglrrqg  253
             + H++G  ++++A +RV+GWR  L   ++++P+  +EGD  A +GY ++  LA      
Sbjct  207  RITHLAGNFETFDAAARVQGWRDEL-ACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  254  aDVTAVFLANDQMALGLLNALTEEGVHVPRDISVVGFDDVPEAAYYSPPLTTVRQDFAEL  313
            +  TA+F +ND MALG+L AL+E G+  P D+S+VGFDD++ A  + P+LTT+RQDF  L
Sbjct  266  P--TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTL  323

Query  314  GRRGVQLVLCRLHGE  328
            G  +++ +L  + G+
Sbjct  324  GSSAIETLLSTMAGQ  338

61) CMS_2671 in NC_010407


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  184 bits (683),  Expect = 6e-48, Method: Compositional matrix adjust.
 Identities = 138/335 (42%), Positives = 211/335 (63%), Gaps = 5/335 (1%)

Query  29   GRTVSMADVAAHADVSAQTVSRVSNGAQNVEATTRQRVMDAMAELGYRPNSAARALKTGR  88
            GR+ +M DVA  A+VS  TVSRV NG  +V + TR RV  A+A+LGYR N+ ARALK+ R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  89   FRSIGIIMFTLSTLGNMRTLDAIVTAASGAGYTITLMPVPHPTEGEVAGAFSRLQEEAVD  148
              +IG++M   +     R L +I T+A +AGY I L +    + +++A    RL +++V+
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  149  GVVIIIEAHM-LDRADviipvglpvviiDSDAGDP-FVVVDTDQEQGTRLVTQHLLDLGH  206
            GV +I   ++ +D    +++     V++ +  ++P +  V+ DQE G+RL  +HL DLGH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  207  TAIVHVAGPSTSYSAARRAAEWRATMLDAGLEPEDPAQGDWTTASGYRIGRELGQRAD--  264
              I H+AG   ++ AA R   WR  +  +   P++  +GD T+ SGYR + EL++ +D  
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  265  ITGIVAANDQMALGIMHALHELGRDVPGDVSVVGFDDTEESSSFWPPLTTVHQDFTEIGR  324
             T+I A+ND MALG++ AL ELG   P+DVS+VGFDD   +  F P+LTT++QDF  +G 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  325  RSMQVLLEMLDGREPSGDRMVPTRLVVRQSAAAPR  359
             +++ LL  + G+EP   R +P  LVVR+S+AAPR
Sbjct  326  SAIETLLSTMAGQEPV-RRQIPPTLVVRKSTAAPR  359

62) Asphe3_10660 in NC_015145


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  184 bits (682),  Expect = 7e-48, Method: Compositional matrix adjust.
 Identities = 136/330 (42%), Positives = 210/330 (64%), Gaps = 5/330 (1%)

Query  21   ITDVAKIAGVSYGTVSRVLNNAPDVNAATRERVLQVIKDIGYRRNRAATTLVTSRSTSIG  80
            + DVA++AGVS  TVSRVLN  P V + TR RV   I ++GYRRN  A +L + RS++IG
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  81   ILTDGSPRFGPVGTLMALENTARKKGYSTTVVTVEEPYEDSVQKALDTLddigvdgiivi  140
            ++  GS  +     L+++E TAR  GY   + + +      +   +  L D +V+G+ VI
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  141  APIvsmasavwsasvrvpvEMIAAGASATPNVFTYSE-NQELGARLATEHLIELGHTDIA  199
            A+      A+      +P+ ++ +G+ + P + ++ E +QELGARLA  HL +LGH  I+
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNPRI-SFVELDQELGARLAVRHLRDLGHERIT  209

Query  200  HLAGSSDWFDGRVRKRGWEAALR-DAGLPPGLCLEGDWSPKWAYETGLRLVEEGN-VPQA  257
            HLAG+ + FD+  R +GW   L   ++LP  L LEGD ++  +Y  ++ L   ++ +P A
Sbjct  210  HLAGNFETFDAAARVQGWRDELACSPSLPQQL-LEGDFTAESGYRGAMELARSSDGLPTA  268

Query  258  IVAASDHTALGAIRAFAEKGVRVPEDVSIVGFDDIEGSDYFLPPLTTVRQDFSTLADASI  317
            I A++D  ALG + A+AE G+  P+DVS+VGFDDI G+D F+P+LTT+RQDF TL+ ++I
Sbjct  269  IFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAI  328

Query  318  EVLLGAIDGRAVDRAPSPPTLVVRMSSAPA  347
            E LL+++ G+   R   PPTLVVR S+A++
Sbjct  329  ETLLSTMAGQEPVRRQIPPTLVVRKSTAAP  358

63) SVEN_6727 in NC_018750


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  183 bits (677),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 140/336 (42%), Positives = 219/336 (66%), Gaps = 9/336 (2%)

Query  9    RPPTMADVAREAGVSHQTVSRVLSDHPNVRAATREQVTLAIERLGYRRNSaaralvtrrt  68
            R+P M DVA+ AGVSH TVSRVL++HP+VR+ TR +V  AI +LGYRRN+ ARAL ++R+
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  69   rtlGVIAVNTALYGPASTLTGLEEAAREQGYLVSTVSLRTGEGQGLKDAIDHLASWGVEG  128
             T+GV+   ++LY  +  L G+E +AR  GY ++  S + G + +L + + +L+  +VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  129  VVAITPQRSHVQALAEL--DAPFPVVTVEGGHQLDLPGVSLDQELGARMVTEHLLAAGHG  186
            V  I++++  V+AL+++  D P +VV   +  +  ++ V LDQELGAR+   HL   GH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  187  NVWHVAGPDDWLESEARTAGWRTVLEESGIRPPRVLTGDWSPLSGYragqelaglalarr  246
             + H+AG  + +++ AR  GWR  L  S   P ++L GD ++ SGYR++ ELA  + +  
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  247  gaTPVTAVFVANDQMALGVLRALREGGIRTPGQVAVAGFDDIPEAEFFPPPLTTVRQDFA  306
                 TA+F +ND MALGVL AL E G+ +P++V++ GFDDI+ A+ F P+LTT+RQDF 
Sbjct  267  -----TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFM  321

Query  307  AIGRRSIGLLVDHIEGRARKAEHLLVEPQLIMRAST  342
            ++G  +I  L+  + G+     +  + P L++R ST
Sbjct  322  TLGSSAIETLLSTMAGQEPVRRQ--IPPTLVVRKST  355

64) XNR_3314 in NC_020990


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  183 bits (677),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 137/337 (41%), Positives = 216/337 (65%), Gaps = 8/337 (2%)

Query  7    VSRPPTMADVAREAGVSHQTVSRVLSGHPHVRPATRAQVTAAVDRLGYRRNPaaralvtr  66
            ++R+P M DVA+ AGVSH TVSRVL+GHP VRP TRA+V AA+ +LGYRRN  ARAL ++
Sbjct  25   MGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSK  84

Query  67   rtrtlGVIAVNTTLYGPASTMAGLHEAARDEGYLVSAVTLRGDGRQGLKDAVDHLSSWGV  126
            R+ T+GV+   + LY  +  + G++ +AR  GY ++  + +G++  +L + V +L+  +V
Sbjct  85   RSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSV  144

Query  127  EGVVALTPQRTTGQALARL--DAPFPVVSVEGGDQLGLPAVSLDQERGARMVTEHLLAAG  184
            EGV  +++++ + +AL+ +  D P +VV   +  +  ++ V LDQE GAR+   HL   G
Sbjct  145  EGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLG  204

Query  185  HATVWHVAGPDGWSESEARTAGWRAVLRERGIAAPPPLQGDWSPLSGYRAGQELAGHVLS  244
            H  + H+AG     ++ AR  GWR  L      +   L+GD ++ SGYR++ ELA     
Sbjct  205  HERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELA----R  260

Query  245  GRGPGVTAVFVANDQMALGVLRALREAGVRTPERVAVAGFDDIPEAEFFPPPLTTVRQDF  304
            + +   TA+F +ND MALGVL AL E G+ +P+ V++ GFDDI+ A+ F P+LTT+RQDF
Sbjct  261  SSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDF  320

Query  305  GSIGRRSIRLLIDHIEGRASGAQHVLVEPQLIVRGST  341
             ++G  +I  L+  + G+ +  ++  + P L+VR ST
Sbjct  321  MTLGSSAIETLLSTMAGQEPVRRQ--IPPTLVVRKST  355

65) SACTE_0371 in NC_015953


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  179 bits (665),  Expect = 1e-46, Method: Compositional matrix adjust.
 Identities = 144/340 (43%), Positives = 213/340 (63%), Gaps = 19/340 (5%)

Query  7    REASMADVARLAGVSSQTVSRVSNGHSMVSEETRRRVLSAMKELNYRPNSAARALKSGRF  66
            R ++M DVA++AGVS  TVSRV NGH+ V  ETR RV +A+ +L YR N+ ARALKS R 
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  67   RTLGVV-----LFTLATTGNVRTLEAISASAADEGYAITLLPVATPTSTGVRGAVTVLGE  121
             T+GVV     L+ L+     R L +I ++A   GY I L +    +++++   V  L +
Sbjct  87   STIGVVMAGSGLYELP-----RVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTD  141

Query  122  QVVDGMIVI----MEVHLLDAAISLPPNTHVVVADSDAGDRYSVVDTDQSGGARAAVQHL  177
            Q V+G+ VI    + V+ L   ++  P + VV+++S +  R S V+ DQ  GAR AV+HL
Sbjct  142  QSVEGVAVIAARQVAVDALSDVVADIPMS-VVMSGSVSNPRISFVELDQELGARLAVRHL  200

Query  178  LDLGHHTVAHVAGPAESFAAQRRAVAWRQTLEEAGRPVPPPVDGDWSAVSGYEAGLTLA-  236
             DLGH+ ++H+AG  E+F A  R  +WR+ L  +       ++GD +A SGY +++ LA 
Sbjct  201  RDLGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELAR  260

Query  237  -ADPSVTAVFAANDQMALGVLRALHERGRRVPEDVSVVGFDDIADSASFFPPLTTVHQDF  295
             +D   TA+FA+ND MALGVL AL E G   P+DVS+VGFDDIA++  F+P+LTT++QDF
Sbjct  261  SSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDF  320

Query  296  AEIGRLCVDGVLRQIRNEAAERGTTLVPTRLVVRSSTAPP  335
              +G   ++ +L  +  + + R    +P  LVVR STA+P
Sbjct  321  MTLGSSAIETLLSTMAGQEPVR--RQIPPTLVVRKSTAAP  358

66) Sfla_5907 in NC_016114


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  179 bits (662),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 144/341 (43%), Positives = 211/341 (62%), Gaps = 21/341 (6%)

Query  7    KEASMADVARLAGVSSQTVSRVSNGHPIVSEDTRERVLAAMKDLNYRPNSAARALKSGKF  66
            + ++M DVA++AGVS  TVSRV NGHP V  +TR RV AA+ +L YR N+ ARALKS + 
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  67   RTLGVI-----LFTLATTGNVRTLEAISASAADEGYAITLLPVATPTSTSVRGAVTLLGE  121
             T+GV+     L+ L+     R L +I ++A   GY I L +    +++ +   V  L +
Sbjct  87   STIGVVMAGSGLYELP-----RVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTD  141

Query  122  QVVDGIIVI----MEVRLLDAAISLPPHTHVVVADSDAGDRYSVVDTDQSGGAEAAVQHL  177
            Q V+G+ VI    + V  L   ++  P + VV+++S +  R S V+ DQ  GA  AV+HL
Sbjct  142  QSVEGVAVIAARQVAVDALSDVVADIPMS-VVMSGSVSNPRISFVELDQELGARLAVRHL  200

Query  178  LDLGHRTVVHVAGPPESFAAQRRAHAWRRTLEKAGRPVPAQ-VDGDWSAASGYTAGLALA  236
             DLGH  + H+AG  E+F A  R ++WR  L   + ++P Q ++GD +A SGY +++ LA
Sbjct  201  RDLGHERITHLAGNFETFDAAARVQGWRDELA-CSPSLPQQLLEGDFTAESGYRGAMELA  259

