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Homologs of hrcV gene of AY463491

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrcV
( YP_273551.1 )

type III secretion component protein HrcV

NC_005773
(Pseudomonas syringae 1448A)

0.0

2) Psyr_1215
( YP_234307.1 )

Type III secretion protein HrcV

NC_007005
(Pseudomonas syringae B728a)

0.0

3) hrcV
( NP_791229.1 )

type III secretion protein HrcV

NC_004578
(Pseudomonas syringae DC3000)

0.0

4) Pmen_0039
( YP_001185545.1 )

HrcV family type III secretion protein

NC_009439
(Pseudomonas mendocina ymp)

0.0

5) hrpI
( YP_003539962.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

0.0

6) hrcV
( YP_003529892.1 )

type III secretion inner membrane protein HrcV

NC_013961
(Erwinia amylovora CFBP1430)

0.0

7) hrcV
( YP_005804085.1 )

type III secretion inner membrane protein HrcV

NC_017390
(Erwinia pyrifoliae DSM 12163)

0.0

8) hrpI
( YP_002650068.1 )

hrp/hrc type III secretion system-Hrp/hrc secretion/translocation pathway-harpin secretion protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

0.0

9) hrpI
( YP_005818261.1 )

hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-harpin secretion protein

NC_017445
(Erwinia sp. Ejp617)

0.0

10) PCC21_022840
( YP_006646940.1 )

protein HrcV

NC_018525
(Pectobacterium carotovorum PCC21)

0.0

11) hrpI
( YP_001906469.1 )

Harpin secretion protein HrpI (hrp cluster)

NC_010694
(Erwinia tasmaniensis Et1/99)

0.0

12) PC1_2206
( YP_003017781.1 )

HrcV family type III secretion protein

NC_012917
(Pectobacterium carotovorum PC1)

0.0

13) Ser39006_2913
( YP_008523295.1 )

type III secretion protein, HrcV family

NC_022268
(Serratia sp. ATCC 39006)

0.0

14) hrpI
( YP_050180.1 )

type III secretion system protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

0.0

15) Dd586_1888
( YP_003333452.1 )

type III secretion protein, HrcV family

NC_013592
(Dickeya dadantii Ech586)

0.0

16) PSEBR_a5388
( YP_004356898.1 )

type III secretion protein, membrane protein

NC_015379
(Pseudomonas brassicacearum NFM421)

0.0

17) hrcV
( YP_005210975.1 )

protein HrcV

NC_016830
(Pseudomonas fluorescens F113)

0.0

18) Dd1591_1891
( YP_003004220.1 )

HrcV family type III secretion protein

NC_012912
(Dickeya zeae Ech1591)

0.0

19) D781_3944
( YP_007346319.1 )

type III secretion protein, HrcV family

NC_020064
(Serratia marcescens FGI94)

0.0

20) H045_00160
( YP_007395604.1 )

type III secretion protein RscV

NC_020209
(Pseudomonas poae RE*1-1-14)

0.0

21) rscV
( YP_006322225.1 )

type III secretion protein RscV

NC_017911
(Pseudomonas fluorescens A506)

0.0

22) Marme_1079
( YP_004312190.1 )

HrcV family type III secretion protein

NC_015276
(Marinomonas mediterranea MMB-1)

0.0

23) hrcV
( YP_003883240.1 )

type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)

NC_014500
(Dickeya dadantii 3937)

2e-179

24) H650_14870
( YP_008108774.1 )

hypothetical protein

NC_021500
(Enterobacter sp. R4-368)

1e-136

25) HCH_05101
( YP_436207.1 )

type III secretory pathway subunit EscV

NC_007645
(Hahella chejuensis KCTC 2396)

3e-105

26) NH44784_014751
( YP_008028570.1 )

Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

2e-98

27) bcrD
( YP_006899813.1 )

type III secretion pore protein

NC_018829
(Bordetella bronchiseptica MO149)

1e-93

28) bcrD
( YP_006625517.1 )

type III secretion pore protein

NC_018518
(Bordetella pertussis 18323)

2e-93

29) bcrD
( YP_005590294.1 )

putative type III secretion pore protein

NC_017223
(Bordetella pertussis CS)

2e-93

30) bcrD
( NP_880904.1 )

type III secretion pore protein

NC_002929
(Bordetella pertussis Tohama I)

2e-93

31) bcrD
( YP_006967908.1 )

type III secretion pore protein

NC_019382
(Bordetella bronchiseptica 253)

3e-93

32) bcrD
( YP_006895356.1 )

type III secretion pore protein

NC_018828
(Bordetella parapertussis Bpp5)

3e-93

33) YE105_P0016
( YP_004424918.1 )

low calcium response locus membrane protein D,required for Yop secretion

NC_015475
(Yersinia enterocolitica 105.5R(r))

4e-93

34) Y11_p0841
( YP_006007932.1 )

type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)

NC_017565
(Yersinia enterocolitica Y11)

4e-93

35) bcrD
( NP_888157.1 )

type III secretion pore protein

NC_002927
(Bordetella bronchiseptica RB50)

5e-93

36) lcrD
( YP_001004072.1 )

low calcium response locus membrane protein d

NC_008791
(Yersinia enterocolitica 8081)

5e-93

37) yscV
( NP_995377.1 )

putative membrane-bound Yop protein YscV

NC_005813
(Yersinia pestis 91001)

5e-93

38) lcrD
( YP_001604466.1 )

type III secretion protein LcrD

NC_010157
(Yersinia pestis Angola)

5e-93

39) YPA_CD0028
( YP_636820.1 )

membrane-bound Yop protein

NC_008122
(Yersinia pestis Antiqua)

5e-93

40) yscV
( NP_395168.1 )

low calcium response protein D

NC_003131
(Yersinia pestis CO92)

5e-93

41) yscV
( YP_005503168.1 )

low calcium response protein D

NC_017153
(Yersinia pestis D106004)

5e-93

42) yscV
( YP_005506951.1 )

low calcium response protein D

NC_017157
(Yersinia pestis D182038)

5e-93

43) YPDSF_3983
( YP_001154612.1 )

membrane-bound Yop protein

NC_009377
(Yersinia pestis Pestoides F)

5e-93

44) yscV
( YP_003560527.1 )

low calcium response protein D

NC_014017
(Yersinia pestis Z176003)

5e-93

45) pYV0060
( YP_068469.1 )

lcrD, yscV; membrane-bound Yop protein

NC_006153
(Yersinia pseudotuberculosis IP 32953)

5e-93

46) YPTS_4279
( YP_001874679.1 )

HrcV family type III secretion protein

NC_010635
(Yersinia pseudotuberculosis PB1/+)

5e-93

47) hrcV
( YP_003774213.1 )

type III secretion HrcV transmembrane protein

NC_014323
(Herbaspirillum seropedicae SmR1)

1e-92

48) bcrD
( NP_884466.1 )

type III secretion pore protein

NC_002928
(Bordetella parapertussis 12822)

5e-89

49) A1122_03810
( YP_005520457.1 )

secretion system apparatus protein SsaV

NC_017168
(Yersinia pestis A1122)

7e-84

50) YPO0266
( YP_002345347.1 )

secretion system apparatus protein SsaV

NC_003143
(Yersinia pestis CO92)

7e-84

51) YPD4_0230
( YP_005503442.1 )

secretion system apparatus protein

NC_017154
(Yersinia pestis D106004)

7e-84

52) YPD8_0235
( YP_005507318.1 )

secretion system apparatus protein

NC_017160
(Yersinia pestis D182038)

7e-84

53) YPC_0742
( YP_005622728.1 )

secretion system apparatus protein

NC_017265
(Yersinia pestis Harbin 35)

7e-84

54) YPZ3_0228
( YP_003566400.1 )

secretion system apparatus protein

NC_014029
(Yersinia pestis Z176003)

7e-84

55) flhA1
( NP_991814.1 )

secretion system apparatus protein SsaV

NC_005810
(Yersinia pestis 91001)

8e-84

56) YPA_4017
( YP_653923.1 )

secretion system apparatus protein SsaV

NC_008150
(Yersinia pestis Antiqua)

8e-84

57) y0525
( NP_667862.1 )

secretion system apparatus protein SsaV

NC_004088
(Yersinia pestis KIM)

8e-84

58) YPDSF_3705
( YP_001165028.1 )

secretion system apparatus protein SsaV

NC_009381
(Yersinia pestis Pestoides F)

8e-84

59) YPTB0322
( YP_068868.1 )

secretion system apparatus protein SsaV

NC_006155
(Yersinia pseudotuberculosis IP 32953)

4e-81

60) YPTS_0346
( YP_001870792.1 )

secretion system apparatus protein SsaV

NC_010634
(Yersinia pseudotuberculosis PB1/+)

4e-81

61) YpsIP31758_3819
( YP_001402773.1 )

secretion system apparatus protein SsaV

NC_009708
(Yersinia pseudotuberculosis IP 31758)

8e-81

62) YPK_3907
( YP_001722625.1 )

secretion system apparatus protein SsaV

NC_010465
(Yersinia pseudotuberculosis YPIII)

8e-81

• Sequence Alignments

1) hrcV in NC_005773


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  875 bits (3313),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 516/700 (74%), Positives = 627/700 (90%), Gaps = 6/700 (0%)

Query  1    MNQVINFLNMIALSAMRRSELVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60
            MN +I++LN +AL+AMRRSE+VGAF+V+AIVFMMITP+PT LVD+LIAVNICISCLLIML
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120
            AM+LPRPLAFSTFP+VLL+TTMFRLALSI+TTRLILL+QDAGHIVEAFGQFVVGGNLAVG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLITVQEARKRRA  180
            +VIF+ILTVVNF+VITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLI+V+EA++RR+
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVLQHNMSAGDALQLYTVLT  240
            EL KESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGI+IGV+QH M+AGDA+QLY+VLT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  241  IGDGLIAQIPALLISVTCGMIITRVPNTEASAEANIGREIAEQITSQPKAWIIAAVAMLG  300
            IGDGLIAQIPALLISVT GMIITRVPN +A++ ANIGREIAEQITSQPKAWIIA+ AMLG
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLG  300

Query  301  FAALPGMPTGVFITIAIICGAGGMLQLQRARPKPDEQRATAVAPEMNGKEDLRTFSPSRQ  360
            FAA+PGMPT VF+TIAIIC +GG+LQ++RA+PK ++++A++ +PE NG+EDLR F PSRQ
Sbjct  301  FAAMPGMPTMVFVTIAIICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQ  360

Query  361  FVLQFHPGQDSAQIEALISEIRRRRNRLVVQYGLTLPSFIIEHADHLPPDEFRFTVYDVP  420
            FVLQFHP+Q   +IEAL+SEIR+RRNRLVV++GLTLPSFIIE   HL PDEFRFTVY+VP
Sbjct  361  FVLQFHPSQSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVP  420

Query  421  MLKATFTQSHVAVDARQLGGENLPAAIPGNTDRQEDQWVWLPAE----QCGELNPVSAMT  476
            +L+ATF+++ VA+D+   + EN      G+++RQE QW+W+P++    + ++ +P+S+ T
Sbjct  421  VLRATFSETLVAIDGSSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQPISPST  480

Query  477  LIVERMERALQSCAPQFIGLQETKAILSWLESEQPELAQEIQRVLTLTR-FSAVLQRLAS  535
            LI+ERMERALQ C+PQFIGLQETKAIL+WLE+EQPELAQE+QRV+ L+R FS+       
Sbjct  481  LIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGAAAVGFR  540

Query  536  ERVPLRAIRLIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGAEGLQVWLLTPESE  595
             R + R   +IAETLIEH QHERD   LTDYVRIALKS IY+QYC+ EGL VWL+TPESE
Sbjct  541  MRAAAR-YPVIAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWLFTPESE  599

Query  596  GLLRDGLRQTQTETFFALSNEISQMLVQQMNIAFPVRAPEQAVLLVAQDLRSPLRTLLRE  655
            G+LRD+LRQTQTETFFAL++E S MLVQQ+ +AFP R++E+AV+LVAQDLR+PLRTLL++
Sbjct  600  GILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQD  659

Query  656  EFYHVPVLSFAEISNAAKVKVMGRFDLEDDLEPIDNEHAA  695
            EF HVPVLSFAEI+NA+ VKV+GRFDLE+++ P++++ AA
Sbjct  660  EFHHVPVLSFAEITNASEVKVLGRFDLENEFLPLEDDYAA  699

2) Psyr_1215 in NC_007005


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  867 bits (3283),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 515/688 (75%), Positives = 618/688 (90%), Gaps = 12/688 (1%)

Query  1    MNRVINFLNMVALSAMRRSELVGAFFVIAIVFMMITPLPTGLIDVLIAVNICISCLLIML  60
            MN +I++LN +AL+AMRRSE+VGAF+V+AIVFMMITP+PT L+D+LIAVNICISCLLIML
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSVSTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120
            AM+LPRPLAFSTFP+VLL+TTMFRLALS++TTRLILL+QDAGHIVEAFGQFVVGGNLAVG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLITVHEARKRRA  180
            +VIF+ILTVVNF+VITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLI+VHEA++RR+
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVLQHNMAAGDALQLYTVLT  240
            EL KESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGI+IGV+QH M+AGDA+QLY+VLT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  241  IGDGLIAQIPALLISVTSGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIASVAMLG  300
            IGDGLIAQIPALLISVT+GMIITRVPN +A+  ANIGREIAEQITSQPKAWIIAS AMLG
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLG  300

Query  301  FAALPGMPTGVFITIAIICGAGGLLQLQRAKPKADEQRTATVAPEMNGKEDLRTFSPSRQ  360
            FAA+PGMPT VF+TIAIIC +GGLLQ++RAKPK++++++A  +PE NG+EDLR F PSRQ
Sbjct  301  FAAMPGMPTMVFVTIAIICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQ  360

Query  361  FVLQFHPGQDSAQIEALVSEIRKRRNRLVVQYGLTLPSFIIEHVDDIAPDEFRFTVYDVP  420
            FVLQFHP+Q   +IEALVSEIR+RRNRLVV++GLTLPSFIIE   ++ PDEFRFTVY+VP
Sbjct  361  FVLQFHPSQSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVP  420

Query  421  MLKATFTQSHVAVEARQLEGENLPAAIPGNTDRQEDQWVWLPAE----QSGELNPVSSTT  476
            +L+ATF+++ VA+++     EN      G+++RQE QW+W+P++    ++++ +P+S++T
Sbjct  421  VLRATFSETLVAIDGSSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQPISPST  480

Query  477  LIIERMERALQSCAPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTR-FSAVLQRLAS  535
            LIIERMERALQ C+PQFIGLQETKAILGWLE+EQPELAQE+QRV+ L+R FS+     A+
Sbjct  481  LIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGA----AA  536

Query  536  ECVPLRAI---RVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGAEGLQVWLLTP  592
                +RA     VIAETLIEH QHERD   LTDYVRIALKS IY+QYC+ EGL VWL+TP
Sbjct  537  VGFRMRAAARYPVIAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWLFTP  596

Query  593  ESEGLLRDGLRQTQTETFFALSNEISQMLVQQLHIAFPVRAPEQAVLLVAQDLRSPLRTL  652
            ESEG+LRD+LRQTQTETFFAL++E S MLVQQL++AFP R++E+AV+LVAQDLR+PLRTL
Sbjct  597  ESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTL  656

Query  653  LREEFYHVPVLSFAEISNAAKVKVMGRF  680
            L++EF HVPVLSFAEI+NA+ VKV+GRF
Sbjct  657  LQDEFHHVPVLSFAEITNASEVKVLGRF  684

3) hrcV in NC_004578


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  857 bits (3245),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 526/703 (75%), Positives = 624/703 (89%), Gaps = 12/703 (1%)

Query  1    MNQIINFLNMVALSAMRRSEvvgaffviaivfMMITPLPTGLVDVLIAVNICISCLLIML  60
            MN II++LN +AL+AMRRSEVVGAF+V+AIVFMMITP+PT LVD+LIAVNICISCLLIML
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120
            AM+LPRPLAFSTFP+VLL+TTMFRLALSI+TTRLILL+QDAGHIVEAFGQFVVGGNLAVG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180
            +VIF+ILTVVNF+VITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISV EA+ RRS
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240
            EL KESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGI+IGV+QHGMTAGDA+QLY+VLT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300
            IGDGLIAQIPALLISVT GMIITRVPN +A+  ANIGREIAEQITSQPKAWIIA+ AMLG
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLG  300

Query  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQ  360
            FAA+PGMPT VF+TIAIIC +GG+LQ++RAKPK++++ A + +PE NG+EDLR F PSRQ
Sbjct  301  FAAMPGMPTMVFVTIAIICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQ  360

Query  361  FVLQFHPGQNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVP  420
            FVLQFHP+Q+   ++ALVSEIRQRRNRLVV+FGLTLPSFIIEY  HL+PDEFRFTVY+VP
Sbjct  361  FVLQFHPSQSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVP  420

Query  421  MLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLPAE----QGGELATVSSMT  476
            +L+ATF++T VA+D      E+      G+++RQE QW+W+P++    + ++   +S+ T
Sbjct  421  VLRATFSETLVAIDGSSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQPISPST  480

Query  477  LITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTR-FSAVLQRLAS  535
            LI ERMERALQ CGPQFIGLQETKAILGWLE+EQPELAQE+QRV+ L+R FS+     A+
Sbjct  481  LIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGA----AA  536

Query  536  ECVPLRAI---RVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLTP  592
                +RA     VIAETLIEH QHERD   LTDYVRIALKS IY+QYC+ +GL VWL+TP
Sbjct  537  VGFRMRAAARYPVIAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWLFTP  596

Query  593  ESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTL  652
            ESEG+LRD+LRQTQTETFFAL+++ S MLVQQL++AFP R++E+AV+LVAQDLR+PLRTL
Sbjct  597  ESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTL  656

Query  653  LREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEPMDNEHAA  695
            L++EF HVPVLSFAEI+NA+ V+V+GRFDLE+++ P++++ AA
Sbjct  657  LQDEFHHVPVLSFAEITNASEVKVLGRFDLENEFLPLEDDYAA  699

4) Pmen_0039 in NC_009439


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  760 bits (2874),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/704 (71%), Positives = 616/704 (88%), Gaps = 15/704 (2%)

Query  1    MGAVIDFLNGIALAAMRRSEivgafvviaiifMMITPMPTELMDVLIAINICISCLMIML  60
            M  +ID+LN +ALAAMRRSE+VGAF+V+AI+FMMITP+PT L+D+LIA+NICISCL+IML
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLEQDAGHIVEAFGEFVVGGNLAVG  120
            AM+LPRPLAFSTFP+VLL+TTMFRLALSI+TTRLILL+QDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  VVIFLILTIVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVSEARNRRA  180
            +VIF+ILT+VNF+VITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISV EA+ RR+
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  181  ELNKESQLFGAMDGAMKFVNgdaiasliiiainmiggmaigVAQMGMSAGDALQVYTILT  240
            EL KESQLFGAMDGAMKFVNGDAIASLII+AINMIGG++IGV Q GM+AGDA+Q+Y++LT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  241  IGDGLVSQIPALMISVTAGIVITRVPNEQRQ-QTNIGREIAEQLTSQPKAWIIASVAMLG  299
            IGDGL++QIPAL+ISVTAG++ITRVPNE+    +NIGREIAEQ+TSQPKAWIIAS AMLG
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLG  300

Query  300  FAALPGMPTLTFiiiaiicgcggllqlqrarTSSAAEDDPEVIPPEMNGQEDLRTFSPSR  359
            FAA+PGMPT+ F +   I  CGG L       + + +D++    PE NGQEDLR F PSR
Sbjct  301  FAAMPGMPTMVF-VTIAIICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSR  359

Query  360  QFVLQFHPSQDAHQVAALLSEIRQRRNRLVVQYGLTLPSFIIEQSPLLPPDEFRFSVYEV  419
            QFVLQFHPSQ  +++ AL+SEIRQRRNRLVV++GLTLPSFIIE  + L PDEFRF+VYEV
Sbjct  360  QFVLQFHPSQSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEV  419

Query  420  PLFKATLTQSQLAV--PARSLPPGAVC--GSNERQEEDWVWMPADDPMLQNDELEIVSAA  475
            P+++AT++++ +A+  +++++  +     GS+ERQE +W+W+P+D  +L+N + + +S++
Sbjct  420  PVLRATFSETLVAIDGSSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQPISPS  479

Query  476  TLIVERMERAMQACGPQFIGLQETKAILGWLESEQPELAQEMQRVLPLAR-FSAILQRLA  534
            TLI+ERMERA+Q CGPQFIGLQETKAILGWLE+EQPELAQE+QRV+PL+R FS+     A
Sbjct  480  TLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGA----A  535

Query  535  AECVPLRSV---RLIAETLIEHAQHERDVTVLTDYVRIALKSQIYHQYSSAEGLLVWLLT  591
            A    +R+     +IAETLIEH+QHERDV  LTDYVRIALKS IY+QY S EGLLVWL+T
Sbjct  536  AVGFRMRAAARYPVIAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWLFT  595

Query  592  PESEGILRDGLRQTQTETFFALNHETSQLLLQQLHMAFPMRAPEQAVLLVPQDLRSPLRT  651
            PESEGILRD+LRQTQTETFFALN E+S +L+QQL+MAFP R++E+AV+LV+QDLR+PLRT
Sbjct  596  PESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRT  655

Query  652  LLQEEFHHVPVLSFAEISSAARIKVMGRFDLEES-VALDNDYAA  694
            LLQ+EFHHVPVLSFAEI++A+ +KV+GRFDLE+  ++L++DYAA
Sbjct  656  LLQDEFHHVPVLSFAEITNASEVKVLGRFDLENEFLPLEDDYAA  699

