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Homologs of intA gene of L31763

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) intA1
( YP_001209203.1 )

integrase A1

NC_009446
(Dichelobacter nodosus VCS1703A)

0.0

100

2) intA2
( YP_001209933.1 )

integrase A2

NC_009446
(Dichelobacter nodosus VCS1703A)

0.0

3) intB
( NP_900321.1 )

prophage CP4-like integrase

NC_005085
(Chromobacterium violaceum ATCC 12472)

2e-66

4) AHML_14825
( YP_008044080.1 )

phage integrase

NC_021290
(Aeromonas hydrophila ML09-119)

2e-64

5) EcHS_A0329
( YP_001457101.1 )

site-specific recombinase, phage integrase

NC_009800
(Escherichia coli HS)

6e-64

6) ETAF_0751
( YP_005698365.1 )

Integrase

NC_017309
(Edwardsiella tarda FL6-60)

9e-64

7) Q7A_2891
( YP_006297314.1 )

integrase

NC_017857
(Methylophaga sp. JAM1)

9e-64

8) ECSE_0264
( YP_002291539.1 )

putative phage integrase

NC_011415
(Escherichia coli SE11)

6e-63

9) intB
( YP_001242175.1 )

P4-like integrase

NC_009485
(Bradyrhizobium sp. BTAi1)

1e-62

10) int
( YP_002399202.1 )

Integrase from prophage

NC_011745
(Escherichia coli ED1a)

1e-62

11) intB
( YP_001143574.1 )

phage integrase

NC_009348
(Aeromonas salmonicida A449)

2e-62

12) EcSMS35_0299
( YP_001742404.1 )

phage integrase family site specific recombinase

NC_010498
(Escherichia coli SMS-3-5)

2e-62

13) SerAS9_4095
( YP_004507455.1 )

integrase

NC_015567
(Serratia plymuthica AS9)

1e-61

14) SerAS12_4096
( YP_004502503.1 )

integrase family protein

NC_015566
(Serratia sp. AS12)

1e-61

15) SerAS13_4096
( YP_006026917.1 )

integrase family protein

NC_017573
(Serratia sp. AS13)

1e-61

16) EC042_3992
( YP_006098276.1 )

integrase

NC_017626
(Escherichia coli 042)

8e-61

17) int4
( NP_994857.1 )

integrase

NC_005810
(Yersinia pestis 91001)

3e-60

18) A1122_00590
( YP_005519823.1 )

integrase

NC_017168
(Yersinia pestis A1122)

3e-60

19) YpAngola_A3853
( YP_001608158.1 )

phage integrase family site specific recombinase

NC_010159
(Yersinia pestis Angola)

3e-60

20) int
( YP_002345935.1 )

integrase

NC_003143
(Yersinia pestis CO92)

3e-60

21) int
( YP_005504005.1 )

integrase

NC_017154
(Yersinia pestis D106004)

3e-60

22) int
( YP_005507871.1 )

integrase

NC_017160
(Yersinia pestis D182038)

3e-60

23) YPC_0922
( YP_005622895.1 )

integrase

NC_017265
(Yersinia pestis Harbin 35)

3e-60

24) y3271
( NP_670570.1 )

integrase

NC_004088
(Yersinia pestis KIM)

3e-60

25) YPN_3086
( YP_649013.1 )

integrase

NC_008149
(Yersinia pestis Nepal516)

3e-60

26) int
( YP_003567008.1 )

integrase

NC_014029
(Yersinia pestis Z176003)

3e-60

27) Dda3937_00938
( YP_003884289.1 )

Integrase

NC_014500
(Dickeya dadantii 3937)

4e-60

28) ENC_02820
( YP_007844422.1 )

Integrase

NC_021046
(Enterobacter cloacae NCTC 9394)

4e-60

29) YPDSF_0629
( YP_001162011.1 )

integrase

NC_009381
(Yersinia pestis Pestoides F)

4e-60

30) ETAE_3428
( YP_003297470.1 )

integrase

NC_013508
(Edwardsiella tarda EIB202)

5e-60

31) Tint_2069
( YP_003643750.1 )

integrase family protein

NC_014153
(Thiomonas intermedia K12)

6e-60

32) YpsIP31758_0884
( YP_001399868.1 )

phage integrase family site specific recombinase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

6e-60

33) int
( YP_071664.1 )

phage integrase

NC_006155
(Yersinia pseudotuberculosis IP 32953)

6e-60

34) YPTS_3293
( YP_001873705.1 )

integrase family protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

6e-60

35) YPK_0925
( YP_001719679.1 )

integrase family protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

6e-60

36) SMWW4_v1c00920
( YP_007403919.1 )

phage integrase

NC_020211
(Serratia marcescens WW4)

7e-60

37) EcSMS35_4002
( YP_001745965.1 )

phage integrase family site specific recombinase

NC_010498
(Escherichia coli SMS-3-5)

2e-59

38) intB
( YP_007493033.1 )

putative prophage P4 integrase

NC_020409
(Desulfovibrio piezophilus C1TLV30)

3e-59

39) A3UG_00595
( YP_006475574.1 )

hypothetical protein

NC_018079
(Enterobacter cloacae SDM)

3e-59

40) xerC4
( NP_994679.1 )

phage integrase

NC_005810
(Yersinia pestis 91001)

4e-59

41) A1122_05665
( YP_005520819.1 )

putative phage integrase

NC_017168
(Yersinia pestis A1122)

4e-59

42) YPA_4123
( YP_654029.1 )

putative phage integrase

NC_008150
(Yersinia pestis Antiqua)

4e-59

43) YPO4033
( YP_002348896.1 )

phage integrase

NC_003143
(Yersinia pestis CO92)

4e-59

44) YPD4_3547
( YP_005506754.1 )

putative phage integrase

NC_017154
(Yersinia pestis D106004)

4e-59

45) YPD8_3553
( YP_005510614.1 )

putative phage integrase

NC_017160
(Yersinia pestis D182038)

4e-59

46) y4052
( NP_671345.1 )

integrase

NC_004088
(Yersinia pestis KIM)

4e-59

47) YPN_3680
( YP_649607.1 )

phage integrase

NC_008149
(Yersinia pestis Nepal516)

4e-59

48) YPDSF_3775
( YP_001165093.1 )

phage integrase

NC_009381
(Yersinia pestis Pestoides F)

4e-59

49) YpAngola_A4153
( YP_001608430.1 )

phage integrase family site specific recombinase

NC_010159
(Yersinia pestis Angola)

6e-59

50) SARI_03887
( YP_001572823.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

1e-58

51) EcolC_0053
( YP_001723066.1 )

integrase family protein

NC_010468
(Escherichia coli ATCC 8739)

1e-58

52) ECO26_4941
( YP_003231837.1 )

integrase

NC_013361
(Escherichia coli 11368)

7e-59

53) SEEH1578_04845
( YP_008245042.1 )

integrase

NC_021810
(Salmonella enterica 41578)

7e-59

54) Selin_1494
( YP_004112783.1 )

integrase family protein

NC_014836
(Desulfurispirillum indicum S5)

8e-59

55) Mpe_A1087
( YP_001020283.1 )

prophage CP4-like integrase

NC_008825
(Methylibium petroleiphilum PM1)

8e-59

56) Msip34_1673
( YP_003051445.1 )

integrase family protein

NC_012969
(Methylovorus glucosetrophus SIP3-4)

9e-59

57) YPC_4545
( YP_005626217.1 )

putative phage integrase

NC_017265
(Yersinia pestis Harbin 35)

1e-58

58) YE105_C3845
( YP_004300042.1 )

putative phage integrase

NC_015224
(Yersinia enterocolitica 105.5R(r))

5e-58

59) Dd586_3778
( YP_003335314.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

1e-57

60) A79E_0092
( YP_006633935.1 )

phage integrase, Phage P4-associated

NC_018522
(Klebsiella pneumoniae 1084)

1e-57

61) KP1_5380
( YP_002921868.1 )

phage integrase family protein

NC_012731
(Klebsiella pneumoniae NTUH-K2044)

1e-57

62) EbC_44590
( YP_003743837.1 )

phage integrase

NC_014306
(Erwinia billingiae Eb661)

2e-57

63) YE105_C2844
( YP_004299043.1 )

Integrase

NC_015224
(Yersinia enterocolitica 105.5R(r))

5e-57

64) intS
( YP_004950715.1 )

prophage CPS-53 integrase

NC_016514
(Enterobacter cloacae EcWSU1)

9e-57

65) UWK_00659
( YP_007466893.1 )

Integrase

NC_020304
(Desulfocapsa sulfexigens DSM 10523)

5e-56

66) RSc0968
( NP_519089.1 )

cp4-like integrase

NC_003295
(Ralstonia solanacearum GMI1000)

1e-55

67) SBG_2173
( YP_004731002.1 )

phage integrase

NC_015761
(Salmonella bongori NCTC 12419)

2e-54

68) SeSA_A0374
( YP_002113350.1 )

site-specific recombinase, phage integrase family protein

NC_011094
(Salmonella enterica CVM19633)

1e-53

69) Veis_3652
( YP_998386.1 )

phage integrase family protein

NC_008786
(Verminephrobacter eiseniae EF01-2)

9e-54

70) CSSP291_04405
( YP_007439767.1 )

putative integrase

NC_020260
(Cronobacter sakazakii Sp291)

3e-53

71) ECL_03688
( YP_003614171.1 )

putative integrase

NC_014121
(Enterobacter cloacae ATCC 13047)

3e-53

72) ESA_03025
( YP_001439090.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

1e-51

73) EAE_24695
( YP_004595111.1 )

putative integrase

NC_015663
(Enterobacter aerogenes KCTC 2190)

8e-52

74) ECL_01076
( YP_003611586.1 )

hypothetical protein

NC_014121
(Enterobacter cloacae ATCC 13047)

2e-51

75) ST548_p3272
( YP_007391326.1 )

Prophage CP4-57 integrase

NC_020181
(Enterobacter aerogenes EA1509E)

2e-50

76) Fraau_2605
( YP_005378631.1 )

Integrase

NC_017033
(Frateuria aurantia DSM 6220)

2e-50

77) CSSP291_03150
( YP_007439517.1 )

integrase

NC_020260
(Cronobacter sakazakii Sp291)

8e-50

78) YPTS_1211
( YP_001871643.1 )

integrase

NC_010634
(Yersinia pseudotuberculosis PB1/+)

1e-49

79) YPA_0385
( YP_650298.1 )

integrase

NC_008150
(Yersinia pestis Antiqua)

2e-48

• Sequence Alignments

1) intA1 in NC_009446


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  651 bits (2459),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/401 (100%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MLGNHFSNIMRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERN  60
            MLGNHFSNIMRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERN
Sbjct  1    MLGNHFSNIMRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERN  60

Query  61   MSLGRYPAMSIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREW  120
            MSLGRYPAMSIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREW
Sbjct  61   MSLGRYPAMSIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREW  120

Query  121  YQLKRPEWKNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETASRVK  180
            YQLKRPEWKNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETASRVK
Sbjct  121  YQLKRPEWKNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETASRVK  180

Query  181  QRIRAVFDYAIQTDRLSRNPAIALPKIFRSTIAKQPSLPARELGIFFKQLDTYGNPKTAL  240
            QRIRAVFDYAIQTDRLSRNPAIALPKIFRSTIAKQPSLPARELGIFFKQLDTYGNPKTAL
Sbjct  181  QRIRAVFDYAIQTDRLSRNPAIALPKIFRSTIAKQPSLPARELGIFFKQLDTYGNPKTAL  240

Query  241  ALRLLILTMTRSGELRFGQWQELQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLR  300
            ALRLLILTMTRSGELRFGQWQELQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLR
Sbjct  241  ALRLLILTMTRSGELRFGQWQELQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLR  300

Query  301  RNNSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIER  360
            RNNSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIER
Sbjct  301  RNNSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIER  360

Query  361  QLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKIRVS  401
            QLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKIRVS
Sbjct  361  QLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKIRVS  401

2) intA2 in NC_009446


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  650 bits (2457),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 400/401 (99%), Positives = 401/401 (100%), Gaps = 0/401 (0%)

Query  1    MLGNHFSNIMRLTDKIIQTAKKPSRGYLRLTDGDGLSLKITDRGSYFWNFRYYINGRERN  60
            MLGNHFSNIMRLTDKIIQTAKKPSRGYLRLTDGDGL+LKITDRGSYFWNFRYYINGRERN
Sbjct  1    MLGNHFSNIMRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERN  60

Query  61   MSLGRYPAMSIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREW  120
            MSLGRYPAMSIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREW
Sbjct  61   MSLGRYPAMSIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREW  120

Query  121  YQLKRPEWKNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETASRVK  180
            YQLKRPEWKNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETASRVK
Sbjct  121  YQLKRPEWKNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETASRVK  180

Query  181  QRIRAVFDYAIQTDRLSRNPAIALPKIFRSTIAKQPSLPARELGIFFKQLDTYGNPKTAL  240
            QRIRAVFDYAIQTDRLSRNPAIALPKIFRSTIAKQPSLPARELGIFFKQLDTYGNPKTAL
Sbjct  181  QRIRAVFDYAIQTDRLSRNPAIALPKIFRSTIAKQPSLPARELGIFFKQLDTYGNPKTAL  240

Query  241  ALRLLILTMTRSGELRFGQWQELQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLR  300
            ALRLLILTMTRSGELRFGQWQELQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLR
Sbjct  241  ALRLLILTMTRSGELRFGQWQELQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLR  300

Query  301  RNNSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIER  360
            RNNSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIER
Sbjct  301  RNNSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIER  360

Query  361  QLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKIRVS  401
            QLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKIRVS
Sbjct  361  QLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKIRVS  401

3) intB in NC_005085


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  246 bits (918),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 172/402 (43%), Positives = 265/402 (66%), Gaps = 17/402 (4%)

Query  1    MPLTDTAIRNAKPREDGKPAKLADGGSLFLWVMPNGAKYWRMAYRFDGKQKTLAFGVYPT  60
            M LTD  I+ AK    G   +L+DG++L L +   G+ +W   Y ++G+++ +++G YP+
Sbjct  10   MRLTDKIIQTAKKPSRGY-LRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPA  68

Query  61   TSLKDAREKREAARKLLAAGTDPNAAKKEQKRE---RQLTVENSFEIVAREWYDKQLPRW  117
             S+  AR      R  L  G DP A +K ++      + T  ++FE+VAREWY+ + P W
Sbjct  69   MSIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEW  128

Query  118  TDD-HAVRILDSLKADAFPDLGKLPVSQLTAPVILDTIRKIEKRGAVETAQRVLQRISAV  176
             ++ HA +++ +L    FP +GK P+S++++P +L  + K+  R   ETA RV QRI AV
Sbjct  129  KNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAV  186

Query  177  IRYAIQTGRAVHNPATDLTGAIRAKKVEHRPALPRGELREFYRRLAAEPLYIPTR--IAM  234
            + YAIQT+R  +NPA  L   +R+  +  +P+LP  EL  F+++L +   Y   +  +A+
Sbjct  187  FDYAIQTDRLSRNPAIALPKIFRST-IAKQPSLPARELGIFFKQLDT---YGNPKTALAL  242

Query  235  HLLMLTFVRPGELRAARWEEFDEERAEWRIPAERMKMREPHLVPLSRQALELLKELRPLT  294
            +LL+LT  R+GELR ++W+E++ +  EW+IPAERMKM  PH+VPLS  ALE+L ELR+L 
Sbjct  243  RLLILTMTRSGELRFGQWQELQGN--EWHIPAERMKMNRPHIVPLSDWALEILDELRSLR  300

Query  295  GKSALLFPAVTDLKKPMSENTLGYAMGRMGYKGTATPHGFRALASTVLNEEGF-DPDIIE  353
             +++  F    + + P+S+ TL+ AM R+GY G A PHGFRA AST +NE G+ +PD IE
Sbjct  301  RNNSPYF-VTGNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  354  KQLAHAERNKVRAAYHRAEYLEERRKMMQWWAEFLGRHQKSS  395
            +QLAH++ N VRAAY+RAEYLEER++MMQWWA+++ +  + S
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKIRVS  401

4) MYA_1732 in NC_017920


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  243 bits (906),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 161/395 (41%), Positives = 265/395 (68%), Gaps = 12/395 (3%)

Query  1    MPLTDVAVRAAKPREKSY-KLADGQGMYLEIMPNGSKYWRLKYRIDGKEKRMALRVYPAV  59
            M LTD  +++AK   ++Y +L+DG+G+ L I   GS +W ++Y I+G+E+ M+L  YPA+
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   TLLAARKARDEIKDQLRAGLDPSHEKKRVKA---QRSLDRENSFEPIAREWHQQKKGAW-  115
            ++ AAR    E++ +LR GLDP  E+K+ +A        + ++FE +AREW Q K+  W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SERHADRIMKLLERELFPAIGARPIAEIMAPELLAVIRKIEARDAIELAHKTIQATSQIF  175
            +E+HA++++  LE+ +FP IG +PI+ I +PELL V+ K+  R   E A +  Q    +F
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIATGRAERDSAPDLRGALKPRFVVHMRRVSEAELPELMRQISAYDGDFQTRLALQFM  235
             YAI T+R  R++A  L   +++  +     ++  EL  + +Q+ +Y G+ +T LAL+++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRST-IAKQPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  ALTFVRTSELRFAEWTEIDEKKEWRIPPEKMKMRTPHIVPLSTQALEVIAKLPELNGHSQ  295
             LT  R++ELRF++W E++  +EW+IP+E+MKM  PHIVPLS  ALE++  L  L  ++ 
Sbjct  246  ILTMTRSGELRFGQWQELQG-NEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNNS  304

Query  296  FLFPSRSSSKKPMSENTILYALYRMGYHSRMTGHGFRGLASTILNEHSF-NRDWIERQLA  354
              F + ++ + P+S+ T+  A+ R+GY +R   HGFR+ AST +NE ++ N D IERQLA
Sbjct  305  PYFVT-GNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQLA  363

Query  355  HSERDGVRAAYNHAEYLPERRKMMQWWSNYLWNAV  389
            H++ ++VRAAYN+AEYL ER++MMQWW++Y+++ +
Sbjct  364  HTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKI  398

5) GEM_3075 in NC_018513


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  240 bits (894),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 170/393 (44%), Positives = 259/393 (66%), Gaps = 14/393 (3%)