Query  237  --ADPTCTAIFAANDQMALGVLRALHEKGRRVPEDVSVVGFDDIADSASFLPPLTTVHQD  294
              +D   TAIFA+ND MALGVL AL E G   P+DVS+VGFDDIA++  F+P+LTT++QD
Sbjct  260  RSSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQD  319

Query  295  FAEVGRLCVDGVLRQIREETTERGTTLVPTRLVVRSSTAPP  335
            F  +G   ++ +L  +  +   R    +P  LVVR STA+P
Sbjct  320  FMTLGSSAIETLLSTMAGQEPVR--RQIPPTLVVRKSTAAP  358

67) SC6D11.07 in NC_003888


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  179 bits (663),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 141/337 (42%), Positives = 208/337 (62%), Gaps = 10/337 (2%)

Query  20   DRTASMADVARLAGVSSQTVSRVSNGYAGVTEETRQQVLAAMKELGYRPNSAARALKRGE  79
            +R+++M DVA++AGVS  TVSRV NG ++V  ETR +V AA+ +LGYR N+ ARALK   
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  80   FRTIGVITFTLATTGNVRTLEAIATSAASEGYAVTLLPVAVPTQDEVRGAFSRLEELAVD  139
              TIGV+    +     R L +I T+A + GY + L +    +  ++     RL + +V+
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  140  AVIVI----MEVHLLDAASLKLPPHVQVVVVDSDAGDTYTVVDTDQAGGSRAAVRHLLDL  195
            +V VI    + V+ L      +P  + VV+ +S +    + V+ DQ  G+R AVRHL DL
Sbjct  146  GVAVIAARQVAVDALSDVVADIP--MSVVMSGSVSNPRISFVELDQELGARLAVRHLRDL  203

Query  196  GHDTVWHLGGPEGSFAAQRRTDAWRRTLTEAGRTPPPLVRGDWSAESGYRAGLELAARED  255
            GH+ + HL+G   +F A  R ++WR  L+ +   P  L+ GD +AESGYR+++ELA   D
Sbjct  204  GHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSD  263

Query  256  --CTAVFAANDQMALGLLRALHERGRRVPEDISVIGFDDIAEAGSFLPPLTTVHQDFAEV  313
               TA+FA+ND MALG+L AL E G   P+D+S++GFDDIA A+ F+P+LTT++QDF  +
Sbjct  264  GLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTL  323

Query  314  GRLCVRAVLRKMRAAGPEQGTTLVPTRLVTRASTAPP  350
            G   + ++L  M  AG E     +P  LV R STA+P
Sbjct  324  GSSAIETLLSTM--AGQEPVRRQIPPTLVVRKSTAAP  358

68) SBI_06430 in NC_016582


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  179 bits (662),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 138/334 (42%), Positives = 212/334 (64%), Gaps = 5/334 (1%)

Query  10   RPPVLGDVARLAQVSVMTVSRVLNESPGVKASTRARVLAAVAELGYRPNSAARTLVTGMS  69
            R+P + DVA++A VS +TVSRVLN  P+V++ TRARV AA+A+LGYR N+ AR+L +  S
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  70   RVLGVVAFDTRLYGPATTLFGIEQAARDADYTVRVTTLESTGQNSGGEVMRSLMSESLAG  129
              +GVV  ++ LY  +  L+GIE +AR A+Y + +++ ++ + +  +E++R L  +S+ G
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  130  VILSAPHDWAAEALRHLSRNTPvvvvdvdvEQDS-APVVGIAQHAGARQATEHLLSLGHK  188
            V + A+++ A +AL ++  + P+ VV  +   ++  + V + Q+ GAR A  HL  LGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  189  TVWHVSGPVTWPSARAREAAWHTTLTEAGRMAPPPLRGDWTARSGYEQGKRLVRRKNV--  246
             + H++G      A AR  +W+  L+ +  ++   L GD TA SGY  +  L R  +   
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  247  TAVFAANDQMALGVLLALREAGLDVPGDVSLVGFDDIPEAAYFWPPLTTVRQDFDEAGRL  306
            TA+FA+ND MALGVL AL E GL  P+DVSLVGFDDI+ A  F P+LTT+RQDF   G  
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  307  ALDLLMDQIEGTGARDRLTVVQPKLVVRGSTGPA  340
            A++ L+  + G  +  R   + P LVVR ST+++
Sbjct  327  AIETLLSTMAGQEPVRR--QIPPTLVVRKSTAAP  358

69) MTES_2070 in NC_015125


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  177 bits (657),  Expect = 6e-46, Method: Compositional matrix adjust.
 Identities = 136/328 (42%), Positives = 209/328 (64%), Gaps = 11/328 (3%)

Query  4    SMADVAERAGVSAQTVSRVANGSPRVDPATRARVEKAMADLGYRMHRAARALRTGQTSTI  63
            +M DVA+ AGVS  TVSRV NG P V P TRARVE A+A+LGYR +  ARAL++ ++STI
Sbjct  30   GMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTI  89

Query  64   GLVVSTLASVGNSRMLQAISEaaaardyalaVVT---VGERGIREAFARLRSQGVDGAVV  120
            G+V++  +    +R+L +I  +A A +Y + + +    +  ++ E   RL  Q+V+G  V
Sbjct  90   GVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAV  149

Query  121  LNE---ATELARDAQPPADLHLVVVDSPADPRFSIVQTDHAAGARAATTHLLALGCGTVH  177
            +     A +   D  +   + +V+ +S ++PR+S+V+ D+  GAR A  HL  LG   + 
Sbjct  150  IAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERIT  209

Query  178  HLAGPAGSFAAVERERGWRAALADAGVAAPEPVRGDWTSASGYRAARALVGAS-----AV  232
            HLAG   +F A  R +GWR  LA +   + + + GD T+ SGYR+A  L  +S     A+
Sbjct  210  HLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAI  269

Query  233  FVANDQMALGALRAFADAGRRVPDDVAVVGFDDIVDAAEYRPPLTTVRQDFDALGRRAVA  292
            F +ND MALG L A+A+ G   PDDV++VGFDDI +A ++ P+LTT+RQDF +LG  A+ 
Sbjct  270  FAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIE  329

Query  293  ALIAAIEGGDAVAETVPAALVVRASSAA  320
            +L++++ G ++V   +P++LVVR S+AA
Sbjct  330  TLLSTMAGQEPVRRQIPPTLVVRKSTAA  357

70) Caci_4716 in NC_013131


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  177 bits (657),  Expect = 7e-46, Method: Compositional matrix adjust.
 Identities = 144/347 (42%), Positives = 227/347 (66%), Gaps = 11/347 (3%)

Query  3    RERVRAGETVRGGGRPGLRDVAELAGVSHQTVSRVFKDHPRVSAETRAKVLAAAAQLDFR  62
            RE  R G  V G + PG+ DVA++AGVSH TVSRV+++HP V +ETRA+V AA AQL++R
Sbjct  15   REPSRVGVQVMGRA-PGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYR  73

Query  63   PNAIARALATGSSRTIGVVSFDTTLFGPASMVSAIESSARDADYFVSVVGLASPSRRSVA  122
             N++ARAL +  S TIGVV  ++ L+  + ++ +IE++AR A+Y +++ +  + +   +A
Sbjct  74   RNTVARALKSKRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLA  133

Query  123  EAADRMRGQGVDGIILIPGHVPADQVVRHLPAMLPV-VSLSAAETVASASVDQYDGPLA-  180
            E   R+ +Q+V+G+ +I+++  A + + ++ A +P+ V +S++ + +  S  + D  L+ 
Sbjct  134  EMVRRLTDQSVEGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGA  193

Query  181  --AVRHLLDLGHRTVHHVAGPADWLDARQREQAWRDALTAAGAPVPEPLPGDWSAASGYE  238
              AVRHL DLGH  + H+AG  + +DA  R Q+WRD L+ + +   + L GD +A SGY 
Sbjct  194  RLAVRHLRDLGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYR  253

Query  239  RGQVLA--ADPRVSAVFAANDHIALGVLLALHEARRRVPEEVSVIGFDDIPEAAFFTPPL  296
             +  LA  +D   +A+FA+ND +ALGVL AL E     P++VS++GFDDI+ A  F P+L
Sbjct  254  GAMELARSSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPAL  313

Query  297  TTVRQDFSALGRRSMALLLDQIGasapaaspvaavIPTELVVRRSTA  343
            TT+RQDF +LG  ++  LL  ++    +  PV   IP  LVVR+STA
Sbjct  314  TTIRQDFMTLGSSAIETLLSTMA----GQEPVRRQIPPTLVVRKSTA  356

71) F750_0665 in NC_021055


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  177 bits (656),  Expect = 8e-46, Method: Compositional matrix adjust.
 Identities = 145/340 (43%), Positives = 210/340 (62%), Gaps = 22/340 (6%)

Query  1    MADVARLAGVSSQTVSRVSNGHPIVSEDTRERVLAAMKDLNYRPNSAARALKSGKFRTLG  60
            M DVA++AGVS  TVSRV NGHP V  +TR RV AA+ +L YR N+ ARALKS +  T+G
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  61   VI-----LFTLATTGNVRTLEAISASAADEGYAITLLPVATPTSTSVRGAVTLLGEQVVD  115
            V+     L+ L+     R L +I ++A   GY I L +    +++ +   V  L +Q V+
Sbjct  91   VVMAGSGLYELP-----RVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  116  GIIVI----MEVRLLDAAISLPPHTHVVVADSDAGDRYSVVDTDQSGGAEAAVQHLLDLG  171
            G+ VI    + V  L   ++  P + VV+++S +  R S V+ DQ  GA  AV+HL DLG
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMS-VVMSGSVSNPRISFVELDQELGARLAVRHLRDLG  204

Query  172  HRTVVHVAGPPESFAAQRRAHAWRRTLEKAGRPVPAQ-VDGDWSAASGYTAGLALA--AD  228
            H  + H+AG  E+F A  R ++WR  L   + ++P Q ++GD +A SGY +++ LA  +D
Sbjct  205  HERITHLAGNFETFDAAARVQGWRDELA-CSPSLPQQLLEGDFTAESGYRGAMELARSSD  263

Query  229  PTCTAIFAANDQMALGVLRALHEKGRRVPEDVSVVGFDDIPDSASFLPPLTTVHQDFAEV  288
               TAIFA+ND MALGVL AL E G   P+DVS+VGFDDI+++  F+P+LTT++QDF  +
Sbjct  264  GLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTL  323

Query  289  GRLCVDGVLRQIREETTERGTTLVPTRLVVRSSTAPP-PH  327
            G   ++ +L  +  +   R    +P  LVVR STA+P PH
Sbjct  324  GSSAIETLLSTMAGQEPVR--RQIPPTLVVRKSTAAPRPH  361

72) Celf_0869 in NC_015514


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  176 bits (650),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 157/360 (44%), Positives = 244/360 (68%), Gaps = 6/360 (1%)

Query  1    MGDEHGADGTATSRPAAARNGT--TARPPAMSDVAARAGVSHQTVSRVLNDHPSVRPATR  58
            M    ++ GT + +  ++R G    +R+P+M DVA  AGVSH TVSRVLN+HPSVRP TR
Sbjct  1    MPSTSSSCGTISEQREPSRVGVQVMGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETR  60

Query  59   DRVLAAIAELGYRRNSaaralvtrrtgtvgvvtpatalYGPTSTMVGVEEAARVAGWFVS  118
             RV AAIA+LGYRRN+ ARAL ++R++T+GVV ++++LY     ++G+E +AR AG  ++
Sbjct  61   ARVEAAIAQLGYRRNTVARALKSKRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEIN  120

Query  119  VATMRQFDGDAMHRAFEHFLGQGVDGVAIIAPTVQAVDvlaaldspvpvvvvssaadvps  178
            +A+ +   +  +     ++ +Q+V+GVA+IA+   AVD L+ + + +P+ VV S++   +
Sbjct  121  LASWQGGAASDLAEMVRRLTDQSVEGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNP  180

