Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of ccrB2 gene of BK001539

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SE0036
( NP_763591.1 )

cassette chromosome recombinase B

NC_004461
(Staphylococcus epidermidis ATCC 12228)

0.0

100

2) BN843_700
( YP_007867149.1 )

Cassette chromosome recombinase B

NC_021059
(Staphylococcus aureus M1)

0.0

3) ccrB
( YP_005740811.1 )

Cassette chromosome recombinase B

NC_017340
(Staphylococcus aureus 04-02981)

0.0

4) MS7_0069
( YP_005756536.1 )

resolvase, N terminal domain protein

NC_017351
(Staphylococcus aureus 11819-97)

0.0

5) SAKOR_00047
( YP_008490231.1 )

Site-specific recombinase

NC_022226
(Staphylococcus aureus CN1)

0.0

6) ccrB
( YP_492757.1 )

cassette chromosome recombinase B

NC_007793
(Staphylococcus aureus FPR3757)

0.0

7) ccrB
( YP_006236413.1 )

site-specific recombinase

NC_017763
(Staphylococcus aureus HO 5096 0412)

0.0

8) ccrB
( YP_005738212.1 )

cassette chromosome recombinase B

NC_017338
(Staphylococcus aureus JKD6159)

0.0

9) SAMSHR1132_00400
( YP_005324563.1 )

site-specific recombinase

NC_016941
(Staphylococcus aureus MSHR1132)

0.0

10) ccrB
( YP_001440650.1 )

cassette chromosome recombinase B

NC_009782
(Staphylococcus aureus Mu3)

0.0

11) ccrB
( NP_370585.1 )

cassette chromosome recombinase B

NC_002758
(Staphylococcus aureus Mu50)

0.0

12) ccrB
( NP_373297.1 )

cassette chromosome recombinase B

NC_002745
(Staphylococcus aureus N315)

0.0

13) ccrB
( YP_001573963.1 )

cassette chromosome recombinase B

NC_010079
(Staphylococcus aureus TCH1516)

0.0

14) ccrB
( YP_039530.1 )

site-specific recombinase

NC_002952
(Staphylococcus aureus MRSA252)

0.0

15) SERP2499
( YP_190041.1 )

cassette chromosome recombinase B

NC_002976
(Staphylococcus epidermidis RP62A)

0.0

16) ccrB
( YP_005746510.1 )

site-specific recombinase

NC_017342
(Staphylococcus aureus TCH60)

0.0

17) SaurJH1_0049
( YP_001315202.1 )

resolvase domain-containing protein

NC_009632
(Staphylococcus aureus JH1)

0.0

18) SaurJH9_0048
( YP_001245436.1 )

resolvase

NC_009487
(Staphylococcus aureus JH9)

0.0

19) ccrB
( NP_644853.1 )

cassette chromosome recombinase B

NC_003923
(Staphylococcus aureus MW2)

0.0

20) ccrB
( YP_008586687.1 )

cassette chromosome recombinase B

NC_022443
(Staphylococcus aureus SA40)

0.0

21) CA347_58
( YP_008126942.1 )

ogr/Delta-like zinc finger family protein

NC_021554
(Staphylococcus aureus CA-347)

0.0

22) ccrB
( YP_008167247.1 )

cassette chromosome recombinase B

NC_021670
(Staphylococcus aureus Bmb9393)

0.0

23) ccrB
( YP_005743456.1 )

cassette chromosome recombinase B

NC_017341
(Staphylococcus aureus JKD6008)

0.0

24) dnaC
( YP_005751353.1 )

Cassette chromosome recombinase B3

NC_017347
(Staphylococcus aureus T0131)

0.0

25) ccrB
( YP_005730115.1 )

site-specific recombinase CcrB

NC_017331
(Staphylococcus aureus TW20)

0.0

26) ccrB3
( YP_005754051.1 )

site-specific recombinase CcrB3

NC_017349
(Staphylococcus aureus LGA251)

0.0

27) SSP0035
( YP_300125.1 )

cassette chromosome recombinase B

NC_007350
(Staphylococcus saprophyticus ATCC 15305)

0.0

28) BN843_340
( YP_007867113.1 )

Cassette chromosome recombinase B

NC_021059
(Staphylococcus aureus M1)