Query  1    MSLTDTAVRNLKPSDKPY-KLADGGGMYLHVTPNGGKYWRLAFRLHGKQKIYALGVYPQV  59
            M LTD  ++  K + + Y +L+DG+G+ L +T  G+ +W + + ++G+++  +LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARQMRDEAKKLIKQGIDPVIERKQTVR---RRSEEQATTFELIAREWHKTKRSAW-  115
            S+  AR    E +  ++QG+DP+ ERK+           Q  TFE++AREW + KR+ W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  TESHAKKIMNSLEADIFPRLGDRPIGSISAPDLLMALRVIEKRGALEIAGRVLQRCNAVF  175
             E HA++++ +LE  +FP +G +PI+ IS+P+LL  +  +  R   E A+RV QR  AVF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAVATGRIVANPAAELRGALKTPERKHHAALAHDELPEFLAKLAGYDGDPQTRLGLQLM  235
             YA+ T+R+  NPA  L   +++   K +++L+  EL  F+ +L  Y G+P+T L+L+L+
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  VHTFVRTGELRAASWAEFNLELSEWRIPAERMKMREEHIVPLSKQAVALLRQLQAVGAGS  295
            + T  R+GELR + W E  L+ +EW+IPAERMKM   HIVPLS  A+ +L +L+++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  296  DLVFPSGNGRRNKWISENTLLYALYRLGYHSRATGHGFRATASTILNEMGF-HPDWIERQ  354
               F +GN  RN  +S+ TL  A+ RLGY +RA  HGFRATAST +NE G+ +PD IERQ
Sbjct  304  SPYFVTGN--RNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  355  LAHAERNKVRAAYNRALYLAERRQMMQVWSDYL  387
            LAH++ N VRAAYNRA YL ER++MMQ W+DY+
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

6) AHML_14825 in NC_021290


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  239 bits (890),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 179/392 (46%), Positives = 261/392 (67%), Gaps = 16/392 (4%)

Query  1    MPLSDTAARQAKFTGKQ-QKLSDEKGLFLLITSSGKY-WRLKFRFGGKEKVLALGVYPEV  58
            M L+D   + AK  ++   +L+D  GL L IT  G Y W +++ + G+E+ ++LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  59   SlkearvkreearrllaDGIDPSLARKQSKVASRLASE----NSFEVIAREWHQGQLARW  114
            S+  AR    E R  L +G+DP LA ++ K A+ LA E    ++FE +AREW Q + + W
Sbjct  70   SIEAARGEALELRYHLRQGLDP-LAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEW  128

Query  115  SPG-HAQRVIESLEADAFPELGLVPVAELTAPIMLDALRKIEARGATETAGRVLQRISSV  173
                HAQ+VI +LE   FP +G  P++ +++P +L  + K+  R   ETA+RV QRI +V
Sbjct  129  KNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDR--PETASRVKQRIRAV  186

Query  174  MRYAIQTGRVSYNPAQDLKGALRATKQEHRPALPRADLPEFYRRLAAEPLNPATRLAIHL  233
              YAIQT+R+S NPA  L   +R+T   + P+LP  +L  F+++L +   NP T LA++L
Sbjct  187  FDYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYG-NPKTALALRL  244

Query  234  LMLTMTRPGEVRFARWDEFDMARAEWRIPAERMKMRAPHIVPLSRQALAVLEELRLISGH  293
            L+LTMTR+GE+RF++W+E  +   EW+IPAERMKM  PHIVPLS  AL +L+ELR +  +
Sbjct  245  LILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRN  302

Query  294  CELLFPSERKLTDPMSENTLSYAMGRMGYKGIATPHGFRALASTILNEEGF-DPDVIERQ  352
                F +  +   P+S+ TLS AM R+GY G A PHGFRA AST +NE G+ +PD IERQ
Sbjct  303  NSPYFVTGNR-NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  353  LAHAERNKVRAAYHRAEYLDDRRKLLQWLADF  384
            LAH++ N VRAAY+RAEYL++R++++QW AD+
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADY  393

7) EcHS_A0329 in NC_009800


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  237 bits (885),  Expect = 6e-64, Method: Compositional matrix adjust.
 Identities = 162/395 (42%), Positives = 247/395 (63%), Gaps = 19/395 (4%)

Query  1    MKLNARQVDAAKPREKAY-KLADGAGLYLEVVPSGSRYWRMKYRFNGKEKRMAFGVYPAV  59
            M+L  + +++AK   ++Y +L+DG GL L +   GS +W  +Y +NG+E+ M++G YPA+
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAQARALRDDAKKKLAEGIDPSLAKKEEK---LVRDVQLNNTFQAVALEWHGTKVSRW-  115
            S+  AR+   + +  L +G+DP   +K  +   L  +   ++TF+ VA EW   K + W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SEGYASDIIEAFNKDIFPYIGQQPVNEIKPLVLLNVLRRIESRGATEKAKKVRQRCSEVF  175
            +E  A ++I ++++ +FP+IG++P++ I P  LL+V+ ++  R   E A +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDR--PETASRVKQRIRAVF  187

Query  176  RYAIVTGRAEYNPAADLTSAMSGHESKHYPFLTVEELPDFFKALAGYTGSPLVVLAARLL  235
             YAI T+R   NPA  L     +  +K+ P L   EL  FFK L  Y G+P   LA RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  ILTGVRTGELRGAFWSEFDLEKAVWEIPAERMKMKRPHLVPLSTQALEIVQQLKVMSGQY  295
            ILT  R+GELR + W E  L+   W+IPAERMKM+RPH+VPLS  ALEI+++L+ +  + 
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  296  PLVFPGRNDPRKTMSEASINQVFKRIGYTGRVTGHGFRHTMSTILHEEGFNTAW----IE  351
            +  F    +    +S+++++   KR+GY+GR   HGFR T ST ++E G+   W    IE
Sbjct  304  SPYFVT-GNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGL---WNPDAIE  359

Query  352  TQLAHVDKNAIRGTYNHALYLEGRREMMQWYADYI  386
             QLAH D NA+R++YN+A YLE R+ MMQW ADYI
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

8) ETAF_0751 in NC_017309


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  237 bits (883),  Expect = 9e-64, Method: Compositional matrix adjust.
 Identities = 159/395 (41%), Positives = 247/395 (63%), Gaps = 19/395 (4%)

Query  1    MKLNARQVDAAKPREKAY-KLADGAGLYLEVVPSGSRYWRMKYRFNGKEKRMAFGVYPAV  59
            M+L  + +++AK   ++Y +L+DG GL L +   GS +W  +Y +NG+E+ M++G YPA+
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAQARALRDEAKKKLAEGIDPSFAKKEEK---LVRDVQLNNTFQSVALEWHGTKVSRW-  115
            S+  AR+   E +  L +G+DP   +K  +   L  +   ++TF+ VA EW   K + W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SEGYTSDILEAFNKDIFPYIGQQPVNEIKPLVLLHVLRRMESRGATEKAKKVRQRCSEVF  175
            +E  + +++ ++++ +FP+IG++P++ I P  LL V+ ++  R   E A +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDR--PETASRVKQRIRAVF  187

Query  176  RYAIVTGRAEYNPAADLTSAMSGHESKHYPFLTVEKLPDFFKALSSYTGSPLVVLAARLL  235
             YAI T+R   NPA  L     +  +K+ P L    L  FFK L +Y G+P   LA RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  ILTGVRTGELRGAFWSEFDLEKAVWEIPAERMKMKRPHLVPLSTQALEIVQQLKVMSGQY  295
            ILT  R+GELR + W E  L+   W+IPAERMKM+RPH+VPLS  ALEI+++L+ +  + 
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  296  PQVFPGRNDPRKTMSEASINQVFKRIGYTGKVTGHGFRHTMSTILHEEGFNTAW----IE  351
            +  F    +    +S+++++   KR+GY+G+   HGFR T ST ++E G+   W    IE
Sbjct  304  SPYFVT-GNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGL---WNPDAIE  359

Query  352  TQLAHVDKNAIRGTYNHAQYLEGRREMMQWYADYI  386
             QLAH D NA+R++YN+A+YLE R+ MMQW ADYI
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

9) Q7A_2891 in NC_017857


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  237 bits (883),  Expect = 9e-64, Method: Compositional matrix adjust.
 Identities = 160/393 (41%), Positives = 255/393 (65%), Gaps = 19/393 (4%)

Query  2    LTDVKIKALKPKDKLY-AVSDEKGLYIEVSTTGGKWWRFKFRFDGKQKRLSVGTYPDVGL  60
            LTD  I++ K   + Y  ++D  GL + ++  G+  W F++ ++G+++ +S+G YP +++
Sbjct  12   LTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAMSI  71

Query  61   KQAREQRDELRKQIANGVDPSDIRKAEK-----QLNAGQLSFEFVAREWHQKFRHRW-SE  114
              AR +  ELR ++ +G+DP   RK  +     + ++ + +FEFVAREW Q  R  W +E
Sbjct  72   EAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWKNE  131

Query  115  KYALNTISRLEREVFPFIGSKNINDIKAPELLAVLRRMESRGILETAHRVHQKCGQIFRY  174
            K A + I+ LE+ VFPFIG K I+ I +PELL V+ ++  R   ETA RV Q+   +F Y
Sbjct  132  KHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVFDY  189

Query  175  AVATGRAERDPSTDLKGALPPVKVKHHASIIEPKQIGGLLRAINGYSGSFVTLCALRLAP  234
            A+ T+R  R+P+  L   + +   K+ +  + ++++G +++ ++ Y+ +  +L ALRL  
Sbjct  190  AIQTDRLSRNPAIALPKIFRSTIAKQPS--LPARELGIFFKQLDTYGNPKTAL-ALRLLI  246

Query  235  LVFVRPGELRHAEWTEFDLEKAEWRIPAEKMKMASVHIVPLSKQAIAVIETLKPLT-GSG  293
            L   R+GELR ++W E  L+  EW+IPAE+MKM   HIVPLS  A+ +++ L++L   ++
Sbjct  247  LTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNNS  304

Query  294  KYLFPSIRTITRPMSENTVNGALRRLGYTGDEMVGHGFRSMASTILNEQG-WNRDAIERQ  352
             Y+  + R    P+S+ T++ A++RLGY+G   V HGFR+ AST +NE G WN DAIERQ
Sbjct  305  PYFVTGNRNT--PLSDTTLSLAMKRLGYAGRA-VPHGFRATASTAMNESGLWNPDAIERQ  361

Query  353  LAHSERDGVRAAYNYAEYLSERKRMMQSWANYL  385
            LAH++ ++VRAAYN AEYL ER RMMQ WA+Y+
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

10) ECSE_0264 in NC_011415


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  234 bits (873),  Expect = 6e-63, Method: Compositional matrix adjust.
 Identities = 161/397 (41%), Positives = 246/397 (62%), Gaps = 19/397 (4%)

Query  1    MKLNARQVDAAKPREKAY-KLADGAGLYLEVVPSGSRYWRMKYRFNGKEKRMAFGVYPAV  59
            M+L  + +++AK   ++Y +L+DG GL L +   GS +W  +Y +NG+E+ M++G YPA+
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAQARALRDEAKKKLAEGIDPSFAKKEEK---LVRDVQLNNTFQSVALEWHGTKVSRW-  115
            S+  AR+   E +  L +G+DP   +K  +   L  +   ++TF+ VA EW   K + W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SEGYASDIIEAFNKDIFPYIGQLPVNEIKPLVLLNVLRRIESRGATEKAKKVRQRCSEVF  175
            +E  A ++I ++++ +FP+IG+ P++ I P  LL+V+ ++  R   E A +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDR--PETASRVKQRIRAVF  187

Query  176  RYAIVTGRAEYNPAADLTSAMSGHESKHYPFLTVVELPDFFKALSGYTGSPLVVLAARLL  235
             YAI T+R   NPA  L     +  +K+ P L   EL  FFK L  Y G+P   LA RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  ILTGVRTGELRGACWSEFDFEKAVWEIPAERMKMKRPHLVPLSTQALEIAQQLKVMSGQY  295
            ILT  R+GELR + W E  ++   W+IPAERMKM+RPH+VPLS  ALEI ++L+ +  + 
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  296  PLVFPGRNDPRKTMSEASINQVFKRIGYTGKVTGHGFRHTMSTILHEEGFNTAW----IE  351
            +  F    +    +S+++++   KR+GY+G+   HGFR T ST ++E G+   W    IE
Sbjct  304  SPYFVT-GNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGL---WNPDAIE  359

Query  352  TQLAHVDKNAIRGTYNHAQYLDGRLEMMQWYADYIDK  388
             QLAH D NA+R++YN+A+YL+ R  MMQW ADYI K
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIRK  396

11) intB in NC_009485


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  233 bits (869),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 164/399 (42%), Positives = 253/399 (64%), Gaps = 23/399 (5%)

Query  1    MPLTDTKCRNAKGQIKS-RKLSDGGGLHLLITPDGAKYWRLAYRWHGKQRTLALGVYPAV  59
            M LTD   + AK   ++  +L+DG+GL L IT  G+ +W + Y  +G++R ++LG YPA+
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   GLIEARASRDDAKRSIAADIDPSIVKRERKRAAKIATG----NTFEAVAREWHE----NW  111
            ++  AR+   + +  +  ++DP +  R +K+AA +A      +TFE VAREW +    +W
Sbjct  70   SIEAARGEALELRYHLRQGLDP-LAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEW  128

Query  112  KDARSPYYAAQILRRLEADAFPAIGRRSIAALEPPELLDMLRKVEKRGVNETARRLKQLV  171
            K+ +    A Q++  LE   FP IG+++I+ + PPELL ++ K+  R   ETA R+KQ +
Sbjct  129  KNEKH---AQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRI  183

Query  172  GQIFRFAIVTGRAKRDPSVDLKDALRATGEPQRHRAMPLSELPTFLQKLESYSGEQQTKL  231
              +F +AI T+R  R+P++ L   +R+T    ++ ++P  EL  F+++L++Y G+ +T L
Sbjct  184  RAVFDYAIQTDRLSRNPAIALPKIFRSTIA--KQPSLPARELGIFFKQLDTY-GNPKTAL  240

Query  232  ALKLVTLTFLRTTELRAGKWNELENLDENSALWRIPAERMKMRLEHLVPLSRQAVAALRE  291
            AL+L+ LT  R+ ELR G+W+EL+  +     W+IPAERMKM   H+VPLS  A+  L E
Sbjct  241  ALRLLILTMTRSGELRFGQWQELQGNE-----WHIPAERMKMNRPHIVPLSDWALEILDE  295

Query  292  LRTLSGGSPNIFPSPGKGDCMSSNTMLYALYRMGYHGRATTHGFRAVASTILNETNLFNR  351
            LR+L   ++  F +  +   +S  T+  A+ R+GY GRA  HGFRA AST +NE+ L N 
Sbjct  296  LRSLRRNNSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNP  355

Query  352  DWIERQLSHVERNEVRRAYNAAEWMPDRRRMMQWWADHI  390
            D IERQL+H + N VR AYN AE + +R+RMMQWWAD I
Sbjct  356  DAIERQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

12) int in NC_011745


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  233 bits (869),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 160/393 (41%), Positives = 252/393 (65%), Gaps = 15/393 (3%)

Query  14   MLLSDLAIRRAKPKEKAY-TLNDGNGLSLLIEPNGSKGWRLRYRFAGKPKMLSLGVYPEV  72
            M L+D  I+ AK   ++Y  L DG+GL+L I   GS  W +RY + G+ + +SLG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  73   SLSDARTARDEAKRLIAGGVNPSEVRKAQKR---EQANKCGNTFEVIAREWYEKRLDRW-  128
            S+  AR    E +  +  G++P   RK ++     + +   +TFE +AREWY+ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  129  SPSYAEEMIETFEKDVFPYIGGRPIAEIKPMELLAVLSRLNDRGATEKLRKVRQRCGEVF  188
            +   A+++I T+E+ VFP+IG +PI+ I P ELL V+ +L DR  T    +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  189  RYAIITGRAEYNPAPDLASAFAPHKKEHYAYLKVDELPEFFRVFNTYTGSQIVKLGMRLL  248
             YAI T+R   NPA  L+  F +    + + L   EL  FF+ ++TY G+    L++RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  249  ILTGLRPGELRQAEWQEIDFDNRLWEVPKERMKMRRPHCVPLSEQAIAILEQLKHM-TGQ  307
            ILT  R+GELR ++WQE++ ++  W++P ERMKM RPH VPLS+ A+ IL++L+ +   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  308  YPFIFPGRIQHSKPMSEMAMNVLIRRIGYAGRVTGHGFRHTMSTILHEQG-YNSAWIETQ  366
             P++  G  +++ P+S+ ++++ ++R+GYAGR   HGFR T ST ++E G  N+  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  367  LAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  399
            LAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

13) intB in NC_009348


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  233 bits (867),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 176/395 (45%), Positives = 262/395 (67%), Gaps = 20/395 (5%)

Query  1    MPLTDITARQAKWSGKPNGD--KLADEKGLFLLVNKSGKY-WKLKYRHGGKEKKLALGVY  57
            M LTD   + AK   KP+ +  +L+D  GL L +   G Y W+++Y   G+E++++LG Y
Sbjct  10   MRLTDKIIQTAK---KPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRY  66

Query  58   PEVSLrearakrdearrVIAEGIDPGLVRKQSKVASRLVSE----NSLEVLAREWHQSQF  113
            P +S+  AR+   E R  + +G+DP L  ++ K A+ L  E    +++E +AREW Q + 
Sbjct  67   PAMSIEAARGEALELRYHLRQGLDP-LAERKKKQAAYLAEEKTQKETFEFVAREWYQLKR  125

Query  114  ALWSPG-HATRVIESLEVDVFPDLGLVPITELTAPMILEALRKVEKRGATETAGRILQRV  172
            + W    HA +VI +LE  VFP +G  PI+ +++P +L  + K+  R   ETA+R+ QR+
Sbjct  126  PEWKNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDR--PETASRVKQRI  183

Query  173  SAIMRYAIQTGRASYNPAQDLRGALKATKQEHRPALPRSELPEFFRRLEAEPLNPATRLA  232
             A+  YAIQT+R S NPA  L   +++T   + P+LP  EL  FF++L++   NP T LA
Sbjct  184  RAVFDYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYG-NPKTALA  241

Query  233  LHLLMLTMTRPGEVRFARWDEFDMERAEWRIPAARMKMRTEHLVPLSRQALAVLDELHQL  292
            L+LL+LTMTR+GE+RF++W+E  ++  EW+IPA RMKM   H+VPLS  AL +LDEL+ L
Sbjct  242  LRLLILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSL  299

Query  293  TGHCELLFPSERKLTNPMSENTLSYAMGRMGYKGIATPHGFRALASTTLNEEGF-DPDVI  351
              +    F +  +   P+S+ TLS AM R+GY G A PHGFRA AST++NE G+ +PD I
Sbjct  300  RRNNSPYFVTGNR-NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAI  358