Query  179  vpHLHAVGVDQQQGARLATAHLLGEGRTGVLHVAGPQDWFDAQDRLVGWRAECaaagvpa  238
              ++  V +DQ+ GARLA  HL + G+  + H+AG  + FDA  R+ GWR E A +   +
Sbjct  181  --RISFVELDQELGARLAVRHLRDLGHERITHLAGNFETFDAAARVQGWRDELACSPSLP  238

Query  239  ddpvvvgwaaSDGYAVGRRLVR--EGLPDAVFAANDQLALGLLHAFWEAGVRVPEDVALV  296
            ++ +  + +A  GY  +  L R  +GLP A+FA+ND +ALG+L A+ E G+  P+DV+LV
Sbjct  239  QQLLEGDFTAESGYRGAMELARSSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLV  298

Query  297  GFDDEVGSAHYVPPLTTVRQDFTALGVLAIDTLDAAMAGADPGHRLIPAELVVRASSVRP  356
            GFDD  G+ H++P+LTT+RQDF +LG  AI+TL ++MAG +P +R IP+ LVVR S+  P
Sbjct  299  GFDDIAGADHFIPALTTIRQDFMTLGSSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAP  358

73) SBI_02202 in NC_016582


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  176 bits (652),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 140/335 (42%), Positives = 206/335 (62%), Gaps = 13/335 (3%)

Query  30   ASMADVARLAGVSSQTVSRVSNGYSGVTEETRQQVLAAMKELGYRPNSAARALKRGEFRT  89
            ++M DVA++AGVS  TVSRV NG ++V  ETR +V AA+ +LGYR N+ ARALK     T
Sbjct  29   PGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSST  88

Query  90   IGVITFSLATTGNVRTLEAIATSAAHEGYAVTLLPVAVPTQDEVRGAFSRLGELAVDAVI  149
            IGV+  + +     R L +I T+A   GY + L +    +  ++     RL + +V++V 
Sbjct  89   IGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVA  148

Query  150  VI----MEVHLLDAATVSLPPGVQVVVADSDAGDRYSVVDTDQAGGTRAAVRHLLDLGHR  205
            VI    + V+ L      +P  + VV+++S +  R S V+ DQ  G+R AVRHL DLGH 
Sbjct  149  VIAARQVAVDALSDVVADIP--MSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  206  TVWHLAGPQESFAAQRRADAWRVTLTDAGCAPPPLVRGDWSAESGYQAGLRLADEAD--C  263
             + HLAG  E+F A  R ++WR  L+ +   P  L+ GD +AESGY++++ LA  +D   
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP  266

Query  264  SAVFAANDQMALGLLRALHERGRRVPEDVSVIGFDDIPEAGSFLPPLTTVHQDFAEVGRR  323
            +A+FA+ND MALG+L AL E G   P+DVS++GFDDI+ A+ F+P+LTT++QDF  +G  
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  324  CVEGVLRQMREDGEEMTEPGTTLVPTRLVMRGSTA  358
             +E +L  M  +     EP    +P  LV+R STA
Sbjct  327  AIETLLSTMAGQ-----EPVRRQIPPTLVVRKSTA  356

74) Cfla_3042 in NC_014151


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  174 bits (644),  Expect = 8e-45, Method: Compositional matrix adjust.
 Identities = 148/335 (45%), Positives = 222/335 (67%), Gaps = 7/335 (2%)

Query  18   ITDVASAAGVSYQTVSRVINDHPNVATETRERVLDAMQRLGYRRNIAARALKTRRTGVFG  77
            + DVA  AGVS  TVSRV+N+HP+V  ETR RV  A+ +LGYRRN  ARALK++R++ +G
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  78   VVSSGSHLFGPTRTLVAIEQAARAKGLFVSLATVDLQRKDEVAAAIEHLLDQGVDGIVVV  137
            VV +GS L+   R L++IE +ARA G  ++LA+ +     ++A  + +L DQ+V+G+ V+
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  138  ASHDEAAAAVLESATQVP--VVVAGRTGREHALAVAIDQEAGAKVATKHLLDLGHRDILH  195
            A+++ A  A+ +  +++P  VV++G  +  +   V +DQE GA++A +HL DLGH  I H
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITH  210

Query  196  LAGPAPWVDARARAVGFRETMAAAGLAPRTLWADDWSAEVGYLAGQELvarvrrrrsvLP  255
            LAG     DA AR  G R+ +A +   P+ L  +D +AE GY ++ EL     R    LP
Sbjct  211  LAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMEL----ARSSDGLP  266

Query  256  TAIFAANDLLALGMMHALADARLKVPddvsvvgyddgdgsAHFVPPLTTVAQELEELGYR  315
            TAIFA+NDL+ALG++ ALA+  L  PDDVS+VG+DD  G+ HF+P+LTT+ Q++  LG  
Sbjct  267  TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSS  326

Query  316  CVELLLAAHDGVATsssvsvsPRLLVRESTAPPRS  350
             +E LL++  G   +    ++P L+VR STA+PR+
Sbjct  327  AIETLLSTMAG-QEPVRRQIPPTLVVRKSTAAPRP  360

75) L083_4358 in NC_021191


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  173 bits (640),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 137/335 (41%), Positives = 206/335 (62%), Gaps = 6/335 (1%)

Query  9    ARRVSMADVARAAGVSAQTVSRVANGHPSVVESTRTEVLAAMARLGYRPNSAARALKRGE  68
            +R  +M DVA+ AGVS  TVSRV NGHPSV   TR+ V AA+A+LGYR N+ ARALK   
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  69   FRTLGVILFTLATTGNSRTVEAIASHAAQEGYAITLIPVAMPTQDGVLGAFTRLGELAVD  128
              T+GV++   +    +R + +I + A   GY I L +    +  ++     RL + +V+
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  129  GIVVIMEVHLLDAANLELPPNVPLIVV--DSDAGERYPVVDTDQADGARQATRHLLDLGH  186
            G+ VI   ++   A  ++ +++P+ VV  +S +  R + V+ DQ  GAR A RHL DLGH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  187  RTVRHVSGPTGSFAAGRRMAAWQQTLEAAGRPVPPPQHGDWSAESGYRAGLVLAAEPD--  244
              + H++G   +F A+ R+ +W++ L  +        +GD +AESGYR+++ LA  +D  
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  245  CTAVFAANDQMALGVMRALHEAGKQIPGDVSVVGFDDIPEANAFYPPLTTVHQDFAEIGR  304
             TA+FA+ND MALGV+ AL E G   P+DVS+VGFDDI+ A+ F P+LTT++QDF  +G 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  305  RCVDGLLHQIRHEPGHPGTDLVPTRLVIRGSTAAP  339
              ++ LL  +  +  +P    +P  LV+R STAAP
Sbjct  326  SAIETLLSTMAGQ--EPVRRQIPPTLVVRKSTAAP  358

76) L083_3772 in NC_021191


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  171 bits (633),  Expect = 5e-44, Method: Compositional matrix adjust.
 Identities = 127/306 (42%), Positives = 197/306 (65%), Gaps = 3/306 (0%)

Query  1    MRDVAKLAGVSHQTVSRVLNEHPHVRQETRARVLEAMRSLNYRRNLAARTLVTRQSNTLG  60
            M DVA++AGVSH TVSRVLN HP VR ETRARV  A+  L YRRN  AR+L +++S+T+G
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  61   IVGFETTLFGPASMLYGIESAAREAGYLVSIATVRNLERADVLGAADRLAEHAVDGIIAI  120
            +V   + L+  + +L GIE++AR AGY +++A+ +    +D+     RL++++V+G+  I
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  121  APKTAVTSALMQAPANL-YCvavggagdaeavPTVRIDNALGARLATQHLLDLGHRTVHH  179
            A++     AL +  A++   V ++G+     ++ V +D+ LGARLA +HL DLGH  + H
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITH  210

Query  180  AAGPGDWPEAHERIEGWRNTLYDADAVVPPVHPQWWDAASGYEQGRALAADPGV--TAIF  237
             AG  +  +A  R++GWR+ L  + ++   +      A SGY  +  LA  ++   TAIF
Sbjct  211  LAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAIF  270

Query  238  CANDRIALGVLRALHEAGRRVPEEVSVVGFDDMPDSGFFLPPLTTVSQDFGELGRRSLAL  297
             +ND +ALGVL AL E G   P++VS+VGFDD+++++ F+P+LTT+ QDF  LG  ++  
Sbjct  271  AGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIET  330

Query  298  LLEHMN  303
            LL  M 
Sbjct  331  LLSTMA  336

77) Asphe3_34750 in NC_015145


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  170 bits (629),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 139/335 (42%), Positives = 202/335 (61%), Gaps = 10/335 (2%)

Query  1    MSDVARLAGVSQQTVSRVVRGATNVDPDIRQRVEHAIAQLRYRRNPAAAALASNRTMTIG  60
            M DVA++AGVS+ TVSRV+ G  +V P+ R RVE AIAQL YRRN  A AL S+R+ TIG
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  61   VVSFELSVLGPTVALYGISEEARQHGYATRLVTLASLERRDIRAAFESINSDTVDGVIVL  120
            VV    ++      L GI   AR  GY   L +  +    D+      +  ++V+GV V+
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  121  APLLDAITVLEDL--DIGVPVVTFQQGSHPSPTSVSVDEVRGARMVVRHLLDLGHETVWH  178
            A+   A+  L D+  DI ++VV     S+P  + V +D+  GAR+ VRHL DLGHE + H
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITH  210

Query  179  VQGPPGWMATSARVQGWAEELGAAGRIVPTPLATVDWSAAEGYRVGRELAARKDV--TAV  236
            + G      ++ARVQGW +EL+ +  + P  L   D +A  GYR + ELA   D   TA+
Sbjct  211  LAGNFETFDAAARVQGWRDELACSPSL-PQQLLEGDFTAESGYRGAMELARSSDGLPTAI  269

Query  237  FAANDPFALGVIKAMDDAGRNVPGDVSVVGFDDVKEAPFFRPALTTVKLDFEAIGHIAVS  296
            FA+ND  ALGV+ A+ + G + P+DVS+VGFDD+  A  F PALTT++ DF ++G  A+ 
Sbjct  270  FAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIE  329

Query  297  RILAMIKEEAEG--DIPLLEPRLILRDTTAAPHSQ  329
             +L+ +  +     +IP   P L++R +TAAP+++
Sbjct  330  TLLSTMAGQEPVRRQIP---PTLVVRKSTAAPRPH  361

78) MTES_2906 in NC_015125


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  170 bits (627),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 141/339 (42%), Positives = 223/339 (66%), Gaps = 10/339 (2%)

Query  8    DATGRAPSIRDVARLAGVSYQTVSRVINNSPQLRPETAARVRSAIAELKFVPNQaarala  67
            +  GRAP++ DVA++AGVS  TVSRV+N  P +RPET ARV +AIA+L +  N  ARAL 
Sbjct  23   QVMGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALK  82

Query  68   tsrsrlIGVLGPRATTFGVATMIQAVESAARAAGYRLTVTSLVTSAPDDVRASIDHLMQQ  127
            + RS  IGV+ + +  + ++ ++ ++E++ARAAGY + ++S   +A+ D+   + +L +Q
Sbjct  83   SKRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQ  142

Query  128  SVEGLIAVAPQTRVVPILDELQLPVPVQIVSSTGSTA---SFN--DQIAGARAAVRHLID  182
            SVEG+  +A++   V  L ++   +P+ +V S + +    SF   DQ  GAR AVRHL D
Sbjct  143  SVEGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRD  202

Query  183  LGHNRILHIAGPRDWIEADHRMRGYLAEMDANDLSPRPPVLGDWTAQFGYEAGLELLRTE  242
            LGH+RI H+AG  + ++A  R++G   E+  +   P+  + GD TA+ GY +++EL R+ 
Sbjct  203  LGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSS  262