0.0

29) ccrB
( YP_042165.1 )

site-specific recombinase

NC_002953
(Staphylococcus aureus MSSA476)

0.0

30) SE0056
( NP_763611.1 )

cassette chromosome recombinase B

NC_004461
(Staphylococcus epidermidis ATCC 12228)

0.0

31) BACI_c54540
( YP_003795137.1 )

DNA integration/recombination/invertion protein

NC_014335
(Bacillus cereus CI)

4e-80

32) Bsph_4747
( YP_001700321.1 )

DNA recombinase

NC_010382
(Lysinibacillus sphaericus C3-41)

2e-78

33) CLOST_2517
( YP_003937537.1 )

site-specific DNA recombinase (modular protein)

NC_014614
(Clostridium sticklandii DSM 519)

1e-77

• Sequence Alignments

1) SE0036 in NC_004461


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  886 bits (3354),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 542/542 (100%), Positives = 542/542 (100%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480
            SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540
            ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

2) BN843_700 in NC_021059


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  833 bits (3154),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 502/542 (93%), Positives = 529/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVARVNQENKVDGAALHHDIAYKQQQYDEVQTKLNNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVVARVNQEN+VD A+LHHDIAYKQQQYDEV+ KLNNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKSLFDAKQISKLLQHIFQDIKHMEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDK+ ++AK+I+K+L+ +F++I  M KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRINIRKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRI+IRKD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

3) ccrB in NC_017340


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  829 bits (3137),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/542 (93%), Positives = 528/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDAKEG IDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IKLNNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDKP ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

4) MS7_0069 in NC_017351


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  829 bits (3138),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/542 (93%), Positives = 527/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQRMLKDAKEGNIDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IK+NNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDK  ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

5) SAKOR_00047 in NC_022226


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  829 bits (3138),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/542 (93%), Positives = 527/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQRMLKDAKEGNIDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IK+NNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDK  ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

6) ccrB in NC_017763


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  829 bits (3138),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/542 (93%), Positives = 527/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQRMLKDAKEGNIDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IK+NNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDK  ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

7) ccrB in NC_017338


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  829 bits (3138),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/542 (93%), Positives = 527/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQRMLKDAKEGNIDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IK+NNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDK  ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

8) SAMSHR1132_00400 in NC_016941


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  829 bits (3138),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/542 (93%), Positives = 527/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQRMLKDAKEGNIDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IK+NNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDK  ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

9) ccrB in NC_009782


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  829 bits (3137),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/542 (93%), Positives = 528/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDAKEG IDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IKLNNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDKP ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

10) ccrB in NC_002758


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  829 bits (3137),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/542 (93%), Positives = 528/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDAKEG IDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IKLNNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDKP ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

11) ccrB in NC_002745


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  829 bits (3137),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/542 (93%), Positives = 528/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDAKEG IDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IKLNNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDKP ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

12) ccrB in NC_007793


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  829 bits (3138),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/542 (93%), Positives = 527/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQRMLKDAKEGNIDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IK+NNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDK  ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

13) ccrB in NC_010079


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  829 bits (3138),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/542 (93%), Positives = 527/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQRMLKDAKEGNIDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IK+NNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDK  ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

14) ccrB in NC_002952


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  829 bits (3137),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/542 (92%), Positives = 528/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRILKDAKDGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDAK+G IDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IKLNNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDKP ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

15) SERP2499 in NC_002976


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  829 bits (3137),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/542 (92%), Positives = 528/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRILKDAKDGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDAK+G IDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IKLNNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDKP ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

16) ccrB in NC_017342


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  828 bits (3133),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/542 (93%), Positives = 527/542 (98%), Gaps = 0/542 (0%)

Query  8    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  67
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  68   RPELQRMLKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  127
            RPELQRMLKDAKEGNIDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  128  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  187
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  188  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  247
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  248  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  307
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  308  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  367
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  368  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  427
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IK+NNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  428  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  487
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDK  ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  488  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  547
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  548  TI  549
            TI
Sbjct  541  TI  542

17) SaurJH1_0049 in NC_009632


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  828 bits (3135),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/542 (92%), Positives = 528/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEINTS  120
            RPELQR+LKDAKEG IDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERME+NTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IKLNNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDKP ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