Query  352  ERQLAHAERNKVRAAYHRAEYLDDRRKLLQWLADF  386
            ERQLAH++ N VRAAY+RAEYL++R++++QW AD+
Sbjct  359  ERQLAHTDENAVRAAYNRAEYLEERHRMMQWWADY  393

14) EcSMS35_0299 in NC_010498


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  232 bits (865),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 161/395 (41%), Positives = 245/395 (63%), Gaps = 19/395 (4%)

Query  1    MKLNARQVDAAKPREKAY-KLADGAGLYLEVVPSGSRYWRMKYRFNGKEKRMAFGVYPAV  59
            M+L  + +++AK   ++Y +L+DG GL L +   GS +W  +Y +NG+E+ M++G YPA+
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAQARALRDEAKKKLAEGIDPSFAKKEEK---LVRDVQLNNTFQAVALEWHGTKVSRW-  115
            S+  AR+   E +  L +G+DP   +K  +   L  +   ++TF+ VA EW   K + W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SEGYASDIIEAFNKDIFPYIGQLPVNDIKPLVLLNVLRRMESRGATEKAKKVRQRCSEVF  175
            +E  A ++I ++++ +FP+IG+ P++ I P  LL+V+ ++  R   E A +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDR--PETASRVKQRIRAVF  187

Query  176  RYAIVTGRAEYNPAADLTSAMSGHESKHYPFLTVEELPDFFKALAGYTGSPLVVLAARLL  235
             YAI T+R   NPA  L     +  +K+ P L   EL  FFK L  Y G+P   LA RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  ILTGVRTGELRGAFWSEFDLEKAVWEIPAERMKMKRPHLVPLSTQALEIVQQLKVISGQY  295
            ILT  R+GELR + W E  L+   W+IPAERMKM+RPH+VPLS  ALEI+++L+ +  + 
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  296  PLVFPGRNDPRKTMSEASMNQVFKRIGYTGKVTGHGFRHTMSTILHEEGFNTAW----IE  351
            +  F    +    +S+++++   KR+GY+G+   HGFR T ST ++E G+   W    IE
Sbjct  304  SPYFVT-GNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGL---WNPDAIE  359

Query  352  TQLAHVDKNAIRGTYNHALYLEGRREMMQWYADCI  386
             QLAH D NA+R++YN+A YLE R+ MMQW AD I
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

15) SerAS12_4096 in NC_015566


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  230 bits (856),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 252/393 (65%), Gaps = 15/393 (3%)

Query  1    MPLTDLELRRSKPQDKPY-TLSDGGGLSILIEPNGSKGWRFRYRFDGKPKMLSLGTYPTV  59
            M LTD  ++ +K   + Y  L+DG+GL++ I   GS  W FRY ++G+ + +SLG YP++
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLTDARQKRDEAKKLVASGINPSEARKQQKR---DRQDVTGNTFEGIAREWYVKRRDRW-  115
            S+  AR    E +  +  G++P   RK+++      +    +TFE +AREWY  +R  W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYAEEMMKTFESDVFPYIGHRPIAEIKPMELMGTLSKLDERGATEKLRKVRQRCGEVW  175
            +E  A++++ T+E  VFP+IG +PI+ I P EL+  + KL +R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIVTGRAEYNPAPDLASAFSPHKKEHYAFLSVAELPDFFRTFNTYTGSLIVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + + L+  EL  FF+ ++TY G+    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  IITGTRPGELRKAEWSEFDFDNRLWEVPPERMKKRRPHCVPLSDQAISILEQLKPL-TGH  294
            I+T TR+GELR ++W E++ ++  W++P+ERMK  RPH VPLSD A+ IL++L++L   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YSYVFPGRIHHSKPISEMAMNVLVRRIGYAGRVTGHGFRHTMSTILHEQGY-NTAWIETQ  353
             +Y   G  +++ P+S+ ++++ ++R+GYAGR   HGFR T ST ++E G  N   IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLDGRREMLQWYADYI  386
            LAH D N++R++YN+A+YL+ R+ M+QW ADYI
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

16) SerAS13_4096 in NC_017573


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  230 bits (856),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 252/393 (65%), Gaps = 15/393 (3%)

Query  1    MPLTDLELRRSKPQDKPY-TLSDGGGLSILIEPNGSKGWRFRYRFDGKPKMLSLGTYPTV  59
            M LTD  ++ +K   + Y  L+DG+GL++ I   GS  W FRY ++G+ + +SLG YP++
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLTDARQKRDEAKKLVASGINPSEARKQQKR---DRQDVTGNTFEGIAREWYVKRRDRW-  115
            S+  AR    E +  +  G++P   RK+++      +    +TFE +AREWY  +R  W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYAEEMMKTFESDVFPYIGHRPIAEIKPMELMGTLSKLDERGATEKLRKVRQRCGEVW  175
            +E  A++++ T+E  VFP+IG +PI+ I P EL+  + KL +R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIVTGRAEYNPAPDLASAFSPHKKEHYAFLSVAELPDFFRTFNTYTGSLIVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + + L+  EL  FF+ ++TY G+    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  IITGTRPGELRKAEWSEFDFDNRLWEVPPERMKKRRPHCVPLSDQAISILEQLKPL-TGH  294
            I+T TR+GELR ++W E++ ++  W++P+ERMK  RPH VPLSD A+ IL++L++L   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YSYVFPGRIHHSKPISEMAMNVLVRRIGYAGRVTGHGFRHTMSTILHEQGY-NTAWIETQ  353
             +Y   G  +++ P+S+ ++++ ++R+GYAGR   HGFR T ST ++E G  N   IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLDGRREMLQWYADYI  386
            LAH D N++R++YN+A+YL+ R+ M+QW ADYI
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

17) SerAS9_4095 in NC_015567


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  230 bits (856),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 252/393 (65%), Gaps = 15/393 (3%)

Query  1    MPLTDLELRRSKPQDKPY-TLSDGGGLSILIEPNGSKGWRFRYRFDGKPKMLSLGTYPTV  59
            M LTD  ++ +K   + Y  L+DG+GL++ I   GS  W FRY ++G+ + +SLG YP++
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLTDARQKRDEAKKLVASGINPSEARKQQKR---DRQDVTGNTFEGIAREWYVKRRDRW-  115
            S+  AR    E +  +  G++P   RK+++      +    +TFE +AREWY  +R  W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYAEEMMKTFESDVFPYIGHRPIAEIKPMELMGTLSKLDERGATEKLRKVRQRCGEVW  175
            +E  A++++ T+E  VFP+IG +PI+ I P EL+  + KL +R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIVTGRAEYNPAPDLASAFSPHKKEHYAFLSVAELPDFFRTFNTYTGSLIVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + + L+  EL  FF+ ++TY G+    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  IITGTRPGELRKAEWSEFDFDNRLWEVPPERMKKRRPHCVPLSDQAISILEQLKPL-TGH  294
            I+T TR+GELR ++W E++ ++  W++P+ERMK  RPH VPLSD A+ IL++L++L   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YSYVFPGRIHHSKPISEMAMNVLVRRIGYAGRVTGHGFRHTMSTILHEQGY-NTAWIETQ  353
             +Y   G  +++ P+S+ ++++ ++R+GYAGR   HGFR T ST ++E G  N   IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLDGRREMLQWYADYI  386
            LAH D N++R++YN+A+YL+ R+ M+QW ADYI
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

18) EC042_3992 in NC_017626


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  227 bits (846),  Expect = 8e-61, Method: Compositional matrix adjust.
 Identities = 165/396 (42%), Positives = 245/396 (62%), Gaps = 21/396 (5%)

Query  1    MALTDIQIKRAKPQDKPY-TLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLV  59
            M LTD  I+ AK   + Y  L DG+GL+L I   GS  W FR+ + G+ R MS+G Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEAREKRDIARKQVANGIDPVEERKALR---LAQKLSTENSFEAICREWHTNKADRWT  116
            S+  AR      R ++ +G+DP+ ERK  +   LA+  +  ++FE + REW   K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  VA-YREEIIKTFEQDVFPFIGKRPISEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVY  175
                 +++I T+EQ VFPFIGK+PIS I P ELL V+ ++  R   E + +V+QR   V+
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKIV  235
             YAI T+R   NPA  L+  +     K +P L+A EL  F+++L++Y G+  T  A +++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTQEMRFATWEEVDLEKGIWEIPAERMKMRRPHIVPLSTQVVDLFKQLKPI-TGH  294
            +LT  R+ E+RF+ W+E  L+   W+IPAERMKM RPHIVPLS   ++++ +L+++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGRNNRNKPISKESVSQVIESLGYKGRATGHGFRHTMSTILHEQGFDSAW----I  350
             PY+  G  NRN P+S  ++S  +  LGY GRA  HGFR T ST ++E G+   W    I
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGL---WNPDAI  358

Query  351  EMQLAHVDKNSIRGTYNHAQYLEGRKKMMNWYANHI  386
            E QLAH D N++R++YN+A+YLE R +MM+W A+ I
Sbjct  359  ERQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

19) Bcep1808_0425 in NC_009256


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  226 bits (843),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 167/394 (43%), Positives = 255/394 (65%), Gaps = 14/394 (3%)

Query  6    LTDAKCRNARFDEAGGNKLFDGGGLYLDLRSSGSKKWRLKYRFNGKENLLTFGDYPATSL  65
            LTD   + A+    G  +L DG+GL L +   GS  W ++Y +NG+E  +++G YPA S+
Sbjct  12   LTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAMSI  71

Query  66   ADARSRRDEAKRLLAEGKNPAFERDVEKQTRAIAAQ----NTFEAVALEWYEAQQATW-S  120
              AR+   E +  L +G +P  ER   KQ+  +A +    +TFE VA EWY+ +++ W +
Sbjct  72   EAARGEALELRYHLRQGLDPLAERK-KKQAAYLAEEKTQKETFEFVAREWYQLKRPEWKN  130

Query  121  ASHANRVKKQLDREVFPLIGQRPISSIGAPDLLAVVRRIEGREAFETARKTLQTCGQVFR  180
              HA++V   L++ VFP+IG++PIS I++P+LL V+ ++ +R   ETA +  Q    VF 
Sbjct  131  EKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVFD  188

Query  181  YAVATSRAERDPSPDLRGALKAVPVKHMARVGESELPELLRSIASYEGEPETRLALRFLA  240
            YA+ T R  R+P+  L   +++   K+ + +   EL  +++ + +Y G+P T LALR+L 
Sbjct  189  YAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLLI  246

Query  241  LTFVRTIELRQAEWTEIDLERREWRIPAEKMKMRRVHIVPLAEQAIALLSELRALTGHRR  300
            LT  R+ ELR ++W E  L+  EW+IPAE+MKM R HIVPL++ A+ +L ELR+L  +  
Sbjct  247  LTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNNS  304

Query  301  WLFPNSRRPLQQMSENTILYALYRMGYRSRMTGHGFRGLASTILNEKGF-NSDWIERQLA  359
              F  + R    +S+ T+  A+ R+GY +R   HGFR+ AST +NE G+ N+D IERQLA
Sbjct  305  PYFVTGNRN-TPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQLA  363

Query  360  HSEQDGVRAAYNHAEYLSERHRMMQWWADYLDKQ  393
            H+++++VRAAYN+AEYL ERHRMMQWWADY+ K+
Sbjct  364  HTDENAVRAAYNRAEYLEERHRMMQWWADYIRKK  397

20) MYA_0364 in NC_017920


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  226 bits (842),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 166/394 (43%), Positives = 255/394 (65%), Gaps = 14/394 (3%)

Query  6    LTDAKCRNARFDEAGGNKLFDGGGLYLDLRSSGSKKWRLKYRFNGKENLLTFGDYPATSL  65
            LTD   + A+    G  +L DG+GL L +   GS  W ++Y +NG+E  +++G YPA S+
Sbjct  12   LTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAMSI  71

Query  66   ADARSRRDEAKRLLAEGKNPAFERDVEKQTRAIAAQ----NTFEAVALEWYEAQQATW-S  120
              AR+   E +  L +G +P  ER   KQ+  +A +    +TFE VA EWY+ +++ W +
Sbjct  72   EAARGEALELRYHLRQGLDPLAERK-KKQAAYLAEEKTQKETFEFVAREWYQLKRPEWKN  130

Query  121  GSHANRVKKQLDREVFPLIGQRPISSIGAPDLLAVIRRIEGREAFETARKTLQTCGQVFR  180
              HA++V   L++ VFP+IG++PIS I++P+LL V+ ++ +R   ETA +  Q    VF 
Sbjct  131  EKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVFD  188

Query  181  YAVATSRAERDPSPDLRGALKAVPVKHMARVGESELPELLRSIAAYEGEPETRLALRFLA  240
            YA+ T R  R+P+  L   +++   K+ + +   EL  +++ + +Y G+P T LALR+L 
Sbjct  189  YAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLLI  246

Query  241  LTFVRTIELRQAEWTEIDLERREWRIPAEKMKMRRVHIVPLAEQTIALLAELRALTGHRR  300
            LT  R+ ELR ++W E  L+  EW+IPAE+MKM R HIVPL++ ++ +L ELR+L  +  
Sbjct  247  LTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNNS  304

Query  301  WLFPNSRRPLQQMSENTILYALYRMGYRSRMTGHGFRGLASTILNEKGF-NSDWIERQLA  359
              F  + R    +S+ T+  A+ R+GY +R   HGFR+ AST +NE G+ N+D IERQLA
Sbjct  305  PYFVTGNRN-TPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQLA  363

Query  360  HSEQDGVRAAYNHAEYLSERHRMMQWWADYLDKQ  393
            H+++++VRAAYN+AEYL ERHRMMQWWADY+ K+
Sbjct  364  HTDENAVRAAYNRAEYLEERHRMMQWWADYIRKK  397

21) A1122_00590 in NC_017168


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  225 bits (839),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 160/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ ++LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

22) YpAngola_A3853 in NC_010159


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  225 bits (839),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 160/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ ++LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

23) YPC_0922 in NC_017265


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  225 bits (839),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 160/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ ++LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

24) int4 in NC_005810


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  225 bits (839),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 160/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ ++LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

25) int in NC_003143


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  225 bits (839),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 160/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ ++LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

26) int in NC_017154


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  225 bits (839),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 160/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ ++LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

27) int in NC_017160


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  225 bits (839),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 160/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ ++LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

28) y3271 in NC_004088


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  225 bits (839),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 160/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ ++LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

29) YPN_3086 in NC_008149


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  225 bits (839),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 160/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ ++LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

30) int in NC_014029


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  225 bits (839),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 160/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ ++LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

31) Dda3937_00938 in NC_014500


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  225 bits (837),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 163/395 (42%), Positives = 247/395 (63%), Gaps = 19/395 (4%)

Query  1    MKLNARQVDTAKPKDKPY-KLSDGGGLYLLVNPNGSRYWRLKYRVDGKEKLLALGVYPAI  59
            M+L  + ++TAK   + Y +L+DG+GL L +   GS +W ++Y ++G+E+ ++LG YPA+
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAQARGKRDEAKRGIAGGIDPNVARREEK---IAREAQIKNTFQDIALEWHASKIKKWS  116
            S+  ARG   E +  +  G+DP   R+  +   +A E   K+TF+ +A EW   K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  AG-YASDIMEAFNKDVFPYIGNKPIAQIKPLELLNVLRRMESRGATEKAKKVRQRCGEVF  175
                A +++ ++++ VFP+IG+KPI++I P ELL+V+ ++  R   E A +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDR--PETASRVKQRIRAVF  187

Query  176  RYAIVTGRAEYNPAPDLTSAMQGHESSHYPFLNAQELPEFFHALSEYTGSKlvllaarll  235
             YAI T+R   NPA  L    ++  + + P L A+EL  FF  L  Y  +K   LA RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ilTGVRTGELRAANWQEIDTENARWEIPAERMKMRRPHCVPLSRQAIAILDEIREMTGRY  295
            ILT  R+GELR ++WQE++ ++  W+IPAERMKM RPH VPLS  A+ ILDE+R +    
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  296  PLVFPGRNDPRNTMSEASINQVFKRIGYAGRVTGHGFRHTMSTILHEQGYNTAW----IE  351
            +  F    +    +S+++++   KR+GYAGR   HGFR T ST ++E G    W    IE
Sbjct  304  SPYFVT-GNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESG---LWNPDAIE  359

Query  352  TQLAHVDKNAIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D NA+R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

32) ENC_02820 in NC_021046


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  224 bits (836),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 161/391 (42%), Positives = 246/391 (63%), Gaps = 15/391 (3%)

Query  1    MALTDIQIKRAKPQDKPY-TLNDGQGLSMLINPDGSKGWRFRFRLAGKARLMSFGSYDLV  59
            M LTD  I+ AK   + Y  L DG+GL++ I   GS  W FR+ + G+ R MS+G Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEAREKRDTARKQVANGIDPVEERKALK---LAQKLSTENSFESVSREWHSTKADRWT  116
            S+  AR      R ++ +G+DP+ ERK  +   LA+  +  ++FE V+REW   K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  VA-YREEIIKTFEQDVFPFIGKRPIGEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVF  175
                 +++I T+EQ VFPFIGK+PI+ I P ELL V+ ++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLAIALAVHKQKHHPFLSSEELPHFIRDLEAYTGSIITKNATKII  235
             YAI T+R   NPA  L+  +     K +P L++ EL  F+++L++Y G+  T  A +++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTQEMRFATWDEVDLDKGVWQIPAERMKMRRPHLVPLSTQVIDLFKQLKPI-TGH  294
            +LT  R+ E+RF+ W+E  L+   W+IPAERMKM RPH+VPLS   ++++ +L+++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGRNNRSKPISKETVSQVIELLGYKGRATGHGFRHTMSTILHEQGF-ESAWIEMQ  353
             PY+  G  NR+ P+S  T+S  +  LGY GRA  HGFR T ST ++E G+ ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHADKNKIRGIYNHAQYLEERKKMLQWYSN  384
            LAH+D N +R+ YN+A+YLEER +M+QW ++
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWAD  392

33) YPDSF_0629 in NC_009381


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  224 bits (836),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 160/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ ++LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWVEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

34) ETAE_3428 in NC_013508


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  224 bits (836),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 160/393 (41%), Positives = 251/393 (64%), Gaps = 15/393 (3%)

