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PAthogenisity Island DataBase (PAI DB)

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Homologs of t4228 gene of NC_004631_P3

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) STY4523
( NP_458618.1 )

hypothetical protein

NC_003198
(Salmonella enterica CT18)

0.0

100

2) STBHUCCB_44750
( YP_005219899.1 )

hypothetical protein

NC_016832
(Salmonella enterica P-stx-12)

0.0

100

3) t4228
( NP_807830.1 )

hypothetical protein

NC_004631
(Salmonella enterica Ty2)

0.0

100

4) TY21A_21510
( YP_007928464.1 )

hypothetical protein

NC_021176
(Salmonella enterica Ty21a)

0.0

100

5) SPC_4389
( YP_002639887.1 )

hypothetical protein

NC_012125
(Salmonella enterica RKS4594)

0.0

6) EJP617_06930
( YP_005817261.1 )

hypothetical protein

NC_017445
(Erwinia sp. Ejp617)

8e-138

7) SPAB_05337
( YP_001591443.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

4e-132

8) Ser39006_1468
( YP_008521850.1 )

Integrating conjugative element, PFGI-1, ParB

NC_022268
(Serratia sp. ATCC 39006)

6e-131

9) PANA5342_4020
( YP_005197450.1 )

hypothetical protein

NC_016816
(Pantoea ananatis LMG 5342)

1e-129

10) PAGR_g3886
( YP_005994594.1 )

ParB-like protein

NC_017554
(Pantoea ananatis PA13)

8e-129

11) ECL_00399
( YP_003610914.1 )

hypothetical protein

NC_014121
(Enterobacter cloacae ATCC 13047)

2e-125

12) Pecwa_0608
( YP_003258039.1 )

hypothetical protein

NC_013421
(Pectobacterium wasabiae WPP163)

1e-119

13) Spro_0303
( YP_001476541.1 )

hypothetical protein

NC_009832
(Serratia proteamaculans 568)

2e-119

14) plu1032
( NP_928361.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

3e-118

15) Spro_4114
( YP_001480337.1 )

hypothetical protein

NC_009832
(Serratia proteamaculans 568)

3e-117

16) YpsIP31758_3746
( YP_001402700.1 )

hypothetical protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

6e-116

17) W5S_3554
( YP_006284496.1 )

Hypothetical protein

NC_017845
(Pectobacterium sp. SCC3193)

8e-115

18) SerAS9_0265
( YP_004503688.1 )

hypothetical protein

NC_015567
(Serratia plymuthica AS9)

2e-114

19) SerAS12_0265
( YP_004498736.1 )

hypothetical protein

NC_015566
(Serratia sp. AS12)

2e-114

20) SerAS13_0264
( YP_006023151.1 )

hypothetical protein

NC_017573
(Serratia sp. AS13)

2e-114

21) YPZ3_0293
( YP_003566465.1 )

hypothetical protein

NC_014029
(Yersinia pestis Z176003)

2e-113

22) CFSAN002050_22430
( YP_008262352.1 )

chromosome partitioning protein ParB

NC_021818
(Salmonella enterica CFSAN002050)

3e-111

23) NT01EI_0318
( YP_002931795.2 )

hypothetical protein

NC_012779
(Edwardsiella ictaluri 93-146)

3e-102

24) UMNK88_5004
( YP_006136644.1 )

hypothetical protein

NC_017641
(Escherichia coli UMNK88)

2e-94

• Sequence Alignments

1) STY4523 in NC_003198


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  868 bits (3288),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 599/599 (100%), Positives = 599/599 (100%), Gaps = 0/599 (0%)

Query  1    MAKAPllnlnnallQGAKESSAATTAAVAIMPTSEMPMVLTLDEVApnpdnprttrnpKY  60
            MAKAPLLNLNNALLQGAKESSAATTAAVAIMPTSEMPMVLTLDEVAPNPDNPRTTRNPKY
Sbjct  1    MAKAPLLNLNNALLQGAKESSAATTAAVAIMPTSEMPMVLTLDEVAPNPDNPRTTRNPKY  60

Query  61   DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL  120
            DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL
Sbjct  61   DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL  120

Query  121  FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ  180
            FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ
Sbjct  121  FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ  180

Query  181  GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD  240
            GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD
Sbjct  181  GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD  240

Query  241  SDFNEIFGHVCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK  300
            SDFNEIFGHVCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK
Sbjct  241  SDFNEIFGHVCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK  300

Query  301  LFGEPEPVASHLVDADRQTWQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQpdpdnd  360
            LFGEPEPVASHLVDADRQTWQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQPDPDND
Sbjct  301  LFGEPEPVASHLVDADRQTWQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQPDPDND  360

Query  361  ngdnddVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA  420
            NGDNDDVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA
Sbjct  361  NGDNDDVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA  420

Query  421  FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDD  480
            FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDD
Sbjct  421  FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDD  480

Query  481  IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ  540
            IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ
Sbjct  481  IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ  540

Query  541  FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSlrlirvirrlrelqrNMAAEQNDGRRHEH  599
            FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSLRLIRVIRRLRELQRNMAAEQNDGRRHEH
Sbjct  541  FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSLRLIRVIRRLRELQRNMAAEQNDGRRHEH  599

2) STBHUCCB_44750 in NC_016832


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  868 bits (3288),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 599/599 (100%), Positives = 599/599 (100%), Gaps = 0/599 (0%)

Query  1    MAKAPllnlnnallQGAKESSAATTAAVAIMPTSEMPMVLTLDEVApnpdnprttrnpKY  60
            MAKAPLLNLNNALLQGAKESSAATTAAVAIMPTSEMPMVLTLDEVAPNPDNPRTTRNPKY
Sbjct  1    MAKAPLLNLNNALLQGAKESSAATTAAVAIMPTSEMPMVLTLDEVAPNPDNPRTTRNPKY  60

Query  61   DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL  120
            DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL
Sbjct  61   DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL  120

Query  121  FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ  180
            FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ
Sbjct  121  FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ  180

Query  181  GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD  240
            GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD
Sbjct  181  GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD  240

Query  241  SDFNEIFGHVCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK  300
            SDFNEIFGHVCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK
Sbjct  241  SDFNEIFGHVCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK  300

Query  301  LFGEPEPVASHLVDADRQTWQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQpdpdnd  360
            LFGEPEPVASHLVDADRQTWQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQPDPDND
Sbjct  301  LFGEPEPVASHLVDADRQTWQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQPDPDND  360

Query  361  ngdnddVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA  420
            NGDNDDVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA
Sbjct  361  NGDNDDVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA  420

Query  421  FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDD  480
            FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDD
Sbjct  421  FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDD  480

Query  481  IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ  540
            IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ
Sbjct  481  IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ  540

Query  541  FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSlrlirvirrlrelqrNMAAEQNDGRRHEH  599
            FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSLRLIRVIRRLRELQRNMAAEQNDGRRHEH
Sbjct  541  FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSLRLIRVIRRLRELQRNMAAEQNDGRRHEH  599

3) TY21A_21510 in NC_021176


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  868 bits (3288),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 599/599 (100%), Positives = 599/599 (100%), Gaps = 0/599 (0%)

Query  1    MAKAPllnlnnallQGAKESSAATTAAVAIMPTSEMPMVLTLDEVApnpdnprttrnpKY  60
            MAKAPLLNLNNALLQGAKESSAATTAAVAIMPTSEMPMVLTLDEVAPNPDNPRTTRNPKY
Sbjct  1    MAKAPLLNLNNALLQGAKESSAATTAAVAIMPTSEMPMVLTLDEVAPNPDNPRTTRNPKY  60

Query  61   DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL  120
            DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL
Sbjct  61   DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL  120

Query  121  FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ  180
            FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ
Sbjct  121  FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ  180

Query  181  GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD  240
            GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD
Sbjct  181  GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD  240

Query  241  SDFNEIFGHVCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK  300
            SDFNEIFGHVCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK
Sbjct  241  SDFNEIFGHVCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK  300

Query  301  LFGEPEPVASHLVDADRQTWQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQpdpdnd  360
            LFGEPEPVASHLVDADRQTWQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQPDPDND
Sbjct  301  LFGEPEPVASHLVDADRQTWQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQPDPDND  360

Query  361  ngdnddVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA  420
            NGDNDDVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA
Sbjct  361  NGDNDDVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA  420

Query  421  FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDD  480
            FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDD
Sbjct  421  FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDD  480

Query  481  IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ  540
            IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ
Sbjct  481  IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ  540

Query  541  FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSlrlirvirrlrelqrNMAAEQNDGRRHEH  599
            FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSLRLIRVIRRLRELQRNMAAEQNDGRRHEH
Sbjct  541  FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSLRLIRVIRRLRELQRNMAAEQNDGRRHEH  599

4) t4228 in NC_004631


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  868 bits (3288),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 599/599 (100%), Positives = 599/599 (100%), Gaps = 0/599 (0%)

Query  1    MAKAPllnlnnallQGAKESSAATTAAVAIMPTSEMPMVLTLDEVApnpdnprttrnpKY  60
            MAKAPLLNLNNALLQGAKESSAATTAAVAIMPTSEMPMVLTLDEVAPNPDNPRTTRNPKY
Sbjct  1    MAKAPLLNLNNALLQGAKESSAATTAAVAIMPTSEMPMVLTLDEVAPNPDNPRTTRNPKY  60

Query  61   DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL  120
            DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL
Sbjct  61   DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL  120

