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Homologs of acfD gene of FJ209017

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Fbal_1310
( YP_003912589.1 )

hypothetical protein

NC_014541
(Ferrimonas balearica DSM 9799)

0.0

2) Shal_3494
( YP_001675698.1 )

hypothetical protein

NC_010334
(Shewanella halifaxensis HAW-EB4)

0.0

3) yghJ
( YP_003236130.1 )

lipoprotein AcfD-like protein

NC_013364
(Escherichia coli 11128)

0.0

4) LY180_15365
( YP_008566137.1 )

Accessory colonization factor AcfD

NC_022364
(Escherichia coli LY180)

0.0

5) ECSE_3249
( YP_002294524.1 )

hypothetical protein

NC_011415
(Escherichia coli SE11)

0.0

6) EKO11_0748
( YP_005276462.1 )

putative lipoprotein AcfD precursor

NC_016902
(Escherichia coli KO11FL)

0.0

7) yghJ
( YP_006163902.1 )

inner membrane lipoprotein

NC_017660
(Escherichia coli KO11FL)

0.0

8) UMNK88_3721
( YP_006135420.1 )

accessory colonization factor protein AcfD

NC_017641
(Escherichia coli UMNK88)

0.0

9) yghJ
( YP_006125855.1 )

accessory colonization factor

NC_017635
(Escherichia coli W)

0.0

10) yghJ
( YP_006174599.1 )

inner membrane lipoprotein

NC_017664
(Escherichia coli W)

0.0

11) ECO55CA74_17575
( YP_006160631.1 )

lipoprotein acfD-like protein precursor

NC_017656
(Escherichia coli RM12579)

0.0

12) yghJ
( YP_003501165.1 )

lipoprotein acfD-like protein precursor

NC_013941
(Escherichia coli CB9615)

0.0

13) yghJ
( YP_006130273.1 )

putative inner membrane lipoprotein

NC_017638
(Escherichia coli DH1)

0.0

14) EcDH1_0723
( YP_006090696.1 )

hypothetical protein

NC_017625
(Escherichia coli DH1)

0.0

15) ECBD_0765
( YP_003035019.1 )

lipoprotein AcfD-like protein

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

0.0

16) yghJ
( YP_002927888.1 )

putative inner membrane lipoprotein

NC_012759
(Escherichia coli K-12)

0.0

17) yghJ
( YP_491170.1 )

inner membrane lipoprotein

NC_007779
(Escherichia coli K-12)

0.0

18) yghJ
( YP_026189.1 )

predicted inner membrane lipoprotein

NC_000913
(Escherichia coli K12)

0.0

19) yghJ
( YP_006170072.1 )

Putative lipoprotein acfD-like protein precursor

NC_017663
(Escherichia coli P12b)

0.0

20) yghJ
( YP_002557823.1 )

lipoprotein acfD homolog

NC_011993
(Escherichia coli LF82)

0.0

21) NRG857_14720
( YP_006121288.1 )

inner membrane lipoprotein

NC_017634
(Escherichia coli NRG 857C)

0.0

22) EcE24377A_3432
( YP_001464429.1 )

hypothetical protein

NC_009801
(Escherichia coli E24377A)

0.0

23) yghJ
( YP_002414113.1 )

inner membrane lipoprotein

NC_011751
(Escherichia coli UMN026)

0.0

24) acfD
( YP_006097548.1 )

accessory colonization factor

NC_017626
(Escherichia coli 042)

0.0

25) EcHS_A3142
( YP_001459760.1 )

hypothetical protein

NC_009800
(Escherichia coli HS)

0.0

26) EcSMS35_3251
( YP_001745231.1 )

hypothetical protein

NC_010498
(Escherichia coli SMS-3-5)

0.0

27) O3M_04130
( YP_006768505.1 )

inner membrane lipoprotein

NC_018650
(Escherichia coli 2009EL-2050)

0.0

28) O3O_21560
( YP_006782612.1 )

inner membrane lipoprotein

NC_018661
(Escherichia coli 2009EL-2071)

0.0

29) O3K_04095
( YP_006777549.1 )

inner membrane lipoprotein

NC_018658
(Escherichia coli 2011C-3493)

0.0

30) yghJ
( YP_002404344.1 )

inner membrane lipoprotein

NC_011748
(Escherichia coli 55989)

0.0

31) yghJ
( YP_854419.1 )

lipoprotein AcfD-like

NC_008563
(Escherichia coli APEC O1)

0.0

32) yghJ
( YP_003000555.1 )

yghJ

NC_012892
(Escherichia coli BL21(DE3))

0.0

33) yghJ
( YP_003055417.1 )

inner membrane lipoprotein

NC_012971
(Escherichia coli BL21(DE3))

0.0

34) ECOK1_3385
( YP_006102500.1 )

putative lipoprotein

NC_017628
(Escherichia coli IHE3034)

0.0

35) ECOPMV1_03270
( YP_008573044.1 )

Procyclic acidic repetitive protein (PARP)

NC_022370
(Escherichia coli PMV-1)

0.0

36) yghJ
( YP_003046028.1 )

putative inner membrane lipoprotein

NC_012967
(Escherichia coli REL606)

0.0

37) yghJ
( YP_002392955.1 )

inner membrane lipoprotein

NC_011742
(Escherichia coli S88)

0.0

38) UM146_01530
( YP_006109247.1 )

putative lipoprotein AcfD-like precursor

NC_017632
(Escherichia coli UM146)

0.0

39) yghJ
( YP_542367.1 )

lipoprotein AcfD-like

NC_007946
(Escherichia coli UTI89)

0.0

40) yghJ
( YP_002388453.1 )

inner membrane lipoprotein

NC_011741
(Escherichia coli IAI1)

0.0

41) yghJ
( YP_002399471.1 )

inner membrane lipoprotein

NC_011745
(Escherichia coli ED1a)

0.0

42) yghJ
( YP_006145506.1 )

putative inner membrane lipoprotein

NC_017646
(Escherichia coli CE10)

0.0

43) yghJ
( YP_002409370.1 )

inner membrane lipoprotein

NC_011750
(Escherichia coli IAI39)

0.0

44) yghJ
( YP_006107365.1 )

putative lipoprotein AcfD-like precursor

NC_017631
(Escherichia coli ABU 83972)

0.0

45) yghJ
( YP_006155471.1 )

putative lipoprotein AcfD-like precursor

NC_017652
(Escherichia coli clone D i14)

0.0

46) yghJ
( YP_006150552.1 )

putative lipoprotein AcfD-like precursor

NC_017651
(Escherichia coli clone D i2)

0.0

47) yghJ
( YP_002330723.1 )

inner membrane lipoprotein

NC_011601
(Escherichia coli E2348/69)

0.0

48) ETEC_3241
( YP_006116782.1 )

accessory colonization factor

NC_017633
(Escherichia coli ETEC H10407)

0.0

49) ECNA114_3049
( YP_006140162.1 )

hypothetical protein

NC_017644
(Escherichia coli NA114)

0.0

50) yghJ
( YP_002384010.1 )

inner membrane lipoprotein

NC_011740
(Escherichia fergusonii ATCC 35469)

0.0

51) ECP_3050
( YP_670934.1 )

lipoprotein AcfD

NC_008253
(Escherichia coli 536)

0.0

52) ECSF_2797
( YP_003350787.1 )

hypothetical protein

NC_013654
(Escherichia coli SE15)

0.0

• Sequence Alignments

1) O3Y_03935 in NC_016944


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 2027 bits (7700),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1280/1337 (96%), Positives = 1314/1337 (99%), Gaps = 4/1337 (0%)

Query  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60
             MK+RIVSLIVLGFLIGCKHESIITPTVPADGSG+NALNPGLVGGYLPDIGVPDPIIS+SM
Sbjct  1     MKVRIVSLIVLGFLIGCKHESIITPTVPADGSGDNALNPGLVGGYLPDIGVPDPIISISM  60

Query  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120
             TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL
Sbjct  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120

Query  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180
             SLISADEYR SPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ
Sbjct  121   SLISADEYRYSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180

Query  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240
             FLEAITEKIANDNQVDKQPSTHVPNISPSFT+GTSSNLNSPFVSANAEESLSYIPTD+IP
Sbjct  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTDIIP  240

Query  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300
             SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDII+FSIDTFELGS
Sbjct  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFELGS  300

Query  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360
             TRANKT+FYISELGKDN+GKNAEALIHRYA+IDDSKLIIPDKVTQIFSLYPNVINEVISL
Sbjct  301   TRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKLIIPDKVTQIFSLYPNVINEVISL  360

Query  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKsaids  420
             SLPNGDIELDIGDGKTQIVPGEF+KQFD GLAALIDQSISPISRFKFEDSLPKKKSAIDS
Sbjct  361   SLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKKKSAIDS  420

Query  421   essqiqdiiNKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480
             ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP
Sbjct  421   ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480

Query  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540
             VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG
Sbjct  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540

Query  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSND--  598
             K+MVLGNARYNSVLVCPNGFSWGG VKNGTCSLSSD DDMANFFSNVIRYLTGSTSND  
Sbjct  541   KMMVLGNARYNSVLVCPNGFSWGGGVKNGTCSLSSDSDDMANFFSNVIRYLTGSTSNDFN  600

Query  599   -VIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDY  657
              VIVGTNIPEVYFKSSGQ+MG KANFELDSRFSKQTQQLTSFHDLDV+T+PL+IINAYDY
Sbjct  601   DVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQTQQLTSFHDLDVKTMPLVIINAYDY  660

Query  658   KGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT-NNSEISRLLD  716
             KGKNINSPYDIPLSADV+SPKLSRSDV+DLIDYINNGGSVLMMETIINT NN+E+ RLLD
Sbjct  661   KGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINTQNNGEVFRLLD  720

Query  717   SAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINS  776
             SAGIAFGIGNSVVA+GNGPSGG PDRPRSQREHGIWVIERY+AV+DESSGQQTLPYVI+S
Sbjct  721   SAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDDESSGQQTLPYVIKS  780

Query  777   DGSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVA  836
             DGS+EWKYIVENRPDDKPKLEVASWVES +GDKLITHYAFIDESQHWKKDISGKIIYNVA
Sbjct  781   DGSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQHWKKDISGKIIYNVA  840

Query  837   GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLY  896
             GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSEC NSEFHYEINCLEYRPGNSIPITGGLY
Sbjct  841   GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCLEYRPGNSIPITGGLY  900

Query  897   VPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMS  956
             VPRYT+IKLGESEANAMVKAANLGTNI ALYQHERYFRTKGK G+RLNSVDLNRIYQNMS
Sbjct  901   VPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGTRLNSVDLNRIYQNMS  960

Query  957   VWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEK  1016
             VWLWNDLDYRYDDKQSDELGF +FTQYLNCYTSN+AGGNTTCP ELKDEL QLGMIY+EK
Sbjct  961   VWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAELKDELIQLGMIYGEK  1020

Query  1017  SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMR  1076
             SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIK D+R+YPGEVTTR+GGGDITLDMR
Sbjct  1021  SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGEVTTRTGGGDITLDMR  1080

Query  1077  NNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPR  1136
             NNTAAWFAGNR PTGQWAEAHQPFSVSVSGETSPVTITIAL DDLTGREKHELGLKRPPR
Sbjct  1081  NNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDLTGREKHELGLKRPPR  1140

Query  1137  MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSG  1196
             MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAP+YIDGKWRNPL SG
Sbjct  1141  MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPFYIDGKWRNPLSSG  1200

Query  1197  APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRK  1256
             APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEG DGDKNRK
Sbjct  1201  APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGVDGDKNRK  1260

Query  1257  ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS  1316
             ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS
Sbjct  1261  ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS  1320

Query  1317  AEAPFNVDGATEVVNNL  1333
             AEAPFNVDGATEVVNNL
Sbjct  1321  AEAPFNVDGATEVVNNL  1337

2) VCM66_0802 in NC_012578


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 2027 bits (7700),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1280/1337 (96%), Positives = 1314/1337 (99%), Gaps = 4/1337 (0%)

Query  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60
             MK+RIVSLIVLGFLIGCKHESIITPTVPADGSG+NALNPGLVGGYLPDIGVPDPIIS+SM
Sbjct  1     MKVRIVSLIVLGFLIGCKHESIITPTVPADGSGDNALNPGLVGGYLPDIGVPDPIISISM  60

Query  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120
             TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL
Sbjct  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120

Query  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180
             SLISADEYR SPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ
Sbjct  121   SLISADEYRYSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180

Query  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240
             FLEAITEKIANDNQVDKQPSTHVPNISPSFT+GTSSNLNSPFVSANAEESLSYIPTD+IP
Sbjct  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTDIIP  240

Query  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300
             SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDII+FSIDTFELGS
Sbjct  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFELGS  300

Query  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360
             TRANKT+FYISELGKDN+GKNAEALIHRYA+IDDSKLIIPDKVTQIFSLYPNVINEVISL
Sbjct  301   TRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKLIIPDKVTQIFSLYPNVINEVISL  360

Query  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKsaids  420
             SLPNGDIELDIGDGKTQIVPGEF+KQFD GLAALIDQSISPISRFKFEDSLPKKKSAIDS
Sbjct  361   SLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKKKSAIDS  420

Query  421   essqiqdiiNKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480
             ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP
Sbjct  421   ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480

Query  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540
             VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG
Sbjct  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540

Query  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSND--  598
             K+MVLGNARYNSVLVCPNGFSWGG VKNGTCSLSSD DDMANFFSNVIRYLTGSTSND  
Sbjct  541   KMMVLGNARYNSVLVCPNGFSWGGGVKNGTCSLSSDSDDMANFFSNVIRYLTGSTSNDFN  600

Query  599   -VIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDY  657
              VIVGTNIPEVYFKSSGQ+MG KANFELDSRFSKQTQQLTSFHDLDV+T+PL+IINAYDY
Sbjct  601   DVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQTQQLTSFHDLDVKTMPLVIINAYDY  660

Query  658   KGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT-NNSEISRLLD  716
             KGKNINSPYDIPLSADV+SPKLSRSDV+DLIDYINNGGSVLMMETIINT NN+E+ RLLD
Sbjct  661   KGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINTQNNGEVFRLLD  720

Query  717   SAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINS  776
             SAGIAFGIGNSVVA+GNGPSGG PDRPRSQREHGIWVIERY+AV+DESSGQQTLPYVI+S
Sbjct  721   SAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDDESSGQQTLPYVIKS  780

Query  777   DGSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVA  836
             DGS+EWKYIVENRPDDKPKLEVASWVES +GDKLITHYAFIDESQHWKKDISGKIIYNVA
Sbjct  781   DGSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQHWKKDISGKIIYNVA  840

Query  837   GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLY  896
             GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSEC NSEFHYEINCLEYRPGNSIPITGGLY
Sbjct  841   GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCLEYRPGNSIPITGGLY  900

Query  897   VPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMS  956
             VPRYT+IKLGESEANAMVKAANLGTNI ALYQHERYFRTKGK G+RLNSVDLNRIYQNMS
Sbjct  901   VPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGTRLNSVDLNRIYQNMS  960

Query  957   VWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEK  1016
             VWLWNDLDYRYDDKQSDELGF +FTQYLNCYTSN+AGGNTTCP ELKDEL QLGMIY+EK
Sbjct  961   VWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAELKDELIQLGMIYGEK  1020

Query  1017  SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMR  1076
             SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIK D+R+YPGEVTTR+GGGDITLDMR
Sbjct  1021  SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGEVTTRTGGGDITLDMR  1080

Query  1077  NNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPR  1136
             NNTAAWFAGNR PTGQWAEAHQPFSVSVSGETSPVTITIAL DDLTGREKHELGLKRPPR
Sbjct  1081  NNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDLTGREKHELGLKRPPR  1140

Query  1137  MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSG  1196
             MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAP+YIDGKWRNPL SG
Sbjct  1141  MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPFYIDGKWRNPLSSG  1200

Query  1197  APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRK  1256
             APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEG DGDKNRK
Sbjct  1201  APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGVDGDKNRK  1260

Query  1257  ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS  1316
             ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS
Sbjct  1261  ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS  1320

Query  1317  AEAPFNVDGATEVVNNL  1333
             AEAPFNVDGATEVVNNL
Sbjct  1321  AEAPFNVDGATEVVNNL  1337

3) VCD_003484 in NC_012668


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 2027 bits (7700),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1280/1337 (96%), Positives = 1314/1337 (99%), Gaps = 4/1337 (0%)

Query  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60
             MK+RIVSLIVLGFLIGCKHESIITPTVPADGSG+NALNPGLVGGYLPDIGVPDPIIS+SM
Sbjct  1     MKVRIVSLIVLGFLIGCKHESIITPTVPADGSGDNALNPGLVGGYLPDIGVPDPIISISM  60

Query  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120
             TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL
Sbjct  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120

Query  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180
             SLISADEYR SPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ
Sbjct  121   SLISADEYRYSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180

Query  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240
             FLEAITEKIANDNQVDKQPSTHVPNISPSFT+GTSSNLNSPFVSANAEESLSYIPTD+IP
Sbjct  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTDIIP  240

Query  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300
             SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDII+FSIDTFELGS
Sbjct  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFELGS  300

Query  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360
             TRANKT+FYISELGKDN+GKNAEALIHRYA+IDDSKLIIPDKVTQIFSLYPNVINEVISL
Sbjct  301   TRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKLIIPDKVTQIFSLYPNVINEVISL  360

Query  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKsaids  420
             SLPNGDIELDIGDGKTQIVPGEF+KQFD GLAALIDQSISPISRFKFEDSLPKKKSAIDS
Sbjct  361   SLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKKKSAIDS  420

Query  421   essqiqdiiNKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480
             ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP
Sbjct  421   ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480

Query  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540
             VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG
Sbjct  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540

Query  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSND--  598
             K+MVLGNARYNSVLVCPNGFSWGG VKNGTCSLSSD DDMANFFSNVIRYLTGSTSND  
Sbjct  541   KMMVLGNARYNSVLVCPNGFSWGGGVKNGTCSLSSDSDDMANFFSNVIRYLTGSTSNDFN  600

Query  599   -VIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDY  657
              VIVGTNIPEVYFKSSGQ+MG KANFELDSRFSKQTQQLTSFHDLDV+T+PL+IINAYDY
Sbjct  601   DVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQTQQLTSFHDLDVKTMPLVIINAYDY  660

Query  658   KGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT-NNSEISRLLD  716
             KGKNINSPYDIPLSADV+SPKLSRSDV+DLIDYINNGGSVLMMETIINT NN+E+ RLLD
Sbjct  661   KGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINTQNNGEVFRLLD  720

Query  717   SAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINS  776
             SAGIAFGIGNSVVA+GNGPSGG PDRPRSQREHGIWVIERY+AV+DESSGQQTLPYVI+S
Sbjct  721   SAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDDESSGQQTLPYVIKS  780

Query  777   DGSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVA  836
             DGS+EWKYIVENRPDDKPKLEVASWVES +GDKLITHYAFIDESQHWKKDISGKIIYNVA
Sbjct  781   DGSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQHWKKDISGKIIYNVA  840

Query  837   GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLY  896
             GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSEC NSEFHYEINCLEYRPGNSIPITGGLY
Sbjct  841   GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCLEYRPGNSIPITGGLY  900

Query  897   VPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMS  956
             VPRYT+IKLGESEANAMVKAANLGTNI ALYQHERYFRTKGK G+RLNSVDLNRIYQNMS
Sbjct  901   VPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGTRLNSVDLNRIYQNMS  960

Query  957   VWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEK  1016
             VWLWNDLDYRYDDKQSDELGF +FTQYLNCYTSN+AGGNTTCP ELKDEL QLGMIY+EK
Sbjct  961   VWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAELKDELIQLGMIYGEK  1020

Query  1017  SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMR  1076
             SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIK D+R+YPGEVTTR+GGGDITLDMR
Sbjct  1021  SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGEVTTRTGGGDITLDMR  1080

Query  1077  NNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPR  1136
             NNTAAWFAGNR PTGQWAEAHQPFSVSVSGETSPVTITIAL DDLTGREKHELGLKRPPR
Sbjct  1081  NNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDLTGREKHELGLKRPPR  1140

Query  1137  MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSG  1196
             MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAP+YIDGKWRNPL SG
Sbjct  1141  MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPFYIDGKWRNPLSSG  1200

Query  1197  APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRK  1256
             APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEG DGDKNRK
Sbjct  1201  APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGVDGDKNRK  1260

Query  1257  ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS  1316
             ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS
Sbjct  1261  ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS  1320

Query  1317  AEAPFNVDGATEVVNNL  1333
             AEAPFNVDGATEVVNNL
Sbjct  1321  AEAPFNVDGATEVVNNL  1337

4) Vch1786_I0350 in NC_016445


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 2027 bits (7700),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1280/1337 (96%), Positives = 1314/1337 (99%), Gaps = 4/1337 (0%)

Query  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60
             MK+RIVSLIVLGFLIGCKHESIITPTVPADGSG+NALNPGLVGGYLPDIGVPDPIIS+SM
Sbjct  1     MKVRIVSLIVLGFLIGCKHESIITPTVPADGSGDNALNPGLVGGYLPDIGVPDPIISISM  60

Query  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120
             TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL
Sbjct  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120

Query  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180
             SLISADEYR SPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ
Sbjct  121   SLISADEYRYSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180

Query  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240
             FLEAITEKIANDNQVDKQPSTHVPNISPSFT+GTSSNLNSPFVSANAEESLSYIPTD+IP
Sbjct  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTDIIP  240

Query  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300
             SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDII+FSIDTFELGS
Sbjct  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFELGS  300

Query  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360
             TRANKT+FYISELGKDN+GKNAEALIHRYA+IDDSKLIIPDKVTQIFSLYPNVINEVISL
Sbjct  301   TRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKLIIPDKVTQIFSLYPNVINEVISL  360

Query  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKsaids  420
             SLPNGDIELDIGDGKTQIVPGEF+KQFD GLAALIDQSISPISRFKFEDSLPKKKSAIDS
Sbjct  361   SLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKKKSAIDS  420

Query  421   essqiqdiiNKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480
             ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP
Sbjct  421   ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480

Query  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540
             VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG
Sbjct  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540

Query  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSND--  598
             K+MVLGNARYNSVLVCPNGFSWGG VKNGTCSLSSD DDMANFFSNVIRYLTGSTSND  
Sbjct  541   KMMVLGNARYNSVLVCPNGFSWGGGVKNGTCSLSSDSDDMANFFSNVIRYLTGSTSNDFN  600

Query  599   -VIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDY  657
              VIVGTNIPEVYFKSSGQ+MG KANFELDSRFSKQTQQLTSFHDLDV+T+PL+IINAYDY
Sbjct  601   DVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQTQQLTSFHDLDVKTMPLVIINAYDY  660

Query  658   KGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT-NNSEISRLLD  716
             KGKNINSPYDIPLSADV+SPKLSRSDV+DLIDYINNGGSVLMMETIINT NN+E+ RLLD
Sbjct  661   KGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINTQNNGEVFRLLD  720

Query  717   SAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINS  776
             SAGIAFGIGNSVVA+GNGPSGG PDRPRSQREHGIWVIERY+AV+DESSGQQTLPYVI+S
Sbjct  721   SAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDDESSGQQTLPYVIKS  780

Query  777   DGSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVA  836
             DGS+EWKYIVENRPDDKPKLEVASWVES +GDKLITHYAFIDESQHWKKDISGKIIYNVA
Sbjct  781   DGSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQHWKKDISGKIIYNVA  840

Query  837   GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLY  896
             GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSEC NSEFHYEINCLEYRPGNSIPITGGLY
Sbjct  841   GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCLEYRPGNSIPITGGLY  900

Query  897   VPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMS  956
             VPRYT+IKLGESEANAMVKAANLGTNI ALYQHERYFRTKGK G+RLNSVDLNRIYQNMS
Sbjct  901   VPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGTRLNSVDLNRIYQNMS  960

Query  957   VWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEK  1016
             VWLWNDLDYRYDDKQSDELGF +FTQYLNCYTSN+AGGNTTCP ELKDEL QLGMIY+EK
Sbjct  961   VWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAELKDELIQLGMIYGEK  1020

Query  1017  SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMR  1076
             SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIK D+R+YPGEVTTR+GGGDITLDMR
Sbjct  1021  SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGEVTTRTGGGDITLDMR  1080

Query  1077  NNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPR  1136
             NNTAAWFAGNR PTGQWAEAHQPFSVSVSGETSPVTITIAL DDLTGREKHELGLKRPPR
Sbjct  1081  NNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDLTGREKHELGLKRPPR  1140

Query  1137  MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSG  1196
             MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAP+YIDGKWRNPL SG
Sbjct  1141  MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPFYIDGKWRNPLSSG  1200

Query  1197  APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRK  1256
             APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEG DGDKNRK
Sbjct  1201  APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGVDGDKNRK  1260

Query  1257  ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS  1316
             ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS
Sbjct  1261  ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS  1320

Query  1317  AEAPFNVDGATEVVNNL  1333
             AEAPFNVDGATEVVNNL
Sbjct  1321  AEAPFNVDGATEVVNNL  1337

5) VC0845 in NC_002505


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 2027 bits (7700),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1280/1337 (96%), Positives = 1314/1337 (99%), Gaps = 4/1337 (0%)

Query  1     MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM  60
             MK+RIVSLIVLGFLIGCKHESIITPTVPADGSG+NALNPGLVGGYLPDIGVPDPIIS+SM
Sbjct  1     MKVRIVSLIVLGFLIGCKHESIITPTVPADGSGDNALNPGLVGGYLPDIGVPDPIISISM  60

Query  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120
             TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL
Sbjct  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL  120