5) hrpI in NC_013971


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  713 bits (2695),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 443/705 (63%), Positives = 577/705 (82%), Gaps = 21/705 (2%)

Query  8    LNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVLAMYLPKP  67
            LNRLA++AM+RSEVVGA IV++IVFMMI P+PT L+D+LIA+NICIS LLI+LAM LP+P
Sbjct  8    LNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRP  67

Query  68   LAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVGLVIFLIL  127
            LAFSTFPSVLL+TTMFRLALSI+TTR ILL+QDAGHIVEAFG+FVVGGNLAVG+VIF+IL
Sbjct  68   LAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMIL  127

Query  128  TVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRENLAKESQ  187
            TVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI  H+A++RR +L+KESQ
Sbjct  128  TVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQ  187

Query  188  LFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLTIGDGLIA  247
            LFGAMDGAMKFV+GDAIA+L+IV INMIGG++IGV+Q+GM AG A+++YSVLTIGDGLIA
Sbjct  188  LFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIA  247

Query  248  QIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLGFALLPGM  307
            QIPALLIS+TAGMIITRV+ ++    ANIGREIAEQ+TSQPKAWI+++A+MLGFA +PGM
Sbjct  248  QIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGM  307

Query  308  PTAVFVIISAIALGSGLFQLWRIKQQDSQQQADELHAQQLAPEDNGYQDLRRFNPTRAYL  367
            PT VFV I+ I  G+GL+Q+ R K +++Q+QA        +PE+NG +DLR F P+R ++
Sbjct  308  PTMVFVTIAIICCGGGLLQINRAKPKGNQDQAA-----PTTPENNGQEDLRMFLPSRQFV  362

Query  368  LQFSQEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALAADEFRFCVYEIPL  427
            LQF   + + E  E+L+ +IR+ RNRLV +FG+TLPSF IE+ + L +DEFRF VYE+P+
Sbjct  363  LQFHPSQ-SLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPV  421

Query  428  VTATFAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEHHWCWLPPQHPLLQQEDRRCW  487
            + ATF+   +A+  SS  I     E+D Q   G +ER+E +W W+P +  LL++ + +  
Sbjct  422  LRATFSETLVAIDGSSQAI-----ENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQPI  476

Query  488  NAQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQELQRIMPLSR-FAAV--  544
            ++  LI+ RME+A++  G+QFIGLQE+K+IL WLE+EQPELAQELQR+MPLSR F++   
Sbjct  477  SPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGAAA  536

Query  545  --LQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGLNV  602
              ++  A+ R P+     IAETLIEHGQHERD  ALTD+VRIALK  I +QY   +GL V
Sbjct  537  VGFRMRAAARYPV-----IAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLV  591

Query  603  WLLTPETEELLRDSLRQAQSETFFSLAQEYGINLLNQMRSAFPPYDNHHALILVAQDLRS  662
            WL+TPE+E +LRDSLRQ+Q+ETFF+L  E ++ L++Q+R AFP   +++A++LVAQDLR+
Sbjct  592  WLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRA  651

Query  663  PLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQSPPELQEN  707
            PLR+LL+DEFH VPVLSFAE+T+   ++VLGR+DL++    L+++
Sbjct  652  PLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDLENEFLPLEDD  696

6) hrcV in NC_013961


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  713 bits (2695),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 443/705 (63%), Positives = 577/705 (82%), Gaps = 21/705 (2%)

Query  8    LNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVLAMYLPKP  67
            LNRLA++AM+RSEVVGA IV++IVFMMI P+PT L+D+LIA+NICIS LLI+LAM LP+P
Sbjct  8    LNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRP  67

Query  68   LAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVGLVIFLIL  127
            LAFSTFPSVLL+TTMFRLALSI+TTR ILL+QDAGHIVEAFG+FVVGGNLAVG+VIF+IL
Sbjct  68   LAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMIL  127

Query  128  TVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRENLAKESQ  187
            TVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI  H+A++RR +L+KESQ
Sbjct  128  TVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQ  187

Query  188  LFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLTIGDGLIA  247
            LFGAMDGAMKFV+GDAIA+L+IV INMIGG++IGV+Q+GM AG A+++YSVLTIGDGLIA
Sbjct  188  LFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIA  247

Query  248  QIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLGFALLPGM  307
            QIPALLIS+TAGMIITRV+ ++    ANIGREIAEQ+TSQPKAWI+++A+MLGFA +PGM
Sbjct  248  QIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGM  307

Query  308  PTAVFVIISAIALGSGLFQLWRIKQQDSQQQADELHAQQLAPEDNGYQDLRRFNPTRAYL  367
            PT VFV I+ I  G+GL+Q+ R K +++Q+QA        +PE+NG +DLR F P+R ++
Sbjct  308  PTMVFVTIAIICCGGGLLQINRAKPKGNQDQAA-----PTTPENNGQEDLRMFLPSRQFV  362

Query  368  LQFSQEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALAADEFRFCVYEIPL  427
            LQF   + + E  E+L+ +IR+ RNRLV +FG+TLPSF IE+ + L +DEFRF VYE+P+
Sbjct  363  LQFHPSQ-SLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPV  421

Query  428  VTATFAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEHHWCWLPPQHPLLQQEDRRCW  487
            + ATF+   +A+  SS  I     E+D Q   G +ER+E +W W+P +  LL++ + +  
Sbjct  422  LRATFSETLVAIDGSSQAI-----ENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQPI  476

Query  488  NAQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQELQRIMPLSR-FAAV--  544
            ++  LI+ RME+A++  G+QFIGLQE+K+IL WLE+EQPELAQELQR+MPLSR F++   
Sbjct  477  SPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGAAA  536

Query  545  --LQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGLNV  602
              ++  A+ R P+     IAETLIEHGQHERD  ALTD+VRIALK  I +QY   +GL V
Sbjct  537  VGFRMRAAARYPV-----IAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLV  591

Query  603  WLLTPETEELLRDSLRQAQSETFFSLAQEYGINLLNQMRSAFPPYDNHHALILVAQDLRS  662
            WL+TPE+E +LRDSLRQ+Q+ETFF+L  E ++ L++Q+R AFP   +++A++LVAQDLR+
Sbjct  592  WLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRA  651

Query  663  PLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQSPPELQEN  707
            PLR+LL+DEFH VPVLSFAE+T+   ++VLGR+DL++    L+++
Sbjct  652  PLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDLENEFLPLEDD  696

7) hrpI in NC_017445


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  705 bits (2665),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/705 (63%), Positives = 575/705 (82%), Gaps = 21/705 (2%)

Query  8    LNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVLAMYLPKP  67
            LNRLA++AM+RSEVVGA IV++IVFMMI P+PT L+D+LIA+NICIS LLI+LAM LP+P
Sbjct  8    LNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRP  67

Query  68   LAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVGLVIFLIL  127
            LAFSTFPSVLL+TTMFRLALSI+TTR ILL+QDAGHIVEAFG+FVVGGNLAVG+VIF+IL
Sbjct  68   LAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMIL  127

Query  128  TVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRENLAKESQ  187
            TVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI  H+A++RR +L+KESQ
Sbjct  128  TVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQ  187

Query  188  LFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLTIGDGLIA  247
            LFGAMDGAMKFV+GDAIA+L+IV INMIGG++IGV+Q+GM AG A+++YSVLTIGDGLIA
Sbjct  188  LFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIA  247

Query  248  QIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLGFALLPGM  307
            QIPALLIS+TAGMIITRV+ ++    ANIGREIAEQ+TSQPKAWI+++A+MLGFA +PGM
Sbjct  248  QIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGM  307

Query  308  PTAVFVIISAIALGSGLFQLWRIKqqdnqqqadelqaqqlaPEDNGHQDLRRFNPTRAYL  367
            PT VFV I+ I  G+GL+Q+ R K      ++++ QA   +PE+NG++DLR F P+R ++
Sbjct  308  PTMVFVTIAIICCGGGLLQINRAK-----PKGNQDQAAPTTPENNGQEDLRMFLPSRQFV  362

Query  368  LQFSQAHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPTLAADEFRFCVYEIPL  427
            LQF  ++ + E  E+L+ +IR+ RNRLV +FG+TLPSF IE+ + L +DEFRF VYE+P+
Sbjct  363  LQFHPSQ-SLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPV  421

Query  428  VTATFDVGQLAVRTSSIEMHLADGDSDGQIQPGQAERDEHHWCWLPPQHPLLQQEDRHYW  487
            + ATF    +A+  SS  +     ++D Q   G +ER+E +W W+P +  LL++ + +  
Sbjct  422  LRATFSETLVAIDGSSQAI-----ENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQPI  476

Query  488  NAQQLIMLRMEQAIHQSGSQFIGLQESKSILNWLESEQPELAQELQRIMPLSR-FAAVLQ  546
            ++  LI+ RME+A++  G+QFIGLQE+K+IL WLE+EQPELAQELQR+MPLSR F++   
Sbjct  477  SPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGAAA  536

Query  547  ---RL-ASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGLNV  602
               R+ A+ R P+     IAETLIEHGQHERD  ALTD+VRIALK  I +QY   +GL V
Sbjct  537  VGFRMRAAARYPV-----IAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLV  591

Query  603  WLLTPETEELLRDSLRQAQSETFFSLAQDYGINLLNQMRSAFPPYDNSPALILVAQDLRS  662
            WL+TPE+E +LRDSLRQ+Q+ETFF+L  + ++ L++Q+R AFP   +  A++LVAQDLR+
Sbjct  592  WLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRA  651

Query  663  PLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQSPPDLQEN  707
            PLR+LL+DEFH VPVLSFAE+T+   ++VLGR+DL++    L+++
Sbjct  652  PLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDLENEFLPLEDD  696

8) hrcV in NC_017390


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  705 bits (2667),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/705 (63%), Positives = 575/705 (82%), Gaps = 21/705 (2%)

Query  8    LNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVLAMYLPKP  67
            LNRLA++AM+RSEVVGA IV++IVFMMI P+PT L+D+LIA+NICIS LLI+LAM LP+P
Sbjct  8    LNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRP  67

Query  68   LAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVGLVIFLIL  127
            LAFSTFPSVLL+TTMFRLALSI+TTR ILL+QDAGHIVEAFG+FVVGGNLAVG+VIF+IL
Sbjct  68   LAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMIL  127

Query  128  TVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRENLAKESQ  187
            TVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI  H+A++RR +L+KESQ
Sbjct  128  TVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQ  187

Query  188  LFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLTIGDGLIA  247
            LFGAMDGAMKFV+GDAIA+L+IV INMIGG++IGV+Q+GM AG A+++YSVLTIGDGLIA
Sbjct  188  LFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIA  247

Query  248  QIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLGFALLPGM  307
            QIPALLIS+TAGMIITRV+ ++    ANIGREIAEQ+TSQPKAWI+++A+MLGFA +PGM
Sbjct  248  QIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGM  307

Query  308  PTTVFVIISAIALGSGLFQLWRIKqqdnqqqadelqaqqlaPEDNGHQDLRRFNPTRAYL  367
            PT VFV I+ I  G+GL+Q+ R K      ++++ QA   +PE+NG++DLR F P+R ++
Sbjct  308  PTMVFVTIAIICCGGGLLQINRAK-----PKGNQDQAAPTTPENNGQEDLRMFLPSRQFV  362

Query  368  LQFSQAHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPTLAADEFRFCVYEIPL  427
            LQF  ++ + E  E+L+ +IR+ RNRLV +FG+TLPSF IE+ + L +DEFRF VYE+P+
Sbjct  363  LQFHPSQ-SLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPV  421

Query  428  VTATFDVGQLAVRTSSIEMHLADGDSDGQIQPGQAERDEHHWCWLPPQHPLLQQEDRHYW  487
            + ATF    +A+  SS  +     ++D Q   G +ER+E +W W+P +  LL++ + +  
Sbjct  422  LRATFSETLVAIDGSSQAI-----ENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQPI  476

Query  488  NAQQLIMLRMEQAIHQSGSQFIGLQESKSILNWLESEQPELAQELQRIMPLSR-FAAVLQ  546
            ++  LI+ RME+A++  G+QFIGLQE+K+IL WLE+EQPELAQELQR+MPLSR F++   
Sbjct  477  SPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGAAA  536

Query  547  ---RL-ASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGLNV  602
               R+ A+ R P+     IAETLIEHGQHERD  ALTD+VRIALK  I +QY   +GL V
Sbjct  537  VGFRMRAAARYPV-----IAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLV  591

Query  603  WLLTPETEELLRDSLRQAQSETFFSLAQDYGINLLNQMRSAFPPYDNSPALILVAQDLRS  662
            WL+TPE+E +LRDSLRQ+Q+ETFF+L  + ++ L++Q+R AFP   +  A++LVAQDLR+
Sbjct  592  WLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRA  651

Query  663  PLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQSPPDLQEN  707
            PLR+LL+DEFH VPVLSFAE+T+   ++VLGR+DL++    L+++
Sbjct  652  PLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDLENEFLPLEDD  696

9) hrpI in NC_012214


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  705 bits (2667),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/705 (63%), Positives = 575/705 (82%), Gaps = 21/705 (2%)

Query  8    LNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVLAMYLPKP  67
            LNRLA++AM+RSEVVGA IV++IVFMMI P+PT L+D+LIA+NICIS LLI+LAM LP+P
Sbjct  8    LNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRP  67

Query  68   LAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVGLVIFLIL  127
            LAFSTFPSVLL+TTMFRLALSI+TTR ILL+QDAGHIVEAFG+FVVGGNLAVG+VIF+IL
Sbjct  68   LAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMIL  127

Query  128  TVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRENLAKESQ  187
            TVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI  H+A++RR +L+KESQ
Sbjct  128  TVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQ  187

Query  188  LFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLTIGDGLIA  247
            LFGAMDGAMKFV+GDAIA+L+IV INMIGG++IGV+Q+GM AG A+++YSVLTIGDGLIA
Sbjct  188  LFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIA  247

Query  248  QIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLGFALLPGM  307
            QIPALLIS+TAGMIITRV+ ++    ANIGREIAEQ+TSQPKAWI+++A+MLGFA +PGM
Sbjct  248  QIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGM  307

Query  308  PTTVFVIISAIALGSGLFQLWRIKqqdnqqqadelqaqqlaPEDNGHQDLRRFNPTRAYL  367
            PT VFV I+ I  G+GL+Q+ R K      ++++ QA   +PE+NG++DLR F P+R ++
Sbjct  308  PTMVFVTIAIICCGGGLLQINRAK-----PKGNQDQAAPTTPENNGQEDLRMFLPSRQFV  362

Query  368  LQFSQAHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPTLAADEFRFCVYEIPL  427
            LQF  ++ + E  E+L+ +IR+ RNRLV +FG+TLPSF IE+ + L +DEFRF VYE+P+
Sbjct  363  LQFHPSQ-SLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPV  421

Query  428  VTATFDVGQLAVRTSSIEMHLADGDSDGQIQPGQAERDEHHWCWLPPQHPLLQQEDRHYW  487
            + ATF    +A+  SS  +     ++D Q   G +ER+E +W W+P +  LL++ + +  
Sbjct  422  LRATFSETLVAIDGSSQAI-----ENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQPI  476

Query  488  NAQQLIMLRMEQAIHQSGSQFIGLQESKSILNWLESEQPELAQELQRIMPLSR-FAAVLQ  546
            ++  LI+ RME+A++  G+QFIGLQE+K+IL WLE+EQPELAQELQR+MPLSR F++   
Sbjct  477  SPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGAAA  536

Query  547  ---RL-ASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGLNV  602
               R+ A+ R P+     IAETLIEHGQHERD  ALTD+VRIALK  I +QY   +GL V
Sbjct  537  VGFRMRAAARYPV-----IAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLV  591

Query  603  WLLTPETEELLRDSLRQAQSETFFSLAQDYGINLLNQMRSAFPPYDNSPALILVAQDLRS  662
            WL+TPE+E +LRDSLRQ+Q+ETFF+L  + ++ L++Q+R AFP   +  A++LVAQDLR+
Sbjct  592  WLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRA  651

Query  663  PLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQSPPDLQEN  707
            PLR+LL+DEFH VPVLSFAE+T+   ++VLGR+DL++    L+++
Sbjct  652  PLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDLENEFLPLEDD  696

10) PCC21_022840 in NC_018525


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  695 bits (2628),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/696 (64%), Positives = 568/696 (82%), Gaps = 15/696 (2%)

Query  1    MNLLIIWLNRIALSAMQRSEVVGAvivmsivfmmiiPLPTGLIDVLIALNICVSSLLIVL  60
            MNL+I  LNR+AL+AM+RSEVVGA IV++IVFMMI P+PT L+D+LIA+NIC+S LLI+L
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLAISISTTRQILLQQDGGHIVEAFGNYVVGGNLAVG  120
            AM LP+PLAFSTFP+VLL+TTMFRLA+SI+TTR ILL+QD+GHIVEAFG++VVGGNLAVG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            +VIF+ILTVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI  H+A++RR 
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQHNMAASDAMHVYSVLT  240
            +L+KESQLFGAMDGAMKFV+GDAIASL+IV INMIGG++IGV+QH M+A+DA+++YSVLT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKVDANIGREIAEQLTSQPKAWIISSIGMFG  300
            IGDGLIAQIPALLIS+TAGMIITRV+ ++    ANIGREIAEQ+TSQPKAWII+S +M+G
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLG  300

Query  301  FALLPGMPTLVFVTISLASLGSGLFQLWRIKQQGQLDASQSEADNIPAEQNGYQDLRRFN  360
            FA +PGMPT+VFVTI++   G+GL+Q+ R K +G    +Q +A    +E+NG +DLR F 
Sbjct  301  FAAMPGMPTMVFVTIAIICCGGGLLQINRAKPKG----NQDQAAPTTPENNGQEDLRMFL  356

Query  361  PTRAYLLLFHPVWQEQPTATALVQNIRRLRNKLVYRFGFTLPSFDIEFSDRLAEDEFQFC  420
            P+R ++L FHP  Q      ALV +IR+ RN+LV  FG+TLPSF IE+  +L  DEF+F 
Sbjct  357  PSRQFVLQFHPS-QSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFT  415

Query  421  VYEIPYVKATFVTDRLAIASGAIEPTDANLATPGPTLRDESHWLWLPLAQVAQQPDDVPR  480
            VYE+P ++ATF    +AI +++    + +  + G++ R+ES+W+W+P      +  +   
Sbjct  416  VYEVPVLRATFSETLVAIDGSSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP  475

Query  481  WSADELILARMEQAIHRTGSQFIGLQETKSILAWLESEQPELAQELQRIMPLSR-FASVL  539
             S+  LI+ RME+A++  G+QFIGLQETK+IL+WLE+EQPELAQELQR+MPLSR F++  
Sbjct  476  ISPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGAA  535

Query  540  Q---RL-ASERVPLRSVRPIAEALIEVGQHERDTLALTDYVRLALKSQICHQYSDENNLA  595
                R+ A+ R P+     IAE+LIE GQHERD LALTDYVR+ALKS I +QY  ++ L 
Sbjct  536  AVGFRMRAAARYPV-----IAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLL  590

Query  596  VWLLTPESEELLRDALRQTQNETFFALTQDYASTLLGQLRQAFPPLSSQRSLVLVAQDLR  655
            VWL+TPESE +LRD+LRQTQ ETFFAL  + +  L+ QLR AFP  SS+R+++LVAQDLR
Sbjct  591  VWLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLR  650

Query  656  SPLRTLLQDEFHHVPVLSFTELESTLSINVIGRLDL  691
            +PLRTLLQDEFHHVPVLSF+E+ ++  ++V+GR+DL
Sbjct  651  APLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDL  686

11) hrpI in NC_010694


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  695 bits (2628),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 435/697 (63%), Positives = 572/697 (83%), Gaps = 21/697 (3%)

Query  8    LNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVLAMYLPKP  67
            LNRLA++AM+RSEVVGA IV++IVFMMI P+PT L+D+LIA+NICIS LLI+LAM LP+P
Sbjct  8    LNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRP  67

Query  68   LAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVGLVIFLIL  127
            LAFSTFPSVLL+TTMFRLALSI+TTR ILL+QDAGHIVEAFG+FVVGGNLAVG+VIF+IL
Sbjct  68   LAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMIL  127

Query  128  TVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLLEAHQARQRRENLAKESQ  187
            TVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA L+  H+A++RR +L+KESQ
Sbjct  128  TVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQ  187

Query  188  LFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEPGAAMHIYSVLTIGDGLIA  247
            LFGAMDGAMKFV+GDAIA+L+IV INMIGG++IGV+Q+GM +G A+++YSVLTIGDGLIA
Sbjct  188  LFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIA  247

Query  248  QIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLGFALLPGM  307
            QIPALLIS+TAGMIITRV+ ++    ANIGREIAEQ+TSQPKAWI+++A+MLGFA +PGM
Sbjct  248  QIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGM  307

Query  308  PTAVFIIISAIALGSGLFQLWRTRqqdnqqqadqlqaqqlaPEDNGHQDLRRFNPTRAYL  367
            PT VF+ I+ I  G+GL+Q+ R++      +++Q QA   +PE+NG++DLR F P+R ++
Sbjct  308  PTMVFVTIAIICCGGGLLQINRAK-----PKGNQDQAAPTTPENNGQEDLRMFLPSRQFV  362

Query  368  LQFSPAHSNSAAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALDDGEFRFCVYEIPL  427
            LQF P++S     E+L+ +IR+ RNRLV +FG+TLPSF IE+ + L+ +EFRF VYE+P+
Sbjct  363  LQFHPSQS-LERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPV  421

Query  428  VTATFAVDRLAVRKSSIELHAADGDSDGPIQPGQAERDEHHWCWLPPQHPWLQQEDRRYW  487
            + ATF+   +A+  SS  +     ++D     G +ER+E +W W+P +   L++ + +  
Sbjct  422  LRATFSETLVAIDGSSQAI-----ENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQPI  476