Query  121  FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ  180
            FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ
Sbjct  121  FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ  180

Query  181  GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD  240
            GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD
Sbjct  181  GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD  240

Query  241  SDFNEIFGHVCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK  300
            SDFNEIFGHVCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK
Sbjct  241  SDFNEIFGHVCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK  300

Query  301  LFGEPEPVASHLVDADRQTWQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQpdpdnd  360
            LFGEPEPVASHLVDADRQTWQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQPDPDND
Sbjct  301  LFGEPEPVASHLVDADRQTWQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQPDPDND  360

Query  361  ngdnddVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA  420
            NGDNDDVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA
Sbjct  361  NGDNDDVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA  420

Query  421  FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDD  480
            FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDD
Sbjct  421  FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDD  480

Query  481  IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ  540
            IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ
Sbjct  481  IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ  540

Query  541  FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSlrlirvirrlrelqrNMAAEQNDGRRHEH  599
            FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSLRLIRVIRRLRELQRNMAAEQNDGRRHEH
Sbjct  541  FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSLRLIRVIRRLRELQRNMAAEQNDGRRHEH  599

5) SPC_4389 in NC_012125


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  863 bits (3270),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 596/599 (99%), Positives = 597/599 (99%), Gaps = 0/599 (0%)

Query  1    MAKAPllnlnnallQGAKESSAATTAAVAIMPTSEMPMVLTLDEVApnpdnprttrnpKY  60
            MAKAPLLNLNNALLQGAKESSAATTAAVAIMPTSEMPMVLTLDEVAPNPDNPRTTRNPKY
Sbjct  1    MAKAPLLNLNNALLQGAKESSAATTAAVAIMPTSEMPMVLTLDEVAPNPDNPRTTRNPKY  60

Query  61   DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL  120
            DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL
Sbjct  61   DEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAILRELFAETQDERFYRFHAL  120

Query  121  FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ  180
            FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ
Sbjct  121  FKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIHEETLGRTVTLRELADLLGQQ  180

Query  181  GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD  240
            GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD
Sbjct  181  GYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVNLLNLRADALKIWQQYSVMTETD  240

Query  241  SDFNEIFGRVCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK  300
            SDFNEIFG+VCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK
Sbjct  241  SDFNEIFGHVCTQFDDPEVYSFEMFRDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRK  300

Query  301  LFGEPEPVASHLVDADRQIWQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQpdpdnd  360
            LFGEPEPVASHLVDADRQ WQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQPDPDND
Sbjct  301  LFGEPEPVASHLVDADRQTWQSTASLPGTANDENQQGGSSLKPKLNNAPVLPKQPDPDND  360

Query  361  ngdnddVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA  420
            NGDNDDVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA
Sbjct  361  NGDNDDVTGEWFGSCGSPRLPKAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASA  420

Query  421  FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWAIPALQDD  480
            FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIW IPALQDD
Sbjct  421  FAGAQVGLTADTPSDAVSIASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDD  480

Query  481  IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ  540
            IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ
Sbjct  481  IEHLQDMAYRLAYELAEAMGCEVHVSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQ  540

Query  541  FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSlrlirvirrlrelqrNMAAEQNDGRRHEH  599
            FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSLRLIRVIRRLRELQRNMAAEQNDGRRHEH
Sbjct  541  FNMFMFCLNFFGSQSAGDTPVFDDVHVVKSLRLIRVIRRLRELQRNMAAEQNDGRRHEH  599

6) EJP617_06930 in NC_017445


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  484 bits (1824),  Expect = 8e-138, Method: Compositional matrix adjust.
 Identities = 293/545 (54%), Positives = 403/545 (74%), Gaps = 35/545 (6%)

Query  32   LPVTEMAMVLTLDQLCPNPDNPRTGRNPRYEEIKASIRARGLDSIPKVTRDPD-GEQVYI  90
            +P +EM+MVLTLD++ PNPDNPRT RNP+Y+EIK SIRARGLD++PKVT++PD     YI
Sbjct  31   MPTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPYI  90

Query  91   FSDGGNTRYQILCELWQETGDERFHRIHTIFKPWPGRLKCLVGHLAENEVRGDLAYIEKA  150
            FSDGGNTRY IL EL  ET DERF R+H++FKPWPGRL CLVGHLAEN+VRGDL++I+KA
Sbjct  91   FSDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDKA  150

Query  151  FGVHKARIIYEEQLGRNVTLRELSDLLGKEGYPIDKSSVSRMEDTLNYLYPHMPRLFDSG  210
            +G+ KAR I EE LGR VTLREL+DLLG++GYPI++S +SRME+T++YLYP MP L+ SG
Sbjct  151  LGIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVSG  210

Query  211  MSRGQAIPLLSLRSSAMKVWKSFSSDVEPGCTLDDVFGSVCRVFDEPDNYSLDVFRDELI  270
            +++ Q + LL+LR+ A+K+W+ +S   E +  ++++FG VC  FD+P+ YS+++FRDE+I
Sbjct  211  LGKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEFI  270

Query  271  GQLVKALPHPSLNYDRWLIELDPKEQKRREQFGeppplpeltpvpeRNGARDRSEPTVSV  330
            G LV+ LPHPSLNYDRWL+ELDPK +++R  FGEP P++        ++ R+  ++T S 
Sbjct  271  GMLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPEPVASHLV----DADRQTWQSTAS-  325

Query  331  LPSDPT--TQTPVTSLRSGTLTTPGRPEPVSDLAESSALPYST---FVNAGSQ--PRSEI  383
            LP+ +    Q   +SL++    +P  P       +++     T   F + GS   P++E+
Sbjct  326  LPGTANDENQQGGSSLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKAEV  385

Query  384  QHDFLGGAPVISGDGVSH--------GDV---ETDFTD----------SEAVSLVSALGE  422
            Q+DFLGG++V++GD +++        G++    + F++          S+AVS+ S +  
Sbjct  386  QNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEMPG  445

Query  423  HD-EPTTAPTSSVAFAANGLEPVSDIWYIPALQDDIEHLQDMAYRLAFEIAEAMGCQDAV  481
                PT ++ SSV FA  GLEPV+DIW IPALQDDIEHLQDMAYRLA+E+AEAMGC+  V
Sbjct  446  LSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEVHV  505

Query  482  SEDKHLKSAGFTVAETAGEFGLFLAGLSGHIPGQPFNTFMFCMNFLGSQEPTDTPVFDDV  541
            SEDK+  +AGF+V+E +GEF+LFLAGLSGH+P + FN FMFC+NF+GSQ + DTPVFDDV
Sbjct  506  SEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPVFDDV  565

Query  542  LVVKT  546
             VVK+
Sbjct  566  HVVKS  570

7) SPAB_05337 in NC_010102


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  465 bits (1752),  Expect = 4e-132, Method: Compositional matrix adjust.
 Identities = 277/532 (53%), Positives = 382/532 (72%), Gaps = 39/532 (7%)

Query  34   PVNEMAMVLTLDQLRPNPDNPRKGRNPRFEEIKASVRARGLDSIPKVTRDPD-GDDVYIF  92
            P +EM+MVLTLD++ PNPDNPR  RNP+++EIK S+RARGLD++PKVT++PD  +  YIF
Sbjct  32   PTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPYIF  91

Query  93   SDGGNTRYQILCDLWQETGDERFYRVHTIFKPWPGRLKCLVGHLAENEVRGDLTYIEKAF  152
            SDGGNTRY IL +L  ET DERFYR H++FKPWPGRL CLVGHLAEN+VRGDLT+I+KA+
Sbjct  92   SDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDKAL  151

Query  153  GVHKARVIYEEQLGRSVTLRELSDLLGKEGYPIDNSSVSRMEDTLNYLYPHMPQLLESGM  212
            G+ KAR I EE LGR+VTLREL+DLLG++GYPI+NS +SRME+T++YLYP MP+LL SG+
Sbjct  152  GIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVSGL  211

Query  213  SRGQATPLLSLRSSAMKVWKSFSGDVNPECSLDDVFGAVCRCFDEPESYALDIFRDEFIG  272
            ++ Q   LL+LR+ A+K+W+ +S   + +  ++++FG VC  FD+PE Y++++FRDEFIG
Sbjct  212  GKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEFIG  271

Query  273  QLVKALPHPSLNYDRWLIELDPREQKRREQFGEppplpaptpaSEQSGGRERTTPPVTTL  332
             LV+ LPHPSLNYDRWL+ELDP+ +++R  FGEP P+++    +++   +  ++ P T  
Sbjct  272  MLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPEPVASHLVDADRQTWQSTASLPGT--  329

Query  333  PADTSSQPPVTGLRSGTLTTPGRPEAVPELQDNTALP-------GGMSVGSEPRREVQND  385
             A+  +Q   ++L++    +P  P      +DN           G+ +    P+ EVQND
Sbjct  330  -ANDENQQGGSSLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKAEVQND  388

Query  386  LFGGNPVITGQTENPDNDGEWQFKSDVNANAL-VSAFGEQDE------------------  426
            ++GG +V+TG+       +E +F +D    A+  SAF+  +                   
Sbjct  389  FLGGPSVLTGDVIP----DEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEMP  444

Query  427  -----TSTPSVSSVAFAATGLEPVNDIWHISALQDDIEHLQDMAYRLTFEIAEAMGCADC  481
                  + P++SSV FA  GLEPV DIW I+ALQDDIEHLQDMAYRL++E+AEAMGC   
Sbjct  445  GLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEVH  504