Query  121   SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180
             SLISADEYR SPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ
Sbjct  121   SLISADEYRYSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ  180

Query  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP  240
             FLEAITEKIANDNQVDKQPSTHVPNISPSFT+GTSSNLNSPFVSANAEESLSYIPTD+IP
Sbjct  181   FLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTDIIP  240

Query  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS  300
             SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDII+FSIDTFELGS
Sbjct  241   SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFELGS  300

Query  301   TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL  360
             TRANKT+FYISELGKDN+GKNAEALIHRYA+IDDSKLIIPDKVTQIFSLYPNVINEVISL
Sbjct  301   TRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKLIIPDKVTQIFSLYPNVINEVISL  360

Query  361   SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKsaids  420
             SLPNGDIELDIGDGKTQIVPGEF+KQFD GLAALIDQSISPISRFKFEDSLPKKKSAIDS
Sbjct  361   SLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKKKSAIDS  420

Query  421   essqiqdiiNKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480
             ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP
Sbjct  421   ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP  480

Query  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540
             VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG
Sbjct  481   VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG  540

Query  541   KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSND--  598
             K+MVLGNARYNSVLVCPNGFSWGG VKNGTCSLSSD DDMANFFSNVIRYLTGSTSND  
Sbjct  541   KMMVLGNARYNSVLVCPNGFSWGGGVKNGTCSLSSDSDDMANFFSNVIRYLTGSTSNDFN  600

Query  599   -VIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDY  657
              VIVGTNIPEVYFKSSGQ+MG KANFELDSRFSKQTQQLTSFHDLDV+T+PL+IINAYDY
Sbjct  601   DVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQTQQLTSFHDLDVKTMPLVIINAYDY  660

Query  658   KGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINT-NNSEISRLLD  716
             KGKNINSPYDIPLSADV+SPKLSRSDV+DLIDYINNGGSVLMMETIINT NN+E+ RLLD
Sbjct  661   KGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINTQNNGEVFRLLD  720

Query  717   SAGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINS  776
             SAGIAFGIGNSVVA+GNGPSGG PDRPRSQREHGIWVIERY+AV+DESSGQQTLPYVI+S
Sbjct  721   SAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDDESSGQQTLPYVIKS  780

Query  777   DGSIEWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVA  836
             DGS+EWKYIVENRPDDKPKLEVASWVES +GDKLITHYAFIDESQHWKKDISGKIIYNVA
Sbjct  781   DGSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQHWKKDISGKIIYNVA  840

Query  837   GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLY  896
             GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSEC NSEFHYEINCLEYRPGNSIPITGGLY
Sbjct  841   GKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCLEYRPGNSIPITGGLY  900

Query  897   VPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMS  956
             VPRYT+IKLGESEANAMVKAANLGTNI ALYQHERYFRTKGK G+RLNSVDLNRIYQNMS
Sbjct  901   VPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGTRLNSVDLNRIYQNMS  960

Query  957   VWLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEK  1016
             VWLWNDLDYRYDDKQSDELGF +FTQYLNCYTSN+AGGNTTCP ELKDEL QLGMIY+EK
Sbjct  961   VWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAELKDELIQLGMIYGEK  1020

Query  1017  SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMR  1076
             SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIK D+R+YPGEVTTR+GGGDITLDMR
Sbjct  1021  SGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGEVTTRTGGGDITLDMR  1080

Query  1077  NNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPR  1136
             NNTAAWFAGNR PTGQWAEAHQPFSVSVSGETSPVTITIAL DDLTGREKHELGLKRPPR
Sbjct  1081  NNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDLTGREKHELGLKRPPR  1140

Query  1137  MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSG  1196
             MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAP+YIDGKWRNPL SG
Sbjct  1141  MSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPFYIDGKWRNPLSSG  1200

Query  1197  APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRK  1256
             APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEG DGDKNRK
Sbjct  1201  APIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGVDGDKNRK  1260

Query  1257  ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS  1316
             ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS
Sbjct  1261  ATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNS  1320

Query  1317  AEAPFNVDGATEVVNNL  1333
             AEAPFNVDGATEVVNNL
Sbjct  1321  AEAPFNVDGATEVVNNL  1337

6) VC0395_A0370 in NC_009457


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1897 bits (7207),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1202/1256 (96%), Positives = 1233/1256 (99%), Gaps = 4/1256 (0%)

Query  5     FQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVLSLISADEYRDSPVRQENLQIL  64
             FQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVLSLISADEYR SPVRQENLQIL
Sbjct  82    FQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVLSLISADEYRYSPVRQENLQIL  141

Query  65    MKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPST  124
             MKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPST
Sbjct  142   MKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPST  201

Query  125   HVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIPSLGRLLDSQGRVINGVSYFSN  184
             HVPNISPSFT+GTSSNLNSPFVSANAEESLSYIPTD+IPSLGRLLDSQGRVINGVSYFSN
Sbjct  202   HVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTDIIPSLGRLLDSQGRVINGVSYFSN  261

Query  185   NTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGSTRANKTDFYISELGKDNEGKN  244
             NTRGITGVDKTGAILNDGSFEFSWGDII+FSIDTFELGSTRANKT+FYISELGKDN+GKN
Sbjct  262   NTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFELGSTRANKTEFYISELGKDNQGKN  321

Query  245   AEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPG  304
             AEALIHRYA+IDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPG
Sbjct  322   AEALIHRYANIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPG  381

Query  305   EFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKsaidsessqiqdiiNKLWGATDTVQA  364
             EF+KQFD GLAALIDQSISPISRFKFEDSLPKKKSAIDSESSQIQDIINKLWGATDTVQA
Sbjct  382   EFLKQFDYGLAALIDQSISPISRFKFEDSLPKKKSAIDSESSQIQDIINKLWGATDTVQA  441

Query  365   NGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWD  424
             NGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWD
Sbjct  442   NGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWD  501

Query  425   SNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGKLMVLGNARYNSVLVCPNGFS  484
             SNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGK+MVLGNARYNSVLVCPNGFS
Sbjct  502   SNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGKMMVLGNARYNSVLVCPNGFS  561

Query  485   WGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSND---VIVGTNIPEVYFKSSGQTMG  541
             WGG VKNGTCSLSSD DDMANFFSNVIRYLTGSTSND   VIVGTNIPEVYFKSSGQ+MG
Sbjct  562   WGGGVKNGTCSLSSDSDDMANFFSNVIRYLTGSTSNDFNDVIVGTNIPEVYFKSSGQAMG  621

Query  542   SKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGKNINSPYDIPLSADVGSPK  601
              KANFELDSRFSKQTQQLTSFHDLDV+T+PL+IINAYDYKGKNINSPYDIPLSADV+SPK
Sbjct  622   LKANFELDSRFSKQTQQLTSFHDLDVKTMPLVIINAYDYKGKNINSPYDIPLSADVDSPK  681

Query  602   LSRSDVTDLIDYINNGGSVLMMETIINT-NNSEISRLLDSAGIAFGIGNSVVADGNGPSG  660
             LSRSDV+DLIDYINNGGSVLMMETIINT NN+E+ RLLDSAGIAFGIGNSVVA+GNGPSG
Sbjct  682   LSRSDVSDLIDYINNGGSVLMMETIINTQNNGEVFRLLDSAGIAFGIGNSVVANGNGPSG  741

Query  661   GHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSIEWKYIVENRPDDKPKLE  720
             G PDRPRSQREHGIWVIERY+AV+DESSGQQTLPYVI+SDGS+EWKYIVENRPDDKPKLE
Sbjct  742   GYPDRPRSQREHGIWVIERYSAVDDESSGQQTLPYVIKSDGSVEWKYIVENRPDDKPKLE  801

Query  721   VASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAF  780
             VASWVES +GDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAF
Sbjct  802   VASWVESGTGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAF  861

Query  781   KNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAA  840
             KNSSGQRAYSEC NSEFHYEINCLEYRPGNSIPITGGLYVPRYT+IKLGESEANAMVKAA
Sbjct  862   KNSSGQRAYSECENSEFHYEINCLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAA  921

Query  841   NLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGF  900
             NLGTNI ALYQHERYFRTKGK G+RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGF
Sbjct  922   NLGTNIYALYQHERYFRTKGKFGTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGF  981

Query  901   KVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPL  960
              +FTQYLNCYTSN+AGGNTTCP ELKDEL QLGMIY+EKSGSYAGQMDPSYPLNYMEKPL
Sbjct  982   EIFTQYLNCYTSNQAGGNTTCPAELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPL  1041

Query  961   TRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAH  1020
             TRLMLGRSFWDLDIK D+R+YPGEVTTR+GGGDITLDMRNNTAAWFAGNR PTGQWAEAH
Sbjct  1042  TRLMLGRSFWDLDIKADIRNYPGEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAH  1101

Query  1021  QPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPY  1080
             QPFSVSVSGETSPVTITIAL DDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPY
Sbjct  1102  QPFSVSVSGETSPVTITIALVDDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPY  1161

Query  1081  GGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLN  1140
             GGLIYAQGGNSQQVKLTFSGTIDAP+YIDGKWRNPL SGAPIGEVVSDTFIFTAPKANLN
Sbjct  1162  GGLIYAQGGNSQQVKLTFSGTIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLN  1221

Query  1141  ADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISV  1200
             ADGYLGGIEQFAKDLDQFSADLNDFYARDEG DGDKNRKATDKSMPNNRHHFVNDVAISV
Sbjct  1222  ADGYLGGIEQFAKDLDQFSADLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISV  1281

Query  1201  GAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1256
             GAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL
Sbjct  1282  GAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

7) VC395_0861 in NC_012582


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1809 bits (6870),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1143/1196 (96%), Positives = 1174/1196 (99%), Gaps = 4/1196 (0%)

Query  1     MKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPST  60
             MKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPST
Sbjct  142   MKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPST  201

Query  61    HVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIPSLGRLLDSQGRVINGVSYFSN  120
             HVPNISPSFT+GTSSNLNSPFVSANAEESLSYIPTD+IPSLGRLLDSQGRVINGVSYFSN
Sbjct  202   HVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTDIIPSLGRLLDSQGRVINGVSYFSN  261

Query  121   NTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGSTRANKTDFYISELGKDNEGKN  180
             NTRGITGVDKTGAILNDGSFEFSWGDII+FSIDTFELGSTRANKT+FYISELGKDN+GKN
Sbjct  262   NTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFELGSTRANKTEFYISELGKDNQGKN  321

Query  181   AEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPG  240
             AEALIHRYA+IDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPG
Sbjct  322   AEALIHRYANIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPG  381

Query  241   EFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKsaidsessqiqdiiNKLWGATDTVQA  300
             EF+KQFD GLAALIDQSISPISRFKFEDSLPKKKSAIDSESSQIQDIINKLWGATDTVQA
Sbjct  382   EFLKQFDYGLAALIDQSISPISRFKFEDSLPKKKSAIDSESSQIQDIINKLWGATDTVQA  441

Query  301   NGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWD  360
             NGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWD
Sbjct  442   NGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWD  501

Query  361   SNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGKLMVLGNARYNSVLVCPNGFS  420
             SNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGK+MVLGNARYNSVLVCPNGFS
Sbjct  502   SNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGKMMVLGNARYNSVLVCPNGFS  561

Query  421   WGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSND---VIVGTNIPEVYFKSSGQTMG  477
             WGG VKNGTCSLSSD DDMANFFSNVIRYLTGSTSND   VIVGTNIPEVYFKSSGQ+MG
Sbjct  562   WGGGVKNGTCSLSSDSDDMANFFSNVIRYLTGSTSNDFNDVIVGTNIPEVYFKSSGQAMG  621

Query  478   SKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGKNINSPYDIPLSADVGSPK  537
              KANFELDSRFSKQTQQLTSFHDLDV+T+PL+IINAYDYKGKNINSPYDIPLSADV+SPK
Sbjct  622   LKANFELDSRFSKQTQQLTSFHDLDVKTMPLVIINAYDYKGKNINSPYDIPLSADVDSPK  681

Query  538   LSRSDVTDLIDYINNGGSVLMMETIINT-NNSEISRLLDSAGIAFGIGNSVVADGNGPSG  596
             LSRSDV+DLIDYINNGGSVLMMETIINT NN+E+ RLLDSAGIAFGIGNSVVA+GNGPSG
Sbjct  682   LSRSDVSDLIDYINNGGSVLMMETIINTQNNGEVFRLLDSAGIAFGIGNSVVANGNGPSG  741

Query  597   GHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSIEWKYIVENRPDDKPKLE  656
             G PDRPRSQREHGIWVIERY+AV+DESSGQQTLPYVI+SDGS+EWKYIVENRPDDKPKLE
Sbjct  742   GYPDRPRSQREHGIWVIERYSAVDDESSGQQTLPYVIKSDGSVEWKYIVENRPDDKPKLE  801

Query  657   VASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAF  716
             VASWVES +GDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAF
Sbjct  802   VASWVESGTGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAF  861

Query  717   KNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAA  776
             KNSSGQRAYSEC NSEFHYEINCLEYRPGNSIPITGGLYVPRYT+IKLGESEANAMVKAA
Sbjct  862   KNSSGQRAYSECENSEFHYEINCLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAA  921

Query  777   NLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGF  836
             NLGTNI ALYQHERYFRTKGK G+RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGF
Sbjct  922   NLGTNIYALYQHERYFRTKGKFGTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGF  981

Query  837   KVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPL  896
              +FTQYLNCYTSN+AGGNTTCP ELKDEL QLGMIY+EKSGSYAGQMDPSYPLNYMEKPL
Sbjct  982   EIFTQYLNCYTSNQAGGNTTCPAELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPL  1041

Query  897   TRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAH  956
             TRLMLGRSFWDLDIK D+R+YPGEVTTR+GGGDITLDMRNNTAAWFAGNR PTGQWAEAH
Sbjct  1042  TRLMLGRSFWDLDIKADIRNYPGEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAH  1101

Query  957   QPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPY  1016
             QPFSVSVSGETSPVTITIAL DDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPY
Sbjct  1102  QPFSVSVSGETSPVTITIALVDDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPY  1161

Query  1017  GGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIGEVVSDTFIFTAPKANLN  1076
             GGLIYAQGGNSQQVKLTFSGTIDAP+YIDGKWRNPL SGAPIGEVVSDTFIFTAPKANLN
Sbjct  1162  GGLIYAQGGNSQQVKLTFSGTIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLN  1221

Query  1077  ADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISV  1136
             ADGYLGGIEQFAKDLDQFSADLNDFYARDEG DGDKNRKATDKSMPNNRHHFVNDVAISV
Sbjct  1222  ADGYLGGIEQFAKDLDQFSADLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISV  1281

Query  1137  GAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1192
             GAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL
Sbjct  1282  GAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

8) VV1_0767 in NC_004459


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1474 bits (5594),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 865/1348 (65%), Positives = 1117/1348 (83%), Gaps = 28/1348 (2%)

Query  1     MKRSLLSLLIASMLVACGSEDRvlapvlpptvepel----------pDIGVDDPIIVSAL  50
             MK  ++SL++ + L++C  E  + + V +     +           PDIGV DPII  ++
Sbjct  1     MKVRIVSLIVLGFLIGCKHESIITPTVPADGSGDNALNPGLVGGYLPDIGVPDPIISISM  60

Query  51    SLDGHLMLSGSIECNGGPANQFDVPQKEDVVCMVQGRTLATFTTPYVAEQTRSRAVNVEV  110
             +LDG+L + +S+ CN+  A++F+++QK++V C ++GR++ATFT+P+ A++  +R  + EV
Sbjct  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKN-GRNTDSEV  119

Query  111   LSLAQADEYKASPVRLSNIQTLIKNIGSTQGNTIELDLSSSRDALTFEHYFDHNLDMPVD  170
             LSL  ADEY+ SPVR  N+Q L+KN+++ +G+ I L + S+ DALTFE+Y+ HNLD+P D
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKD  179

Query  171   EFRALITEKVSNDNQVDKQPTTHVPDVPPAVTPGASSDLTSGFVSASAEESLVYKPSEVI  230
             +F   ITEK++NDNQVDKQP+THVP+++P+ T+G+SS+L S FVSA+AEESL Y P+++I
Sbjct  180   QFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTDII  239

Query  231   LTQAQLLNEQGLPVNGIAYFSAHGRGVTGVDKQGNMIGDGRFEFSWGENISFAIDTFELG  290
              + ++LL+ QG  +NG++YFS + RG+TGVDK G ++ DG FEFSWG+ I+F+IDTFELG
Sbjct  240   PSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFELG  299

Query  291   EIRGNKTAFQLTELAQGNEGKNVEKLVHRYADRTDSKVTLPQQVTEVFALYPNVVNEAIs  350
               R+NKT F ++EL+++N+GKN E L+HRYA+  DSK+ +P++VT++F+LYPNV+NE IS
Sbjct  300   STRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKLIIPDKVTQIFSLYPNVINEVIS  359

Query  351   lslnsddtlldVGGGQTQLVPGEFEQQFAHGLAADIDQQLAKPSARSNFE--LPVVKGAL  408
             LSL ++D  LD+G+G+TQ+VPGEF +QF  GLAA IDQ ++ P +R +FE  LP  K+A+
Sbjct  360   LSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSIS-PISRFKFEDSLPKKKSAI  418

Query  409   DPQASRIQADIQKLWGATHQVQQAGWKKVERFHVFHDSTNFYGSTGNARGQAAVNIANSA  468
             D+++S+IQ  I+KLWGAT+ VQ  GWKKV+RFH+FHDSTNFYGSTG+AR+QAAVNIANSA
Sbjct  419   DSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSA  478

Query  469   FPVMMARNDNNYWIDFGQPKAWDAQGLAFITEAPSSVVPEKVSAETATFNLPFMSIGELG  528
             FPV+MARNDNNYWIDFG+PKAWD+++LAFITEAPS+VVP+KVS +T+TFNLPF+S+GE+G
Sbjct  479   FPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIG  538

Query  529   KGKVMVMGNARYNSVLVCPNGFSWNGGVNQDGSCKQSSDTDDMANFFANTLRYLTGKSAQ  588
             KGK+MV+GNARYNSVLVCPNGFSW GGV+ +G+C  SSD+DDMANFF+N +RYLTG +++
Sbjct  539   KGKMMVLGNARYNSVLVCPNGFSWGGGVK-NGTCSLSSDSDDMANFFSNVIRYLTGSTSN  597

Query  589   E---LTVGTNIPYVYFKRHGQVMGERADFVIDPRLAAKTEQLSDFGYLDPEAMPVVIING  645
             +   + VGTNIP VYFK  GQ MG +A+F +D+R++ +T+QL+ F  LD  +MP+VIIN+
Sbjct  598   DFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQTQQLTSFHDLDVKTMPLVIINA  657

Query  646   YEYLGHAGIGAYDLPMSANINKPKLSQQDVSDLIDYVNRGGNVLMMETIINRANAGEVAR  705
             Y+Y G    ++YD+P+SA+++ PKLS+ DVSDLIDY+N GG+VLMMETIIN  N GEV R
Sbjct  658   YDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINTQNNGEVFR  717

Query  706   LLDSAGIAFGMGQSVVPNGNGPSGGYPDRPRNQRQHGIWVLERYAAVQG-ADGKPVLPYT  764
             LLDSAGIAFG+G+SVV+NGNGPSGGYPDRPR+QR+HGIWV+ERY+AV++ + G+  LPY 
Sbjct  718   LLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDDESSGQQTLPYV  777

Query  765   INDDGSVEWQYQVEGKPDDKPNLEIARWPELDEHGEPKLDKDGNPIINVAFIDESQHWRK  824
             I+ DGSVEW+Y VE +PDDKP+LE+A W  ++     KL      I + AFIDESQHW+K
Sbjct  778   IKSDGSVEWKYIVENRPDDKPKLEVASW--VESGTGDKL------ITHYAFIDESQHWKK  829

Query  825   DKEGHVVVDEHQQPILDQDSLAKAKQRILNAFL-VDGEPAYQECHDSQFHYEVNCLEYRP  883
             D  G ++ +   +P +D+ SL+ AK+++L+AF    G+ AY EC++S+FHYE+NCLEYRP
Sbjct  830   DISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCLEYRP  889

Query  884   GNGIPTGGGMHVPHYTELKLGEAESQAMVKAANLGTNIEALYQHERYFRTKGKVGERLSS  943
             GN+IP  GG+ VP+YTE+KLGE+E++AMVKAANLGTNI ALYQHERYFRTKGK G RL+S
Sbjct  890   GNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGTRLNS  949

Query  944   VDLNRIYQNMTVWLWNDLDYRYESSSEDELGFQRFTQFLNCYTNDVAGGNTHCPEEVKSE  1003
             VDLNRIYQNM+VWLWNDLDYRY+    DELGF+ FTQ+LNCYT++ AGGNT CP E+K E
Sbjct  950   VDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAELKDE  1009

Query  1004  LNRLNMVYGDEAGEYAGQMNPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRAFPgeageg  1063
             L +L M+YG+ +G YAGQM+PSYPLNYMEKPLTRLMLGRSFWDLDIK D+R +PGE    
Sbjct  1010  LIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGEVTTR  1069

Query  1064  aggRNVTLDMRNLTTAWFAGNRQPTGQWAVAQQPFTVSVAGEEAPVTITIALADDLTGRE  1123
             +GG ++TLDMRN T+AWFAGNR PTGQWA A+QPF+VSV+GE +PVTITIAL DDLTGRE
Sbjct  1070  TGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDLTGRE  1129

Query  1124  KHELGLQRPPRMTKSFVIGGSHATSQQFTVPYGGLIYAQGGNSEQVSLTFTGTVDAPLYK  1183
             KHELGL+RPPRM+KSFVIGG  +  Q FTVPYGGLIYAQGGNS+QV LTF+GT+DAP+Y 
Sbjct  1130  KHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPFYI  1189

Query  1184  QGKWQNPLSSPAPMGEVISDTFIFTAPKANLNASGYSGGIEQFARDLDRFSADLNDFYAR  1243
             +GKW+NPLSS AP+GEV+SDTFIFTAPKANLNA GY GGIEQFA+DLD+FSADLNDFYAR
Sbjct  1190  DGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYAR  1249

Query  1244  DEGVEGRLNRQATSPSNPNNRHHFVNDVAISIGAAHSGYPVMNGSFNAKSQSLNTAPLNS  1303
             DEGV+G  NR+AT  S PNNRHHFVNDVAIS+GAAHSGYPVMN+SF + S+SLNT PLNS
Sbjct  1250  DEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNS  1309

Query  1304  WLLWHEVGHNAAEAPFNVDGATEVVNNL  1331
             WLLWHEVGHN+AEAPFNVDGATEVVNNL
Sbjct  1310  WLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

9) VVMO6_02757 in NC_014965


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1448 bits (5495),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 861/1348 (64%), Positives = 1116/1348 (83%), Gaps = 28/1348 (2%)

Query  1     MKRSLLSLLIASMLVACGSEDQvlapvlpptvepel----------pDIGVDDPIIVSAL  50
             MK  ++SL++ + L++C  E  + + V +     +           PDIGV DPII  ++
Sbjct  1     MKVRIVSLIVLGFLIGCKHESIITPTVPADGSGDNALNPGLVGGYLPDIGVPDPIISISM  60

Query  51    SLDGHLMLSGSVECNGGPANQFDVPQKEDVVCMVQGRTVATFTTPYVAEQTRSRAVNVEV  110
             +LDG+L + +S+ CN+  A++F+++QK++V C ++GR++ATFT+P+ A++  +R  + EV
Sbjct  61    TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKN-GRNTDSEV  119

Query  111   LSLAQADEYKASPVRLSNIQTLIKNIGSIQGNTIELDLSSSRDALTFEHYFDHNLDMPVD  170
             LSL  ADEY+ SPVR  N+Q L+KN+++I+G+ I L + S+ DALTFE+Y+ HNLD+P D
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKD  179

Query  171   EFRALITEKVSNDNQVDKQPTTHVPDVPPAVTPGASSDLTSGFVSASAEESLVYKPSEVI  230
             +F   ITEK++NDNQVDKQP+THVP+++P+ T+G+SS+L S FVSA+AEESL Y P+++I
Sbjct  180   QFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTDII  239

Query  231   LTQAQLLNEQGLPVNGIAYFSAHGRGVTGVDKQGNMIGDGRFEFSWGENISFAIDTFELG  290
              + ++LL+ QG  +NG++YFS + RG+TGVDK G ++ DG FEFSWG+ I+F+IDTFELG
Sbjct  240   PSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFELG  299

Query  291   EVRGNKTAFQLIELAQGNEGKNVEKLVHRYADRTDSKVTLPQQVTEVFALYPNVVNEAIs  350
               R+NKT F + EL+++N+GKN E L+HRYA+  DSK+ +P++VT++F+LYPNV+NE IS
Sbjct  300   STRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKLIIPDKVTQIFSLYPNVINEVIS  359

Query  351   lslnsddtlldVGGGQTQLVPGEFEQQFAHGLAADIDQQLAKPSARSNFE--LPVVKGAL  408
             LSL ++D  LD+G+G+TQ+VPGEF +QF  GLAA IDQ ++ P +R +FE  LP  K+A+
Sbjct  360   LSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSIS-PISRFKFEDSLPKKKSAI  418

Query  409   DPQASRIQADIQKLWGATHQVQQAGWKKVERFHVFHDSTNFYGSTGNARGQAAVNIANSA  468
             D+++S+IQ  I+KLWGAT+ VQ  GWKKV+RFH+FHDSTNFYGSTG+AR+QAAVNIANSA
Sbjct  419   DSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSA  478