18) SaurJH9_0048 in NC_009487


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  828 bits (3135),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/542 (92%), Positives = 528/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEINTS  120
            RPELQR+LKDAKEG IDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERME+NTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IKLNNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI +QINQLK+QQNEDKP ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

19) ccrB in NC_003923


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  828 bits (3135),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/542 (92%), Positives = 527/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRILKDAKDGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDAK+G IDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRANVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRA+VIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKIIERVVARVNQENQVDCASLHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLT  420
            LEIVKSDK+I+RVVARVNQENQVDCASLHHDIAYKQQQYDEV+IKLNNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDITYQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDI  QINQLK+QQNEDK  ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

20) ccrB in NC_022443


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  827 bits (3130),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/542 (92%), Positives = 528/542 (98%), Gaps = 0/542 (0%)

Query  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRILKDAKEGNIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDAKEGNIDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFE YAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHHDIAYKQQQYDEV+IK+NNLIKTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVIRPSIQKYEKQLNDIMNQINQFKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK  480
            SVIRPSIQKY+KQLNDIM+QINQ+K+QQNEDK  ++AK I+K+L+ +FH+I  + KS+LK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLTVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL  540
            ALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +YL
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  TI  542
            TI
Sbjct  541  TI  542

21) CA347_58 in NC_021554


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  820 bits (3106),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 496/543 (92%), Positives = 526/543 (97%), Gaps = 1/543 (0%)

Query  1    MQQLKTKRVGIYVRVSTKMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMN  60
            MQQLKTKRVGIYVRVST MQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RPELQR+LKDAKEG IDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIP+SKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII  300
            YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIQRVVTHVNQENQVDGAALHHIVVAYKQQQYDEVQIKLNNLIKTIEDNPDL  420
            LEIVKSDKVIQRVV++VNQENQVD A+LHH  +AYKQQQYDEV+IKLNNLIKTIEDNPDL
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHH-DIAYKQQQYDEVRIKLNNLIKTIEDNPDL  419

Query  421  TSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRL  480
            TSVIRPSIQKY+KQLNDI +QINQLK+QQNEDKP ++AK I+K+L+ +FH+I  + KS+L
Sbjct  420  TSVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQL  479

Query  481  KALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLY  540
            KALYL+VIDRIDI+KD+NHKKQFYVTLKL+NE+IKQ+FN+  LDEV LSTSSLFLPQ +Y
Sbjct  480  KALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFY  539

Query  541  LTI  543
            LTI
Sbjct  540  LTI  542

22) ccrB in NC_021670


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  776 bits (2937),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 462/542 (86%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+ID VM+YKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420
            LEIVKSDKVI++V+ RVNQEN+VD ++L+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SALKATIHQYETQLNDITnqmnqlkqqqnqEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480
            S ++++I++Y+ QLNDI +Q+NQLK+QQN++K SY++K+I+ +L+ +F+NIE M K+QLK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTLFL  540
            ALYL+VIDRIDIRKD+NHKKQFYVTLKL+NE+IKQ+FN+ PLDEVLLSTSSLFLPQ ++L
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  QI  542
             I
Sbjct  541  TI  542

23) ccrB in NC_017341


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  776 bits (2937),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 462/542 (86%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+ID VM+YKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420
            LEIVKSDKVI++V+ RVNQEN+VD ++L+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SALKATIHQYETQLNDITnqmnqlkqqqnqEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480
            S ++++I++Y+ QLNDI +Q+NQLK+QQN++K SY++K+I+ +L+ +F+NIE M K+QLK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTLFL  540
            ALYL+VIDRIDIRKD+NHKKQFYVTLKL+NE+IKQ+FN+ PLDEVLLSTSSLFLPQ ++L
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  QI  542
             I
Sbjct  541  TI  542

24) dnaC in NC_017347


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  776 bits (2937),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 462/542 (86%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+ID VM+YKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420
            LEIVKSDKVI++V+ RVNQEN+VD ++L+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SALKATIHQYETQLNDITnqmnqlkqqqnqEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480
            S ++++I++Y+ QLNDI +Q+NQLK+QQN++K SY++K+I+ +L+ +F+NIE M K+QLK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTLFL  540
            ALYL+VIDRIDIRKD+NHKKQFYVTLKL+NE+IKQ+FN+ PLDEVLLSTSSLFLPQ ++L
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  QI  542
             I
Sbjct  541  TI  542