Query  1    MALSDIQIKRAKPQDKPY-TLNDGQGLSILIKPDGSKGWRFRFRFAGKARLMSFGSYDLV  59
            M L+D  I+ AK   + Y  L DG+GL++ I   GS  W FR+ + G+ R MS+G Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEAREKREVARKQVANGIDPVEERKAQK---LAQQLSTENSFEAISREWHANKADRWT  116
            S+  AR      R ++ +G+DP+ ERK ++   LA++ +  ++FE ++REW   K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  VA-YRDEIIKTFEQDVFPFIGKRPIGEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVF  175
                 +++I T+EQ VFPFIGK+PI+ I P ELL V+ ++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKIV  235
             YAI T+R   NPA  L+  +     K +P L+A EL  F+++L++Y G+  T  A +++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTQEMRFATWDEVDFDKRIWEIPAERMKMRRPHIVPLSTQAMELFKQLQPI-TGH  294
            +LT  R+ E+RF+ W+E++ +   W+IPAERMKM RPHIVPLS  A+E++ +L+++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGRNNRRKPISKESINQVIELLGYKGRATGHGFRHTMSTILHEQGF-DSAWIEIQ  353
             PY+  G  NR  P+S  +++  +  LGY GRA  HGFR T ST ++E G+ ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLEKRREMLQWYSNYL  386
            LAH D N++R++YN+A+YLE R+ M+QW ++Y+
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

35) Tint_2069 in NC_014153


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  224 bits (834),  Expect = 6e-60, Method: Compositional matrix adjust.
 Identities = 158/390 (41%), Positives = 238/390 (62%), Gaps = 20/390 (5%)

Query  1    MSLTVKAVDAAKPQERPY-KLTDGGGLYLFVAPTGLKSWRANYELNGKQRTRTYGRYPAM  59
            M LT K +++AK   R Y +LTDG+GL L ++  G   W   Y +NG++R  + GRYPAM
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   TLAQAREAHTQ------------AKSTPAEAATVTPIAKVAPTFKAITEQWLKIKLPSLS  107
            ++  AR    +            A     +AA ++       TF  ++ +W ++K P   
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  108  NGKHQGQVAGTLERFAYPAIGKLPIDQIPRTKLVEVVQAVQKGGRVETAHRVAGRIAAVF  167
            N KH  QV  TLE+F +P IGK PI +I+   L+ V++ +   +R ETA RV  RI AVF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLY--DRPETASRVKQRIRAVF  187

Query  168  DYAQDVGYIESHGAAGLVRVLQPRKVKKPMASIPPGEAGALLAAIDGYEEPVTRLGLQLL  227
            DYA + + +  + A +L +++++   K+P  S+P+ E G ++  +D Y +P T L+L+LL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQP--SLPARELGIFFKQLDTYGNPKTALALRLL  245

Query  228  ALTFVRVGEMRGMRWSELREDGTVWVVPADRMKAGLPHVVPLSQQARAVLEQLRVLTGDR  287
             LT  R GE+R  +W EL  +G  W +PA+RMK   PH+VPLS+ A  +L++LR L  + 
Sbjct  246  ILTMTRSGELRFGQWQEL--QGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  288  NLVLDSPLRPGHALSENTFLFALYRLGYRGRMTAHGFRALASTVLNEQSGFAHDVIERQL  347
            +  + +  R   +LS+ T+ +A+ RLGY GR  +HGFRA AST +NE +    D IERQL
Sbjct  304  SPYFVTGNRNT-PLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQL  362

Query  348  AHRETDTVRAAYNRAQYLDQRRGLMQWWAD  377
            AH + ++VRAAYNRA+YL++R+ +MQWWAD
Sbjct  363  AHTDENAVRAAYNRAEYLEERHRMMQWWAD  392

36) YpsIP31758_0884 in NC_009708


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  224 bits (834),  Expect = 6e-60, Method: Compositional matrix adjust.
 Identities = 159/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLAVGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ +++G YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

37) int in NC_006155


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  224 bits (834),  Expect = 6e-60, Method: Compositional matrix adjust.
 Identities = 159/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLAVGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ +++G YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

38) YPTS_3293 in NC_010634


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  224 bits (834),  Expect = 6e-60, Method: Compositional matrix adjust.
 Identities = 159/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLAVGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ +++G YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

39) YPK_0925 in NC_010465


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  224 bits (834),  Expect = 6e-60, Method: Compositional matrix adjust.
 Identities = 159/395 (41%), Positives = 251/395 (64%), Gaps = 19/395 (4%)

Query  1    MKLNARQVETAKPKDKAY-KLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLAVGVYPDV  59
            M+L  + ++TAK   ++Y +L+DG+GL L +   GS +W ++Y + G+E+ +++G YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAVARVKRDEAKKIVAGGGDP---SQNKQQEKLARQGEATNTFEAITREWYQRRYDRW-  115
            S+  AR    E +  +  G DP    ++KQ   LA +    +TFE ++REWYQ +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SESYRLEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVW  175
            +E    ++++T+E  VFP+IG +PI  I P EL+ V+ KL  R  T    +V+QR   V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETAS--RVKQRIRAVF  187

Query  176  KYAIITGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLL  235
             YAI T+R   NPA  L+  F +    + P L   E+  F+  L +Y+ +    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPK-TALALRLL  245

Query  236  ILTGTRPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPI---S  292
            ILT TR+GELR ++W E++ ++  W+IPA RMKM RPH+VPL+D A+ IL +++++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIE  351
            + Y FV   R   + P+S+ TL++ ++R+GY+GRA  HGFR T ST ++E G+ N   IE
Sbjct  304  SPY-FVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  352  TQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYM  386
             QLAH D N++R++YN+A+YL+ R+ M+QW ADY+
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

40) SMWW4_v1c00920 in NC_020211


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  224 bits (834),  Expect = 7e-60, Method: Compositional matrix adjust.
 Identities = 163/393 (42%), Positives = 248/393 (64%), Gaps = 15/393 (3%)

Query  1    MLLTDIQIRRSKPQEKPY-TLNDGQGLSLLINTDGSKGWRFRYRYAGKAKLMSFGTYPLV  59
            M LTD  I+ +K   + Y  L DG+GL+L I   GS  W FRY   G+ + MS+G YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   TLADAREKRGEARKQVANGIDPVAEKKAQK---LARKLSVENSFEAISREWHTNKANRWT  116
            ++  AR    E R ++ +G+DP+AE+K ++   LA   +  ++FE ++REW   K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LA-YREEIMRTFEQDVFPYIGQRPIAEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVF  175
                 ++++ T+EQ VFP+IG++PI+ I P ELL V+ ++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLASALAVPKQKHHPFLSAEELPYFVKDLEGYTGSIITKNAAKIV  235
             YAI T+R   NPA  L+  +     K +P L+A EL  F K+L+ Y G+  T  A +++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTQEMRFATWEEIDFERGIWEIPAERMKMRRPHIVPLSTQAVELLKQLQPI-TGH  294
            +LT  R+ E+RF+ W+E+  +   W+IPAERMKM RPHIVPLS  A+E+L +L+++   +
Sbjct  246  ILTMTRSGELRFGQWQEL--QGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGRNNRRKPISKESVNQVIELLGYKGRATGHGFRHTMSTILHEQGF-DSAWIEMQ  353
             PY+  G  NR  P+S  +++  +  LGY GRA  HGFR T ST ++E G+ ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNGIRGTYNHAQYLEKRRVMLQWYADFI  386
            LAH D N++R++YN+A+YLE R+ M+QW AD+I
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

41) EcSMS35_4002 in NC_010498


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  222 bits (828),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 162/391 (42%), Positives = 245/391 (63%), Gaps = 15/391 (3%)

Query  1    MALTDIQIKRAKPQDKPY-TLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLV  59
            M LTD  I+ AK   + Y  L DG+GL+L I   GS  W FR+ + G+ R MS+G Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEAREKRDIARKQVANGIDPVEERKALR---LAQKLSTENSFEAICREWHTNKADRWT  116
            S+  AR      R ++ +G+DP+ ERK  +   LA+  +  ++FE + REW   K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  VA-YREEIIKTFEQDVFPFIGKRPISEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVY  175
                 +++I T+EQ VFPFIGK+PIS I P ELL V+ ++  R   E + +V+QR   V+
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKIV  235
             YAI T+R   NPA  L+  +     K +P L+A EL  F+++L++Y G+  T  A +++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTQEMRFATWEEVDLEKGIWEIPAERMKMRRPHIVPLSTQVVDLFKQLKPI-TGH  294
            +LT  R+ E+RF+ W+E  L+   W+IPAERMKM RPHIVPLS   ++++ +L+++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGRNNRSKPISKESVSQVIELIGYKGRATGHGFRHTMSTILHEQGF-DSAWIEIQ  353
             PY+  G  NR+ P+S  ++S  +  +GY GRA  HGFR T ST ++E G+ ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNRIRGTYNHAQYLEHRKKMMQWYSD  384
            LAH D N +R++YN+A+YLE+R +MMQW +D
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWAD  392

42) intB in NC_020409


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  222 bits (826),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 159/397 (41%), Positives = 251/397 (64%), Gaps = 21/397 (5%)

Query  1    MPLTDAKIKAAKPKSKEF-TLNDGEGLSLVVNPKGRKWWRFRYQINGKRTMLSLGPYPYI  59
            M LTD  I++AK  S+ +  L DG+GL+L +  +G   W FRY ING+   +SLG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLQEARLKRGDLKTLIAQGHDP--SRKRKEDK---RKASASEAFEAIAREWFGKQVGSGW  114
            S++ AR    +L+  + QG DP   RK+K+        +  E+FE +AREW+  +  + W
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLK-RPEW  128

Query  115  -SERHAKTTMERMKKNIFPFIGDRPISELGVEDMLGVVQRCEKRGAVETARRIRQIMSQV  173
             +E+HA+  +  + + +FPFIG +PIS ++  ++L V+++   R   ETA R++Q +  V
Sbjct  129  KNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAV  186

Query  174  FRYAVAAGRAERDPAADIKGALPPARKVKHHPSITDPKEIGPLLRAVDGFSGTLVVHCAL  233
            F YA+ ++R  R+PA  +   + ++  +  +PS+  ++E+G +++ +D ++       AL
Sbjct  187  FDYAIQTDRLSRNPAIALPKIFRST--IAKQPSLP-ARELGIFFKQLDTYGNPKTAL-AL  242

Query  234  RFAPLVFVRPGELRNAEWGEVDLEGSEWRIPAEKMKGGSPHIVPLSTQAVEVLTELHPLT  293
            R+  L   R+GELR ++W E  L+G+EW+IPAE+MK   PHIVPLS  A+E+L EL++L 
Sbjct  243  RLLILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLR  300

Query  294  -GPSGYVFPSVRTSARPMSENTINVSLRRIGYDKTEMTGHGFRSMASTLLNEHG-WHKDA  351
               S Y   + R +  P+S+ T++++++R+GY    +  HGFR+ AST +NE G W+ DA
Sbjct  301  RNNSPYFVTGNRNT--PLSDTTLSLAMKRLGYAGRAVP-HGFRATASTAMNESGLWNPDA  357

Query  352  IERQLAHTPKDKVRASYNYAEHLPERKLMMQAWADYL  388
            IERQLAHT  + VRA+YN AE L ER  MMQ WADY+
Sbjct  358  IERQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

43) A3UG_00595 in NC_018079


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  222 bits (826),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 160/396 (41%), Positives = 249/396 (63%), Gaps = 13/396 (3%)

Query  1    MALTDIQIKRAKPQDKPY-TLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYGLV  59
            M LTD  I+ AK   + Y  L DG+GL+L I   GS  W FR+ + G+ R MS+G Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEAREKRETARKQVANCIDPVQERKAQK---LAQQLSTENSFESICREWHANKANRWT  116
            S+  AR      R ++ + +DP+ ERK ++   LA++ +  ++FE + REW   K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  VA-YREEIIKTFEQDVFPFIGKRPISEIKPLELLEVLRRIENRGALEKTRKVRQRCGEVY  175
                 +++I T+EQ VFPFIGK+PIS I P ELL V+ ++ +R   E + +V+QR   V+
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAVITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIQDLEAYTGSIITKNATKIV  235
             YA+ T+R   NPA  L+  +     K +P L+A EL  F+++L++Y G+  T  A +++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTQEMRFATWEEVDLEKGIWEIPAERMKMRRPHIVPLSTQVIDLFKQLKPITQNY  295
            +LT  R+ E+RF+ W+E  L+   W+IPAERMKM RPHIVPLS   ++++ +L+++ +N 
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  296  PYIFIGRNNRSKPISKESVSHVIELLGYKGRATGHGFRHTMSTILHEKGF-DTQWIELQL  354
            +  F+   NR+ P+S  ++S  +  LGY GRA  HGFR T ST ++E G+ + + IE QL
Sbjct  304  SPYFVT-GNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQL  362

Query  355  AHIDKNSIRGIYNHALHIENRRIMLQWYADYLYSKV  390
            AH D N++R+ YN+A  +E+R+ M+QW ADY+  K+
Sbjct  363  AHTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKI  398

44) A1122_05665 in NC_017168


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  222 bits (825),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 249/393 (64%), Gaps = 15/393 (3%)

Query  1    MPLSDRQIRRAKPQEKAY-TLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLV  59
            M L+D+ I+ AK   ++Y  L+DG+GL+L I   GS  W FRY + G+ R MSLG Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARSKRDVARKQVADGTDPAEVKKAEK---LAQRLSSENSFEAISREWHKAKADRWS  116
            S+  AR+     R ++ +G DP   +K  +   LA+  +  ++FE ++REW + K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LG-YREEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVF  175
                 +++++T+E  +FP+IGK+PI+ I+P ELL V++++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKIL  235
             YAI T+R   NPA  L+  + +   ++ P L+A E+  F+++L+ Y G+  T  A ++L
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPI-TGH  294
            +LT  R+ E+RF+ WQE  L+G  W+IPAERMKM RPHIVPLS   + ++ +L ++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQG-YDSAWIELQ  353
             PY+  G  +R+ P+S  T++  +  LGY GRA  HGFR T ST ++E G  ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLEKRREMLQWYADLI  386
            LAH D N++R++YN+A+YLE R+ M+QW AD I
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

45) YPA_4123 in NC_008150


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  222 bits (825),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 249/393 (64%), Gaps = 15/393 (3%)

Query  1    MPLSDRQIRRAKPQEKAY-TLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLV  59
            M L+D+ I+ AK   ++Y  L+DG+GL+L I   GS  W FRY + G+ R MSLG Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARSKRDVARKQVADGTDPAEVKKAEK---LAQRLSSENSFEAISREWHKAKADRWS  116
            S+  AR+     R ++ +G DP   +K  +   LA+  +  ++FE ++REW + K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LG-YREEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVF  175
                 +++++T+E  +FP+IGK+PI+ I+P ELL V++++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKIL  235
             YAI T+R   NPA  L+  + +   ++ P L+A E+  F+++L+ Y G+  T  A ++L
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPI-TGH  294
            +LT  R+ E+RF+ WQE  L+G  W+IPAERMKM RPHIVPLS   + ++ +L ++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQG-YDSAWIELQ  353
             PY+  G  +R+ P+S  T++  +  LGY GRA  HGFR T ST ++E G  ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLEKRREMLQWYADLI  386
            LAH D N++R++YN+A+YLE R+ M+QW AD I
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

46) xerC4 in NC_005810


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  222 bits (825),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 249/393 (64%), Gaps = 15/393 (3%)

Query  1    MPLSDRQIRRAKPQEKAY-TLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLV  59
            M L+D+ I+ AK   ++Y  L+DG+GL+L I   GS  W FRY + G+ R MSLG Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARSKRDVARKQVADGTDPAEVKKAEK---LAQRLSSENSFEAISREWHKAKADRWS  116
            S+  AR+     R ++ +G DP   +K  +   LA+  +  ++FE ++REW + K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LG-YREEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVF  175
                 +++++T+E  +FP+IGK+PI+ I+P ELL V++++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKIL  235
             YAI T+R   NPA  L+  + +   ++ P L+A E+  F+++L+ Y G+  T  A ++L
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPI-TGH  294
            +LT  R+ E+RF+ WQE  L+G  W+IPAERMKM RPHIVPLS   + ++ +L ++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQG-YDSAWIELQ  353
             PY+  G  +R+ P+S  T++  +  LGY GRA  HGFR T ST ++E G  ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLEKRREMLQWYADLI  386
            LAH D N++R++YN+A+YLE R+ M+QW AD I
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

47) YPO4033 in NC_003143


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  222 bits (825),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 249/393 (64%), Gaps = 15/393 (3%)

Query  1    MPLSDRQIRRAKPQEKAY-TLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLV  59
            M L+D+ I+ AK   ++Y  L+DG+GL+L I   GS  W FRY + G+ R MSLG Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARSKRDVARKQVADGTDPAEVKKAEK---LAQRLSSENSFEAISREWHKAKADRWS  116
            S+  AR+     R ++ +G DP   +K  +   LA+  +  ++FE ++REW + K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LG-YREEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVF  175
                 +++++T+E  +FP+IGK+PI+ I+P ELL V++++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKIL  235
             YAI T+R   NPA  L+  + +   ++ P L+A E+  F+++L+ Y G+  T  A ++L
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPI-TGH  294
            +LT  R+ E+RF+ WQE  L+G  W+IPAERMKM RPHIVPLS   + ++ +L ++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQG-YDSAWIELQ  353
             PY+  G  +R+ P+S  T++  +  LGY GRA  HGFR T ST ++E G  ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLEKRREMLQWYADLI  386
            LAH D N++R++YN+A+YLE R+ M+QW AD I
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

48) YPD4_3547 in NC_017154


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  222 bits (825),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 249/393 (64%), Gaps = 15/393 (3%)

Query  1    MPLSDRQIRRAKPQEKAY-TLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLV  59
            M L+D+ I+ AK   ++Y  L+DG+GL+L I   GS  W FRY + G+ R MSLG Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARSKRDVARKQVADGTDPAEVKKAEK---LAQRLSSENSFEAISREWHKAKADRWS  116
            S+  AR+     R ++ +G DP   +K  +   LA+  +  ++FE ++REW + K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LG-YREEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVF  175
                 +++++T+E  +FP+IGK+PI+ I+P ELL V++++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKIL  235
             YAI T+R   NPA  L+  + +   ++ P L+A E+  F+++L+ Y G+  T  A ++L
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPI-TGH  294
            +LT  R+ E+RF+ WQE  L+G  W+IPAERMKM RPHIVPLS   + ++ +L ++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQG-YDSAWIELQ  353
             PY+  G  +R+ P+S  T++  +  LGY GRA  HGFR T ST ++E G  ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLEKRREMLQWYADLI  386
            LAH D N++R++YN+A+YLE R+ M+QW AD I
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

49) YPD8_3553 in NC_017160


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  222 bits (825),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 249/393 (64%), Gaps = 15/393 (3%)