Query  469   FPVMMARNDNNYWIDFGQPKAWDAQGLAFITEApssvvpekvsveTATFNLPFMSIGELG  528
             FPV+MARNDNNYWIDFG+PKAWD+++LAFITEAPS+VVP+KVS +T+TFNLPF+S+GE+G
Sbjct  479   FPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIG  538

Query  529   EGKVMVMGNARYNSVLVCPNGFSWNGGVNQDGSCKQSSDTDDMANFFANTLRYLTGKSAQ  588
              GK+MV+GNARYNSVLVCPNGFSW GGV+ +G+C  SSD+DDMANFF+N +RYLTG +++
Sbjct  539   KGKMMVLGNARYNSVLVCPNGFSWGGGVK-NGTCSLSSDSDDMANFFSNVIRYLTGSTSN  597

Query  589   ELT---VGTNIPYVYFKRHGQVMGERADFVIDPRLAAKTEQLSDFGHLDPEAMPVVIING  645
             ++    VGTNIP VYFK  GQ MG +A+F +D+R++ +T+QL+ F +LD  +MP+VIIN+
Sbjct  598   DFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQTQQLTSFHDLDVKTMPLVIINA  657

Query  646   YEYLGHAGIGAYDLPMSANINKPKLSQQDVSGLIDYVNRGGNVLMMETIINRANAGEVAR  705
             Y+Y G    ++YD+P+SA+++ PKLS+ DVS+LIDY+N GG+VLMMETIIN  N GEV R
Sbjct  658   YDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINTQNNGEVFR  717

Query  706   LLDSAGIAFGMGQSVVPNGNGPSGGYPDRPRNQRQHGIWVLERYAAVQG-ADGKPALPYT  764
             LLDSAGIAFG+G+SVV+NGNGPSGGYPDRPR+QR+HGIWV+ERY+AV++ + G+ +LPY 
Sbjct  718   LLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDDESSGQQTLPYV  777

Query  765   IKDDGSVEWQYQVEGKPDDKPNLEMARWPELDEQGEPVLDKDGNPIINVAFIDESQHWRK  824
             IK DGSVEW+Y VE +PDDKP+LE+A W E    G+ +       I + AFIDESQHW+K
Sbjct  778   IKSDGSVEWKYIVENRPDDKPKLEVASWVE-SGTGDKL-------ITHYAFIDESQHWKK  829

Query  825   DEEGHVVVDEHQQPILDQDSLAKAKQRILNAFL-VNGKPAYQECHDSQFHYEVNCLESRP  883
             D  G ++ +   +P +D+ SL+ AK+++L+AF   +G+ AY EC++S+FHYE+NCLE RP
Sbjct  830   DISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCLEYRP  889

Query  884   GNGIPTGGGMHVPHYTELKLGEAESQAMVKAANLGTNIEVLYQHERYFRTKGKMGERLSS  943
             GN+IP  GG+ VP+YTE+KLGE+E++AMVKAANLGTNI  LYQHERYFRTKGK G RL+S
Sbjct  890   GNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGTRLNS  949

Query  944   VDLNRIYQNMTVWLWNDLDYRYESSSEDELGFQRFTQFLNCYTNDVAGGNTHCPEEVKSE  1003
             VDLNRIYQNM+VWLWNDLDYRY+    DELGF+ FTQ+LNCYT++ AGGNT CP E+K E
Sbjct  950   VDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAELKDE  1009

Query  1004  LNRLNMVYGDEAGEYAGQMNPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRAFPgeageg  1063
             L +L M+YG+ +G YAGQM+PSYPLNYMEKPLTRLMLGRSFWDLDIK D+R +PGE    
Sbjct  1010  LIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGEVTTR  1069

Query  1064  aggRNVTLDMRNLTTAWFAGNRQPTGQWAVAQQPFTVSVAGEEAPVTITIALADDLTGRE  1123
             +GG ++TLDMRN T+AWFAGNR PTGQWA A+QPF+VSV+GE +PVTITIAL DDLTGRE
Sbjct  1070  TGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDLTGRE  1129

Query  1124  KHELGLQRPPRMTKSFVIGGGHATSQQFTVPYGGLIYAQGGNSEQVSLTFTGTVDAPLYK  1183
             KHELGL+RPPRM+KSFVIGG+ +  Q FTVPYGGLIYAQGGNS+QV LTF+GT+DAP+Y 
Sbjct  1130  KHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPFYI  1189

Query  1184  QGKWQNPLSSPAPMGEVISDTFIFTAPKANLNAAGYAGGIEQFALELDRFSADLNDFYAR  1243
             +GKW+NPLSS AP+GEV+SDTFIFTAPKANLNA GY GGIEQFA +LD+FSADLNDFYAR
Sbjct  1190  DGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYAR  1249

Query  1244  DEGVEGRLNRQATSPSNPNNRHHFLNDVAISIGAAHSGYPVMNASFNAKSQSLNTAPLNS  1303
             DEGV+G  NR+AT  S PNNRHHF+NDVAIS+GAAHSGYPVMN SF + S+SLNT PLNS
Sbjct  1250  DEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNS  1309

Query  1304  WLLWHEVGHNAAEAPFNVDGATEVVNNL  1331
             WLLWHEVGHN+AEAPFNVDGATEVVNNL
Sbjct  1310  WLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

10) VPA1376 in NC_004605


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1353 bits (5135),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 798/1346 (60%), Positives = 1067/1346 (80%), Gaps = 46/1346 (3%)

Query  1     MKKTLLSTIVVSLLFGCNYDSYHTDTVVPE------LPPP-----------PEATINVGL  43
             MK  ++S IV+++L+GC+ +S  T TV ++      L P            P++ I++++
Sbjct  1     MKVRIVSLIVLGFLIGCKHESIITPTVPADGSGDNALNPGLVGGYLPDIGVPDPIISISM  60

Query  44    SLDGYLKFVNSSILCNGEPAEHFTVGPSDHVSCVLKADGTPIATYYSPFDSGTDNQARIT  103
             +LDG LKF +SS+LCN++ A HF ++  D+V C +  +G +IAT+ +PFD+  + +   +
Sbjct  61    TLDGNLKF-DSSLLCNDQDASHFQISQKDNVFCTI--NGRSIATFTAPFDANKNGRNTDS  117

Query  104   LEYLKLTDAEEYKDSSTRVQNIQTLIKTMGTIHGDELDLSLEKTSHRLIFKNYLNNQLDV  163
              E L L  A+EY+ S+ R +N+Q L+K M+TIHGD + L +  T + L F NYL ++LD+
Sbjct  118   -EVLSLISADEYRYSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  164   EIDTFKKLLQERLSNDSQTDKQPSTHTPEVEPAVTPGASSDLSQAFVSANAEKSLEYKPK  223
               D F   + E+++ND+Q DKQPSTH P++ P+ T+G+SS+L+ +FVSANAE SL Y P 
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  224   ELILTTGYLVDSFGRSVNGIAYFTSKGRGLTGY-KDGRLIGDGSLEFSWGDTINFGIDTF  282
             ++I + G L+DS GR +NG++YF+++ RG+TG  K G ++ DGS+EFSWGD I F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  283   ELGSTRGNKNTIKLQDLGSGNEGKNIESLVMRFSEENDQSVFVTDKVTEVFSKYPNVINE  342
             ELGSTR+NK  + + +LG +N+GKN E+L+ R+++ +D  +++ DKVT++FS YPNVINE
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKLIIPDKVTQIFSLYPNVINE  356

Query  343   AISLSLSNEDIQLDLGNGNTEVVKGEFEKQFESGLAEEIDKELGR-QKLAFGEQYRKPKQ  401
              ISLSL+N DI+LD+G+G+T++V GEF KQF+ GLA  ID+ ++   ++ F +    PK+
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSL--PKK  414

Query  402   IKAVDSDAQNVQRDVERLWGATQQAQREGWKPVERFHIFHDSTNFYGSTGSARAQAAVNI  461
               A+DS++ ++Q  +++LWGAT+  Q +GWK V+RFHIFHDSTNFYGSTGSARAQAAVNI
Sbjct  415   KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNI  474

Query  462   SNKAFPVVMARNDKNYWLDFDKPQAWDENGLAYITEAPSKVKPKKVDASNATFNLPFISI  521
             +N AFPV+MARND+NYW+DF+KP+AWD N+LA+ITEAPS V P KV    +TFNLPFIS+
Sbjct  475   ANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISL  534

Query  522   GDLGKGKVMVMGNARYNSVLVCPNGFSWNGGVNDQGQCTGNTDSDDMANFFNNAFQYLTG  581
             G++GKGK+MV+GNARYNSVLVCPNGFSW GGV++ G C+ ++DSDDMANFF+N ++YLTG
Sbjct  535   GEIGKGKMMVLGNARYNSVLVCPNGFSWGGGVKN-GTCSLSSDSDDMANFFSNVIRYLTG  593

Query  582   KKAGTFS---VATNIPHVYFKRGGQVLGSKASYLIDKRFAQDTQQLDSFSGLDPNDIPLV  638
               +  F+   V+TNIP+VYFK +GQ +G KA++ +D RF+++TQQL SF +LD + +PLV
Sbjct  594   STSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQTQQLTSFHDLDVKTMPLV  653

Query  639   ILNAYSYLGEQGGLGAYDLPMQANLDAPKLTQQDISDLIAYVEDGGSVLMMETIKGQKDS  698
             I+NAY Y G +   ++YD+P+ A++D+PKL++ D+SDLI Y+++GGSVLMMETI   +++
Sbjct  654   IINAYDYKGKNIN-SPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINTQNN  712

Query  699   GVVSRLLDAAGIAFGIGESVARDGNGPNGGYPDRVRSQRQQGIWVLERYAAEDSSNGEGP  758
             G V RLLD+AGIAFGIG+SV  +GNGP+GGYPDR RSQR++GIWV+ERY+A D  ++   
Sbjct  713   GEVFRLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDDESSGQQ  772

Query  759   SLPYVIKEDGSVEWKYIIENRPDDKPKLEVAKWTEINEQGDSKVQVAFIDEAN-------  811
             +LPYVIK DGSVEWKYI+ENRPDDKPKLEVA W E    +    + AFIDE++       
Sbjct  773   TLPYVIKSDGSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQHWKKDIS  832

Query  812   ---FYQDGT---FDNEALTVAKNRILDAFKDNSGKRAYEECTNNEYHYEVNCLEYRPGNK  865
                +Y+ +     DN +L++AKN++LDAFK++SG+RAY EC N+E+HYE+NCLEYRPGN 
Sbjct  833   GKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCLEYRPGNS  892

Query  866   IPISGGLYVPNYTEMKLGEHEAKAMVKAANIGSNIEALYQHERYFRTKGKQGFRLNSVDM  925
             IPI+GGLYVP YTE+KLGE EA+AMVKAAN+G+NI ALYQHERYFRTKGK G RLNSVD+
Sbjct  893   IPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGTRLNSVDL  952

Query  926   SRMYQNLSVWLWNDLRYSYDQEKNDELGFKRFTEFLNCYTDDKAGGNTICPESLKLELQK  985
             +R+YQN+SVWLWNDL Y YD+ ++DELGF  FT++LNCYT ++AGGNT CP  LK EL +
Sbjct  953   NRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAELKDELIQ  1012

Query  986   MDMIYAE--GEYAGYMNPSYPLNYMEKPLTRLMLGRSFWDLDVKVDTRQFPGVASSSGSN  1043
             ++MIY+E  G YAG M+PSYPLNYMEKPLTRLMLGRSFWDLD+K D R++PG  ++  + 
Sbjct  1013  LGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGEVTTR-TG  1071

Query  1044  GGTITLDMSNNVTAWFAGSRQATGQWAQAHVPFTVSVSGAKAPVTITVALADDLTAREKH  1103
             GG ITLDM NN +AWFAG+R +TGQWA+AH PF+VSVSG  +PVTIT+AL DDLT+REKH
Sbjct  1072  GGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDLTGREKH  1131

Query  1104  EVGLKRPPRMTKSFIIGGNKATSETITVPYGGLIYAQGGNSESVQLTFTGTLAAPLFIDG  1163
             E+GLKRPPRM+KSF+IGG+ +  +T+TVPYGGLIYAQGGNS+ V+LTF+GT+ AP++IDG
Sbjct  1132  ELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPFYIDG  1191

Query  1164  SWKNDLDSPAPVGEVVSKSFIYTGPKANLRAENYPGGIEQFAKDLDQFASDLNDFYARDE  1223
              W+N L S AP+GEVVS +FI+T+PKANL A+ Y GGIEQFAKDLDQF++DLNDFYARDE
Sbjct  1192  KWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDE  1251

Query  1224  GLDGQANRKVTGDENPNSRHHFVNDVAISIGAAHSGYPVMnssynlnssninTTPLNDWL  1283
             G+DG+ NRK T+   PN+RHHFVNDVAIS+GAAHSGYPVMN S+  +S ++NT PLN WL
Sbjct  1252  GVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWL  1311

Query  1284  LWHEVGHNAAEAPFVVEGATEVVNNL  1309
             LWHEVGHN+AEAPF V+GATEVVNNL
Sbjct  1312  LWHEVGHNSAEAPFNVDGATEVVNNL  1337

11) VPBB_A1251 in NC_019971


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1284 bits (4873),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 747/1198 (63%), Positives = 977/1198 (82%), Gaps = 25/1198 (2%)

Query  1     MGTIHGDELDLSLEKTSHRLIFKNYLNNQLDVEIDTFKKLLQERLSNDSQTDKQPSTHTP  60
             M+TIHGD + L +  T + L F NYL ++LD+  D F   + E+++ND+Q DKQPSTH P
Sbjct  145   MATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPSTHVP  204

Query  61    EVEPAVTPGASSDLSQAFVSANAEKSLEYKPKELILTTGYLVDSFGRSVNGIAYFTSKGR  120
             ++ P+ T+G+SS+L+ +FVSANAE SL Y P ++I + G L+DS GR +NG++YF+++ R
Sbjct  205   NISPSFTSGTSSNLNSPFVSANAEESLSYIPTDIIPSLGRLLDSQGRVINGVSYFSNNTR  264

Query  121   GLTGY-KDGRLIGDGSLEFSWGDTINFGIDTFELGSTRGNKNTIKLQDLGSGNEGKNIES  179
             G+TG  K G ++ DGS+EFSWGD I F+IDTFELGSTR+NK  + + +LG +N+GKN E+
Sbjct  265   GITGVDKTGAILNDGSFEFSWGDIITFSIDTFELGSTRANKTEFYISELGKDNQGKNAEA  324

Query  180   LVMRFSEENDQSVFVTDKVTEVFSKYPNVINEAISLSLSNEDIQLDLGNGNTEVVKGEFE  239
             L+ R+++ +D  +++ DKVT++FS YPNVINE ISLSL+N DI+LD+G+G+T++V GEF 
Sbjct  325   LIHRYANIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPGEFL  384

Query  240   KQFESGLAEDIDKELGR-QKLAFGEQYREPKQIKAVDSDAQNVQRDVERLWGATQQAQRE  298
             KQF+ GLA  ID+ ++   ++ F +    PK+  A+DS++ ++Q  +++LWGAT+  Q +
Sbjct  385   KQFDYGLAALIDQSISPISRFKFEDSL--PKKKSAIDSESSQIQDIINKLWGATDTVQAN  442

Query  299   GWKPVERFHIFHDSTNFYGSTGSARAQAAVNISNKAFPVVMARNDKNYWIDFDKPQAWDE  358
             GWK V+RFHIFHDSTNFYGSTGSARAQAAVNI+N AFPV+MARND+NYWIDF+KP+AWD 
Sbjct  443   GWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFPVLMARNDNNYWIDFGKPKAWDS  502

Query  359   NGLAYITEAPSKVKPKKVDASNATFNLPFISIGDLGKGKVMVMGNARYNSVLVCPNGFSW  418
             N+LA+ITEAPS V P KV    +TFNLPFIS+G++GKGK+MV+GNARYNSVLVCPNGFSW
Sbjct  503   NSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGKMMVLGNARYNSVLVCPNGFSW  562

Query  419   NGGVNDQGQCTGNTDSDDMANFFNNAFQYLTGKKAGTFS---VATNIPHVYFKRGGQVLG  475
              GGV++ G C+ ++DSDDMANFF+N ++YLTG  +  F+   V+TNIP+VYFK +GQ +G
Sbjct  563   GGGVKN-GTCSLSSDSDDMANFFSNVIRYLTGSTSNDFNDVIVGTNIPEVYFKSSGQAMG  621

Query  476   SKASYLIDKRFAQDTQQLDSFSGLDPNDIPLVILNAYSYLGEQGGLGAYDLPMQANLDAP  535
              KA++ +D RF+++TQQL SF +LD + +PLVI+NAY Y G +   ++YD+P+ A++D+P
Sbjct  622   LKANFELDSRFSKQTQQLTSFHDLDVKTMPLVIINAYDYKGKNIN-SPYDIPLSADVDSP  680

Query  536   KLTQQDISDLIAYVEDGGSVLMMETIKGQKDSGVVSRLLDAAGIAFGIGESVARDGNGPN  595
             KL++ D+SDLI Y+++GGSVLMMETI   +++G V RLLD+AGIAFGIG+SV  +GNGP+
Sbjct  681   KLSRSDVSDLIDYINNGGSVLMMETIINTQNNGEVFRLLDSAGIAFGIGNSVVANGNGPS  740

Query  596   GGYPDRVRSQRQQGIWVLERYAAEDSSNGEGPSLPYVIKEDGSVEWKYIIENRPDDKPKL  655
             GGYPDR RSQR++GIWV+ERY+A D  ++   +LPYVIK DGSVEWKYI+ENRPDDKPKL
Sbjct  741   GGYPDRPRSQREHGIWVIERYSAVDDESSGQQTLPYVIKSDGSVEWKYIVENRPDDKPKL  800

Query  656   EVAKWIEINEQGDSKVQVAFIDEAN----------FYQDGT---FDNEALTVAKNRILDA  702
             EVA W+E    +    + AFIDE++          +Y+ +     DN +L++AKN++LDA
Sbjct  801   EVASWVESGTGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDA  860

Query  703   FKDNSGKRAYEECTNNEYHYEVNCLEYRPGNKIPISGGLYVPNYTEMKLGEHEAKAMVKA  762
             FK++SG+RAY EC N+E+HYE+NCLEYRPGN IPI+GGLYVP YTE+KLGE EA+AMVKA
Sbjct  861   FKNSSGQRAYSECENSEFHYEINCLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKA  920

Query  763   ANIGSNIEALYQHERYFRTKGKQGFRLNSVDMSRMYQNLSVWLWNDLRYSYDQEKNDELG  822
             AN+G+NI ALYQHERYFRTKGK G RLNSVD++R+YQN+SVWLWNDL Y YD+ ++DELG
Sbjct  921   ANLGTNIYALYQHERYFRTKGKFGTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELG  980

Query  823   FKRFTEFLNCYTDDKAGGNTICPESLKLELQKMDMIYAE--GEYAGYMNPSYPLNYMEKP  880
             F  FT++LNCYT ++AGGNT CP  LK EL +++MIY+E  G YAG M+PSYPLNYMEKP
Sbjct  981   FEIFTQYLNCYTSNQAGGNTTCPAELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKP  1040

Query  881   LTRLMLGRSFWDLDVKVDTRQFPGVASSSGSNGGTITLDMSNNVTAWFAGSRQATGQWAQ  940
             LTRLMLGRSFWDLD+K D R++PG  ++  + GG ITLDM NN +AWFAG+R +TGQWA+
Sbjct  1041  LTRLMLGRSFWDLDIKADIRNYPGEVTTR-TGGGDITLDMRNNTAAWFAGNRLPTGQWAE  1099

Query  941   AHVPFTVSVSGAKAPVTITVALADDLTAREKHEVGLKRPPRMTKSFIIGGNKATSETITV  1000
             AH PF+VSVSG  +PVTIT+AL DDLT+REKHE+GLKRPPRM+KSF+IGG+ +  +T+TV
Sbjct  1100  AHQPFSVSVSGETSPVTITIALVDDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTV  1159

Query  1001  PYGGLIYAQGGNSESVQLTFTGTLAAPLFIDGSWKNDLDSPAPVGEVVSKSFIYTGPKAN  1060
             PYGGLIYAQGGNS+ V+LTF+GT+ AP++IDG W+N L S AP+GEVVS +FI+T+PKAN
Sbjct  1160  PYGGLIYAQGGNSQQVKLTFSGTIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKAN  1219

Query  1061  LRAENYPGGIEQFAKDLDQFASDLNDFYARDEGLDGQANRKVTGDENPNSRHHFVNDVAI  1120
             L A+ Y GGIEQFAKDLDQF++DLNDFYARDEG+DG+ NRK T+   PN+RHHFVNDVAI
Sbjct  1220  LNADGYLGGIEQFAKDLDQFSADLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAI  1279

Query  1121  SIGAAHSGYPVMnssynlnssninTTPLNDWLLWHEVGHNAAEAPFVVEGATEVVNNL  1178
             S+GAAHSGYPVMN S+  +S ++NT PLN WLLWHEVGHN+AEAPF V+GATEVVNNL
Sbjct  1280  SVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

12) Fbal_1310 in NC_014541


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1187 bits (4503),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 702/1284 (55%), Positives = 950/1284 (74%), Gaps = 47/1284 (3%)

Query  41    TLTLDGTLRFAEPVRCNGKPAIDFEITVGDSVSCHYKGTILASFTDVQPDPAARTGTTTV  100
             ++TLDG L+F  ++ CN++ A +F+I+  D+V C  +G  +A+FT   P  A + G  T 
Sbjct  59    SMTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTA--PFDANKNGRNTD  116

Query  101   KKTLMLGHSNGFAERPHAATNATALVRSYGVTHGDTITLSL-TALQDLKFKDTFLNQLDL  159
                L L  ++ +   P    N   L+++ +  HGD I+L + ++L+ L F + + ++LDL
Sbjct  117   SEVLSLISADEYRYSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  160   TPEAFAELLAQQ-ANDSQTDKLPSTHVPDIEAAVNPNASPDLNAGFVAADAESGYQYQPE  218
               + F E ++++ AND+Q DK PSTHVP+I ++  + +S++LN+ FV+A+AE +  Y P 
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  219   QTILASGRLTDRDGKPVAGVTYFSRASRGVTD--------AEGKFEFVWGDTVRFGLDTF  270
             + I + GRL D +G+ + GV+YFS  +RG+T+         +G FEF WGD + F++DTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  271   ELGQVRGNQQQVSLTELGEGDVGLNIDALVRRYADDQLDHWQLPERVTEVFAAYPNVINE  330
             ELG  R+N+ +  ++ELG ++ G N +AL++RYA+ +     +P++VT++F+ YPNVINE
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKLIIPDKVTQIFSLYPNVINE  356

Query  331   IISLSLSSQPRELALGDGQVQWLPAEFAAQFDSGLAADIDQQLCQRDC---EGDAVMARG  387
             +ISLSL++   EL +GDG+ Q +P+EF  QFD GLAA IDQ +        E+     ++
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKKKS  416

Query  388   AVD-DSGQILADIQKLWGSSADAQQQGWKPVSRFHVFHDSTNFYGSTGHARGQAAVNIAN  446
             A+D +S+QI   I+KLWG++   Q +GWK V RFH+FHDSTNFYGSTG AR+QAAVNIAN
Sbjct  417   AIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIAN  476

Query  447   SAFPVMMARNDNNYWIPFGAPKAWDQHGLAYITEAPSTVVPERVGGETATFNLPFVSIGE  506
             SAFPV+MARNDNNYWI FG PKAWD ++LA+ITEAPSTVVP++V+ +T+TFNLPF+S+GE
Sbjct  477   SAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGE  536

Query  507   IGQGKVMVMGNARYHSILVCPNGYSWQGGVDADGQCRQSGDSDDMKHFFHNALRYLTGQS  566
             IG+GK+MV+GNARY+S+LVCPNG+SW GGV  +G C  S+DSDDM +FF N +RYLTG +
Sbjct  537   IGKGKMMVLGNARYNSVLVCPNGFSWGGGVK-NGTCSLSSDSDDMANFFSNVIRYLTGST  595

Query  567   GG-FT---VGTNVAYAYFKRGGQVAGEKVPFALAPAFGVTTEQLQRFDDLDPNQYPLLIL  622
             +  F    VGTN++  YFK +GQ  G K  F L + F+  T+QL  F+DLD +  PL+I+
Sbjct  596   SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQTQQLTSFHDLDVKTMPLVII  655

Query  623   NGFEYLIDPNGNHYDLPLRADLERPKLSQDDATALIDYVSRGGSILVMETVLEGEKAGAL  682
             N+++Y      + YD+PL AD++ PKLS+ D + LIDY++ GGS+L+MET+++ ++ G +
Sbjct  656   NAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINTQNNGEV  715

Query  683   ARLLDSAGIAFGMNGSVVADGNGPSAGYPDRVRNQRGHGIWVLERYAAVEGDNG--PTLP  740
              RLLDSAGIAFG+  SVVA+GNGPS+GYPDR R+QR HGIWV+ERY+AV+++++   TLP
Sbjct  716   FRLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDDESSGQQTLP  775

Query  741   YRIE-NGQVVWLYQEQNKPDDKPKLEVAKWTETGADGQLVTHVAFIDER-----------  788
             Y I  +G V W Y  +N+PDDKPKLEVA W E+G++++L+TH AFIDE            
Sbjct  776   YVIKSDGSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQHWKKDISGKI  835

Query  789   ----------ESQDVAADKARILAAFTREDGSPAYQECRDPNYHYEVNCLEYRPGNEIDV  838
                       ++  ++  K ++L AF    G  AY EC ++++HYE+NCLEYRPGN I +
Sbjct  836   IYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCLEYRPGNSIPI  895