Query  482  VREDKDHHSTGFSISENASEFTLFLAGLSGSLPNKQFNMFMFCLNFFGSQEP  533
            V EDK+  ++GFS+SE+++EF+LFLAGLSG +PNKQFNMFMFCLNFFGSQ +
Sbjct  505  VSEDKNASAAGFSVSEHGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSA  556

8) Ser39006_1468 in NC_022268


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  461 bits (1737),  Expect = 6e-131, Method: Compositional matrix adjust.
 Identities = 272/548 (50%), Positives = 382/548 (70%), Gaps = 40/548 (7%)

Query  33   VPPVSEMAMVLTLDQLRPNPDNPRTSRNPRFNDIKSSIRARGLDSIPKVTRDPD-GEDVY  91
            + P SEM+MVLTLD++ PNPDNPRT+RNP++++IK SIRARGLD++PKVT++PD     Y
Sbjct  30   IMPTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPY  89

Query  92   IFSDGGNTRYQILCELWQETGEDRFYRIQTIVKPWPGRLKCLIGHLAENEVRGDLTYLEK  151
            IFSDGGNTRY IL EL  ET ++RFYR++++ KPWPGRL CL+GHLAEN+VRGDLT+++K
Sbjct  90   IFSDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDK  149

Query  152  ALGIHNARAISEKQLGRNVSLRELSDLLNQEGYPIHNSSISRMEDTLKYLYPYMPDVLKS  211
            ALGI +ARAI E  LGR V+LREL+DLL Q+GYPIHNS ISRME+T+ YLYP+MP++L S
Sbjct  150  ALGIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVS  209

Query  212  GLSRGQVMPLLALRSAAEKTWSEYCTSVDTTQTYDDVFRKTSESFNNPDLYSLEMFRDEL  271
            GL++ Q++ LL LR+ A K W +Y    +T   ++++F      F++P++YS+EMFRDE+
Sbjct  210  GLGKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEF  269

Query  272  IGELLKALPHPSLNYDRWLIELDPKEQQRREMFGDPPKPPVVIYQESPQPASSGKAITQL  331
            IG L++ LPHPSLNYDRWL+ELDPK +++R +FG+P   PV      ++  +  ++ + L
Sbjct  270  IGMLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPE--PVASHLVDADRQTW-QSTASL  326

Query  332  PPQSDGEPHLTG--LRSGTLTGAGTRPEPSPDNKAELLVPTLPSSMQTLMDGDQKRPTDR  389
            P  +++E +  G  L++  L  A   P  +  ++ +     + +      ++       +
Sbjct  327  PGTANDENQQGGSSLKP-KLNNAPVLPKQPDPDNDNGDNDDVTGE---WFGSCGSPRLPK  382

Query  390  TETQPDLYGGSTVISGQ----------------------TEARPAFNTDNLFSALSESSD  427
            +E Q D+ GG++V++G+                      + A+ ++ +D    A+S +S+
Sbjct  383  AEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASE  442

Query  428  -------ETDRSVSSVAFAAVGLEPVNDIWHIPALQDDIEHLQDMAYRLAFELAEAMGCT  480
                    T+ ++SSV FA VGLEPV DIW IPALQDDIEHLQDMAYRLA+ELAEAMGC 
Sbjct  443  MPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCE  502

Query  481  DSISEDKTEHSAGYSASAQSSNEFVLFLAGMTGSFSSEPFNMFMFCLNFFGSPVISDQPV  540
              +SEDK   +AG+S S +++ EF LFLAG++G  ++  FNMFMFCLNFFGS   +D PV
Sbjct  503  VHVSEDKNASAAGFSVSEHGG-EFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPV  561

Query  541  FDDLHVVK  548
            FDD+HVVK
Sbjct  562  FDDVHVVK  569

9) PANA5342_4020 in NC_016816


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  457 bits (1720),  Expect = 1e-129, Method: Compositional matrix adjust.
 Identities = 275/534 (52%), Positives = 406/534 (77%), Gaps = 25/534 (4%)

Query  32   LPVSEMAMVLTLDQLRPNPDNPRKSRNPRFDEIKASIRARGLDSIPKVTRDPE-GDDVYI  90
            +P SEM+MVLTLD++ PNPDNPR +RNP++DEIK SIRARGLD++PKVT++P+  +  YI
Sbjct  31   MPTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPYI  90

Query  91   FSDGGNTRYQILCELWQETGEERFYRVHTIFKPWPGRLKCLVGHLAENEVRGDLTYLDKA  150
            FSDGGNTRY IL EL  ET +ERFYR H++FKPWPGRL CLVGHLAEN+VRGDLT++DKA
Sbjct  91   FSDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDKA  150

Query  151  LGIHNARTIQEELLGHsvslrelsellnleGYPIHASSISRMEDTLKYLYPSMPELLESG  210
            LGI +AR+I+EE LG++V+LREL++LL  +GYPIH S ISRME+T+ YLYP MPELL SG
Sbjct  151  LGIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVSG  210

Query  211  LSRSQVLPLLNLRSLAEKVWLKFGLAVDTTDNFQSVFSQTCSQFNDPDSFTLEHFRDEFI  270
            L+++Q++ LLNLR+ A K+W ++++  +T  +F+ +F++ C+QF+DP+ +++E FRDEFI
Sbjct  211  LGKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEFI  270

Query  271  GHLIKALPHPSLNYDRWLIELDPKEQKRREQFGEP-PAMPSLTLSPVPERSGGHTAPLTV  329
            G L++ LPHPSLNYDRWL+ELDPK +++R  FGEP P  + L  +    + +  + P T 
Sbjct  271  GMLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPEPVASHLVDADRQTWQSTASLPGTA  330

Query  330  LPDDTTSSTPVtglrsgtltgstrPEPAPEQAGHTVLPDS--SGISAGSLPRREIQNDLF  387
              ++  +++++    + +   + +P+P  +++++  + +   ++ ++  LP+ E+QND++
Sbjct  331  NDENQQGGSSLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKAEVQNDFL  390

Query  388  GGRPVITGDGVNNN----AEHGMGLISPGSLSLAS-AFGEQDDAESMSAG----------  432
            GG +V+TGD + ++    ++ G   +S+++++ A  ++  +  ++++S +          
Sbjct  391  GGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEMPGLSLLP  450

Query  433  ------SVSFAETGLEPVSDIWLIPAMQDDVEHLQDMAYRLVYEIAEGMGCVSDISEDKS  486
                  SV FA+ GLEPV+DIW+IPA+QDD+EHLQDMAYRL YE+AE+MGC  ++SEDK+
Sbjct  451  TEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEVHVSEDKN  510

Query  487  PESAGFSVSGGSREFSLFLAGLSGRLPNQQCNMFMFCLNFFGSQEPADTPVFDD  540
            + +AGFSVS  + EF+LFLAGLSG++PN+Q NMFMFCLNFFGSQ ++DTPVFDD
Sbjct  511  ASAAGFSVSEHGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPVFDD  564

10) PAGR_g3886 in NC_017554


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  454 bits (1710),  Expect = 8e-129, Method: Compositional matrix adjust.
 Identities = 280/539 (52%), Positives = 403/539 (75%), Gaps = 25/539 (4%)

Query  32   LPVSEMAMVLTLDQLRPNPDNPRKSRNPRFDEIKASIRARGLDSIPKVTRDPE-GDDVYI  90
            +P SEM+MVLTLD++ PNPDNPR +RNP++DEIK SIRARGLD++PKVT++P+  +  YI
Sbjct  31   MPTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPYI  90

Query  91   FSDGGNTRYQILCELWQETGEERFYRLHTIFKPWPGRLKCLVGHLAENEVRGDLTYLDKA  150
            FSDGGNTRY IL EL  ET +ERFYR+H++FKPWPGRL CLVGHLAEN+VRGDLT++DKA
Sbjct  91   FSDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDKA  150

Query  151  LGVHNARTIQEELLGHSVSLRELSDLLNLEGYPIHASSISRMEDTLKYLYPSMPELLESG  210
            LG+ +AR+I+EE LG++V+LREL+DLL  +GYPIH S ISRME+T+ YLYP MPELL SG
Sbjct  151  LGIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVSG  210

Query  211  LSRTQVIPLLNLRSLAEKVWLKFQLAEDTVDNFQSVFSQTCSLFNDPDSYTLEHFRDEFI  270
            L++ Q++ LLNLR+ A K+W ++ +  +T  +F+ +F++ C+ F+DP+ Y++E FRDEFI
Sbjct  211  LGKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEFI  270

Query  271  GHLIKALPHPSLNYDRWLIELDPKEQKRREQFGEPPAMPPLTLTRLSEGSGGKAP-PVTV  329
            G L++ LPHPSLNYDRWL+ELDPK +++R  FGEP ++++  +    +   + A+ P T 
Sbjct  271  GMLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPEPVASHLVDADRQTWQSTASLPGTA  330

Query  330  LPDDPTAVTPVtglrsgtltgstrPEPAPEPAGLTVLPDS--TGISAGSLPRSEIQNDLF  387
              ++  + +++    + +   + +P+P  + ++   + +    + ++  LP++E+QND++
Sbjct  331  NDENQQGGSSLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKAEVQNDFL  390

Query  388  GGRSVITGDGVSTS----SEHGADLVSSGS-HSLVSAFSEHDDSAPVSTG----------  432
            GG SV+TGD ++      ++ G   VS+++  +   +++ +  S +VS +          
Sbjct  391  GGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEMPGLSLLP  450