25) ccrB in NC_017331


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  776 bits (2937),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 462/542 (86%), Positives = 519/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTE+QSTEGYSIDGQINQI+EYCDF++F V D+YADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+ID VM+YKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSI+S+TYIL+NPFY+GKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIV  300
            YKDW+EKRRKGLNDKP+IAEGKHSPII QDLW+KVQ+RKKQVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYDEVSGKLHNLVKTIEDNPDLT  420
            LEIVKSDKVI++V+ RVNQEN+VD ++L+HDIAYKQQQYDEV  KL+NL+KTIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SALKATIHQYETQLNDITnqmnqlkqqqnqEKLSYDTKQIAALLQRIFQNIESMDKAQLK  480
            S ++++I++Y+ QLNDI +Q+NQLK+QQN++K SY++K+I+ +L+ +F+NIE M K+QLK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTLFL  540
            ALYL+VIDRIDIRKD+NHKKQFYVTLKL+NE+IKQ+FN+ PLDEVLLSTSSLFLPQ ++L
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  QI  542
             I
Sbjct  541  TI  542

26) ccrB3 in NC_017349


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  769 bits (2909),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/542 (85%), Positives = 517/542 (96%), Gaps = 0/542 (0%)

Query  1    MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCNFNNFAVVDVYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTEMQSTEGYSIDGQINQI+EYC+F++F V D+YADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPELQRLLKDANEGQIDCVMVYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTS  120
            RPELQR+LKDA+EG+IDCVM+YKTNRLARNTSDLLKIVEDLH+QNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180
            SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYITKKGKPFSISSITYILSNPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGY+TKKGKPFSISSITYIL+NPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWNEKRRKGLNDKPIIADGKHSPIISQDLWDKVQARKQQVSQKPQVHGKGTNLLTGIV  300
            YKDW+EKRRKGLNDKP+IA+GKHSPII+QDLW+KVQ RK+QVSQKPQVHGKGTNLLTGI+
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSIRADVIEKYVMDQI  360
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANS+RADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  REIVKSDTviqqvvervnqenqvdvAALNHDIAYKQQQFDEVNAKIKNLVQTIDDNPDLT  420
             EIVKSD VIQ+VV RVNQENQVD A+L+HDIAYKQQQ+DEV  K++NL++TI+DNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SAIKPTIHQYEAQLNDITNQMNQLKHQQNQEKPSYDSKQIAVLLQRIFQNITSMDKTQLK  480
            S I+P+I++Y+ QLNDI +Q+NQLK QQN++KPSY++K+I+ +L+ +F+NI  M K+QLK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLTVIDRIDIRKDGDHKKQFYVTLKLNNEIIKQLFNNTALDEVLLSTSSLFLPQTLYF  540
            ALYL+VIDRIDIRKD++HKKQFYVTLKL+NE+IKQ+FN+ +LDEVLLSTSSLFLPQ +Y+
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  QI  542
             I
Sbjct  541  TI  542

27) SSP0035 in NC_007350


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  764 bits (2890),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 450/542 (84%), Positives = 513/542 (95%), Gaps = 0/542 (0%)

Query  1    MQQLKQKRVGIYVRVSTEMQSAEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMN  60
            MQQLK KRVGIYVRVSTEMQS+EGYSIDGQINQIKEYC+FHHFEVKDIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  61   RPALQRMLHDANKGHIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120
            RP LQRML DA+ G+IDCVM+YKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  121  SGKLMLQILASFSEFERNTILENIYTGQHQRALEGYYQGNLPLGYNNIPDNKKDLMINQH  180
            SGKLMLQILASFSEFERN I+EN++ GQ +RA EGYYQGNLPLGY++IPD+K +LMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAK  240
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKG+PFSIS++TYIL+NPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  241  YKDWNDKRRKGLNDKPVIAEGKHAPIIGKDLWDKVQARKKQVSEKPQVHGKGTNILTGLI  300
            YKDW++KRRKGLNDKPVIAEGKH+PII +DLW+KVQ RKKQVS+KPQVHGKGTN+LTG+I
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  301  SCPQCSASMSASTTVNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  360
             CPQC+A+M+AS T NTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  361  LEIVKSDKVIKQVVERVNQEHQIDMAALNHDIAYKQQQYDEVQIKLDNLIKTLEDNPDLT  420
            LEIVKSDKVI++VV RVNQE+Q+D A+L+HDIAYKQQQYDEV+IKL+NLIKT+EDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  421  SVLKNTIHQYEKQLNDittqinqlkqqqnqEKPSYDTKQIAALLQQIFQNVESMDKVQLK  480
            SV++ +I++Y+KQLNDI +QINQLK+QQN++KPSY++K+I+ +L+ +F+N+E M K QLK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  481  ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLFL  540
            ALYL+VIDRIDIRKD+NHKKQFYVTLKL+NE+IKQ+FND PLDEVLLSTSSLFLPQ ++L
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  541  QI  542
             I
Sbjct  541  TI  542