Query  839   TGGMFVPRYTELDLGDAQARAMVKAADLGTSIERLYQHERYFRSEGKQGQRLSSVDLNRL  898
             TGG++VPRYTE+ LG+++A AMVKAA+LGT+I  LYQHERYFR+ GK G RL+SVDLNR+
Sbjct  896   TGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGTRLNSVDLNRI  955

Query  899   YQNLSVWLWNdldyryddtlddELGFERFTQFLNCYSDDRAGGGTRCPAELRAELVAQGM  958
             YQN+SVWLWNDLDYRYDD   DELGFE FTQ+LNCY+ ++AGG T CPAEL+ EL+  GM
Sbjct  956   YQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAELKDELIQLGM  1015

Query  959   VWGDDAGEYAGQLNPDYPLNYMEKPLTRLMLGRSFWDLDIVVDVRRFPGEAQGSEGGTVV  1018
             + G+ +G YAGQ++P YPLNYMEKPLTRLMLGRSFWDLDI  D+R +PGE     GG  +
Sbjct  1016  IYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGEVTTRTGGGDI  1075

Query  1019  ALEPNATTTAWYAGNRQPTGQWAVAHQPFTVAVSGTDAPVTVTIALADDLTGREKHELGL  1078
             +L+    T+AW+AGNR PTGQWA AHQPF+V+VSG  +PVT+TIAL DDLTGREKHELGL
Sbjct  1076  TLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDLTGREKHELGL  1135

Query  1079  RRPPRMQQSFTLNAGELGSSHTLTVPYGGLIYVQGRAGESGQVSLSGTVDAPLYQLGKGW  1138
             +RPPRM +SF + +G+    +T+TVPYGGLIY QG  ++  ++++SGT+DAP+Y  GK W
Sbjct  1136  KRPPRMSKSFVI-GGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPFYIDGK-W  1193

Query  1139  VNPQNAPAPIGEVVSHSFVYTAPKANLAASNYGGSPQTFAEQLDQFAADLNDFYARDEGA  1198
              NP ++ APIGEVVS++F++TAPKANL A  Y G+ + FA +LDQF+ADLNDFYARDEG 
Sbjct  1194  RNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGV  1253

Query  1199  EGQANRMATDPARPANRHHFVNDVAISIGAAHSGYPVMNSSFNVDSNEIGLAPLNSWLLW  1258
             +G+ NR ATD + P NRHHFVNDVAIS+GAAHSGYPVMN SF   S  +   PLNSWLLW
Sbjct  1254  DGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLW  1313

Query  1259  HEVGHNAAEAPFNVAGATEVVNNL  1282
             HEVGHN+AEAPFNV GATEVVNNL
Sbjct  1314  HEVGHNSAEAPFNVDGATEVVNNL  1337

13) Shal_3494 in NC_010334


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1162 bits (4405),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 733/1350 (55%), Positives = 995/1350 (74%), Gaps = 76/1350 (5%)

Query  16    GCGDDEPVAPSIPL-----IPLEPS--TPVVPSIPLEPSTPIKLEISVSLDGTLLLGEPI  68
             GC ++  ++P++P       +L+P+     +P I +  + PI + IS++LDG L ++ ++
Sbjct  16    GCKHESIITPTVPADGSGDNALNPGLVGGYLPDIGV--PDPI-ISISMTLDGNLKFDSSL  72

Query  69    RCNDQKPNGFEIEIGDTVSCLYNNMPLLTFSDVRADIARAAAPTERKQLLLIDADEFIEH  128
              CNDQ ++ F+I   D V C  N  ++ TF+    D  + +  T+   L LI ADE+   
Sbjct  73    LCNDQDASHFQISQKDNVFCTINGRSIATFTA-PFDANKNGRNTDSEVLSLISADEYRYS  131

Query  129   PENASNAQTLIKTMGVVRGGQIDIEL-STLQALQFENNYL-NNLSMAEEDF-KNLLEQQA  185
             P    N Q L+K M+ ++G++I + + STL+AL FEN YL +NL ++ ++F   + E+ A
Sbjct  132   PVRQENLQILMKNMATIHGDKISLVFRSTLDALTFEN-YLRHNLDLPKDQFLEAITEKIA  190

Query  186   NDAQADKLPSTHLPDIKPEVSTGTSTDLNAHFVAADAEAAYQYKPEQNILSTAILTDSQG  245
             ND Q DK PSTH+P+I P  ++GTS++LN+ FV+A+AE +  Y P + I S + L DSQG
Sbjct  191   NDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTDIIPSLGRLLDSQG  250

Query  246   KPVAGITYFSRSSRGITDLD--------GSFQFSWGDSVSFGIDTFELGEVRGNQKSYTL  297
             + + G++YFS ++RGIT++D        GSF+FSWGD ++F+IDTFELG  R+N+  + +
Sbjct  251   RVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFELGSTRANKTEFYI  310

Query  298   SQLGEGNNGLNAEALVLRYATSQGQAWQLPARVAEVFARYPNVINEIISLSLSSQEKVLD  357
             S+LG +N+G NAEAL+ RYA  ++    +P +V+++F+ YPNVINE+ISLSL++ +  LD
Sbjct  311   SELGKDNQGKNAEALIHRYANIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELD  370

Query  358   TGNGE-QIIAAKFSKQFELGLARDIDSVLCDINCQQTAKARELLPEVQSEGADIVRALNN  416
              G+G  QI+++ F KQF+ GLA  ID  +  I+     K  + LP          +  + 
Sbjct  371   IGDGKTQIVPGEFLKQFDYGLAALIDQSISPIS---RFKFEDSLP----------KKKSA  417

Query  417   VTDDSGQILADIQRLWGTTS---DAGWNKVSAFHVFHDSTNFYGSTGNARGQATVNIANS  473
             +  +S+QI   I++LWG+T      GW+KV  FH+FHDSTNFYGSTG+AR+QA+VNIANS
Sbjct  418   IDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANS  477

Query  474   AFPVMMARNDNNYWIPFGANKAWDKDTLAYITEAPSTVVPDKVSGETATFNLPFISIGEI  533
             AFPV+MARNDNNYWI FG  KAWD ++LA+ITEAPSTVVPDKVS +T+TFNLPFIS+GEI
Sbjct  478   AFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEI  537

Query  534   GLGKIMVMGNARYNSVLVCPNGYSWNGGIDDKSQCRVASDSDDMKHFFQNSLKYLTNGKS  593
             G GK+MV+GNARYNSVLVCPNG+SW GG+ + + C ++SDSDDM +FF N ++YLT + S
Sbjct  538   GKGKMMVLGNARYNSVLVCPNGFSWGGGVKN-GTCSLSSDSDDMANFFSNVIRYLTGSTS  596

Query  594   G-YS---VGTNMPYVYFKRGGQVTGEQEPFIIDPVFGVTTEQVVSFAGIDPQTMPLLILN  649
               ++   VGTN+P VYFK +GQ  G +  F +D+ F+  T+Q+ SF ++D +TMPL+I+N
Sbjct  597   NDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQTQQLTSFHDLDVKTMPLVIIN  656

Query  650   GFEYTINTSGSHYTLPMQADTTQPKLTQDDVTALIDYVNNGGNIMIMETLAGTNNTGALS  709
             +++Y  +   S Y +P+ AD   PKL++ DV+ LIDY+NNGG++++MET+  T+N G + 
Sbjct  657   AYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINTQNNGEVF  716

Query  710   RLLDSAGIAFGMGGSVVANGNGPSGGYADRVRNQRGDGIWIIERYAAVEGED-GTPTSPY  768
             RLLDSAGIAFG+G SVVANGNGPSGGY+DR R+QR +GIW+IERY+AV++E  G  T PY
Sbjct  717   RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDDESSGQQTLPY  776

Query  769   IINQADGSVDWLYKQQSKPDDKPSLSVAKWVETDEDGVETTHTAFIDESQ----------  818
             +I+ +DGSV+W Y  +++PDDKP L VA WVE++ ++   TH AFIDESQ          
Sbjct  777   VIK-SDGSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQHWKKDISGKI  835

Query  819   -----------TDDLNAAKALILSAFTKSDGSPAYQECTNPNFHYEINCLEYRPGNNIPV  867
                           L+ AK  +L AF +S G  AY EC N++FHYEINCLEYRPGN+IP+
Sbjct  836   IYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCLEYRPGNSIPI  895

Query  868   TGGMFVPRYTQLELGDAQARAMVKAADLGTNIERLYQHELYFRSRAQQGVRLSNVDLNRT  927
             TGG++VPRYT++ LG+++A AMVKAA+LGTNI  LYQHE YFR++++ G RL++VDLNR 
Sbjct  896   TGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGTRLNSVDLNRI  955

Query  928   YQNMTVWLWNNLDYRYESGLDDELGFERFTQFLNCYSDNRAQGGTHCPVElqqqmlslqm  987
             YQNM+VWLWN+LDYRY+    DELGFE FTQ+LNCY+ N+A G T CP EL+++++ L M
Sbjct  956   YQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAELKDELIQLGM  1015

Query  988   ilgqESGEYKGYMNPSYPLNYMEKPLTRLMLGRSFWDLDIKVDPRLFPGEAMGSQGGGQV  1047
             I G+ SG Y G M+PSYPLNYMEKPLTRLMLGRSFWDLDIK D R +PGE     GGG++
Sbjct  1016  IYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGEVTTRTGGGDI  1075

Query  1048  TFDLSHNTAAWFAGNRQPTGQWAVAQQSFTVSVNGSADPVTITVALADDLTGREKHELGL  1107
             T+D+ +NTAAWFAGNR PTGQWA A+Q+F+VSV+G + PVTIT+AL DDLTGREKHELGL
Sbjct  1076  TLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDLTGREKHELGL  1135

Query  1108  KRPPRMTQSFTLNSGDIGSSYSLTSPYGGLIYVQGQGSQEGHNVTLNFTGSVDAPLYQYD  1167
             KRPPRM++SF + +GD     ++T PYGGLIY QG  SQ+   V L F+G++DAP+Y   
Sbjct  1136  KRPPRMSKSFVI-GGDSPKMQTFTVPYGGLIYAQGGNSQQ---VKLTFSGTIDAPFY---  1188

Query  1168  GKGGQWLNPLDSPAPIGEVISQSFVYTaakanlnaanynGSPEQFAKELDTFAEDMNNFY  1227
               +G+W NPL S APIGEV+S++F++TA+KANLNA  Y G+ EQFAK+LD F+ D+N+FY
Sbjct  1189  -IDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFY  1247

Query  1228  SRDEALQGNLNRKATDSSIPTNRHHFVNDIAISIGAAHSGYPVMNASFNAESHNLALTPL  1287
             +RDE+++G+ NRKATD S+P NRHHFVND+AIS+GAAHSGYPVMN SF + S++L   PL
Sbjct  1248  ARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPL  1307

Query  1288  NSWLLWHEVGHNAAEAPFNVDGATEVVNNL  1317
             NSWLLWHEVGHN+AEAPFNVDGATEVVNNL
Sbjct  1308  NSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

14) LY180_15365 in NC_022364


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1014 bits (3842),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 624/1296 (49%), Positives = 911/1296 (71%), Gaps = 80/1296 (6%)

Query  50    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  109
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  110   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  168
              +SL  A+E   S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  169   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  228
             + ++F   + E + N+   DK PSTH + + P+ T+GT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  229   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  280
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  281   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  340
             ELGS R+NK+ + ++ELG + +G N + LIHRY++ +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  341   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  393
             E+I+LSL+NG     +G+G   + +P EF+ QF  G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK  414

Query  394   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  448
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  449   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  508
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  509   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  568
             ISLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRY  590

Query  569   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  628
             L+     ++  + + VGTN+  VYFK  GQ +G  A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDV  647

Query  629   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  688
               +PL+I+N+++Y  +  + PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME ++
Sbjct  648   KTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETII  707

Query  689   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  745
             +   ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R   IWV ERY+AV
Sbjct  708   NT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAV  764

Query  746   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFIDE  798
             D+ +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFIDE
Sbjct  765   DDESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDE  823

Query  799   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  834
             ++H                PE    SL+ AK+++LDAF       +   C +S++HYE+N
Sbjct  824   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEIN  883

Query  835   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQ  894
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI  LYQHE YFRT+G+ 
Sbjct  884   CLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKF  943

Query  895   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  953
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGF  FT++LNCYT+N   G T C+
Sbjct  944   GTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCP  1003

Query  954   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1012
             AELK  LI+  MIYGE S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YP
Sbjct  1004  AELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYP  1063

Query  1013  GAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALAD  1071
             G V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL D
Sbjct  1064  GEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVD  1123

Query  1072  DLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGDSKDNESASFTFTG  1129
             DLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G+  +++   +TF+G
Sbjct  1124  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSG  1181

Query  1130  VVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTAPKKNLNASNYTGGLKQFANDLDTFAS  1189
              + APFY DG W+N L+S AP+GE+ SD+F++TAPK NLNA  Y GG+ QFA+DLD F++
Sbjct  1182  TIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1241

Query  1190  SMNDFYGRNE--EDGKHRMFTYKNLTGHKHRFANDVQISIGDAHSGYPVMNSSFstnstt  1247
              +NDFY+R+E  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +
Sbjct  1242  DLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1301

Query  1248  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1283
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1302  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

15) yghJ in NC_013364


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1014 bits (3845),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 632/1295 (49%), Positives = 916/1295 (71%), Gaps = 77/1295 (5%)

Query  94    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  153
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  154   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  212
              +SL  A+E   S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  213   APEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPS  272
             + ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y P+
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  273   EIILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  324
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  325   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVIN  384
             ELGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  385   EIINLSLSNGAT-LDEGEQVVNL-PNEFIEQFKTGQAKEIDTAICA----KTDGCNEARW  438
             E+I+LSL+NG   LD G+   ++ P EF+ QF  G A  ID +I +    K ++    + 
Sbjct  356   EVISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  439   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  493
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  494   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  553
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  554   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  613
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  614   SDDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  673
             ++   T++    + VGTN+  VYFK  GQ  G  A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVK  648

Query  674   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  733
              MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  734   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  790
                ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  791   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEA  843
             +      +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE+
Sbjct  766   DESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  844   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  879
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  880   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  939
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  940   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  999
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGF  FT++LNCY+++  +G T C+A
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  1000  DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1058
             +LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1059  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1117
              V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1118  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1175
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1182

Query  1176  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1235
             + APFY DG W+N L+S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1242

Query  1236  MNDFYGRDET--SGKHRMFTYKALTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttl  1293
             +NDFY+RDE   ++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L
Sbjct  1243  LNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1302

Query  1294  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1328
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1303  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

16) ECSE_3249 in NC_011415


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1014 bits (3843),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 631/1295 (49%), Positives = 915/1295 (71%), Gaps = 77/1295 (5%)

Query  94    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  153
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  154   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  212
              +SL  A+E   S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  213   APEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPS  272
             + ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y P+
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  273   EIILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  324
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  325   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVIN  384
             ELGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  385   EIINLSLSNGAT-LDEGEQVVNL-PNEFIEQFKTGQAKEIDTAICA----KTDGCNEARW  438
             E+I+LSL+NG   LD G+   ++ P EF+ QF  G A  ID +I +    K ++    + 
Sbjct  356   EVISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  439   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  493
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  494   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  553
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  554   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  613
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  614   SDDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  673
             ++   T++    + VGTN+  VYFK  GQ  G  A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVK  648

Query  674   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  733
              MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  734   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  790
                ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  791   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEA  843
             +      +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE+
Sbjct  766   DESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  844   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  879
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  880   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  939
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  940   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  999
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGF  FT++LNCY+++  +G T C+A
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  1000  DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1058
             +LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1059  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1117
              V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1118  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1175
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1182

Query  1176  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLKQFANDLDTFASS  1235
             + APFY DG W+N L+S AP+GE+ SD+F++T+PK NLNA  Y GG+ QFA+DLD F++ 
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1242

Query  1236  MNDFYGRDET--SGKHRMFTYKALTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttl  1293
             +NDFY+RDE   ++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L
Sbjct  1243  LNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1302

Query  1294  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1328
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1303  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

17) yghJ in NC_017660


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1013 bits (3841),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 624/1296 (49%), Positives = 911/1296 (71%), Gaps = 80/1296 (6%)

Query  94    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  153
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  154   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  212
              +SL  A+E   S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  213   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  272
             + ++F   + E + N+   DK PSTH + + P+ T+GT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  273   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  324
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  325   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  384
             ELGS R+NK+ + ++ELG + +G N + LIHRY++ +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  385   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  437
             E+I+LSL+NG     +G+G   + +P EF+ QF  G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK  414

Query  438   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  492
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  493   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  552
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  553   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  612
             ISLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRY  590

Query  613   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  672
             L+     ++  + + VGTN+  VYFK  GQ +G  A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDV  647

Query  673   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  732
               +PL+I+N+++Y  +  + PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME ++
Sbjct  648   KTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETII  707

Query  733   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  789
             +   ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R   IWV ERY+AV
Sbjct  708   NT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAV  764

Query  790   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFIDE  842
             D+ +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFIDE
Sbjct  765   DDESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDE  823

Query  843   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  878
             ++H                PE    SL+ AK+++LDAF       +   C +S++HYE+N
Sbjct  824   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEIN  883

Query  879   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQ  938
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI  LYQHE YFRT+G+ 
Sbjct  884   CLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKF  943

Query  939   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  997
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGF  FT++LNCYT+N   G T C+
Sbjct  944   GTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCP  1003

Query  998   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1056
             AELK  LI+  MIYGE S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YP
Sbjct  1004  AELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYP  1063

Query  1057  GAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALAD  1115
             G V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL D
Sbjct  1064  GEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVD  1123

Query  1116  DLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGDSKDNESASFTFTG  1173
             DLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G+  +++   +TF+G
Sbjct  1124  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSG  1181

Query  1174  VVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTAPKKNLNASNYTGGLKQFANDLDTFAS  1233
              + APFY DG W+N L+S AP+GE+ SD+F++TAPK NLNA  Y GG+ QFA+DLD F++
Sbjct  1182  TIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1241

Query  1234  SMNDFYGRNE--EDGKHRMFTYKNLTGHKHRFANDVQISIGDAHSGYPVMNSSFstnstt  1291
              +NDFY+R+E  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +
Sbjct  1242  DLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1301

Query  1292  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1327
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1302  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

18) EKO11_0748 in NC_016902


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1013 bits (3841),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 624/1296 (49%), Positives = 911/1296 (71%), Gaps = 80/1296 (6%)

Query  94    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  153
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  154   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  212
              +SL  A+E   S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  213   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  272
             + ++F   + E + N+   DK PSTH + + P+ T+GT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  273   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  324
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  325   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  384
             ELGS R+NK+ + ++ELG + +G N + LIHRY++ +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  385   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  437
             E+I+LSL+NG     +G+G   + +P EF+ QF  G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK  414

Query  438   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  492
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  493   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  552
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  553   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  612
             ISLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRY  590

Query  613   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  672
             L+     ++  + + VGTN+  VYFK  GQ +G  A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDV  647

Query  673   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  732
               +PL+I+N+++Y  +  + PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME ++
Sbjct  648   KTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETII  707

Query  733   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  789
             +   ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R   IWV ERY+AV
Sbjct  708   NT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAV  764

Query  790   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFIDE  842
             D+ +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFIDE
Sbjct  765   DDESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDE  823

Query  843   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  878
             ++H                PE    SL+ AK+++LDAF       +   C +S++HYE+N
Sbjct  824   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEIN  883

Query  879   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQ  938
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI  LYQHE YFRT+G+ 
Sbjct  884   CLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKF  943

Query  939   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  997
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGF  FT++LNCYT+N   G T C+
Sbjct  944   GTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCP  1003

Query  998   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1056
             AELK  LI+  MIYGE S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YP
Sbjct  1004  AELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYP  1063

Query  1057  GAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALAD  1115
             G V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL D
Sbjct  1064  GEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVD  1123

Query  1116  DLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGDSKDNESASFTFTG  1173
             DLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G+  +++   +TF+G
Sbjct  1124  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSG  1181

Query  1174  VVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTAPKKNLNASNYTGGLKQFANDLDTFAS  1233
              + APFY DG W+N L+S AP+GE+ SD+F++TAPK NLNA  Y GG+ QFA+DLD F++
Sbjct  1182  TIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1241

Query  1234  SMNDFYGRNE--EDGKHRMFTYKNLTGHKHRFANDVQISIGDAHSGYPVMNSSFstnstt  1291
              +NDFY+R+E  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +
Sbjct  1242  DLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1301

Query  1292  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1327
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1302  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

19) UMNK88_3721 in NC_017641


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1013 bits (3838),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 631/1296 (49%), Positives = 917/1296 (71%), Gaps = 79/1296 (6%)

Query  94    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  153
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  154   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  212
              +SL  A+E   S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  213   APEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEEFYQYQPS  272
             + ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAEE   Y P+
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  273   EIILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  324
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  325   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDEVRKVFAEYPNVIN  384
             ELGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  385   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  437
             E+I+LSL+NG     +G+G   + +P EF+ QF  G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK  414

Query  438   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  492
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  493   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPF  552
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  553   ISLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  612
             ISLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRY  590

Query  613   LSDDKWKPDAKASMIVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDP  672
             L++    ++    +IVGTN+  VYFK  GQ  G  A F++++ F+    ++L+S+ DLD 
Sbjct  591   LTGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDV  647

Query  673   QEMPLLILNGFEYVTQVGNDPYEIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVM  732
             + MPL+I+N+++Y  +  N PY+IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME ++
Sbjct  648   KTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETII  707

Query  733   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAV  789
             +   ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AV
Sbjct  708   NT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAV  764

Query  790   DG------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDE  842
             D+      +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE
Sbjct  765   DDESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDE  823

Query  843   ADH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVN  878
             ++H               K E    SL  AK+K++ AF       +  EC N+ +HYE+N
Sbjct  824   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEIN  883

Query  879   CLEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRK  938
             CLEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ 
Sbjct  884   CLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKF  943

Query  939   GERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCS  998
             G RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGF  FT++LNCY+++  +G T C+
Sbjct  944   GTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCP  1003

Query  999   ADLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1057
             A+LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YP
Sbjct  1004  AELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYP  1063

Query  1058  GAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALAD  1116
             G V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL D
Sbjct  1064  GEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVD  1123

Query  1117  DLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTG  1174
             DLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G
Sbjct  1124  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSG  1181

Query  1175  VVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFAS  1234
              + APFY DG W+N L+S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++
Sbjct  1182  TIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1241

Query  1235  SMNDFYGRDS--EDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnstt  1292
              +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +
Sbjct  1242  DLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1301

Query  1293  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1328
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1302  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

20) yghJ in NC_017635


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1013 bits (3841),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 624/1296 (49%), Positives = 911/1296 (71%), Gaps = 80/1296 (6%)

Query  94    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  153
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  154   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  212
              +SL  A+E   S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  213   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  272
             + ++F   + E + N+   DK PSTH + + P+ T+GT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  273   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  324
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  325   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  384
             ELGS R+NK+ + ++ELG + +G N + LIHRY++ +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  385   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  437
             E+I+LSL+NG     +G+G   + +P EF+ QF  G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK  414

Query  438   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  492
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  493   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  552
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  553   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  612
             ISLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRY  590

Query  613   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  672
             L+     ++  + + VGTN+  VYFK  GQ +G  A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDV  647

Query  673   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  732
               +PL+I+N+++Y  +  + PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME ++
Sbjct  648   KTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETII  707

Query  733   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  789
             +   ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R   IWV ERY+AV
Sbjct  708   NT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAV  764

Query  790   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFIDE  842
             D+ +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFIDE
Sbjct  765   DDESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDE  823

Query  843   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  878
             ++H                PE    SL+ AK+++LDAF       +   C +S++HYE+N
Sbjct  824   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEIN  883

Query  879   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQ  938
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI  LYQHE YFRT+G+ 
Sbjct  884   CLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKF  943

Query  939   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  997
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGF  FT++LNCYT+N   G T C+
Sbjct  944   GTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCP  1003

Query  998   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1056
             AELK  LI+  MIYGE S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YP
Sbjct  1004  AELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYP  1063

Query  1057  GAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALAD  1115
             G V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL D
Sbjct  1064  GEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVD  1123

Query  1116  DLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGDSKDNESASFTFTG  1173
             DLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G+  +++   +TF+G
Sbjct  1124  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSG  1181

Query  1174  VVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTAPKKNLNASNYTGGLKQFANDLDTFAS  1233
              + APFY DG W+N L+S AP+GE+ SD+F++TAPK NLNA  Y GG+ QFA+DLD F++
Sbjct  1182  TIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1241

Query  1234  SMNDFYGRNE--EDGKHRMFTYKNLTGHKHRFANDVQISIGDAHSGYPVMNSSFstnstt  1291
              +NDFY+R+E  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +
Sbjct  1242  DLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1301

Query  1292  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1327
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1302  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

21) yghJ in NC_017664


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1013 bits (3841),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 624/1296 (49%), Positives = 911/1296 (71%), Gaps = 80/1296 (6%)

Query  94    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  153
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  154   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  212
              +SL  A+E   S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  213   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  272
             + ++F   + E + N+   DK PSTH + + P+ T+GT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  273   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  324
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  325   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  384
             ELGS R+NK+ + ++ELG + +G N + LIHRY++ +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  385   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  437
             E+I+LSL+NG     +G+G   + +P EF+ QF  G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK  414

Query  438   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  492
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  493   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  552
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  553   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  612
             ISLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRY  590