Query  433  ------SVSFAETGLEPVSDIWLIPAMQDDVEHLQDMAYRLVYEIAEGMGCVSDISEDKS  486
                  SV FA+ GLEPV+DIW+IPA+QDD+EHLQDMAYRL YE+AE+MGC  ++SEDK+
Sbjct  451  TEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEVHVSEDKN  510

Query  487  PESAGFSVsggsrefslflsglsgclPNQQCNMFMFCLNFFGSQKPADTPVFDDVMVVK  545
            + +AGFSVS  + EF+LFL+GLSG +PN+Q NMFMFCLNFFGSQ ++DTPVFDDV VVK
Sbjct  511  ASAAGFSVSEHGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPVFDDVHVVK  569

11) ECL_00399 in NC_014121


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  443 bits (1668),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 276/540 (52%), Positives = 384/540 (72%), Gaps = 27/540 (5%)

Query  32   LPVSEMAMVLTLDQLRPNPDNPRKSRNPHFDEIKASIRACGLVQVPKVTRDPD-GEDVYI  90
            +P SEM+MVLTLD++ PNPDNPR +RNP +DEIK SIRA GL  VPKVT++PD     YI
Sbjct  31   MPTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPYI  90

Query  91   FSDGGNTRYQILCELWQETGDERFYRVHTIFKPWPGRLKCLVGHLAENEVRGDLSYIDKA  150
            FSDGGNTRY IL EL  ET DERFYR H++FKPWPGRL CLVGHLAEN+VRGDL++IDKA
Sbjct  91   FSDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDKA  150

Query  151  FGVHSARAIQEELMGRPVTLRELSDLLNLEGYPIDYSTISRMEDTIKYLWPCIPNLLNSG  210
            +G+  ARAI+EE +GR VTLREL+DLL  +GYPI+ S ISRME+T+ YL P +P+LL SG
Sbjct  151  LGIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVSG  210

Query  211  LARLQVLSLLRIRSQAGKVWSQFAHESSPQCSFDQVFEASCQGFDDPDSYAYETFRDEFI  270
            L++ Q+++LL +R++A K+W Q++  +  +  F+++F   C  FDDP+ Y++E FRDEFI
Sbjct  211  LGKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEFI  270

Query  271  GQLVKALPHPSLNYDRWMIELDPREQKRREQFGEppplpvltppQEKAAGREPPEPQVTV  330
            G LV+ LPHPSLNYDRW++ELDP+ +++R  FGEP P++      ++ + +  +    T 
Sbjct  271  GMLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPEPVASHLVDADRQTWQSTASLPGTA  330

Query  331  LPPDTASETPVTGLRSGTLTTPGRpepapelpadaelpVNALMTAGSE--PRREVQNDLF  388
               +  + +++    + +   P +P+P  +   + ++  + + + GS   P+ EVQND++
Sbjct  331  NDENQQGGSSLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKAEVQNDFL  390

Query  389  GGRPVISGETADPDSISLPDFSPDTL-MSAFGEENaspaasvssvafaaTG---------  438
            GG +V++G+    +   +PD +  ++  SAF+  + + +A  +S A + ++         
Sbjct  391  GGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEMPGLSLLP  450

Query  439  --------------LEPVSDIWHIPALQDDIEHLQDMAYRLVFEIAEAMGCADNVREDKN  484
                          LEPV+DIW IPALQDDIEHLQDMAYRL +E+AEAMGC  +V EDKN
Sbjct  451  TEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEVHVSEDKN  510

Query  485  PQSAGFAVSETGSEFVLFLAGLSGSLPNRQFNMFMFCLNFFGSQSPADMAVFDDITVVKT  544
            + +AGF+VSE G+EF LFLAGLSG +PN+QFNMFMFCLNFFGSQS++D +VFDD+ VVK+
Sbjct  511  ASAAGFSVSEHGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPVFDDVHVVKS  570

12) Pecwa_0608 in NC_013421


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  423 bits (1593),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 276/547 (51%), Positives = 384/547 (71%), Gaps = 34/547 (6%)

Query  29   VLPVSEMAMVLTLDELRPNPDNPRTSRNPKYADIKASIRMRGLDSLPKVTRDPD-GDDIY  87
            ++P SEM+MVLTLDE+ PNPDNPRT+RNPKY +IK SIR RGLD++PKVT++PD  +  Y
Sbjct  30   IMPTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPY  89

Query  88   IFSDGGNTRYQILCELYQETGDERFYRIHTIFKPWPGRLQCVIGHLAENEVRGDLTYIEK  147
            IFSDGGNTRY IL EL+ ET DERFYR+H++FKPWPGRL+C++GHLAEN+VRGDLT+I+K
Sbjct  90   IFSDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDK  149

Query  148  AFGIHKARTIWEEQLGRSVTLRELSELLNQQGYPIDNSSISRMEDTLKYLHPHLPNLLNS  207
            A+GI KAR+I EE LGR+VTLREL++LL QQGYPI+NS ISRME+T+ YL P +P+LL S
Sbjct  150  ALGIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVS  209

Query  208  GlarvrvlpllalrsaaEKTWAKHQMQVEHESVFDDVFGHACQQFDDPDRYSLEMFRDEL  267
            GL++ +++ LL LR+ A K W +  +  E +S F+++FGH C QFDDP+ YS+EMFRDE+
Sbjct  210  GLGKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEF  269

Query  268  IGELLKALPHPSLNYDRWLIELDPKEQQRRELFGEP-PAPPVVQEPIRQPLKENITQLPP  326
            IG L++ LPHPSLNYDRWL+ELDPK +++R LFGEP P ++ + ++ RQ   ++ + LP 
Sbjct  270  IGMLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPEPVASHLVDADRQTW-QSTASLPG  328

Query  327  QTGPENPVTGLRSGTLVGGVTRPEPAPGNAPETGLTPDAGMQPID--AGIASTSPYRAEL  384
             +  EN   G   ++L   +  +   P ++       D +    +  ++ +S    +AE+
Sbjct  329  TANDENQQGG---SSLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKAEV  385

Query  385  QPDLYGGQTVIGGE-------------TVSPMGNGFSQTSL----------MSALSENRD  421
            Q D+ GG +V+ G+              ++  +++F+ + +          +S  SE  +
Sbjct  386  QNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEMPG  445

Query  422  SALLEEGHvsssssvsFAATGLEPVADIWHIPALQDDIEHLQDMSYRLAFELAEAMGCAD  481
             +LL      SS    FA  GLEPV+DIW IPALQDDIEHLQDM+YRLA+ELAEAMGC  
Sbjct  446  LSLLPTEPALSSVE--FANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEV  503

Query  482  DISEAKRWDQAGYTTSDTNNNEFVLLLAGLTGEDRELPFNTFGFCLNFLGFPQKSGSPVL  541
            ++SE K    AG++ S+ +  EF L+LAGL+G+  +  FN F FCLNF+G    +++PV+
Sbjct  504  HVSEDKNASAAGFSVSE-HGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPVF  562

Query  542  HDVHAVK  548
            +DVH VK
Sbjct  563  DDVHVVK  569

13) Spro_0303 in NC_009832


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  423 bits (1592),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 263/547 (49%), Positives = 394/547 (73%), Gaps = 38/547 (6%)

Query  36   PVSEMPLVLTLDEVNPNPDNPRTSRNPKYEEIKSSIRARGLDTVPKVTRDPERPELGYFF  95
            P SEMP+VLTLDEV PNPDNPRT+RNPKY+EIK SIRARGLDTVPKVT++P+ P   Y+F
Sbjct  32   PTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPYIF  91

Query  96   SDGGNTRYAILSELWQETGEERFYRFSCVFKPWPGRLSCVIGHLAENEVRGDLSFIEKAF  155
            SDGGNTRYAIL EL  ET +ERFYRF  +FKPWPGRL C++GHLAEN+VRGDL+FI+KA+
Sbjct  92   SDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDKAL  151

Query  156  GIRQARELYEAQLGKPVSLRELSTLLTAEGYSVHNSSISRMEDAVQYLYPYMPHLLETGL  215
            GI++AR + E  LG+ V+LREL+ LL  +GY++HNS ISRME++V+YLYP+MP+LL +GL
Sbjct  152  GIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVSGL  211

Query  216  GRPQILQLLAMRSHAETTWQKHCITQDSDQPFDTVFGDVCRHFDSPEVYSLDMFRDELIG  275
            G+PQI++LL +R++A   WQ+  +  ++D  F+ +FG+VC +FD PEVYS++MFRDE+IG
Sbjct  212  GKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEFIG  271

Query  276  ALIKALPHPLLNYDRWLLELDPKEQNRRKHLGEPTSTPELPDKASTVVLAPELQQ-EENG  334
             L++ LPHP LNYDRWLLELDPK +N+RK +GE       P+  ++ ++ ++ Q  +  +
Sbjct  272  MLVNVLPHPSLNYDRWLLELDPKARNQRKLFGE-------PEPVASHLVDADRQTWQSTA  324

Query  335  GLPST-ESEVPGGGSSL---VLDSALL---ESAGDSDNESQGVQDE--EIPSSQTEPRVE  385
            +LP+T + E   GGSSL   + ++++L     +++ + ++++V +E     +S   P+ E
Sbjct  325  SLPGTANDENQQGGSSLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKAE  384