Query  1    MPLSDRQIRRAKPQEKAY-TLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLV  59
            M L+D+ I+ AK   ++Y  L+DG+GL+L I   GS  W FRY + G+ R MSLG Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARSKRDVARKQVADGTDPAEVKKAEK---LAQRLSSENSFEAISREWHKAKADRWS  116
            S+  AR+     R ++ +G DP   +K  +   LA+  +  ++FE ++REW + K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LG-YREEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVF  175
                 +++++T+E  +FP+IGK+PI+ I+P ELL V++++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKIL  235
             YAI T+R   NPA  L+  + +   ++ P L+A E+  F+++L+ Y G+  T  A ++L
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPI-TGH  294
            +LT  R+ E+RF+ WQE  L+G  W+IPAERMKM RPHIVPLS   + ++ +L ++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQG-YDSAWIELQ  353
             PY+  G  +R+ P+S  T++  +  LGY GRA  HGFR T ST ++E G  ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLEKRREMLQWYADLI  386
            LAH D N++R++YN+A+YLE R+ M+QW AD I
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

50) y4052 in NC_004088


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  222 bits (825),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 249/393 (64%), Gaps = 15/393 (3%)

Query  1    MPLSDRQIRRAKPQEKAY-TLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLV  59
            M L+D+ I+ AK   ++Y  L+DG+GL+L I   GS  W FRY + G+ R MSLG Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARSKRDVARKQVADGTDPAEVKKAEK---LAQRLSSENSFEAISREWHKAKADRWS  116
            S+  AR+     R ++ +G DP   +K  +   LA+  +  ++FE ++REW + K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LG-YREEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVF  175
                 +++++T+E  +FP+IGK+PI+ I+P ELL V++++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKIL  235
             YAI T+R   NPA  L+  + +   ++ P L+A E+  F+++L+ Y G+  T  A ++L
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPI-TGH  294
            +LT  R+ E+RF+ WQE  L+G  W+IPAERMKM RPHIVPLS   + ++ +L ++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQG-YDSAWIELQ  353
             PY+  G  +R+ P+S  T++  +  LGY GRA  HGFR T ST ++E G  ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLEKRREMLQWYADLI  386
            LAH D N++R++YN+A+YLE R+ M+QW AD I
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

51) YPN_3680 in NC_008149


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  222 bits (825),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 249/393 (64%), Gaps = 15/393 (3%)

Query  1    MPLSDRQIRRAKPQEKAY-TLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLV  59
            M L+D+ I+ AK   ++Y  L+DG+GL+L I   GS  W FRY + G+ R MSLG Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARSKRDVARKQVADGTDPAEVKKAEK---LAQRLSSENSFEAISREWHKAKADRWS  116
            S+  AR+     R ++ +G DP   +K  +   LA+  +  ++FE ++REW + K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LG-YREEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVF  175
                 +++++T+E  +FP+IGK+PI+ I+P ELL V++++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKIL  235
             YAI T+R   NPA  L+  + +   ++ P L+A E+  F+++L+ Y G+  T  A ++L
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPI-TGH  294
            +LT  R+ E+RF+ WQE  L+G  W+IPAERMKM RPHIVPLS   + ++ +L ++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQG-YDSAWIELQ  353
             PY+  G  +R+ P+S  T++  +  LGY GRA  HGFR T ST ++E G  ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLEKRREMLQWYADLI  386
            LAH D N++R++YN+A+YLE R+ M+QW AD I
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

52) YPDSF_3775 in NC_009381


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  222 bits (825),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 249/393 (64%), Gaps = 15/393 (3%)

Query  1    MPLSDRQIRRAKPQEKAY-TLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLV  59
            M L+D+ I+ AK   ++Y  L+DG+GL+L I   GS  W FRY + G+ R MSLG Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARSKRDVARKQVADGTDPAEVKKAEK---LAQRLSSENSFEAISREWHKAKADRWS  116
            S+  AR+     R ++ +G DP   +K  +   LA+  +  ++FE ++REW + K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LG-YREEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVF  175
                 +++++T+E  +FP+IGK+PI+ I+P ELL V++++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKIL  235
             YAI T+R   NPA  L+  + +   ++ P L+A E+  F+++L+ Y G+  T  A ++L
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPI-TGH  294
            +LT  R+ E+RF+ WQE  L+G  W+IPAERMKM RPHIVPLS   + ++ +L ++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQG-YDSAWIELQ  353
             PY+  G  +R+ P+S  T++  +  LGY GRA  HGFR T ST ++E G  ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLEKRREMLQWYADLI  386
            LAH D N++R++YN+A+YLE R+ M+QW AD I
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

53) YpAngola_A4153 in NC_010159


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  221 bits (822),  Expect = 6e-59, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 248/393 (64%), Gaps = 15/393 (3%)

Query  1    MPLSDRQIRRAKPQEKAY-TLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLV  59
            M L+D+ I+ AK   ++Y  L+DG+GL+L I   GS  W FRY + G+ R MSLG Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARSKRDVARKQVADGTDPAEVKKAEK---LAQRLSSEKSFEAISREWHKAKADRWS  116
            S+  AR+     R ++ +G DP   +K  +   LA+  +   +FE ++REW + K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LG-YREEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVF  175
                 +++++T+E  +FP+IGK+PI+ I+P ELL V++++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKIL  235
             YAI T+R   NPA  L+  + +   ++ P L+A E+  F+++L+ Y G+  T  A ++L
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPI-TGH  294
            +LT  R+ E+RF+ WQE  L+G  W+IPAERMKM RPHIVPLS   + ++ +L ++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQG-YDSAWIELQ  353
             PY+  G  +R+ P+S  T++  +  LGY GRA  HGFR T ST ++E G  ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLEKRREMLQWYADLI  386
            LAH D N++R++YN+A+YLE R+ M+QW AD I
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

54) SARI_03887 in NC_010067


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  220 bits (819),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 165/391 (43%), Positives = 247/391 (64%), Gaps = 15/391 (3%)

Query  1    MALTDIQIKRAKPQDKPY-TLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLV  59
            M LTD  I+ AK   + Y  L DG+GL+L I   GS  W FR+ + G+ R MS+G Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLaearekrdaarkQVANGIDPVEERKALK---LAQKLSTENSFESVSREWHSTKADRWT  116
            S+  AR      R ++ +G+DP+ ERK  +   LA+  +  ++FE V+REW   K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  VA-YREEIIKTFEQDVFPFIGKRPIGEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVF  175
                 +++I T+EQ VFPFIGK+PI+ I P ELL V+ ++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKIV  235
             YAI T+R   NPA  L+  +     K +P L+A EL  F+++L++Y G+  T  A +++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTQEMRFATWDEVNLEKGIWEIPAERMKMRRPHIVPLSTQVIDLFKQLKPI-TGH  294
            +LT  R+ E+RF+ W+E  L+   W+IPAERMKM RPHIVPLS   ++++ +L+++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGRNNRSKPISKESVSQVIELLGYKGRATGHGFRHTMSTILHEQGF-DSAWIEIQ  353
             PY+  G  NR+ P+S  ++S  +  LGY GRA  HGFR T ST ++E G+ ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHTDKNAIRGTYNHAIYLENRRIMLQWYSD  384
            LAHTD NA+R++YN+A YLE+R+ M+QW +D
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWAD  392

55) EcolC_0053 in NC_010468


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  220 bits (819),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 161/398 (41%), Positives = 249/398 (63%), Gaps = 15/398 (3%)

Query  1    MALTDTQIKRAKPQDKPY-TLNDGQGLSLLINPDGTKGWRFRFRFAGKARLMSFGSYDLV  59
            M LTD  I+ AK   + Y  L DG+GL+L I   G+  W FR+ + G+ R MS+G Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEAREKRDIARKQVANGIDPVEERKALR---LAQKLSTENSFEAICREWHTNKADRWT  116
            S+  AR      R ++ +G+DP+ ERK  +   LA+  +  ++FE + REW   K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  VA-YREEIMKTFEQDVFPFIGKRPISEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVY  175
                 ++++ T+EQ VFPFIGK+PIS I P ELL V+ ++  R   E + +V+QR   V+
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIQDLEAYTGSIITKNATKIV  235
             YAI T+R   NPA  L+  +     K +P L+A EL  F+++L++Y G+  T  A +++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTQEMRLATWNEVDLEKGIWEIPAERMKMRRPHIVPLSTQVIALFEQLKPI-TGH  294
            +LT  R+ E+R++ W+E  L+   W+IPAERMKM RPHIVPLS   + ++++L+++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGRNNRSKPISKESVSQVIELLGYKGRATGHGFRHSLSTILHEHGF-DSAWIEMQ  353
             PY+  G  NR+ P+S  ++S  +  LGY GRA  HGFR + ST ++E G+ ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLEKRLHMMQWYSDLLYPKIK  391
            LAH D N++R++YN+A+YLE R +MMQW +D +  KI+
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKIR  399

56) ECO26_4941 in NC_013361


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  220 bits (821),  Expect = 7e-59, Method: Compositional matrix adjust.
 Identities = 163/394 (42%), Positives = 245/394 (63%), Gaps = 21/394 (5%)

Query  1    MALTDIQIKRAKPQDKPY-TLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLV  59
            M LTD  I+ AK   + Y  L DG+GL+L I   GS  W FR+ + G+ R MS+G Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEAREKRDIARKQVANGIDPVEERKAQK---LAQKLSTKNSFESVSREWHAAKADRWT  116
            S+  AR      R ++ +G+DP+ ERK ++   LA+  + K++FE V+REW   K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LA-YREEIIKTFEQDVFPFIGKRPIAEIKPLELLEVLKRIEKRGALEKTRKVRQRCGEVF  175
                 +++I T+EQ VFPFIGK+PI+ I P ELL V+ ++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFVRDLEAYTGSIITKNATKIV  235
             YAI T+R   NPA  L+  +     K +P L+A EL  F ++L++Y G+  T  A +++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTQEMRFATWQELDLEKGLWEIPAERMKMRRPHIVPLSRQVIRLFQQLKPI-TGH  294
            +LT  R+ E+RF+ WQEL+ +   W+IPAERMKM RPHIVPLS   + ++++L+++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGRNNRKKPISKESINQVIELLGFKGRITGHGFRHTMSTILHEAGFNSAW----I  350
             PY+  G  NR+ P+S  +++  +  LG+ GR   HGFR T ST ++E+G+   W    I
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGL---WNPDAI  358

Query  351  EMQLAHVDKNSIRGVYNHAQYLNGRSRMLQFYAD  384
            E QLAH D N++R+ YN+A+YL+ R RM+Q  AD
Sbjct  359  ERQLAHTDENAVRAAYNRAEYLEERHRMMQWWAD  392

57) SEEH1578_04845 in NC_021810


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  220 bits (821),  Expect = 7e-59, Method: Compositional matrix adjust.
 Identities = 163/394 (42%), Positives = 245/394 (63%), Gaps = 21/394 (5%)

Query  1    MALTDIQIKRAKPQDKPY-TLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLV  59
            M LTD  I+ AK   + Y  L DG+GL+L I   GS  W FR+ + G+ R MS+G Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEAREKRDIARKQVANGIDPVEERKAQK---LAQKLSTKNSFESVSREWHAAKADRWT  116
            S+  AR      R ++ +G+DP+ ERK ++   LA+  + K++FE V+REW   K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LA-YREEIIKTFEQDVFPFIGKRPIAEIKPLELLEVLKRIEKRGALEKTRKVRQRCGEVF  175
                 +++I T+EQ VFPFIGK+PI+ I P ELL V+ ++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFVRDLEAYTGSIITKNATKIV  235
             YAI T+R   NPA  L+  +     K +P L+A EL  F ++L++Y G+  T  A +++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTQEMRFATWQELDLEKGLWEIPAERMKMRRPHIVPLSRQVIRLFQQLKPI-TGH  294
            +LT  R+ E+RF+ WQEL+ +   W+IPAERMKM RPHIVPLS   + ++++L+++   +
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGRNNRKKPISKESINQVIELLGFKGRITGHGFRHTMSTILHEAGFNSAW----I  350
             PY+  G  NR+ P+S  +++  +  LG+ GR   HGFR T ST ++E+G+   W    I
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGL---WNPDAI  358

Query  351  EMQLAHVDKNSIRGVYNHAQYLNGRSRMLQFYAD  384
            E QLAH D N++R+ YN+A+YL+ R RM+Q  AD
Sbjct  359  ERQLAHTDENAVRAAYNRAEYLEERHRMMQWWAD  392

58) Selin_1494 in NC_014836


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  220 bits (820),  Expect = 8e-59, Method: Compositional matrix adjust.
 Identities = 157/390 (41%), Positives = 251/390 (65%), Gaps = 12/390 (3%)

Query  8    LTVKQIDSAKPKDKQY-RLYDGGGLVFTIKPNGGKYWIMRYRYEKKSHELHLGTYPEVPL  66
            LT K I++AK   + Y RL DG+GL + I   G+ +W  RY  + + +++ LG YP +++
Sbjct  12   LTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAMSI  71

Query  67   SKAREFREEVRVQVAAGIDPKRYREEAENQLL---RQKEGSFESVARSWCEIQKPRW-TE  122
              AR    E+R ++  G+DP   R   +   L   + +  +FE VAR W ++++P W  E
Sbjct  72   EAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWKNE  131

Query  123  RHGSDVINSLETNVFPYIGSRPIYELKPRELLDVVKVIDDRGASEIARRVLQRISAIYDY  182
            +H+ +VI +LE  VFP+IG +PI  + P ELL V+  + DR  +E A RV QRI A++DY
Sbjct  132  KHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDR--PETASRVKQRIRAVFDY  189

Query  183  AFAHGLVELNPTAGLVKGLKPQKKQNFAALSAEEVPELVRAIEGYHGHPItklalklcll  242
            A+  + +  NP+ +L K +++   ++ ++L+A E+  + + ++ Y G+P T LAL+L +L
Sbjct  190  AIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLLIL  247

Query  243  taSRTNEIRFASWQEFDLDNTLWCIPAERMKMRRDHRVPLSRQAVAVVEELIQYSGKNKY  302
            T +R+ E+RF+ WQE  L+   W IPAERMKM R H VPLS  A+ +++EL     +N  
Sbjct  248  TMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNNSP  305

Query  303  LFPNQNKPHTPITENTMLYALYRMGFHKRSTVHGFRTLFSTIANEKSDFSADAVERQLAH  362
             F   N+ +TP+++ T+  A+ R+G+  R+  HGFR+  ST  NE +  ++DA+ERQLAH
Sbjct  306  YFVTGNR-NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQLAH  364

Query  363  QEQNRIRAAYHRADYLDERRELMQWWADYL  392
             ++N +RAAY+RA+YL+ER+ +MQWWADY+
Sbjct  365  TDENAVRAAYNRAEYLEERHRMMQWWADYI  394

59) Mpe_A1087 in NC_008825


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  220 bits (820),  Expect = 8e-59, Method: Compositional matrix adjust.
 Identities = 160/398 (41%), Positives = 253/398 (64%), Gaps = 26/398 (6%)

Query  1    MKLTDLKLRTLTQSGKHF----DGGGLYLEVTAAGGRYWRMKYRHGGKEKRLAFGVYPEV  56
            M+LTD  ++T  ++++ +    DG+GL L +T  G+ +W  +Y   G+E+ +++G YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  57   TLraardrrdearrVLDQGGDPGELRKaakaq---aaheaSNTFEAVARDWLTHQADSWE  113
            ++ AAR+   E R  L QG DP   RK  +A          +TFE VAR+W   +   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  114  AVTLAR-IKAAFKADVFPQLGARPMAQIKPREVATVVKAIEARGAGDMAARVLQRIRAVF  172
                A+ + +++   VFP +G +P+++I P E+  V+  +  R   + A+RV QRIRAVF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  173  RFAVVHERIDSNPMLDLQPGELLKPRQVRHRAALADRDLPVFLEKLAAYDGDVSTSAALR  232
             +A+  +R+  NP + L    ++++   ++ ++L+ R+L +F+ +L +Y G+  T+ ALR
Sbjct  188  DYAIQTDRLSRNPAIALP--KIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALR  243

Query  233  LLMLTAVRPGELRGARWDEIDMDAAEWRIPAERMKMRSPHVVPLSRQALDVLQLMQPLSG  292
            LL+LT  R+GELR ++W+E  +++ EW+IPAERMKM  PH+VPLS  AL++L+ +++L  
Sbjct  244  LLILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRR  301

Query  293  ERELVFPSPYY----PGKPLSENTLNSALARMGYKGLATAHGFRALFSTVANESGH-SPD  347
            +      SPY+       PLS+ TL+ A+ R+GY G A +HGFRA  ST  NESG  +PD
Sbjct  302  N-----NSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPD  356

Query  348  VIERQLAHVERNAVRAAYHRSTYLKDRAQLMQWWADYL  385
             IERQLAH + NAVRAAY+R+ YL +R ++MQWWADY+
Sbjct  357  AIERQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

60) Msip34_1673 in NC_012969


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  220 bits (820),  Expect = 9e-59, Method: Compositional matrix adjust.
 Identities = 161/399 (41%), Positives = 255/399 (64%), Gaps = 20/399 (5%)

Query  5    LTDLACRKATCEGKTLSKLSDGGGLYLWVYANGAKYWRFRYFIHVEGGKKKEMSLSLGVY  64
            LTD   + A   ++   +L+DG+GL L +   G+ +W FRY+I+      +E ++SLG Y
Sbjct  12   LTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYING-----RERNMSLGRY  66

Query  65   PEVSLNDARVEARKYQGLVDNGIDPatakkakllqtkaEAG---DTFAEIAREWYRKMMP  121
            P +S++ AR EA   +  + +G+DP + +K K     AE     +TF  +AREWY+   P
Sbjct  67   PAMSIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRP  126

Query  122  TW-TETHARDIERRIEINLIPFIPQKPIAELEAVDFLKPLEKVQERGATHLSHRLLINIR  180
             W  E HA+++   +E  ++PFI +KPI+ + + ++LK +EK+ +R  T  + R+   IR
Sbjct  127  EWKNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPET--ASRVKQRIR  184

Query  181  QVYKYAIAKGKCKYDVTPGLGNALIPHVAKNQPAIRPEELPKLMTDIADYHKLGEMKVQL  240
             V+ YAI  ++   + + +L + + + +AK QP++ + EL  +  ++  Y   G+ K  L
Sbjct  185  AVFDYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY---GNPKTAL  240

Query  241  GLQLMAHVWLRTRELTFGRWDELDYEANLWRVPGERMKMDRDHLIPLTPQVKVILERLRV  300
            +L+L+     R+ EL FG+W+EL  ++N W++P+ERMKM+R H++PL+     IL+ LR 
Sbjct  241  ALRLLILTMTRSGELRFGQWQEL--QGNEWHIPAERMKMNRPHIVPLSDWALEILDELRS  298

Query  301  LAR-GSEYILPGRNHLTPVSNNTLLYALYRLGYKSRMTGHGFRSVASTILNESGF-NADA  358
            L R  S Y++ G  + TP+S+ TL  A+ RLGY +R   HGFR+ AST +NESG+ N+DA
Sbjct  299  LRRNNSPYFVTGNRN-TPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDA  357

