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PAthogenisity Island DataBase (PAI DB)

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Homologs of tcpA gene of FJ209008

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

• Sequence Alignments

1) O3Y_03850 in NC_016944


> FJ209008|3|G3|218158650|ACK75626.1|Vibrio_cholerae_M1593|+|1569..2243|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  250 bits (932),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 159/204 (78%), Positives = 191/204 (94%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYP+TA+A AA+ L++GLVSLGK+SADEAKNPFTGT + I SFPRN+A+NKAFAI+V+GL
Sbjct  81   NYPTTADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTLVTSVGDMFP+INV++ +  A+ADL DFET+ A+AA+G+G+IKSIA GS NLN
Sbjct  141  TQAQCKTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLN  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+ITHV++LC+GT+ F+VAFGNS
Sbjct  201  LTEITHVQNLCAGTGTFSVAFGNS  224

2) tcpA in NC_012578


> FJ209008|3|G3|218158650|ACK75626.1|Vibrio_cholerae_M1593|+|1569..2243|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  250 bits (932),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 159/204 (78%), Positives = 191/204 (94%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYP+TA+A AA+ L++GLVSLGK+SADEAKNPFTGT + I SFPRN+A+NKAFAI+V+GL
Sbjct  81   NYPTTADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTLVTSVGDMFP+INV++ +  A+ADL DFET+ A+AA+G+G+IKSIA GS NLN
Sbjct  141  TQAQCKTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLN  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+ITHV++LC+GT+ F+VAFGNS
Sbjct  201  LTEITHVQNLCAGTGTFSVAFGNS  224

3) VCD_003500 in NC_012668


> FJ209008|3|G3|218158650|ACK75626.1|Vibrio_cholerae_M1593|+|1569..2243|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  250 bits (932),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 159/204 (78%), Positives = 191/204 (94%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYP+TA+A AA+ L++GLVSLGK+SADEAKNPFTGT + I SFPRN+A+NKAFAI+V+GL
Sbjct  81   NYPTTADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTLVTSVGDMFP+INV++ +  A+ADL DFET+ A+AA+G+G+IKSIA GS NLN
Sbjct  141  TQAQCKTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLN  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+ITHV++LC+GT+ F+VAFGNS
Sbjct  201  LTEITHVQNLCAGTGTFSVAFGNS  224

4) VC0828 in NC_002505


> FJ209008|3|G3|218158650|ACK75626.1|Vibrio_cholerae_M1593|+|1569..2243|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  250 bits (932),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 159/204 (78%), Positives = 191/204 (94%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYP+TA+A AA+ L++GLVSLGK+SADEAKNPFTGT + I SFPRN+A+NKAFAI+V+GL
Sbjct  81   NYPTTADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTLVTSVGDMFP+INV++ +  A+ADL DFET+ A+AA+G+G+IKSIA GS NLN
Sbjct  141  TQAQCKTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLN  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+ITHV++LC+GT+ F+VAFGNS
Sbjct  201  LTEITHVQNLCAGTGTFSVAFGNS  224

5) tcpA in NC_016445


> FJ209008|3|G3|218158650|ACK75626.1|Vibrio_cholerae_M1593|+|1569..2243|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  246 bits (917),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 159/204 (78%), Positives = 192/204 (95%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLG  80

Query  81   NYPatanasaatqlanGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYP+TA+A+AA+ L++GLVSLGK+SADEAKNPFTGT + I SFPRN+A+NKAFAI+V+GL
Sbjct  81   NYPTTADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTLVTSVGDMFP+INV++ +  A+ADL DFET+ A+AA+G+G+IKSIA GS NLN
Sbjct  141  TQAQCKTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLN  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+ITHV++LC+GT+ F+VAFGNS
Sbjct  201  LTEITHVQNLCAGTGTFSVAFGNS  224

6) tcpA in NC_012582


> FJ209008|3|G3|218158650|ACK75626.1|Vibrio_cholerae_M1593|+|1569..2243|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  244 bits (910),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 164/204 (81%), Positives = 189/204 (93%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LN+IQV+LTQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLG  80

Query  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140
            NYP+TADA+AA+ LTSGLVSLGKIS+DEAKNPF GTN+NI SFPRNAA+NKAFAISVDGL
Sbjct  81   NYPTTADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGL  140

Query  141  TQAQCKTLITSVGDMFPYIAIKaggavaladlgdFENSAAAAETGVGVIKSIAPASKNLD  200
            TQAQCKTL+TSVGDMFPYI ++  +A+ALADL DFE +AA A +G G+IKSIA +S NL+
Sbjct  141  TQAQCKTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLN  200

Query  201  LTNITHVEKLCKGTAPFGVAFGNS  224
            LT+ITHV++LC GT+ F+VAFGNS
Sbjct  201  LTEITHVQNLCAGTGTFSVAFGNS  224

7) tcpA in NC_009457


> FJ209008|3|G3|218158650|ACK75626.1|Vibrio_cholerae_M1593|+|1569..2243|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  244 bits (910),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 164/204 (81%), Positives = 189/204 (93%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LN+IQV+LTQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLG  80

Query  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140
            NYP+TADA+AA+ LTSGLVSLGKIS+DEAKNPF GTN+NI SFPRNAA+NKAFAISVDGL
Sbjct  81   NYPTTADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGL  140

Query  141  TQAQCKTLITSVGDMFPYIAIKaggavaladlgdFENSAAAAETGVGVIKSIAPASKNLD  200
            TQAQCKTL+TSVGDMFPYI ++  +A+ALADL DFE +AA A +G G+IKSIA +S NL+
Sbjct  141  TQAQCKTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLN  200

Query  201  LTNITHVEKLCKGTAPFGVAFGNS  224
            LT+ITHV++LC GT+ F+VAFGNS
Sbjct  201  LTEITHVQNLCAGTGTFSVAFGNS  224

8) tcpA in NC_006841


> FJ209008|3|G3|218158650|ACK75626.1|Vibrio_cholerae_M1593|+|1569..2243|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  149 bits (549),  Expect = 8e-38, Method: Compositional matrix adjust.
 Identities = 92/195 (48%), Positives = 141/195 (73%), Gaps = 5/195 (2%)

Query  6    QRGMTLLEVIIVLGIMGVISAGVVILAQRAIDNQNVSKLSQALNTIQTAMVQTYRSKQSY  65
            Q GMTLLEVIIVLGIMGV+SAGVV LAQRAID+QN++K +Q LNTIQ ++ QTYRS  +Y
Sbjct  23   QEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLGNY  82

Query  66   PDVLQDAVKAKKLTDALVSMGRVTESDLINPFTGAPMLIFTAKDNKAANRGFAIKVSDLS  125
            P    DA  A  LT +LVS+G+++  +  NPFTG+ + I +   N A+N++FAI V +L+
Sbjct  83   PTT-ADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGLT  141

Query  126  KDQCTSLISNSADLFSFIEVQNRGTAMAADFY----VDPDATKSVGVIKSTKGGAKTLDL  181
            + QC +L+++ +D+F++I+VQ++++   AD+       ++A+ + G+IKS   G+  L+L
Sbjct  142  QAQCKTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLNL  201

Query  182  TNLDHISALCGGPGA  196
            T++ H+  LC+G G+
Sbjct  202  TEITHVQNLCAGTGT  216