Query  386  TQPDLYGASSVLSGDV-----ETLLDGENTTVNDPLLPGSH------APHNNIETQPK--  432
             Q D+ G++SVL+GDV     + + D+ N +V+ + ++G++      +P + +   +   
Sbjct  385  VQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEMP  444

Query  433  -----QavapvvevpfaevGLEPVSSIWAISALQDDIEHLQVITFRLAFELAEVAGCEAE  487
                  + +++  V FA+VGLEPV+ IW I+ALQDDIEHLQ +++RLA+ELAE  GCE +
Sbjct  445  GLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEVH  504

Query  488  IKADKADLQAAGYALTAERPSRFTALLLTLAGNNPDGA-GTSSLNEALIGSENAADWPLL  546
            +  DK    AAG++++ E+ + F+ +L  L+G+ P+       +   ++GS++A+D P++
Sbjct  505  VSEDKNA-SAAGFSVS-EHGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPVF  562

Query  547  DDIHAVK  553
            DD+H VK
Sbjct  563  DDVHVVK  569

14) plu1032 in NC_005126


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  419 bits (1577),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 259/547 (48%), Positives = 381/547 (70%), Gaps = 33/547 (6%)

Query  27   VLPMAEMPMVLTLDELQPNPDNPRLSRNPRFDDIKASVRARGLDSVPKVTRDPEDSGNVY  86
            ++P +EMPMVLTLDE+ PNPDNPR +RNP++D+IK S+RARGLD+VPKVT++P+ +G+ Y
Sbjct  30   IMPTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPY  89

Query  87   IFSDGGNTRYQILCELWKETGEERFFRIPCLFKPWPGRLQCVIGHLAENDVRGDLTFIEK  146
            IFSDGGNTRY IL EL  ET +ERF+R+  LFKPWPGRL+C++GHLAENDVRGDLTFI+K
Sbjct  90   IFSDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDK  149

Query  147  ALGVFNASSMHEKCLGRPISQRELTDLLKQEGFPISQTSISQMHNTVQYLYPHMPNLLIS  206
            ALG+ +A ++HE  LGR ++ REL+DLL Q+G+PI ++ IS+M++TV+YLYP MP+LL+S
Sbjct  150  ALGIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVS  209

Query  207  GMGRPQAVNILSLRVDAQKTWNSFSSEASCGKDFDSVFGEVCQRFDNPELYSFDMLRDEL  266
            G+G+PQ VN+L+LR DA K W+ +S  +  + DF+ +FG+VC +FD+PE+YSF+M+RDE+
Sbjct  210  GLGKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEF  269

Query  267  IGELIKALPHPALNYDRWLLELDPKERNRRQLFGEPPPIAEHLRDADRQ----AAEVPEK  322
            IG L++ LPHP+LNYDRWLLELDPK RN+R+LFGEP P+A HL DADRQ    +A +P  
Sbjct  270  IGMLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPEPVASHLVDADRQTWQSTASLPGT  329

Query  323  SVPLVTKSAACV------SAVEPESHGDVIECQEDKKTEE--YEVCP----PKVEVQPDV  370
            +     ++++ +      ++V P   +   +  ++       +  C     PK EVQ D 
Sbjct  330  ANDENQQGGSSLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKAEVQNDF  389

Query  371  YETRPTLSSELST-----IQDKEDI---APLVSAPLSQIVPSTLSEFNHCLPTPPQTSLL  422
                + L++++       I D  +I   A+  +++   + + T S+     +  P  SLL
Sbjct  390  LGGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEMPGLSLL  449

Query  423  TEPTPSDGLSFAQTGLEPVSDIWSISPVRDDIEHLQDMAFRLAFELAEEMGGADELEEAK  482
                +  ++ FA+ GLEPV+DIW I++++DDIEHLQDMA+RLA+ELAE MG   ++ E K
Sbjct  450  PTEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEVHVSEDK  509

Query  483  DTACEMGYRLAYSHTASRFVQVLLSLTGESDHNGELADTGIGMLGTWFVGSDK--DTPVL  540
            +++   G+ +  S+ ++ F   L +L+G+  ++    +  + M+   F GS+   DTPV+
Sbjct  510  NASAA-GFSV--SEHGGEFALFLAGLSGHVPNK----QFNMFMFCLNFFGSQSAGDTPVF  562

Query  541  PDVAVVK  547
             DV VVK
Sbjct  563  DDVHVVK  569

15) Spro_4114 in NC_009832


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  416 bits (1564),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 260/548 (48%), Positives = 382/548 (70%), Gaps = 35/548 (6%)

Query  35   LPVSEIPLVLTLDQLSVSPYNPRISRNPEYDEIKAGIRVRGLRTVPLVTLDPEQPELGYF  94
            +P SE+P+VLTLD+++ +P NPR +RNP YDEIK +IR RGL TVP VT +P+ P   Y+
Sbjct  31   MPTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPYI  90

Query  95   FSDGGNTRYSILQELWQETGDERFYRISCVFKPWPGRLSCLLGHLAENEQRGDLAFIEKA  154
            FSDGGNTRY+IL+EL  ET DERFYR+  +FKPWPGRL CL+GHLAEN+ RGDL+FI+KA
Sbjct  91   FSDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDKA  150

Query  155  LGIRDARALYEETLGKAVSLRELSSLMGADGYPVHFSSISRMEDTVKYLYPFMPTLLKSG  214
            LGI+ ARA+ EETLG++V+LREL+ L+G +GYP+H S ISRME+TV YLYPFMP LL SG
Sbjct  151  LGIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVSG  210

Query  215  LGAPQIRHLLALRAEAEKTWQEHSVTVEVLEPFDSVFGKVCNQFDDAEIYSLDMFRDELI  274
            LG PQI +LL LRA+A K WQ+ SV  E    F+ +FG VC QFDD+E+YS++MFRDE+I
Sbjct  211  LGKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEFI  270

Query  275  GALINALPHPLLNYDRWLLELDPKEQNRRKHLGEPAPALAPELSGKGNTVELVPALQQED  334
            G L+N LPHP LNYDRWLLELDPK +N+RK +GEP P  +  + +  +T +  ++L    
Sbjct  271  GMLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPEPVASHLVDADRQTWQSTASL----  326

Query  335  TSGQTEPDVRGGGASLVLDSALHESTGAADEESQDSQEGETPTPQTE----------PRI  384
             +G ++ + + GG+S  L + L+++   + +   D+++G+      E          P+ 
Sbjct  327  -PGTANDENQQGGSS--LKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKA  383

Query  385  ETQPDLYGASSVLSGDI-----ETVLDGENDTVNEYPLPGTHESTAPHSNTETQPKQGVT  439
            E Q D+ G++SVL+GD+     + + D+ N +V+  +++G++ + ++++ +++ +  +  
Sbjct  384  EVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEM  443

Query  440  PA----------AEVPFAEVGLEPVSSIWAIPALQDDIEHLQVITFRLAFELAEVAGCEA  489
            P+          + V FA+VGLEPV+ IW IPALQDDIEHLQ +++RLA+ELAE  GCE 
Sbjct  444  PGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEV  503

Query  490  EIKADKaalqsagyalaaERPSRFTALLLTLAGNNPDGA-GTSSLNEALIGSENPADWPL  548
            ++  DK    SA+    +E+ + F+ +L  L+G+ P+       +   ++GS++++D P+
Sbjct  504  HVSEDK--NASAAGFSVSEHGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPV  561

Query  549  LDDIHAVK  556
            +DD+H VK
Sbjct  562  FDDVHVVK  569

16) YpsIP31758_3746 in NC_009708


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  411 bits (1547),  Expect = 6e-116, Method: Compositional matrix adjust.
 Identities = 242/546 (45%), Positives = 366/546 (68%), Gaps = 48/546 (8%)

Query  17   LPVSEMAMVLTLDQLRPNPDNPRATRNPKFEDIKASIRSRGLDSIPKVTRDPD-GEDAYI  75
            +P SEM+MVLTLD++ PNPDNPR+TRNPK+++IK SIR+RGLD++PKVT++PD    +YI
Sbjct  31   MPTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPYI  90

Query  76   FSDGGNTRYQILCELWQETGDDRFYHIHSIFKPWPGRLQCVIGHLAENEIRGDLTYIEKA  135
            FSDGGNTRY IL EL  ET D+RFY++H++FKPWPGRL+C++GHLAEN++RGDLT+I+KA
Sbjct  91   FSDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDKA  150

Query  136  LGIHKARILWEEQQGRGVSLRELSEFLNQQGYPIHNSSISRMEDTLKYLYPCLPDLLDAG  195
            LGI KAR + EE  GR V+LREL+++L QQGYPIHNS ISRME+T+ YLYP +P+LL +G
Sbjct  151  LGIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVSG  210

Query  196  LSRSQVIPLITLRSAAEKMWSRHVVATDCSKTFEAVFSAVCTSFNCPDLYSLDMFRDELI  255
            L+++Q++ L+ LR+ A K+W +  V T+    F+ +F+ VCT F+ P++YS++MFRDE+I
Sbjct  211  LGKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEFI  270

Query  256  GELLKALPHPLLNYDRWLIELDPKEQQRRELYGDPLPPPSALTPDANSVGISGAPLTKLP  315
            G L++ LPHP LNYDRWL+ELDPK +++R L+G+P P +S L         S A+L    
Sbjct  271  GMLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPEPVASHLVDADRQTWQSTASLPG-T  329