Query  359  IERQLAHVPENAVRAAYNRAEYIDERRKMMLWWSEYLDK  397
            IERQLAH  ENAVRAAYNRAEY++ER++MM WW++Y+ K
Sbjct  358  IERQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIRK  396

61) YPC_4545 in NC_017265


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  219 bits (817),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 158/393 (41%), Positives = 248/393 (64%), Gaps = 15/393 (3%)

Query  1    MPLSDRQIRRAKPQEKAY-TLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLV  59
            M L+D+ I+ AK   ++Y  L+DG+GL+L I   GS  W FRY + G+ R MSLG Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARSKRDVARKQVADGTDPAEVKKAEK---LAQRLSSENSFEAISREWHKAKADRWS  116
            S+  AR+     R ++ +G DP   +K  +   LA+  +  ++FE ++REW + K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LG-YREEIMSTFEADIFPYIGKRPIAEITQLELLDVLQRIEKRGALEKTRKVRQRCGEVF  175
                 +++++T+E  +FP+IGK+PI+ I+  ELL V++++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKIL  235
             YAI T+R   NPA  L+  + +   ++ P L+A E+  F+++L+ Y G+  T  A ++L
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPI-TGH  294
            +LT  R+ E+RF+ WQE  L+G  W+IPAERMKM RPHIVPLS   + ++ +L ++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQG-YDSAWIELQ  353
             PY+  G  +R+ P+S  T++  +  LGY GRA  HGFR T ST ++E G  ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLEKRREMLQWYADLI  386
            LAH D N++R++YN+A+YLE R+ M+QW AD I
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

62) YE105_C3845 in NC_015224


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  218 bits (810),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 157/391 (41%), Positives = 246/391 (63%), Gaps = 15/391 (3%)

Query  1    MPLSDIQIRRAKPQEKAY-TLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLI  59
            M L+D  I+ AK   ++Y  L+DG+GL+L I   GS  W FRY + G+ R MSLG Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARSKRDMARKQVADGTDPAEVKKADK---LAQRLSSENSFEAISREWHKAKADRWS  116
            S+  AR+     R ++ +G DP   +K  +   LA+  +  ++FE ++REW + K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LG-YREEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVF  175
                 +++++T+E  +FP+IGK+PI+ I+P ELL V++++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKIL  235
             YAI T+R   NPA  L+  + +   ++ P L+A E+  F+++L+ Y G+  T  A ++L
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTKEMRFATWQEIDLENGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPI-TGH  294
            +LT  R+ E+RF+ WQE  L+   W+IPAERMKM RPHIVPLS   + ++ +L ++   +
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGRNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQG-YDSAWIELQ  353
             PY+  G  +R+ P+S  T++  +  LGY GRA  HGFR T ST ++E G  ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNSIRGTYNHAQYLEKRRDMLQWYAD  384
            LAH D N++R++YN+A+YLE R+ M+QW AD
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWAD  392

63) Dd586_3778 in NC_013592


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  216 bits (804),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 160/397 (41%), Positives = 251/397 (64%), Gaps = 19/397 (4%)

Query  1    MPLTDAKIRSTKPANKP-IKLADGGGLYLDVRPSGSKLWRYRYRIAGKENVFALGEYPTL  59
            M LTD  I+++K +++  ++L+DG+GL L +   GS +W +RY I G+E   +LG YP++
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARAEHDKARALVKQAIHPAHQRQLERMASY----SANANTFEAVAREWIDKKSPDW  115
            S+  AR+E    R  ++Q+++P  +R+  + A+Y     ++ +TFE VAREW + K P+W
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERK-KKQAAYLAEEKTQKETFEFVAREWYQLKRPEW  128

Query  116  -TPYYLRQVERFLAADVFPAIGKLPIKSVKAAHLLEIIKRIEGRGAETVALLIRQWSSAI  174
                  +QV   L   VFP IGK PI  + +++LL ++ ++ +R   +    ++Q+  A+
Sbjct  129  KNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPETASR--VKQRIRAV  186

Query  175  FRYAVATLRADSDPAAALKGAIRRPKVEHHKPLSRTEIEDFMQALNRYGGYRTTVIALKL  234
            F YA+ T R   +PA AL   I R+ +  + +L+  E+  F + L+ YG    T +AL+L
Sbjct  187  FDYAIQTDRLSRNPAIAL-PKIFRSTIAKQPSLPARELGIFFKQLDTYGN-PKTALALRL  244

Query  235  MLLTFVRTVELRKAEWREFDLDGAEWRIPAGRMKMREEHIVPLSTQAIVLLRELQTYTGG  294
            ++LT  R+ ELR ++W+E  L+G EW+IPA RMKM   HIVPLS  A+ +L EL++    
Sbjct  245  LILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRN  302

Query  295  RGWLFPNYRNPQDCMTATTLNRALERMGFNGKDSIGFSAHGFRATASTILNEMGYR-PDV  353
             +  F    N +  ++ TTL+ A+ R+G+ G+      +HGFRATAST +NE G + PD 
Sbjct  303  NSPYFVT-GNRNTPLSDTTLSLAMKRLGYAGRA----VPHGFRATASTAMNESGLWNPDA  357

Query  354  IERQLAHTERNKVRASYNRAVYLDERRKMMQAWADFV  390
            IERQLAHT+ N VRA+YNRA YL+ER++MMQ WAD++
Sbjct  358  IERQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

64) A79E_0092 in NC_018522


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  216 bits (804),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 160/394 (41%), Positives = 242/394 (62%), Gaps = 21/394 (5%)

Query  1    MALTDIQIKRAKPQEKPY-TLNDGQGLSLLINPDGSKGWRFRFRLAGKARLMSFGSYDLV  59
            M LTD  I+ AK   + Y  L DG+GL+L I   GS  W FR+ + G+ R MS+G Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEAREKRETSRKQVANGIDPVEERKSQK---LAQKLSTENSFEAICREWHTNKADRWT  116
            S+  AR      R ++ +G+DP+ ERK ++   LA+  +  ++FE + REW   K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  VA-YREEIIKTFEKDVFPFIGKRPNSEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVY  175
                 +++I T+E+ VFPFIGK+P S I P ELL V+ ++  R   E + +V+QR   V+
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKII  235
             YAI T+R   NPA  L+  +     K +P L+A EL  F+++L++Y G+  T  A +++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTQEMRFATGDEIDLEKAIWEIPAERMKMRRPHIVPLSTQVIDLFRQLKPI-TGH  294
            +LT  R+ E+RF  G+  +L+   W+IPAERMKM RPHIVPLS   ++++ +L+++   +
Sbjct  246  ILTMTRSGELRF--GQWQELQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGRKNRSKPISKESVSQVIELLGYKGRATGHGFRHTMSTILHEQGFDSAW----I  350
             PY+  G  NR+ P+S  ++S  +  LGY GRA  HGFR T ST ++E G+   W    I
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGL---WNPDAI  358

Query  351  EMQLAHVDKNKIRGIYNHAQYIEDRTKMMQWYSD  384
            E QLAH D N +R+ YN+A+Y+E+R +MMQW +D
Sbjct  359  ERQLAHTDENAVRAAYNRAEYLEERHRMMQWWAD  392

65) KP1_5380 in NC_012731


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  216 bits (804),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 160/394 (41%), Positives = 242/394 (62%), Gaps = 21/394 (5%)

Query  1    MALTDIQIKRAKPQEKPY-TLNDGQGLSLLINPDGSKGWRFRFRLAGKARLMSFGSYDLV  59
            M LTD  I+ AK   + Y  L DG+GL+L I   GS  W FR+ + G+ R MS+G Y  +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEAREKRETSRKQVANGIDPVEERKSQK---LAQKLSTENSFEAICREWHTNKADRWT  116
            S+  AR      R ++ +G+DP+ ERK ++   LA+  +  ++FE + REW   K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  VA-YREEIIKTFEKDVFPFIGKRPNSEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVY  175
                 +++I T+E+ VFPFIGK+P S I P ELL V+ ++  R   E + +V+QR   V+
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKII  235
             YAI T+R   NPA  L+  +     K +P L+A EL  F+++L++Y G+  T  A +++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTQEMRFATGDEIDLEKAIWEIPAERMKMRRPHIVPLSTQVIDLFRQLKPI-TGH  294
            +LT  R+ E+RF  G+  +L+   W+IPAERMKM RPHIVPLS   ++++ +L+++   +
Sbjct  246  ILTMTRSGELRF--GQWQELQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGRKNRSKPISKESVSQVIELLGYKGRATGHGFRHTMSTILHEQGFDSAW----I  350
             PY+  G  NR+ P+S  ++S  +  LGY GRA  HGFR T ST ++E G+   W    I
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGL---WNPDAI  358

Query  351  EMQLAHVDKNKIRGIYNHAQYIEDRTKMMQWYSD  384
            E QLAH D N +R+ YN+A+Y+E+R +MMQW +D
Sbjct  359  ERQLAHTDENAVRAAYNRAEYLEERHRMMQWWAD  392

66) EbC_44590 in NC_014306


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  215 bits (802),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 158/391 (41%), Positives = 241/391 (62%), Gaps = 15/391 (3%)

Query  1    MPLTDIQIRRAKPLDKPY-TMNDGQGLALLINPDGSKGWRFRYRYAGKARLMSFGSYSLV  59
            M LTD  I+ AK   + Y  + DG+GL+L I   GS  W FRY   G+ R MS+G Y+ +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEAREKRDTARKQVANGIDPVEERKAQK---LAQQLSSENSFEAISKEWHANKADRWT  116
            S+  AR      R ++ +G+DP+ ERK ++   LA++ +  ++FE +++EW   K   W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  LA-YREEILKTFEQDVYPFIGRRPISEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVF  175
                 ++++ T+EQ V+PFIG++PIS I P ELL V+ ++  R   E + +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAIITGRAEYNPAPDLASALAVPKQKHHPFLSAEELPHFISDLEAYTGSIITKNATKIV  235
             YAI T+R   NPA  L+  +     K +P L+A EL  F+ +L++Y G+  T  A +++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTQEMRFASWCEVDLVKGVWEIPAERMKMRRPHIVPLSTQVIDLFKQLK-LITGH  294
            +LT  R+ E+RF+ W   +L    W+IPAERMKM RPHIVPLS   ++++ +L+ L   +
Sbjct  246  ILTMTRSGELRFGQW--QELQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  295  YPYIFIGRNNRSKPISKETVSQVIELLGYKGRATGHGFRHTMSTILHEQGF-DSAWIEMQ  353
             PY+  G  NR+ P+S  T+S  +  LGY GRA  HGFR T ST ++E G+ ++  IE Q
Sbjct  304  SPYFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQ  361

Query  354  LAHVDKNNIRGTYNHALYIKQRKSMLQWYSD  384
            LAH D N +R++YN+A Y+ +R  M+QW +D
Sbjct  362  LAHTDENAVRAAYNRAEYLEERHRMMQWWAD  392

67) YE105_C2844 in NC_015224


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  214 bits (798),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 157/390 (41%), Positives = 240/390 (62%), Gaps = 13/390 (3%)

Query  1    MLLNDFKIRSAKPTDKAY-TLNDGKGLSLIISPNGVKGWRFRYQFGGKAHMISFGVYGPV  59
            M L D  I++AK   ++Y  L DG GL+L I+  G   W FRY + G+ + +S+G Y ++
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLADARRQREEAKSALANGTNPSDARKAEK---IALKYPAKNTFEDIAREWHTSKLATWT  116
            S+  AR +  E +  L +G +P   RK  +   +A     K+TFE +AREW   K + W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  PE-YADTVIRGFDNNVFPYIGKRPIDQIAPLELLAVLQRIEKRGALELTGKIRRRCGEVF  175
             E  A+ VI  +++ VFP+IGK+PI +I+P ELL V++++  R   E ++++++R   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAVVTGRATYNPAPDLASALNRPKNGHYPFLTESELPEFIQALDNYKGSKQTKYATQLL  235
             YA+ T+R + NPA  L+  + R+  +  P L   EL  F++ LD Y G+ +T  A +LL
Sbjct  188  DYAIQTDRLSRNPAIALPKIF-RSTIAKQPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  MLTGVRTIELRAAEWSEFDLDNALWEVPKERMKKRRPHLVPLSKQALAILEKLKVLTGNY  295
            +LT  R+ ELR ++W E  L+   W++P ERMK  RPH+VPLS  AL IL+ L+ L  N 
Sbjct  246  ILTMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  296  KLVFPGRNDAGKPMSEASINKVIKMLGYHGRATGHGFRHTMSTILHEKG-YNSAWIETQL  354
               F    +   P+S+++++  +K LGY GRA  HGFR T ST ++E G  N+  IE QL
Sbjct  304  SPYFVT-GNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQL  362

Query  355  AHVDKNSIRGTYNHAQYLEGRREMLQWYGD  384
            AH D N++R++YN+A+YLE R+ M+QW +D
Sbjct  363  AHTDENAVRAAYNRAEYLEERHRMMQWWAD  392

68) intS in NC_016514


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  214 bits (795),  Expect = 9e-57, Method: Compositional matrix adjust.
 Identities = 160/392 (41%), Positives = 243/392 (62%), Gaps = 11/392 (2%)

Query  24   MMLNARKVEAAKGKEKSY-KLSDGGGLYLQVEPNGSRYWRMKYRFAGKEKRLSFGVYPTV  82
            M L  + +++AK   ++Y +L+DG+GL L++   GS +W  +Y + G+E+ +S+G YP++
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  83   TLADARQKREDAKKLLAAGEDPGEVKKAKKQA-LNAAIETLNPFRDVALEWHKMKSPKW-  140
            ++  AR    + +  L  G DP   +K K+ A L       + F  VA EW ++K P W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  141  SEGYASDIIEAFEKDIFPHIGHRPIADIQPLELLGVLRLIEARGAMEKAKKVRQRCGEVF  200
            +E  A ++I ++E+ +FP IG +PI+ I P ELL V+  +  R   E A +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  201  RYAIVTGRAIYNPAPDLASAMQGHEAVHYPFLKAKELPEFFTALNAYSGSPIVllgaqll  260
             YAI T+R   NPA  L+   ++  A + P L A+EL  FF  L++Y G+P   L+ +LL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  261  iltglRTGELRAGEWSEVDFNNAVWEIPKERMKMRRSHIVPLPKQALSHLKSLKDLTGNY  320
            ILT  R+GELR G+W E++     W+IP ERMKM R+HIVPL+  AL  L  L+ L  N 
Sbjct  246  ILTMTRSGELRFGQWQELQ--GNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  321  PLMFPGRNDPSKPMSEASINQVFKRIGYAGRVTGHGFRHTMSTILHEKGF-NSAWIETQL  379
            +  F    + + P+S+++++   KR+GYAGR   HGFR T ST ++E G+ N+  IE QL
Sbjct  304  SPYFVT-GNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQL  362

Query  380  AHLDKNSIRGIYNHAQYLEGRREMMQWYANYL  411
            AH D N++R+ YN+A+YLE R+ MMQW A+Y+
Sbjct  363  AHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

69) UWK_00659 in NC_020304


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  211 bits (785),  Expect = 5e-56, Method: Compositional matrix adjust.
 Identities = 160/387 (42%), Positives = 249/387 (65%), Gaps = 15/387 (3%)

Query  13   KPEKLPFKISDGHGLWFHIAKSGGKTWRYRFKILGRESTFVLGEYPKMSLKearearaea  72
            KP +  ++++DG+GL + I+  G+  W +R+ I GRE    LG YP MS+  AR    E 
Sbjct  22   KPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAMSIEAARGEALEL  81

Query  73   reLVKLGKNPAKERKKAKQETVDRELELKAVDENCFRAVALEWIDNQKGKWKSE-HANAV  131
            R  ++ G +P  ERKK +   +  E      + + F  VA EW + ++  WK+E HA+ V
Sbjct  82   RYHLRQGLDPLAERKKKQAAYLAEE----KTQKETFEFVAREWYQLKRPEWKNEKHAQQV  137

Query  132  RATLEHDAFPVVGDFPVDSIQPPTVLKILRSIEKRGSLEIARKVLQRMSAVFRYAIQTGR  191
             +TLE+  FP +G  P+  I PP +LK++  +  R   E A +V QR+ AVF YAIQT+R
Sbjct  138  ITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVFDYAIQTDR  195

Query  192  ATYNPAADMKGVIKTRKVIHQAALSIDEMPEFLKKMQTADIHINTKLALQFTILTAARSG  251
             + NPA  +  ++++  +  Q++L+  E+  F+K+++T + + +T LAL++ ILT +RSG
Sbjct  196  LSRNPAIALPKIFRS-TIAKQPSLPARELGIFFKQLDTYG-NPKTALALRLLILTMTRSG  253

Query  252  ETRFARWDEIDIEERMWRIPAERMKVNSPHNVPLSNQARAILERVGNLY-GRDGYIFPGI  310
            E RF++W+E++ +E  W+IPAERMK+N PH VPLS+ A  IL+ + +L      Y+  G 
Sbjct  254  ELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNNSPYFVTGN  311

Query  311  RDSNKPLSENTMLYAMYRMGYHSRSTVHGFRAVFSTIANESGF-DGDVIEKALAHEQRNK  369
            R++  PLS+ T+  AM R+GY +R+  HGFRA  ST  NESG+ + D IE+ LAH + N 
Sbjct  312  RNT--PLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQLAHTDENA  369

Query  370  VRAAYHRSHYIEQRRDLMQWWADLLQK  396
            VRAAY+R++Y+E+R+ +MQWWAD ++K
Sbjct  370  VRAAYNRAEYLEERHRMMQWWADYIRK  396

70) RSc0968 in NC_003295


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  210 bits (781),  Expect = 1e-55, Method: Compositional matrix adjust.
 Identities = 157/392 (41%), Positives = 245/392 (63%), Gaps = 14/392 (3%)

Query  1    MPLTDLSARNAKPQDKPY-RLADGLGMYLEVMPNGSKYWRLKYRIAGKEKRLALGVYPSV  59
            M LTD   + AK   + Y RL+DG G+ L +   GS +W ++Y I G+E+ ++LG YP++
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   GlaqartarddarrliaaGTDPSQARKEAK---LATTTARTHTFEVVAREWHEKQSATW-  115
            ++  AR    + R  +  G DP   RK  +   LA   ++ +TFE VAREW + + + W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  VPTYATKVLHSLETDIFPDLGARPITEITAPQMLATLRKVESRDALETVARLQQRCSAVF  175
                A +V+ +LE  +FP +G +PI+ I++P++L  + K+  R   ET +R++QR  AVF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  RYAVVTGRAAHNPCTDLKGAFKTAKVQHMARVQANEVPTLIKNIRGYDGDLITRIALQFM  235
             YA+ T+R ++NP   L   F+++ +   + + A E+  ++K++  Y G+  T +AL+++
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRST-IAKQPSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  ALTFVRTKELIGAQWSEIDFETEEWRIPAERMKMREPHFVPLS-WQAIALLRAAEKMTGN  294
             LT  R+ EL  +QW E+  + +EW+IPAERMKM  PH+VPLS W A+ +L     +  N
Sbjct  246  ILTMTRSGELRFGQWQEL--QGNEWHIPAERMKMNRPHIVPLSDW-ALEILDELRSLRRN  302