Query  488  NAEQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQELQRIMPLSR-FAAVLQ  546
            ++  LI+ RME+A++  G+QFIGLQE+K+IL WLE+EQPELAQELQR+MPLSR F++   
Sbjct  477  SPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGAAA  536

Query  547  ---RL-ASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGLDA  602
               R+ A+ R P+     IAETLIEHGQHERD  ALTD+VRIALK  I +QY   +GL  
Sbjct  537  VGFRMRAAARYPV-----IAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLV  591

Query  603  WLLTPETEELLRDSLRQAQSETFFSLAQEYGVNLLNQLRSAFPPYDNHQALILVAQDLRS  662
            WL+TPE+E +LRDSLRQ+Q+ETFF+L  E ++ L++QLR AFP   +++A++LVAQDLR+
Sbjct  592  WLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRA  651

Query  663  PLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLHQ  699
            PLR+LL+DEFH VPVLSFAE+T+   ++VLGR+DL++
Sbjct  652  PLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDLEN  688

12) PC1_2206 in NC_012917


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  695 bits (2629),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 438/697 (63%), Positives = 570/697 (82%), Gaps = 17/697 (2%)

Query  1    MNLLITWLNRIALSAMQRSEVVGAvivmsivfmmiiPLPTELIDVLIALNICASSLLIVL  60
            MNL+I  LNR+AL+AM+RSEVVGA IV++IVFMMI P+PT L+D+LIA+NIC S LLI+L
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLAISISTTRQILLQQDGGHIVEAFGNYVVGGNLAVG  120
            AM LP+PLAFSTFP+VLL+TTMFRLA+SI+TTR ILL+QD+GHIVEAFG++VVGGNLAVG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            +VIF+ILTVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI  H+A++RR 
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQHNMAASDAMHVYSVLT  240
            +L+KESQLFGAMDGAMKFV+GDAIASL+IV INMIGG++IGV+QH M+A+DA+++YSVLT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKVDANIGREIAEQLTSQPKAWIISSIGMFG  300
            IGDGLIAQIPALLIS+TAGMIITRV+ ++    ANIGREIAEQ+TSQPKAWII+S +M+G
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLG  300

Query  301  FALLPGMPTLVFVAISLASLGSGLFQLWRIKQQGQLDASQSEADNMPAEQNGYQDLRRFN  360
            FA +PGMPT+VFV+I++   G+GL+Q+ R K +G    +Q +A    +E+NG +DLR F 
Sbjct  301  FAAMPGMPTMVFVTIAIICCGGGLLQINRAKPKG----NQDQAAPTTPENNGQEDLRMFL  356

Query  361  PTRAYLLLFHPIWQGQPTATALVQNIRRLRNKLVYRFGFTLPSFDIEFSDRLAEDEFQFC  420
            P+R ++L FHP  Q+     ALV +IR+ RN+LV  FG+TLPSF IE+  +L  DEF+F 
Sbjct  357  PSRQFVLQFHPS-QSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFT  415

Query  421  VYEIPYVKATFVTDRLAVASAAVEQVDTELA-TPGPTLRDESQWLWLPLAHVSQQPDDVP  479
            VYE+P ++ATF ++ L    ++ + ++ +   + G++ R+ESQW+W+P      +  +  
Sbjct  416  VYEVPVLRATF-SETLVAIDGSSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQ  474

Query  480  RWTADELILARMEQAIHRTGSQFIGLQETKSILAWLESEQPELAQELQRIMPLSR-FASV  538
              ++  LI+ RME+A++  G+QFIGLQETK+IL+WLE+EQPELAQELQR+MPLSR F++ 
Sbjct  475  PISPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGA  534

Query  539  LQ---RL-ASERVPLRSVRPIAEALIEVGQHERDTLALTDYVRLALKSQICHQYSDENSL  594
                 R+ A+ R P+     IAE+LIE GQHERD LALTDYVR+ALKS I +QY  +++L
Sbjct  535  AAVGFRMRAAARYPV-----IAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGL  589

Query  595  AVWLLTPESEELLRDALRQTQNETFFALTQDYASTLLSQLRQAFPPLSSQRSLVLVAQDL  654
             VWL+TPESE +LRD+LRQTQ ETFFAL  + +  L+ QLR AFP  SS+R+++LVAQDL
Sbjct  590  LVWLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDL  649

Query  655  RSPLRTLLQDEFHHVPVLSFTELESTLSINVIGRLDL  691
            R+PLRTLLQDEFHHVPVLSF+E+ ++  ++V+GR+DL
Sbjct  650  RAPLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDL  686

13) Ser39006_2913 in NC_022268


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  694 bits (2624),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 435/699 (63%), Positives = 565/699 (81%), Gaps = 16/699 (2%)

Query  1    MSLLISWLNRIAISAMQRSEIVGAvivmsivfmmiiPLPTGLIDVLIALNICMSSLLIVL  60
            M+L+I  LNR+A++AM+RSE+VGA IV++IVFMMI P+PT L+D+LIA+NIC+S LLI+L
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLTVG  120
            AM LP+PLAFSTFP+VLL+TTMFRLALSI+TTR ILL+QDAGH+VEAFG+FVVGGNL+VG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFMVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIETHQARQRRE  180
            +VIF+ILTVVNFMVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI  H+A++RR 
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMLGGFAIGVLQNGMTAGDAMHIYSVLT  240
            +L+KESQLFGAMDGAMKFV+GDAIASL+IV INM+GG++IGV+Q+GMTAGDA+++YSVLT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKVDNNIGREIAEQLTSQPKAWIISSIGMFG  300
            IGDGLIAQIPALLIS+TAGMIITRV+ ++     NIGREIAEQ+TSQPKAWII+S +M+G
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLG  300

Query  301  FALLPGMPTIVFAVISLISLGSGLFQLWRIKQSGLQADSLLAADNLPAEQNGYQDLRRFN  360
            FA +PGMPT+VF  I++I  G+GL+Q+ R K  G Q +    A    +E+NG +DLR F 
Sbjct  301  FAAMPGMPTMVFVTIAIICCGGGLLQINRAKPKGNQDQ----AAPTTPENNGQEDLRMFL  356

Query  361  PTRAYLLQFNPVFQHAQAAALLVQEIRRLRNRLVYHFGFTLPSFDIEFNPTVPEDEFQFC  420
            P+R ++LQF+P  Q  +    LV EIR+ RNRLV +FG+TLPSF IE+++ +  DEF+F 
Sbjct  357  PSRQFVLQFHPS-QSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFT  415

Query  421  VYEIPLLRATFGSRHVAVEKRLIPEEQQDDTMHPGINARDEHHWLWLAPEHDLLRQDPLP  480
            VYE+P+LRATF+   VA++       ++D+    G + R+E +W+W++ + +LL +    
Sbjct  416  VYEVPVLRATFSETLVAIDGS-SQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQ  474

Query  481  HWDTESLILKRMENAIHRSGSQFIGLQETKSILAWLEGEQPELAQELQRIMPLSR-FASV  539
                 +LI+ RME A++  G+QFIGLQETK+IL+WLE EQPELAQELQR+MPLSR F++ 
Sbjct  475  PISPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGA  534

Query  540  LQ---RL-ASERVPLRSVRPIAEALIEIGQHERDTNALADYVRLELKSQICHQYSQDDNL  595
                 R+ A+ R P+     IAE+LIE GQHERD  AL+DYVR+ LKS I +QY  ++ L
Sbjct  535  AAVGFRMRAAARYPV-----IAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGL  589

Query  596  FVWLLTPETEELLRDALRQTQNETFFALAQEYAATLLMQLRQAFPPMAPLSAVILVAQDL  655
            +VWL+TPE+E +LRD+LRQTQ ETFFAL  E +  L+ QLR AFP  ++  AV+LVAQDL
Sbjct  590  LVWLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDL  649

Query  656  RSPLRALLQDEFHHVPVLSFTELESHLSINVIGRIDLQE  694
            R+PLR+LLQDEFHHVPVLSF+E+ +   ++V+GR+DL++
Sbjct  650  RAPLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDLEN  688

14) hrpI in NC_004547


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  681 bits (2575),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 439/697 (63%), Positives = 566/697 (82%), Gaps = 17/697 (2%)

Query  1    MNLLIIWLNRIALSAMQRSEVVGAvivmsivfmmiiPLPTGLIDVLIALNICASSLLIVL  60
            MNL+I  LNR+AL+AM+RSEVVGA IV++IVFMMI P+PT L+D+LIA+NIC S LLI+L
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLAISISTTRQILLQQDGGHIVEAFGNYVVGGNLAVG  120
            AM LP+PLAFSTFP+VLL+TTMFRLA+SI+TTR ILL+QD+GHIVEAFG++VVGGNLAVG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFMVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            +VIF+ILTVVNFMVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI  H+A++RR 
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQHNMAASDAMHVYSVLT  240
            +L+KESQLFGAMDGAMKFV+GDAIASL+IV INMIGG++IGV+QH M+A+DA+++YSVLT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKVDANIGREIAEQLTSQPKAWIISSIGMFG  300
            IGDGLIAQIPALLIS+TAGMIITRV+ ++    ANIGREIAEQ+TSQPKAWII+S +M+G
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLG  300

Query  301  FALLPGMPTLVFVAIslsslgsglFQLWRIKQQGQLDANQLEADNMPAEQNGYQDLRRFN  360
            FA +PGMPT+VFV+I++   G+GL+Q+ R K +G+ D    +A    +E+NG +DLR F 
Sbjct  301  FAAMPGMPTMVFVTIAIICCGGGLLQINRAKPKGNQD----QAAPTTPENNGQEDLRMFL  356

Query  361  PTRAYLLLFHPVWQGQPTATVLVQNIRRLRNRLVYRFGFTLPSFDIEFSDRLAEDEFQFC  420
            P+R ++L FHP  Q+      LV +IR+ RNRLV  FG+TLPSF IE+  +L  DEF+F 
Sbjct  357  PSRQFVLQFHPS-QSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFT  415

Query  421  VYEIPYVKATFVTDQLAVANGAIEQVDATIA-TPGHTLRDESQWLWLPLAHVAQQPDDIP  479
            VYE+P ++ATF ++ L   +G+ + ++     + G + R+ESQW+W+P      +  +  
Sbjct  416  VYEVPVLRATF-SETLVAIDGSSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQ  474

Query  480  RWTSDELILARMEQAIHRTGSQFIGLQETKSILAWLESEQPELAQELQRIMPLSR-FASV  538
              ++  LI+ RME+A++  G+QFIGLQETK+IL+WLE+EQPELAQELQR+MPLSR F++ 
Sbjct  475  PISPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGA  534

Query  539  LQ---RL-ASERVPLRSVRPIAEALIEVGQHERDTLALTDYVRLALKSQICHQYSDENNL  594
                 R+ A+ R P+     IAE+LIE GQHERD LALTDYVR+ALKS I +QY  ++ L
Sbjct  535  AAVGFRMRAAARYPV-----IAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGL  589

Query  595  AVWLLTPESEELLRDALRQTQNETFFALTQDYASTLLSQLRQAFPPFSSQSSLVLVAQDL  654
             VWL+TPESE +LRD+LRQTQ ETFFAL  + +  L+ QLR AFP  SS+ +++LVAQDL
Sbjct  590  LVWLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDL  649

Query  655  RSPLRTLLQDEFHHVPVLSFTELESTLSINVIGRLDL  691
            R+PLRTLLQDEFHHVPVLSF+E+ ++  ++V+GR+DL
Sbjct  650  RAPLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDL  686

15) Dd586_1888 in NC_013592


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  676 bits (2555),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/698 (62%), Positives = 568/698 (82%), Gaps = 15/698 (2%)

Query  1    MAVLIAWLNRFAMSAMQRSEvvgavivmaivfmmiiPLPTDLIDVLIALNICISSLLIVL  60
            M ++I  LNR+A++AM+RSEVVGA IV+AIVFMMI P+PT L+D+LIA+NICIS LLI+L
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLAVG  120
            AM LP+PLAFSTFP+VLL+TTMFRLALSI+TTR ILL+QDAGH+VEAFG+FVVGGNLAVG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIDSQQARQRRE  180
            +VIF+ILTVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI  ++A++RR 
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMAAGDAMHIYSVLT  240
            +L+KESQLFGAMDGAMKFV+GDAIA+L+IV INMIGG++IGV+Q+GM+AGDA+++YSVLT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQTDNNIGREIAEQLTSQPKAWIISSVGMLG  300
            IGDGLIAQIPALLIS+TAGMIITRV+ ++     NIGREIAEQ+TSQPKAWII+S +MLG
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLG  300

Query  301  FALLPGMPTLVFLMISLVSLGSGLFQLWRAKQNGLQDALLANDNLPADQNGYQDLRRFNP  360
            FA +PGMPT+VF+ I+++  G+GL+Q+ RAK +G QD         +++NG +DLR F P
Sbjct  301  FAAMPGMPTMVFVTIAIICCGGGLLQINRAKPKGNQD---QAAPTTPENNGQEDLRMFLP  357

Query  361  TRAYLLQFHTVWQGTAAAAVLVQNIRRLRNRLVYHFGFTLPSFDIEFTPTVPEDEFRFCV  420
            +R ++LQFH   Q+      LV +IR+ RNRLV +FG+TLPSF IE+ + +  DEFRF V
Sbjct  358  SRQFVLQFHPS-QSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTV  416

Query  421  YEIPQLRASFGVPLLAVSREQLPQDGQDDGMIPGLAARDEHHLLWMTPEHPMLQQPQLCP  480
            YE+P LRA+F+  L+A+     + + +++    G + R+E + +W+  +  +L++++  P
Sbjct  417  YEVPVLRATFSETLVAIDGSSQAIENDQQ-YSKGSSERQESQWIWVPTDAELLNNSNTQP  475

Query  481  WNAEALILMRMENAMHRSGAQFIGLQETKSILAWLESEQPELAQELQRIMPLSR-FASVL  539
             ++ +LI+ RME A++  G+QFIGLQETK+IL+WLE+EQPELAQELQR+MPLSR F++  
Sbjct  476  ISPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGAA  535

Query  540  Q---RL-ASERVPLRSVRPIAEALIDIGQHERDINALTDYVRLELKAQICHQYSQEDSLT  595
                R+ A+ R P+     IAE+LI+ GQHERD+ ALTDYVR+ LK+ I +QY  +++L 
Sbjct  536  AVGFRMRAAARYPV-----IAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLL  590

Query  596  VWLLTPETEELLRDALRQTQSDTFFALNQEYAATLLGQLRRAFPPMLPSSALILVAQDLR  655
            VWL+TPE+E +LRD+LRQTQ++TFFALN E +  L+ QLR AFP   +  A++LVAQDLR
Sbjct  591  VWLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLR  650

Query  656  SPLRILLQDEFHHVPVLSFTELESHLSINVAGRIDLQD  693
            +PLR LLQDEFHHVPVLSF+E+ +   ++V GR+DL++
Sbjct  651  APLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDLEN  688

16) PSEBR_a5388 in NC_015379


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  671 bits (2536),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 436/700 (63%), Positives = 576/700 (83%), Gaps = 13/700 (1%)

Query  1    MIALLNKVANEAVRRIEVVGAFVVLGIVFMLILPLPTPVVDALIAINiciscllivisly  60
            +I LLN++A  A+RR EVVGAF+VL+IVFM+I P+PT +VD LIA+NICISCLLI++++ 
Sbjct  4    IIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQ  63

Query  61   lPRPLAFSSFPAVlllttlfrlalSVATTRLILLQGDAGHIVQAFGNFVVGGNLAVGLVI  120
            LPRPLAFS+FP+VLL+TT+FRLALS+ATTRLILL+ DAGHIV+AFG+FVVGGNLAVG+VI
Sbjct  64   LPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVI  123

Query  121  FLILTVVNFLVITKGSERVAEVAARFTLDALPGKQMSIDSDLRANLIDVTEARRRREELN  180
            F+ILTVVNF+VITKGSERVAEV+ARFTLDA+PGKQMSIDSDLRANLI V EA+RRR EL 
Sbjct  124  FMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELG  183

Query  181  KESQLFGAMDGAMKFVKGDAIAGLVIVVINLIGGFTVGMMQHDMGASESMHLYAVLTIGD  240
            KESQLFGAMDGAMKFV+GDAIA+L+IV IN+IGG+T+G++QH+M A+++++LY+VLTIGD
Sbjct  184  KESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGD  243

Query  241  GLIAQIPALLISLTAGMIITRVSPEGQPAGSSVGKEIAQQLTAEPKAWVIASVGMLGFAA  300
            GLIAQIPALLIS+TAGMIITRV+ E+ ++ +++G+EIA+Q+T++PKAW+IAS +MLGFAA
Sbjct  244  GLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLGFAA  303

Query  301  LPGMPTLVFIVIALITGTAGIVQLYSRARQVRQGKQPAEVVAPAHNGAEDLRSFDPTRAF  360
            +PGMPT+VF+ IA+I   +G++Q+ +RA+  +  ++ A   +P +NG EDLR F P+R F
Sbjct  304  MPGMPTMVFVTIAIICCGGGLLQI-NRAKP-KGNQDQAAPTTPENNGQEDLRMFLPSRQF  361

Query  361  LLQFSKAMEGNAAAEEVIQAIRKKRNALVAGFGLTLPPFEIEYSVLLEDDEFRFCVHEVP  420
            +LQF  + ++    E ++  IR++RN LV  FGLTLP+F IEY   LE DEFRF V EVP
Sbjct  362  VLQFHPS-QSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVP  420

Query  421  MLRATFGER-IAVARGPLPFEPRDGLV-GNEVRDEQQWLWLTPDDPLLADERVEAVPAAE  478
            +LRATF+E  +A+  ++ ++E  +    G+  R+E QW+W+  D  LL +   ++++++ 
Sbjct  421  VLRATFSETLVAIDGSSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQPISPST  480

Query  479  LLVERMSRAMFATGPQFLGLQESKSILSWLEAGQPELVQELQRTMPLAR-FAAVLQRLAG  537
            L++ERM RA+   GPQF+GLQE+K+IL+WLE+ QPEL QELQR MPL+R F++     A+
Sbjct  481  LIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGA----AA  536

Query  538  EGVPLRAV---RLIAESLIEHGQHERDVGALTDYARIALKSQIYHQYRDENGLHVWLLTP  594
             G  +RA     +IAE+LIEHGQHERDV ALTDY RIALKS IY+QY  ++GL VWL+TP
Sbjct  537  VGFRMRAAARYPVIAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWLFTP  596

Query  595  ETEGLLRDALRQTQTETFFALESLHTRALVMQLREGFPLRAKRVAVLLVAQdlraplrdl  654
            E+EG+LRD+LRQTQTETFFAL+S  +  LV QLR +FP R+   AV+LVAQDLRAPLR L
Sbjct  597  ESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTL  656

Query  655  lrdEFNHVPVLAFSELHSNAQVTVLGRFDLEQEKLRMEDA  694
            L+DEF+HVPVL+F+E+ + ++V VLGRFDLE+E L +ED 
Sbjct  657  LQDEFHHVPVLSFAEITNASEVKVLGRFDLENEFLPLEDD  696

17) hrcV in NC_016830


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  671 bits (2538),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 439/700 (63%), Positives = 573/700 (82%), Gaps = 13/700 (1%)

Query  1    MIALLNKVANEAVRRIEVVGAFVVLGIVFMLILPLPTSVVDALIAiniciscllivlslY  60
            +I LLN++A  A+RR EVVGAF+VL+IVFM+I P+PT +VD LIA+NICISCLLI+L++ 
Sbjct  4    IIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQ  63

Query  61   LPRPLAFSSFPAVlllttlfrlalSVATTRLILLQGDAGHIVQAFGNFVVGGNLAVGLVI  120
            LPRPLAFS+FP+VLL+TT+FRLALS+ATTRLILL+ DAGHIV+AFG+FVVGGNLAVG+VI
Sbjct  64   LPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVI  123

Query  121  FLILTVVNFLVITKGSERVAEVAARFTLDALPGKQMSIDSDLRANLIDVSEARRRREELN  180
            F+ILTVVNF+VITKGSERVAEV+ARFTLDA+PGKQMSIDSDLRANLI V EA+RRR EL 
Sbjct  124  FMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELG  183

Query  181  KESQLFGAMDGAMKFVKGDAIAGLVIVVINLIGGFSVGMMQHDMGASESMHLYAVLTIGD  240
            KESQLFGAMDGAMKFV+GDAIA+L+IV IN+IGG+++G++QH+M A+++++LY+VLTIGD
Sbjct  184  KESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGD  243

Query  241  GLIAQIPALLISLTAGMIITRVSPEGQPAGSSVGKEIAQQLTAEPKAWVIASVGMLGFAA  300
            GLIAQIPALLIS+TAGMIITRV+ E+ ++ +++G+EIA+Q+T++PKAW+IAS +MLGFAA
Sbjct  244  GLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLGFAA  303

Query  301  LPGMPTLVFIVIALITGTAGIVQLYSRARQARQGDQPAEVVAPAQNGAEDLRSFDPTRAY  360
            +PGMPT+VF+ IA+I   +G++Q+ +RA+ ++  ++ A   +P +NG EDLR F P+R +
Sbjct  304  MPGMPTMVFVTIAIICCGGGLLQI-NRAK-PKGNQDQAAPTTPENNGQEDLRMFLPSRQF  361

Query  361  LLQFSKAMEGNAAAEEAIQAIRKKRNALVAGFGLTLPPFEIEYSALLEDDEFRFCVHEVP  420
            +LQF  + ++    E  +  IR++RN LV  FGLTLP+F IEY A LE DEFRF V EVP
Sbjct  362  VLQFHPS-QSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVP  420