Query  316  PQPNGAVPEVGLRSGTLTGPLTKPESAPDNRGDTSVNRPQE--------HLANIKTPPNL  367
            ++ +      +L++    +P+   ++ PDN  + + +   E        +L++     ++
Sbjct  330  ANDENQQGGSSLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKAEVQNDF  389

Query  368  CGGPVIISGNANLAGANLLSTVVDESAG-----------KDQSPASSVAFAA--------  408
             GGP +++G+      ++++   + + +             ++P+ +V++A+        
Sbjct  390  LGGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEMPGLSLL  449

Query  409  ---TGLEPVD----------DIWHIPALMDDVEHLQDMAYRLAFELSEAMGCADSIAEYK  455
                +L +V+          DIW IPAL DD+EHLQDMAYRLA+EL+EAMGC   ++E K
Sbjct  450  PTEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEVHVSEDK  509

Query  456  QRDSAGYSTLADSTQKGNTNRFVTFLLGLTGHSGQESISLSIFCQTFLGSADQSDPPVLD  515
            +  +AG+S         +   F  FL GL+GH  +  +++ +FC  F+GS   +D PV+D
Sbjct  510  NASAAGFSV------SEHGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPVFD  563

Query  516  DIHLVK  521
            D+H+VK
Sbjct  564  DVHVVK  569

17) W5S_3554 in NC_017845


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  407 bits (1533),  Expect = 8e-115, Method: Compositional matrix adjust.
 Identities = 275/551 (50%), Positives = 391/551 (71%), Gaps = 44/551 (7%)

Query  29   VLPVSEMAMVLTLDELRPNPDNPRTSRNPKYADIKASIRMRGLDSLPKVTRDPD-GDDIY  87
            ++P SEM+MVLTLDE+ PNPDNPRT+RNPKY +IK SIR RGLD++PKVT++PD  +  Y
Sbjct  30   IMPTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPY  89

Query  88   IFSDGGNTRYQILCELYQETGDERFYRIHTIFKPWPGRLQCVIGHLAENEVRGDLTYIEK  147
            IFSDGGNTRY IL EL+ ET DERFYR+H++FKPWPGRL+C++GHLAEN+VRGDLT+I+K
Sbjct  90   IFSDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDK  149

Query  148  AFGIHKARTIWEEQLGRSVTLRELSELLNQQGYPIDNSSISRMEDTLKYLYPHLPTLLNS  207
            A+GI KAR+I EE LGR+VTLREL++LL QQGYPI+NS ISRME+T+ YLYP +P LL S
Sbjct  150  ALGIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVS  209

Query  208  GLSRSQTMPLLALRSAAEKTWKVYA--NDVASQYIsdfsdafsaacsafddPDRYSLEMF  265
            GL+++Q + LL LR+ A K W+ Y+   +  S++    ++ F+  C+ FDDP+ YS+EMF
Sbjct  210  GLGKPQIVNLLNLRADALKIWQQYSVMTETDSDF----NEIFGHVCTQFDDPEVYSFEMF  265

Query  266  RDELIGELLKALPHPSLNYDRWLIELDPKEQQRRELFGEP--LAPPVVQEPIRQPLKENI  323
            RDE+IG L++ LPHPSLNYDRWL+ELDPK +++R LFGEP  +A+ +V ++ RQ   ++ 
Sbjct  266  RDEFIGMLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPEPVASHLV-DADRQTW-QST  323

Query  324  TQLPPQTGPENPVNG--LRSGTLVGGVTRPEPAPSNVPETGLTPDAGMQPIDAGVASTLP  381
            + LP  +  EN   G  L++  L  +   P  + ++  + +    +G + +++  ++ LP
Sbjct  324  ASLPGTANDENQQGGSSLKP-KLNNAPVLPKQPDPDNDNGDNDDVTG-EWFGSCGSPRLP  381

Query  382  YRAELQPDLYGGQTVIGGE-------------TLSPMGNGFSQTSLMSALSENRDDALHv  428
             +AE+Q D+ GG +V+ G+              ++  +++F+ +  ++  ++   DA+ +
Sbjct  382  -KAEVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQ-VGLTADTPSDAVSI  439

Query  429  sss-------------ssvsFAATGLEPVADIWHIPALQDDVEHLQDMSYRLAFELAEAM  475
            +S              SSV FA  GLEPV+DIW IPALQDD+EHLQDM+YRLA+ELAEAM
Sbjct  440  ASEMPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAM  499

Query  476  GCADDILEAKRWDQAGYTTSDTNNNEFVLLLAGLIGEDRELPFNTFGFCLNFLGFPQKSG  535
            GC  ++ E K    AG++ S+ +  EF L+LAGL G+  +  FN F FCLNF+G    ++
Sbjct  500  GCEVHVSEDKNASAAGFSVSE-HGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGD  558

Query  536  SPVLHDVHVVK  546
            +PV++DVHVVK
Sbjct  559  TPVFDDVHVVK  569

18) SerAS12_0265 in NC_015566


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  406 bits (1527),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 261/548 (48%), Positives = 387/548 (71%), Gaps = 37/548 (6%)

Query  36   PVSEMPLVLTLDEVnpnpdnprttrnpKYDDIKASIRARGLDTVPKVTRDPERPELGYFF  95
            P SEMP+VLTLDEV PNPDNPRTTRNPKYD+IK SIRARGLDTVPKVT++P+ P   Y+F
Sbjct  32   PTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPYIF  91

Query  96   SDGGNTRYAILSELWQETGEERFYRFSCVFKPWPGRLSCVIGHLAENEVRGDLSFIEKAF  155
            SDGGNTRYAIL EL  ET +ERFYRF  +FKPWPGRL C++GHLAEN+VRGDL+FI+KA+
Sbjct  92   SDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDKAL  151

Query  156  GIRQARELYEAQLGKPVSLRELSTLLTAEGYPVHNSSISRMEDAVQYLYPYMPHLLETGL  215
            GI++AR + E  LG+ V+LREL+ LL  +GYP+HNS ISRME++V+YLYP+MP+LL +GL
Sbjct  152  GIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVSGL  211

Query  216  GRPQILQLLAMRSHAETTWQKHCITQDSDQPFDTVFGDVCRHFDSPEVYSLDMFRDELIG  275
            G+PQI++LL +R++A   WQ+  +  ++D  F+ +FG+VC +FD PEVYS++MFRDE+IG
Sbjct  212  GKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEFIG  271

Query  276  ALINALPHPLLNYDRWLLELDPKEQNRRKHLGEPTSTPELPDKASTVVLAPELQQ-EENG  334
             L+N LPHP LNYDRWLLELDPK +N+RK +GE       P+  ++ ++ ++ Q  +  +
Sbjct  272  MLVNVLPHPSLNYDRWLLELDPKARNQRKLFGE-------PEPVASHLVDADRQTWQSTA  324

Query  335  GLPSTESEVPGGGSSLVLDSALLESAGDSDNESQGVQDEEIPSTQTE----------PRV  384
            +LP+T ++    G+S  L + L +++  + +   + ++ +      E          P+ 
Sbjct  325  SLPGTANDENQQGGS-SLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKA  383

Query  385  ETQPDLYGAPSVLSGDI-----ETLLDGENTSVNEPLLPGSH---ESTAPHNNIETQPK-  435
            E Q D+ G+PSVL+GD+     + + D+ N +V+ + ++G++    + +P + +   +  
Sbjct  384  EVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEM  443

Query  436  ------QvvapvvevpfaevGLEPVSSIWAISALQDDIEHLQVITFRLAFELAEVAGCEA  489
                     +++  V FA+VGLEPV+ IW I+ALQDDIEHLQ +++RLA+ELAE  GCE 
Sbjct  444  PGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEV  503

Query  490  EIKADKADLQAAGYALTAERPSRFTALLLTLAGNNPDGASSSSLN-EALIGSENAADWPL  548
            ++  DK    AAG++++ E+ + F+ +L  L+G+ P+   +  +    ++GS++A+D P+
Sbjct  504  HVSEDKNA-SAAGFSVS-EHGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPV  561

Query  549  LDDIHAVK  556
            +DD+H VK
Sbjct  562  FDDVHVVK  569

19) SerAS13_0264 in NC_017573


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  406 bits (1527),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 261/548 (48%), Positives = 387/548 (71%), Gaps = 37/548 (6%)

Query  36   PVSEMPLVLTLDEVnpnpdnprttrnpKYDDIKASIRARGLDTVPKVTRDPERPELGYFF  95
            P SEMP+VLTLDEV PNPDNPRTTRNPKYD+IK SIRARGLDTVPKVT++P+ P   Y+F
Sbjct  32   PTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPYIF  91

Query  96   SDGGNTRYAILSELWQETGEERFYRFSCVFKPWPGRLSCVIGHLAENEVRGDLSFIEKAF  155
            SDGGNTRYAIL EL  ET +ERFYRF  +FKPWPGRL C++GHLAEN+VRGDL+FI+KA+
Sbjct  92   SDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDKAL  151

Query  156  GIRQARELYEAQLGKPVSLRELSTLLTAEGYPVHNSSISRMEDAVQYLYPYMPHLLETGL  215
            GI++AR + E  LG+ V+LREL+ LL  +GYP+HNS ISRME++V+YLYP+MP+LL +GL
Sbjct  152  GIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVSGL  211