Query  613   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  672
             L+     ++  + + VGTN+  VYFK  GQ +G  A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDV  647

Query  673   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  732
               +PL+I+N+++Y  +  + PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME ++
Sbjct  648   KTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETII  707

Query  733   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  789
             +   ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R   IWV ERY+AV
Sbjct  708   NT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAV  764

Query  790   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFIDE  842
             D+ +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFIDE
Sbjct  765   DDESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDE  823

Query  843   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  878
             ++H                PE    SL+ AK+++LDAF       +   C +S++HYE+N
Sbjct  824   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEIN  883

Query  879   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQ  938
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI  LYQHE YFRT+G+ 
Sbjct  884   CLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKF  943

Query  939   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  997
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGF  FT++LNCYT+N   G T C+
Sbjct  944   GTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCP  1003

Query  998   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1056
             AELK  LI+  MIYGE S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YP
Sbjct  1004  AELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYP  1063

Query  1057  GAVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALAD  1115
             G V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL D
Sbjct  1064  GEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVD  1123

Query  1116  DLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGDSKDNESASFTFTG  1173
             DLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G+  +++   +TF+G
Sbjct  1124  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSG  1181

Query  1174  VVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTAPKKNLNASNYTGGLKQFANDLDTFAS  1233
              + APFY DG W+N L+S AP+GE+ SD+F++TAPK NLNA  Y GG+ QFA+DLD F++
Sbjct  1182  TIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1241

Query  1234  SMNDFYGRNE--EDGKHRMFTYKNLTGHKHRFANDVQISIGDAHSGYPVMNSSFstnstt  1291
              +NDFY+R+E  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +
Sbjct  1242  DLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1301

Query  1292  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1327
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1302  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

22) ECO55CA74_17575 in NC_017656


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1010 bits (3828),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 614/1298 (48%), Positives = 907/1298 (70%), Gaps = 85/1298 (6%)

Query  50    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  108
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  109   FSLEDAQELAASDNKKSNAVSLVTSSNSCPADTEQVCLEFSSVIESKRFDSLYKQ-IDLA  167
             +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  168   PEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPTE  227
              ++F   + E + N+   DK PSTH + + P+ T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  228   IIRSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  279
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  280   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTRQNNTRVVPDDVRKVFAEYPNVINE  339
             LGS R+NK+ + ++ELG + +G N + LIHRY+   +++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANI-DDSKLIIPDKVTQIFSLYPNVINE  356

Query  340   IINLSLSNGAT-LDEGEQVVNL-PNEFIEQFNTGQAKEIDTAICAKTDGCNEVRWFSL--  395
             +I+LSL+NG   LD G+   ++ P EF+ QF+ G A  ID +I +       + +F +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISP-------ISRFKFED  409

Query  396   ------TTRNVNDGQIQGVINKLWGVDEDY-----KSVTKFHVFHDSTNFYGSTGNARGQ  444
                   ++ + + +QIQ++INKLWG  +       K V +FH+FHDSTNFYGSTG+AR+Q
Sbjct  410   SLPKKKSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQ  469

Query  445   AVVNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRETATFNL  504
             A VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNL
Sbjct  470   AAVNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNL  529

Query  505   PFISLGQVGKGKLMVIGNPHYNSILRCPNGYSWNGSVNKDGQCTLNSDSDDMKNFMENVL  564
             PFISLG++GKGK+MV+GN++YNS+L CPNG+SW G+V K+G C+L+SDSDDM NF  NV+
Sbjct  530   PFISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVI  588

Query  565   RYLSNDRWLPDAKSNMTVGTNLDTVYFKKHGQVTGNSAAFGFHPDFAGISVEHLSSYGDL  624
             RYL+     ++  +++ VGTN+  VYFK  GQ  G  A F +++ F+    ++L+S+ DL
Sbjct  589   RYLTGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDL  645

Query  625   DPQDMPLLILNGFEYVTQVGGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMEN  684
             D + MPL+I+N+++Y  +    PY +PL AD   PKL++ DV+DLI Y+N+GGSVL+ME 
Sbjct  646   DVKTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMET  705

Query  685   VMSNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQQRATGIWVYERYP  741
             +++   ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R QR  GIWV ERY+
Sbjct  706   IINT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYS  762

Query  742   FVDGKP------PYTIDETTKEVIWKYQQDNKPDDKPKLEVASWQEEVEG-KQVTRYAFI  794
              VD+ +      PY I      V WKY  +N+PDDKPKLEVASW E   G K +T+YAFI
Sbjct  763   AVDDESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFI  821

Query  795   DEAE-----------FKT-------KESLEAAKAKIFEKF------PGLKECKDPTYHYE  830
             DE++           ++        + SL  AK K+++ F       +  EC ++ +HYE
Sbjct  822   DESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYE  881

Query  831   VNCLEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNG  890
             +NCLEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G
Sbjct  882   INCLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKG  941

Query  891   RKGERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYTNDAYTDGTR  950
             + G RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGF  FT++LNCYT++   + T 
Sbjct  942   KFGTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTT  1001

Query  951   CSADLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEK  1009
             C+A+LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +
Sbjct  1002  CPAELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRN  1061

Query  1010  YPGAVSVGGEEVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVAL  1068
             YPG V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL
Sbjct  1062  YPGEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIAL  1121

Query  1069  ADDLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTF  1126
              DDLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF
Sbjct  1122  VDDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTF  1179

Query  1127  TGVVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTF  1186
             +G + APFY DG W+N L+S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F
Sbjct  1180  SGTIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQF  1239

Query  1187  ASSMNDFYGRND--EDGKHRMFTFKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspns  1244
             ++ +NDFY+R++  +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S
Sbjct  1240  SADLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSS  1299

Query  1245  ttlpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1282
              +L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1300  RSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

23) yghJ in NC_013941


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1009 bits (3824),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 613/1298 (48%), Positives = 907/1298 (70%), Gaps = 85/1298 (6%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAASDNKKSNAVSLVTSSNSCPADTEQVCLEFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P+ T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IIRSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTRQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+   +++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANI-DDSKLIIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT-LDEGEQVVNL-PNEFIEQFNTGQAKEIDTAICAKTDGCNEVRWFSL--  439
             +I+LSL+NG   LD G+   ++ P EF+ QF+ G A  ID +I +       + +F +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISP-------ISRFKFED  409

Query  440   ------TTRNVNDGQIQGVINKLWGVDEDY-----KSVTKFHVFHDSTNFYGSTGNARGQ  488
                   ++ + + +QIQ++INKLWG  +       K V +FH+FHDSTNFYGSTG+AR+Q
Sbjct  410   SLPKKKSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQ  469

Query  489   AVVNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRETATFNL  548
             A VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNL
Sbjct  470   AAVNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNL  529

Query  549   PFIPLGQVGKGKLMVIGNPHYNSILRCPNGYSWNGSVNKDGQCTLNSDSDDMKNFMENVL  608
             PFI+LG++GKGK+MV+GN++YNS+L CPNG+SW G+V K+G C+L+SDSDDM NF  NV+
Sbjct  530   PFISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVI  588

Query  609   RYLSNDRWLPDAKSNMTVGTNLDTVYFKKHGQVTGNSAAFGFHPDFAGISVEHLSSYGDL  668
             RYL+     ++  +++ VGTN+  VYFK  GQ  G  A F +++ F+    ++L+S+ DL
Sbjct  589   RYLTGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDL  645

Query  669   DPQDMPLLILNGFEYVTQVGGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMEN  728
             D + MPL+I+N+++Y  +    PY +PL AD   PKL++ DV+DLI Y+N+GGSVL+ME 
Sbjct  646   DVKTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMET  705

Query  729   VMSNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQQRATGIWVYERYP  785
             +++   ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R QR  GIWV ERY+
Sbjct  706   IINT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYS  762

Query  786   FVDGKP------PYTIDETTKEVIWKYQQDNKPDDKPKLEVASWQEEVEG-KQVTRYAFI  838
              VD+ +      PY I      V WKY  +N+PDDKPKLEVASW E   G K +T+YAFI
Sbjct  763   AVDDESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFI  821

Query  839   DEAE-----------FKT-------KESLEAAKAKIFEKF------PGLKECKDPTYHYE  874
             DE++           ++        + SL  AK K+++ F       +  EC ++ +HYE
Sbjct  822   DESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYE  881

Query  875   VNCLEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNG  934
             +NCLEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G
Sbjct  882   INCLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKG  941

Query  935   RKGERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYTNDAYTDGTR  994
             + G RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGF  FT++LNCYT++   + T 
Sbjct  942   KFGTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTT  1001

Query  995   CSADLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEK  1053
             C+A+LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +
Sbjct  1002  CPAELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRN  1061

Query  1054  YPGAVSVGGEEVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVAL  1112
             YPG V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL
Sbjct  1062  YPGEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIAL  1121

Query  1113  ADDLTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTF  1170
              DDLTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF
Sbjct  1122  VDDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTF  1179

Query  1171  TGVVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTF  1230
             +G + APFY DG W+N L+S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F
Sbjct  1180  SGTIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQF  1239

Query  1231  ASSMNDFYGRND--EDGKHRMFTFKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspns  1288
             ++ +NDFY+R++  +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S
Sbjct  1240  SADLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSS  1299

Query  1289  ttlpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1326
              +L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1300  RSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

24) yghJ in NC_017638


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1005 bits (3808),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 625/1295 (49%), Positives = 912/1295 (71%), Gaps = 79/1295 (6%)

Query  50    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  108
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  109   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  167
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  168   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  227
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  228   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  279
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  280   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  339
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  340   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  392
             +I+LSL+NG     +G+G   + +P EF+ QF+ G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  393   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  447
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  448   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  507
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  508   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  567
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  568   SDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  627
             ++    ++    + VGTN+  VYFK  GQ  G  A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVK  648

Query  628   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  687
              MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  688   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  744
                ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  745   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEA  797
             +      +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE+
Sbjct  766   DESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  798   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  833
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  834   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  893
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  894   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  953
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGF  FT++LNCY+++  +G T C+A
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  954   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1012
             +LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1013  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1071
              V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1072  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1129
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1182

Query  1130  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1189
             + APFY DG W+N L+S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1242

Query  1190  MNDFYGRDS--EDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1247
             +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1243  LNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1302

Query  1248  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1282
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1303  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

25) ECBD_0765 in NC_012947


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1004 bits (3807),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 625/1295 (49%), Positives = 912/1295 (71%), Gaps = 79/1295 (6%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF+ G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  612   SDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  671
             ++    ++    + VGTN+  VYFK  GQ  G  A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVK  648

Query  672   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  731
              MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  788
                ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  789   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEA  841
             +      +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE+
Sbjct  766   DESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  842   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  877
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  878   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  937
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  938   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  997
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGF  FT++LNCY+++  +G T C+A
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  998   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1056
             +LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1057  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1115
              V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1116  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1173
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1182

Query  1174  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1233
             + APFY DG W+N L+S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1242

Query  1234  MNDFYGRDS--EDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1291
             +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1243  LNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1302

Query  1292  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1326
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1303  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

26) yghJ in NC_012759


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1004 bits (3807),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 625/1295 (49%), Positives = 912/1295 (71%), Gaps = 79/1295 (6%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF+ G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  612   SDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  671
             ++    ++    + VGTN+  VYFK  GQ  G  A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVK  648

Query  672   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  731
              MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  788
                ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  789   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEA  841
             +      +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE+
Sbjct  766   DESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  842   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  877
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  878   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  937
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  938   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  997
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGF  FT++LNCY+++  +G T C+A
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  998   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1056
             +LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1057  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1115
              V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1116  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1173
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1182

Query  1174  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1233
             + APFY DG W+N L+S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1242

Query  1234  MNDFYGRDS--EDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1291
             +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1243  LNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1302

Query  1292  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1326
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1303  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

27) EcDH1_0723 in NC_017625


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1004 bits (3807),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 625/1295 (49%), Positives = 912/1295 (71%), Gaps = 79/1295 (6%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF+ G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  612   SDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  671
             ++    ++    + VGTN+  VYFK  GQ  G  A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVK  648

Query  672   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  731
              MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  788
                ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  789   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEA  841
             +      +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE+
Sbjct  766   DESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  842   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  877
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  878   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  937
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  938   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  997
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGF  FT++LNCY+++  +G T C+A
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  998   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1056
             +LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1057  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1115
              V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1116  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1173
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1182

Query  1174  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1233
             + APFY DG W+N L+S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1242

Query  1234  MNDFYGRDS--EDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1291
             +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1243  LNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1302

Query  1292  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1326
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1303  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

28) yghJ in NC_000913


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1004 bits (3807),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 625/1295 (49%), Positives = 912/1295 (71%), Gaps = 79/1295 (6%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF+ G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  612   SDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  671
             ++    ++    + VGTN+  VYFK  GQ  G  A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVK  648

Query  672   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  731
              MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  788
                ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  789   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEA  841
             +      +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE+
Sbjct  766   DESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  842   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  877
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  878   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  937
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  938   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  997
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGF  FT++LNCY+++  +G T C+A
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  998   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1056
             +LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1057  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1115
              V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1116  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1173
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1182

Query  1174  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1233
             + APFY DG W+N L+S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1242

Query  1234  MNDFYGRDS--EDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1291
             +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1243  LNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1302

Query  1292  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1326
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1303  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

29) yghJ in NC_007779


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1004 bits (3807),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 625/1295 (49%), Positives = 912/1295 (71%), Gaps = 79/1295 (6%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF+ G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  612   SDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  671
             ++    ++    + VGTN+  VYFK  GQ  G  A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVK  648

Query  672   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  731
              MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  788
                ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  789   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEA  841
             +      +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE+
Sbjct  766   DESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  842   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  877
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  878   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  937
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  938   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  997
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGF  FT++LNCY+++  +G T C+A
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  998   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1056
             +LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1057  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1115
              V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1116  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1173
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1182

Query  1174  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1233
             + APFY DG W+N L+S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1242

Query  1234  MNDFYGRDS--EDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1291
             +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1243  LNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1302

Query  1292  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1326
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1303  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

30) yghJ in NC_017663


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1004 bits (3806),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 625/1295 (49%), Positives = 912/1295 (71%), Gaps = 79/1295 (6%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQIVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF+ G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  612   SDDKWKPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQ  671
             ++    ++    + VGTN+  VYFK  GQ  G  A F++++ F+    ++L+S+ DLD +
Sbjct  592   TGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVK  648

Query  672   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  731
              MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  788
                ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  789   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEA  841
             +      +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE+
Sbjct  766   DESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  842   DH---------------KTE---DSLKAAKEKIFAAF------PGLKECTNPAYHYEVNC  877
             +H               K E    SL  AK+K++ AF       +  EC N+ +HYE+NC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  878   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  937
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  938   ERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDELGFKTFTEFLNCYANDAYAGGTKCSA  997
              RL+SVDL+R+YQNMSVWLWND  YRY++ ++DELGF  FT++LNCY+++  +G T C+A
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  998   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1056
             +LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1057  AVSEEGQNVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADD  1115
              V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1116  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGV  1173
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1182

Query  1174  VKAPFYKDGAWKNDLNSPAPLGELESDAFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1233
             + APFY DG W+N L+S AP+GE+ SD+F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1242

Query  1234  MNDFYGRDS--EDGKHRMFTYKNLPGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1291
             +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1243  LNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1302

Query  1292  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1326
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1303  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

31) yghJ in NC_011993


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1002 bits (3797),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 623/1294 (49%), Positives = 906/1294 (71%), Gaps = 76/1294 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  152
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  271
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  323
             II S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  437
             +I+LSL+NG   LD GD +  ++P EF+ QF  G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  438   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  492
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  493   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  552
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  553   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  612
             LG++G GK+MV+GN++YNS+L CPNG+SWGGGV+ +G C+LS+DSDDM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGVK-NGTCSLSSDSDDMANFFSNVIRYLT  592

Query  613   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  672
                 +     I  VGTN+ +VYFK +GQ +G  A F ++  F+  T +QLTS+ DL+   
Sbjct  593   GSTSNDFNDVI--VGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDVKT  649

Query  673   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  732
             +PL+I+N+++Y  +    PY +PL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  733   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  789
               ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R  GIWV ERY+A D+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  790   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASWQEEVEG-KQVTRYAFIDEAE  843
               +     PY I ++ G V WKY  +N+PDDKPKLEVASW E   G K +T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  844   -----------YTT-------EESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  879
                        Y         + SL  AK K+++ F       +  EC +S +HYEINCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  880   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  939
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI  LYQHE YFRTKG  G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  940   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  999
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGF  FT++LNCY+++  +G T C+A+
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  1000  LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1058
             LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1059  VSVGGEEVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADDL  1117
             V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1118  TGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGVV  1175
             TGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGTI  1183

Query  1176  KAPFYKDGAWKNDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLDQFAKDLDTFASSM  1235
              APFY DG W+N L+S AP+GE+ S +F++T+PK NLNA  Y GG++QFAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1236  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1293
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1294  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNV  1327
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

32) NRG857_14720 in NC_017634


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1002 bits (3797),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 623/1294 (49%), Positives = 906/1294 (71%), Gaps = 76/1294 (5%)

Query  50    LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  108
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  109   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  167
             +SL  A+E   S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  168   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  227
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  228   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  279
             II S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  280   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  339
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  340   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  393
             +I+LSL+NG   LD GD +  ++P EF+ QF  G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  394   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  448
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  449   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  508
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  509   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  568
             LG++G GK+MV+GN++YNS+L CPNG+SWGGGV+ +G C+LS+DSDDM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGVK-NGTCSLSSDSDDMANFFSNVIRYLT  592

Query  569   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  628
                 +     I  VGTN+ +VYFK +GQ +G  A F ++  F+  T +QLTS+ DL+   
Sbjct  593   GSTSNDFNDVI--VGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDVKT  649

Query  629   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  688
             +PL+I+N+++Y  +    PY +PL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  689   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  745
               ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R  GIWV ERY+A D+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  746   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASWQEEVEG-KQVTRYAFIDEAE  799
               +     PY I ++ G V WKY  +N+PDDKPKLEVASW E   G K +T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  800   -----------YTT-------EESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  835
                        Y         + SL  AK K+++ F       +  EC +S +HYEINCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  836   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  895
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI  LYQHE YFRTKG  G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  896   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  955
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGF  FT++LNCY+++  +G T C+A+
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  956   LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1014
             LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1015  VSVGGEEVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNANV-PVTVTVALADDL  1073
             V+        T+ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1074  TGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKGNSSTNESASFTFTGVV  1131
             TGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY +G +S  +   +TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGTI  1183

Query  1132  KAPFYKDGAWKNDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLDQFAKDLDTFASSM  1191
              APFY DG W+N L+S AP+GE+ S +F++T+PK NLNA  Y GG++QFAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1192  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1249
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1250  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNV  1283
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

33) EcE24377A_3432 in NC_009801


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score = 1000 bits (3789),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 628/1296 (49%), Positives = 910/1296 (71%), Gaps = 80/1296 (6%)

Query  79    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  138
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  139   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  197
              +SL  A+E   S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  198   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  257
             + ++F   + E + N+   DK PSTH + + P+ T+GT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  258   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  309
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  310   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  369
             ELGS R+NK+ + ++ELG + +G N + LIHRY++ +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  370   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  422
             E+I+LSL+NG     +G+G   + +P EF+ QF  G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK  414

Query  423   WFSLTTRNVNDGKIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  477
                 ++ + + ++IQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  478   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  537
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  538   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  597
             ISLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRY  590

Query  598   LSDDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDP  657
             L++   T++    + VGTN+  VYFK  GQ  G  A F++++ F+    ++L+S+ DLD 
Sbjct  591   LTGS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDV  647

Query  658   QEMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVM  717
             + MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME ++
Sbjct  648   KTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETII  707

Query  718   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQRRSTPIWVYERYPAV  774
             +   ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R +R   IWV ERY+AV
Sbjct  708   NT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAV  764

Query  775   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFIDE  827
             D+ +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFIDE
Sbjct  765   DDESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDE  823

Query  828   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  863
             ++H                PE    SL+ AK+++LDAF       +   C +S++HYE+N
Sbjct  824   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEIN  883

Query  864   CLEYRPGTDVPVTGGMYVPQYTQLDLSADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQ  923
             CLEYRPG  +P+TGG+YVP+YT++ L+   A+AM++AA+LGTNI  LYQHE YFRT+G+ 
Sbjct  884   CLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKF  943

Query  924   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  982
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGF  FT++LNCYT+N   G T C+
Sbjct  944   GTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCP  1003

Query  983   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1041
             AELK  LI+  MIYGE S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YP
Sbjct  1004  AELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYP  1063

Query  1042  GVVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIE-SKatvpvtvtvalaD  1100
             G V T        +++ +  + WFAGN  +TG WA A+Q  S+  S  T PVT+T+AL D
Sbjct  1064  GEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVD  1123

Query  1101  DLTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTG  1158
             DLTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G
Sbjct  1124  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSG  1181

Query  1159  VVKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFAS  1218
              + APFY DGKW++ L+S AP+GE+ S +F++T+PK NLNA  Y GG+EQFA+DLD F++
Sbjct  1182  TIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1241

Query  1219  SMNDFYGRDS--EDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMnssfspnstt  1276
              +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +
Sbjct  1242  DLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1301

Query  1277  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1312
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1302  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

34) yghJ in NC_011751


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  998 bits (3783),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 617/1294 (48%), Positives = 910/1294 (71%), Gaps = 76/1294 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFTPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAASDNKKSNAVSLVTSSNSCPADTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT-LDEGEQVVNL-PNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  437
             +I+LSL+NG   LD G+   ++ P EF+ QF  G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  438   SLTTRNVNDGQIQGVINKLWGVDTSY-----KSVSKFHVFHDSTNFYGSTGNARGQAVVN  492
               ++ + + +QIQ++INKLWG   +      K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  493   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPFIS  552
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  553   LGQVGKGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLS  612
             LG++GKGK+MV+GN++YNS+L CPNG+SW GGV KNG C+ +SDS+DM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYLT  592

Query  613   NDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQK  672
                 T++    + VGTN+  VYFK  GQ  G  A+F +++ F+    ++L+S+ DLD + 
Sbjct  593   GS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVKT  649

Query  673   MPLLILNGFEYVTQVGGDPYAVPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVMSN  732
             MPL+I+N+++Y  +    PY +PL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  733   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPVVEG  789
               ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R  GIWV ERY+ V++
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  790   E------LPYTIDSKTGKVTWKYQIDNKPDKKPKLEVASWQEEVDG-KQVTQFAFIDEAD  842
             E      LPY I S  G V WKY ++N+PD KPKLEVASW E   G K +T++AFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  843   H------------------KTTESLDAAKKKILEKFK------GLEECKDSTYHYEINCL  878
             H                      SL  AK+K+L+ FK      +  EC +S +HYEINCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  879   EYRPGTNVPVTGGMYVPRYTQLNLSADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  938
             EYRPG ++P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI  LYQHE YFRT+G+ G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  939   RLSSVDLERLYQNMSVWLWNEIEYSYDSSKEDELGFKTFTEFLNCYANDAYTGGTQCSDE  998
             RL+SVDL+R+YQNMSVWLWN+++Y YD  + DELGF  FT++LNCY+++   G T C+ E
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  999   LKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1058
             LK  L++  MIYGEKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1059  VSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEss-asvpvtvtvaLADDL  1117
             V++       T+ + +N + WFAGN  +TG WA A++  ++  S  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1118  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1175
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1183

Query  1176  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1235
              APFY DG W+N+L+S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1236  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1293
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1294  ttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1327
             T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

35) acfD in NC_017626


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  997 bits (3779),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 615/1296 (48%), Positives = 908/1296 (71%), Gaps = 78/1296 (6%)

Query  94    LTLGGSQRITGAT-CNGESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  152
             +TL+G+ ++ ++  CN++ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  153   SFSLEDAQELAASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDL  211
              +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  212   APEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPT  271
             + ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  272   EIILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTF  323
             +II S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  324   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAAYPNVIN  383
             ELGS R+NK+ + ++ELG + +G N + LIHRY++ + +    +PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANID-DSKLIIPDKVTQIFSLYPNVIN  355

Query  384   EIINLSLSNGE-ALSEGDQTFERT-NEFLEQFESGQAKEIDTAICD----SLGGCNSQRW  437
             E+I+LSL+NG+  L  GD   +    EFL QF+ G A  ID +I       + +  +++ 
Sbjct  356   EVISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  438   FSLTARNVNEGQIQGVINKLWGVDKDY-----KSVTKFHVFHDSTNFYGSTGNARGQAVV  492
                +A + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  493   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  552
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  553   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYL  612
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV KNG C+ +SDS+DM +F  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  613   SNDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQ  672
             +    T++    + VGTN+  VYFK  GQ  G  A+F +++ F+    ++L+S+ DLD +
Sbjct  592   TGS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVK  648