Query  421  MLRATFGERVAVARGPLPLEPRDGQ--VGSEVRDEQQWLWLTPDDPLLADERVEAVSAAE  478
            +LRATF+E +    G+      D Q   GS  R+E QW+W+  D  LL +   +++S++ 
Sbjct  421  VLRATFSETLVAIDGSSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQPISPST  480

Query  479  LLVERMSRAMFATGPQFLGLQESKSILSWLEAGQPELVQELQRTMPLAR-FAAVLQRLAG  537
            L++ERM RA+   GPQF+GLQE+K+IL+WLE+ QPEL QELQR MPL+R F++     A+
Sbjct  481  LIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGA----AA  536

Query  538  EGVPLRAV---RLIAESLIEHGQHERDVGALTDYARIALKSQIYHQYRDEDGLHVWLLTP  594
             G  +RA     +IAE+LIEHGQHERDV ALTDY RIALKS IY+QY  ++GL VWL+TP
Sbjct  537  VGFRMRAAARYPVIAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWLFTP  596

Query  595  ETEGLLRDALRQTQTETFFALESLHTRALVMQLREGFPLRAKRVAVLLVAQdlraplrdl  654
            E+EG+LRD+LRQTQTETFFAL+S  +  LV QLR +FP R+   AV+LVAQDLRAPLR L
Sbjct  597  ESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTL  656

Query  655  lrdEFNHVPVLAFSELHSNAQVTVLGRFDLEQEKLRMEDA  694
            L+DEF+HVPVL+F+E+ + ++V VLGRFDLE+E L +ED 
Sbjct  657  LQDEFHHVPVLSFAEITNASEVKVLGRFDLENEFLPLEDD  696

18) Dd1591_1891 in NC_012912


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  653 bits (2469),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 432/696 (63%), Positives = 560/696 (81%), Gaps = 15/696 (2%)

Query  1    MAILIVWLNRFAISAMQRSEvvgavivmaivfmmiiPLPTGLIDVLIAFNICISSLLIVL  60
            M ++I  LNR+A++AM+RSEVVGA IV+AIVFMMI P+PT L+D+LIA NICIS LLI+L
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLAVG  120
            AM LP+PLAFSTFP+VLL+TTMFRLALSI+TTR ILL+QDAGH+VEAFG+FVVGGNLAVG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFMILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIDSQQARQRRE  180
            +VIFMILTVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI  ++A++RR 
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQNGMAAGDAMHIYSVLT  240
            +L+KESQLFGAMDGAMKFV+GDAIASL+IV INMIGG++IGV+Q+GM+AGDA+++YSVLT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKTDNNIGREIAEQLTSQPKAWIISSVGMLG  300
            IGDGLIAQIPALLIS+TAGMIITRV+ ++     NIGREIAEQ+TSQPKAWII+S +MLG
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLG  300

Query  301  FALLPGMPTLVFllislaslgsglFQLWRAKQSglqdalladdglpadqNGYQDLRRFNP  360
            FA +PGMPT+VF+ I++   G+GL+Q+ RAK     +         +++NG +DLR F P
Sbjct  301  FAAMPGMPTMVFVTIAIICCGGGLLQINRAKPK---GNQDQAAPTTPENNGQEDLRMFLP  357

Query  361  TRAYLLQFHTVWQGAAAAALLVQEIRRLRNRLVYHFGFTLPSFDIEFTPNVPEDEFRFCV  420
            +R ++LQFH   Q+      LV EIR+ RNRLV +FG+TLPSF IE+ +++  DEFRF V
Sbjct  358  SRQFVLQFHPS-QSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTV  416

Query  421  YEIPQLRASFGVPLLAVPRGQMPEDALDDGMMLGLATRDEHHLLWLTPEHPMLQQPELSP  480
            YE+P LRA+F+  L+A+  +  + +  D+    G + R+E + +W+  +  +L++++  P
Sbjct  417  YEVPVLRATFSETLVAIDGSSQAIEN-DQQYSKGSSERQESQWIWVPTDAELLNNSNTQP  475

Query  481  WSPDALILSRMENAIHRSGAQFIGLQETKSILAWLESEQPELAQELQRIMPLSR-FASVL  539
             SP +LI+ RME A++  G+QFIGLQETK+IL+WLE+EQPELAQELQR+MPLSR F++  
Sbjct  476  ISPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGAA  535

Query  540  Q---RL-ASERVPLRSVRPIAEALIDIGQHERDINALTDYVRLELKAQICHQYSQDDSLT  595
                R+ A+ R P+     IAE+LI+ GQHERD+ ALTDYVR+ LK+ I +QY  +++L 
Sbjct  536  AVGFRMRAAARYPV-----IAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLL  590

Query  596  VWLLTPETEELLRDALRQTQNETFFALTQEYAATLLGQLRRAFPPMMAPSSLILVAQDLR  655
            VWL+TPE+E +LRD+LRQTQ ETFFAL  E +  L+ QLR AFP   +  +++LVAQDLR
Sbjct  591  VWLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLR  650

Query  656  SPLRILLQDEFHHVPVLSFTELESHLSINVAGRIDL  691
            +PLR LLQDEFHHVPVLSF+E+ +   ++V GR+DL
Sbjct  651  APLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDL  686

19) D781_3944 in NC_020064


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  653 bits (2470),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 408/708 (58%), Positives = 557/708 (79%), Gaps = 21/708 (2%)

Query  1    MNSLFAILNKIAISAMQRSEIVGAAFALALVFMLIVPLPLGLIDMLIAVNICLSSLLIVL  60
            MN ++ +LN++A++AM+RSE+VGA + LA+VFM+I P+P  L+D+LIAVNIC+S LLI+L
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISVTRQILIQQDAGHIVEAFGNFVVGGNLAVG  120
            AM LP+PLAFSTFP+VLL+TTMFRLALSI+ TR IL++QDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  MVMFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIDVHQARNRRN  180
            MV+F+ILTVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI VH+A+ RR+
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  181  ELAKESQLFGAMDGAMKFVKGDAIAGLVILCINLIGGFSIGVLQLDMAPGDAMHTYSILT  240
            EL+KESQLFGAMDGAMKFV+GDAIA+L+I+ IN+IGG++IGV+Q +M++GDA++ YS+LT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSSESDSTETPNVGREIAEQLTSQPKAWILASMGMI  300
            IGDGLIAQIPALLIS+TAGMIITRV++E D++  +N+GREIAEQ+TSQPKAWI+AS +M+
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNE-DAAGPANIGREIAEQITSQPKAWIIASAAML  299

Query  301  GFALVPGMPGVVFSLLALITLGGGGFQVWRARQEMLLAKPQIENEVIPPELNGREDLRQF  360
            GFA +PGMP +VF  +A+I  GGG +Q+ RA+        Q +     PE NG+EDLR F
Sbjct  300  GFAAMPGMPTMVFVTIAIICCGGGLLQINRAKPK----GNQDQAAPTTPENNGQEDLRMF  355

Query  361  NPTRPWLIQFHTSRRGAAETLD-LVQEIRRLRNRIVYHFGFTLPAFDIEFTDKQPVDEFR  419
             P+R  ++QFH S+  + E ++ LV EIR+ RNR+V +FG+TLP+F IE+      DEFR
Sbjct  356  LPSRQFVLQFHPSQ--SLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFR  413

Query  420  FSVYEIPKVVGTFDSALTALDVRQLESLSEAEREGAVPGDEARGEEDYLWLAAGHPLLAR  479
            F+VYE+P + +TF  +L A+D    +++ + ++ +   G   R E + +W++++  LL  
Sbjct  414  FTVYEVPVLRATFSETLVAIDGSS-QAIENDQQYSK--GSSERQESQWIWVPTDAELLNN  470

Query  480  EDLTRHSAGELLLTRMEDAIHASSPHFIGLQETRALMSWLDAEQPELAQELQRVMPLTR-  538
             +    S++ L++ RME A++  +P+FIGLQET+A+++WL++EQPELAQELQRVMPL+R 
Sbjct  471  SNTQPISPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV  530

Query  539  FSGV----LQKLVAERIPLRSVRAIGEALIEHGQHERDVNLLTEQVRITLKTHLCHQYGQ  594
            FSG     ++   A R P+     I+E+LIEHGQHERDV  LT+ VRI+LK+ + +QY  
Sbjct  531  FSGAAAVGFRMRAAARYPV-----IAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCS  585

Query  595  PDGIHAWLLTPELEEALRDSLRQTQNDIFFALSQQQIQLIHQEVKQAYAPGQDKQAVLLA  654
             +G+  WL+TPE E  LRDSLRQTQ + FFAL+ +   ++ Q+++ A++     +AV+L 
Sbjct  586  QEGLLVWLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLV  645

Query  655  AQDLRGPLRALIQERFHAVPVLSFAELEPALAVQVLGRLDVDPAFYSL  702
            AQDLR+PLR+L+Q+ FH VPVLSFAE+  A  V+VLGR+D++  F +L
Sbjct  646  AQDLRAPLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDLENEFLPL  693

20) H045_00160 in NC_020209


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  647 bits (2447),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 400/663 (61%), Positives = 538/663 (82%), Gaps = 19/663 (2%)

Query  36   PLPTWLVDILIAINICISCLLIVLALYLPGPLAFSSFPSILLLTTMFRLALSIATTRLIL  95
            P+PTWLVDILIA+NICISCLLI+LA+ LP PLAFS+FPS+LL+TTMFRLALSIATTRLIL
Sbjct  37   PIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLIL  96

Query  96   LEQDAGDIVEAFGNFVVGGNLAVGMVIFLILTLVNFLVITKGSERVAEVAARFSLDAMPG  155
            L+QDAG+IVEAFG+FVVGGNLAVGMVIF+ILT+VNF+VITKGSERVAEV+ARF+LDAMPG
Sbjct  97   LDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPG  156

Query  156  KQMSIDSDLRAGLIDGLQAREKREQLSRESQLFGAMDGAMKFVKGDAIAGLIIVVVNLLG  215
            KQMSIDSDLRA LI   +A+ +R +L++ESQLFGAMDGAMKFV+GDAIA+LIIV +N++G
Sbjct  157  KQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIG  216

Query  216  GFTTGMFQHGLSAAESIQLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDGRKGVSNM  275
            G+T G++QHG++A++++QLYSVLTIGDGLIAQIPALLIS+TAGMIITRV+ ++  G +N+
Sbjct  217  GITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANI  276

Query  276  GAEIARQMTSEPKSWMIASVGMLAFAVVPGMPTLVFI---LISAATGFLGYYLMrqrqre  332
            G EIA Q+TS+PK+W+IAS +ML+FA +PGMPT+VF+   +I  + G     L++  +  
Sbjct  277  GREIAEQITSQPKAWIIASAAMLGFAAMPGMPTMVFVTIAIICCGGG-----LLQINRAK  331

Query  333  ekpkeeAANVVRPEENGNEDLRGFDPSRPYLLQFPPSLRGTPEVTDLIHGIRQARNSLVA  392
             K +++ A    PE+NG+EDLR F PSR ++LQF PS ++   +  L+  IRQ RN LV 
Sbjct  332  PKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPS-QSLERIEALVSEIRQRRNRLVV  390

Query  393  NIGLTLPPFEVELDDALAADEMRFCVHEVPMVKAS-VVTLVAVDRKALAVEPEHAVP-GL  450
            N+GLTLP+F +E +  L +DE RF V EVP+++A+   TLVA+D  + A+E ++  + G 
Sbjct  391  NFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQAIENDQQYSKGS  450

Query  451  AERDEQdwlwlppddplladpalERFTATSLIIERMRQAMMLSGPQFLGIQESKAILSWL  510
            +ER+E +W+W+P D  LL ++  + +++++LIIERM +A+ + GPQF+G+QE+KAIL+WL
Sbjct  451  SERQESQWIWVPTDAELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAILGWL  510

Query  511  EHNQSELVQELQRIMPLSR-FSAVLQRLASEGVPLRAV---RLIVESLIEHGQHEREPDA  566
            E +Q+EL QELQR+MPLSR FS+     A+ G  +RA     +I E+LIEHGQHER+  A
Sbjct  511  ETEQPELAQELQRVMPLSRVFSGA----AAVGFRMRAAARYPVIAETLIEHGQHERDVLA  566

Query  567  LADYARIALKAQIFQQYSEDDGLHAWLLSPHTENILREALRQTQTGVFFALDNESSAALV  626
            L+DY RIALK+ I++QY  ++GL  WL++P++E ILR++LRQTQT  FFAL++ESS  LV
Sbjct  567  LTDYVRIALKSLIYNQYCSQEGLLVWLFTPESEGILRDSLRQTQTETFFALNSESSLMLV  626

Query  627  NLLNQAFTLRARSKSVMLVAQDLRSPLRALLLEEFNHVPVLSFAELASTSKVKVLGRFDL  686
            + L  AF  R+  ++VMLVAQDLR+PLR+LL +EF+HVPVLSFAE++++S VKVLGRFDL
Sbjct  627  QQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDL  686

Query  687  GQD  689
             ++
Sbjct  687  ENE  689

21) rscV in NC_017911


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  641 bits (2424),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 407/689 (60%), Positives = 553/689 (81%), Gaps = 13/689 (1%)

Query  7    INGLLLKVAQRAEVLGavvvmaiififivPLPTWLVDILIALNICISCLLIVLALYLPGP  66
            +N L L   +R+EV+GA +V+AI+F+ I P+PTWLVDILIA+NICISCLLI+LA+ LP P
Sbjct  8    LNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRP  67

Query  67   LAFSSFPSILLLTTMFRLALSIATTRLILLEQDAGDIVEAFGNFVVGGNLAVGMVIFLIL  126
            LAFS+FPS+LL+TTMFRLALSIATTRLILL+QDAG+IVEAFG+FVVGGNLAVGMVIF+IL
Sbjct  68   LAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMIL  127

Query  127  TLVNFLVITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGVQARDKRDQLSRESQ  186
            T+VNF+VITKGSERVAEV+ARF+LDAMPGKQMSIDSDLRA LI   +A+ +R +L++ESQ
Sbjct  128  TVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQ  187

Query  187  LFGAMDGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSAADSISLYSVLTIGDGLIA  246
            LFGAMDGAMKFV+GDAIA+LIIV +N++GG++ G++QHG++A+D++ LYSVLTIGDGLIA
Sbjct  188  LFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIA  247

Query  247  QIPALLISLTAGMIITRVAPDGRKGVSNMGVEIARQMTSEPKSWVIASVGMLAFALVPGM  306
            QIPALLIS+TAGMIITRV+ ++  G +N+G EIA Q+TS+PK+W+IAS +ML+FA +PGM
Sbjct  248  QIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGM  307

Query  307  PTLVFILIALITGCVGYYLVRQRQRQAEPANEAAEVVRPEENGKEDLRGFDPSRPYLLQF  366
            PT+VF+ IA+I  C G  L++  + ++   ++ A    PE+NG+EDLR F PSR ++LQF
Sbjct  308  PTMVFVTIAII--CCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQF  365

Query  367  SPVLRGTPEVTDLIHGIRQARNSLVANIGLTLPPFEVELDDSLAADEMRFCVHEVPMVRA  426
             P  ++   +  L+  IRQ RN LV N+GLTLP+F +E +  L +DE RF V EVP++RA
Sbjct  366  HPS-QSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRA  424

Query  427  SVVNH-VAVERKALTVEPEHAIP-GLAERdeqdwlwlppddplledpeleRFTATHLILE  484
            +  +  VA++  + ++E ++  + G +ER+E +W+W+P D  LL++++ + ++++ LI+E
Sbjct  425  TFSETLVAIDGSSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQPISPSTLIIE  484

Query  485  RMRQAMMLSGPQFLGIQESKSILSWLEHNQPELVQELQRIMPLSR-FSAVLQRLASEGVP  543
            RM +A+ + GPQF+G+QE+K+IL+WLE +QPEL QELQR+MPLSR FS+     A+ G  
Sbjct  485  RMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGA----AAVGFR  540

Query  544  LRAV---RLIVESLIEYGQHEREPEALADYARIALKAQIYHQYSEADGLHAWLLSPQSEN  600
            +RA     +I E+LIE GQHER+  AL+DY RIALK+ IY+QY   +GL  WL++P+SE 
Sbjct  541  MRAAARYPVIAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWLFTPESEG  600

Query  601  ILREALRQTQTGVFFALDENHSAAFISLLNQAFVLRAKSKSVMLVAQDLRSPLRTLLLEE  660
            ILR++LRQTQT  FFAL+ + S  ++  L  AF  R+  ++VMLVAQDLR+PLRTLL +E
Sbjct  601  ILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDE  660

Query  661  FNHVPVLSFAELGSTSKVKVLGRIDLGQE  689
            F+HVPVLSFAE+ ++S VKVLGR+DL +E
Sbjct  661  FHHVPVLSFAEITNASEVKVLGRFDLENE  689

22) Marme_1079 in NC_015276


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  640 bits (2418),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/702 (61%), Positives = 564/702 (81%), Gaps = 17/702 (2%)

Query  1    MNKLFILLNTFAITMMKRSEIVGAVFVLAIVFMMIIPMPTGLVDFlialnislssllial  60
            MN ++ LLN +A++ M+RSE+VGA +VLAIVFMMI P+PT LVD+LIA+NI +S LLI L
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  61   aMYLPSPLAFSSFPAVLLLTTMFRLALSISTTRLILLEQDAGDIVEAFGNFVVGGNLAVG  120
            AM LP PLAFS+FP+VLL+TTMFRLALSI+TTRLILL+QDAG+IVEAFG+FVVGGNLAVG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLLAPQEARFKRE  180
            +VIF+ILTVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA L++ +EA+ +R 
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  181  QLGKESQLFGAMDGAMKFVKGDAIAGLIIVFINLIGGFSIGTLQHDMSASESMHLYSVLT  240
            +LGKESQLFGAMDGAMKFV+GDAIA+LIIV IN+IGG++IG +QH+M+A+++++LYSVLT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVAPDNQEIDANIGREMAQQISSQPKAWIIAACGLLG  300
            IGDGLIAQIPALLIS+TAGMIITRV+ ++    ANIGRE+A+QI+SQPKAWIIA+ ++LG
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLG  300

Query  301  FAILPGMPTVSFLSLAIVFLLCGGFQLYKAMKIRQFQQQESDQTATPAENGDEDLRRFNP  360
            FA +PGMPT+ F+++AI+   C G  L +  + +   +Q+    +TP +NG+EDLR F P
Sbjct  301  FAAMPGMPTMVFVTIAII---CCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLP  357

Query  361  SRPYLLLFNPIRSTPNDPFTVQLIREARRCRNRIVDTFGITLPSFDIDYDATLGEDEFCF  420
            SR ++L F+P +S         L+ E R+ RNR+V  FG+TLPSF I+Y+A L  DEF F
Sbjct  358  SRQFVLQFHPSQSLER---IEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRF  414

Query  421  CVYEVPYIRATYTPDLIALNASELTEEELGKEDFKDRRTGSPEREEERWLWIPSTSPLTQ  480
             VYEVP +RAT++  L+A+++S  + E+   +++     GS+ER+E +W+W+P+ + L +
Sbjct  415  TVYEVPVLRATFSETLVAIDGSSQAIEN--DQQYS---KGSSERQESQWIWVPTDAELLN  469

Query  481  NESYTFTLPirlilerlerAFFATGPQFIGLQEAKTFVSWIEMEQPELAQELQRIVPTSR  540
            N +     P  LI+ER+ERA+   GPQFIGLQE+K++++W+E EQPELAQELQR++P SR
Sbjct  470  NSNTQPISPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSR  529

Query  541  FASVLKRLAAESVPLRAIRP---IAEALIEHGQYERDTGALTDFVRISLKAQICHQYTSD  597
               V+   AA +  +RA      IAE+LIEHGQ ERD  ALTD+VRI+LK+ I +QY S+
Sbjct  530  ---VFSGAAAVGFRMRAAARYPVIAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQ  586

Query  598  QGMHVWLLTPEAEETLRDSLRQTQTESFFALSREANQSLVEQLRDAFPILATPIPVLLVA  657
            +G+ VWL+TPE+E  LRDSLRQTQTE+FFAL+ E++  LV+QLR AFP  ++  +V+LVA
Sbjct  587  EGLLVWLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVA  646

Query  658  QDLRRILRNLLQDEFNHIPVLSFTELQSTSHVNVLGHISLDG  699
            QDLR  LR LLQDEF+H+PVLSF+E+ ++S+V+VLG++ L+ 
Sbjct  647  QDLRAPLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDLEN  688

23) hrcV in NC_014500


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  622 bits (2350),  Expect = 2e-179, Method: Compositional matrix adjust.
 Identities = 438/696 (63%), Positives = 561/696 (81%), Gaps = 15/696 (2%)

Query  1    MAVLIAWLNRFAMSAMQRSEvvgavivmaivfmmiiPLPTGLIDVLIAFNICISSLLIVL  60
            M ++I  LNR+A++AM+RSEVVGA IV+AIVFMMI P+PT L+D+LIA NICIS LLI+L
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLAVG  120
            AM LP+PLAFSTFP+VLL+TTMFRLALSI+TTR ILL+QDAGH+VEAFG+FVVGGNLAVG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFMILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIDAQQARQRRE  180
            +VIFMILTVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI  ++A++RR 
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQNGMAAGDAMHIYSVLT  240
            +L+KESQLFGAMDGAMKFV+GDAIASL+IV INMIGG++IGV+Q+GM+AGDA+++YSVLT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKMDNNIGREIAEQLTSQPKAWIISSVGMLG  300
            IGDGLIAQIPALLIS+TAGMIITRV+ ++     NIGREIAEQ+TSQPKAWII+S +MLG
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLG  300