Query  216  GRPQILQLLAMRSHAETTWQKHCITQDSDQPFDTVFGDVCRHFDSPEVYSLDMFRDELIG  275
            G+PQI++LL +R++A   WQ+  +  ++D  F+ +FG+VC +FD PEVYS++MFRDE+IG
Sbjct  212  GKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEFIG  271

Query  276  ALINALPHPLLNYDRWLLELDPKEQNRRKHLGEPTSTPELPDKASTVVLAPELQQ-EENG  334
             L+N LPHP LNYDRWLLELDPK +N+RK +GE       P+  ++ ++ ++ Q  +  +
Sbjct  272  MLVNVLPHPSLNYDRWLLELDPKARNQRKLFGE-------PEPVASHLVDADRQTWQSTA  324

Query  335  GLPSTESEVPGGGSSLVLDSALLESAGDSDNESQGVQDEEIPSTQTE----------PRV  384
            +LP+T ++    G+S  L + L +++  + +   + ++ +      E          P+ 
Sbjct  325  SLPGTANDENQQGGS-SLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKA  383

Query  385  ETQPDLYGAPSVLSGDI-----ETLLDGENTSVNEPLLPGSH---ESTAPHNNIETQPK-  435
            E Q D+ G+PSVL+GD+     + + D+ N +V+ + ++G++    + +P + +   +  
Sbjct  384  EVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEM  443

Query  436  ------QvvapvvevpfaevGLEPVSSIWAISALQDDIEHLQVITFRLAFELAEVAGCEA  489
                     +++  V FA+VGLEPV+ IW I+ALQDDIEHLQ +++RLA+ELAE  GCE 
Sbjct  444  PGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEV  503

Query  490  EIKADKADLQAAGYALTAERPSRFTALLLTLAGNNPDGASSSSLN-EALIGSENAADWPL  548
            ++  DK    AAG++++ E+ + F+ +L  L+G+ P+   +  +    ++GS++A+D P+
Sbjct  504  HVSEDKNA-SAAGFSVS-EHGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPV  561

Query  549  LDDIHAVK  556
            +DD+H VK
Sbjct  562  FDDVHVVK  569

20) SerAS9_0265 in NC_015567


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  406 bits (1527),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 261/548 (48%), Positives = 387/548 (71%), Gaps = 37/548 (6%)

Query  36   PVSEMPLVLTLDEVnpnpdnprttrnpKYDDIKASIRARGLDTVPKVTRDPERPELGYFF  95
            P SEMP+VLTLDEV PNPDNPRTTRNPKYD+IK SIRARGLDTVPKVT++P+ P   Y+F
Sbjct  32   PTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPYIF  91

Query  96   SDGGNTRYAILSELWQETGEERFYRFSCVFKPWPGRLSCVIGHLAENEVRGDLSFIEKAF  155
            SDGGNTRYAIL EL  ET +ERFYRF  +FKPWPGRL C++GHLAEN+VRGDL+FI+KA+
Sbjct  92   SDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDKAL  151

Query  156  GIRQARELYEAQLGKPVSLRELSTLLTAEGYPVHNSSISRMEDAVQYLYPYMPHLLETGL  215
            GI++AR + E  LG+ V+LREL+ LL  +GYP+HNS ISRME++V+YLYP+MP+LL +GL
Sbjct  152  GIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVSGL  211

Query  216  GRPQILQLLAMRSHAETTWQKHCITQDSDQPFDTVFGDVCRHFDSPEVYSLDMFRDELIG  275
            G+PQI++LL +R++A   WQ+  +  ++D  F+ +FG+VC +FD PEVYS++MFRDE+IG
Sbjct  212  GKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEFIG  271

Query  276  ALINALPHPLLNYDRWLLELDPKEQNRRKHLGEPTSTPELPDKASTVVLAPELQQ-EENG  334
             L+N LPHP LNYDRWLLELDPK +N+RK +GE       P+  ++ ++ ++ Q  +  +
Sbjct  272  MLVNVLPHPSLNYDRWLLELDPKARNQRKLFGE-------PEPVASHLVDADRQTWQSTA  324

Query  335  GLPSTESEVPGGGSSLVLDSALLESAGDSDNESQGVQDEEIPSTQTE----------PRV  384
            +LP+T ++    G+S  L + L +++  + +   + ++ +      E          P+ 
Sbjct  325  SLPGTANDENQQGGS-SLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKA  383

Query  385  ETQPDLYGAPSVLSGDI-----ETLLDGENTSVNEPLLPGSH---ESTAPHNNIETQPK-  435
            E Q D+ G+PSVL+GD+     + + D+ N +V+ + ++G++    + +P + +   +  
Sbjct  384  EVQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEM  443

Query  436  ------QvvapvvevpfaevGLEPVSSIWAISALQDDIEHLQVITFRLAFELAEVAGCEA  489
                     +++  V FA+VGLEPV+ IW I+ALQDDIEHLQ +++RLA+ELAE  GCE 
Sbjct  444  PGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEV  503

Query  490  EIKADKADLQAAGYALTAERPSRFTALLLTLAGNNPDGASSSSLN-EALIGSENAADWPL  548
            ++  DK    AAG++++ E+ + F+ +L  L+G+ P+   +  +    ++GS++A+D P+
Sbjct  504  HVSEDKNA-SAAGFSVS-EHGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPV  561

Query  549  LDDIHAVK  556
            +DD+H VK
Sbjct  562  FDDVHVVK  569

21) YPZ3_0293 in NC_014029


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  403 bits (1517),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 272/541 (51%), Positives = 390/541 (73%), Gaps = 29/541 (5%)

Query  36   PVSEMPLVLTLDEVnpnpdnprttrnpKYDDIKASIRVRGLDTVPKVTRDPERPELGYFF  95
            P SEMP+VLTLDEV PNPDNPRTTRNPKYD+IK SIR RGLDTVPKVT++P+ P   Y+F
Sbjct  32   PTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPYIF  91

Query  96   SDGGNTRYAILSELWQETGEERFYRFSCVFKPWPGRLSCVIGHLAENEVRGDLTFIEKAF  155
            SDGGNTRYAIL EL  ET +ERFYRF  +FKPWPGRL C++GHLAEN+VRGDLTFI+KA+
Sbjct  92   SDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDKAL  151

Query  156  GIQQARTLFEEQLGKTVSLRELSTLLGESGYPVHSSNISRMEDTVQYLHPYMPALLESGL  215
            GI++AR++ EE LG+TV+LREL+ LLG+ GYP+H+S ISRME+TV+YL P+MP LL SGL
Sbjct  152  GIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVSGL  211

Query  216  GRPQIQHLLALRAHAEKTWLDFVIEGGSQEAFKSVFGRVCSQFNDPELYSLDMFRDELIG  275
            G+PQI +LL LRA+A K W ++ +   ++  F+ +FG+VC+QF+DPE+YS++MFRDE+IG
Sbjct  212  GKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEFIG  271

Query  276  ALINALPHPLLNYDRWLLELDPKEQNRRKHLGEPELSGKGNTVELAPALQQDDTG--GQT  333
             L+N LPHP LNYDRWLLELDPK +N+RK +GEPE +  ++ V+      Q  ++  G +
Sbjct  272  MLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPE-PVASHLVDADRQTWQSTASLPGTA  330

Query  334  EPEVLGGGSSL--------VLDSALHESTGDADeesqetqeeenpttktepRVETQPDLY  385
            + E   GGSSL        VL    +   +++D++    +   +  +   P+ E Q D+ 
Sbjct  331  NDENQQGGSSLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKAEVQNDFL  390

Query  386  GAPSVLSGDIET-----VLDGENTTVNEAPLSGAHE--STASPSNTETQPKQ--------  430
            G+PSVL+GD+       + D+ N +V+ ++++GA+   ++ +PS++ + + +        
Sbjct  391  GGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEMPGLSLLP  450

Query  431  GvapaaevpfaevGLEPVSSIWAISALQDDIEHLQVITFRLAFELAEVAGCEAEIKADKA  490
              ++ + V FA+VGLEPV+ IW I+ALQDDIEHLQ +++RLA+ELAE  GCE ++  DK 
Sbjct  451  TEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEVHVSEDKN  510

Query  491  DLEAAGYALTAEHPSRFTALLLTLAGNNPDGASSSSL-NEALIGSENAADWPLLDDIHAV  549
               AAG++++ EH + F+ +L  L+G+ P+   +  +    ++GS++A+D P++DD+H V
Sbjct  511  A-SAAGFSVS-EHGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPVFDDVHVV  568

Query  550  K  550
            K
Sbjct  569  K  569

22) CFSAN002050_22430 in NC_021818


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  396 bits (1488),  Expect = 3e-111, Method: Compositional matrix adjust.
 Identities = 245/544 (46%), Positives = 367/544 (68%), Gaps = 47/544 (8%)

Query  27   VMPAAEMPMVLTLDQLSPNPDNPRTSRNPRYDDIKASIRSRGLDTVPKVTRDPDGEPDMY  86
            +MP++EMPMVLTLD+++PNPDNPRT+RNP+YD+IK SIR+RGLDTVPKVT++PD     Y
Sbjct  30   IMPTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPY  89

Query  87   IFSDGGNTRYQILSELWQETGEDRFFRVHVLFKPWPGRLQCVIGHLAENEVRGELSFIEK  146
            IFSDGGNTRY IL EL  ET ++RF+R H LFKPWPGRL+C++GHLAEN+VRG+L+FI+K
Sbjct  90   IFSDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDK  149