Query  243  DA--TAVFAGNDHMALGFMHAVRDIGRSVPDDIAVVGFDDVPESAHLWPPLTTVRQDFFG  300
            D+  TA+FAGND MALG + A+ ++G S PDD+++VGFDD++ + H+ P+LTT+RQDF  
Sbjct  263  DGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMT  322

Query  301  IGRRAVWDLLRAVGETGGEEVAPEPDHLRLIVRSSTAPP  339
            +G  A+  LL ++   +G+E         L+VR STA+P
Sbjct  323  LGSSAIETLLSTM---AGQEPVRRQIPPTLVVRKSTAAP  358

79) FraEuI1c_3466 in NC_014666


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  168 bits (622),  Expect = 4e-43, Method: Compositional matrix adjust.
 Identities = 143/331 (44%), Positives = 211/331 (64%), Gaps = 14/331 (4%)

Query  1    MTDVARLAGVSHQTVSRVLNDHPNVKEQTRLRVRAAMEQLGYRPNRAARALVTGRSHVVG  60
            M DVA++AGVSH TVSRVLN+HP+V+ +TR RV AA+ QLGYR N  ARAL + RS  +G
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  61   IVAQNTALYGPTAVLTAVERAVSADGFAVGVASVPVLDRSSIVDAVTRLLEQRVAGIVVI  120
            +V   ++LY    VL ++E +  A G+ + +AS      S + + V RL +Q V G+ VI
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  121  APVRSANEA-lddvpddlplvvidgdpARPR-RLVTVDQRLGARLATQCLLAAGHETVWH  178
            A+ + A +A  D V+D    VV+ G  + PR  +V +DQ LGARLA + L   GHE + H
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITH  210

Query  179  VSGPPDWFDSAERVAGWRQALLDAGAEIP-PVITANWSLDSGYEAGQLLA----GIPRAR  233
            ++G  + FD+A RV GWR+  L  ++ +P  ++ ++ + +SGY ++  LA    G+P   
Sbjct  211  LAGNFETFDAAARVQGWRDE-LACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP--T  267

Query  234  AVFAANDHLALGIMKALREAGRSVPRDVSVVGFDDIPEAGYVSPALTTVRPDFEAVAAQA  293
            A+FA+ND +ALG++ AL E G S P DVS+VGFDDI+ A+   PALTT+R DF ++++ A
Sbjct  268  AIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSA  327

Query  294  VHLLRAQMDDPPAGGLPRLAPIPPCLVERES  324
            ++ L + M +  +  + R   IPP LV R S
Sbjct  328  IETLLSTMAGQEP--VRR--QIPPTLVVRKS  354

80) CMM_0875 in NC_009480


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  167 bits (616),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 143/334 (43%), Positives = 219/334 (66%), Gaps = 5/334 (1%)

Query  9    GRAPSIRDVARLAGVSHQTVSRVLNDSPSLRAETRQRVLDVMEQVQYRPNRAARALVTSR  68
            GRAP++ DVA++AGVSH TVSRVLN+ PS+R+ETR RV   + Q+ YR N  ARAL + R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  69   SRTIGVLTAQSSQYGPassiaaieaaareaGYLVTTTNLAADDEAAIQVALGHLVDQAVE  128
            S TIGV+ A S+ Y  +  + +IE++AR AGY +  ++  ++  + +   + +L DQ+VE
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  129  GLvvvapqvrvrevIASMSLDVPYVTMQSDGRGDAHD--LSVDQIAGARLATRHLLELGH  186
            G+ V+A++    + ++ +  D+P   + S++ ++++   + +DQ  GARLA RHL +LGH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  187  RDIYHLAGPQDWIEAEARMRGFLDAMSAADVPTTAPILGDWTAEFGFYAGREMLRLRD--  244
              I HLAG  + ++A AR++G  D ++ +       + GD TAE G+ ++ E+ R  D  
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  245  FTAIFSSNDQMALGLIHAVRDAGLDVPGDVSIVGFDDIPEAAHFWPPLTTVRQDFAEVGR  304
             TAIF++ND MALG++ A+ + GL  P+DVS+VGFDDI+ A HF P+LTT+RQDF  +G 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  305  RCVALLLDGMGGTGDRYRGTITPELVVRASTGPP  338
              +  LL  M+G  +  R  I P LVVR ST++P
Sbjct  326  SAIETLLSTMAGQ-EPVRRQIPPTLVVRKSTAAP  358

81) CMS_0130 in NC_010407


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  167 bits (617),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 143/334 (43%), Positives = 218/334 (66%), Gaps = 5/334 (1%)

Query  9    GRAPSIRDVARLAGVSHQTVSRVLNDSPSLRAETRQRVLDVMEQVQYRPNRAARALVTSR  68
            GRAP++ DVA++AGVSH TVSRVLN+ PS+R+ETR RV   + Q+ YR N  ARAL + R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  69   SRTIGVLTAQSSQYGPassiaaieaaareaGYLVTTTNLPSSDEAAIQVALGHLVDQAVE  128
            S TIGV+ A S+ Y  +  + +IE++AR AGY +  ++  ++  + +   + +L DQ+VE
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  129  GLvvvapqvrvrevIASMSLDVPYVTMQSDGRGDAHD--LSVDQIAGARLATRHLLDLGH  186
            G+ V+A++    + ++ +  D+P   + S++ ++++   + +DQ  GARLA RHL DLGH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  187  RDIYHLAGPQDWIEAEARMRGFLDAMSAAEVPTTAPILGDWTAEFGFYAGREMLRLRD--  244
              I HLAG  + ++A AR++G  D ++ +       + GD TAE G+ ++ E+ R  D  
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  245  FTAIFSSNDQMALGLIHAVRDAGLDVPRDVSIVGFDDIPEAAHFWPPLTTVRQDFAEVGC  304
             TAIF++ND MALG++ A+ + GL  P DVS+VGFDDI+ A HF P+LTT+RQDF  +G 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  305  RCVALLLDGMGGTGDRYRGTITPELVVRASSGPP  338
              +  LL  M+G  +  R  I P LVVR S+++P
Sbjct  326  SAIETLLSTMAGQ-EPVRRQIPPTLVVRKSTAAP  358

82) AMIS_57680 in NC_017093


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  167 bits (619),  Expect = 7e-43, Method: Compositional matrix adjust.
 Identities = 140/333 (43%), Positives = 205/333 (62%), Gaps = 12/333 (3%)

Query  1    MADVARLAGVSSQTVSRVANGQSGVVESTREQVLAAMRELGYRPNSAARSLRYGRFNTIG  60
            M DVA++AGVS  TVSRV NG+++V   TR +V AA+ +LGYR N+ AR+L+  R +TIG
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  61   VILFGLSSTGNSRTVEAIATHAAAEGYAITLIPVGAPTQDNVLGAFTRMGELAVDGVILI  120
            V++ G +    +R + +I T A A GY I L +  + +  ++     R+ + +V+GV +I
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  121  ----IEVHLLDATAVALPPGvhvvvvDSDAGDRYPVVDTDQADGTRQAVRHLIGLGHRTV  176
                + V+ L      +P +V +    S++  R + V+ DQ  G+R AVRHL +LGH  +
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNP--RISFVELDQELGARLAVRHLRDLGHERI  208

Query  177  HHVAGPAESFAAERRAGAWRATLE-EAGLPIPEIERGDWSADSGHRAGLRLA--ADPSCT  233
             H+AG  E+F A  R  +WR  L   ++LP   +E GD +A+SG R+++ LA  +D   T
Sbjct  209  THLAGNFETFDAAARVQGWRDELACSPSLPQQLLE-GDFTAESGYRGAMELARSSDGLPT  267

Query  234  AIFAANDQMALGVLRALHESGRRVPADVSVVGFDDIADASAYLPPLTTVHQDFAEVGRRC  293
            AIFA+ND MALGVL AL E G   P DVS+VGFDDIA+A  ++P+LTT++QDF  +G   
Sbjct  268  AIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSA  327

Query  294  VRLLLDQIHDGPAAPGTDLVPTTLTVRDSTAAP  326
            +  LL  +  +   P    +P TL VR STAAP
Sbjct  328  IETLLSTM--AGQEPVRRQIPPTLVVRKSTAAP  358

83) Deima_0261 in NC_014958


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  167 bits (619),  Expect = 7e-43, Method: Compositional matrix adjust.
 Identities = 141/344 (41%), Positives = 223/344 (65%), Gaps = 15/344 (4%)

Query  3    KAITRNATITDVAKLAGVSYQTVSRVINDHPSVAPATRERVQNAIDALNYRPSLVAKSLV  62
            + + R + + DVA++AGVS  TVSRV+N+HPSV P TR RV+ AI  L YR + VA++L 
Sbjct  23   QVMGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALK  82

Query  63   TRRTQLIGVVAYGTDQYGPAQIVQNVERAAREYGYEILLTTLHAFATAEMQANVQRLMQF  122
            ++R+  IGVV  G++ Y  ++++  +E +AR  GYEI L++ ++ A++++   V+RL + 
Sbjct  83   SKRSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQ  142

Query  123  GVDGVVLLTPFQPQMAVDAVGGSLPYILIDA--NEKVEGSSVIIDQFE---GACQATTHL  177
            +V+GV ++++   Q+AVDA+++ ++ I +    +  V  + + + +++   GA  A  HL
Sbjct  143  SVEGVAVIAA--RQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHL  200

Query  178  LDLGHERILHVSGPVEWSDAELRHQGYVHalerarleplprlIGDWSARSG-HEAVQ--R  234
             DLGHERI H++G  E  DA  R QG  + L  +   P   L GD +A SG + A++  R
Sbjct  201  RDLGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELAR  260

Query  235  ALQDGLPFTAVFAGNDQMALGAIAALHASGRRVPEDVSVVGFDNTPESAFFSPALTTVHQ  294
            +  DGLP TA+FAGND MALG +AAL   G   P+DVS+VGFD+ + +  F PALTT++Q
Sbjct  261  S-SDGLP-TAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQ  318

Query  295  NFAALGRKSMDNLMRVMRDPERPARQYILQPQLIVRQSTGPAPR  338
            +F +LG  +++ L+  M + E   RQ  + P L+VR+ST+ APR
Sbjct  319  DFMTLGSSAIETLLSTMAGQEPVRRQ--IPPTLVVRKSTA-APR  359

84) MSMEI_1668 in NC_018289


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  167 bits (618),  Expect = 8e-43, Method: Compositional matrix adjust.
 Identities = 148/336 (45%), Positives = 221/336 (66%), Gaps = 8/336 (2%)

Query  1    MTRKPVMADVARLAGVSHQTVSRVINGSPSIRPATRRRVEDAIAQLGYRPNTAARALVTN  60
            M R P M DVA++AGVSH TVSRV+NG PS+RP TR RVE AIAQLGYR NT ARAL ++
Sbjct  25   MGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSK  84

Query  61   RSgiigiigtntgLYGPSSVQraveeaareaGYFSSAVPLASVTHQAIRGAVEHLSRLSV  120
            RS+ IG++ + +GLY  + V  ++E +AR AGY  +  +  + +   +   V +L+  SV
Sbjct  85   RSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSV  144

Query  121  EAIVMVAAQQDALTLVQSEDFGVPV-IVVEGDLSGAGLT-VGVDQVGAARKATQHLIDLG  178
            E++ ++AA+Q A+  +     ++P+ +V+ G +S + ++ V +DQ  +AR A +HL DLG
Sbjct  145  EGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLG  204

Query  179  HTAIAHVSGPPNFP--EAAGRTKGYLDAMLAARLVPHPDWHGDWSAARGYEIGEKIAAQR  236
            H  I+H++G  NF   +AA+R +G  D +  +  +P+   +GD +A  GY  +  +A   
Sbjct  205  HERITHLAG--NFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSS  262

Query  237  E--ITAVFVANDQMAIGLLHALHEAGVRVPDDVSVVGFDDIPEAAYLIPALTTIRQDFAA  294
            +   TA+F +ND MA+G+L AL E G+  PDDVS+VGFDDI+ A  +IPALTTIRQDF +
Sbjct  263  DGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMT  322