28) BN843_340 in NC_021059


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  708 bits (2677),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 389/542 (72%), Positives = 492/542 (91%), Gaps = 1/542 (0%)

Query  1    MKQLKKKRIGLYARVSTEMQ-TDGYSIQGQLNQLTEYCQFQGYEVVNEYTDRGISGKTMQ  59
            M+QLK KR+G+Y RVSTEMQ T+GYSI+GQ+NQ+ EYC+F+ +EV + Y+DRGISGK M+
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  60   RPELQRMLKDANEGKLDCIMVYKTNRLARNTSDLLNIVEELYKINVEFFSLTEKIEIASS  119
            RPELQRMLKDA+EG++DC+M+YKTNRLARNTSDLL+IVE+L K NVEFFSL+E++E+ +S
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  120  TGKLMLQILASFAEFERNTIVENVYNGQRQRAIEGYYQGNLPLGYDKVPDSKKELMINQH  179
            +GKLMLQILASF+EFERN IVENV+ GQ +RA EGYYQGNLPLGYDK+PDSK ELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  180  EANIVKYIFDSYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYIISNPFYIGKIQFAK  239
            EANIVKYIF+SYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYI++NPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  240  YRHWSDKRRKGLNEEPIIADGKHAPIIDRNLWDKVQFKRQESRKKPQVHGKGTNLLTGIV  299
            Y++WS+KRRKGLN+ P+IA+GKH+PII+++LW+KVQ+++++  +KPQVHGKGTNLLTGI+
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  300  KCPKCGAAMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVLEKYVMDQI  359
             CP+CGA+MAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADV+E YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  360  LEIIKSKKVLKQLVEKVNEKSQIDVSSLNHDIAYKQSQCEEIKAKMHTLTKTIEDSPDLD  419
            LEI+KS KV++++V +VN+ +Q+D +SL+HDIAYKQ Q +E++ K++ L KTIED+PDL 
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  420  SVLKPTILSYQDELNQINNQIYQLEQDKQAEAPHYDADMIANVLQAIFKDIDKLEKSQLK  479
            SV++P+I  Y+ +LN+I +QI QL ++++ + P Y+A  I+++L+ +F +I+K+ KSQLK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  480  SLYLTIIDRIDIRKDEHHKKQFYVTLKLNNDIIKQLFNNHPLDEVLPSTSSLFLPQTLYI  539
            +LYL++IDRIDIRKD +HKKQFYVTLKL+N++IKQ+FN+ PLDEVL STSSLFLPQ +Y+
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  540  TI  541
            TI
Sbjct  541  TI  542

29) ccrB in NC_002953


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  707 bits (2674),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 432/542 (80%), Positives = 504/542 (93%), Gaps = 1/542 (0%)