Query  673   KMPLLILNGFEYVTQVGGDPYAVPLRADTSKPKLSQQDVTDLIAYLNKGGSVLIMENVMS  732
              MPL+I+N+++Y  +    PY +PL AD   PKLS+ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  733   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPVVE  789
                ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R  GIWV ERY+ V+
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  790   GE------LPYTIDSKTGKVTWKYQIDNKPDKKPKLEVASWQEEVDG-KQVTQFAFIDEA  842
             +E      LPY I S  G V WKY ++N+PD KPKLEVASW E   G K +T++AFIDE+
Sbjct  766   DESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  843   DH------------------KTTESLDAAKKKILEKFK------GLEECKDSTYHYEINC  878
             +H                      SL  AK+K+L+ FK      +  EC +S +HYEINC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  879   LEYRPGTNVPATGGMYVPRYTQLNLSADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  938
             LEYRPG ++P TGG+YVPRYT+++L+   A+AMV+AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  939   ERLSSVDLERLYQNMSVWLWNEIEYSYDSSKEDELGFKTFTEFLNCYANDAYTGGTQCSD  998
              RL+SVDL+R+YQNMSVWLWN+++Y YD  + DELGF  FT++LNCY+++   G T C+ 
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  999   ELKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1058
             ELK  L++  MIYGEKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1059  AVSEEGQEVTESISLYSNPTKWFAGNMQSTGLWAPAQKEVTIKSNADV-PVTVTVALADD  1117
              V+        ++ + +N + WFAGN  +TG WA A++  ++  +++  PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1118  LTGREKHEVALNRPPKVTKTYELKANGE--VKFTVPYGGLIYIKGNSKENNKSASFTFTG  1175
             LTGREKHE++L+RPP+++K++ + +++     FTVPYGGLIY +G + ++ K   +TF+G
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVK---LTFSG  1181

Query  1176  VVKAPFYKNGAWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFAS  1235
              + APFY +G W+N+L+S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++
Sbjct  1182  TIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1241

Query  1236  SMNDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnstt  1293
              +NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +
Sbjct  1242  DLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1301

Query  1294  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1329
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1302  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

36) EcHS_A3142 in NC_009800


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  995 bits (3769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 620/1295 (48%), Positives = 908/1295 (71%), Gaps = 80/1295 (6%)

Query  79    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  137
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  138   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  196
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  197   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  256
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  257   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  308
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  309   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  368
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  369   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  421
             +I+LSL+NG     +G+G   + +P EF+ QF+ G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  422   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  476
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  477   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPFI  536
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  537   SLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  596
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  597   SNDRWLPDAKSNMTVGTNLDTVYFKKHGQVTGNSAAFGFHPDFAGISVEHLSSYGDLDPQ  656
             +     ++  +++ VGTN+  VYFK  GQ  G  A F +++ F+    ++L+S+ DLD +
Sbjct  592   TGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVK  648

Query  657   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVMS  716
              MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  717   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAVD  773
                ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R   IWV ERY+AVD
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  774   GKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFIDEA  826
             + +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFIDE+
Sbjct  766   DESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  827   DH--------------KTPE----SLAAAKKRILDAF------PGLEECKDSDYHYEVNC  862
             +H                PE    SL+ AK+++LDAF       +  EC +S++HYE+NC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  863   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  922
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  923   ERLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANNAYDGGTQCSA  982
              RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGF  FT++LNCY++N  +G T C+A
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  983   ELKQSLIDNKMIYGE--GSKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1040
             ELK+ LI+  MIYGE  GS AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1041  AVSAEGEEVTETINLYSNPTKWFAGNMQSTGLWAPAQQEVSIK-SNAKVPVTVTVALADD  1099
              V++       T+++ +N + WFAGN  +TG WA A+Q  S+  S    PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1100  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKSDSKEEKSANFTFTGV  1157
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY ++++ ++   ++TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQ--VKLTFSGT  1182

Query  1158  VKAPFYKDGKWKNDLKSPAPLGELESASFVYTTPKKNLEASNYKGGLKQFAEDLDTFASS  1217
             + APFY DGKW+N L S AP+GE+ S +F++T+PK NL+A  Y GG+ QFA DLD F++ 
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1242

Query  1218  MNDFYGRDG--ESGKHRMFTYEALTGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1275
             +NDFY+RD   +++K+R  T  ++  ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1243  LNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1302

Query  1276  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1310
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1303  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

37) EcSMS35_3251 in NC_010498


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  994 bits (3766),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 619/1295 (48%), Positives = 908/1295 (71%), Gaps = 80/1295 (6%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  323
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPEDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++P+ V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF+ G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  612   SNDRWLPDAKSNMTVGTNLDTVYFKKHGQVTGNSAAFGFHPDFAGISVEHLSSYGDLDPQ  671
             +     ++  +++ VGTN+  VYFK  GQ  G  A F +++ F+    ++L+S+ DLD +
Sbjct  592   TGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVK  648

Query  672   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVMS  731
              MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAVD  788
                ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R   IWV ERY+AVD
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  789   GKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFIDEA  841
             + +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFIDE+
Sbjct  766   DESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  842   DH--------------KTPE----SLAAAKKRILDAF------PGLEECKDSDYHYEVNC  877
             +H                PE    SL+ AK+++LDAF       +  EC +S++HYE+NC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  878   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  937
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  938   ERLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANNAYDGGTQCSA  997
              RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGF  FT++LNCY++N  +G T C+A
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  998   ELKQSLIDNKMIYGE--GSKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1055
             ELK+ LI+  MIYGE  GS AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1056  AVSAEGEEVTETINLYSNPTKWFAGNMQSTGLWAPAQQEVSIK-SNAKVPVTVTVALADD  1114
              V++       T+++ +N + WFAGN  +TG WA A+Q  S+  S    PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1115  LTGREKHEVALNRPPRVTKTYSL--DASGTVKFKVPYGGLIYIKSDSKEEKSANFTFTGV  1172
             LTGREKHE++L+RPPR++K++ +  D++    F VPYGGLIY ++++ ++   ++TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQ--VKLTFSGT  1182

Query  1173  VKAPFYKDGKWKNDLKSPAPLGELESASFVYTTPKKNLEASNYKGGLKQFAEDLDTFASS  1232
             + APFY DGKW+N L S AP+GE+ S +F++T+PK NL+A  Y GG+ QFA DLD F++ 
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1242

Query  1233  MNDFYGRDG--ESGKHRMFTYEALTGHKHRFTNDVQISIGDAHSGYPVMnssfspnsttl  1290
             +NDFY+RD   +++K+R  T  ++  ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1243  LNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1302

Query  1291  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1325
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1303  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

38) O3M_04130 in NC_018650


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  993 bits (3762),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 627/1296 (49%), Positives = 907/1296 (70%), Gaps = 80/1296 (6%)

Query  50    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  109
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  110   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  168
              +SL  A+E   S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  169   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  228
             + ++F   + E + N+   DK PSTH + + P+ T+GT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  229   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  280
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  281   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  340
             ELGS R+NK+ + ++ELG + +G N + LIHRY++ +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  341   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  393
             E+I+LSL+NG     +G+G   + +P EF+ QF  G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK  414

Query  394   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  448
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  449   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  508
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  509   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  568
             ISLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRY  590

Query  569   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  628
             L+     ++  + + VGTN+  VYFK  GQ +G  A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDV  647

Query  629   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  688
               +PL+I+N+++Y  +  + PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME ++
Sbjct  648   KTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETII  707

Query  689   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  745
             +   ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R   IWV ERY+AV
Sbjct  708   NT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAV  764

Query  746   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFIDE  798
             D+ +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFIDE
Sbjct  765   DDESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDE  823

Query  799   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  834
             ++H                PE    SL+ AK+++LDAF       +   C +S++HYE+N
Sbjct  824   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEIN  883

Query  835   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGLQ  894
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI  LYQHE YFRT+G  
Sbjct  884   CLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKF  943

Query  895   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  953
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGF  FT++LNCYT+N   G T C+
Sbjct  944   GTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCP  1003

Query  954   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1012
             AELK  LI+  MIYGE S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YP
Sbjct  1004  AELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYP  1063

Query  1013  GVVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIE-SKatvpvtvtvalaD  1071
             G V T        +++ +  + WFAGN  +TG WA A+Q  S+  S  T PVT+T+AL D
Sbjct  1064  GEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVD  1123

Query  1072  DLTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTG  1129
             DLTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G
Sbjct  1124  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSG  1181

Query  1130  VVKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFAS  1189
              + APFY DGKW++ L+S AP+GE+ S +F++T+PK NLNA  Y GG+EQFA+DLD F++
Sbjct  1182  TIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1241

Query  1190  SMNDFYGRDS--EDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMnssfspnstt  1247
              +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +
Sbjct  1242  DLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1301

Query  1248  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1283
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1302  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

39) O3O_21560 in NC_018661


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  993 bits (3762),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 627/1296 (49%), Positives = 907/1296 (70%), Gaps = 80/1296 (6%)

Query  50    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  109
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  110   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  168
              +SL  A+E   S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  169   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  228
             + ++F   + E + N+   DK PSTH + + P+ T+GT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  229   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  280
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  281   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  340
             ELGS R+NK+ + ++ELG + +G N + LIHRY++ +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  341   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  393
             E+I+LSL+NG     +G+G   + +P EF+ QF  G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK  414

Query  394   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  448
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  449   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  508
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  509   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  568
             ISLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRY  590

Query  569   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  628
             L+     ++  + + VGTN+  VYFK  GQ +G  A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDV  647

Query  629   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  688
               +PL+I+N+++Y  +  + PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME ++
Sbjct  648   KTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETII  707

Query  689   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  745
             +   ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R   IWV ERY+AV
Sbjct  708   NT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAV  764

Query  746   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFIDE  798
             D+ +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFIDE
Sbjct  765   DDESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDE  823

Query  799   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  834
             ++H                PE    SL+ AK+++LDAF       +   C +S++HYE+N
Sbjct  824   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEIN  883

Query  835   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGLQ  894
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI  LYQHE YFRT+G  
Sbjct  884   CLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKF  943

Query  895   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  953
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGF  FT++LNCYT+N   G T C+
Sbjct  944   GTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCP  1003

Query  954   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1012
             AELK  LI+  MIYGE S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YP
Sbjct  1004  AELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYP  1063

Query  1013  GVVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIE-SKatvpvtvtvalaD  1071
             G V T        +++ +  + WFAGN  +TG WA A+Q  S+  S  T PVT+T+AL D
Sbjct  1064  GEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVD  1123

Query  1072  DLTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTG  1129
             DLTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G
Sbjct  1124  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSG  1181

Query  1130  VVKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFAS  1189
              + APFY DGKW++ L+S AP+GE+ S +F++T+PK NLNA  Y GG+EQFA+DLD F++
Sbjct  1182  TIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1241

Query  1190  SMNDFYGRDS--EDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMnssfspnstt  1247
              +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +
Sbjct  1242  DLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1301

Query  1248  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1283
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1302  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

40) O3K_04095 in NC_018658


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  993 bits (3762),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 627/1296 (49%), Positives = 907/1296 (70%), Gaps = 80/1296 (6%)

Query  50    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  109
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  110   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  168
              +SL  A+E   S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  169   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  228
             + ++F   + E + N+   DK PSTH + + P+ T+GT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  229   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  280
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  281   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  340
             ELGS R+NK+ + ++ELG + +G N + LIHRY++ +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  341   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  393
             E+I+LSL+NG     +G+G   + +P EF+ QF  G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK  414

Query  394   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  448
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  449   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  508
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  509   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  568
             ISLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRY  590

Query  569   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  628
             L+     ++  + + VGTN+  VYFK  GQ +G  A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDV  647

Query  629   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  688
               +PL+I+N+++Y  +  + PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME ++
Sbjct  648   KTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETII  707

Query  689   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  745
             +   ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R   IWV ERY+AV
Sbjct  708   NT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAV  764

Query  746   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFIDE  798
             D+ +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFIDE
Sbjct  765   DDESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDE  823

Query  799   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  834
             ++H                PE    SL+ AK+++LDAF       +   C +S++HYE+N
Sbjct  824   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEIN  883

Query  835   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGLQ  894
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI  LYQHE YFRT+G  
Sbjct  884   CLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKF  943

Query  895   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  953
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGF  FT++LNCYT+N   G T C+
Sbjct  944   GTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCP  1003

Query  954   AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1012
             AELK  LI+  MIYGE S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YP
Sbjct  1004  AELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYP  1063

Query  1013  GVVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIE-SKatvpvtvtvalaD  1071
             G V T        +++ +  + WFAGN  +TG WA A+Q  S+  S  T PVT+T+AL D
Sbjct  1064  GEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVD  1123

Query  1072  DLTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTG  1129
             DLTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G
Sbjct  1124  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSG  1181

Query  1130  VVKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFAS  1189
              + APFY DGKW++ L+S AP+GE+ S +F++T+PK NLNA  Y GG+EQFA+DLD F++
Sbjct  1182  TIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1241

Query  1190  SMNDFYGRDS--EDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMnssfspnstt  1247
              +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +
Sbjct  1242  DLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1301

Query  1248  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1283
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1302  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

41) yghJ in NC_011748


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  992 bits (3760),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 627/1296 (49%), Positives = 907/1296 (70%), Gaps = 80/1296 (6%)

Query  100   LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  159
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  160   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  218
              +SL  A+E   S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  219   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPT  278
             + ++F   + E + N+   DK PSTH + + P+ T+GT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  279   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  330
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  331   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  390
             ELGS R+NK+ + ++ELG + +G N + LIHRY++ +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  391   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEAR  443
             E+I+LSL+NG     +G+G   + +P EF+ QF  G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK  414

Query  444   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  498
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  499   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNLPF  558
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  559   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  618
             ISLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRY  590

Query  619   LSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  678
             L+     ++  + + VGTN+  VYFK  GQ +G  A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDV  647

Query  679   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  738
               +PL+I+N+++Y  +  + PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME ++
Sbjct  648   KTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETII  707

Query  739   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  795
             +   ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R   IWV ERY+AV
Sbjct  708   NT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAV  764

Query  796   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFIDE  848
             D+ +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFIDE
Sbjct  765   DDESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDE  823

Query  849   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  884
             ++H                PE    SL+ AK+++LDAF       +   C +S++HYE+N
Sbjct  824   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEIN  883

Query  885   CLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQRLYQHELYFRTNGLQ  944
             CLEYRPG ++P+TGG+YVP+YT++ LG   A+AM++AA+LGTNI  LYQHE YFRT+G  
Sbjct  884   CLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKF  943

Query  945   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  1003
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGF  FT++LNCYT+N   G T C+
Sbjct  944   GTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCP  1003

Query  1004  AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1062
             AELK  LI+  MIYGE S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YP
Sbjct  1004  AELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYP  1063

Query  1063  GVVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIE-SKatvpvtvtvalaD  1121
             G V T        +++ +  + WFAGN  +TG WA A+Q  S+  S  T PVT+T+AL D
Sbjct  1064  GEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVD  1123

Query  1122  DLTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTG  1179
             DLTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G
Sbjct  1124  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSG  1181

Query  1180  VVKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFAS  1239
              + APFY DGKW++ L+S AP+GE+ S +F++T+PK NLNA  Y GG+EQFA+DLD F++
Sbjct  1182  TIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1241

Query  1240  SMNDFYGRDS--EDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMnssfspnstt  1297
              +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +
Sbjct  1242  DLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1301

Query  1298  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1333
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1302  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

42) yghJ in NC_008563


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  992 bits (3759),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 621/1294 (48%), Positives = 909/1294 (71%), Gaps = 76/1294 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  152
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  271
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  323
             II S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  437
             +I+LSL+NG   LD GD +  ++P EF+ QF  G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  438   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  492
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  493   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  552
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  553   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  612
             LG++G GK+MV+GN++YNS+L CPNG+SWGGGV+ +G C+LS+DSDDM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGVK-NGTCSLSSDSDDMANFFSNVIRYLT  592

Query  613   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  672
                 +     I  VGTN+ +VYFK +GQ +G  A F ++  F+  T +QLTS+ DL+   
Sbjct  593   GSTSNDFNDVI--VGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDVKT  649

Query  673   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  732
             +PL+I+N+++Y  +    PY +PL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  733   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  789
               ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R  GIWV ERY+A D+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  790   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASWQEEVEG-KQVTRYAFIDEAE  843
               +     PY I ++ G V WKY  +N+PDDKPKLEVASW E   G K +T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  844   -----------YTT-------EESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  879
                        Y         + SL  AK K+++ F       +  EC +S +HYEINCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  880   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  939
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI  LYQHE YFRTKG  G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  940   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  999
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGF  FT++LNCY+++  +G T C+A+
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  1000  LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGS  1058
             LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1059  VSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPAQQDVTIKss-asvpvtvtvaLADDL  1117
             V+++  +    + + +N + WFAGN  +TG WA A+Q  ++  S  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1118  TGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGVV  1175
             TGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGTI  1183

Query  1176  KAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1235
              APFY DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1236  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1293
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1294  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNV  1327
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

43) yghJ in NC_012971


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  992 bits (3760),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 611/1294 (48%), Positives = 919/1294 (72%), Gaps = 77/1294 (5%)

Query  92    LTLGGSQRVTGAT-CNGETSDGFTFTPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDNKKSNAVSLVTSSNSCPADTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPSE  269
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y P++
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  321
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGAT-LDEGEQVVNL-PNEFIEQFKTGQSKEIDTAICA----KTDGCNEARWF  435
             +I+LSL+NG   LD G+   ++ P EF+ QF  G +  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTTRNVNDGQIQGVINKLWGVDTSY-----KSVSKFHVFHDSTNFYGSTGNARGQAVVN  490
               ++ + + +QIQ++INKLWG   +      K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLSGDSDDMKHFMQNVLRYLS  610
             LG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+LS+DSDDM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYLT  592

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
             +   T++    + VGTN+  VYFK  GQ  G  A+F +++ F+    ++L+S+ DLD + 
Sbjct  593   GS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVKT  649

Query  671   MPLLILNGFEYVTQVGGDPYAVPLRADTSKPKLSQQDVTDLIAYLNKGGSVLIMENVMSN  730
             MPL+I+N+++Y  +    PY +PL AD   PKLS+ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRERQRRADGIWVYERYPVVEG  787
               ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R +R +GIWV ERY+ V++
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  788   ------ALPYTINSETGEVTWKYQIDNKPDKKPKLEVASWQEEVDGEQ-VTQYAFIDEAD  840
                   +LPY I+S+ G V WKY ++N+PD KPKLEVASW E   G++ +T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  841   -----------YKT---PEL----LAAAKKRILDAF------PGLEECKDSDYHYEVNCL  876
                        Y+    PE+    L+ AK+++LDAF       +  EC +S++HYE+NCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  937   RLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANNAYSEGTQCSAD  996
             RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGF  FT++LNCY++N  +  T C+A+
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  997   LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1055
             LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1056  VSAEGEKVTESISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEst-asvpvtvtvaLADDL  1114
             V++       ++ + +N + WFAGN  +TG WA A++  ++  +  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1115  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1172
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1183

Query  1173  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFANDLDTFASSM  1232
              APFY DG W+N+L+S AP+GE+ SD+F++T+PK NL+A  + GG+ +FA+DLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1233  NDFYGRDG--ESGKHRMFTYKALTGHKHRFANDVQISIGDAHSGYPVMNSSFstnsttlp  1290
             NDFY+RD   +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1291  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNV  1324
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

44) yghJ in NC_012892


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  992 bits (3760),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 611/1294 (48%), Positives = 919/1294 (72%), Gaps = 77/1294 (5%)

Query  92    LTLGGSQRVTGAT-CNGETSDGFTFTPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDNKKSNAVSLVTSSNSCPADTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPSE  269
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y P++
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  321
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGAT-LDEGEQVVNL-PNEFIEQFKTGQSKEIDTAICA----KTDGCNEARWF  435
             +I+LSL+NG   LD G+   ++ P EF+ QF  G +  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTTRNVNDGQIQGVINKLWGVDTSY-----KSVSKFHVFHDSTNFYGSTGNARGQAVVN  490
               ++ + + +QIQ++INKLWG   +      K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLSGDSDDMKHFMQNVLRYLS  610
             LG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+LS+DSDDM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYLT  592

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
             +   T++    + VGTN+  VYFK  GQ  G  A+F +++ F+    ++L+S+ DLD + 
Sbjct  593   GS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVKT  649

Query  671   MPLLILNGFEYVTQVGGDPYAVPLRADTSKPKLSQQDVTDLIAYLNKGGSVLIMENVMSN  730
             MPL+I+N+++Y  +    PY +PL AD   PKLS+ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRERQRRADGIWVYERYPVVEG  787
               ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R +R +GIWV ERY+ V++
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  788   ------ALPYTINSETGEVTWKYQIDNKPDKKPKLEVASWQEEVDGEQ-VTQYAFIDEAD  840
                   +LPY I+S+ G V WKY ++N+PD KPKLEVASW E   G++ +T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  841   -----------YKT---PEL----LAAAKKRILDAF------PGLEECKDSDYHYEVNCL  876
                        Y+    PE+    L+ AK+++LDAF       +  EC +S++HYE+NCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  937   RLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANNAYSEGTQCSAD  996
             RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGF  FT++LNCY++N  +  T C+A+
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  997   LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1055
             LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1056  VSAEGEKVTESISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEst-asvpvtvtvaLADDL  1114
             V++       ++ + +N + WFAGN  +TG WA A++  ++  +  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1115  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1172
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1183

Query  1173  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFANDLDTFASSM  1232
              APFY DG W+N+L+S AP+GE+ SD+F++T+PK NL+A  + GG+ +FA+DLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1233  NDFYGRDG--ESGKHRMFTYKALTGHKHRFANDVQISIGDAHSGYPVMNSSFstnsttlp  1290
             NDFY+RD   +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1291  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNV  1324
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

45) yghJ in NC_012967


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  992 bits (3760),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 611/1294 (48%), Positives = 919/1294 (72%), Gaps = 77/1294 (5%)

Query  92    LTLGGSQRVTGAT-CNGETSDGFTFTPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDNKKSNAVSLVTSSNSCPADTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPSE  269
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y P++
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTFE  321
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGAT-LDEGEQVVNL-PNEFIEQFKTGQSKEIDTAICA----KTDGCNEARWF  435
             +I+LSL+NG   LD G+   ++ P EF+ QF  G +  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTTRNVNDGQIQGVINKLWGVDTSY-----KSVSKFHVFHDSTNFYGSTGNARGQAVVN  490
               ++ + + +QIQ++INKLWG   +      K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLSGDSDDMKHFMQNVLRYLS  610
             LG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+LS+DSDDM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYLT  592

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
             +   T++    + VGTN+  VYFK  GQ  G  A+F +++ F+    ++L+S+ DLD + 
Sbjct  593   GS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVKT  649

Query  671   MPLLILNGFEYVTQVGGDPYAVPLRADTSKPKLSQQDVTDLIAYLNKGGSVLIMENVMSN  730
             MPL+I+N+++Y  +    PY +PL AD   PKLS+ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRERQRRADGIWVYERYPVVEG  787
               ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R +R +GIWV ERY+ V++
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  788   ------ALPYTINSETGEVTWKYQIDNKPDKKPKLEVASWQEEVDGEQ-VTQYAFIDEAD  840
                   +LPY I+S+ G V WKY ++N+PD KPKLEVASW E   G++ +T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  841   -----------YKT---PEL----LAAAKKRILDAF------PGLEECKDSDYHYEVNCL  876
                        Y+    PE+    L+ AK+++LDAF       +  EC +S++HYE+NCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  937   RLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANNAYSEGTQCSAD  996
             RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGF  FT++LNCY++N  +  T C+A+
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  997   LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1055
             LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1056  VSAEGEKVTESISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEst-asvpvtvtvaLADDL  1114
             V++       ++ + +N + WFAGN  +TG WA A++  ++  +  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1115  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1172
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1183

Query  1173  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFANDLDTFASSM  1232
              APFY DG W+N+L+S AP+GE+ SD+F++T+PK NL+A  + GG+ +FA+DLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1233  NDFYGRDG--ESGKHRMFTYKALTGHKHRFANDVQISIGDAHSGYPVMNSSFstnsttlp  1290
             NDFY+RD   +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1291  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNV  1324
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

46) ECOK1_3385 in NC_017628


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  992 bits (3759),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 621/1294 (48%), Positives = 909/1294 (71%), Gaps = 76/1294 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  152
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  271
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  323
             II S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  437
             +I+LSL+NG   LD GD +  ++P EF+ QF  G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  438   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  492
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  493   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  552
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  553   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  612
             LG++G GK+MV+GN++YNS+L CPNG+SWGGGV+ +G C+LS+DSDDM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGVK-NGTCSLSSDSDDMANFFSNVIRYLT  592

Query  613   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  672
                 +     I  VGTN+ +VYFK +GQ +G  A F ++  F+  T +QLTS+ DL+   
Sbjct  593   GSTSNDFNDVI--VGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDVKT  649

Query  673   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  732
             +PL+I+N+++Y  +    PY +PL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  733   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  789
               ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R  GIWV ERY+A D+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  790   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASWQEEVEG-KQVTRYAFIDEAE  843
               +     PY I ++ G V WKY  +N+PDDKPKLEVASW E   G K +T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  844   -----------YTT-------EESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  879
                        Y         + SL  AK K+++ F       +  EC +S +HYEINCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  880   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  939
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI  LYQHE YFRTKG  G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  940   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  999
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGF  FT++LNCY+++  +G T C+A+
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  1000  LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGS  1058
             LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1059  VSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPAQQDVTIKss-asvpvtvtvaLADDL  1117
             V+++  +    + + +N + WFAGN  +TG WA A+Q  ++  S  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1118  TGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGVV  1175
             TGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGTI  1183

Query  1176  KAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1235
              APFY DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1236  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1293
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1294  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNV  1327
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

47) ECOPMV1_03270 in NC_022370


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  992 bits (3759),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 621/1294 (48%), Positives = 909/1294 (71%), Gaps = 76/1294 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  152
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  271
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  323
             II S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  437
             +I+LSL+NG   LD GD +  ++P EF+ QF  G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  438   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  492
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  493   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  552
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  553   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  612
             LG++G GK+MV+GN++YNS+L CPNG+SWGGGV+ +G C+LS+DSDDM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGVK-NGTCSLSSDSDDMANFFSNVIRYLT  592

