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PAthogenisity Island DataBase (PAI DB)

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Homologs of tcpA gene of FJ209006

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

• Sequence Alignments

1) tcpA in NC_012582


> FJ209006|3|G3|218158638|ACK75616.1|Vibrio_cholerae_M1121|+|1756..2430|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  268 bits (1002),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 166/204 (82%), Positives = 190/204 (94%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LN++QV++TQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTVQVSMTQTYRALG  80

Query  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140
            NYPATA+ +AA+KLTSGLVSLGKISSDEAKNPF GTNMNIF+FPRN+A+NKAFAI+VDGL
Sbjct  81   NYPATANIAAATKLTSGLVSLGKISSDEAKNPFTGTNMNIFAFPRNGAPNKAFAIAVDGL  140

Query  141  TQAQCKTLITSVGDMFPYIAIKaggavaladlgdFENSAAAAETGVGVIKSIAPASKNLD  200
            TQAQCKTLITSVGDMFPY+ IK++G++ +ADL DFE + A A  GVGVIKSIAP++ NL 
Sbjct  141  TQAQCKTLITSVGDMFPYVLIKSAGTIDFADLTDFETTQAKAADGVGVIKSIAPGGTNLK  200

Query  201  LTNITHVEKLCKGTAPFGVAFGNS  224
            LT+I+HVE LC GTAPFGVAFGNS
Sbjct  201  LTEIAHVEALCTGTAPFGVAFGNS  224

2) tcpA in NC_009457


> FJ209006|3|G3|218158638|ACK75616.1|Vibrio_cholerae_M1121|+|1756..2430|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  268 bits (1002),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 166/204 (82%), Positives = 190/204 (94%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LN++QV++TQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTVQVSMTQTYRALG  80

Query  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140
            NYPATA+ +AA+KLTSGLVSLGKISSDEAKNPF GTNMNIF+FPRN+A+NKAFAI+VDGL
Sbjct  81   NYPATANIAAATKLTSGLVSLGKISSDEAKNPFTGTNMNIFAFPRNGAPNKAFAIAVDGL  140

Query  141  TQAQCKTLITSVGDMFPYIAIKaggavaladlgdFENSAAAAETGVGVIKSIAPASKNLD  200
            TQAQCKTLITSVGDMFPY+ IK++G++ +ADL DFE + A A  GVGVIKSIAP++ NL 
Sbjct  141  TQAQCKTLITSVGDMFPYVLIKSAGTIDFADLTDFETTQAKAADGVGVIKSIAPGGTNLK  200

Query  201  LTNITHVEKLCKGTAPFGVAFGNS  224
            LT+I+HVE LC GTAPFGVAFGNS
Sbjct  201  LTEIAHVEALCTGTAPFGVAFGNS  224

3) O3Y_03850 in NC_016944


> FJ209006|3|G3|218158638|ACK75616.1|Vibrio_cholerae_M1121|+|1756..2430|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  264 bits (986),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 161/204 (79%), Positives = 187/204 (92%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN+VQ++MTQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTVQVSMTQTYRALG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATAN  AAT+L++GLVSLGK+S+DEAKNPFTGT M IF+FPRN+A+NKAFAI+V+GL
Sbjct  81   NYPATANIAAATKLTSGLVSLGKISSDEAKNPFTGTNMNIFAFPRNGAPNKAFAIAVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTL+TSVGDMFP++ +K ++    ADL DFET+ A AA G GVIKSIAPG++NL+
Sbjct  141  TQAQCKTLITSVGDMFPYVLIKSAGTIDFADLTDFETTQAKAADGVGVIKSIAPGGTNLK  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+I+HVE LCTGTAPF VAFGNS
Sbjct  201  LTEIAHVEALCTGTAPFGVAFGNS  224

4) tcpA in NC_012578


> FJ209006|3|G3|218158638|ACK75616.1|Vibrio_cholerae_M1121|+|1756..2430|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  264 bits (986),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 161/204 (79%), Positives = 187/204 (92%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN+VQ++MTQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTVQVSMTQTYRALG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATAN  AAT+L++GLVSLGK+S+DEAKNPFTGT M IF+FPRN+A+NKAFAI+V+GL
Sbjct  81   NYPATANIAAATKLTSGLVSLGKISSDEAKNPFTGTNMNIFAFPRNGAPNKAFAIAVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTL+TSVGDMFP++ +K ++    ADL DFET+ A AA G GVIKSIAPG++NL+
Sbjct  141  TQAQCKTLITSVGDMFPYVLIKSAGTIDFADLTDFETTQAKAADGVGVIKSIAPGGTNLK  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+I+HVE LCTGTAPF VAFGNS
Sbjct  201  LTEIAHVEALCTGTAPFGVAFGNS  224