Query  1    MDKMKKKLVGGYIRVSTERQ-VEGYSIEGQITQIEQYCQFNGYELVDIYADRGISGKSMN  59
            M+++K K VG Y+RVSTE Q  EGYSI+GQI QI +YC+F+ +E+ DIYADRGISGK MN
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  60   RPELQRMLNDAKNGKLDCVMVYKTNRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNS  119
            RPELQRML+DAK+G++DCVM+YKTNRLARNTSDLL IVE+LH+QNVEFFSLSERMEV+ S
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  120  TGKLMLQILASFSEFERNTILENIYNGQHQRALKGYYQGNLPLGYNNIPDNKKELMINQH  179
            +GKLMLQILASFSEFERN I+EN++ GQ +RA  GYYQGNLPLGY++IPD+K ELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  180  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSINSITYILVNPFYIGKIQFAK  239
            EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKG+PFSI+SITYIL NPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  240  YKDWNEKRRKGLNDKPIIADGKHPPIISQELWDkvqsrkkqvsqkpqvHGKGTNLLTGII  299
            YKDW+EKRRKGLNDKP+IA+GKH+PII+Q+LW+KVQ RKKQVSQKPQVHGKGTNLLTGII
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  300  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQI  359
            HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIE YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  360  LEIVKSDKVLKQVVERVNQDNQVDVAALNHDIAYKQQQFDEVNIKLKNLVQTIEDNPDLT  419
            LEIVKSDKV+++VV RVNQ+NQVD A+L+HDIAYKQQQ+DEV IKL+NL++TIEDNPDLT
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  420  SALKPTIHQYETKLNDITnqmnqlkqqqnqEKPSYDTKQIAALLQRIFQNIESMDKSQLK  479
            S ++P+I++Y+ +LNDI +Q+NQLK+QQN++KPSY++K+I+ +L+ +F+NIE M KSQLK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  480  ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYF  539
            ALYL+VIDRIDIRKD NHKKQFYVTLKL+NE+IKQ+FN+  LDEVLLSTSSLFLPQ +Y+
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  540  QI  541
             I
Sbjct  541  TI  542

30) SE0056 in NC_004461


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  707 bits (2675),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 388/542 (72%), Positives = 491/542 (91%), Gaps = 1/542 (0%)

Query  1    MKQLKKKRIGLYARVSTEMQ-TDGYSIQGQLNQLTEYCQFQGYEVVNEYTDRGISGKTMQ  59
            M+QLK KR+G+Y RVSTEMQ T+GYSI+GQ+NQ+ EYC+F+ +EV + Y+DRGISGK M+
Sbjct  1    MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN  60

Query  60   RPELQRMLKDANEGKLDCIMVYKTNRLARNTSDLLNIVEELYKINVEFFSLTEKIEIASS  119
            RPELQRMLKDA+EG++DC+M+YKTNRLARNTSDLL+IVE+L K NVEFFSL+E++E+ +S
Sbjct  61   RPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS  120

Query  120  TGKLMLQILASFAEFERNTIVENVYNGQRQRAIEGYYQGNLPLGYDKVPDSKKELMINQH  179
            +GKLMLQILASF+EFERN IVENV+ GQ +RA EGYYQGNLPLGYDK+PDSK ELMINQH
Sbjct  121  SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQH  180

Query  180  EANIVKYIFDSYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYIISNPFYIGKIQFAK  239
            EANIVKYIF+SYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYI++NPFYIGKIQFAK
Sbjct  181  EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK  240

Query  240  YRHWSDKRRKGLNEEPIIADGKHAPIIDRNLWDKVQFKRQESRKKPQVHGKGTNLLTGIV  299
            Y++WS+KRRKGLN+ P+IA+GKH+PII+++LW+KVQ+++++  +KPQVHGKGTNLLTGI+
Sbjct  241  YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGII  300

Query  300  KCPKCGAAMEASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVLEKYVMDQI  359
             CP+CGA+M ASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADV+E YVM QI
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  360  LEIIKSKKVLKQLVEKVNEKSQIDVSSLNHDIAYKQSQCEEIKAKMHTLTKTIEDSPDLD  419
            LEI+KS KV++++V +VN+ +Q+D +SL+HDIAYKQ Q +E++ K++ L KTIED+PDL 
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLT  420

Query  420  SVLKPTILSYQDELNQINNQIYQLEQDKQAEAPHYDADMIANVLQAIFKDIDKLEKSQLK  479
            SV++P+I  Y+ +LN+I +QI QL ++++ + P Y+A  I+++L+ +F +I+K+ KSQLK
Sbjct  421  SVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLK  480

Query  480  SLYLTIIDRIDIRKDEHHKKQFYVTLKLNNDIIKQLFNNHPLDEVLPSTSSLFLPQTLYI  539
            +LYL++IDRIDIRKD +HKKQFYVTLKL+N++IKQ+FN+ PLDEVL STSSLFLPQ +Y+
Sbjct  481  ALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYL  540