Query  295  VGRRAISLVTAQLSGVETDTALLPADLVVRASTAPP  330
            +G  AI  + + ++G E     +P+ LVVR STA+P
Sbjct  323  LGSSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAP  358

85) MSMEG_1708 in NC_008596


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  167 bits (618),  Expect = 8e-43, Method: Compositional matrix adjust.
 Identities = 148/336 (45%), Positives = 221/336 (66%), Gaps = 8/336 (2%)

Query  1    MTRKPVMADVARLAGVSHQTVSRVINGSPSIRPATRRRVEDAIAQLGYRPNTAARALVTN  60
            M R P M DVA++AGVSH TVSRV+NG PS+RP TR RVE AIAQLGYR NT ARAL ++
Sbjct  25   MGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSK  84

Query  61   RSgiigiigtntgLYGPSSVQraveeaareaGYFSSAVPLASVTHQAIRGAVEHLSRLSV  120
            RS+ IG++ + +GLY  + V  ++E +AR AGY  +  +  + +   +   V +L+  SV
Sbjct  85   RSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSV  144

Query  121  EAIVMVAAQQDALTLVQSEDFGVPV-IVVEGDLSGAGLT-VGVDQVGAARKATQHLIDLG  178
            E++ ++AA+Q A+  +     ++P+ +V+ G +S + ++ V +DQ  +AR A +HL DLG
Sbjct  145  EGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLG  204

Query  179  HTAIAHVSGPPNFP--EAAGRTKGYLDAMLAARLVPHPDWHGDWSAARGYEIGEKIAAQR  236
            H  I+H++G  NF   +AA+R +G  D +  +  +P+   +GD +A  GY  +  +A   
Sbjct  205  HERITHLAG--NFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSS  262

Query  237  E--ITAVFVANDQMAIGLLHALHEAGVRVPDDVSVVGFDDIPEAAYLIPALTTIRQDFAA  294
            +   TA+F +ND MA+G+L AL E G+  PDDVS+VGFDDI+ A  +IPALTTIRQDF +
Sbjct  263  DGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMT  322

Query  295  VGRRAISLVTAQLSGVETDTALLPADLVVRASTAPP  330
            +G  AI  + + ++G E     +P+ LVVR STA+P
Sbjct  323  LGSSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAP  358

86) CMN_00835 in NC_020891


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  166 bits (614),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 144/334 (44%), Positives = 217/334 (65%), Gaps = 5/334 (1%)

Query  8    GRAPSIRDVARLAGVSHQTVSRVLNDSPSLRAETRQRVLDVMEQIQYRPNRAARALVTSR  67
            GRAP++ DVA++AGVSH TVSRVLN+ PS+R+ETR RV   + Q+ YR N  ARAL + R
Sbjct  26   GRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKR  85

Query  68   SRTIGVLTAQSSQYGPassiaaiesaareaGYLVTTTNLPSSDEAAIQVALGHLVDQAVE  127
            S TIGV+ A S+ Y  +  + +IE++AR AGY +  ++  ++  + +   + +L DQ+VE
Sbjct  86   SSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  128  GLvvvapqvrvrevIASMSLDVPYVTMQSDGRGDAHD--LSVDQIAGARLATRHLLDLGH  185
            G+ V+A++    + ++ +  D+P   + S++ ++++   + +DQ  GARLA RHL DLGH
Sbjct  146  GVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGH  205

Query  186  RDIYHLAGPQDWIEAEARMRGFLDAMSAADAPTTAPILGDWTAEFGFYAGREMLRLRD--  243
              I HLAG  + ++A AR++G  D ++ + +     + GD TAE G+ ++ E+ R  D  
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  244  FTAIFSSNDQMALGLIHAVRDAGLDVPRDVSIVGFDDIPEAAHFWPPLTTVRQDFAEVGR  303
             TAIF++ND MALG++ A+ + GL  P DVS+VGFDDI+ A HF P+LTT+RQDF  +G 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  304  RCVALLLDGMDGTGDRYRGTITPELVVRASTGLP  337
              +  LL  M G  +  R  I P LVVR ST+ P
Sbjct  326  SAIETLLSTMAGQ-EPVRRQIPPTLVVRKSTAAP  358

87) ACPL_5446 in NC_017803


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  166 bits (612),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 142/340 (42%), Positives = 222/340 (66%), Gaps = 6/340 (1%)

Query  12   KERGSVMRDVAKLAGVSHQTVSRVINDHPNVRAETRERVLAAMRSlnyrrnlaartlatr  71
              R++ M DVA++AGVSH TVSRV+N+HP+VR+ETR RV AA+  L YRRN  AR+L ++
Sbjct  25   MGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSK  84

Query  72   ESRTLGIIGFETTLFGPESMLYGIESAARAAGYLVSVATVRELAHRPVLEAVDRLAQHDV  131
             S T+G++   + L+    +L GIE++ARAAGY +++A+ +  A   + E V RL+++ V
Sbjct  85   RSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSV  144

Query  132  DGIIAIAPKPAVTTALTHAPSglacvavggagtgaDPFPTVRVDNAAGARLATRHLLDLG  191
            +G+  IA++     AL++  ++++   V +++ +   ++ V +D+  GARLA RHL DLG
Sbjct  145  EGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLG  204

Query  192  HATVHHAAGPPDWPEAQARVDGWRETLSAAGAAVPPITPGWWDAAAGYEQGRRLA--ADP  249
            H  + H AG  +  +A ARV+GWR+ L+ + +    +  G   A +GY  +  LA  +D 
Sbjct  205  HERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDG  264

Query  250  AVTAVFCANDRIALGVLRALHEAGRRVPEDVSVVGFDDMPDSGYFLPPLTTIHQDFGEMG  309
              TA+F +ND +ALGVL AL E G   P+DVS+VGFDD+++++ F+P+LTTI+QDF  +G
Sbjct  265  LPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLG  324

Query  310  RRALALLLDHMAQEETDGPLSNVVVQPELVLRSSTGPRRP  349
              A+  LL  MA +E   P+    + P LV+R ST++ RP
Sbjct  325  SSAIETLLSTMAGQE---PVRR-QIPPTLVVRKSTAAPRP  360

88) SBI_08330 in NC_016582


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  161 bits (596),  Expect = 5e-41, Method: Compositional matrix adjust.
 Identities = 137/332 (42%), Positives = 212/332 (64%), Gaps = 10/332 (3%)

Query  20   MADVARLAGVSGQTVSRVLNDHPSvreetrervraamreLGYRPTASARTLASGRSRMLG  79
            M DVA++AGVS  TVSRVLN+HPSVR ETR RV AA+ +LGYR  + AR+L S RS  +G
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  80   VISFDATRFGPAATLAGINEAAQSAGYLVSTIALTATDQASVAGALDRLLGEGADGVIAI  139
            V+  ++  +  +  L GI+ +A++AGY ++  +  +   + +A  + RL +++ +GV  I
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  140  APQRSVGQTLVESGHDIPL-VTLDKSFGE-RVPVVAGDSASGARQATEHLLGLGHRTVWH  197
            A+++   ++L +   DIP+ V +  S ++ R++ V  D   GAR A  HL +LGH  + H
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITH  210

Query  198  IAGPAGWIAAEARLDGWRAALKDAGAVAPEPLFGDWSADSGY----ELGRRVAERPEVTA  253
            +AG    + A AR++GWR  L  + +++ + L GD +A+SGY    EL+R     P  TA
Sbjct  211  LAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLP--TA  268

Query  254  VFVSNDQMAVGVLRALHEAGRRVPEDVSVVGYDDIPEAAHLLPPLTTVRTDFAEVGRRCL  313
            +F +ND MA+GVL AL E G   P+DVS+VG+DDI+ A H++P+LTT+R DF  +G   +
Sbjct  269  IFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAI  328

Query  314  ALMLDQLHQAPEPGVRVDIPTELVVRRSTGPA  345
              +L  +  A +  VR +IP  LVVR+ST+++
Sbjct  329  ETLLSTM--AGQEPVRRQIPPTLVVRKSTAAP  358

89) MTES_2084 in NC_015125


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  161 bits (593),  Expect = 8e-41, Method: Compositional matrix adjust.
 Identities = 140/332 (43%), Positives = 219/332 (66%), Gaps = 9/332 (2%)

Query  1    MADVAAAAGVSGQTVSRVANGRTNVDPDTRQRVLDAMASLGYRPNSAARALRSGRFRSIG  60
            M DVA  AGVS  TVSRV NG+ +V P+TR RV  A+A LGYR N+ ARAL+S R  +IG
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  61   VIMFSLSSYGNTRTLDALASIAAASGYSITLITVQSASQSDVSGAFLRLREHAVDGIVIL  120
            V+M + + Y   R L ++ + A A+GY I L + Q+++ SD++    RL +++V+G+ + 
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAV-  149

Query  121  IETHRLGENELS-LPTGLPV-VVVDSSADYP-YAVVDNDQAQGARLATEHLLDLGHETVW  177
            I +++++ + LS + +++P+ VV+ +S   P  + V+ DQ  GARLA  HL DLGHE + 
Sbjct  150  IAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERIT  209

Query  178  HVSGPresfaaerrsaawraaLEDRGCRVPEVQIGDWTAESGHAIGVDLAQDAQ--VTAV  235
            H++G  E+F A  R  +WR  L        ++  GD TAESG   +++LA+ ++   TA+
Sbjct  210  HLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAI  269

Query  236  FAANDQMALGVIRALHEAGRAVPGDVSVVGFDDMPESSNFWPPLTTVRQRFERVGEEAMS  295
            FA+ND MALGV+ AL E G + P+DVS+VGFDD++ + +F P+LTT+RQ F  +G  A+ 
Sbjct  270  FAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIE  329

Query  296  ALIADIEGTGGEHARTLVPTSLVVR-ASSGPR  326
            +L++ +  +G E  R  +P +LVVR ++++PR
Sbjct  330  TLLSTM--AGQEPVRRQIPPTLVVRKSTAAPR  359

90) Sked_11590 in NC_013521


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  160 bits (592),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 137/338 (41%), Positives = 225/338 (67%), Gaps = 15/338 (4%)

Query  26   MVDVARAAQVSQKTVSRVVNREPNVSPEVRTRVLEAIASLGFRPNSAARALVTNRTRTIG  85
            MVDVA+ A VS+ TVSRV+N +P+V PE R+RV  AIA LG+R N+ ARAL ++R+ TIG
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  86   MVSIGSSLLGPASIVDGVEKAARGAGYSLTLVRTasggaddigaamdaLVAQGVEAI-VI  144
            +V  GS+L   + ++ G+E +AR+AGY + L    +G+A D++  +  L  Q+VE++ VI
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  145  SEPADSLQRIGHSVPGIPVLAVEHRENEDDDWI-LVGADTWGGARSATEHLLGLGHRTVW  203
            +    +++ +++ V++IP ++V    +  + +I +V  D   GAR A  HL +LGH  + 
Sbjct  151  AARQVAVDALSDVVADIP-MSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERIT  209

Query  204  HVAGP-DGWGTSENRVDGWRAALLESGCAVP---DVVRGDWTASSGYEIGLSLA-TRDDL  258
            H+AG  +  +++  RV+GWR  L   +C+ +   +++ GD TA SGY  ++ LA + D+L
Sbjct  210  HLAGNFETFDAA-ARVQGWRDEL---ACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  259  -TAVFAANDDMAVGLIHAFERSGLSVPDDVSVVGFDDIGTAGFLHTPLTTVRQDFAEIAR  317
             TA+FA+ND MA+G++ A+   GLS PDDVS+VGFDDI+ A+ +  +LTT+RQDF  ++ 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  318  QGMRRLIAAIEGRHVGSRQASVPVQLIIRESTARANPR  355
             ++  L++++ G++   RQ  +P  L++R STA + P+
Sbjct  326  SAIETLLSTMAGQEPVRRQ--IPPTLVVRKSTAAPRPH  361

