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PAthogenisity Island DataBase (PAI DB)

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Homologs of tcpA gene of FJ209007

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

• Sequence Alignments

1) O3Y_03850 in NC_016944


> FJ209007|3|G3|218158644|ACK75621.1|Vibrio_cholerae_M1567|+|1746..2420|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  260 bits (970),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 161/204 (79%), Positives = 189/204 (93%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATA+A AA+ L++G+VSLGK+SADEAKNPFTG  + I SFPRN+A+NKAFAI+V+GL
Sbjct  81   NYPATADAAAAAALTSGMVSLGKISADEAKNPFTGNNLNIWSFPRNAAGNKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTLVTSVGDMFP+INV+E A  A+ADLGDFET+ A+A TG G+IKSIA GS NLN
Sbjct  141  TQAQCKTLVTSVGDMFPYINVQEKAAVALADLGDFETGPANAVTGKGIIKSIATGSVNLN  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+ITHV++LC+GT+ F+VAFGNS
Sbjct  201  LTEITHVQNLCAGTGTFSVAFGNS  224

2) tcpA in NC_012578


> FJ209007|3|G3|218158644|ACK75621.1|Vibrio_cholerae_M1567|+|1746..2420|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  260 bits (970),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 161/204 (79%), Positives = 189/204 (93%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATA+A AA+ L++G+VSLGK+SADEAKNPFTG  + I SFPRN+A+NKAFAI+V+GL
Sbjct  81   NYPATADAAAAAALTSGMVSLGKISADEAKNPFTGNNLNIWSFPRNAAGNKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTLVTSVGDMFP+INV+E A  A+ADLGDFET+ A+A TG G+IKSIA GS NLN
Sbjct  141  TQAQCKTLVTSVGDMFPYINVQEKAAVALADLGDFETGPANAVTGKGIIKSIATGSVNLN  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+ITHV++LC+GT+ F+VAFGNS
Sbjct  201  LTEITHVQNLCAGTGTFSVAFGNS  224

3) VCD_003500 in NC_012668


> FJ209007|3|G3|218158644|ACK75621.1|Vibrio_cholerae_M1567|+|1746..2420|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  260 bits (970),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 161/204 (79%), Positives = 189/204 (93%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATA+A AA+ L++G+VSLGK+SADEAKNPFTG  + I SFPRN+A+NKAFAI+V+GL
Sbjct  81   NYPATADAAAAAALTSGMVSLGKISADEAKNPFTGNNLNIWSFPRNAAGNKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTLVTSVGDMFP+INV+E A  A+ADLGDFET+ A+A TG G+IKSIA GS NLN
Sbjct  141  TQAQCKTLVTSVGDMFPYINVQEKAAVALADLGDFETGPANAVTGKGIIKSIATGSVNLN  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+ITHV++LC+GT+ F+VAFGNS
Sbjct  201  LTEITHVQNLCAGTGTFSVAFGNS  224

4) VC0828 in NC_002505


> FJ209007|3|G3|218158644|ACK75621.1|Vibrio_cholerae_M1567|+|1746..2420|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  260 bits (970),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 161/204 (79%), Positives = 189/204 (93%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATA+A AA+ L++G+VSLGK+SADEAKNPFTG  + I SFPRN+A+NKAFAI+V+GL
Sbjct  81   NYPATADAAAAAALTSGMVSLGKISADEAKNPFTGNNLNIWSFPRNAAGNKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTLVTSVGDMFP+INV+E A  A+ADLGDFET+ A+A TG G+IKSIA GS NLN
Sbjct  141  TQAQCKTLVTSVGDMFPYINVQEKAAVALADLGDFETGPANAVTGKGIIKSIATGSVNLN  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+ITHV++LC+GT+ F+VAFGNS
Sbjct  201  LTEITHVQNLCAGTGTFSVAFGNS  224

5) tcpA in NC_016445


> FJ209007|3|G3|218158644|ACK75621.1|Vibrio_cholerae_M1567|+|1746..2420|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  256 bits (955),  Expect = 7e-70, Method: Compositional matrix adjust.
 Identities = 161/204 (79%), Positives = 190/204 (94%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLG  80

Query  81   NYPatanasaatqlanGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATA+A+AA+ L++G+VSLGK+SADEAKNPFTG  + I SFPRN+A+NKAFAI+V+GL
Sbjct  81   NYPATADAAAAAALTSGMVSLGKISADEAKNPFTGNNLNIWSFPRNAAGNKAFAISVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTLVTSVGDMFP+INV+E A  A+ADLGDFET+ A+A TG G+IKSIA GS NLN
Sbjct  141  TQAQCKTLVTSVGDMFPYINVQEKAAVALADLGDFETGPANAVTGKGIIKSIATGSVNLN  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+ITHV++LC+GT+ F+VAFGNS
Sbjct  201  LTEITHVQNLCAGTGTFSVAFGNS  224