Query  613   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  672
                 +     I  VGTN+ +VYFK +GQ +G  A F ++  F+  T +QLTS+ DL+   
Sbjct  593   GSTSNDFNDVI--VGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDVKT  649

Query  673   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  732
             +PL+I+N+++Y  +    PY +PL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  733   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  789
               ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R  GIWV ERY+A D+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  790   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASWQEEVEG-KQVTRYAFIDEAE  843
               +     PY I ++ G V WKY  +N+PDDKPKLEVASW E   G K +T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  844   -----------YTT-------EESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  879
                        Y         + SL  AK K+++ F       +  EC +S +HYEINCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  880   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  939
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI  LYQHE YFRTKG  G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  940   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  999
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGF  FT++LNCY+++  +G T C+A+
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  1000  LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGS  1058
             LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1059  VSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPAQQDVTIKss-asvpvtvtvaLADDL  1117
             V+++  +    + + +N + WFAGN  +TG WA A+Q  ++  S  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1118  TGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGVV  1175
             TGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGTI  1183

Query  1176  KAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1235
              APFY DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1236  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1293
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1294  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNV  1327
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

48) yghJ in NC_011742


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  992 bits (3760),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 621/1294 (48%), Positives = 909/1294 (71%), Gaps = 76/1294 (5%)

Query  100   LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  158
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  159   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  217
             +SL  A+E   S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  218   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  277
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  278   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  329
             II S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  330   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  389
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  390   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  443
             +I+LSL+NG   LD GD +  ++P EF+ QF  G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  444   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  498
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  499   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  558
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  559   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  618
             LG++G GK+MV+GN++YNS+L CPNG+SWGGGV+ +G C+LS+DSDDM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGVK-NGTCSLSSDSDDMANFFSNVIRYLT  592

Query  619   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  678
                 +     I  VGTN+ +VYFK +GQ +G  A F ++  F+  T +QLTS+ DL+   
Sbjct  593   GSTSNDFNDVI--VGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDVKT  649

Query  679   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  738
             +PL+I+N+++Y  +    PY +PL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  739   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  795
               ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R  GIWV ERY+A D+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  796   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASWQEEVEG-KQVTRYAFIDEAE  849
               +     PY I ++ G V WKY  +N+PDDKPKLEVASW E   G K +T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  850   -----------YTT-------EESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  885
                        Y         + SL  AK K+++ F       +  EC +S +HYEINCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  886   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  945
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI  LYQHE YFRTKG  G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  946   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  1005
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGF  FT++LNCY+++  +G T C+A+
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  1006  LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGS  1064
             LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1065  VSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPAQQDVTIKss-asvpvtvtvaLADDL  1123
             V+++  +    + + +N + WFAGN  +TG WA A+Q  ++  S  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1124  TGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGVV  1181
             TGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGTI  1183

Query  1182  KAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1241
              APFY DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1242  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1299
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1300  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNV  1333
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

49) UM146_01530 in NC_017632


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  992 bits (3761),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 621/1294 (48%), Positives = 909/1294 (71%), Gaps = 76/1294 (5%)

Query  50    LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  108
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  109   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  167
             +SL  A+E   S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  168   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  227
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  228   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  279
             II S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  280   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  339
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  340   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  393
             +I+LSL+NG   LD GD +  ++P EF+ QF  G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  394   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  448
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  449   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  508
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  509   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  568
             LG++G GK+MV+GN++YNS+L CPNG+SWGGGV+ +G C+LS+DSDDM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGVK-NGTCSLSSDSDDMANFFSNVIRYLT  592

Query  569   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  628
                 +     I  VGTN+ +VYFK +GQ +G  A F ++  F+  T +QLTS+ DL+   
Sbjct  593   GSTSNDFNDVI--VGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDVKT  649

Query  629   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  688
             +PL+I+N+++Y  +    PY +PL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  689   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  745
               ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R  GIWV ERY+A D+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  746   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASWQEEVEG-KQVTRYAFIDEAE  799
               +     PY I ++ G V WKY  +N+PDDKPKLEVASW E   G K +T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  800   -----------YTT-------EESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  835
                        Y         + SL  AK K+++ F       +  EC +S +HYEINCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  836   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  895
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI  LYQHE YFRTKG  G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  896   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  955
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGF  FT++LNCY+++  +G T C+A+
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  956   LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGS  1014
             LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1015  VSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPAQQDVTIKss-asvpvtvtvaLADDL  1073
             V+++  +    + + +N + WFAGN  +TG WA A+Q  ++  S  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1074  TGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGVV  1131
             TGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGTI  1183

Query  1132  KAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1191
              APFY DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1192  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1249
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1250  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNV  1283
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

50) yghJ in NC_007946


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  992 bits (3759),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 621/1294 (48%), Positives = 909/1294 (71%), Gaps = 76/1294 (5%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  152
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  271
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  323
             II S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  437
             +I+LSL+NG   LD GD +  ++P EF+ QF  G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  438   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  492
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  493   ISNSAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  552
             I+NSAFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  553   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  612
             LG++G GK+MV+GN++YNS+L CPNG+SWGGGV+ +G C+LS+DSDDM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGVK-NGTCSLSSDSDDMANFFSNVIRYLT  592

Query  613   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  672
                 +     I  VGTN+ +VYFK +GQ +G  A F ++  F+  T +QLTS+ DL+   
Sbjct  593   GSTSNDFNDVI--VGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDVKT  649

Query  673   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  732
             +PL+I+N+++Y  +    PY +PL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  733   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  789
               ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R  GIWV ERY+A D+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  790   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASWQEEVEG-KQVTRYAFIDEAE  843
               +     PY I ++ G V WKY  +N+PDDKPKLEVASW E   G K +T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  844   -----------YTT-------EESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  879
                        Y         + SL  AK K+++ F       +  EC +S +HYEINCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  880   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  939
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI  LYQHE YFRTKG  G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  940   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  999
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGF  FT++LNCY+++  +G T C+A+
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  1000  LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGS  1058
             LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1059  VSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPAQQDVTIKss-asvpvtvtvaLADDL  1117
             V+++  +    + + +N + WFAGN  +TG WA A+Q  ++  S  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1118  TGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGVV  1175
             TGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGTI  1183

Query  1176  KAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1235
              APFY DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1236  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1293
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1294  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNV  1327
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

51) yghJ in NC_011741


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  991 bits (3757),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 626/1296 (49%), Positives = 907/1296 (70%), Gaps = 80/1296 (6%)

Query  98    LTLGGSLRVTGDITCNDESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  157
             +TL+G+L+  + + CND+ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  158   SFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFDSLYKQ-IDL  216
              +SL  A+E   S  ++ N   L+ +M +   + +++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDL  176

Query  217   APEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPS  276
             + ++F   + E + N+   DK PSTH + + P+ T+GT ++LN++FVSANAE+   Y P+
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  277   EIILSEGRLVDSQGDGVVGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  328
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  329   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNHTRVVPDEVRKVFAEYPNVIN  388
             ELGS R+NK+ + ++ELG + +G N + LIHRY++ +++   ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  389   EIINLSLSNGAT---LGEGEQVVNLPNEFIEQFKTGQAKEIDTAICA----KNDGCNEAR  441
             E+I+LSL+NG     +G+G   + +P EF+ QF  G A  ID +I +    K ++    +
Sbjct  356   EVISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK  414

Query  442   WFSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAV  496
                 ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA 
Sbjct  415   ---KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAA  471

Query  497   VNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPF  556
             VNI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPF
Sbjct  472   VNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPF  531

Query  557   ISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRY  616
             ISLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RY
Sbjct  532   ISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRY  590

Query  617   LSNDRWLPDAKSSMTVGTNLETVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNP  676
             L+     ++  + + VGTN+  VYFK  GQ +G  A F ++  F+  T + +TS+ +L+ 
Sbjct  591   LTGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDV  647

Query  677   DEVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVM  736
               +PL+I+N+++Y  +  + PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME ++
Sbjct  648   KTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETII  707

Query  737   SNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAV  793
             +   ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R   IWV ERY+AV
Sbjct  708   NT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAV  764

Query  794   DGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFIDE  846
             D+ +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFIDE
Sbjct  765   DDESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDE  823

Query  847   ADH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVN  882
             ++H                PE    SL+ AK+++LDAF       +   C +S++HYE+N
Sbjct  824   SQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEIN  883

Query  883   CLEYRPGTDVPVTGGMYVPQYTQLDLSADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQ  942
             CLEYRPG  +P+TGG+YVP+YT++ L+   A+AM++AA+LGTNI  LYQHE YFRT+G+ 
Sbjct  884   CLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKF  943

Query  943   GERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCS  1001
             G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGF  FT++LNCYT+N   G T C+
Sbjct  944   GTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCP  1003

Query  1002  AELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYP  1060
             AELK  LI+  MIYGE S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YP
Sbjct  1004  AELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYP  1063

Query  1061  GVVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIE-SKatvpvtvtvalaD  1119
             G V T        +++ +  + WFAGN  +TG WA A+Q  S+  S  T PVT+T+AL D
Sbjct  1064  GEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVD  1123

Query  1120  DLTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTG  1177
             DLTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G
Sbjct  1124  DLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSG  1181

Query  1178  VVKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFAS  1237
              + APFY DGKW++ L+S AP+GE+ S +F++T+PK NLNA  Y GG+EQFA+DLD F++
Sbjct  1182  TIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSA  1241

Query  1238  SMNDFYGRDS--EDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMnssfspnstt  1295
              +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +
Sbjct  1242  DLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRS  1301

Query  1296  lpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1331
             L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1302  LNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

52) yghJ in NC_011745


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  987 bits (3739),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 619/1294 (48%), Positives = 906/1294 (71%), Gaps = 76/1294 (5%)

Query  100   LTLGGSQRVTGAT-CNGESSDGFTFTPGNTVSCVVGSTTIATFNTQSEAARSLRAVDKVS  158
             +TL+G+ +  ++  CN++ +  F ++  + V C + + +IATF +  +A ++ R  D   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  159   FSLEDAQELANSENKKTNAISLVTSSDSCPADAEQLCLTFSSVVDRARFEKLYKQ-IDLA  217
             +SL  A+E   S  ++ N   L+ +  +   +++++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  218   TDNFSKLVNEEVENNAATDKApsthtstvvpvttEGTKPDLNASFVSANAEQFYQYQPTE  277
              D+F   + E + N+   DK PSTH + + P  T GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  278   IILSEGQLVDSLGNGVAGVDYYTNSGRGVTD--------ENGKFSFSWGETISFGIDTFE  329
             II S G+L+DS G  + GV Y++N+ RG+T+        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  330   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  389
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  390   IINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARWF  443
             +I+LSL+NG   LD GD +  ++P EF+ QF  G A  ID +I +    K ++    +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  444   SLTTRNVNDGQIQGVINKLWGVDTNYQS-----VSKFHVFHDSTNFYGSTGNARGQAVVN  498
               ++ + + +QIQ++INKLWG     Q+     V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  499   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFIS  558
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  559   LGQVGEGKLMVIGNPHYNSILRCPNGYSWGGGVNSKGECTLSGDSDDMKHFMQNVLRYLS  618
             LG++G GK+MV+GN++YNS+L CPNG+SWGGGV+ +G C+LS+DSDDM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGVK-NGTCSLSSDSDDMANFFSNVIRYLT  592

Query  619   NDIWQPNTKSIMTVGTNLENVYFKKAGQVLGNSAPFAFHEDFTGITVKQLTSYGDLNPEE  678
                 +     I  VGTN+ +VYFK +GQ +G  A F ++  F+  T +QLTS+ DL+   
Sbjct  593   GSTSNDFNDVI--VGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDVKT  649

Query  679   IPLLILNGFEYVTQWSGDPYAVPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  738
             +PL+I+N+++Y  +    PY +PL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  739   LKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAADG  795
               ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R  GIWV ERY+A D+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  796   AQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASWQEEVEG-KQVTRYAFIDEAE  849
               +     PY I ++ G V WKY  +N+PDDKPKLEVASW E   G K +T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  850   -----------YTT-------EESLEAAKAKIFEKF------PGLQECKDSTYHYEINCL  885
                        Y         + SL  AK K+++ F       +  EC +S +HYEINCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  886   ERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKGE  945
             E RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI  LYQHE YFRTKG  G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  946   RLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSAD  1005
             RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGF  FT++LNCY+++  +G T C+A+
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  1006  LKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGS  1064
             LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1065  VSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPALQDVTIKss-asvpvtvtvaLADDL  1123
             V+++  +    + + +N + WFAGN  +TG WA A Q  ++  S  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1124  TGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGVV  1181
             TGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGTI  1183

Query  1182  KAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1241
              APFY DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1242  NDFYGRNET--SGNHRMFTYEALTGHKHRFANDVQISIGDAHSGYPVMNSSFstnsttlp  1299
             NDFY+R+E   ++++R  T  ++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1300  ttplnDWLIWHEVGHNAAETPLNVPGATEVANNV  1333
             T PLN WL+WHEVGHN+AE+P+NV GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

53) yghJ in NC_011750


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  985 bits (3732),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 618/1294 (48%), Positives = 908/1294 (71%), Gaps = 76/1294 (5%)

Query  98    LTLGGSQRVTGAT-CNGESSDGFTFTPGEDVTCVAGNTTIATFDTQSEAARSLRAVEKVS  156
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  157   FSLEDAQELAASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  215
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  216   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  275
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  276   IILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTFE  327
             II S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  328   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVINE  387
             LGS R+NK+ + ++ELG + +G N + LIHRY++ + +    +PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANID-DSKLIIPDKVTQIFSLYPNVINE  356

Query  388   IINLSLSNGE-ALSEGDQTFERT-NEFLEQFESGQAKEIDTAICD----SLGGCNSQRWF  441
             +I+LSL+NG+  L  GD   +    EFL QF+ G A  ID +I       + +  +++  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  442   SLTARNVNEGQIQGVINKLWGVDKDY-----KSVTKFHVFHDSTNFYGSTGNARGQAVVN  496
               +A + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  497   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  556
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  557   LGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLS  616
             LG++G GK+MV+GN++YNS+L CPNG+SW GGV KNG C+ +SDS+DM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYLT  592

Query  617   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  676
             +   T++    + VGTN+  VYFK  GQ  G  A+F +++ F+    ++L+S+ DLD + 
Sbjct  593   GS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVKT  649

Query  677   MPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  736
             MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  737   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVDG  793
               ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  794   ------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEAD  846
                   +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  847   H---------------KTE---DSLKAAKAKIFEKF------PGLKECKDPTYHYEVNCL  882
             H               K E    SL  AK K+++ F       +  EC ++ +HYE+NCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  883   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  942
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  943   RLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDE  1002
             RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGF  FT++LNCY+++   G T C+ E
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  1003  LKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1062
             LK  L++  MIYGEKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1063  VSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEss-asvpvtvtvaLADDL  1121
             V++       T+ + +N + WFAGN  +TG WA A++  ++  S  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1122  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1179
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1183

Query  1180  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1239
              APFY DG W+N+L+S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1240  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1297
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1298  ttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1331
             T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

54) yghJ in NC_017646


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  985 bits (3733),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 618/1294 (48%), Positives = 908/1294 (71%), Gaps = 76/1294 (5%)

Query  92    LTLGGSQRVTGAT-CNGESSDGFTFTPGEDVTCVAGNTTIATFDTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  269
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTFE  321
             II S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG + +G N + LIHRY++ + +    +PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANID-DSKLIIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGE-ALSEGDQTFERT-NEFLEQFESGQAKEIDTAICD----SLGGCNSQRWF  435
             +I+LSL+NG+  L  GD   +    EFL QF+ G A  ID +I       + +  +++  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTARNVNEGQIQGVINKLWGVDKDY-----KSVTKFHVFHDSTNFYGSTGNARGQAVVN  490
               +A + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLS  610
             LG++G GK+MV+GN++YNS+L CPNG+SW GGV KNG C+ +SDS+DM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYLT  592

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
             +   T++    + VGTN+  VYFK  GQ  G  A+F +++ F+    ++L+S+ DLD + 
Sbjct  593   GS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVKT  649

Query  671   MPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  730
             MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVDG  787
               ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  788   ------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEAD  840
                   +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  841   H---------------KTE---DSLKAAKAKIFEKF------PGLKECKDPTYHYEVNCL  876
             H               K E    SL  AK K+++ F       +  EC ++ +HYE+NCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  937   RLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDE  996
             RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGF  FT++LNCY+++   G T C+ E
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  997   LKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1056
             LK  L++  MIYGEKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1057  VSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEss-asvpvtvtvaLADDL  1115
             V++       T+ + +N + WFAGN  +TG WA A++  ++  S  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1116  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1173
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1183

Query  1174  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1233
              APFY DG W+N+L+S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1234  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1291
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1292  ttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1325
             T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

55) yghJ in NC_017631


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  983 bits (3727),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 617/1294 (48%), Positives = 908/1294 (71%), Gaps = 76/1294 (5%)

Query  92    LTLGGSQRVTGAT-CNGESSDGFTFTPGEDVTCVAGNTTIATFDTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  269
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTFE  321
             II S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG + +G N + LIHRY++ + +    +PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANID-DSKLIIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGE-ALSEGDQTFERT-NEFLEQFESGQAKEIDTAICD----SLGGCNSQRWF  435
             +I+LSL+NG+  L  GD   +    EFL QF+ G A  ID +I       + +  +++  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTARNVNEGQIQGVINKLWGVDKDY-----KSVTKFHVFHDSTNFYGSTGNARGQAVVN  490
               +A + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLS  610
             LG++G GK+MV+GN++YNS+L CPNG+SW GGV KNG C+ +SDS+DM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYLT  592

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
             +   T++    + VGTN+  VYFK  GQ  G  A+F +++ F+    ++L+S+ DLD + 
Sbjct  593   GS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVKT  649

Query  671   MPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  730
             MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVDG  787
               ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  788   ------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEAD  840
                   +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  841   H---------------KTE---DSLKAAKAKIFEKF------PGLKECKDPTYHYEVNCL  876
             H               K E    SL  AK K+++ F       +  EC ++ +HYE+NCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  937   RLSSVDLERLYQNVSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDE  996
             RL+SVDL+R+YQN+SVWLWN ++YRY++ + DELGF  FT++LNCY+++   G T C+ E
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  997   LKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1056
             LK  L++  MIYGEKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1057  VSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEss-asvpvtvtvaLADDL  1115
             V++       T+ + +N + WFAGN  +TG WA A++  ++  S  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1116  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1173
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1183

Query  1174  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1233
              APFY DG W+N+L+S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1234  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1291
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1292  ttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1325
             T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

56) yghJ in NC_017652


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  983 bits (3727),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 617/1294 (48%), Positives = 908/1294 (71%), Gaps = 76/1294 (5%)

Query  92    LTLGGSQRVTGAT-CNGESSDGFTFTPGEDVTCVAGNTTIATFDTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  269
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTFE  321
             II S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG + +G N + LIHRY++ + +    +PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANID-DSKLIIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGE-ALSEGDQTFERT-NEFLEQFESGQAKEIDTAICD----SLGGCNSQRWF  435
             +I+LSL+NG+  L  GD   +    EFL QF+ G A  ID +I       + +  +++  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTARNVNEGQIQGVINKLWGVDKDY-----KSVTKFHVFHDSTNFYGSTGNARGQAVVN  490
               +A + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLS  610
             LG++G GK+MV+GN++YNS+L CPNG+SW GGV KNG C+ +SDS+DM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYLT  592

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
             +   T++    + VGTN+  VYFK  GQ  G  A+F +++ F+    ++L+S+ DLD + 
Sbjct  593   GS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVKT  649

Query  671   MPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  730
             MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVDG  787
               ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  788   ------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEAD  840
                   +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  841   H---------------KTE---DSLKAAKAKIFEKF------PGLKECKDPTYHYEVNCL  876
             H               K E    SL  AK K+++ F       +  EC ++ +HYE+NCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  937   RLSSVDLERLYQNVSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDE  996
             RL+SVDL+R+YQN+SVWLWN ++YRY++ + DELGF  FT++LNCY+++   G T C+ E
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  997   LKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1056
             LK  L++  MIYGEKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1057  VSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEss-asvpvtvtvaLADDL  1115
             V++       T+ + +N + WFAGN  +TG WA A++  ++  S  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1116  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1173
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1183

Query  1174  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1233
              APFY DG W+N+L+S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1234  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1291
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1292  ttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1325
             T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

57) yghJ in NC_017651


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  983 bits (3727),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 617/1294 (48%), Positives = 908/1294 (71%), Gaps = 76/1294 (5%)

Query  92    LTLGGSQRVTGAT-CNGESSDGFTFTPGEDVTCVAGNTTIATFDTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  269
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTFE  321
             II S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG + +G N + LIHRY++ + +    +PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANID-DSKLIIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGE-ALSEGDQTFERT-NEFLEQFESGQAKEIDTAICD----SLGGCNSQRWF  435
             +I+LSL+NG+  L  GD   +    EFL QF+ G A  ID +I       + +  +++  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTARNVNEGQIQGVINKLWGVDKDY-----KSVTKFHVFHDSTNFYGSTGNARGQAVVN  490
               +A + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLS  610
             LG++G GK+MV+GN++YNS+L CPNG+SW GGV KNG C+ +SDS+DM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYLT  592

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
             +   T++    + VGTN+  VYFK  GQ  G  A+F +++ F+    ++L+S+ DLD + 
Sbjct  593   GS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVKT  649

Query  671   MPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  730
             MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVDG  787
               ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  788   ------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEAD  840
                   +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  841   H---------------KTE---DSLKAAKAKIFEKF------PGLKECKDPTYHYEVNCL  876
             H               K E    SL  AK K+++ F       +  EC ++ +HYE+NCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  937   RLSSVDLERLYQNVSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDE  996
             RL+SVDL+R+YQN+SVWLWN ++YRY++ + DELGF  FT++LNCY+++   G T C+ E
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  997   LKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1056
             LK  L++  MIYGEKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1057  VSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEss-asvpvtvtvaLADDL  1115
             V++       T+ + +N + WFAGN  +TG WA A++  ++  S  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1116  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1173
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1183

Query  1174  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1233
              APFY DG W+N+L+S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1234  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1291
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1292  ttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1325
             T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

58) ETEC_3241 in NC_017633


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  983 bits (3727),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 619/1295 (48%), Positives = 903/1295 (70%), Gaps = 80/1295 (6%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F +   ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGEAISFGIDTFE  323
             II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGAT---LGEGEQVVNLPNEFIEQFNTGQAKEIDTAICA----KTDGCNEARW  436
             +I+LSL+NG     +G+G   + +P EF+ QF+ G A  ID +I +    K ++    + 
Sbjct  357   VISLSLPNGDIELDIGDGKTQI-VPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTTRNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  491
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETASFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T++FNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  612   SNDRWLPDAKSSMTVGTNLETVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNPD  671
             +     ++  + + VGTN+  VYFK  GQ +G  A F ++  F+  T + +TS+ +L+  
Sbjct  592   TGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDVK  648

Query  672   EVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVMS  731
              +PL+I+N+++Y  +  + PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  732   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYPAVD  788
                ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R   IWV ERY+AVD
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  789   GKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFIDEA  841
             + +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFIDE+
Sbjct  766   DESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  842   DH--------------KTPE----SLAAAKQRILDAF------PGLEVCKDSDYHYEVNC  877
             +H                PE    SL+ AK+++LDAF       +   C +S++HYE+NC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  878   LEYRPGTDVPVTGGMYVPQYTQLDLSADTAKAMLQAADLGTNIQRLYQHELYFRTNGRQG  937
             LEYRPG  +P+TGG+YVP+YT++ L+   A+AM++AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  938   ERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQCSA  996
              RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGF  FT++LNCYT+N   G T C+A
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  997   ELKKSLIDNKMIYGEESSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1055
             ELK  LI+  MIYGE S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1056  VVNTNGETVTQNINLYSAPTKWFAGNMQSTGLWAPAQQEVSIESKS-TVPVTVTVALADD  1114
              V T        +++ +  + WFAGN  +TG WA A+Q  S+   + T PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1115  LTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTFTGV  1172
             LTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTFSGT  1182

Query  1173  VKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFANDLDTFASS  1232
             + APFY DGKW++ L+S AP+GE+ S +F++T+PK NLNA  Y GG+EQFA+DLD F++ 
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1242

Query  1233  MNDFYGRDS--EDGKHRMFTYKNLPGHKHRFANDVQISIGDAHSGYPVMnssfspnsttl  1290
             +NDFY+RD   +++K+R  T K++P ++H+F NDV IS+G AHSGYPVMN SF  +S +L
Sbjct  1243  LNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1302

Query  1291  pttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1325
              T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1303  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

59) ECNA114_3049 in NC_017644


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  983 bits (3727),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 617/1294 (48%), Positives = 908/1294 (71%), Gaps = 76/1294 (5%)

Query  92    LTLGGSQRVTGAT-CNGESSDGFTFTPGEDVTCVAGNTTIATFDTQSEAARSLRAVEKVS  150
             +TL+G+ +  ++  CN++ +  F ++  ++V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  151   FSLEDAQELAASDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQ-IDLA  209
             +SL  A+E   S  ++ N   L+ +  +   + +++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMAT--IHGDKISLVFRSTLDALTFENYLRHNLDLP  177

Query  210   PEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPTE  269
              ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  270   IILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTFE  321
             II S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  322   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVINE  381
             LGS R+NK+ + ++ELG + +G N + LIHRY++ + +    +PD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANID-DSKLIIPDKVTQIFSLYPNVINE  356

Query  382   IINLSLSNGE-ALSEGDQTFERT-NEFLEQFESGQAKEIDTAICD----SLGGCNSQRWF  435
             +I+LSL+NG+  L  GD   +    EFL QF+ G A  ID +I       + +  +++  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK--  414