Query  540  TI  541
            TI
Sbjct  541  TI  542

31) BACI_c54540 in NC_014335


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  292 bits (1092),  Expect = 4e-80, Method: Compositional matrix adjust.
 Identities = 191/410 (47%), Positives = 287/410 (70%), Gaps = 8/410 (1%)

Query  3    QVVIYARVSTAEQAEEGYSIDAQLDVVKKRCEQEGRIVVDNYVDRGISGKAMGNRAELQR  62
            +V IY RVST  Q+ EGYSID+Q++ +K  C+ +   V D Y DRGISGK M NR+ELQR
Sbjct  8    RVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFM-NRPELQR  66

Query  63   LLRDAGENKFQEIWVWKTNRLARNHLDLLKIVDELNKNNVGFKSCSEAFDTATPTGKLLM  122
            +L+DA E +++ + + KTNRLARN  DLLKIV++L+K+NV F S SE  +  T++GKL++
Sbjct  67   MLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLML  126

Query  123  NVLASIGEFERESIVENVKMGMKQRAREGKWNGGIVLGYNTVKIDKTENKTKLEVEEKEA  182
            ++LAS++EFER++IVENV MG  +RA+EG  +G + LGY+ +     ++K  L +++ EA
Sbjct  127  QILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKI----PDSKHELMINQHEA  182

Query  183  YIVKEIFKLYAEGRGLKAITNLVNKLGYRTKRGNFFTPIAIRTILLNPIYIGKIRYNVRE  242
             IVK IF  YA G+G + I+N +N  GY TK+G+ F+  +I  IL NP+YIGKI++    
Sbjct  183  NIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAKYK  242

Query  243  NWSEKRRKGINENPIYTNGNHDPIISLDLWNRVQELYKKKSQKPKRLFDGTFPLTGLIKC  302
            +WSEKRRKG+N++P+ ++G+H PII+ DLWN+VQ   K+ SQKP+    GT  LTG+I C
Sbjct  243  DWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGIIHC  302

Query  303  PMCGASMVAGRVKRKLKDGNINIIRYYQCGAWRNKGTAACRSNGVRADKIEKQVFKRINQ  362
            P CGA+M A+     LKDG  + IRYY C+  RNKG+  C +N+VRAD IE  V K+I +
Sbjct  303  PQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILE  362

Query  363  IVLNDKILKDTVSKLNDNTHNKIKPLEEALNITNKKIQNFEKKKSRIFDL  412
            IV +DK+++  V+++N++ +    +L++ +     K Q+++  + ++ +L
Sbjct  363  IVKSDKVIQRVVARVNQENQVDCASLHHDIAY---KQQQYDEVRIKLNNL  409

32) Bsph_4747 in NC_010382


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  286 bits (1071),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 210/503 (42%), Positives = 337/503 (67%), Gaps = 14/503 (2%)

Query  15   RRIAIYARVSTTEQAEEGYSIDEQIRVLKEYCEDNGYFVFEEYIDRGISGKNITGRPAVQ  74
            +R++IY RVST  Q+ EGYSID QI  +KEYC+ + + V + Y DRGISGK +  RP +Q
Sbjct  7    KRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGK-FMNRPELQ  65

Query  75   RMLQDAEQKKLDVVLVWKMNRLARKMVDLMNIVELLNSKNIAFRSHTERYETETPTGKLQ  134
            RML+DA + ++D V++ K NRLAR+  DL++IVE L+ +N+ F S +ER E +T++GKL 
Sbjct  66   RMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLM  125

Query  135  FQMMAAIAEYERNNIAENVKMGMIARAKEGKWNGGQVLGYDIVQIPDANKKRKNTQLVIN  194
            +Q++A+++E+ERNNI ENV MG   RA+EG  +G   LGYD  +IPD++      +L+IN
Sbjct  126  LQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYD--KIPDSKH-----ELMIN  178

Query  195  EKEAEIVQYIFNMYTSGHGYKAIANHINkkgfltkkgktfSLNAIKTIVTNPVYTGYIRY  254
            + EA+IV+YIF+ Y+ GHGY+ IAN +N KG++TKKGK FS+++I  I++NP Y G I++
Sbjct  179  QHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQF  238