Query  301  FALLPGMPTlvfllislvslgsglfQLWRVKQSGLQDSLLADDGMPAEQNGYQDLRRFNP  360
            FA +PGMPT+VF+ I+++  G+GL+Q+ R K  G QD         +E+NG +DLR F P
Sbjct  301  FAAMPGMPTMVFVTIAIICCGGGLLQINRAKPKGNQDQ---AAPTTPENNGQEDLRMFLP  357

Query  361  TRAYLLQFHTVWQGAAAAAVLVQDIRRLRNRLVYHFGFTLPSFDIEFNPSVPEDEFRFCV  420
            +R ++LQFH   Q+      LV +IR+ RNRLV +FG+TLPSF IE+++ +  DEFRF V
Sbjct  358  SRQFVLQFHPS-QSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTV  416

Query  421  YEIPQLRASFGVPLLAVPRGQLPEAMQDDAMMPGLSARDEHHLLWLTPEHPLLQQPELSP  480
            YE+P LRA+F+  L+A+  G      +D+    G S R+E + +W+  +  LL++++  P
Sbjct  417  YEVPVLRATFSETLVAID-GSSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP  475

Query  481  WSPDALILSRMENAIHRSGAQFIGLQETKSIlawleaeqpelaqelqRIMPLSR-FASVL  539
             SP +LI+ RME A++  G+QFIGLQETK+IL+WLE+EQPELAQELQR+MPLSR F++  
Sbjct  476  ISPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGAA  535

Query  540  Q---RL-ASERVPLRSVRPIAEALIEIGQHERDINALTDYVRLELKAQICHQYSQDDSLT  595
                R+ A+ R P+     IAE+LIE GQHERD+ ALTDYVR+ LK+ I +QY  +++L 
Sbjct  536  AVGFRMRAAARYPV-----IAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLL  590

Query  596  VWLLTPETEELLRDALRQTQNETFFALTQEYAATLLGLLRRAFPPMTPPSALILVAQDLR  655
            VWL+TPE+E +LRD+LRQTQ ETFFAL  E +  L+  LR AFP  ++  A++LVAQDLR
Sbjct  591  VWLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLR  650

Query  656  SPLRILLQDEFHHVPVLSFTELESHLSINVAGRIDL  691
            +PLR LLQDEFHHVPVLSF+E+ +   ++V GR+DL
Sbjct  651  APLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDL  686

24) H650_14870 in NC_021500


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  480 bits (1809),  Expect = 1e-136, Method: Compositional matrix adjust.
 Identities = 330/682 (49%), Positives = 502/682 (74%), Gaps = 16/682 (2%)

Query  2    VNQTELIGAVIVMTIVFMMVLPLPVFIIDTALSLNICIATLLAIQALFMQHPLAFSTFPA  61
            + ++E++GA IV++IVFMM+ P+P  ++D  +++NICI+ LL + A+ + +PLAFSTFP+
Sbjct  16   MRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPS  75

Query  62   VLLLTTMFRLALSVATTRMILLQHDAGHVVETFGNFVAGGNLAVGLVIFLILTLVNFLVI  121
            VLL+TTMFRLALS+ATTR+ILL++DAGH+VE+FG+FV GGNLAVG+VIF+ILT+VNF+VI
Sbjct  76   VLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVI  135

Query  122  TKGAERVAEVSARFNLDAMPGKQMAIDSDLRSGLIDTADARVRREQLTKESQLFGAMDGA  181
            TKG+ERVAEV+ARF LDAMPGKQM+IDSDLR+ LI   +A+ RR +L KESQLFGAMDGA
Sbjct  136  TKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGA  195

Query  182  MKFVKGDAISGIIIVFINLIGGFSVGILQHGMPAADAMHIYSILSIGDGLVAQipallis  241
            MKFV+GDAI+++IIV IN+IGG+++G++QHGM A+DA+++YS+L+IGDGL+AQIPALLIS
Sbjct  196  MKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLIS  255

Query  242  laagiiiTRVNSDNAASSLNIGGEIIWQLTRHPKAWIYCGIIMALFAVVPGMPAMlfttl  301
            ++AG+IITRV +++AA++ NIG EI  Q+T +PKAWI  +  M  FA +PGMP+M+F T+
Sbjct  256  VTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGMPTMVFVTI  315

Query  302  sllcltlaflltRQEKPRLEMAGQPTPSIVGAEPDNSTELMGYENVRRFFPLRAYllqfh  361
            +++C   ++L   + KP+    +Q++P+     P+N+ +    E++R F+P R ++LQFH
Sbjct  316  AIICCGGGLLQINRAKPK-GNQDQAAPT----TPENNGQ----EDLRMFLPSRQFVLQFH  366

Query  362  pqhqqqpgfeqllqRIYALRNDTVFEYGLTLPSFELEGNAQLAPDEFRFCVYEVPVIRAT  421
            P +  +     + + I   RN  V ++GLTLPSF +E +A+L PDEFRF VYEVPV+RAT
Sbjct  367  PSQSLERIEALVSE-IRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRAT  425

Query  422  YDPDKCAVTAR---LVAEDDGTSGLEEREEQGLRWFDVDDHRLSQYETEKRTSGDLILAR  478
            +     A+ +    +  +++ + G  ER+E    W   D + L++ +T+  +++ LI+ R
Sbjct  426  FSETLVAIDGSSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQPISPSTLIIER  485

Query  479  MRRAILSTGWKFVGLQESKALIDWLRSEQPELADELERCLPIAW-FSAVLQRLAAERVTL  537
            M RA+   G +F+GLQE+KA+++WL +EQPELA+EL+R +P+++ FS+        R + 
Sbjct  486  MERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSGAAAVGFRMRAAA  545

Query  538  RPLRLIAETLIKHSRHESNLMVLTELVRHALREQICYQYSQHETLNSWLLAPATEAVFRQ  597
            R   +IAETLI H++HE +++ LT+ VR AL+  I  QY  +E L  WL++P +E+++R+
Sbjct  546  R-YPVIAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWLFTPESEGILRD  604

Query  598  ALNAEGAQS-MTLSSVMHEALLARLAQCFPTDEGTPSVLLVEPELRGPLSGLLRESSTLV  656
            +L    +++  +L+S     L+ +L   FP   +  +V+LV  +LR+PL  LL++    V
Sbjct  605  SLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHV  664

Query  657  PVLAFSELIPSIKVQIQGRIDL  678
            PVL+F+E+  +  V++ GR+DL
Sbjct  665  PVLSFAEITNASEVKVLGRFDL  686

25) HCH_05101 in NC_007645


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  376 bits (1412),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 283/687 (42%), Positives = 488/687 (72%), Gaps = 32/687 (4%)

Query  13   QRNDVVLAIFLVGIIFMMILPMPTMLVDVMIAINMGVSVILLMLALYIKSPLDFSVFPSM  72
            +R++VV A+++++I+FMMI P+PT LVD++IA+N+ +S +L+MLA+ +  PL FS FPS+
Sbjct  17   RRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSV  76

Query  73   LLITTMFRLALSITTTRLILLQADAGQIVYtfgnfvvggnlvvggvifliltivQFLVIT  132
            LLITTMFRLALSI+TTRLILL+ DAG+IV +FG+FVVGGNL VG VIF+ILT+V+F+VIT
Sbjct  77   LLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVIT  136

Query  133  KGSERVAEVSARFSLDSMPGKQMSIDGDMRAGVIDMEEARVRRAKVEKESQLYGSMDGAM  192
            KGSERVAEV+ARF+LD+MPGKQMSID+D+RA +I ++EA+ RR+ + KESQL+G+MDGAM
Sbjct  137  KGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAM  196

Query  193  KFVKGDAIAGLIITAVNILGGILVGVTQNGLSAGDAAAIYSVLTIGDGLVAQIPALFISI  252
            KFV+GDAIA+LII A+N++GGI +GV Q+G++AGDA  +YSVLTIGDGL+AQIPAL+IS+
Sbjct  197  KFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISV  256

Query  253  TAGFIVTRVSTDES---ENLGRDIGGQIGAQPKalfiggalllgfaMIPGFPTMVFLVLA  309
            TAG I+TRV+ +++    N+GR+I+ QI +QPKA +I++A +LGFA +PG PTMVF+ +A
Sbjct  257  TAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  310  GLICSIGFIMSRKARHADTDDDDIPAMAAAGQTRTPSKTPEKD--DFSPTVPLLLDVAAS  367
             + C+ G++   +A+  + +D+  P+        TP +  + D   F P+  ++L+  +S
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPT--------TPENNGQEDLRMFLPSRQFVLQFHPS  368

Query  368  CQQMLKPSELNAELYRVRRALYLDLGVPFPGIHLRFNESMKDGEYTILMHEVPVAQGRLP  427
             Q + +   L +E+ + R  L +++G+ +P++ + ++  +  +E+ + + EVPV ++ + 
Sbjct  369  -QSLERIEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-  426

Query  428  ADKVVVLQDQEQLDILGIPHQQGELAMSANPY-WVEKSHAPAMENAGIEYLDAPRLLIYH  486
            ++ +V +++  Q    +    +G      +   WV  ++A  ++N+  + + ++ L+I +
Sbjct  427  SETLVAIDGSSQAIENDQQYSKGSSERQESQWIWVP-TDAELLNNSNTQPISPSTLIIER  485

Query  487  LSFILKRYASEFIGLQECRYLLDQMEGQYGDLVKEVQRVVPIQRIAEILQRLVSEDISIR  546
            +   L+  +++FIGLQE + +L+ +E +  +L +E+QRV+P+ R+        +  +++R
Sbjct  486  MERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR  540

Query  547  NLRA------IMEALVEWGQKEKDTVLLTEYVRKSLSRYISYKFCNGQNVLPAYMLDQDL  600
             +RA      I E+L+E GQ E+D + LT+YVR +L   I  ++C+ + +L   ++  + 
Sbjct  541  -MRAAARYPVIAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPES  598

Query  601  EESIRGGIRQTSSGAYLALDPDTTQNFINELHREVGDLDALQHKPVLLVSMDIRRYVRKM  660
            E  +R+++RQT + +++AL+++++  ++++L+    +  +  +++V+LV+ D+R  +R +
Sbjct  599  EGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSS--ERAVMLVAQDLRAPLRTL  656

Query  661  IERDFFELCVLSYQELTQDITVQPISR  687
            ++ +F ++ VLS+ E+T+   V+ ++R
Sbjct  657  LQDEFHHVPVLSFAEITNASEVKVLGR  683

26) NH44784_014751 in NC_021285


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  353 bits (1326),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 291/701 (42%), Positives = 489/701 (70%), Gaps = 29/701 (4%)

Query  4    LNRVVAAATSRNDIVLAVLIVSIIFMMILPLPTTLVDVLIGANMTLSAILLMVAMYlpsp  63
            LNR+  AA  R+++V A ++++I+FMMI P+PT LVD+LI+ N+ +S +L+M+AM LP P
Sbjct  8    LNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRP  67

Query  64   lafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivglvvflil  123
            LAFS+FPSVLL+TT+FRL++SIATTRLILL+ DAGHI+E+FG+FVVGGNL VG+V+F+IL
Sbjct  68   LAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMIL  127

Query  124  TIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARKRRSVVEKESQ  183
            T+V+F+VITKG+ERVAEV+ARF+LDAMPGKQMSID+DLRA  I ++EA++RRS + KESQ
Sbjct  128  TVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQ  187

Query  184  LYGAMDGAMKFVKGDAIAGLIIVAVNLLGGILIGTMQRGLSAGEAVQVYSILTIGDGLIA  243
            L+GAMDGAMKFV+GDAIA+LIIVA+N++GGI IG +Q+G++AG+AVQ+YS+LTIGDGLIA
Sbjct  188  LFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIA  247

Query  244  QIPALFIAICAGIIVTRVQTGD--GPSNVGKDIGAQVLAQPRalliaaaiaigmglipgm  301
            QIPAL+I++ AG+I+TRV   D  GP+N+G++I+ Q+ +QP+A +IA+A  +G + +PGM
Sbjct  248  QIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGM  307

Query  302  pTLTFLALAAVVGTIGFVLLRGTRKVVDEKTGEITEIPALAADGQKPQARPRADGSAE--  359
            PT+ F+++A +    G++              +I    + + ++Q + + P  +G  +  
Sbjct  308  PTMVFVTIAIICCGGGLL--------------QINRAKPKGNQDQAAPTTPENNGQEDLR  353

Query  360  -FAPT--LPLMIDVAAALQRSFDADELNEELLKIRRALYFDLGVPFPGIQLRFNDALPAD  416
             F P+  + L ++ + +L+R    + L  E+ + R  L  ++G+ +P++ + ++  L +D
Sbjct  354  MFLPSRQFVLQFHPSQSLER---IEALVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPD  410

Query  417  SYNILLSEVPVSQGKLRPGAVLVRDTEQNLQALQVPYETDKRFLPNVPTLWVDAGLAPTL  476
             + + + EVPV ++ +    V + ++ Q ++  +  Y  +     +   +WV ++ A  L
Sbjct  411  EFRFTVYEVPVLRATFSETLVAIDGSSQAIEN-DQQYSKGSSERQESQWIWVPTD-AELL  468

Query  477  TAAGIPFLDPHQVLTWHLAFVLKKYSSDFIGIQETRFLLTAMEDRFPDLVKEALRVMPVQ  536
              +    + P  ++  ++   L+  +++FIG+QET+ +L  +E   P+L +E  RVMP+ 
Sbjct  469  NNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLS  528

Query  537  KIAEILQRLVSEDISVRNLRAVLEALIEWGQKEKDSVLLTEYVRVSLKRHISYKYSSGQN  596
            ++      +     +      + E+LIE GQ E+D + LT+YVR++LK  I  +Y S + 
Sbjct  529  RVFSGAAAVGFRMRAAARYPVIAETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEG  588

Query  597  ILPAYLLAPNVEETVRGAIRQTSAGSYLALDPNASRKLVDNIKRVAGDLTAAAQKPVLLT  656
            +L   L++P+ E  +R+++RQT + +++AL++++S  LV++++    +   +++++V+L 
Sbjct  589  LL-VWLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQ--RSSERAVMLV  645

Query  657  SMDIRRYLRKMIEQDLYELPVLSYQELTQEINVQPLARVDL  697
            + D+R  LR ++++++ ++PVLS+ E+T+  +V+ L+R DL
Sbjct  646  AQDLRAPLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDL  686

27) M892_04485 in NC_022269


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  340 bits (1276),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 287/713 (41%), Positives = 505/713 (71%), Gaps = 41/713 (5%)

Query  1    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLML  56
            MN +ID+LN+++    +R +++ A ++LAIVFMMI P+PT LVD+LI+ N+ I+ +L+ML
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  57   AIYITKPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  116
            A+ + +PL FS+FP+VLLITT+FRL+LSI+TTRLILL+ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  117  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  176
            +V+F+I+T+V+FMVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I VHEA++RRS
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  177  LIEKESQMYGSMDGAMKFVKGDSIAgliiivvnilggvtigvtQKGMSASEALELFAILT  236
             + KESQ++G+MDGAMKFV+GD+IA+LII+ +N++GG+TIGV Q GM+A++A++L+++LT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  237  VGDGLVSQIPALFIAITAGIIVTRVSNEDS---SDLGSDIGGQVTAQPRALLVGGVLLIL  293
            +GDGL++QIPAL+I++TAG+I+TRV+NED+   +++G +I+ Q+T+QP+A ++++  ++ 
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLG  300

Query  294  FALIPGFPKVTFLILAAIVGGGGFFLFYQQKKQSEYDSSDLPSFVAQGAGSPAAKPNKPT  353
            FA +PG P + F+ +A I  GGG++ + + K                    P ++ ++++
Sbjct  301  FAAMPGMPTMVFVTIAIICCGGGLLQINRAK--------------------PKGNQDQAA  340

Query  354  PSRNSKGKLGEQEEFAMTVPLLIDLDSRLQESLEAV-ALNDELARVRRALYLDLGVPFPG  412
            P+   +    +   F  +  +++++++   +SLE + AL  E+ + R  L +++G+ +P+
Sbjct  341  PTTPENNGQEDLRMFLPSRQFVLQFHP--SQSLERIEALVSEIRQRRNRLVVNFGLTLPS  398

Query  413  IHLRFNEGMSNGEYLIQLQEVPVARGRIESEKLLVTEGNEQIDLLGVPYEKDDDFLPGIT  472
            + + ++  +  +E+ + + EVPV R+ + SE L+  +G+ Q    +  Y K+        
Sbjct  399  FIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDGSSQAIENDQQYSKGSSERQESQ  457

Query  473  SIWVDQSHHEKLQNSHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMESSYSE  532
             IWV  ++ E L+NS+   ++P  ++  ++ + L+  + +FIG+QET+ +L  +E+  +E
Sbjct  458  WIWV-PTDAELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPE  516

Query  533  LVKEAQRIVPLQKMTEILQRLVSEDISIRNL---RVILEAMVEWGQKEKDVVQLTEYIRS  589
            L +E QR++PL +   ++    + ++ +R      VI E+++E GQ E+DV+ LT+Y+R 
Sbjct  517  LAQELQRVMPLSR---VFSGAAAVGFRMRAAARYPVIAETLIEHGQHERDVLALTDYVRI  573

Query  590  SLKRYICYKYASGQNMLPAYLLDQSLEDTIRNGIRQTSAGSYLALDPSVTQQFVSDVKQT  649
            +LK  I  +Y S + +L   L+    E+ +R+++RQT + +++AL++  +  +V +++ +
Sbjct  574  ALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMA  632

Query  650  IGDLSRMPNKPVLVVSMDVRRYVRKLIESEYYELPVLSFQELTQQINIQPLGR  702
            + +  R ++++V++V+ D+R  +R L++ E+ ++PVLSF E+T+  +++ LGR
Sbjct  633  FPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEVKVLGR  683

28) VIBHAR_01736 in NC_009783


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  340 bits (1276),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 287/713 (41%), Positives = 505/713 (71%), Gaps = 41/713 (5%)

Query  1    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLML  56
            MN +ID+LN+++    +R +++ A ++LAIVFMMI P+PT LVD+LI+ N+ I+ +L+ML
Sbjct  1    MNLIIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIML  60

Query  57   AIYITKPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  116
            A+ + +PL FS+FP+VLLITT+FRL+LSI+TTRLILL+ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVG  120

Query  117  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  176
            +V+F+I+T+V+FMVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I VHEA++RRS
Sbjct  121  MVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRS  180

Query  177  LIEKESQMYGSMDGAMKFVKGDSIAgliiivvnilggvtigvtQKGMSASEALELFAILT  236
             + KESQ++G+MDGAMKFV+GD+IA+LII+ +N++GG+TIGV Q GM+A++A++L+++LT
Sbjct  181  ELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLT  240

Query  237  VGDGLVSQIPALFIAITAGIIVTRVSNEDS---SDLGSDIGGQVTAQPRALLVGGVLLIL  293
            +GDGL++QIPAL+I++TAG+I+TRV+NED+   +++G +I+ Q+T+QP+A ++++  ++ 
Sbjct  241  IGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLG  300

Query  294  FALIPGFPKVTFLILAAIVGGGGFFLFYQQKKQSEYDSSDLPSFVAQGAGSPAAKPNKPT  353
            FA +PG P + F+ +A I  GGG++ + + K                    P ++ ++++
Sbjct  301  FAAMPGMPTMVFVTIAIICCGGGLLQINRAK--------------------PKGNQDQAA  340

Query  354  PSRNSKGKLGEQEEFAMTVPLLIDLDSRLQESLEAV-ALNDELARVRRALYLDLGVPFPG  412
            P+   +    +   F  +  +++++++   +SLE + AL  E+ + R  L +++G+ +P+
Sbjct  341  PTTPENNGQEDLRMFLPSRQFVLQFHP--SQSLERIEALVSEIRQRRNRLVVNFGLTLPS  398

Query  413  IHLRFNEGMSNGEYLIQLQEVPVARGRIESEKLLVTEGNEQIDLLGVPYEKDDDFLPGIT  472
            + + ++  +  +E+ + + EVPV R+ + SE L+  +G+ Q    +  Y K+        
Sbjct  399  FIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDGSSQAIENDQQYSKGSSERQESQ  457

Query  473  SIWVDQSHHEKLQNSHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMESSYSE  532
             IWV  ++ E L+NS+   ++P  ++  ++ + L+  + +FIG+QET+ +L  +E+  +E
Sbjct  458  WIWV-PTDAELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAILGWLETEQPE  516

Query  533  LVKEAQRIVPLQKMTEILQRLVSEDISIRNL---RVILEAMVEWGQKEKDVVQLTEYIRS  589
            L +E QR++PL +   ++    + ++ +R      VI E+++E GQ E+DV+ LT+Y+R 
Sbjct  517  LAQELQRVMPLSR---VFSGAAAVGFRMRAAARYPVIAETLIEHGQHERDVLALTDYVRI  573

Query  590  SLKRYICYKYASGQNMLPAYLLDQSLEDTIRNGIRQTSAGSYLALDPSVTQQFVSDVKQT  649
            +LK  I  +Y S + +L   L+    E+ +R+++RQT + +++AL++  +  +V +++ +
Sbjct  574  ALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMA  632

Query  650  IGDLSRMPNKPVLVVSMDVRRYVRKLIESEYYELPVLSFQELTQQINIQPLGR  702
            + +  R ++++V++V+ D+R  +R L++ E+ ++PVLSF E+T+  +++ LGR
Sbjct  633  FPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEVKVLGR  683

29) bcrD in NC_018829


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  337 bits (1265),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 288/678 (43%), Positives = 477/678 (71%), Gaps = 35/678 (5%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI P+PT LVD+LI+ N+ +S +L+M+AM LP PLAFS+FPSVLL+TT+FRL++SIAT
Sbjct  32   FMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIAT  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VG+V+F+ILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I ++EA+RRR  + KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDS-  272
            +N++GG+ +GV+Q+G++AG+AVQ Y++LTIGDGLIAQIPAL+I++ AG+I+TRV   D+ 
Sbjct  212  INMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAA  271