6) tcpA in NC_012582


> FJ209007|3|G3|218158644|ACK75621.1|Vibrio_cholerae_M1567|+|1746..2420|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  248 bits (925),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 165/204 (81%), Positives = 189/204 (93%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LN+IQV+LTQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLG  80

Query  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140
            NYPATADA+AA+ LTSG+VSLGKIS+DEAKNPF G N+NI SFPRNAA+NKAFAISVDGL
Sbjct  81   NYPATADAAAAAALTSGMVSLGKISADEAKNPFTGNNLNIWSFPRNAAGNKAFAISVDGL  140

Query  141  TQAQCKTLITSVGDMFPYIAIKaggavaladlgdFENSAAAAETGVGVIKSIAPASKNLD  200
            TQAQCKTL+TSVGDMFPYI ++  +AVALADLGDFE ++A A TG G+IKSIA +S NL+
Sbjct  141  TQAQCKTLVTSVGDMFPYINVQEKAAVALADLGDFETGPANAVTGKGIIKSIATGSVNLN  200

Query  201  LTNITHVEKLCKGTAPFGVAFGNS  224
            LT+ITHV++LC GT+ F+VAFGNS
Sbjct  201  LTEITHVQNLCAGTGTFSVAFGNS  224

7) tcpA in NC_009457


> FJ209007|3|G3|218158644|ACK75621.1|Vibrio_cholerae_M1567|+|1746..2420|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  248 bits (925),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 165/204 (81%), Positives = 189/204 (93%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LN+IQV+LTQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLG  80

Query  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140
            NYPATADA+AA+ LTSG+VSLGKIS+DEAKNPF G N+NI SFPRNAA+NKAFAISVDGL
Sbjct  81   NYPATADAAAAAALTSGMVSLGKISADEAKNPFTGNNLNIWSFPRNAAGNKAFAISVDGL  140

Query  141  TQAQCKTLITSVGDMFPYIAIKaggavaladlgdFENSAAAAETGVGVIKSIAPASKNLD  200
            TQAQCKTL+TSVGDMFPYI ++  +AVALADLGDFE ++A A TG G+IKSIA +S NL+
Sbjct  141  TQAQCKTLVTSVGDMFPYINVQEKAAVALADLGDFETGPANAVTGKGIIKSIATGSVNLN  200

Query  201  LTNITHVEKLCKGTAPFGVAFGNS  224
            LT+ITHV++LC GT+ F+VAFGNS
Sbjct  201  LTEITHVQNLCAGTGTFSVAFGNS  224

8) tcpA in NC_006841


> FJ209007|3|G3|218158644|ACK75621.1|Vibrio_cholerae_M1567|+|1746..2420|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  155 bits (572),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 94/195 (49%), Positives = 143/195 (74%), Gaps = 5/195 (2%)

Query  6    QRGMTLLEVIIVLGIMGVISAGVVILAQRAIDNQNVSKLSQALNTIQTAMVQTYRSKQSY  65
            Q GMTLLEVIIVLGIMGV+SAGVV LAQRAID+QN++K +Q LNTIQ ++ QTYRS  +Y
Sbjct  23   QEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLGNY  82

Query  66   PDVLQDAVKAKKLTDALVSMGRVTESDLINPFTGAPMLIFTAKDNKAANRGFAIKVSDLS  125
            P    DA  A  LT ++VS+G+++  +  NPFTG  + I +   N A+N++FAI V +L+
Sbjct  83   PAT-ADAAAAAALTSGMVSLGKISADEAKNPFTGNNLNIWSFPRNAAGNKAFAISVDGLT  141

Query  126  KDQCTSLISNSADLFSFIEVQNRGT-AMA--ADFYVDP-DATKSVGVIKSTKGGAKTLDL  181
            + QC +L+++ +D+F++I+VQ++++ A+A  +DF  +P +A  + G+IKS   G+  L+L
Sbjct  142  QAQCKTLVTSVGDMFPYINVQEKAAVALADLGDFETGPANAVTGKGIIKSIATGSVNLNL  201

Query  182  TNLDHISALCGGPGA  196
            T++ H+  LC+G G+
Sbjct  202  TEITHVQNLCAGTGT  216