5) VCD_003500 in NC_012668


> FJ209006|3|G3|218158638|ACK75616.1|Vibrio_cholerae_M1121|+|1756..2430|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  264 bits (986),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 161/204 (79%), Positives = 187/204 (92%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN+VQ++MTQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTVQVSMTQTYRALG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATAN  AAT+L++GLVSLGK+S+DEAKNPFTGT M IF+FPRN+A+NKAFAI+V+GL
Sbjct  81   NYPATANIAAATKLTSGLVSLGKISSDEAKNPFTGTNMNIFAFPRNGAPNKAFAIAVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTL+TSVGDMFP++ +K ++    ADL DFET+ A AA G GVIKSIAPG++NL+
Sbjct  141  TQAQCKTLITSVGDMFPYVLIKSAGTIDFADLTDFETTQAKAADGVGVIKSIAPGGTNLK  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+I+HVE LCTGTAPF VAFGNS
Sbjct  201  LTEIAHVEALCTGTAPFGVAFGNS  224

6) VC0828 in NC_002505


> FJ209006|3|G3|218158638|ACK75616.1|Vibrio_cholerae_M1121|+|1756..2430|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  264 bits (986),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 161/204 (79%), Positives = 187/204 (92%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN+VQ++MTQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTVQVSMTQTYRALG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATAN  AAT+L++GLVSLGK+S+DEAKNPFTGT M IF+FPRN+A+NKAFAI+V+GL
Sbjct  81   NYPATANIAAATKLTSGLVSLGKISSDEAKNPFTGTNMNIFAFPRNGAPNKAFAIAVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTL+TSVGDMFP++ +K ++    ADL DFET+ A AA G GVIKSIAPG++NL+
Sbjct  141  TQAQCKTLITSVGDMFPYVLIKSAGTIDFADLTDFETTQAKAADGVGVIKSIAPGGTNLK  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+I+HVE LCTGTAPF VAFGNS
Sbjct  201  LTEIAHVEALCTGTAPFGVAFGNS  224

7) tcpA in NC_016445


> FJ209006|3|G3|218158638|ACK75616.1|Vibrio_cholerae_M1121|+|1756..2430|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  259 bits (967),  Expect = 8e-71, Method: Compositional matrix adjust.
 Identities = 161/204 (79%), Positives = 188/204 (93%), Gaps = 0/204 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN+VQ++MTQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTVQVSMTQTYRALG  80

Query  81   NYPatanasaatqlanGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            NYPATAN +AAT+L++GLVSLGK+S+DEAKNPFTGT M IF+FPRN+A+NKAFAI+V+GL
Sbjct  81   NYPATANIAAATKLTSGLVSLGKISSDEAKNPFTGTNMNIFAFPRNGAPNKAFAIAVDGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLN  200
            TQAQCKTL+TSVGDMFP++ +K ++    ADL DFET+ A AA G GVIKSIAPG++NL+
Sbjct  141  TQAQCKTLITSVGDMFPYVLIKSAGTIDFADLTDFETTQAKAADGVGVIKSIAPGGTNLK  200

Query  201  LTNITHVEKLCTGTAPFTVAFGNS  224
            LT+I+HVE LCTGTAPF VAFGNS
Sbjct  201  LTEIAHVEALCTGTAPFGVAFGNS  224

8) tcpA in NC_006841


> FJ209006|3|G3|218158638|ACK75616.1|Vibrio_cholerae_M1121|+|1756..2430|tcpA|-|toxin 
co-regulated pilin
Length=224

 Score =  161 bits (595),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 95/195 (49%), Positives = 141/195 (73%), Gaps = 5/195 (2%)

Query  6    QRGMTLLEVIIVLGIMGVISAGVVILAQRAIDNQNVSKLSQALNTIQTAMVQTYRSKQSY  65
            Q GMTLLEVIIVLGIMGV+SAGVV LAQRAID+QN++K +Q LNT+Q +M QTYR+  +Y
Sbjct  23   QEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTVQVSMTQTYRALGNY  82

Query  66   PDVLQDAVKAKKLTDALVSMGRVTESDLINPFTGAPMLIFTAKDNKAANRGFAIKVSDLS  125
            P    +   A KLT +LVS+G+++  +  NPFTG+ M IF+   N A+N++FAI V +L+
Sbjct  83   PAT-ANIAAATKLTSGLVSLGKISSDEAKNPFTGTNMNIFAFPRNGAPNKAFAIAVDGLT  141

Query  126  KDQCTSLISNSADLFSFIEVQNRGT---AMAADF-YVDPDATKSVGVIKSTKGGAKTLDL  181
            + QC +LI++ +D+F+++ +++ GT   A  +DF   ++ A+ +VGVIKS   G+  L L
Sbjct  142  QAQCKTLITSVGDMFPYVLIKSAGTIDFADLTDFETTQAKAADGVGVIKSIAPGGTNLKL  201

Query  182  TNLDHISALCGGPGA  196
            T++ H+ ALC G ++
Sbjct  202  TEIAHVEALCTGTAP  216