Query  273  -PSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQ  331
             P+N+G +I+ Q+ +QP+A +IA+A   G++ +PGMPT+VF ++A +    G  LL+ ++
Sbjct  272  GPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGMPTMVFVTIAIICCGGG--LLQINR  329

Query  332  RPPEGAEPALAGMAADGQPRTRAPADGQAE---FAPTVPLIIDV-AARLQPRFEPATLTD  387
              P G +        D  + T +  +GQ +   F P+  ++++  +++   R+E  +L  
Sbjct  330  AKPKGNQ--------DQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIE--ALVS  379

Query  388  DLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQN  447
            ++ Q R  L  ++G+ +P++ + +   L ++ + + + E+PV ++ + +  V + ++ Q 
Sbjct  380  EIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQA  439

Query  448  LQALRIAYETGAAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADF  507
            ++  +  Y  G++   ++  IWV++  +  L ++    ++ S ++  ++   L+  +++F
Sbjct  440  IENDQ-QYSKGSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQF  497

Query  508  IGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRA------VL  561
            IG+QET+ +L+ +E   P+L +E  RVMP+ ++        +  V++R +RA      + 
Sbjct  498  IGLQETKAILGWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIA  551

Query  562  EALVEWGQKEKDTVLLTEYVRIALKRYISHKYTSGHNILPAYLLAPKVEETVRAAIRQTA  621
            E+L+E GQ E+D + LT+YVRIALK  I ++Y S + +L   L++P  E  +R ++RQT 
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQ  610

Query  622  AGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLS  681
            + +++AL+++++  LV+++R    +   ++ R+V+L + D+R   R +++ ++  +PVLS
Sbjct  611  TETFFALNSESSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLS  668

Query  682  YQELTPEINVQPLGRVDL  699
            + E+T   +V+ LGR DL
Sbjct  669  FAEITNASEVKVLGRFDL  686

30) bcrD in NC_018518


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  337 bits (1263),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 289/678 (43%), Positives = 475/678 (71%), Gaps = 35/678 (5%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI P+PT LVD+LI+ N+ +S +L+M+AM LP PLAFS+FPSVLL+TT+FRL++SIAT
Sbjct  32   FMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIAT  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VG+V+F+ILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I ++EA+RRR  + KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGD--  271
            +N++GG+ +GV+Q+G++AG+AVQ Y++LTIGDGLIAQIPAL+I++ AG+I+TRV   D  
Sbjct  212  INMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAA  271

Query  272  GPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAAVGTIGFVLLRASQ  331
            GP+N+G +I+ Q+ +QP+A +IA+A   G++ +PGMPT+VF ++A      G  LL+ ++
Sbjct  272  GPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGMPTMVFVTIAIICCGGG--LLQINR  329

Query  332  RPPEGAEPALAGMAADGQPRTRAPADGQAE---FAPTVPLIIDV-AARLQPRFEPATLTD  387
              P G +        D  + T +  +GQ +   F P+  ++++  +++   R+E  +L  
Sbjct  330  AKPKGNQ--------DQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIE--ALVS  379

Query  388  DLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQN  447
            ++ Q R  L  ++G+ +P++ + +   L ++ + + + E+PV ++ + +  V + ++ Q 
Sbjct  380  EIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQA  439

Query  448  LQALRIAYETGAAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSTDF  507
            ++  +  Y  G++   ++  IWV++  +  L ++    ++ S ++  ++   L+  + +F
Sbjct  440  IENDQ-QYSKGSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQF  497

Query  508  IGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRA------VL  561
            IG+QET+ +L+ +E   P+L +E  RVMP+ ++        +  V++R +RA      + 
Sbjct  498  IGLQETKAILGWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIA  551

Query  562  EALVEWGQKEKDTVLLTEYVRIALKRYISHKYTSGHNILPAYLLAPKVEETVRAAIRQTA  621
            E+L+E GQ E+D + LT+YVRIALK  I ++Y S + +L   L++P  E  +R ++RQT 
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQ  610

Query  622  AGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLS  681
            + +++AL+++++  LV+++R    +   ++ R+V+L + D+R   R +++ ++  +PVLS
Sbjct  611  TETFFALNSESSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLS  668

Query  682  YQELTPEINVQPLGRVDL  699
            + E+T   +V+ LGR DL
Sbjct  669  FAEITNASEVKVLGRFDL  686

31) bcrD in NC_017223


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  337 bits (1263),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 289/678 (43%), Positives = 476/678 (71%), Gaps = 35/678 (5%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI P+PT LVD+LI+ N+ +S +L+M+AM LP PLAFS+FPSVLL+TT+FRL++SIAT
Sbjct  32   FMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIAT  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VG+V+F+ILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I ++EA+RRR  + KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGD--  271
            +N++GG+ +GV+Q+G++AG+AVQ Y++LTIGDGLIAQIPAL+I++ AG+I+TRV   D  
Sbjct  212  INMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAA  271

Query  272  GPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAAVGTIGFVLLRASQ  331
            GP+N+G +I+ Q+ +QP+A +IA+A   G++ +PGMPT+VF ++A      G  LL+ ++
Sbjct  272  GPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGMPTMVFVTIAIICCGGG--LLQINR  329

Query  332  RPPEGAEPALAGMAADGQPRTRAPADGQAE---FAPTVPLIIDV-AARLQPRFEPATLTD  387
              P G +        D  + T +  +GQ +   F P+  ++++  +++   R+E  +L  
Sbjct  330  AKPKGNQ--------DQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIE--ALVS  379

Query  388  DLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQN  447
            ++ Q R  L  ++G+ +P++ + +   L ++ + + + E+PV ++ + +  V + ++ Q 
Sbjct  380  EIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQA  439

Query  448  LQALRIAYETGAAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADF  507
            ++  +  Y  G++   ++  IWV++  +  L ++    ++ S ++  ++   L+  +++F
Sbjct  440  IENDQ-QYSKGSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQF  497

Query  508  IGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRA------VL  561
            IG+QET+ +L+ +E   P+L +E  RVMP+ ++        +  V++R +RA      + 
Sbjct  498  IGLQETKAILGWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIA  551

Query  562  EALVEWGQKEKDTVLLTEYVRIALKRYISHKYTSGHNILPAYLLAPKVEETVRAAIRQTA  621
            E+L+E GQ E+D + LT+YVRIALK  I ++Y S + +L   L++P  E  +R ++RQT 
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQ  610

Query  622  AGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLS  681
            + +++AL+++++  LV+++R    +   ++ R+V+L + D+R   R +++ ++  +PVLS
Sbjct  611  TETFFALNSESSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLS  668

Query  682  YQELTPEINVQPLGRVDL  699
            + E+T   +V+ LGR DL
Sbjct  669  FAEITNASEVKVLGRFDL  686

32) bcrD in NC_002929


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  337 bits (1263),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 289/678 (43%), Positives = 476/678 (71%), Gaps = 35/678 (5%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI P+PT LVD+LI+ N+ +S +L+M+AM LP PLAFS+FPSVLL+TT+FRL++SIAT
Sbjct  32   FMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIAT  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VG+V+F+ILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I ++EA+RRR  + KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGD--  271
            +N++GG+ +GV+Q+G++AG+AVQ Y++LTIGDGLIAQIPAL+I++ AG+I+TRV   D  
Sbjct  212  INMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAA  271

Query  272  GPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAAVGTIGFVLLRASQ  331
            GP+N+G +I+ Q+ +QP+A +IA+A   G++ +PGMPT+VF ++A      G  LL+ ++
Sbjct  272  GPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGMPTMVFVTIAIICCGGG--LLQINR  329

Query  332  RPPEGAEPALAGMAADGQPRTRAPADGQAE---FAPTVPLIIDV-AARLQPRFEPATLTD  387
              P G +        D  + T +  +GQ +   F P+  ++++  +++   R+E  +L  
Sbjct  330  AKPKGNQ--------DQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIE--ALVS  379

Query  388  DLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQN  447
            ++ Q R  L  ++G+ +P++ + +   L ++ + + + E+PV ++ + +  V + ++ Q 
Sbjct  380  EIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQA  439

Query  448  LQALRIAYETGAAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADF  507
            ++  +  Y  G++   ++  IWV++  +  L ++    ++ S ++  ++   L+  +++F
Sbjct  440  IENDQ-QYSKGSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQF  497

Query  508  IGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRA------VL  561
            IG+QET+ +L+ +E   P+L +E  RVMP+ ++        +  V++R +RA      + 
Sbjct  498  IGLQETKAILGWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIA  551

Query  562  EALVEWGQKEKDTVLLTEYVRIALKRYISHKYTSGHNILPAYLLAPKVEETVRAAIRQTA  621
            E+L+E GQ E+D + LT+YVRIALK  I ++Y S + +L   L++P  E  +R ++RQT 
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQ  610

Query  622  AGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLS  681
            + +++AL+++++  LV+++R    +   ++ R+V+L + D+R   R +++ ++  +PVLS
Sbjct  611  TETFFALNSESSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLS  668

Query  682  YQELTPEINVQPLGRVDL  699
            + E+T   +V+ LGR DL
Sbjct  669  FAEITNASEVKVLGRFDL  686

33) bcrD in NC_019382


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  336 bits (1260),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 289/678 (43%), Positives = 475/678 (71%), Gaps = 35/678 (5%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI P+PT LVD+LI+ N+ +S +L+M+AM LP PLAFS+FPSVLL+TT+FRL++SIAT
Sbjct  32   FMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIAT  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VG+V+F+ILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I ++EA+RRR  + KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGD--  271
            +N++GG+ +GV+Q+G++AG+AVQ Y++LTIGDGLIAQIPAL+I++ AG+I+TRV   D  
Sbjct  212  INMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAA  271

Query  272  GPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQ  331
            GP+N+G +I+ Q+ +QP+A +IA+A   G++ +PGMPT+VF ++A +    G  LL+ ++
Sbjct  272  GPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGMPTMVFVTIAIICCGGG--LLQINR  329

Query  332  RPPEGAGPALAGMAADGQPRTRAPADGQAE---FAPTVPLIIDV-AARLQPRFEPATLTD  387
              P G          D  + T +  +GQ +   F P+  ++++  +++   R+E  +L  
Sbjct  330  AKPKG--------NQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIE--ALVS  379

Query  388  DLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQN  447
            ++ Q R  L  ++G+ +P++ + +   L ++ + + + E+PV ++ + +  V + ++ Q 
Sbjct  380  EIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQA  439

Query  448  LQALRIAYETGAAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADF  507
            ++  +  Y  G++   ++  IWV++  +  L ++    ++ S ++  ++   L+  +++F
Sbjct  440  IENDQ-QYSKGSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQF  497

Query  508  IGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRA------VL  561
            IG+QET+ +L+ +E   P+L +E  RVMP+ ++        +  V++R +RA      + 
Sbjct  498  IGLQETKAILGWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIA  551

Query  562  EALVEWGQKEKDTVLLTEYVRIALKRYISYKYTSGHNILPAYLLAPKVEETVRAAIRQTA  621
            E+L+E GQ E+D + LT+YVRIALK  I  +Y S + +L   L++P  E  +R ++RQT 
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQ  610

Query  622  AGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLS  681
            + +++AL+++++  LV+++R    +   ++ R+V+L + D+R   R +++ ++  +PVLS
Sbjct  611  TETFFALNSESSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLS  668

Query  682  YQELTPEINVQPLGRVDL  699
            + E+T   +V+ LGR DL
Sbjct  669  FAEITNASEVKVLGRFDL  686

34) bcrD in NC_018828


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1259),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 289/678 (43%), Positives = 474/678 (70%), Gaps = 35/678 (5%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI P+PT LVD+LI+ N+ +S +L+M+AM LP PLAFS+FPSVLL+TT+FRL++SIAT
Sbjct  32   FMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIAT  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VG+V+F+ILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I ++EA+RRR  + KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGD--  271
            +N++GG+ +GV+Q+G++AG+AVQ Y++LTIGDGLIAQIPAL+I++ AG+I+TRV   D  
Sbjct  212  INMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAA  271

Query  272  GPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQ  331
            GP+N+G +I+ Q+ +QP+A +IA+A   G++ +PGMPT+VF ++A +    G  LL+ ++
Sbjct  272  GPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGMPTMVFVTIAIICCGGG--LLQINR  329

Query  332  RPPEGAGPALAGMAADGQPRTRAPADGQAE---FAPTVPLIIDV-AARLQPRFEPATLTD  387
              P G          D  + T +  +GQ +   F P+  ++++  +++   R+E  +L  
Sbjct  330  AKPKG--------NQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIE--ALVS  379

Query  388  DLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQN  447
            ++ Q R  L  ++G+ +P++ + +   L ++ + + + E+PV ++ + +  V + ++ Q 
Sbjct  380  EIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQA  439

Query  448  LQALRIAYETGAAFLPDTPTIWVTASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADF  507
            ++  +  Y  G++   ++  IWV +  +  L ++    ++ S ++  ++   L+  +++F
Sbjct  440  IENDQ-QYSKGSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQF  497

Query  508  IGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRA------VL  561
            IG+QET+ +L+ +E   P+L +E  RVMP+ ++        +  V++R +RA      + 
Sbjct  498  IGLQETKAILGWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIA  551

Query  562  EALVEWGQKEKDTVLLTEYVRIALKRYISYKYTSGHNILPAYLLAPKVEETVRAAIRQTA  621
            E+L+E GQ E+D + LT+YVRIALK  I  +Y S + +L   L++P  E  +R ++RQT 
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQ  610

Query  622  AGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLS  681
            + +++AL+++++  LV+++R    +   ++ R+V+L + D+R   R +++ ++  +PVLS
Sbjct  611  TETFFALNSESSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLS  668

Query  682  YQELTPEINVQPLGRVDL  699
            + E+T   +V+ LGR DL
Sbjct  669  FAEITNASEVKVLGRFDL  686

35) YE105_P0016 in NC_015475


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1258),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 268/665 (41%), Positives = 465/665 (70%), Gaps = 41/665 (6%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+M+A+ +  PL FS+FP+VLL+TT+FRLALS++TTR+ILL+ DAG+IV +FG
Sbjct  50   NICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIF+I+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I V+EA+ RR+ + KESQ+FG+MDGAMKFV+GDAIA+LII+ +N++GG+TIGV Q G++A
Sbjct  170  ISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS---SDLGSDIGKQVVAQPK  283
            ++A+QLYS+LT+GDG+++Q+PALLI++TAG+I+TRV++ED+   +++G +I+ Q+ +QPK
Sbjct  230  GDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSG  343
            A +I++  +L F+ +PG PT+ F+ +A ++ CGG +L  ++++              G+ 
Sbjct  290  AWIIASAAMLGFAAMPGMPTMVFVTIA-IICCGGGLLQINRAK------------PKGNQ  336

Query  344  APAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAI-ALNDELVRVRRALY  402
              AA T +  +G +  R+     F  +  ++++ ++SQ  +LE I AL  E+ + R  L 
Sbjct  337  DQAAPTTPENNGQEDLRM-----FLPSRQFVLQFHPSQ--SLERIEALVSEIRQRRNRLV  389

Query  403  LDLGVPFPGIHLRFNEGMGEGEYLISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEK  462
            +++G+ +P++ + ++  +  +E+ +++ EVPV R+ +    + +  S   +E  +  Y K
Sbjct  390  VNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQAIE-NDQQYSK  448

Query  463  GEHLLPDQETFWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLL  522
            G     + + +WV+ +  E L++S+ + +S S ++  ++ + L+  + +FIG+QET+ +L
Sbjct  449  GSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAIL  507

Query  523  EQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRS------ILEAMVEWGQKE  576
              +E    EL +E+QR++PL R+        +  +++R MR+      I E+++E GQ E
Sbjct  508  GWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIAETLIEHGQHE  561

Query  577  KDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALDPA  636
            +DV+ LT+Y+R +LK  I  +Y + + +L   LF  E E  +R ++RQT + +++AL++ 
Sbjct  562  RDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSE  620

Query  637  VTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINI  696
             +  L++Q+R ++ +  +   ++V++V+ D+R  +R L++ E+  +PVLS+ E+T+  ++
Sbjct  621  SSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEV  678

Query  697  QPLGR  701
            + LGR
Sbjct  679  KVLGR  683

36) Y11_p0841 in NC_017565


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1258),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 268/665 (41%), Positives = 465/665 (70%), Gaps = 41/665 (6%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+M+A+ +  PL FS+FP+VLL+TT+FRLALS++TTR+ILL+ DAG+IV +FG
Sbjct  50   NICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIF+I+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I V+EA+ RR+ + KESQ+FG+MDGAMKFV+GDAIA+LII+ +N++GG+TIGV Q G++A
Sbjct  170  ISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS---SDLGSDIGKQVVAQPK  283
            ++A+QLYS+LT+GDG+++Q+PALLI++TAG+I+TRV++ED+   +++G +I+ Q+ +QPK
Sbjct  230  GDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSG  343
            A +I++  +L F+ +PG PT+ F+ +A ++ CGG +L  ++++              G+ 
Sbjct  290  AWIIASAAMLGFAAMPGMPTMVFVTIA-IICCGGGLLQINRAK------------PKGNQ  336

Query  344  APAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAI-ALNDELVRVRRALY  402
              AA T +  +G +  R+     F  +  ++++ ++SQ  +LE I AL  E+ + R  L 
Sbjct  337  DQAAPTTPENNGQEDLRM-----FLPSRQFVLQFHPSQ--SLERIEALVSEIRQRRNRLV  389

Query  403  LDLGVPFPGIHLRFNEGMGEGEYLISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEK  462
            +++G+ +P++ + ++  +  +E+ +++ EVPV R+ +    + +  S   +E  +  Y K
Sbjct  390  VNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQAIE-NDQQYSK  448

Query  463  GEHLLPDQETFWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLL  522
            G     + + +WV+ +  E L++S+ + +S S ++  ++ + L+  + +FIG+QET+ +L
Sbjct  449  GSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAIL  507

Query  523  EQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRS------ILEAMVEWGQKE  576
              +E    EL +E+QR++PL R+        +  +++R MR+      I E+++E GQ E
Sbjct  508  GWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIAETLIEHGQHE  561

Query  577  KDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALDPA  636
            +DV+ LT+Y+R +LK  I  +Y + + +L   LF  E E  +R ++RQT + +++AL++ 
Sbjct  562  RDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSE  620

Query  637  VTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINI  696
             +  L++Q+R ++ +  +   ++V++V+ D+R  +R L++ E+  +PVLS+ E+T+  ++
Sbjct  621  SSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEV  678

Query  697  QPLGR  701
            + LGR
Sbjct  679  KVLGR  683

37) bcrD in NC_002927


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1257),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 289/678 (43%), Positives = 475/678 (71%), Gaps = 35/678 (5%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI P+PT LVD+LI+ N+ +S +L+M+AM LP PLAFS+FPSVLL+TT+FRL++SIAT
Sbjct  32   FMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIAT  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VG+V+F+ILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I ++EA+RRR  + KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGD--  271
            +N++GG+ +GV+Q+G++AG+AVQ Y++LTIGDGLIAQIPAL+I++ AG+I+TRV   D  
Sbjct  212  INMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAA  271

Query  272  GPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQ  331
            GP+N+G +I+ Q+ +QP+A +IA+A   G++ +PGMPT+VF ++A +    G  LL+ ++
Sbjct  272  GPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGMPTMVFVTIAIICCGGG--LLQINR  329

Query  332  RPPEGAGPALAGMAADGLPRTRAPADGQAE---FAPTVPLIIDV-AARLQPRFEPATLTD  387
              P G          D  + T +  +GQ +   F P+  ++++  +++   R+E  +L  
Sbjct  330  AKPKG--------NQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIE--ALVS  379

Query  388  DLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQN  447
            ++ Q R  L  ++G+ +P++ + +   L ++ + + + E+PV ++ + +  V + ++ Q 
Sbjct  380  EIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQA  439

Query  448  LQALRIAYETGAAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADF  507
            ++  +  Y  G++   ++  IWV++  +  L ++    ++ S ++  ++   L+  +++F
Sbjct  440  IENDQ-QYSKGSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQF  497

Query  508  IGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRA------VL  561
            IG+QET+ +L+ +E   P+L +E  RVMP+ ++        +  V++R +RA      + 
Sbjct  498  IGLQETKAILGWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIA  551

Query  562  EALVEWGQKEKDTVLLTEYVRIALKRYISYKYTSGHNILPAYLLAPKVEETVRAAIRQTA  621
            E+L+E GQ E+D + LT+YVRIALK  I  +Y S + +L   L++P  E  +R ++RQT 
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQ  610

Query  622  AGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLS  681
            + +++AL+++++  LV+++R    +   ++ R+V+L + D+R   R +++ ++  +PVLS
Sbjct  611  TETFFALNSESSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLS  668

Query  682  YQELTPEINVQPLGRVDL  699
            + E+T   +V+ LGR DL
Sbjct  669  FAEITNASEVKVLGRFDL  686

38) lcrD in NC_008791


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1257),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 268/665 (41%), Positives = 465/665 (70%), Gaps = 41/665 (6%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+M+A+ +  PL FS+FP+VLL+TT+FRLALS++TTR+ILL+ DAG+IV +FG
Sbjct  50   NICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIF+I+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I V+EA+ RR+ + KESQ+FG+MDGAMKFV+GDAIA+LII+ +N++GG+TIGV Q G++A
Sbjct  170  ISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS---SDLGSDIGKQVVAQPK  283
            ++A+QLYS+LT+GDG+++Q+PALLI++TAG+I+TRV++ED+   +++G +I+ Q+ +QPK
Sbjct  230  GDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSLLTSGSG  343
            A +I++  +L F+ +PG PT+ F+ +A ++ CGG +L  ++++              G+ 
Sbjct  290  AWIIASAAMLGFAAMPGMPTMVFVTIA-IICCGGGLLQINRAK------------PKGNQ  336

