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PAthogenisity Island DataBase (PAI DB)

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Homologs of tcpA gene of FJ209004

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

• Sequence Alignments

1) O3Y_03850 in NC_016944


> FJ209004|3|G3|218158626|ACK75606.1|Vibrio_cholerae_M1098|+|1736..2413|tcpA|-|toxin 
co-regulated pilin
Length=225

 Score =  266 bits (993),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 165/205 (81%), Positives = 186/205 (91%), Gaps = 1/205 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+Q+A+TQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            +YP++A A  A++L+ GLVSLGK+S+DEAKNPFTG+ M IFSFPRNSAA+KAFAI+V GL
Sbjct  81   KYPTAAAAGDAAKLTAGLVSLGKISSDEAKNPFTGSDMNIFSFPRNSAADKAFAISVEGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFA-AVADLGDFETSVADAATGAGVIKSIAPGSANL  199
            TQAQCKTL+TSVGDMFP+I VK GA + AVADLGDFETS A AA G GVIKSIAP++ NL
Sbjct  141  TQAQCKTLITSVGDMFPYIAVKAGATSLAVADLGDFETSPAKAADGVGVIKSIAPAGVNL  200

Query  200  NLTNITHVEKLCTGTAPFTVAFGNS  224
            NLT ITHVEKLCTG APF VAFGNS
Sbjct  201  NLTTITHVEKLCTGDAPFIVAFGNS  225

2) tcpA in NC_012578


> FJ209004|3|G3|218158626|ACK75606.1|Vibrio_cholerae_M1098|+|1736..2413|tcpA|-|toxin 
co-regulated pilin
Length=225

 Score =  266 bits (993),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 165/205 (81%), Positives = 186/205 (91%), Gaps = 1/205 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+Q+A+TQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            +YP++A A  A++L+ GLVSLGK+S+DEAKNPFTG+ M IFSFPRNSAA+KAFAI+V GL
Sbjct  81   KYPTAAAAGDAAKLTAGLVSLGKISSDEAKNPFTGSDMNIFSFPRNSAADKAFAISVEGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFA-AVADLGDFETSVADAATGAGVIKSIAPGSANL  199
            TQAQCKTL+TSVGDMFP+I VK GA + AVADLGDFETS A AA G GVIKSIAP++ NL
Sbjct  141  TQAQCKTLITSVGDMFPYIAVKAGATSLAVADLGDFETSPAKAADGVGVIKSIAPAGVNL  200

Query  200  NLTNITHVEKLCTGTAPFTVAFGNS  224
            NLT ITHVEKLCTG APF VAFGNS
Sbjct  201  NLTTITHVEKLCTGDAPFIVAFGNS  225

3) VCD_003500 in NC_012668


> FJ209004|3|G3|218158626|ACK75606.1|Vibrio_cholerae_M1098|+|1736..2413|tcpA|-|toxin 
co-regulated pilin
Length=225

 Score =  266 bits (993),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 165/205 (81%), Positives = 186/205 (91%), Gaps = 1/205 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+Q+A+TQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            +YP++A A  A++L+ GLVSLGK+S+DEAKNPFTG+ M IFSFPRNSAA+KAFAI+V GL
Sbjct  81   KYPTAAAAGDAAKLTAGLVSLGKISSDEAKNPFTGSDMNIFSFPRNSAADKAFAISVEGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFA-AVADLGDFETSVADAATGAGVIKSIAPGSANL  199
            TQAQCKTL+TSVGDMFP+I VK GA + AVADLGDFETS A AA G GVIKSIAP++ NL
Sbjct  141  TQAQCKTLITSVGDMFPYIAVKAGATSLAVADLGDFETSPAKAADGVGVIKSIAPAGVNL  200

Query  200  NLTNITHVEKLCTGTAPFTVAFGNS  224
            NLT ITHVEKLCTG APF VAFGNS
Sbjct  201  NLTTITHVEKLCTGDAPFIVAFGNS  225

4) VC0828 in NC_002505


> FJ209004|3|G3|218158626|ACK75606.1|Vibrio_cholerae_M1098|+|1736..2413|tcpA|-|toxin 
co-regulated pilin
Length=225

 Score =  266 bits (993),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 165/205 (81%), Positives = 186/205 (91%), Gaps = 1/205 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+Q+A+TQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80

Query  81   NYPatananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            +YP++A A  A++L+ GLVSLGK+S+DEAKNPFTG+ M IFSFPRNSAA+KAFAI+V GL
Sbjct  81   KYPTAAAAGDAAKLTAGLVSLGKISSDEAKNPFTGSDMNIFSFPRNSAADKAFAISVEGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFA-AVADLGDFETSVADAATGAGVIKSIAPGSANL  199
            TQAQCKTL+TSVGDMFP+I VK GA + AVADLGDFETS A AA G GVIKSIAP++ NL
Sbjct  141  TQAQCKTLITSVGDMFPYIAVKAGATSLAVADLGDFETSPAKAADGVGVIKSIAPAGVNL  200

Query  200  NLTNITHVEKLCTGTAPFTVAFGNS  224
            NLT ITHVEKLCTG APF VAFGNS
Sbjct  201  NLTTITHVEKLCTGDAPFIVAFGNS  225

5) tcpA in NC_012582


> FJ209004|3|G3|218158626|ACK75606.1|Vibrio_cholerae_M1098|+|1736..2413|tcpA|-|toxin 
co-regulated pilin
Length=225

 Score =  262 bits (979),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 173/205 (85%), Positives = 190/205 (93%), Gaps = 1/205 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80