91) Sked_04300 in NC_013521


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  159 bits (588),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 133/332 (41%), Positives = 206/332 (63%), Gaps = 8/332 (2%)

Query  26   DVAALAGVSAQTVSRVSTGAERVRPETRERVLAAMDELGYSPNYAARALRYAHFDTIGVI  85
            DVA +AGVS  TVSRV  G   VRPETR RV AA+ +LGY  N  ARAL+  +  TIGV+
Sbjct  33   DVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIGVV  92

Query  86   AHRLARTGEARTFEAVVDAARLEGYTVTLVDVQSPSSDEMTAAAARLTHQAIDGLVIIRA  145
                +    +R + ++  +AR  GY + L   Q+ ++ +++    RLT+Q+++G+ +I A
Sbjct  93   MAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVIAA  152

Query  146  EEQSPETLA---LPARMPVVVSDSRFVTHHPAVATDQAAGTRAAVEHLLGLGHETVHHLA  202
             + + ++L+       M+VV+S+S    + + V  DQ  G+R AV HL +LGHE + HLA
Sbjct  153  RQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITHLA  212

Query  203  GPADSSPAGLRVDSWRACLVAAGRPVPEVVRGDWSATSGYEQGLRIAADPEV--TAVFCA  260
            G  ++  A+ RV++WR  L  +     +++ GD +A SGY  ++ +A  ++   TA+F +
Sbjct  213  GNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAIFAG  272

Query  261  NDEMAAGLYRALHETGRSIPEDVSVVGFDDIPLAEHLWPPLTTVAQDFHQIGRELVDLLL  320
            ND MA G+  AL E G S P+DVS+VGFDDI+ A+H+ P+LTT+ QDF  +G   ++ LL
Sbjct  273  NDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIETLL  332

Query  321  RQVRDGESLTDVRSLLPVELVVRASTAPPRAR  352
              + + E+   VR  +P  LVVR STA+PR++
Sbjct  333  STMAGQEP---VRRQIPPTLVVRKSTAAPRPH  361

92) Isova_0783 in NC_015588


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  159 bits (586),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 151/337 (45%), Positives = 226/337 (68%), Gaps = 9/337 (2%)

Query  18   SMADVAAVAGVSHQTVSRVLNAHPSVRGETRERVLQAIESLGYRRNsaaralatarsatl  77
            +M DVA VAGVSH TVSRVLN+HPSVR ETR RV  AI  LGYRRN+ ARAL + RS+T+
Sbjct  30   GMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTI  89

Query  78   GVVTTGSALFGPTSTLVAVEGAARDEGYFVSVATLRTYDAAAMHEALEHFMAQGVEGIVV  137
            GVV +GS+L+     L+++E +AR  GY +++A+ +   A+ + E + ++  Q+VEG+ V
Sbjct  90   GVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAV  149

Query  138  IAPQDDVAAAVESFRapvpvvvvaaLEDAESAPGGPATLSLAVDQRSGARLATdhlldlg  197
            IA+++    AV+++   V+ + ++ +    ++ + P    + +DQ  GARLA  HL DLG
Sbjct  150  IAARQ---VAVDALSDVVADIPMSVV--MSGSVSNPRISFVELDQELGARLAVRHLRDLG  204

Query  198  hhdvvhvAGPQDWFDARERAAGWREALEARGVTPTRPRVCSWSADDGYAAGRDLAEAVGA  257
            H+ + H+AG  + FDA  R  GWR+ L      P +      +A+ GY ++ +LA    +
Sbjct  205  HERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELAR---S  261

Query  258  GEG-PTAVLAGNDQLALGILRALWERGLDVPGDVSVVGFDDVAGAAYFVPPLTTVRQPFa  316
            ++G PTA++AGND +ALG+L AL E GL  P+DVS+VGFDD+AGA  F+P+LTT+RQ F 
Sbjct  262  SDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFM  321

Query  317  rlgaravamvlaalaggDVPPERIAPELVVRSSTGAP  353
             LG+ A+  +L+++AG +    +I+P LVVR ST+AP
Sbjct  322  TLGSSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAP  358

93) Noca_0379 in NC_008699


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  158 bits (584),  Expect = 4e-40, Method: Compositional matrix adjust.
 Identities = 142/335 (43%), Positives = 216/335 (65%), Gaps = 6/335 (1%)

Query  8    RHPTMADVAARAGVSHQTVSRVINNAPSVRPETAARVVQAISDLGYRPNrsarllasrhs  67
            R P M DVA  AGVSH TVSRV+N  PSVRPET ARV  AI++LGYR N  AR L S++S
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  68   rlIGVATWGTSHHGPQQVllaldaaarradYRTAVSTLHALTEQDTRDGVEELLQLGVEA  127
              IGV   G++     +VLL+++++AR A+Y   +++ ++ +  D  + V  L + +VE+
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  128  VVLIIPHESMLRFATEADLGVP-TVVVEGDLSRMPLT-VGVDNVQGGSLATRHLLELGHR  185
            V +I +++  +   ++   ++P +VV+ G +S   ++ V +D+  G+ LA RHL +LGH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  186  TVVHVAGPPGWAEAAARVDGWRLELETWGRVVPPLRWGGDWSARSGYDAGVSLARDPEV-  244
             + H+AG     +AAARV+GWR EL     +   L   GD +A SGY +++ LAR ++  
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQL-LEGDFTAESGYRGAMELARSSDGL  265

Query  245  -TAVFAANDQMAMGVIAALREAGRRVPDDISVVGFDDLPESAYLDPPLTSVHQDFGELGR  303
             TA+FA+ND MA+GV+AAL E G   PDD+S+VGFDD++ +  + P+LT+++QDF  LG 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  304  RAMGLLERVLAGEKKPTADLVPTSLVVRASTSSPR  338
             A+  L   +AG+  P    +P +LVVR ST++PR
Sbjct  326  SAIETLLSTMAGQ-EPVRRQIPPTLVVRKSTAAPR  359

94) SCATT_p05810 in NC_017585


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  155 bits (571),  Expect = 4e-39, Method: Compositional matrix adjust.
 Identities = 151/343 (45%), Positives = 225/343 (66%), Gaps = 14/343 (4%)

Query  12   RSPTMADVARLVGVSHQTVSRVLSGHPNVREGTRAEVLRAIEELGYrrnssaralatrrt  71
            R+P M DVA++ GVSH TVSRVL+GHP+VR  TRA V  AI +LGYRRN+ ARAL ++R+
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  72   rtlGVVACNTTLFGPASTlagleeaaraegYLVSAVSLRRLSPQGLAQALAHLgewgveg  131
             T+GVV   + L+  +  L G+E +ARA GY ++  S +  ++ +LA+ + +L + +VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  132  vvvivPQREAVSALAALRPPFPVVTVEGGH--DLEISGVSVDQALGARLVTGHLLAAGHT  189
            V VI +++ AV AL+ + + +P+  V +G   +  IS V +DQ LGARL   HL   GH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  190  TVWHVAGPPDWLEAGARTAGWRAVLEEAGAPVPAPLV-GDWTPLSGYRAGQELAGRVLAG  248
             + H+AG  + ++A+AR  GWR  L   ++++P  L+ GD T+ SGYR++ ELA      
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELA-CSPSLPQQLLEGDFTAESGYRGAMELA------  259

Query  249  PGHGGDPEVTAVFVANDQMALGVLRALREAGLAVPGRVAVAGFDDIPESEFFAPPLTTVR  308
              +++D   TA+F +ND MALGVL AL E GL+ P+ V++ GFDDI+ ++ F P+LTT+R
Sbjct  260  --RSSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIR  317

Query  309  QDFTEVGRASIRLLLDQVEGGATGTRRVVIDPHLIVRGSTSTP  351
            QDF  +G ++I  LL  + G     R+  I P L+VR ST++P
Sbjct  318  QDFMTLGSSAIETLLSTMAGQEPVRRQ--IPPTLVVRKSTAAP  358

95) SCAT_p1151 in NC_016113


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  155 bits (571),  Expect = 4e-39, Method: Compositional matrix adjust.
 Identities = 151/343 (45%), Positives = 225/343 (66%), Gaps = 14/343 (4%)

Query  12   RSPTMADVARLVGVSHQTVSRVLSGHPNVREGTRAEVLRAIEELGYrrnssaralatrrt  71
            R+P M DVA++ GVSH TVSRVL+GHP+VR  TRA V  AI +LGYRRN+ ARAL ++R+
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  72   rtlGVVACNTTLFGPASTlagleeaaraegYLVSAVSLRRLSPQGLAQALAHLgewgveg  131
             T+GVV   + L+  +  L G+E +ARA GY ++  S +  ++ +LA+ + +L + +VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  132  vvvivPQREAVSALAALRPPFPVVTVEGGH--DLEISGVSVDQALGARLVTGHLLAAGHT  189
            V VI +++ AV AL+ + + +P+  V +G   +  IS V +DQ LGARL   HL   GH 
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  190  TVWHVAGPPDWLEAGARTAGWRAVLEEAGAPVPAPLV-GDWTPLSGYRAGQELAGRVLAG  248
             + H+AG  + ++A+AR  GWR  L   ++++P  L+ GD T+ SGYR++ ELA      
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELA-CSPSLPQQLLEGDFTAESGYRGAMELA------  259

Query  249  PGHGGDPEVTAVFVANDQMALGVLRALREAGLAVPGRVAVAGFDDIPESEFFAPPLTTVR  308
              +++D   TA+F +ND MALGVL AL E GL+ P+ V++ GFDDI+ ++ F P+LTT+R
Sbjct  260  --RSSDGLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIR  317

Query  309  QDFTEVGRASIRLLLDQVEGGATGTRRVVIDPHLIVRGSTSTP  351
            QDF  +G ++I  LL  + G     R+  I P L+VR ST++P
Sbjct  318  QDFMTLGSSAIETLLSTMAGQEPVRRQ--IPPTLVVRKSTAAP  358

96) SCAB_43681 in NC_013929


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  155 bits (571),  Expect = 4e-39, Method: Compositional matrix adjust.
 Identities = 125/306 (41%), Positives = 189/306 (62%), Gaps = 4/306 (1%)

Query  21   SMGDVARLAGVSSQTVSRVSNGFAGVNEDTRRQVLAAMRELGYRPNSAARALRRGEFRTL  80
            +M DVA++AGVS  TVSRV NG ++V  +TR +V AA+ +LGYR N+ ARAL+     T+
Sbjct  30   GMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTI  89

Query  81   GVITFSLSTLGNIRTLDAIATSAAREGYAVTLLPVAVPTQDEVNGAFSRLGELAVDAVIV  140
            GV+  + +     R L +I T+A   GY + L +    +  ++     RL + +V++V V
Sbjct  90   GVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAV  149

Query  141  IM--EVHLLDAATvsvppgvqvvvADSDAGDRYTVVDTDQAGGARDAVRHLLELGHGTVW  198
            I   +V +   + V     + VV+++S +  R + V+ DQ  GAR AVRHL +LGH  + 
Sbjct  150  IAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERIT  209

Query  199  HLAGPEDSFAAQRRANAWRATLEEAGRPAPPLVRGDWSAESGYRAGLRIAEQAD--CTAV  256
            HLAG  ++F A  R ++WR  L  +   +  L+ GD +AESGYR+++ +A  +D   TA+
Sbjct  210  HLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAI  269

Query  257  FVANDQMALGLLRALDERGRRVPEDVSVVGFDDIPEAASFLPPLTTVHQDFAEVGRLCVR  316
            F +ND MALG+L AL E G   P+DVS+VGFDDI+ A  F+P+LTT++QDF  +G   + 
Sbjct  270  FAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIE  329

Query  317  GVLSKM  322
             +LS M
Sbjct  330  TLLSTM  335

97) VAB18032_18615 in NC_015434


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  153 bits (564),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 138/328 (43%), Positives = 208/328 (64%), Gaps = 8/328 (2%)