Query  344  APAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAI-ALNDELVRVRRALY  402
              AA T +  +G +  R+     F  +  ++++ ++SQ  +LE I AL  E+ + R  L 
Sbjct  337  DQAAPTTPENNGQEDLRM-----FLPSRQFVLQFHPSQ--SLERIEALVSEIRQRRNRLV  389

Query  403  LDLGVPFPGIHLRFNEGMGEGEYLISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEK  462
            +++G+ +P++ + ++  +  +E+ +++ EVPV R+ +    + +  S   +E  +  Y K
Sbjct  390  VNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQAIE-NDQQYSK  448

Query  463  GEHLLPDQETFWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLL  522
            G     + + +WV+ +  E L++S+ + +S S ++  ++ + L+  + +FIG+QET+ +L
Sbjct  449  GSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAIL  507

Query  523  EQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRS------ILEAMVEWGQKE  576
              +E    EL +E+QR++PL R+        +  +++R MR+      I E+++E GQ E
Sbjct  508  GWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIAETLIEHGQHE  561

Query  577  KDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSAVRQTSAGSYLALDPA  636
            +DV+ LT+Y+R +LK  I  +Y + + +L   LF  E E  +R ++RQT + +++AL++ 
Sbjct  562  RDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSE  620

Query  637  VTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINI  696
             +  L++Q+R ++ +  +   ++V++V+ D+R  +R L++ E+  +PVLS+ E+T+  ++
Sbjct  621  SSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEV  678

Query  697  QPLGR  701
            + LGR
Sbjct  679  KVLGR  683

39) lcrD in NC_010157


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1257),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 268/665 (41%), Positives = 465/665 (70%), Gaps = 41/665 (6%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+M+A+ +  PL FS+FP+VLL+TT+FRLALS++TTR+ILL+ DAG+IV +FG
Sbjct  50   NICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIF+I+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I V+EA+ RR+ + KESQ+FG+MDGAMKFV+GDAIA+LII+ +N++GG+TIGV Q G++A
Sbjct  170  ISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS---SDLGSDIGKQVVAQPK  283
            ++A+QLYS+LT+GDG+++Q+PALLI++TAG+I+TRV++ED+   +++G +I+ Q+ +QPK
Sbjct  230  GDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSG  343
            A +I++  +L F+ +PG PT+ F+ +A ++ CGG +L  ++++              G+ 
Sbjct  290  AWIIASAAMLGFAAMPGMPTMVFVTIA-IICCGGGLLQINRAK------------PKGNQ  336

Query  344  APAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAI-ALNDELVRVRRALY  402
              AA T +  +G +  R+     F  +  ++++ ++SQ  +LE I AL  E+ + R  L 
Sbjct  337  DQAAPTTPENNGQEDLRM-----FLPSRQFVLQFHPSQ--SLERIEALVSEIRQRRNRLV  389

Query  403  LDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEK  462
            +++G+ +P++ + ++  +  +E+ +++ EVPV R+ +    + +  S   +E  +  Y K
Sbjct  390  VNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQAIE-NDQQYSK  448

Query  463  GEHLLPDQEAFWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLL  522
            G     + + +WV+ +  E L++S+ + +S S ++  ++ + L+  + +FIG+QET+ +L
Sbjct  449  GSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAIL  507

Query  523  EQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRS------ILEAMVEWGQKE  576
              +E    EL +E+QR++PL R+        +  +++R MR+      I E+++E GQ E
Sbjct  508  GWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIAETLIEHGQHE  561

Query  577  KDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPA  636
            +DV+ LT+Y+R +LK  I  +Y + + +L   LF  E E  +R ++RQT + +++AL++ 
Sbjct  562  RDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSE  620

Query  637  VTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINI  696
             +  L++Q+R ++ +  +   ++V++V+ D+R  +R L++ E+  +PVLS+ E+T+  ++
Sbjct  621  SSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEV  678

Query  697  QPLGR  701
            + LGR
Sbjct  679  KVLGR  683

40) YPA_CD0028 in NC_008122


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1257),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 268/665 (41%), Positives = 465/665 (70%), Gaps = 41/665 (6%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+M+A+ +  PL FS+FP+VLL+TT+FRLALS++TTR+ILL+ DAG+IV +FG
Sbjct  50   NICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIF+I+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I V+EA+ RR+ + KESQ+FG+MDGAMKFV+GDAIA+LII+ +N++GG+TIGV Q G++A
Sbjct  170  ISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS---SDLGSDIGKQVVAQPK  283
            ++A+QLYS+LT+GDG+++Q+PALLI++TAG+I+TRV++ED+   +++G +I+ Q+ +QPK
Sbjct  230  GDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSG  343
            A +I++  +L F+ +PG PT+ F+ +A ++ CGG +L  ++++              G+ 
Sbjct  290  AWIIASAAMLGFAAMPGMPTMVFVTIA-IICCGGGLLQINRAK------------PKGNQ  336

Query  344  APAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAI-ALNDELVRVRRALY  402
              AA T +  +G +  R+     F  +  ++++ ++SQ  +LE I AL  E+ + R  L 
Sbjct  337  DQAAPTTPENNGQEDLRM-----FLPSRQFVLQFHPSQ--SLERIEALVSEIRQRRNRLV  389

Query  403  LDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEK  462
            +++G+ +P++ + ++  +  +E+ +++ EVPV R+ +    + +  S   +E  +  Y K
Sbjct  390  VNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQAIE-NDQQYSK  448

Query  463  GEHLLPDQEAFWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLL  522
            G     + + +WV+ +  E L++S+ + +S S ++  ++ + L+  + +FIG+QET+ +L
Sbjct  449  GSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAIL  507

Query  523  EQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRS------ILEAMVEWGQKE  576
              +E    EL +E+QR++PL R+        +  +++R MR+      I E+++E GQ E
Sbjct  508  GWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIAETLIEHGQHE  561

Query  577  KDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPA  636
            +DV+ LT+Y+R +LK  I  +Y + + +L   LF  E E  +R ++RQT + +++AL++ 
Sbjct  562  RDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSE  620

Query  637  VTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINI  696
             +  L++Q+R ++ +  +   ++V++V+ D+R  +R L++ E+  +PVLS+ E+T+  ++
Sbjct  621  SSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEV  678

Query  697  QPLGR  701
            + LGR
Sbjct  679  KVLGR  683

41) yscV in NC_005813


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1257),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 268/665 (41%), Positives = 465/665 (70%), Gaps = 41/665 (6%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+M+A+ +  PL FS+FP+VLL+TT+FRLALS++TTR+ILL+ DAG+IV +FG
Sbjct  50   NICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIF+I+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I V+EA+ RR+ + KESQ+FG+MDGAMKFV+GDAIA+LII+ +N++GG+TIGV Q G++A
Sbjct  170  ISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS---SDLGSDIGKQVVAQPK  283
            ++A+QLYS+LT+GDG+++Q+PALLI++TAG+I+TRV++ED+   +++G +I+ Q+ +QPK
Sbjct  230  GDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSG  343
            A +I++  +L F+ +PG PT+ F+ +A ++ CGG +L  ++++              G+ 
Sbjct  290  AWIIASAAMLGFAAMPGMPTMVFVTIA-IICCGGGLLQINRAK------------PKGNQ  336

Query  344  APAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAI-ALNDELVRVRRALY  402
              AA T +  +G +  R+     F  +  ++++ ++SQ  +LE I AL  E+ + R  L 
Sbjct  337  DQAAPTTPENNGQEDLRM-----FLPSRQFVLQFHPSQ--SLERIEALVSEIRQRRNRLV  389

Query  403  LDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEK  462
            +++G+ +P++ + ++  +  +E+ +++ EVPV R+ +    + +  S   +E  +  Y K
Sbjct  390  VNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQAIE-NDQQYSK  448

Query  463  GEHLLPDQEAFWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLL  522
            G     + + +WV+ +  E L++S+ + +S S ++  ++ + L+  + +FIG+QET+ +L
Sbjct  449  GSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAIL  507

Query  523  EQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRS------ILEAMVEWGQKE  576
              +E    EL +E+QR++PL R+        +  +++R MR+      I E+++E GQ E
Sbjct  508  GWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIAETLIEHGQHE  561

Query  577  KDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPA  636
            +DV+ LT+Y+R +LK  I  +Y + + +L   LF  E E  +R ++RQT + +++AL++ 
Sbjct  562  RDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSE  620

Query  637  VTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINI  696
             +  L++Q+R ++ +  +   ++V++V+ D+R  +R L++ E+  +PVLS+ E+T+  ++
Sbjct  621  SSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEV  678

Query  697  QPLGR  701
            + LGR
Sbjct  679  KVLGR  683

42) yscV in NC_003131


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1257),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 268/665 (41%), Positives = 465/665 (70%), Gaps = 41/665 (6%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+M+A+ +  PL FS+FP+VLL+TT+FRLALS++TTR+ILL+ DAG+IV +FG
Sbjct  50   NICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIF+I+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I V+EA+ RR+ + KESQ+FG+MDGAMKFV+GDAIA+LII+ +N++GG+TIGV Q G++A
Sbjct  170  ISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS---SDLGSDIGKQVVAQPK  283
            ++A+QLYS+LT+GDG+++Q+PALLI++TAG+I+TRV++ED+   +++G +I+ Q+ +QPK
Sbjct  230  GDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSG  343
            A +I++  +L F+ +PG PT+ F+ +A ++ CGG +L  ++++              G+ 
Sbjct  290  AWIIASAAMLGFAAMPGMPTMVFVTIA-IICCGGGLLQINRAK------------PKGNQ  336

Query  344  APAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAI-ALNDELVRVRRALY  402
              AA T +  +G +  R+     F  +  ++++ ++SQ  +LE I AL  E+ + R  L 
Sbjct  337  DQAAPTTPENNGQEDLRM-----FLPSRQFVLQFHPSQ--SLERIEALVSEIRQRRNRLV  389

Query  403  LDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEK  462
            +++G+ +P++ + ++  +  +E+ +++ EVPV R+ +    + +  S   +E  +  Y K
Sbjct  390  VNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQAIE-NDQQYSK  448

Query  463  GEHLLPDQEAFWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLL  522
            G     + + +WV+ +  E L++S+ + +S S ++  ++ + L+  + +FIG+QET+ +L
Sbjct  449  GSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAIL  507

Query  523  EQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRS------ILEAMVEWGQKE  576
              +E    EL +E+QR++PL R+        +  +++R MR+      I E+++E GQ E
Sbjct  508  GWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIAETLIEHGQHE  561

Query  577  KDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPA  636
            +DV+ LT+Y+R +LK  I  +Y + + +L   LF  E E  +R ++RQT + +++AL++ 
Sbjct  562  RDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSE  620

Query  637  VTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINI  696
             +  L++Q+R ++ +  +   ++V++V+ D+R  +R L++ E+  +PVLS+ E+T+  ++
Sbjct  621  SSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEV  678

Query  697  QPLGR  701
            + LGR
Sbjct  679  KVLGR  683

43) yscV in NC_017153


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1257),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 268/665 (41%), Positives = 465/665 (70%), Gaps = 41/665 (6%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+M+A+ +  PL FS+FP+VLL+TT+FRLALS++TTR+ILL+ DAG+IV +FG
Sbjct  50   NICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIF+I+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I V+EA+ RR+ + KESQ+FG+MDGAMKFV+GDAIA+LII+ +N++GG+TIGV Q G++A
Sbjct  170  ISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS---SDLGSDIGKQVVAQPK  283
            ++A+QLYS+LT+GDG+++Q+PALLI++TAG+I+TRV++ED+   +++G +I+ Q+ +QPK
Sbjct  230  GDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSG  343
            A +I++  +L F+ +PG PT+ F+ +A ++ CGG +L  ++++              G+ 
Sbjct  290  AWIIASAAMLGFAAMPGMPTMVFVTIA-IICCGGGLLQINRAK------------PKGNQ  336

Query  344  APAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAI-ALNDELVRVRRALY  402
              AA T +  +G +  R+     F  +  ++++ ++SQ  +LE I AL  E+ + R  L 
Sbjct  337  DQAAPTTPENNGQEDLRM-----FLPSRQFVLQFHPSQ--SLERIEALVSEIRQRRNRLV  389

Query  403  LDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEK  462
            +++G+ +P++ + ++  +  +E+ +++ EVPV R+ +    + +  S   +E  +  Y K
Sbjct  390  VNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQAIE-NDQQYSK  448

Query  463  GEHLLPDQEAFWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLL  522
            G     + + +WV+ +  E L++S+ + +S S ++  ++ + L+  + +FIG+QET+ +L
Sbjct  449  GSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAIL  507

Query  523  EQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRS------ILEAMVEWGQKE  576
              +E    EL +E+QR++PL R+        +  +++R MR+      I E+++E GQ E
Sbjct  508  GWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIAETLIEHGQHE  561

Query  577  KDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPA  636
            +DV+ LT+Y+R +LK  I  +Y + + +L   LF  E E  +R ++RQT + +++AL++ 
Sbjct  562  RDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSE  620

Query  637  VTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINI  696
             +  L++Q+R ++ +  +   ++V++V+ D+R  +R L++ E+  +PVLS+ E+T+  ++
Sbjct  621  SSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEV  678

Query  697  QPLGR  701
            + LGR
Sbjct  679  KVLGR  683

44) yscV in NC_017157


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1257),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 268/665 (41%), Positives = 465/665 (70%), Gaps = 41/665 (6%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+M+A+ +  PL FS+FP+VLL+TT+FRLALS++TTR+ILL+ DAG+IV +FG
Sbjct  50   NICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIF+I+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I V+EA+ RR+ + KESQ+FG+MDGAMKFV+GDAIA+LII+ +N++GG+TIGV Q G++A
Sbjct  170  ISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS---SDLGSDIGKQVVAQPK  283
            ++A+QLYS+LT+GDG+++Q+PALLI++TAG+I+TRV++ED+   +++G +I+ Q+ +QPK
Sbjct  230  GDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSG  343
            A +I++  +L F+ +PG PT+ F+ +A ++ CGG +L  ++++              G+ 
Sbjct  290  AWIIASAAMLGFAAMPGMPTMVFVTIA-IICCGGGLLQINRAK------------PKGNQ  336

Query  344  APAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAI-ALNDELVRVRRALY  402
              AA T +  +G +  R+     F  +  ++++ ++SQ  +LE I AL  E+ + R  L 
Sbjct  337  DQAAPTTPENNGQEDLRM-----FLPSRQFVLQFHPSQ--SLERIEALVSEIRQRRNRLV  389

Query  403  LDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEK  462
            +++G+ +P++ + ++  +  +E+ +++ EVPV R+ +    + +  S   +E  +  Y K
Sbjct  390  VNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQAIE-NDQQYSK  448

Query  463  GEHLLPDQEAFWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLL  522
            G     + + +WV+ +  E L++S+ + +S S ++  ++ + L+  + +FIG+QET+ +L
Sbjct  449  GSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAIL  507

Query  523  EQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRS------ILEAMVEWGQKE  576
              +E    EL +E+QR++PL R+        +  +++R MR+      I E+++E GQ E
Sbjct  508  GWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIAETLIEHGQHE  561

Query  577  KDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPA  636
            +DV+ LT+Y+R +LK  I  +Y + + +L   LF  E E  +R ++RQT + +++AL++ 
Sbjct  562  RDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSE  620

Query  637  VTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINI  696
             +  L++Q+R ++ +  +   ++V++V+ D+R  +R L++ E+  +PVLS+ E+T+  ++
Sbjct  621  SSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEV  678

Query  697  QPLGR  701
            + LGR
Sbjct  679  KVLGR  683

45) YPDSF_3983 in NC_009377


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1257),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 268/665 (41%), Positives = 465/665 (70%), Gaps = 41/665 (6%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+M+A+ +  PL FS+FP+VLL+TT+FRLALS++TTR+ILL+ DAG+IV +FG
Sbjct  50   NICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIF+I+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I V+EA+ RR+ + KESQ+FG+MDGAMKFV+GDAIA+LII+ +N++GG+TIGV Q G++A
Sbjct  170  ISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS---SDLGSDIGKQVVAQPK  283
            ++A+QLYS+LT+GDG+++Q+PALLI++TAG+I+TRV++ED+   +++G +I+ Q+ +QPK
Sbjct  230  GDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSG  343
            A +I++  +L F+ +PG PT+ F+ +A ++ CGG +L  ++++              G+ 
Sbjct  290  AWIIASAAMLGFAAMPGMPTMVFVTIA-IICCGGGLLQINRAK------------PKGNQ  336

Query  344  APAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAI-ALNDELVRVRRALY  402
              AA T +  +G +  R+     F  +  ++++ ++SQ  +LE I AL  E+ + R  L 
Sbjct  337  DQAAPTTPENNGQEDLRM-----FLPSRQFVLQFHPSQ--SLERIEALVSEIRQRRNRLV  389

Query  403  LDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEK  462
            +++G+ +P++ + ++  +  +E+ +++ EVPV R+ +    + +  S   +E  +  Y K
Sbjct  390  VNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQAIE-NDQQYSK  448

Query  463  GEHLLPDQEAFWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLL  522
            G     + + +WV+ +  E L++S+ + +S S ++  ++ + L+  + +FIG+QET+ +L
Sbjct  449  GSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAIL  507

Query  523  EQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRS------ILEAMVEWGQKE  576
              +E    EL +E+QR++PL R+        +  +++R MR+      I E+++E GQ E
Sbjct  508  GWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIAETLIEHGQHE  561

Query  577  KDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPA  636
            +DV+ LT+Y+R +LK  I  +Y + + +L   LF  E E  +R ++RQT + +++AL++ 
Sbjct  562  RDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSE  620

Query  637  VTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINI  696
             +  L++Q+R ++ +  +   ++V++V+ D+R  +R L++ E+  +PVLS+ E+T+  ++
Sbjct  621  SSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEV  678

Query  697  QPLGR  701
            + LGR
Sbjct  679  KVLGR  683

46) yscV in NC_014017


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1257),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 268/665 (41%), Positives = 465/665 (70%), Gaps = 41/665 (6%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+M+A+ +  PL FS+FP+VLL+TT+FRLALS++TTR+ILL+ DAG+IV +FG
Sbjct  50   NICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIF+I+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I V+EA+ RR+ + KESQ+FG+MDGAMKFV+GDAIA+LII+ +N++GG+TIGV Q G++A
Sbjct  170  ISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS---SDLGSDIGKQVVAQPK  283
            ++A+QLYS+LT+GDG+++Q+PALLI++TAG+I+TRV++ED+   +++G +I+ Q+ +QPK
Sbjct  230  GDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSG  343
            A +I++  +L F+ +PG PT+ F+ +A ++ CGG +L  ++++              G+ 
Sbjct  290  AWIIASAAMLGFAAMPGMPTMVFVTIA-IICCGGGLLQINRAK------------PKGNQ  336

Query  344  APAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAI-ALNDELVRVRRALY  402
              AA T +  +G +  R+     F  +  ++++ ++SQ  +LE I AL  E+ + R  L 
Sbjct  337  DQAAPTTPENNGQEDLRM-----FLPSRQFVLQFHPSQ--SLERIEALVSEIRQRRNRLV  389

Query  403  LDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEK  462
            +++G+ +P++ + ++  +  +E+ +++ EVPV R+ +    + +  S   +E  +  Y K
Sbjct  390  VNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQAIE-NDQQYSK  448

Query  463  GEHLLPDQEAFWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLL  522
            G     + + +WV+ +  E L++S+ + +S S ++  ++ + L+  + +FIG+QET+ +L
Sbjct  449  GSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAIL  507

Query  523  EQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRS------ILEAMVEWGQKE  576
              +E    EL +E+QR++PL R+        +  +++R MR+      I E+++E GQ E
Sbjct  508  GWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIAETLIEHGQHE  561

Query  577  KDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPA  636
            +DV+ LT+Y+R +LK  I  +Y + + +L   LF  E E  +R ++RQT + +++AL++ 
Sbjct  562  RDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSE  620

Query  637  VTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINI  696
             +  L++Q+R ++ +  +   ++V++V+ D+R  +R L++ E+  +PVLS+ E+T+  ++
Sbjct  621  SSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEV  678

Query  697  QPLGR  701
            + LGR
Sbjct  679  KVLGR  683

47) pYV0060 in NC_006153


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1257),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 268/665 (41%), Positives = 465/665 (70%), Gaps = 41/665 (6%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+M+A+ +  PL FS+FP+VLL+TT+FRLALS++TTR+ILL+ DAG+IV +FG
Sbjct  50   NICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIF+I+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I V+EA+ RR+ + KESQ+FG+MDGAMKFV+GDAIA+LII+ +N++GG+TIGV Q G++A
Sbjct  170  ISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS---SDLGSDIGKQVVAQPK  283
            ++A+QLYS+LT+GDG+++Q+PALLI++TAG+I+TRV++ED+   +++G +I+ Q+ +QPK
Sbjct  230  GDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSG  343
            A +I++  +L F+ +PG PT+ F+ +A ++ CGG +L  ++++              G+ 
Sbjct  290  AWIIASAAMLGFAAMPGMPTMVFVTIA-IICCGGGLLQINRAK------------PKGNQ  336

Query  344  APAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAI-ALNDELVRVRRALY  402
              AA T +  +G +  R+     F  +  ++++ ++SQ  +LE I AL  E+ + R  L 
Sbjct  337  DQAAPTTPENNGQEDLRM-----FLPSRQFVLQFHPSQ--SLERIEALVSEIRQRRNRLV  389