Query  295  RQYVFQSPKGRTHISNNTILYALYRLGYHSRMTGHGFRGLASTMLHEQGF-NPDVIERQL  353
                F + +  T +S+ T+  A+ RLGY +R   HGFR+ AST ++E G+ NPD IERQL
Sbjct  303  NSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQL  362

Query  354  AHAERNKVRAAYNHAQYLPERRRMMQHWADHL  385
            AH++ N VRAAYN+A+YL ER+RMMQ WAD +
Sbjct  363  AHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

71) Bcep1808_2451 in NC_009256


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  209 bits (777),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 161/394 (41%), Positives = 250/394 (64%), Gaps = 15/394 (3%)

Query  1    MALTDLKVRTAKPADKQ-QKLYDGAGLLLLITPAGGKRWIFKYRIDGKEKSLALGTYPDV  59
            M LTD  ++TAK + +   +L DG GL L IT  G+  W F+Y I+G+E++++LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLaeararrdsareKLAAGVDP---SEakkadkraaqlaaaSSFEIVAREWFETQRGGW-  115
            S+  AR+     R  L  G+DP      K+A   A + +   +FE+VAREW++ +R  W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SEVYAGKVINCLEVDVFPRLGARPIANIDAPELLAIIRAVESRGVRETAKRVLQRSRAVF  175
            +E  A +VI  LE  VFP +G +PI+ I +PELL ++  +  R   ETA RV QR RAVF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  QYGIMTGRCSRNPAADIDAETVLKKSTGVQHMARVKVTEIPQLMRDIDEYSGDLVTRLAL  235
            +Y+I T+R SRNPA  I    +++ + + Q  + +   E+  + +++D Y G+  T LAL
Sbjct  188  DYAIQTDRLSRNPA--IALPKIFRSTIAKQ--PSLPARELGIFFKQLDTY-GNPKTALAL  242

Query  236  RFMALTFVRTKEMIQAEWHEIDVGAAEWRVPAERMKMRDPHIVPLSRQALDVLAQLREIN  295
            R++ LT  R+ E+  ++W+E++  + EW++PAERMKM  PHIVPLS  AL++L +LR + 
Sbjct  243  RLLILTMTRSGELRFGQWQELQ--GNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLR  300

Query  296  GQRRFVFYSVQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATTLRELG-YSRDVVER  354
             +    F + +  + +S+ T+  A+ R+GY +R   HGFR+ A+T++ E G  + D +ER
Sbjct  301  RNNSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIER  360

Query  355  QMAHAERNQVTAAYVHAEYLPERRKMMQHWADHL  388
            Q+AH++ N V AAY +AEYL ER++MMQ WAD +
Sbjct  361  QLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

72) BTH_I0928 in NC_007651


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  207 bits (771),  Expect = 7e-55, Method: Compositional matrix adjust.
 Identities = 157/392 (41%), Positives = 246/392 (63%), Gaps = 15/392 (3%)

Query  48   LTDLKVRRAKPAEQPY-RLADGKGLYLQVMPNGSRYWRMKYRFDGKEKLASFGVYPEVSl  106
            LTD  ++ AK + + Y RL+DG GL L++   GS +W  +Y ++G+E+  S+G YP +S+
Sbjct  12   LTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAMSI  71

Query  107  aqarqaclaarkllaaGTDPTEQKREIKRARAIEASS---SFEAVAREWFESQKDGW-TE  162
              AR   L  R  L  G DP  +++  + A   E  +   +FE VAREW++ ++  W  E
Sbjct  72   EAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWKNE  131

Query  163  VYANKVINSLEVDAFPRIGSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRAVFQY  222
              A++VI +LE   FP IG KP+  I +P++L ++  +  R   ETA RV QR RAVF+Y
Sbjct  132  KHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVFDY  189

Query  223  GIMTGRCSRNPAADIDAETVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQLALRF  282
            +I T+R SRNPA  I    +++    +   + + + E+  + +++ +Y G+  T LALR+
Sbjct  190  AIQTDRLSRNPA--IALPKIFRST--IAKQPSLPARELGIFFKQLDTY-GNPKTALALRL  244

Query  283  MALTFTRTTEMINAEWDEFDERAAEWRIPPDRMKMRDPHIVPLSRQALEVLAALRELNGN  342
            + LT TR+ E+  ++W+E++  + EW+IP++RMKM  PHIVPLS  ALE+L  LR L  N
Sbjct  245  LILTMTRSGELRFGQWQELQ--GNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRN  302

Query  343  QRLVFYSVQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATVLRELGY-SRDVVDRQL  401
            +   F + +  + +S+ T+  A+ R+GY +R   HGFR+ A+T + E G  + D ++RQL
Sbjct  303  NSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQL  362

Query  402  AHAERNQVTAAYVHAEYLPERRKMMQHWADYL  433
            AH++ N V AAY +AEYL ER++MMQ WADY+
Sbjct  363  AHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

73) SBG_2173 in NC_015761


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  205 bits (764),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 242/393 (62%), Gaps = 15/393 (3%)

Query  1    MALTNVQIKNAAPGETDY-TLSDGSGLFIIIKPQGSKLWRFRYRREGKLRRLSLGAYPEI  59
            M LT+  I+ A     +Y  L+DG GL + I  +GS +W FRY  +G+ R +SLG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLSQARIKAAEARAKLAQGISPVDERREQK-----EASKVINSFEGVCLEWQATRKATW-  113
            S+  AR  A E R  L QG+ P+ ER+ ++     E     ++FE V  EW   +++ W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  114  SESYADDTKRLFERNVFPVLGARPIGDIQPLELLDLLRKIEDRGANELATKVRRRCGEVY  173
            +E  A++    +E+ VFP +G +PI+ I P ELL ++ K+ DR   E A++V++R   V+
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  174  AYAIVTGRAKYNPARDLATAMQRFQRGHYASLDTADLPAFLTALEATTGNIMVNLAVRLL  233
             YAI T+R   NPA  L+    R   +  +SL + +L  F+  L+ T GN    LA+RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIF-RSTIAKQPSLPARELGIFFKQLD-TYGNPKTALALRLL  245

Query  234  MLTGLRPGELRKGEWKEIDIDNALWEIPAERMKARRPHLVPLSKQAIELLRSVKAISGNY  293
            +LT  R+GELR G+W+E++ ++  W+IPAERMK  RPH+VPLS  A+E+L  ++++  N 
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  294  SLMFPGRNDVTRPMSDMAMNQLIKRCGYGEKLTGHGFRHMMSTILHEKGF-NSAWIELQL  352
            S  F    +   P+SD +++  +KR GY+ +   HGFR   ST ++E G+ N+  IE QL
Sbjct  304  SPYFVT-GNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQL  362

Query  353  AHVDKNTIRGTYNRAQYLEGRREMMQWYADHLQ  385
            AH D N++R++YNRA+YLE R+ MMQW AD ++
Sbjct  363  AHTDENAVRAAYNRAEYLEERHRMMQWWADYIR  395

74) SeSA_A0374 in NC_011094


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  203 bits (755),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 158/392 (41%), Positives = 248/392 (64%), Gaps = 11/392 (2%)

Query  1    MMLNARKVEAAKGKEKSY-KLADGGGLYLQVEPNGSRYWRMKYRFAGKEKRLSFGVYPAV  59
            M L  + +++AK   ++Y +L+DG+GL L++   GS +W  +Y + G+E+ +S+G YPA+
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLADARQKREDAKKLLAAGNDP-GEVkkakklalTSATEIVNPFKEVALEWHKMKSPKWS  118
            S+  AR    + +  L  G DP +E KK +   L+      + F  VA EW ++K P W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  119  KG-YASDILEAFEKDIFPHIGQRPIADIKPLELLEVLRLIEARGAMEKAKKVRQRCGEVF  177
            +   A +++ ++E+ +FP IG++PI+ I P ELL V+  +  R   E A +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  178  RYAIVTGRAIYNPAPDLASAMQGHEAVHYPFLKATELPEFFTALNAYTGSPIVVLGAHLL  237
             YAI T+R   NPA  L+   ++  A + P L A EL  FF  L++Y G+P   L+ +LL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  238  ILTGLRTGELRAAEWCEIDFDNALWEIPKERMKMRRAHLVPLSNQalalletlkeltGNY  297
            ILT  R+GELR ++W E++ ++  W+IP ERMKM R+H+VPLS+ AL +L+ L+ L  N 
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  298  PLMFPGRNDPSKSMSEASINQVFKRIGYAGRVTGHGFRHTMSTILHEKGF-NSAWIETQL  356
            +  F    + + ++S+++++   KR+GYAGR   HGFR T ST ++E G+ N+  IE QL
Sbjct  304  SPYFVT-GNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQL  362

Query  357  AHLDKNSIRGIYNHAQYLEGRREMMQWYANYL  388
            AH D N++R+ YN+A+YLE R+ MMQW A+Y+
Sbjct  363  AHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

75) Bamb_2400 in NC_008390


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  203 bits (753),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 159/392 (41%), Positives = 251/392 (65%), Gaps = 15/392 (3%)

Query  1    MALTDLKVRTAKPAEKQ-QKLYDGGGLLLLITPAGGKRWVLKYRVDSKEKSLALGTYPDV  59
            M LTD  ++TAK + +   +L DG+GL L IT  G+  W ++Y ++++E++++LG YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLaeararrdnareKLAAGVDP---SEakkadkraaqlaaaSSFEIVAREWFDTQRGGW-  115
            S+  AR+   + R  L  G+DP      K+A   A + +   +FE+VAREW++ +R  W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  116  SEVYAGKVISCLEVDVFPRLGARPIASIDAPELLAIIRTVESRGVRETAKRVLQRSRAVF  175
            +E  A +VI+ LE  VFP +G +PI+ I +PELL ++  +  R   ETA RV QR RAVF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  176  QYGIMTGRCARNPAADIDAETVLKKSTGVQHMARVKATEIPRLMRDIDEYSGDLVTRLAL  235
            +Y+I T+R +RNPA  I    +++ + + Q  + + A E+  + +++D Y G+  T LAL
Sbjct  188  DYAIQTDRLSRNPA--IALPKIFRSTIAKQ--PSLPARELGIFFKQLDTY-GNPKTALAL  242

Query  236  RFMALTFVRTKEMIQAEWPEIDVDAAEWRVPAERMKMRDPHIVPLSRQALGVLAQLREIN  295
            R++ LT  R+ E+  ++W E++  + EW++PAERMKM  PHIVPLS  AL +L +LR + 
Sbjct  243  RLLILTMTRSGELRFGQWQELQ--GNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLR  300

Query  296  GQQRFVFYSVQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATALRELG-YSRDVVER  354
             ++   F + +  + +S+ T+  A+ R+GY +R   HGFR+ A+TA+ E G  + D +ER
Sbjct  301  RNNSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIER  360

Query  355  QMAHAERNQVTAAYVHAEYLPERREMMQHWAD  386
            Q+AH++ N V AAY +AEYL ER+ MMQ WAD
Sbjct  361  QLAHTDENAVRAAYNRAEYLEERHRMMQWWAD  392

76) Veis_3652 in NC_008786


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  203 bits (756),  Expect = 9e-54, Method: Compositional matrix adjust.
 Identities = 159/387 (42%), Positives = 232/387 (60%), Gaps = 30/387 (7%)

Query  1    MTLTVRAVEAAKPRHKGY-KLADSVGLYLFVTPAGGKSWRANYLREGKQATRTYGRWPDV  59
            M LT + +++AK   +GY +L+D+ GL L +T  G+  W   Y  +G++   + GR P +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLaearkahaaaR----DGVVP--------------ATVAVPSFETIARAWLKLKLPTLS  101
            S+  AR      R    +G+ P                    +FE +AR W +LK P   
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  102  NGKHQSQVANTLERFVFPKIGKRPIDTIHRPELVDVVQAVQLDGRVETAHRVAGRIAAVF  161
            N KH  QV  TLE+FVFP IGK+PI  I  PEL+ V++  +L +R ETA RV  RI AVF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVME--KLYDRPETASRVKQRIRAVF  187

Query  162  DYAQDAGLIESHPASHLVRVLHSRKVKKPMASIAPAEAGALMRAITDYDEPVTGLGLQLL  221
            DYA +++ +  +PA  L ++++S   K+P  S+++ E G + + +  Y++P T+L+L+LL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQP--SLPARELGIFFKQLDTYGNPKTALALRLL  245

Query  222  AHTFVRVGELRAMRWSEFKEDGAVWVIPAERMKLRLPHVVPLSLQAQAIVGQLRLLNAER  281
              T  R GELR  +W E+  +G  W IPAERMK+  PH+VPLS  A  I+++LR L  + 
Sbjct  246  ILTMTRSGELRFGQWQEL--QGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  282  E--FVMDSPLRPGHPLSENTFLFALYRLGYRGRMTAHGFRALASTVLNEQSGFAHDVIER  339
               FV ++      PLS+ T+ +A+ RLGY GR  +HGFRA AST +NE +    D IER
Sbjct  304  SPYFVTGNR---NTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIER  360

Query  340  QLAHKETDAVRAAYNRAQYLPQRRELM  366
            QLAH + +AVRAAYNRA+YL +R+ +M
Sbjct  361  QLAHTDENAVRAAYNRAEYLEERHRMM  387

77) CSSP291_04405 in NC_020260


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  202 bits (751),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 163/398 (41%), Positives = 250/398 (63%), Gaps = 25/398 (6%)

Query  1    MPLNARQVETAKPRDKAY-KLADGGGLYLMVNTNGSKYWRMKYRFAGKEKKLSFGTYPDI  59
            M L  + ++TAK   ++Y +L+DG+GL L +   GS +W  +Y + G+E+++S+G YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARTKRDEARKTLANDKDPGEVKK---AELLAQKLSVTNTFEAIAVEWYNAKVSGWS  116
            S+  AR    E R  L ++ DP   +K   A  LA+  +  +TFE +A EWY+ K + W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  KN-YADYVNRAFKNNVFPFVGSQPVNEIKPLELLSVLQRMEKRGAPELASKVRQRCSEVF  175
            ++  A+ V  ++ + VFPF+G +P++ I P ELL V++++  R  PE AS+V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDR--PETASRVKQRIRAVF  187

Query  176  RYAIVTGRAEYNPAADLGSALQGYEKQHYPFLTAAELPEFLQKLSQYTGSlvtllatrll  235
             YAI T+R   NPA  L   +++   ++ P L A EL  F+++L  Y G+  T LA RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  mltglrtvELRMAEWSEIDFENHIWEIPKSRMKMRRPHIVPlsa---qslaalrqlkqlT  292
            +LT  R+ ELR ++W E+  + + W+IP  RMKM RPHIVPLS    + L  LR L++  
Sbjct  246  ILTMTRSGELRFGQWQEL--QGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GTYQFIFAGRNDVNKPMSEASINMVIKRIGYDKRATGHGFRHTMSTILHEEGFNTAW---  349
            + Y F+ + RN    P+S++++++ +KR+GY  RA  HGFR T ST ++E G+   W   
Sbjct  304  SPY-FVTGNRNT---PLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGL---WNPD  356

Query  350  -IETQLAHVDKNAIRGTYNHAQYLEGRKEMMQWYGDYL  386
             IE QLAH D NA+R++YN+A+YLE R  MMQW +DY+
Sbjct  357  AIERQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

78) ECL_03688 in NC_014121


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  202 bits (751),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 163/398 (41%), Positives = 250/398 (63%), Gaps = 25/398 (6%)

Query  1    MPLNARQVETAKPRDKAY-KLADGGGLYLMVNTNGSKYWRMKYRFAGKEKKLSFGTYPDI  59
            M L  + ++TAK   ++Y +L+DG+GL L +   GS +W  +Y + G+E+++S+G YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARTKRDEARKTLANDKDPGEVKK---AELLAQKLSVTNTFEAIAVEWYNAKVSGWS  116
            S+  AR    E R  L ++ DP   +K   A  LA+  +  +TFE +A EWY+ K + W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  KN-YADYVNRAFKNNVFPFVGSQPVNEIKPLELLSVLQRMEKRGAPELASKVRQRCSEVF  175
            ++  A+ V  ++ + VFPF+G +P++ I P ELL V++++  R  PE AS+V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDR--PETASRVKQRIRAVF  187

Query  176  RYAIVTGRAEYNPAADLGSALQGYEKQHYPFLTAAELPEFLQKLSQYTGSlvtllatrll  235
             YAI T+R   NPA  L   +++   ++ P L A EL  F+++L  Y G+  T LA RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  mltglrtvELRMAEWSEIDFENHIWEIPKSRMKMRRPHIVPlsa---qslaalrqlkqlT  292
            +LT  R+ ELR ++W E+  + + W+IP  RMKM RPHIVPLS    + L  LR L++  
Sbjct  246  ILTMTRSGELRFGQWQEL--QGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  293  GTYQFIFAGRNDVNKPMSEASINMVIKRIGYDKRATGHGFRHTMSTILHEEGFNTAW---  349
            + Y F+ + RN    P+S++++++ +KR+GY  RA  HGFR T ST ++E G+   W   
Sbjct  304  SPY-FVTGNRNT---PLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGL---WNPD  356

Query  350  -IETQLAHVDKNAIRGTYNHAQYLEGRKEMMQWYGDYL  386
             IE QLAH D NA+R++YN+A+YLE R  MMQW +DY+
Sbjct  357  AIERQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

79) ESA_03025 in NC_009778


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  197 bits (730),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 160/394 (41%), Positives = 243/394 (62%), Gaps = 15/394 (3%)