Query  255  NVRRDWNEKRRNNINPDPVIQKADHSPIITEEMWSIAKGIFERRSGLPNRVHD-GEFPLT  313
               +DW+EKRR+ +N  PVI  + HSPII +++W+  + I  ++ +   +VH+ G   LT
Sbjct  239  AKYKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQ-IRKKQVSQKPQVHGKGTNLLT  297

Query  314  GIMRCPICDAGMVIGRTTNTLKDGTKKVLEYYVCGAWKNKGTLVCRSNGVRTDKADAYVF  373
            GI++CP C+A M  + TTNTLKDGTKK + YY C+  +NKG+ VC +N+VR+D  + YV 
Sbjct  298  GIIHCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVM  357

Query  374  SKLQTLMQSDKLIQELVNNVNQRNEKLFAPIQKEHAFYQKQMQELEHKRGKTFDAYTEEL  433
             ++  +++SDK+IQ +V  VNQ N+   A+++ + A+ Q+Q +E+  K  + + +  ++ 
Sbjct  358  KQILEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNP  417

Query  434  IPKSLYIEKANALDKQIAELNERMKPLNRQMQGNSGETIAPEAIRKILK-DFSKAFEQAL  492
               S+     +  DKQ+ ++  +++ L++Q Q +   +  +  I KIL+  F +   + +
Sbjct  418  DLTSVIRPSIQKYDKQLNDIMSQINQLKKQ-QNEDKPSYNAKKIGKILRYVFHNI--EKM  474

Query  493  TREQRKRLLHLIINKITINEDRE  515
             + Q K L   +I++I I  D +
Sbjct  475  KKSQLKALYLAVIDRIDIRKDSN  497

33) CLOST_2517 in NC_014614


> BK001539|3|G1|46560519|DAA01833.1|Staphylococcus_epidermidis_ATCC_12228|-|9950..11578|ccrB2|-|cassette 
chromosome recombinase 
B type 2
Length=542

 Score =  284 bits (1062),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 172/388 (45%), Positives = 275/388 (71%), Gaps = 5/388 (1%)

Query  13   LKQYRAGVYIRVSTHEQAEHGFSLEGQDEHTEKYADLFNMEIVEKYIDSGISGKSMEARP  72
            LK  R G+Y+RVST+ Q+ +G+S++GQ ++   Y D+ + E+ + Y D GISGK M+ RP
Sbjct  4    LKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMN-RP  62

Query  73   ALQRMIRDVKDGKLDKIITWKVSRIARNNRDLLNLLKILNDHEVALISISEGIDTSSMMG  132
             LQRM++D K+G++D ++  K +R+ARN  DLL+++  L+ ++V ++S+SE ++ ++  G
Sbjct  63   ELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSG  122

Query  133  KMMLQFLGIMAEFERYTIIENVKMGMERRTKLGLKNGGRMLGYRSVGEGRESKLVIDERE  192
            K+MLQ+L+  +EFER  I+ENV MG  RR++ G  +G   LGY  + ++++  L+I+++E
Sbjct  123  KLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHE-LMINQHE  181

Query  193  AEIVSLIFKLYISGKGYKAIANDLNKKGHKTVKGNNFSITAVKGILENPTYIGKIRYNQY  252
            A+IV  IF  Y  G GY+ IAN LN KG  T KG+ FSI+++  IL NP YIGKI++ +Y
Sbjct  182  ANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAKY  241

Query  253  VDYANKRRKGKNDDVLLVDGVHEAIIDEITWNQARYIQskktknstkntGKYP--LTGIL  310
             D ++KRRKG ND  ++ +G H +II++  WN+ + I+ K+  +  +  GK    LTGI+
Sbjct  242  KDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQ-IRKKQVSQKPQVHGKGTNLLTGII  300

Query  311  RCPECGYGMVAAGTTNKLKDGTSKRIRYYSCGQFHNKGSAVCHANSVRAEYAEAYVFEQV  370
            +CP+CG  M A+ TTN LKDGT KRIRYYSC++F+NKGS VC ANSVRA+  E YV  Q+
Sbjct  301  HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI  360

Query  371  SQFLNNDGLIKKIVKKLNHDRKAGIAPM  398
             +++++D +I+++V ++N++ + + A++
Sbjct  361  LEIVKSDKVIQRVVARVNQENQVDCASL  388