Query  436   SLTARNVNEGQIQGVINKLWGVDKDY-----KSVTKFHVFHDSTNFYGSTGNARGQAVVN  490
               +A + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA VN
Sbjct  415   -KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVN  473

Query  491   ISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFIS  550
             I+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFIS
Sbjct  474   IANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFIS  533

Query  551   LGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYLS  610
             LG++G GK+MV+GN++YNS+L CPNG+SW GGV KNG C+ +SDS+DM +F  NV+RYL+
Sbjct  534   LGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYLT  592

Query  611   DDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQE  670
             +   T++    + VGTN+  VYFK  GQ  G  A+F +++ F+    ++L+S+ DLD + 
Sbjct  593   GS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVKT  649

Query  671   MPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSN  730
             MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++ 
Sbjct  650   MPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIINT  709

Query  731   LKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVDG  787
               ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD+
Sbjct  710   --QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVDD  766

Query  788   ------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEAD  840
                   +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE++
Sbjct  767   ESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDESQ  825

Query  841   H---------------KTE---DSLKAAKAKIFEKF------PGLKECKDPTYHYEVNCL  876
             H               K E    SL  AK K+++ F       +  EC ++ +HYE+NCL
Sbjct  826   HWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINCL  885

Query  877   EYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGE  936
             EYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G 
Sbjct  886   EYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFGT  945

Query  937   RLSSVDLERLYQNVSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSDE  996
             RL+SVDL+R+YQN+SVWLWN ++YRY++ + DELGF  FT++LNCY+++   G T C+ E
Sbjct  946   RLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPAE  1005

Query  997   LKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGA  1056
             LK  L++  MIYGEKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG 
Sbjct  1006  LKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPGE  1065

Query  1057  VSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEss-asvpvtvtvaLADDL  1115
             V++       T+ + +N + WFAGN  +TG WA A++  ++  S  + PVT+T+AL DDL
Sbjct  1066  VTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDDL  1125

Query  1116  TGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGVV  1173
             TGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G +
Sbjct  1126  TGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGTI  1183

Query  1174  KAPFYKDGEWKNALNSPAPLGELESDAFVYTTPKKNLEASNFTGGVAEFAKDLDTFASSM  1233
              APFY DG W+N+L+S AP+GE+ SD+F++T+PK NL+A  + GG+ +FAKDLD F++ +
Sbjct  1184  DAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADL  1243

Query  1234  NDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttlp  1291
             NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L 
Sbjct  1244  NDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLN  1303

Query  1292  ttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1325
             T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1304  TMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

60) yghJ in NC_011601


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  983 bits (3727),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 622/1298 (48%), Positives = 911/1298 (71%), Gaps = 80/1298 (6%)

Query  94    LTLGGSQRITGAT-CNGESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  152
             +TL+G+ ++ ++  CN++ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  153   SFSLEDAQELAASDDKKSNAVSLVTSSNSCPADTEQVCLTFSSVIESKRFDSLYKQ-IDL  211
              +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDL  176

Query  212   APEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPT  271
             + ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  272   EIILSEGRLVDSQGYGVAGVNYYTNSGRGVTG--------ENGEFSFSWGETISFGIDTF  323
             +II S GRL+DSQG  + GV+Y++N+ RG+TG        ++G F FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  324   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVIN  383
             ELGS R+NK+ + ++ELG + +G N + LIHRY+  ++++  ++PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANIDDSKL-IIPDKVTQIFSLYPNVIN  355

Query  384   EIINLSLSNGAT-LDEGDQNV-VLPNEFIEQFKTGQAKEIDTAICA----KTDGCNEARW  437
             E+I+LSL+NG   LD GD +  ++P EF+ QF  G A  ID +I +    K ++    + 
Sbjct  356   EVISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  438   FSLTTRNVNDGQIQGVINKLWGVDKDY-----KSVTKFHVFHDSTNFYGSTGNARGQAVV  492
                ++ + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  493   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVQPENVTRDTATFNLPFI  552
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  553   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLSGDSDDMKHFMQNVLRYL  612
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+LS+DSDDM +F  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  613   SDDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQ  672
             ++   T++    + VGTN+  VYFK  GQ  G  A+F +++ F+    ++L+S+ DLD +
Sbjct  592   TGS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVK  648

Query  673   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  732
              MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  733   NLKEESASGFVRLLDAAGLSMALNKSVVNTD---PQGYPNRVRQQREKGIWVYERYPAVD  789
                ++++  F RLLD+AG++ ++ +SVV  +   + GYP+R R QRE GIWV ERY+AVD
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  790   SAQP-----PYTIDPDTGKVTWKYQEEGKPDDKPKLEVASWQEDVDG-KQVTRYAFIDEA  843
                +     PY I +D G V WKY  E +PDDKPKLEVASW E   G K +T+YAFIDE+
Sbjct  766   DESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  844   EH------------------STEESLEAAKAKIFEKF------PGLQECKDSTYHYEINC  879
             +H                    + SL  AK K+++ F       +  EC +S +HYEINC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  880   LERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  939
             LE RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  940   ERLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANNAYSEGTQCSA  999
              RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGF  FT++LNCY++N  +  T C+A
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  1000  DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1058
             +LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1059  AVSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQQEVTIEst-asvpvtvtvaLADD  1117
              V++       T+ + +N + WFAGN  +TG WA A+Q  ++  +  + PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1118  LTGREKHEVALNRPPKVTKTYDLKAND--KVTFKVPYGGLIYIKGNSPKNESAEFTFTGV  1175
             LTGREKHE++L+RPP+++K++ + ++     TF VPYGGLIY +G   +++   +TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGG--NSQQVKLTFSGT  1182

Query  1176  VKAPFYKDGEWKNALNSPAPLGELESDSFVYTAPKNNLNASNYSNYTDGVAEFAKELDTF  1235
             + APFY DG W+N+L+S AP+GE+ SD+F++TAPK NLNA     Y +G+ +FAK+LD F
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNA---DGYLGGIEQFAKDLDQF  1239

Query  1236  ASSMNDFYGRDG--ESGNHRMFTYKALTGHKHRFANDVQISIGDAHSGYPVMNSSFstns  1293
             ++ +NDFY+RD   +++++R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S
Sbjct  1240  SADLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSS  1299

Query  1294  ttlpttplnDWLIWHEVGHNAAETPLNVPGATEVANNV  1331
              +L T PLN WL+WHEVGHN+AE+P+NV GATEV NN+
Sbjct  1300  RSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

61) yghJ in NC_011740


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  970 bits (3676),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 624/1298 (49%), Positives = 905/1298 (70%), Gaps = 86/1298 (6%)

Query  99    LTLGGSQRVSGAF-CNNAPSVGFTFTPGDTVTCVIGGTTIATFDTLAETARSRSDVEKVA  157
             +TL+G+ +  +++ CN+  +  F ++  D V C I G +IATF +  ++ ++  + +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  158   FSLEDAQELASSENKKNNALALVTSSNSCPSDDEQVCLNFTSVVDRARFEKLYKQ-IDLA  216
             +SL  A+E   S  +++N   L+ +  +  +D  ++ L F S +D   FE+  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  217   KEDFQKLVNEEVENNAATDKAPSTHtspvvpattpgttpDLNAKFVSANAEQFYQYQPTE  276
             K++F   + E + N+   DK PSTH + + P+ T+GT+++LN+ FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  277   IILSEGRLVDSLGNGVVGVNYYTSSGRGVTG--------ENGKFSFSWGETISFGIDTFE  328
             II S GRL+DS G  + GV+Y++++ RG+TG        ++G F FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  329   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGENNDREIPDVVRKVFAEYPNVINE  388
             LGS R+NK+ + ++ELG + +G N + LIHRY++  +++   IPD V ++F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANI-DDSKLIIPDKVTQIFSLYPNVINE  356

Query  389   IINLSLSNGAT-LNEGDQTVEL-PNEFLAQLKSGQAKEIDTAICNTTGSCNSPRWFSL--  444
             +I+LSL+NG   L+ GD   ++ P EFL Q+  G A  ID +I   +       +F +  
Sbjct  357   VISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPIS-------RFKFED  409

Query  445   ------TARNINEGQIQGVINKLWGVDEDY-----KSVSKFHVFHDSTNFYGSTGNARGQ  493
                   +A + + +QIQ++INKLWG  +       K V +FH+FHDSTNFYGSTG+AR+Q
Sbjct  410   SLPKKKSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQ  469

Query  494   AVINISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVTRETATFNL  553
             A +NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ +T+TFNL
Sbjct  470   AAVNIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNL  529

Query  554   PFISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENML  613
             PFISLG++G GK+MV+GN++YNS+L CPNG+SW GGV K+G C+L+SD+DDM NF  N++
Sbjct  530   PFISLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVI  588

Query  614   RYLSNDRWLPDAKSNMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFAGITVKPMTSYGNL  673
             RYL+     ++  +++ VGTN+  VYFK  GQ +G  A F ++  F+  T + +TS+ +L
Sbjct  589   RYLTGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDL  645

Query  674   NPDEVPLLILNGFEYVTHWGSDPYSIPLRADSSKPKLTQQDVTDLIAYMNKGGSVLIMEN  733
             +   +PL+I+N+++Y     + PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME 
Sbjct  646   DVKTMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMET  705

Query  734   VMSNLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRSTPIWVYERYP  790
             +++   ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R   IWV ERY+
Sbjct  706   IINT--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYS  762

Query  791   AVDGKP------PYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEG-KQVTQFAFI  843
             AVD+ +      PY I      V WKY  EN+PDDKPKLEVASW E   G K +T++AFI
Sbjct  763   AVDDESSGQQTLPYVIKSDGS-VEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFI  821

Query  844   DEADH--------------KTPE----SLAAAKQRILDAF------PGLEECKDSDYHYE  879
             DE++H                PE    SL+ AK+++LDAF       +  EC +S++HYE
Sbjct  822   DESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYE  881

Query  880   VNCLEYRPGTDVPVTGGMFVPRYTQLNLDADTAKAMLQAADLGTNIQRLYQHELYFRTNG  939
             +NCLEYRPG  +P+TGG++VPRYT+++L+   A+AM++AA+LGTNI  LYQHE YFRT+G
Sbjct  882   INCLEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKG  941

Query  940   RQGERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVG-TQ  998
             + G RLNSVDL+R+YQNMSVWLWN+  YRY++ + DELGF  FT++LNCYT+N   G T 
Sbjct  942   KFGTRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTT  1001

Query  999   CSAELKKSLIDNKMIYGEESSK-VGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEK  1057
             C+AELK  LI+  MIYGE S+   G M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +
Sbjct  1002  CPAELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRN  1061

Query  1058  YPGVVDTNGETVTQNINLYSDPTKWFAGNMQSTGLWAPAQQEVSIE-SKatvpvtvtval  1116
             YPG V T        +++ ++ + WFAGN  +TG WA A+Q  S+  S  T PVT+T+AL
Sbjct  1062  YPGEVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIAL  1121

Query  1117  aDDLTGREKHEVSLNRPPRVTKTYDLKAND--KVTFKVPYGGLIYIKGDSKEVQSADFTF  1174
              DDLTGREKHE++L+RPPR++K++ + ++     TF VPYGGLIY +G++   Q   +TF
Sbjct  1122  VDDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNS--QQVKLTF  1179

Query  1175  TGVVKAPFYKDGKWQHDLNSPAPLGELESASFVYTTPKKNLNASNYTGGLEQFAKDLDTF  1234
             +G + APFY DGKW++ L+S AP+GE+ S +F++T+PK NLNA  Y GG+EQFAKDLD F
Sbjct  1180  SGTIDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQF  1239

Query  1235  ASSMNDFYGRDS--ESGNHRMFTYKALTGHKHRFANDVQISIGDAHSGYPVMnssfspns  1292
             ++ +NDFY+RD   +++++R  T K++  ++H+F NDV IS+G AHSGYPVMN SF  +S
Sbjct  1240  SADLNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSS  1299

Query  1293  ttlpttplnDWLIWHEVGHNAAETPLTVPGATEVANNV  1330
              +L T PLN WL+WHEVGHN+AE+P+ V GATEV NN+
Sbjct  1300  RSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

62) ECP_3050 in NC_008253


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  970 bits (3674),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 615/1295 (48%), Positives = 903/1295 (70%), Gaps = 77/1295 (5%)

Query  94    LTLGGSQRITGAT-CNGESSDGFTFTPGDKVTCVAGNNTTIATFDTQSEAARSLRAVEKV  152
             +TL+G+ ++ ++  CN++ +  F ++  D+V C   N  +IATF +  +A ++ R  +  
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTI-NGRSIATFTAPFDANKNGRNTDSE  118

Query  153   SFSLEDAQELAASDDKKSNAVSLVTSSNSCPADTEQVCLTFSSVIESKRFDSLYKQ-IDL  211
              +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL
Sbjct  119   VLSLISADEYRYSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDL  176

Query  212   APEEFKKLVNEEVENNAATDKApsthtspvvpvttpgtkpDLNASFVSANAEQFYQYQPT  271
             + ++F   + E + N+   DK PSTH + + P  T+GT ++LN++FVSANAE+   Y PT
Sbjct  177   PKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPT  236

Query  272   EIILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTF  323
             +II S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ I+F+IDTF
Sbjct  237   DIIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTF  296

Query  324   ELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRKVFAEYPNVIN  383
             ELGS R+NK+ + ++ELG + +G N + LIHRY++ + +    +PD V ++F+ YPNVIN
Sbjct  297   ELGSTRANKTEFYISELGKDNQGKNAEALIHRYANID-DSKLIIPDKVTQIFSLYPNVIN  355

Query  384   EIINLSLSNGE-ALSEGDQTFERT-NEFLEQFESGQAKEIDTAICD----SLGGCNSQRW  437
             E+I+LSL+NG+  L  GD   +    EFL QF+ G A  ID +I       + +  +++ 
Sbjct  356   EVISLSLPNGDIELDIGDGKTQIVPGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  438   FSLTARNVNDGQIQGVINKLWGVDTNY-----KSVSKFHVFHDSTNFYGSTGNARGQAVV  492
                +A + + +QIQ++INKLWG          K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  493   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  552
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  553   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWEGGVDKNGQCTRNSDSNDMKHFMQNVLRYL  612
             SLG++G GK+MV+GN++YNS+L CPNG+SW GGV KNG C+ +SDS+DM +F  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  613   SDDKWTPDAKASMTVGTNLDTVYFKRHGQVTGNSAEFGFHPDFAGISVEHLSSYGDLDPQ  672
             ++   T++    + VGTN+  VYFK  GQ  G  A+F +++ F+    ++L+S+ DLD +
Sbjct  592   TGS--TSNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSK-QTQQLTSFHDLDVK  648

Query  673   EMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  732
              MPL+I+N+++Y  +  N PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  733   NLKEESASGFVRLLDAAGLSMALNKSVVNND---PQGYPNRVRQQRATGIWVYERYPAVD  789
                ++++  F RLLD+AG++ ++ +SVV N+   + GYP+R R QR  GIWV ERY+AVD
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  790   G------ALPYTIDSKTGEVKWKYQVENKPDDKPKLEVASWLEDVDG-KQETRYAFIDEA  842
             +      +LPY I S  G V WKY VEN+PDDKPKLEVASW+E   G K  T+YAFIDE+
Sbjct  766   DESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  843   DH---------------KTE---DSLKAAKAKIFEKF------PGLKECKDPTYHYEVNC  878
             +H               K E    SL  AK K+++ F       +  EC ++ +HYE+NC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  879   LEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKG  938
             LEYRPG ++P+TGG+YVP+YT++ L    A+AMV+AA+LGTNI  LYQHE YFRT+G+ G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  939   ERLSSVDLERLYQNMSVWLWNKIEYRYENDKDDELGFKTFTEFLNCYANDAYTGGTQCSD  998
              RL+SVDL+R+YQNMSVWLWN ++YRY++ + DELGF  FT++LNCY+++   G T C+ 
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  999   ELKKSLVDNNMIYGEKSVNKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1058
             ELK  L++  MIYGEKS + AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1059  AVSAEGEKVTETISLYSNPTKWFAGNMQSTGLWAPAQKEVTIEstasvavtvtval-add  1117
              V++       T+ + +N + WFAGN  +TG WA A++  ++  ++  +         DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1118  ltGREKHEVALNRPPKVTKTYELKANGE--VKFTVPYGGLIYIKGNSPQNESAEFTFTGV  1175
             LTGREKHE++L+RPP+++K++ + +++     FTVPYGGLIY +G ++Q+    +TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQ--VKLTFSGT  1182

Query  1176  VKAPFYKDGAWKNALNSPAPLGELESDAFVYTTPKKNLEASNYKGGQEQFAEELDTFASS  1235
             + APFY DG W+N+L+S AP+GE+ SD+F++T+PK NL+A  Y GG EQFA +LD F++ 
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1242

Query  1236  MNDFYGRND--EDGKHRMFTYKNLTGHKHRFTNDVQISIGDAHSGYPVMNSSFstnsttl  1293
             +NDFY+R++  +++K+R  T K++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L
Sbjct  1243  LNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1302

Query  1294  pttplnDWLIWHEAGHNAAETPLTVPGATEVANNV  1328
              T PLN WL+WHE GHN+AE+P+ V GATEV NN+
Sbjct  1303  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337

63) ECSF_2797 in NC_013654


> FJ209017|3|G3|218158694|ACK75661.1|Vibrio_cholerae_M1593|+|1655..5665|acfD|-|accessory 
colonization factor AcfD
Length=1337

 Score =  964 bits (3653),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 610/1295 (48%), Positives = 906/1295 (70%), Gaps = 78/1295 (6%)

Query  94    LTLGGSQRVTGAT-CNGESSDGFTFTPGKDVTCVAGNTTIATFNTQSEAARSLRAVEKVS  152
             +TL+G+ +  ++  CN++ +  F ++   +V C     +IATF +  +A ++ R  +   
Sbjct  60    MTLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEV  119

Query  153   FSLEDAQELAASDNKKSNAVSLVTSSNSCPADTEQVCLTFSSVIESKRFDSLYKQ-IDLA  211
             +SL  A+E   S  ++ N   L+ +  +  +D  ++ L F S +++  F++  ++ +DL+
Sbjct  120   LSLISADEYRYSPVRQENLQILMKNMATIHGD--KISLVFRSTLDALTFENYLRHNLDLP  177

Query  212   PEEFKKLVNEEVENNAATDKApsthtssvvpvttpgtKPDLNASFVSANAEQFYQYQPTE  271
              ++F   + E + N+   DK PSTH +++ P  T+GT ++LN++FVSANAE+   Y PT+
Sbjct  178   KDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTSGTSSNLNSPFVSANAEESLSYIPTD  237

Query  272   IILSEGRLVDSMGNGVVGVNYYTSSGRGVTG--------ENGKFNFSWGETISFGIDTFE  323
             II S GRL+DS G  + GV+Y++++ RG+TG        ++G F+FSWG+ I+F+IDTFE
Sbjct  238   IIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIITFSIDTFE  297

Query  324   LGSVRGNKSTIALTELGDEVRGANIDQLIHRYSQAGKNDEREVPDVVRQVFAEYPNVINE  383
             LGS R+NK+ + ++ELG + +G N + LIHRY++ + +    +PD V Q+F+ YPNVINE
Sbjct  298   LGSTRANKTEFYISELGKDNQGKNAEALIHRYANID-DSKLIIPDKVTQIFSLYPNVINE  356

Query  384   IINLSLSNGE---ALSEGDQNFPRTNEFLEQLKSGQAKEIDTAICN----SLGGCNSQRW  436
             +I+LSL+NG+    +++G  ++    EFL Q+  G A  ID +I       + +  +++ 
Sbjct  357   VISLSLPNGDIELDIGDGKTQIV-PGEFLKQFDYGLAALIDQSISPISRFKFEDSLPKK-  414

Query  437   FSLTARNVNEGQIQGVINKLWGVDEDY-----KSVTKFHVFHDSTNFYGSTGNARGQAVV  491
                +A + + +QIQ++INKLWG  +       K V +FH+FHDSTNFYGSTG+AR+QA V
Sbjct  415   --KSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAV  472

Query  492   NISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFI  551
             NI+N+AFP+LMARND+NYW+ FG  +AWD N LA+ITEAPS V P++V+ DT+TFNLPFI
Sbjct  473   NIANSAFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFI  532

Query  552   SLGQVGEGKLMVIGNPHYNSILRCPNGYSWNGSVNKDGQCTLNSDPDDMKNFMENVLRYL  611
             SLG++G GK+MV+GN++YNS+L CPNG+SW G+V K+G C+L+SD+DDM NF  NV+RYL
Sbjct  533   SLGEIGKGKMMVLGNARYNSVLVCPNGFSWGGGV-KNGTCSLSSDSDDMANFFSNVIRYL  591

Query  612   SNERWLPDAKSSMTVGTNLDTVYFKKAGQVLGNSAPFAFHKDFAGITVKPMTSYGNLNPD  671
             +     ++  + + VGTN+  VYFK +GQ +G  A F ++  F+  T + +TS+ +L+  
Sbjct  592   TGST--SNDFNDVIVGTNIPEVYFKSSGQAMGLKANFELDSRFSKQT-QQLTSFHDLDVK  648

Query  672   EVPLLILNGFEYVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMS  731
              +PL+I+N+++Y  +  + PY IPL AD   PKL++ DV+DLI Y+N+GGSVL+ME +++
Sbjct  649   TMPLVIINAYDYKGKNINSPYDIPLSADVDSPKLSRSDVSDLIDYINNGGSVLMMETIIN  708

Query  732   NLKEESASSFVRLLDAAGLSMALNKSVVNND---PQGYPDRVRQRRATGIWVYERYPAAD  788
                ++++  F RLLD+AG++ ++ +SVV N+   + GYPDR R +R  GIWV ERY+A D
Sbjct  709   T--QNNGEVF-RLLDSAGIAFGIGNSVVANGNGPSGGYPDRPRSQREHGIWVIERYSAVD  765

Query  789   GAQP-----PYTIDPNTGEVTWKYQQDNKPDDKPKLEVASWQEEVEG-KQVTRYAFIDEA  842
             +  +     PY I ++ G V WKY  +N+PDDKPKLEVASW E   G K +T+YAFIDE+
Sbjct  766   DESSGQQTLPYVIKSD-GSVEWKYIVENRPDDKPKLEVASWVESGTGDKLITHYAFIDES  824

Query  843   E-----------YTT-------EESLEAAKAKIFEKF------PGLQECKDSTYHYEINC  878
             +           Y         + SL  AK K+++ F       +  EC +S +HYEINC
Sbjct  825   QHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECENSEFHYEINC  884

Query  879   LERRPGTDVPVTGGMYVPRYTQLNLDADTAKAMVQAADLGTNIQRLYQHELYFRTKGSKG  938
             LE RPG  +P+TGG+YVPRYT+++L+   A+AMV+AA+LGTNI  LYQHE YFRTKG  G
Sbjct  885   LEYRPGNSIPITGGLYVPRYTEIKLGESEANAMVKAANLGTNIYALYQHERYFRTKGKFG  944

Query  939   ERLNSVDLERLYQNMSVWLWNDTKYRYEEGKEDELGFKTFTEFLNCYANDAYAGGTKCSA  998
              RLNSVDL+R+YQNMSVWLWND  YRY++ + DELGF  FT++LNCY+++  +G T C+A
Sbjct  945   TRLNSVDLNRIYQNMSVWLWNDLDYRYDDKQSDELGFEIFTQYLNCYTSNQAGGNTTCPA  1004

Query  999   DLKKSLVDNNMIYGDGSSK-AGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPG  1057
             +LK  L++  MIYG+ S+  AG M+PSYPLNYMEKPLTRLMLGRS WDL+IK D+ +YPG
Sbjct  1005  ELKDELIQLGMIYGEKSGSYAGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKADIRNYPG  1064

Query  1058  SVSAKGESVTENISLYSNPTKWFAGNMQSTGLWAPAQQDVTIKss-asvpvtvtvaLADD  1116
              V+++  +    + + +N + WFAGN  +TG WA A+Q  ++  S  + PVT+T+AL DD
Sbjct  1065  EVTTRTGGGDITLDMRNNTAAWFAGNRLPTGQWAEAHQPFSVSVSGETSPVTITIALVDD  1124

Query  1117  LTGREKHEVALNRPPRVTKTYTLEANGE--VTFKVPYGGLIYIKGDSKDDVSANFTFTGV  1174
             LTGREKHE++L+RPPR++K++ + +++    TF VPYGGLIY +G++ ++V  ++TF+G 
Sbjct  1125  LTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQV--KLTFSGT  1182

Query  1175  VKAPFYKDGEWKNDLDSPAPLGELESASFVYTTPKKNLEASNFTGGVAEFAKDLDTFASS  1234
             + APFY DG W+N L S AP+GE+ S +F++T+PK NL+A  + GG+ +FAKDLD F++ 
Sbjct  1183  IDAPFYIDGKWRNPLSSGAPIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSAD  1242

Query  1235  MNDFYGRNET--SGNHRMFTYEALTGHKHRFANDVQISIGDAHSGYPVMnssfstnsstl  1292
             +NDFY+R+E   ++++R  T  ++  ++H+F NDV IS+G AHSGYPVMN SF T+S +L
Sbjct  1243  LNDFYARDEGVDGDKNRKATDKSMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSL  1302

Query  1293  pttplnDWLIWHEVGHNAAETPLNVPGATEVANNV  1327
              T PLN WL+WHEVGHN+AE+P+NV GATEV NN+
Sbjct  1303  NTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNL  1337