Query  38   MRDVAELAGVSAQTVSRVINGHPYVADHTRQRVLDAMRRLDYRLNPAARALVTRRSGTLG  97
            M DVA++AGVS  TVSRV+NGHP V  +TR RV  A+ +L+YR N  ARAL ++RS+T+G
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  98   IVGYESPLYGPTSMLYAIEGAARAAGYFVSVASLRHLDRRSVFEAVDWLRRQSVEGLIAI  157
            +V   S LY    +L +IE +ARAAGY +++AS +      + E V +L  QSVEG+  I
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  158  APKPAMADALAEASSGLP-AVTVGGGCTEA-VSSAQIDNVEGARLATRHLLNLGHTTVHH  215
            A++    DAL++  +++P +V ++G+ +++ +S  ++D+  GARLA RHL +LGH  + H
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITH  210

Query  216  LAGPQDWPEARERVagwhaalraagaptpavvpgDWSAGTGYEQGERLARDRS--VTAIF  273
            LAG  +  +A  RV GW+  L  + +    ++ GD +A +GY  +  LAR      TAIF
Sbjct  211  LAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAIF  270

Query  274  CASDQLALGVLRALHEAGRRVPGEVSVVGFDGTADGAHFLPPLTSVRQDFAElgrrslrl  333
             ++D +ALGVL AL E G   P++VS+VGFD+ A++ HF+P+LT++RQDF          
Sbjct  271  AGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDF----MTLGSS  326

Query  334  lleqldrPASGSRPRRDVLVPELVIRRS  361
             +E L    +G  P R  + P LV+R+S
Sbjct  327  AIETLLSTMAGQEPVRRQIPPTLVVRKS  354

98) Xcel_0400 in NC_013530


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  153 bits (563),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 130/305 (43%), Positives = 204/305 (67%), Gaps = 6/305 (1%)

Query  3    VARPPAMADVAARAGVSHQTVSRVLNAHPSVRPETRERVLAAIAELGYRRNSaaralvta  62
            ++R+P+M DVA  AGVSH TVSRVLN+HPSVRPETR RV AAIA+LGYRRN+ ARAL + 
Sbjct  25   MGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSK  84

Query  63   rtttvglltSGSAHFGPASTVLATEAALRQEGYFVSTSSPDSYDPaaaaaaLERLVDQGV  122
            R++T+G++ +GS+ +  +  +L+ E++ R  GY ++ +S ++  ++  A  + RL DQ+V
Sbjct  85   RSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSV  144

Query  123  EGIVAVCPVQDVAEAIDDLDPPCPvvvvaarrDEQTGGKARYVHADQYRGAQEATEHLVD  182
            EG+  + + Q   +A+ D+ +  P  +     +  +  +  +V+ DQ  GA+ A  HL D
Sbjct  145  EGVAVIAARQVAVDALSDVVADIP--MSVVMSGSVSNPRISFVELDQELGARLAVRHLRD  202

Query  183  LGHTHVVHLAGPERWFDAIERAAAFRD-VTATRDVEAQVVQARGWSARRGYELGLSLAEQ  241
            LGH ++ HLAG    FDA  R  + RD ++ +  +  Q++++ + +A  GY  ++ LA  
Sbjct  203  LGHERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEG-DFTAESGYRGAMELARS  261

Query  242  AGRPGGPTGFFAANDLIAIGLLRAFWERGLRVPDDVSVVGFDDIEESAFLVPALTTVRQP  301
            ++  G PT++FA+NDL+A+G+L A+ E GL  PDDVS+VGFDDI  +  ++PALTT+RQ 
Sbjct  262  SD--GLPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQD  319

Query  302  FEALG  306
            F +LG
Sbjct  320  FMTLG  324

99) AMIS_55700 in NC_017093


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  151 bits (556),  Expect = 7e-38, Method: Compositional matrix adjust.
 Identities = 125/292 (43%), Positives = 198/292 (68%), Gaps = 5/292 (1%)

Query  1    MRDVAKLAGVSHQTVSRVINEHPNVRAETRERVLAAMRSlnyrrnlaartlatrESHTLG  60
            M DVA++AGVSH TVSRV+N HP+VR+ETR RV AA+  L YRRN  AR+L ++ S T+G
Sbjct  31   MVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIG  90

Query  61   IIGFETTLFGPESMLYGIESAARAAGYLVSVATVRDLEHRPVLEAVDRLAQHDVDGIIAI  120
            ++   + L+    +L GIE++ARAAGY +++A+ ++     + E V RL+++ V+G+  I
Sbjct  91   VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVI  150

Query  121  APKPSVLTALTHAPGGLA-CVAVGGASGSLEEPFPTVRVDNTAGARLATRHLLDLGHATV  179
            A++   + AL++  ++++  V ++G+ ++   +F  V +D+  GARLA RHL DLGH  +
Sbjct  151  AARQVAVDALSDVVADIPMSVVMSGSVSNPRISF--VELDQELGARLAVRHLRDLGHERI  208

Query  180  HHVAGPPDWPESQARVEGWRETLYAAGAVVPPVTSGWWDAAAGYEQGRRLA--ADPAVTA  237
             H+AG  +  ++ ARV+GWR+ L  + ++   +  G   A +GY  +  LA  +D   TA
Sbjct  209  THLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTA  268

Query  238  IFCANDRIALGVLRALQEGGRRVPEDVSVVGFDDMPDSGYFLPPLTTVHQDF  289
            IF +ND +ALGVL AL E G   P+DVS+VGFDD+++++ F+P+LTT++QDF
Sbjct  269  IFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDF  320

100) ACPL_5586 in NC_017803


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  150 bits (553),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 136/334 (41%), Positives = 203/334 (61%), Gaps = 12/334 (3%)

Query  44   SMADVAKLAGVSSQTVSRVANGQVGVVEATREQVLAAMRELGYRPNSAARSLRYGRFNTL  103
            +M DVA++AGVS  TVSRV NG+ +V   TR +V AA+ +LGYR N+ AR+L+  R +T+
Sbjct  30   GMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTI  89

Query  104  GVILFGLSSTGNSRTVEaiatqaaaagyaITLIPVGVPTQDNVLGAFTRMGELAVDGVIV  163
            GV++ G +    +R + +I T A AAGY I L +    +  ++     R+ + +V+GV V
Sbjct  90   GVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAV  149

Query  164  I----IEVHLLDAATVALPPGvhvvvvDSDAGERYPVVDTDQADGARQAVRHLLDLGHHT  219
            I    + V+ L      +P +V +    S++  R + V+ DQ  GAR AVRHL DLGH+ 
Sbjct  150  IAARQVAVDALSDVVADIPMSVVMSGSVSNP--RISFVELDQELGARLAVRHLRDLGHER  207

Query  220  VWHIAGPAGSYSAERRATAWRTVLEEAGRPVPPIGRGDWSAESGHRAGLDLPADC----T  275
            + H+AG   ++ A  R  +WR  L  +      +  GD +AESG R++++L+       T
Sbjct  208  ITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPT  267

Query  276  AVFVANDQMALGVLRALHERGRRVPRDVSVVGFDDIADASSYLPPLTTVHQDFAEVGRRC  335
            A+F +ND MALGVL AL E G   P DVS+VGFDDIA+A  ++P+LTT++QDF  +G   
Sbjct  268  AIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSA  327

Query  336  VQALLDQIAAGPAAPGTDLVPTHLVVRGSTAAPH  369
            +++LL  +A+    P    +P  LVVR STAAP+
Sbjct  328  IETLLSTMAG--QEPVRRQIPPTLVVRKSTAAPR  359

101) Micau_3818 in NC_014391


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  148 bits (545),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 143/338 (43%), Positives = 215/338 (64%), Gaps = 8/338 (2%)

Query  9    VPRHSIMRDVARLAGVSNQTVSRVLNAHPHvrddtrrrvlaavraldyrrNPAARALVTR  68
            + R + M DVA++AGVS+ TVSRVLN+HP VR +TR RV AA+  L+YRRN  ARAL ++
Sbjct  25   MGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSK  84

Query  69   RSGTLGIIAYESALYGPTSMLYAIEGAARSAGYFLSVAGLRDLDRRSVLDAVDWLRAQSV  128
            RS+T+G++   S+LY    +L +IE +AR+AGY +++A+ ++     + + V +L  QSV
Sbjct  85   RSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSV  144

Query  129  EGiiaiapkpvvaaalaQVSDG--LAVVGVGGGHDEAVPNVQIDNAAGARLATRHLLDLG  186
            EG+  IA++ V   AL++V  +  ++VV  G+  +  ++ V++D+  GARLA RHL DLG
Sbjct  145  EGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLG  204

Query  187  HATVHHVAGPADWPEATERTDGWRAGLHATGRPSPYAVPGAWTARAGYTQGRRLARDPSV  246
            H  + H+AG  +  +A+ R +GWR  L  +   +   + G  TA +GY  +  LAR +  
Sbjct  205  HERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDG  264

Query  247  --TAVFCASDQIALGVLRALHEAGRRVPDEVSVVGFDDMPDAGYFLPPLTTVRQDFaelg  304
              TA+F ++D +ALGVL AL E G   PD+VS+VGFDD+++A+ F+P+LTT+RQDF    
Sbjct  265  LPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDF----  320

Query  305  rrsldlllaqldaggdrSAPGRVLLTPELVVRDSTAAP  342
                   +  L +      P R  + P LVVR STAAP
Sbjct  321  MTLGSSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAP  358

102) ML5_4598 in NC_014815


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  148 bits (545),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 143/338 (43%), Positives = 215/338 (64%), Gaps = 8/338 (2%)

Query  9    VPRHSIMRDVARLAGVSNQTVSRVLNAHPHvrddtrrrvlaavraldyrrNPAARALVTR  68
            + R + M DVA++AGVS+ TVSRVLN+HP VR +TR RV AA+  L+YRRN  ARAL ++
Sbjct  25   MGRAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSK  84

Query  69   RSGTLGIIAYESALYGPTSMLYAIEGAARSAGYFLSVAGLRDLDRRSVLDAVDWLRAQSV  128
            RS+T+G++   S+LY    +L +IE +AR+AGY +++A+ ++     + + V +L  QSV
Sbjct  85   RSSTIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSV  144

Query  129  EGiiaiapkpvvaaalaQVSDG--LAVVGVGGGHDEAVPNVQIDNAAGARLATRHLLDLG  186
            EG+  IA++ V   AL++V  +  ++VV  G+  +  ++ V++D+  GARLA RHL DLG
Sbjct  145  EGVAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLG  204

Query  187  HATVHHVAGPADWPEATERTDGWRAGLHATGRPSPYAVPGAWTARAGYTQGRRLARDPSV  246
            H  + H+AG  +  +A+ R +GWR  L  +   +   + G  TA +GY  +  LAR +  
Sbjct  205  HERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDG  264

Query  247  --TAVFCASDQIALGVLRALHEAGRRVPDEVSVVGFDDMPDAGYFLPPLTTVRQDFaelg  304
              TA+F ++D +ALGVL AL E G   PD+VS+VGFDD+++A+ F+P+LTT+RQDF    
Sbjct  265  LPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDF----  320

Query  305  rrsldlllaqldaggdrSAPGRVLLTPELVVRDSTAAP  342
                   +  L +      P R  + P LVVR STAAP
Sbjct  321  MTLGSSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAP  358

103) Celf_0881 in NC_015514


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  147 bits (543),  Expect = 6e-37, Method: Compositional matrix adjust.
 Identities = 139/324 (43%), Positives = 211/324 (66%), Gaps = 11/324 (3%)

Query  19   SQKTVSRVINGDPHvrpevrervraaaaQLGYRPNRAARQLVSGRSRTIGVLSVGSTDFG  78
            S+ TVSRV+NG+P VRPE R RV AA AQLGYR N  AR L S RS TIGV+  GS  + 
Sbjct  41   SHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIGVVMAGSGLYE  100