Query  1    MMLNARKVEAAKGKEKSY-KLSDGGGLYLQVEPNGSRYWRMKYRFGGKEKRLSFGVYPTV  59
            M L  + +++AK   ++Y +L+DG+GL L++   GS +W  +Y + G+E+ +S+G YP++
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLADARQKREEAKKLLATGDDP-SEVkkakklaliaaTEIVNPFRDVALEWHKMKSPKW-  117
            S+  AR    E +  L  G DP +E KK +   L       + F  VA EW ++K P W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  118  SEGYASDILEAFDKDIFPHIGHRPIADIQPLELLEVLRLIEARGAMEKAKKVRQRCGEVF  177
            +E  A +++ ++++ +FP IG +PI+ I P ELL V+  +  R   E A +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  178  RYAIVTGRAVYNPAPDLASAMQGHEAVHYPFLKASELPEFFTVLNAYTGSPIVllgahll  237
             YAI T+R   NPA  L+   ++  A + P L A EL  FF  L++Y G+P   L+ +LL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  238  iltglRTGELRAAEWREVDFDNAIWEIPKERMKMRRAHIVPLSKQALVYLKRLKELTGNY  297
            ILT  R+GELR ++W+E+  +   W+IP ERMKM R+HIVPLS  AL  L  L+ L  N 
Sbjct  246  ILTMTRSGELRFGQWQEL--QGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  298  PLMF--PGRNDPSKFMSEASINQVFKRIGYGGRVTGHGFRHTMSTILHEKGF-NSAWIET  354
            +  F    RN P   +S+++++   KR+GY+GR   HGFR T ST ++E G+ N+  IE 
Sbjct  304  SPYFVTGNRNTP---LSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIER  360

Query  355  QLAHLDKNSIRGIYNHAQYLDGRREMMQWYGDFI  388
            QLAH D N++R+ YN+A+YL+ R+ MMQW +D+I
Sbjct  361  QLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

80) EAE_24695 in NC_015663


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  197 bits (731),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 157/392 (41%), Positives = 249/392 (64%), Gaps = 13/392 (3%)

Query  1    MTLNARQVETAKPRDKAY-KLADGGGLYLMVNTNGSKYWRMKYRFAGKEKKLSFGIYPDI  59
            M L  + ++TAK   ++Y +L+DG+GL L +   GS +W  +Y + G+E+++S+G YP +
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLAEARTKRDEARKLLANDKDPGEVKK---ATLLAKKLSVTNTFEAIALEWYSAKVSGWS  116
            S+  AR    E R  L ++ DP   +K   A+ LA   +  +TFE +A EWY  K + W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  117  KS-YADYVKRAFKNNVFPYLGSQPVNEIKPLALLSVLQKMEKRGATELASKVRQRCNEVF  175
            +   A+ V  ++ + VFP++G +P++ I P  LL V++K+  R  T  AS+V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRPET--ASRVKQRIRAVF  187

Query  176  RYAIVTGRAEYNPAADLGSALQGHEKQHYPFLTAAELPDFLQKLSNYSGSlitllatrll  235
             YAI T+R   NPA  L   +++   ++ P L A EL  F+++L  Y G+  T LA RLL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  236  mltglrtVELRLAEWREIDFDNRIWEIPKTRMKMKRPHVVPlsaqslsalrqlKVLTGNY  295
            +LT  R+ ELR+++W+E++ ++  W+IP  RMKM+RPH+VPLS  +L  L +L+ L  N 
Sbjct  246  ILTMTRSGELRFGQWQELQGNE--WHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  296  KLIFAGRNDVNIAMSEASINMVIKRIGYDKRATGHGFRHTMSTILHEQGF-NSAWIETQL  354
               F    + N ++S++++++ +KR+GY  RA  HGFR T ST ++E G+ N+  IE QL
Sbjct  304  SPYFVT-GNRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQL  362

Query  355  AHVDKNSIRGTYNHAQYLEGRREMMQWYADFM  386
            AH D N++R++YN+A+YLE R+ MMQW AD++
Sbjct  363  AHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

81) ECL_01076 in NC_014121


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  196 bits (726),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 161/394 (41%), Positives = 243/394 (62%), Gaps = 15/394 (3%)

Query  1    MMLNARKVEAAKGKEKSY-KLSDGGGLYLQVEPNGSRYWRMKYRFAGKEKRLSFGVYPTV  59
            M L  + +++AK   ++Y +L+DG+GL L++   GS +W  +Y + G+E+ +S+G YP++
Sbjct  10   MRLTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAM  69

Query  60   SLADARQKREDAKKLLAAGEDP-GEVkkakkhaltaatEILNPFREVALEWHKMKSPKW-  117
            S+  AR    + +  L  G DP +E KK +   L+      + F  VA EW ++K P W 
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  118  SEGYASDIIEAFEKDIFPHIGHRPIADIKPLELLEVLRLIEARGAMEKAKKVRQRCGEVF  177
            +E  A ++I ++E+ +FP IG +PI+ I P ELL V+  +  R   E A +V+QR   VF
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  178  RYAIVTGRAIYNPAPDLASAMQGHEAVHYPFLKVNELPEFFTALNAYSGSPIVllgahll  237
             YAI T+R   NPA  L+   ++  A + P L   EL  FF  L++Y G+P   L+ +LL
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLL  245

Query  238  iltglRTGELRAAEWREVDFDNAVWEIPKERMKMRRTHIVPLSKQALVHLGRLKELTGNY  297
            ILT  R+GELR ++W+E+  +   W+IP ERMKM R HIVPLS  AL  L+ L+ L  N 
Sbjct  246  ILTMTRSGELRFGQWQEL--QGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNN  303

Query  298  PLMF--PGRNDPSKFMSEASINQVFKRIGYAGRVTGHGFRHTMSTILHEKGF-NSAWIET  354
            +  F    RN P   +S+++++   KR+GYAGR   HGFR T ST ++E G+ N+  IE 
Sbjct  304  SPYFVTGNRNTP---LSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIER  360

Query  355  QLAHLDKNSIRGIYNHAQYIEGRREMMQWYADFL  388
            QLAH D N++R+ YN+A+Y+E R+ MMQW AD++
Sbjct  361  QLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI  394

82) ST548_p3272 in NC_020181


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  193 bits (716),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 161/402 (41%), Positives = 247/402 (62%), Gaps = 21/402 (5%)

Query  8    LTDTEIKAAKPKDTDY-QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAV  66
            LTD  I++AK    +Y +L DGDGLTL I   GS +W+FRYY  +  +  + S+G YPA+
Sbjct  12   LTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYY--INGRERNMSLGRYPAM  69

Query  67   SLSDARKLRAESKVLLAKDIDP-QEHQKEQVRNSQEAKT--NTFLLVAERWWNVKKAS-V  122
            S+  AR    E +  L +++DP  E++K Q     E KT  +TF +VA  W ++K++   
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  123  TEDYADDIWRSLERDVFPAIGDISVTEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM  182
             E  A+++  +LE+ VFP IG  +++ I +  L+K ++ +  R   ET  R+ QRI  V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  183  IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRT---ASISLSTRCLF  239
             YA +T+ +   P++ + K F     K+ PS+ + +L  + + + T   +  +L+ R L 
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPKTALALRLL-  245

Query  240  MWQLLTITRPAEAAEARWDEIDFDANEWKIPAARMKMNRDHTVPLSDGALTILELMKSLS  299
               +LT+TR++E   ++W+E++  +NEW IPA RMKMNR H VPLSD AL IL+ ++SL 
Sbjct  246  ---ILTMTRSGELRFGQWQELQ--GNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLR  300

Query  300  GGREFIFPSRIKPTQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGF-PPDVIE  358
                  F +  + T P++  T++ A+KR G +G  V+HG+R+ ASTA+NE G+  PD IE
Sbjct  301  RNNSPYFVTGNRNT-PLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  359  AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVSKADRGS  400
              LAH D N VR AYNR++YLE+R+ MMQWWAD++ K  R S
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKIRVS  401

83) Fraau_2605 in NC_017033


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  192 bits (714),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 150/374 (41%), Positives = 239/374 (64%), Gaps = 18/374 (4%)

Query  23   DGGGLHLKVEATGRKYWRYDFRIAGKPDTFAVGVYPKVTLAEARLRHAEASALVSQGINP  82
            DG+GL LK+   G  +W + + I G+    ++G YP +++  AR    E    + QG++P
Sbjct  32   DGDGLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAMSIEAARGEALELRYHLRQGLDP  91

Query  83   kahkrakqaaavvanantfqa---vaDEWMAQQKP--KMAKATYDKAMWMLADLVYPWLG  137
             A+++ KQAA +  +    ++   VA EW   ++P  K  K + ++ +  L ++V+P +G
Sbjct  92   LAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWKNEKHA-QQVITTLEQFVFPFIG  150

Query  138  KRPISEIDAPELLAVLRRIEERGANETAHRTKQRCGQIFRYAIATGRAKHDPSGDLRGAL  197
            K+PIS I +PELL V+ ++ +R   ETA R KQR   +F YAI T+R  ++P+  L   +
Sbjct  151  KKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVFDYAIQTDRLSRNPAIALPKIF  208

Query  198  APPITKSRAAITDPQKVGELLRAIDGYSGSFSVICALRLAPMLFVRPGELRHAEWAEFDL  257
             + I+K  +    ++ +G +++ +D Y+ + + + ALRL  +   R+GELR ++W E  L
Sbjct  209  RSTIAKQPS--LPARELGIFFKQLDTYGNPKTAL-ALRLLILTMTRSGELRFGQWQE--L  263

Query  258  DQGLWRIPAEKMKMRDEHLVPLPDQALAILRDLLPLTGPDG-YLFPGERSASRPMSENTV  316
            +   W+IPAE+MKM   H+VPL+D AL IL +L +L   ++ Y+  G+R++  P+S+ T+
Sbjct  264  QGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNNSPYFVTGNRNT--PLSDTTL  321

Query  317  NAALRRLGYDKDTMTGHGFRAMASTRLNELG-WSPDVIERQLAHAERNKVRAAYNRAQYL  375
            + A++RLGY   ++  HGFRA AST +NE G W+PD IERQLAH++ N VRAAYNRA+YL
Sbjct  322  SLAMKRLGYAGRAVP-HGFRATASTAMNESGLWNPDAIERQLAHTDENAVRAAYNRAEYL  380

Query  376  PERQRMMQAWADYL  389
             ER+RMMQ WADY+
Sbjct  381  EERHRMMQWWADYI  394

84) CSSP291_03150 in NC_020260


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  191 bits (707),  Expect = 8e-50, Method: Compositional matrix adjust.
 Identities = 160/397 (41%), Positives = 245/397 (62%), Gaps = 21/397 (5%)

Query  8    LTDTEIKAAKPKDADY-QLYDGDGLTLLIKASGSKLWQFRYYRPLTKQRTKQSFGAYPAV  66
            LTD  I++AK    +Y +L DGDGLTL I   GS +W+FRYY  +  +  + S+G YPA+
Sbjct  12   LTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYY--INGRERNMSLGRYPAM  69

Query  67   SLSDARKLRAESRVLLAKDIDP-QEHQKEQMRNSQEAKT--NTFLLVAERWWNVKKAS-V  122
            S+  AR    E R  L +++DP  E++K Q     E KT  +TF +VA  W ++K++   
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  123  TEDYADDIWRSLERDVFPAIGDISVTEIKAHTLVKAVQPVQARGALETVRRLCQRINEVM  182
             E  A+++  +LE+ VFP IG  +++ I +  L+K ++ +  R   ET  R+ QRI  V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  183  IYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRT---ASISLSTRCLF  239
             YA +T+ +   P++ + K F     K+ PS+ + +L  + + + T   +  +L+ R L 
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPKTALALRLL-  245

Query  240  MWQLLTITRPAEAAEARWDEIDFDVNEWKIPAARMKMNRDHTVPLSNEALSILEMMKSLS  299
               +LT+TR++E   ++W+E++   NEW IPA RMKMNR H VPLS+ AL IL+ ++SL 
Sbjct  246  ---ILTMTRSGELRFGQWQELQ--GNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLR  300

Query  300  GGREFIFPSRIKPTQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGF-LPDAIE  358
                  F +  + T P++  T++ A+KR G +G  V+HG+R+ ASTA+NE G+  PDAIE
Sbjct  301  RNNSPYFVTGNRNT-PLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  359  AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVSK  395
              LAH D N VR AYNR++YLE+R+ MMQWWAD++ K
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIRK  396

85) YPTS_1211 in NC_010634


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  190 bits (705),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 161/397 (41%), Positives = 244/397 (62%), Gaps = 21/397 (5%)

Query  8    LTDTEIKAAKPKDADY-QLYDGDGLTLLIKSSGSKLWQFRYYRPLTKLRTKQSFGAYPAV  66
            LTD  I++AK    +Y +L DGDGLTL I   GS +W+FRYY  +     + S+G YPA+
Sbjct  12   LTDKIIQTAKKPSRGYLRLTDGDGLTLKITDRGSYFWNFRYY--INGRERNMSLGRYPAM  69

Query  67   SLSDARKLRAESRSLLAKEIDP-QEHQKEQVRNSHEAKT--NTFLLVAERWWYLKKAS-V  122
            S+  AR    E R  L + +DP  E++K Q     E KT  +TF +VA  W  LK++   
Sbjct  70   SIEAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWK  129

Query  123  TEDYAQDIWRSLERDVFPVIGDISVTEIKAHTLVKAIQPVQARGALETVRRLCQRINEVM  182
             E  AQ++  +LE+ VFP IG  +++ I +  L+K ++ +  R   ET  R+ QRI  V 
Sbjct  130  NEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVF  187

Query  183  IYAQNTGLIDAVPSINIGKAFEKPQKKNMPSIRPDQLPQLMQTMRT---ANIILPTRCLF  239
             YA +T+ +   P+I + K F     K+ PS+ + +L  + + + T   ++  L+ R L 
Sbjct  188  DYAIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTYGNPKTALALRLL-  245

Query  240  MWQLLTITRPAEAAEARWDEINFDAKEWKIPAARMKMNREHTVPLSDEALTILEMMKPLS  299
               +LT+TR++E   ++W+E+  +++EW IPA RMKMNR H VPLSD AL IL+ +++L 
Sbjct  246  ---ILTMTRSGELRFGQWQEL--QGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLR  300

Query  300  SNREFIFPSRIKPTQSMNSQTVNAALKRAGLGGILVSHGLRSIASTALNEQGF-SPDVIE  358
             N    F +  + T +++  T++ A+KR G +G  V+HG+R+ ASTA+NE G+ +PD IE
Sbjct  301  RNNSPYFVTGNRNT-PLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIE  359

Query  359  AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVNK  395
              LAH D N VR AYNR++YLE+R+ MMQWWAD++ K
Sbjct  360  RQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYIRK  396

86) YPA_0385 in NC_008150


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  186 bits (689),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 131/309 (43%), Positives = 200/309 (65%), Gaps = 15/309 (4%)

Query  31   QNKQQEKLARQGEATNTFEAITREWYQRRYDRW-SESYRLEMMSTFESDVFPYIGYRPIK  89
            ++KQ   LA +    +TFE ++REWYQ +   W +E    ++++T+E  VFP+IG +PI 
Sbjct  96   KKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWKNEKHAQQVITTLEQFVFPFIGKKPIS  155

Query  90   EIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAIITGRAEYNPAPDLASAFAPHKR  149
             I P EL+ V+ KL  R  T    +V+QR   V  YAI T+R   NPA  L+  F +   
Sbjct  156  RISPPELLKVMEKLYDRPETAS--RVKQRIRAVFDYAIQTDRLSRNPAIALPKIFRSTIA  213

Query  150  EHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGTRPGELRQAEWAEFDFDNALWE  209
             + P L   E+  F+  L +Y+ +    LA+RLLILT TR+GELR ++W E++ ++  W+
Sbjct  214  KQ-PSLPARELGIFFKQLDTYGNPK-TALALRLLILTMTRSGELRFGQWQELQGNE--WH  269

Query  210  IPAVRMKMRRPHMVPLPDQAITILKQIQPI---SGRYQFVFPGRIQHSKPISEMTLNVLI  266
            IPA RMKM RPH+VPL+D A+ IL +++++   ++ Y FV   R   + P+S+ TL++ +
Sbjct  270  IPAERMKMNRPHIVPLSDWALEILDELRSLRRNNSPY-FVTGNR---NTPLSDTTLSLAM  325

Query  267  RRIGYGGRATGHGFRHTMSTILHEQGF-NTAWIETQLAHVDKNSIRGTYNHAQYLDGRRE  325
            +R+GY+GRA  HGFR T ST ++E G+ N   IE QLAH D N++R++YN+A+YL+ R+ 
Sbjct  326  KRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQLAHTDENAVRAAYNRAEYLEERHR  385

Query  326  MLQWYADYM  334
            M+QW ADY+
Sbjct  386  MMQWWADYI  394

87) VAPA_1c47340 in NC_022247


> L31763|3|G1|563255|AAB00935.1|Dichelobacter_nodosus_A198|+|418..1623|intA|-|integrase 
A
Length=401

 Score =  176 bits (650),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 124/283 (44%), Positives = 179/283 (64%), Gaps = 7/283 (2%)

Query  4    TFETVARDWLKAKLPTLSNSKHQVQVQNTLERYAFPLLGSRPIDAIPRSELVAAVRAAQA  63
            TFE VAR+W + K P   N KH  QV  TLE++ FP++G +PI  I+ +EL+  +   + 
Sbjct  112  TFEFVAREWYQLKRPEWKNEKHAQQVITTLEQFVFPFIGKKPISRISPPELLKVM--EKL  169

Query  64   GGKIETGHRVASRISAVFDFAQDTGLLPQHGAAGLTRVLIARKTKKPMASIPAEEAGELM  123
             ++ ET+ RV  RI AVFD+A +T+ L+++ A +L +++ +  +K+P  S+PA E G + 
Sbjct  170  YDRPETASRVKQRIRAVFDYAIQTDRLSRNPAIALPKIFRSTIAKQP--SLPARELGIFF  227

Query  124  RAIEGYEDSVTRLGLQLLAHTFVRVGELRRMLWGELKERGAVWVVPEARIKMRIPHVVPL  183
            + ++ Y ++ T L+L+LL  T  R GELR   W EL+  G  W +P  R+KM  PH+VPL
Sbjct  228  KQLDTYGNPKTALALRLLILTMTRSGELRFGQWQELQ--GNEWHIPAERMKMNRPHIVPL  285

Query  184  SRQAQPILAMPRKMTGNGSLVLDSSIHPGHPLSENTLLFALYRLGYRGRMTVHGFRALAS  243
            S  A  IL   R +  N S  + ++ +   PLS+ TL +A+ RLGY GR   HGFRA AS
Sbjct  286  SDWALEILDELRSLRRNNSPYFVTG-NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATAS  344

Query  244  TVLNERSGFPHDVIERQLAHKETDAVRAAYNRAEYLTRRRELM  286
            T +NE +    D IERQLAH + +AVRAAYNRAEYL  R+ +M
Sbjct  345  TAMNESGLWNPDAIERQLAHTDENAVRAAYNRAEYLEERHRMM  387