Query  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140
            +YP++A A  A+KLT+GLVSLGKISSDEAKNPF G++MNIFSFPRN+AA+KAFAISV+GL
Sbjct  81   KYPTAAAAGDAAKLTAGLVSLGKISSDEAKNPFTGSDMNIFSFPRNSAADKAFAISVEGL  140

Query  141  TQAQCKTLITSVGDMFPYIAIKaggav-aladlgdFENSAAAAETGVGVIKSIAPASKNL  199
            TQAQCKTLITSVGDMFPYIA+KAG++  A+ADLGDFE S+A A  GVGVIKSIAPA+ NL
Sbjct  141  TQAQCKTLITSVGDMFPYIAVKAGATSLAVADLGDFETSPAKAADGVGVIKSIAPAGVNL  200

Query  200  DLTNITHVEKLCKGTAPFGVAFGNS  224
            +LT ITHVEKLC G APF VAFGNS
Sbjct  201  NLTTITHVEKLCTGDAPFIVAFGNS  225

6) tcpA in NC_009457


> FJ209004|3|G3|218158626|ACK75606.1|Vibrio_cholerae_M1098|+|1736..2413|tcpA|-|toxin 
co-regulated pilin
Length=225

 Score =  262 bits (979),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 173/205 (85%), Positives = 190/205 (93%), Gaps = 1/205 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80

Query  81   NYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGL  140
            +YP++A A  A+KLT+GLVSLGKISSDEAKNPF G++MNIFSFPRN+AA+KAFAISV+GL
Sbjct  81   KYPTAAAAGDAAKLTAGLVSLGKISSDEAKNPFTGSDMNIFSFPRNSAADKAFAISVEGL  140

Query  141  TQAQCKTLITSVGDMFPYIAIKaggav-aladlgdFENSAAAAETGVGVIKSIAPASKNL  199
            TQAQCKTLITSVGDMFPYIA+KAG++  A+ADLGDFE S+A A  GVGVIKSIAPA+ NL
Sbjct  141  TQAQCKTLITSVGDMFPYIAVKAGATSLAVADLGDFETSPAKAADGVGVIKSIAPAGVNL  200

Query  200  DLTNITHVEKLCKGTAPFGVAFGNS  224
            +LT ITHVEKLC G APF VAFGNS
Sbjct  201  NLTTITHVEKLCTGDAPFIVAFGNS  225

7) tcpA in NC_016445


> FJ209004|3|G3|218158626|ACK75606.1|Vibrio_cholerae_M1098|+|1736..2413|tcpA|-|toxin 
co-regulated pilin
Length=225

 Score =  261 bits (975),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 165/205 (81%), Positives = 187/205 (92%), Gaps = 1/205 (0%)

Query  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLG  80
            TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+Q+A+TQTYR+LG
Sbjct  21   TGQEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLG  80

Query  81   NYPatanasaatqlanGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGL  140
            +YP++A A+ A++L+ GLVSLGK+S+DEAKNPFTG+ M IFSFPRNSAA+KAFAI+V GL
Sbjct  81   KYPTAAAAGDAAKLTAGLVSLGKISSDEAKNPFTGSDMNIFSFPRNSAADKAFAISVEGL  140

Query  141  TQAQCKTLVTSVGDMFPFINVKEGAFA-AVADLGDFETSVADAATGAGVIKSIAPGSANL  199
            TQAQCKTL+TSVGDMFP+I VK GA + AVADLGDFETS A AA G GVIKSIAP++ NL
Sbjct  141  TQAQCKTLITSVGDMFPYIAVKAGATSLAVADLGDFETSPAKAADGVGVIKSIAPAGVNL  200

Query  200  NLTNITHVEKLCTGTAPFTVAFGNS  224
            NLT ITHVEKLCTG APF VAFGNS
Sbjct  201  NLTTITHVEKLCTGDAPFIVAFGNS  225

8) tcpA in NC_006841


> FJ209004|3|G3|218158626|ACK75606.1|Vibrio_cholerae_M1098|+|1736..2413|tcpA|-|toxin 
co-regulated pilin
Length=225

 Score =  158 bits (583),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 96/196 (49%), Positives = 140/196 (72%), Gaps = 6/196 (3%)

Query  6    QRGMTLLEVIIVLGIMGVISAGVVILAQRAIDNQNVSKLSQALNTIQTAMVQTYRSKQSY  65
            Q GMTLLEVIIVLGIMGV+SAGVV LAQRAID+QN++K +Q+LN+IQ A+ QTYR+   Y
Sbjct  23   QEGMTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGKY  82

Query  66   PDVLQDAVKAKKLTDALVSMGRVTESDLINPFTGAPMLIFTAKDNKAANRGFAIKVSDLS  125
            P     A  A KLT +LVS+G+++  +  NPFTG+ M IF+   N AA+++FAI V +L+
Sbjct  83   PTA-AAAGDAAKLTAGLVSLGKISSDEAKNPFTGSDMNIFSFPRNSAADKAFAISVEGLT  141

Query  126  KDQCTSLISNSADLFSFIEVQNRGTAMA----ADFYVDPD-ATKSVGVIKSTKGGAKTLD  180
            + QC +LI++ +D+F++I V+  +T++A    +DF   P  A+ +VGVIKS   ++  L+
Sbjct  142  QAQCKTLITSVGDMFPYIAVKAGATSLAVADLGDFETSPAKAADGVGVIKSIAPAGVNLN  201

Query  181  LTNLDHISALCGGPGA  196
            LT + H+  LC G ++
Sbjct  202  LTTITHVEKLCTGDAP  217