Query  79   PASLMVGIEHAIRSAGYAMSVVNTLEGDPESITESLQGLVDQGVDGVAVNEP--VGVFQL  136
             + +++GIE + R+AGY +++ +   G +  ++E ++ L DQ+V+GVAV  +  V+V  L
Sbjct  101  LPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVIAARQVAVDAL  160

Query  137  DPGQIGDLPI-LSLSGRYGISGNEI-MVDADQSGGGRAATEHLLGLGHRTVHHVAGPAGW  194
             ++ ++D+P+ + +SG  ++S   I  V+ DQ  G+R A  HL +LGH  + H+AG    
Sbjct  161  -SDVVADIPMSVVMSG--SVSNPRISFVELDQELGARLAVRHLRDLGHERITHLAGNFET  217

Query  195  RSAGLRLDGWRDALERAGAPAPEPLHGDWSAPSGYALGQRLAADPD--VSAVFVANDHMA  252
              A+ R++GWRD L  + + + + L+GD +A SGY  +  LA  +D   +A+F +ND MA
Sbjct  218  FDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGLPTAIFAGNDLMA  277

Query  253  IGVLRAFADAGRDVPGDVSVVGFDDIPEAAYLTRALTTIRQDLAQLASFGVRLLVDAIEN  312
            +GVL A+A+ G   P+DVS+VGFDDI+ A  +  ALTTIRQD+  L+S ++  L+ ++  
Sbjct  278  LGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIETLLSTMAG  337

Query  313  PRRQDRREHVPVELVVRETTAAPR  336
              ++  R ++P  LVVR +TAAPR
Sbjct  338  --QEPVRRQIPPTLVVRKSTAAPR  359

104) Sfla_0176 in NC_016114


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  137 bits (502),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 141/337 (42%), Positives = 218/337 (65%), Gaps = 9/337 (2%)

Query  9    RQPSMADVARVAGVSAQTVSRALRGSAHVNPDTGRRVLAAVEQVGYRFNsaaralssgrs  68
            R P+M DVA+VAGVS  TVSR L G + V P+T  RV AA+ Q+GYR N+ ARAL S RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  69   lTVGLVLLASGGYYSRSAVTAGVESAADDAGYAVSIATIASldarrmeralarlaDQGVD  128
             T+G V++A++G Y  + V  G+E++A  AGY +++A+  +  A  +   + RL+DQ+V+
Sbjct  87   STIG-VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  129  GL-VIAVPLISVTRKMEDITRDIPTVTLDGSRTAGARV--IGIDQREAGRIATQHLLDLG  185
            G+ VIA   ++V   + D+  DIP   + ++  + +R+  + +DQ  ++R+A +HL DLG
Sbjct  146  GVAVIAARQVAVD-ALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLG  204

Query  186  HRQIWHLSGPDEWLEARQRREGWQECLALAGIEAPPALEGDWSPGSGYRQGQIIAMIPE-  244
            H +I HL+G  E ++A  R +GW++ LA +   +   LEGD ++ SGYR +  +A  ++ 
Sbjct  205  HERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDG  264

Query  245  -VTAVFVACDEMAFGLIRALRERGRAVPEdvsvvsvddIALASYCTPPLTAVRQDFFGHG  303
              TA+F + D MA+G++ AL E G + P+DVS+V+ DDIA A    P+LT++RQDF   G
Sbjct  265  LPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLG  324

Query  304  AAAVRLLLQDDATVEP--SAVEATLSVRASTAPPRPR  338
            ++A+  LL   A  EP    + +TL VR STA+PRP+
Sbjct  325  SSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAPRPH  361

105) Bfae_29490 in NC_013172


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  136 bits (500),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 131/315 (42%), Positives = 198/315 (63%), Gaps = 5/315 (1%)

Query  6    RRPSMGDVASRAGVSYQTVSRVLNAPDIVRPDTRERVLEAISELGYTRNRAARALKTARS  65
            R P+M DVA  AGVS  TVSRVLN+   VRP+TR RV  AI++LGY RN  ARALK+ RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  66   SLLGVLTDDLSLFGPaetttaieaaareaGYSVVLTS-MAHGPHGAHQIGAELLGSGVEG  124
            S +GV+  + +L+  +    +IE++AR AGY + L+S  + ++ +  ++   L + +VEG
Sbjct  87   STIGVVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEG  146

Query  125  ILVIAAHEGMtsavsavasstpvvavsaQPPEEADVEVVGIDQGRGAHEVVEHLQRTGVR  184
            + VIAA++    A+S V +  P+  V + +  ++ +  V +DQ  GA+  V HL+  G  
Sbjct  147  VAVIAARQVAVDALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHE  206

Query  185  SIVHLAGPTDWFDARARRSGFTAALE-ALGLDGEVVGAGDWTPCSGYELTGSLLRS--GR  241
             I HLAG  + FDA AR  G    L  + +L  +++  GD T+ SGY  +  L RS  G 
Sbjct  207  RITHLAGNFETFDAAARVQGWRDELACSPSLPQQLL-EGDFTAESGYRGAMELARSSDGL  265

Query  242  PEAIFAANDMIAIGVLHALHEHGLRVPEDVAVVGFDNTLGAEFLVPSLTTVDQPFAEVGR  301
            P AIFA+ND++A+GVL AL E GL  P+DV++VGFD+  GA+ ++P+LTT+ Q F  +G 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  302  AALRHLVGMLEEDRP  316
            +A+  L++ +  + P
Sbjct  326  SAIETLLSTMAGQEP  340

106) F750_6845 in NC_021055


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  136 bits (498),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 140/337 (42%), Positives = 217/337 (65%), Gaps = 9/337 (2%)

Query  9    RQPSMADVARVAGVSAQTVSRALRGSAHVNPDTGRRVLAAVEQVGYRFNsaaralssgrs  68
            R P+M DVA+VAGVS  TVSR L G + V P+T  RV AA+ Q+GYR N+ ARAL S RS
Sbjct  27   RAPGMVDVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRS  86

Query  69   lTVGLVLLASGGYYSRSAVTAGVESAADDAGYAVSIATIASldarrmeralarlaDQGVD  128
             T+G V++A++G Y  + V  G+E++A  AGY +++A+  +  A  +   + RL+DQ+V+
Sbjct  87   STIG-VVMAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVE  145

Query  129  GL-VIAVPLISVTRKMEDITRDIPTVTLDGSRTAGARV--IGIDQREAGRIATQHLLDLG  185
            G+ VIA   ++V   + D+  DIP   + ++  + +R+  + +DQ  ++R+A +HL DLG
Sbjct  146  GVAVIAARQVAVD-ALSDVVADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLG  204

Query  186  HRQIWHLSGPDEWLEARQRREGWQECLALAGIEAPPALEGDWSPGSGYRQGQIIAMIPE-  244
            H +I HL+G  E ++A  R +GW++ LA +   +   LEGD ++ SGYR +  +A  ++ 
Sbjct  205  HERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDG  264

Query  245  -VTAVFVACDEMAFGLIRALRERGRAVPEdvsvvsvddIALASYCTPPLTAVRQDFFGHG  303
              TA+F + D MA+G++ AL E G + P+DVS+V+ DDIA A    P+LT++RQDF   G
Sbjct  265  LPTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLG  324

Query  304  AAAVRLLLQDGVTVEP--SAVEATLSVRASTAPPRPR  338
            ++A+  LL      EP    + +TL VR STA+PRP+
Sbjct  325  SSAIETLLSTMAGQEPVRRQIPPTLVVRKSTAAPRPH  361

107) STH770 in NC_006177


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  129 bits (472),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 128/318 (41%), Positives = 199/318 (63%), Gaps = 20/318 (6%)

Query  21   LNGTGYVKAETRERVLAAAAELGYVPSQLARGLVRRLSGTVGLVVPDITNPFFPL--ITR  78
            LNG   V++ETR RV AA A+LGY  + +AR+L  + S+T+G+V+++  + ++ L  +  
Sbjct  49   LNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIGVVMAG--SGLYELPRVLL  106

Query  79   GVEDAASEAGYTVFLCNTDNDPVLE-AQDVRKLREHRVDGIIFVGTTERRELVDQL--LA  135
            G+E +A  AGY + L + + ++  + A+ VR+L ++ V+G+  +++  R+  VD L  + 
Sbjct  107  GIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVIAA--RQVAVDALSDVV  164

Query  136  DDIPV-VVMDRQLEHAdvdtvtvdNVAGAQAACRHLIELGHRRIAHAAGHQSTRTGQDRC  194
             DIP+ VVM   + ++ +  V +D+  GA+ A RHL +LGH RI+H AG+  T  +  R 
Sbjct  165  ADIPMSVVMSGSVSNPRISFVELDQELGARLAVRHLRDLGHERITHLAGNFETFDAAARV  224

Query  195  QGYRMALE-EADIPYDPACVTWGDFTFESGFRVGQVLLGLSPR--PTAVFAGNDLIALGV  251
            QG R  L   + +P +      GDFT ESG+R G + L+ S+   PTA+FAGNDL+ALGV
Sbjct  225  QGWRDELACSPSLPQQLLE---GDFTAESGYR-GAMELARSSDGLPTAIFAGNDLMALGV  280

Query  252  IRAAEEAGLSVPDDLSVVGFDNIQMAALVRPGLTTVRQPAREMGRLAMTMLLERIRGEFS  311
            + A  E GLS PDD+S+VGFD+I  A    P+LTT+RQ    +G  A+  LL  + G+  
Sbjct  281  LAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGSSAIETLLSTMAGQ--  338

Query  312  GPGRRHVYPPELIVRGTT  329
             P RR++ PP L+VR +T
Sbjct  339  EPVRRQI-PPTLVVRKST  355

108) SBI_09934 in NC_016582


> NC_009480_P1|3|G3|148271214|YP_001220775.1|Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382|+|2071..3156|-|CMM_0036|LacI 
family transcriptional regulator
Length=361

 Score =  115 bits (421),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 123/301 (41%), Positives = 183/301 (61%), Gaps = 10/301 (3%)

Query  17   DVAREAGVSHQTVSRVINGHSAVADATRHRVEAAIDLLGFRPNHAARELAGKAARSLTVL  76
            DVA+ AGVSH TVSRV+NGH++V   TR RVEAAI  LG+R N  AR L +K + ++ V+
Sbjct  33   DVAQVAGVSHVTVSRVLNGHPSVRPETRARVEAAIAQLGYRRNTVARALKSKRSSTIGVV  92

Query  77   TSDTSLYGAASTLRGIEEaaraasfavavsvLDRHAHPDRAELRARLA-RPGEPVVVIAF  135
             ++++LY  +  L GIE +ARAA++ + ++  +  A +D AE+  RL+ ++ E V VIA 
Sbjct  93   MAGSGLYELPRVLLGIETTARAAGYEINLASWQGGAASDLAEMVRRLTDQSVEGVAVIAA  152

Query  136  DAPGVHALRLLPADTPVVAAVEHPSGSEPVSSRPQAWLDDRLPPPPAAYQATRHLLGLGH  195
               +V+AL  + AD P+   +     S +VS+   + ++  L    +A  A RHL +LGH
Sbjct  153  RQVAVDALSDVVADIPMSVVM-----SGSVSNPRISFVE--LDQELGARLAVRHLRDLGH  205

Query  196  RTVHYLALPSSTADVAQRTQGWLDALRAAGAPEPPVVEGGWTPRTGYLAARELV--ADRS  253
              +  LA    T D A R QGW D L  + +    ++EG+ T+ +GY +A EL   +D  
Sbjct  206  ERITHLAGNFETFDAAARVQGWRDELACSPSLPQQLLEGDFTAESGYRGAMELARSSDGL  265

Query  254  VTAVLCGNDDVAAGVMRAAREAGRHIPDDLSVAGFDDVPVAAFLAPALTTVRLDFEGLGR  313
             TA++ GND +A GV+ A  E G   PDD+S+ GFDD++ A  + PALTT+R DF  LG 
Sbjct  266  PTAIFAGNDLMALGVLAALAELGLSAPDDVSLVGFDDIAGADHFIPALTTIRQDFMTLGS  325

Query  314  T  314
            +
Sbjct  326  S  326