Query  147  AQGIHKARSIYEEQLGKPVSLRQLSELLTREGLPVHNSTISRMEDALKYLFPWIPDLLES  206
            A GI KAR+I EE LG+ V+LR+L++LL ++G P+HNS ISRME+++ YL+P +P+LL S
Sbjct  150  ALGIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVS  209

Query  207  GLGRPQITALLALRHDAERVWDEFCLISDTGDKSFSDVFGQCCGRFNSPELWSLEMFRDE  266
            GLG+PQI  LL LR DA ++W+++ ++++T D  F+++FG+ C +F+ PE+ S+EMFRDE
Sbjct  210  GLGKPQIVNLLNLRADALKIWQQYSVMTET-DSDFNEIFGHVCTQFDDPEVYSFEMFRDE  268

Query  267  LIGDLLHALPHPELDYDRWMMELDPKERNRRHHFGDPEPVSIPPVNSLVTADS----AGQ  322
            +IG L++ LPHP L+YDRW++ELDPK RN+R  FG+PEPV+    + LV AD     +  
Sbjct  269  FIGMLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPEPVA----SHLVDADRQTWQSTA  324

Query  323  ATPAQKSVEVAQPFSSPRREISGEPVTPAPDNTPPEKLDKQP--------------PRHE  368
            + P+  + E  Q  SS +  ++  PV P   +   ++ D++               P+ E
Sbjct  325  SLPGTANDENQQGGSSLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKAE  384

Query  369  VQPDMYGAAPVISG-----------ESGDV----SGLVTLSDGYgeenggeedngedgL-  412
            VQ D  G+++V++G           ++G++    S++     G   +  ++  +    + 
Sbjct  385  VQNDFLGGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEMP  444

Query  413  -LSLLTPEPEVVLQDDAPVTNDS---IWHVPAHQDDIEHLQNTAFRLAWELGEVLGCEDE  468
             LSLL  EP +   + A V  ++   IW +PA QDDIEHLQ+ A+RLA EL+E +GCE +
Sbjct  445  GLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEVH  504

Query  469  ILPQRDNDMSAGYVGAGEVCSEAAAFLLGLTGEAPALHPAAGVCGLPELFTGGPGEGEAP  528
            +  +++   +AG+ + +E  +E A FL GL+G+ P  +    +  L   F G+ + G++P
Sbjct  505  VSEDKNAS-AAGF-SVSEHGGEFALFLAGLSGHVPNKQFNMFMFCLN--FFGSQSAGDTP  560

Query  529  ALTD  532
             + D
Sbjct  561  VFDD  564

23) NT01EI_0318 in NC_012779


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  366 bits (1374),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 256/565 (46%), Positives = 376/565 (67%), Gaps = 43/565 (7%)

Query  27   PVVEMPMVLTIEQLAPNPDNPRTSRNSRYDEIKASIKARGLDTVPKVTRDPDGDPNKYIF  86
            P  EMPMVLT++++APNPDNPRT+RN++YDEIK SI+ARGLDTVPKVT++PD   + YIF
Sbjct  32   PTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPYIF  91

Query  87   SDGGNTRYQILTELWQETGEERFFRIHVLVKPWPGRLQCVIGHLAENEVRGDLSFIEKAQ  146
            SDGGNTRY IL EL  ET +ERF+R+H L KPWPGRL+C++GHLAEN+VRGDL+FI+KA 
Sbjct  92   SDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDKAL  151

Query  147  GIHKARTIYEEQLGKSVSLRELSTLLTREGLPVHNSTISRMEDALKHLFPWMPELLESGL  206
            GI KAR+I EE LG++V+LREL+ LL ++G P+HNS ISRME+++  L+P MPELL SGL
Sbjct  152  GIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVSGL  211

Query  207  GAPQIRLLLALRQDAEKVWDQFCLLSERSDKCFTEVFGECCRKFNSPELWSPEMFRDEFI  266
            G PQI  LL LR DA K+W+Q+ +++E +D  F E+FG+ C +F+ PE+ S EMFRDEFI
Sbjct  212  GKPQIVNLLNLRADALKIWQQYSVMTE-TDSDFNEIFGHVCTQFDDPEVYSFEMFRDEFI  270

Query  267  GDLLLALPHPELNYDRWMMELDPSERNRRYHFGEPEETTSPQGVV-------PSPFTDGI  319
            G L+  LPHP LNYDRW++ELDP  RN+R  FGEPE  +S             +++ +  
Sbjct  271  GMLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPEPVASHLVDADRQTWQSTASLPGTA  330

Query  320  QDTAPEPDFALPKALTESP------------PATPAVTEEWPQQDENLRVSPEDNKEAPL  367
            +D   + + +L   L ++P                 VT EW     + R++  + ++  L
Sbjct  331  NDENQQGGSSLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKAEVQNDFL  390

Query  368  SLPRT---EVQPDMY-----GGSPVISGDGMGP---GLSPDNDETLISMLA--PGLE--D  412
            + P     +V PD Y     +G+  +S+ + +    GL++D     +S+ +  PGL    
Sbjct  391  GGPSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEMPGLSLLP  450

Query  413  EGEALHPA--CHIAGDA---IWSVPAYQDDIEHLQNIAFIMAWELGEKLGCEDEILPDRA  467
               AL +    +++ ++   IW +PA QDDIEHLQ++A+ +A EL+E +GCE ++  D+ 
Sbjct  451  TEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEVHVSEDKN  510

Query  468  SSLSPGYCAAGDSCSAPAAFLLSLAGCCPAQCPTTGMD-VVLIGGSAQQDVPVLDDENAI  526
            +S ++G+  + ++ +  A FL +L+G  P +     M  + ++G+ +  D PV+DD + +
Sbjct  511  AS-AAGFSVSEHG-GEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPVFDDVHVV  568

Query  527  KllrlmrvmrrlrelQRGVTAVEDE  551
            K LRL+RV+RRLRELQR ++A +++
Sbjct  569  KSLRLIRVIRRLRELQRNMAAEQND  593

24) UMNK88_5004 in NC_017641


> NC_004631_P3|3|G3|29144488|NP_807830.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|2389..4188|-|t4228|hypothetical 
protein
Length=599

 Score =  339 bits (1274),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 243/549 (45%), Positives = 358/549 (66%), Gaps = 42/549 (7%)

Query  25   VVALGETPMILTLDQLrpnpdnprttrnprYDDIKNSIHARGLDTVPKVTRMPDSEPDVY  84
            +++ +E PM+LTLD++ PNPDNPRTTRNP+YD+IK+SI+ARGLDTVPKVT+ PD     Y
Sbjct  30   IMPTSEMPMVLTLDEVAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPY  89

Query  85   IFSDGGNTRYQILTELWKETGDPRFYRIHVLFKPWPGRLQCVIGHLAENEVRGELTFIEK  144
            IFSDGGNTRY IL EL  ET D RFYR+H LFKPWPGRL+C++GHLAEN+VRG+LTFI+K
Sbjct  90   IFSDGGNTRYAILRELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDK  149

Query  145  AQGIHKARLIYEEQLNKSVSMRELSSLLTEQGLPVDASSISRMENALKYLYPWIPELMES  204
            A GI KAR I EE L ++V++REL+ LL +QG P++ S ISRME+++ YLYP +PEL+ S
Sbjct  150  ALGIKKARAIHEETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVS  209

Query  205  GLGRHQVTALLALRQDAERVWGQFALASGTDAEFDRVFGESCRKFNSPELWSLEMFRDEL  264
            GLG+ Q+  LL LR DA ++W Q+++ + TD++F+ +FG+ C +F+ PE+ S+EMFRDE+
Sbjct  210  GLGKPQIVNLLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEF  269

Query  265  IGDLLQALPHPSLDYDRWLLELDPKERNRRHHFGepepvvvppsvRDSGTGQPGAPVSRT  324
            IG L++ LPHPSL+YDRWLLELDPK RN+R  FGEPEPV       D  T Q+ A+++ T
Sbjct  270  IGMLVNVLPHPSLNYDRWLLELDPKARNQRKLFGEPEPVASHLVDADRQTWQSTASLPGT  329

Query  325  RSEAPECLPDTDAEPVPESTAPGTEPGQQGIARPENAVSDTDHT--EKCGFPS-PEETAD  381
             ++  +   + ++   P    +   P Q +    +    D        CG P  P    +
Sbjct  330  ANDENQ---QGGSSLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKAEVQ  386

Query  382  RAPSSAGKVRRSEIQPDMYGGEPVFSGDAVEAGIAGSAVPSV---MTGDTAPSGTPDA--  436
                ++  V  +++ PD Y     F  DA + ++++SA ++    +T+DT++ + + A  
Sbjct  387  NDFLGGPSVLTGDVIPDEYH----FIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASE  442

Query  437  ------LPA----SVTHFAEG--------------RDDIEHLQNEAFRLAWELAESAGCA  472
                  LP+    S  +FA+               +DDIEHLQ+ A+RLA ELAE+ GC 
Sbjct  443  MPGLSLLPTEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCE  502

Query  473  EEIAMDRESDLSAGFGTAEEKCSPVTAFLVGLTGDAPLTVSPVSLTDL-LTGGSAPEAWP  531
             +++ D+++  +AGF+ +E+  +  + FL GL+G+ P     + +  L + G+ ++   P
Sbjct  503  VHVSEDKNAS-AAGFSVSEHG-GEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTP  560

Query  532  LLDDEHAVK  540
            ++DD H VK
Sbjct  561  VFDDVHVVK  569