Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of hrpB gene of L41862

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpB
( YP_273533.1 )

type III secretion component protein HrpB

NC_005773
(Pseudomonas syringae 1448A)

8e-53

100

2) HrpB
( YP_234286.1 )

type III secretion protein HrpB

NC_007005
(Pseudomonas syringae B728a)

2e-50

3) hrpB
( NP_791210.1 )

type III secretion protein HrpB

NC_004578
(Pseudomonas syringae DC3000)

2e-34

4) Pmen_0029
( YP_001185536.1 )

YscI/HrpB family type III secretion apparatus protein

NC_009439
(Pseudomonas mendocina ymp)

2e-20

• Sequence Alignments

1) hrpB in NC_005773


> L41862|3|G3|790917|AAB00137.1|Pseudomonas_syringae_Race_4|+|1544..1918|hrpB|-|-
Length=124

 Score =  199 bits (739),  Expect = 8e-53, Method: Compositional matrix adjust.
 Identities = 124/124 (100%), Positives = 124/124 (100%), Gaps = 0/124 (0%)

Query  1    MTVSHLGNVKNISPELGQDVPQGLVSEPPQADVDIFTAATRPDNVSSGAPLSEHIASAIS  60
            MTVSHLGNVKNISPELGQDVPQGLVSEPPQADVDIFTAATRPDNVSSGAPLSEHIASAIS
Sbjct  1    MTVSHLGNVKNISPELGQDVPQGLVSEPPQADVDIFTAATRPDNVSSGAPLSEHIASAIS  60

Query  61   GGLGETEKMSQQAMRSMKKASGSGEALDIAAMTRTLSQCSLQTALTTKVVSKTAQAIDKL  120
            GGLGETEKMSQQAMRSMKKASGSGEALDIAAMTRTLSQCSLQTALTTKVVSKTAQAIDKL
Sbjct  61   GGLGETEKMSQQAMRSMKKASGSGEALDIAAMTRTLSQCSLQTALTTKVVSKTAQAIDKL  120

Query  121  TNLQ  124
            TNLQ
Sbjct  121  TNLQ  124

2) HrpB in NC_007005


> L41862|3|G3|790917|AAB00137.1|Pseudomonas_syringae_Race_4|+|1544..1918|hrpB|-|-
Length=124

 Score =  191 bits (708),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 116/124 (94%), Positives = 123/124 (99%), Gaps = 0/124 (0%)

Query  1    MTISHLGNVKSISPELGQDVPQGLVSEPAQADVDIFTAATQPDGVSSGAPLSEHIASAIS  60
            MT+SHLGNVK+ISPELGQDVPQGLVSEP+QADVDIFTAAT+PD VSSGAPLSEHIASAIS
Sbjct  1    MTVSHLGNVKNISPELGQDVPQGLVSEPPQADVDIFTAATRPDNVSSGAPLSEHIASAIS  60

Query  61   GGLGETEKMSQQAMRSMKKASGTGDALDIAAMTRTLSQCSLQTALTTKVVSKTAQALDKL  120
            GGLGETEKMSQQAMRSMKKASG+G+ALDIAAMTRTLSQCSLQTALTTKVVSKTAQA+DKL
Sbjct  61   GGLGETEKMSQQAMRSMKKASGSGEALDIAAMTRTLSQCSLQTALTTKVVSKTAQAIDKL  120

Query  121  TNLQ  124
            TNLQ
Sbjct  121  TNLQ  124

3) hrpB in NC_004578


> L41862|3|G3|790917|AAB00137.1|Pseudomonas_syringae_Race_4|+|1544..1918|hrpB|-|-
Length=124

 Score =  138 bits (508),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 80/124 (65%), Positives = 105/124 (85%), Gaps = 0/124 (0%)

Query  1    MTISQLSNLKSVSPELGQNAHQGLGSEPVQADVDLFNAAMRPDSGPAASHLSDRIASALS  60
            MT+S+L+N+K++SPELGQ+  QGL SEP QADVD+F AA RPD+ ++++ LS++IASA+S
Sbjct  1    MTVSHLGNVKNISPELGQDVPQGLVSEPPQADVDIFTAATRPDNVSSGAPLSEHIASAIS  60

Query  61   ERLGSTEKLSQQALRQMKKVSNTEDPGDIVQMSRALSQCSLQMALTTKVVSKSAQALDKL  120
              LG TEK+SQQA+R MKK S + ++ DI  M+R+LSQCSLQ ALTTKVVSK+AQA+DKL
Sbjct  61   GGLGETEKMSQQAMRSMKKASGSGEALDIAAMTRTLSQCSLQTALTTKVVSKTAQAIDKL  120

Query  121  TNLQ  124
            TNLQ
Sbjct  121  TNLQ  124

4) Pmen_0029 in NC_009439


> L41862|3|G3|790917|AAB00137.1|Pseudomonas_syringae_Race_4|+|1544..1918|hrpB|-|-
Length=124

 Score = 92.0 bits (330),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 56/126 (45%), Positives = 90/126 (72%), Gaps = 6/126 (4%)

Query  1    MSISKIDGLT--SPDL--KLDQGLVSEPSQADVDLFSSLMRDNGNTADQPSHLAAVIAET  56
            M++S ++ +   SP+L   + QGLVSEP+QADVD+F++  R +  +++ P  L+  IA +
Sbjct  1    MTVSHLGNVKNISPELGQDVPQGLVSEPPQADVDIFTAATRPDNVSSGAP--LSEHIASA  58

Query  57   VNARMTSVDDLSRQAMRHMKEAVTGNDVSAITDMSRALSQYSLQMAVTTKVVSKTGQALE  116
            +++ +   + +S+QAMR MK A  + +   I+ M+R+LSQ SLQ A+TTKVVSKT+QA++
Sbjct  59   ISGGLGETEKMSQQAMRSMKKASGSGEALDIAAMTRTLSQCSLQTALTTKVVSKTAQAID  118

Query  117  KLTNMQ  122
            KLTN+Q
Sbjct  119  KLTNLQ  124