Query  403  LDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEK  462
            +++G+ +P++ + ++  +  +E+ +++ EVPV R+ +    + +  S   +E  +  Y K
Sbjct  390  VNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQAIE-NDQQYSK  448

Query  463  GEHLLPDQEAFWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLL  522
            G     + + +WV+ +  E L++S+ + +S S ++  ++ + L+  + +FIG+QET+ +L
Sbjct  449  GSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAIL  507

Query  523  EQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRS------ILEAMVEWGQKE  576
              +E    EL +E+QR++PL R+        +  +++R MR+      I E+++E GQ E
Sbjct  508  GWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIAETLIEHGQHE  561

Query  577  KDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPA  636
            +DV+ LT+Y+R +LK  I  +Y + + +L   LF  E E  +R ++RQT + +++AL++ 
Sbjct  562  RDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSE  620

Query  637  VTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINI  696
             +  L++Q+R ++ +  +   ++V++V+ D+R  +R L++ E+  +PVLS+ E+T+  ++
Sbjct  621  SSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEV  678

Query  697  QPLGR  701
            + LGR
Sbjct  679  KVLGR  683

48) YPTS_4279 in NC_010635


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  335 bits (1257),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 268/665 (41%), Positives = 465/665 (70%), Gaps = 41/665 (6%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+M+A+ +  PL FS+FP+VLL+TT+FRLALS++TTR+ILL+ DAG+IV +FG
Sbjct  50   NICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIF+I+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I V+EA+ RR+ + KESQ+FG+MDGAMKFV+GDAIA+LII+ +N++GG+TIGV Q G++A
Sbjct  170  ISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDS---SDLGSDIGKQVVAQPK  283
            ++A+QLYS+LT+GDG+++Q+PALLI++TAG+I+TRV++ED+   +++G +I+ Q+ +QPK
Sbjct  230  GDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSG  343
            A +I++  +L F+ +PG PT+ F+ +A ++ CGG +L  ++++              G+ 
Sbjct  290  AWIIASAAMLGFAAMPGMPTMVFVTIA-IICCGGGLLQINRAK------------PKGNQ  336

Query  344  APAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAI-ALNDELVRVRRALY  402
              AA T +  +G +  R+     F  +  ++++ ++SQ  +LE I AL  E+ + R  L 
Sbjct  337  DQAAPTTPENNGQEDLRM-----FLPSRQFVLQFHPSQ--SLERIEALVSEIRQRRNRLV  389

Query  403  LDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEK  462
            +++G+ +P++ + ++  +  +E+ +++ EVPV R+ +    + +  S   +E  +  Y K
Sbjct  390  VNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQAIE-NDQQYSK  448

Query  463  GEHLLPDQEAFWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLL  522
            G     + + +WV+ +  E L++S+ + +S S ++  ++ + L+  + +FIG+QET+ +L
Sbjct  449  GSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQFIGLQETKAIL  507

Query  523  EQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRS------ILEAMVEWGQKE  576
              +E    EL +E+QR++PL R+        +  +++R MR+      I E+++E GQ E
Sbjct  508  GWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIAETLIEHGQHE  561

Query  577  KDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPA  636
            +DV+ LT+Y+R +LK  I  +Y + + +L   LF  E E  +R ++RQT + +++AL++ 
Sbjct  562  RDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQTETFFALNSE  620

Query  637  VTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINI  696
             +  L++Q+R ++ +  +   ++V++V+ D+R  +R L++ E+  +PVLS+ E+T+  ++
Sbjct  621  SSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEV  678

Query  697  QPLGR  701
            + LGR
Sbjct  679  KVLGR  683

49) hrcV in NC_014323


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  333 bits (1251),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 295/702 (43%), Positives = 497/702 (71%), Gaps = 31/702 (4%)

Query  6    IVMLLNKFAIQLGKRAELLAAALVIGIVFMLVLPMPIWLLDILIAMSLCASGLIVVVAMY  65
            I+ LLN++A+   +R+E+++A +V++IVFM++ P+P WL+DILIA+++C S L++++AM 
Sbjct  4    IIDLLNRLALAAMRRSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQ  63

Query  66   MAGPTAFSTFPAVLLLTTLFRLAISVSTTRLILLEADAGHIVEtfgnfvvggnlvvglvi  125
            ++ P AFSTFP+VLL+TT+FRLA+S++TTRLILL+ DAGHIVE+FG+FVVGGNL VG+VI
Sbjct  64   LPRPLAFSTFPSVLLITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVI  123

Query  126  fliltvvQFIVITKGSERVSEVSARFSLDAMPGKQMSIDSDLRAGILTPEEAKAKRAHLG  185
            F+ILTVV+F+VITKGSERV+EV+ARF+LDAMPGKQMSIDSDLRA +++ +EAK +R++LG
Sbjct  124  FMILTVVNFMVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELG  183

Query  186  QESQLHGAMDGAMKFVKGDAIAGICIVAINLiggisigiiQRGMDAGQAMQVYSILSIGD  245
            +ESQL GAMDGAMKFV+GDAIA++ IVAIN+IGGI+IG+IQ+GM AG+A+Q+YS+L+IGD
Sbjct  184  KESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGD  243

Query  246  ALIAQIPALLISLGAGIITTRVSDDNEEGETNIGRDIVGELFGEPKALLTAAGIMLLFGL  305
            +LIAQIPALLIS+ AG+I TRV++++  G +NIGR+I  ++ ++PKA + A++ ML F+ 
Sbjct  244  GLIAQIPALLISVTAGMIITRVPNEDAAGPANIGREIAEQITSQPKAWIIASAAMLGFAA  303

Query  306  IPGMPTVIFvalavglcvagvvgmlKPLADAEMARESEELERKNAGIVDLTSFAATTPFI  365
            +PGMPT++FV++A+  C +G++ + ++ + ++  + +      N G  DL  F ++  F+
Sbjct  304  MPGMPTMVFVTIAIICCGGGLLQINRAKPKGNQDQAAPT-TPENNGQEDLRMFLPSRQFV  362

Query  366  LRMNESMRGKAEAEVIRTAVRIMRNAMLERRGIPDLKPIDFEFSSMVPEGRVFFMMSEVP  425
            L+ + S ++    E + + +R  RN ++   G+  L ++ +E+ + +  +   F + EVP
Sbjct  363  LQFHPS-QSLERIEALVSEIRQRRNRLVVNFGLT-LPSFIIEYQAHLEPDEFRFTVYEVP  420

Query  426  LVDA---EIMLGWSATRESLERVQELGFQGFERNIPGSR-RRRVWVKTEDPEKLAEAGLL  481
            ++ A   E +++  ++ +++E  Q+     + +  +  +  +++WV T D+E L ++   
Sbjct  421  VLRATFSETLVAIDGSSQAIENDQQ-----YSKGSSERQESQWIWVPT-DAELLNNSNTQ  474

Query  482  AESWEKVFASDIEVEMLRNC-QMFVGVNEVIRFTRWAERRYPELGKEVVKTVTLPRLTEV  540
            + S   ++   +E   L+ C   F+G++E   +  W E   PEL++E+ + + L+R+   
Sbjct  475  PISPSTLIIERMERA-LQICGPQFIGLQETKAILGWLETEQPELAQELQRVMPLSRVFSG  533

Query  541  VQRLTREGVSLRNA---RLLLETTLDWAPKERDPDVIADYVRLAFK----RQLCFEASRE  593
               +   G  +R A    ++ ET ++ +  ERD   ++DYVR+A+K     Q C   S+E
Sbjct  534  AAAV---GFRMRAAARYPVIAETLIEHGQHERDVLALTDYVRIALKSLIYNQYC---SQE  587

Query  594  GLIEVILLSPELEDQLRNAMRQTSQGSYLDIDSELEQMILDRLNELSTNVSTPIVPPVLV  653
            GL+ V L++PE E+ LR+++RQT   +++ ++SE   M++++L     + S+    +V++
Sbjct  588  GLL-VWLFTPESEGILRDSLRQTQTETFFALNSESSLMLVQQLRMAFPQRSSE--RAVML  644

Query  654  TAADIRRSVRKLIeeeffpvpvfAFSELTQHAKVKPVGMIEV  695
             A D+R ++R L+++EF  VPV++F+E+T+ + VK +G +++
Sbjct  645  VAQDLRAPLRTLLQDEFHHVPVLSFAEITNASEVKVLGRFDL  686

50) bcrD in NC_002928


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  322 bits (1206),  Expect = 5e-89, Method: Compositional matrix adjust.
 Identities = 281/661 (43%), Positives = 463/661 (71%), Gaps = 35/661 (5%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI P+PT LVD+LI+ N+ +S +L+M+AM LP PLAFS+FPSVLL+TT+FRL++SIAT
Sbjct  32   FMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVLLITTMFRLALSIAT  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VG+V+F+ILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I ++EA+RRR  + KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGD--  271
            +N++GG+ +GV+Q+G++AG+AVQ Y++LTIGDGLIAQIPAL+I++ AG+I+TRV   D  
Sbjct  212  INMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVTAGMIITRVPNEDAA  271

Query  272  GPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQ  331
            GP+N+G +I+ Q+ +QP+A +IA+A   G++ +PGMPT+VF ++A +    G  LL+ ++
Sbjct  272  GPANIGREIAEQITSQPKAWIIASAAMLGFAAMPGMPTMVFVTIAIICCGGG--LLQINR  329

Query  332  RPPEGAGPALAGMAADGQPRTRAPADGQAE---FAPTVPLIID-VAARLQPRFEPATLTD  387
              P G          D  + T +  +GQ +   F P+  ++++  +++   R+E  +L  
Sbjct  330  AKPKG--------NQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIE--ALVS  379

Query  388  DLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQN  447
            ++ Q R  L  ++G+ +P++ + +   L ++ + + + E+PV ++ + +  V + ++ Q 
Sbjct  380  EIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATFSETLVAIDGSSQA  439

Query  448  LQALRIAYETGAAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADF  507
            ++  +  Y  G++   ++  IWV++  +  L ++    ++ S ++  ++   L+  +++F
Sbjct  440  IENDQ-QYSKGSSERQESQWIWVPTD-AELLNNSNTQPISPSTLIIERMERALQICGPQF  497

Query  508  IGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRA------VL  561
            IG+QET+ +L+ +E   P+L +E  RVMP+ ++        +  V++R +RA      + 
Sbjct  498  IGLQETKAILGWLETEQPELAQELQRVMPLSRVFS-----GAAAVGFR-MRAAARYPVIA  551

Query  562  EALVEWGQKEKDTVLLTEYVRIALKRYISYKYTSGHNILPAYLLAPKVEETVRAAIRQTA  621
            E+L+E GQ E+D + LT+YVRIALK  I  +Y S + +L   L++P  E  +R ++RQT 
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLL-VWLFTPESEGILRDSLRQTQ  610

Query  622  AGSYLALDPDTTRRLVEYIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLS  681
            + +++AL+++++  LV+ +R    +   ++ R+V+L + D+R   R +++ ++  +PVLS
Sbjct  611  TETFFALNSESSLMLVQQLRMAFPQ--RSSERAVMLVAQDLRAPLRTLLQDEFHHVPVLS  668

Query  682  Y  682
            +
Sbjct  669  F  669

51) A1122_03810 in NC_017168


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  304 bits (1141),  Expect = 7e-84, Method: Compositional matrix adjust.
 Identities = 276/682 (41%), Positives = 450/682 (66%), Gaps = 31/682 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A ++L  VFMMI P+PT +VD+LIA+N+ +S +L+M+++ L  PL FS FPS+L
Sbjct  18   RSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            LITT++RLAL+I+TTRL+LL++DAG+IVEAFGQFVVGGNLAVGM+IF I+TVV+F+VITK
Sbjct  78   LITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EAKR R  + KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ IN+IGGITIGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVP---GSNKQSLANELAVQVGRQPDALW-LAAAILTVFALLPGFPFLIFITLa  311
            AG+I+TRVP   ++   +++ E+A Q+  QP A W +A+A +  FA +PG P ++F+T+A
Sbjct  258  AGMIITRVPNEDAAGPANIGREIAEQITSQPKA-WIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  312  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRM--TPGAVPLMLHCASNLHH-PH  367
                + ++L + R + + +QD  A   +E+ G  + RM   +    L +H + +L++   
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIEA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I  ++ L  + +   VY+  VL   + +++L+    
Sbjct  377  LVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDG  435

Query  428  CSSLVTNNQVLGAKMGSFD-----WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYT  482
             S  + N+Q  +   +  +     W+ +   +   +   P +     II  + R ++   
Sbjct  436  SSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP-ISPSTLIIERMERALQICG  494

Query  483  AEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRD---LRTIF  539
            ++FIG+QET+ +++ +E    EL +ELQR +P+++V   +       + +R       I 
Sbjct  495  PQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV---FSGAAAVGFRMRAAARYPVIA  551

Query  540  GALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKT---WISVLRLGDGVEHLIRDSIR  596
             +L+  +  E+D++ LT+YVRIAL+  +  ++  +     W+    +    E ++RDS+R
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWL----FTPESEGILRDSLR  607

Query  597  QTSSGTYSALEERQSLLILNKIKNAFAE--NQDAVLLTTLDVRRFVRKIIERDLFVLPVL  654
            QT + T+ AL+   SL+++++++ AF++  ++ AV+L + D+R  +R +++ ++  +PVL
Sbjct  608  QTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVL  667

Query  655  SWQELGDEMNLKVAGTIELIGD  676
            S  E+ +  ++KV G ++L  +
Sbjct  668  SFAEITNASEVKVLGRFDLENE  689

52) YPC_0742 in NC_017265


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  304 bits (1141),  Expect = 7e-84, Method: Compositional matrix adjust.
 Identities = 276/682 (41%), Positives = 450/682 (66%), Gaps = 31/682 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A ++L  VFMMI P+PT +VD+LIA+N+ +S +L+M+++ L  PL FS FPS+L
Sbjct  18   RSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            LITT++RLAL+I+TTRL+LL++DAG+IVEAFGQFVVGGNLAVGM+IF I+TVV+F+VITK
Sbjct  78   LITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EAKR R  + KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ IN+IGGITIGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVP---GSNKQSLANELAVQVGRQPDALW-LAAAILTVFALLPGFPFLIFITLa  311
            AG+I+TRVP   ++   +++ E+A Q+  QP A W +A+A +  FA +PG P ++F+T+A
Sbjct  258  AGMIITRVPNEDAAGPANIGREIAEQITSQPKA-WIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  312  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRM--TPGAVPLMLHCASNLHH-PH  367
                + ++L + R + + +QD  A   +E+ G  + RM   +    L +H + +L++   
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIEA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I  ++ L  + +   VY+  VL   + +++L+    
Sbjct  377  LVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDG  435

Query  428  CSSLVTNNQVLGAKMGSFD-----WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYT  482
             S  + N+Q  +   +  +     W+ +   +   +   P +     II  + R ++   
Sbjct  436  SSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP-ISPSTLIIERMERALQICG  494

Query  483  AEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRD---LRTIF  539
            ++FIG+QET+ +++ +E    EL +ELQR +P+++V   +       + +R       I 
Sbjct  495  PQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV---FSGAAAVGFRMRAAARYPVIA  551

Query  540  GALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKT---WISVLRLGDGVEHLIRDSIR  596
             +L+  +  E+D++ LT+YVRIAL+  +  ++  +     W+    +    E ++RDS+R
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWL----FTPESEGILRDSLR  607

Query  597  QTSSGTYSALEERQSLLILNKIKNAFAE--NQDAVLLTTLDVRRFVRKIIERDLFVLPVL  654
            QT + T+ AL+   SL+++++++ AF++  ++ AV+L + D+R  +R +++ ++  +PVL
Sbjct  608  QTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVL  667

Query  655  SWQELGDEMNLKVAGTIELIGD  676
            S  E+ +  ++KV G ++L  +
Sbjct  668  SFAEITNASEVKVLGRFDLENE  689

53) YPO0266 in NC_003143


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  304 bits (1141),  Expect = 7e-84, Method: Compositional matrix adjust.
 Identities = 276/682 (41%), Positives = 450/682 (66%), Gaps = 31/682 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A ++L  VFMMI P+PT +VD+LIA+N+ +S +L+M+++ L  PL FS FPS+L
Sbjct  18   RSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            LITT++RLAL+I+TTRL+LL++DAG+IVEAFGQFVVGGNLAVGM+IF I+TVV+F+VITK
Sbjct  78   LITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EAKR R  + KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ IN+IGGITIGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVP---GSNKQSLANELAVQVGRQPDALW-LAAAILTVFALLPGFPFLIFITLa  311
            AG+I+TRVP   ++   +++ E+A Q+  QP A W +A+A +  FA +PG P ++F+T+A
Sbjct  258  AGMIITRVPNEDAAGPANIGREIAEQITSQPKA-WIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  312  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRM--TPGAVPLMLHCASNLHH-PH  367
                + ++L + R + + +QD  A   +E+ G  + RM   +    L +H + +L++   
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIEA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I  ++ L  + +   VY+  VL   + +++L+    
Sbjct  377  LVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDG  435

Query  428  CSSLVTNNQVLGAKMGSFD-----WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYT  482
             S  + N+Q  +   +  +     W+ +   +   +   P +     II  + R ++   
Sbjct  436  SSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP-ISPSTLIIERMERALQICG  494

Query  483  AEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRD---LRTIF  539
            ++FIG+QET+ +++ +E    EL +ELQR +P+++V   +       + +R       I 
Sbjct  495  PQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV---FSGAAAVGFRMRAAARYPVIA  551

Query  540  GALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKT---WISVLRLGDGVEHLIRDSIR  596
             +L+  +  E+D++ LT+YVRIAL+  +  ++  +     W+    +    E ++RDS+R
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWL----FTPESEGILRDSLR  607

Query  597  QTSSGTYSALEERQSLLILNKIKNAFAE--NQDAVLLTTLDVRRFVRKIIERDLFVLPVL  654
            QT + T+ AL+   SL+++++++ AF++  ++ AV+L + D+R  +R +++ ++  +PVL
Sbjct  608  QTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVL  667

Query  655  SWQELGDEMNLKVAGTIELIGD  676
            S  E+ +  ++KV G ++L  +
Sbjct  668  SFAEITNASEVKVLGRFDLENE  689

54) YPD4_0230 in NC_017154


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  304 bits (1141),  Expect = 7e-84, Method: Compositional matrix adjust.
 Identities = 276/682 (41%), Positives = 450/682 (66%), Gaps = 31/682 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A ++L  VFMMI P+PT +VD+LIA+N+ +S +L+M+++ L  PL FS FPS+L
Sbjct  18   RSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            LITT++RLAL+I+TTRL+LL++DAG+IVEAFGQFVVGGNLAVGM+IF I+TVV+F+VITK
Sbjct  78   LITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EAKR R  + KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ IN+IGGITIGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVP---GSNKQSLANELAVQVGRQPDALW-LAAAILTVFALLPGFPFLIFITLa  311
            AG+I+TRVP   ++   +++ E+A Q+  QP A W +A+A +  FA +PG P ++F+T+A
Sbjct  258  AGMIITRVPNEDAAGPANIGREIAEQITSQPKA-WIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  312  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRM--TPGAVPLMLHCASNLHH-PH  367
                + ++L + R + + +QD  A   +E+ G  + RM   +    L +H + +L++   
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIEA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I  ++ L  + +   VY+  VL   + +++L+    
Sbjct  377  LVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDG  435

Query  428  CSSLVTNNQVLGAKMGSFD-----WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYT  482
             S  + N+Q  +   +  +     W+ +   +   +   P +     II  + R ++   
Sbjct  436  SSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP-ISPSTLIIERMERALQICG  494

Query  483  AEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRD---LRTIF  539
            ++FIG+QET+ +++ +E    EL +ELQR +P+++V   +       + +R       I 
Sbjct  495  PQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV---FSGAAAVGFRMRAAARYPVIA  551

Query  540  GALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKT---WISVLRLGDGVEHLIRDSIR  596
             +L+  +  E+D++ LT+YVRIAL+  +  ++  +     W+    +    E ++RDS+R
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWL----FTPESEGILRDSLR  607

Query  597  QTSSGTYSALEERQSLLILNKIKNAFAE--NQDAVLLTTLDVRRFVRKIIERDLFVLPVL  654
            QT + T+ AL+   SL+++++++ AF++  ++ AV+L + D+R  +R +++ ++  +PVL
Sbjct  608  QTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVL  667

Query  655  SWQELGDEMNLKVAGTIELIGD  676
            S  E+ +  ++KV G ++L  +
Sbjct  668  SFAEITNASEVKVLGRFDLENE  689

55) YPD8_0235 in NC_017160


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  304 bits (1141),  Expect = 7e-84, Method: Compositional matrix adjust.
 Identities = 276/682 (41%), Positives = 450/682 (66%), Gaps = 31/682 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A ++L  VFMMI P+PT +VD+LIA+N+ +S +L+M+++ L  PL FS FPS+L
Sbjct  18   RSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            LITT++RLAL+I+TTRL+LL++DAG+IVEAFGQFVVGGNLAVGM+IF I+TVV+F+VITK
Sbjct  78   LITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EAKR R  + KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ IN+IGGITIGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVP---GSNKQSLANELAVQVGRQPDALW-LAAAILTVFALLPGFPFLIFITLa  311
            AG+I+TRVP   ++   +++ E+A Q+  QP A W +A+A +  FA +PG P ++F+T+A
Sbjct  258  AGMIITRVPNEDAAGPANIGREIAEQITSQPKA-WIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  312  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRM--TPGAVPLMLHCASNLHH-PH  367
                + ++L + R + + +QD  A   +E+ G  + RM   +    L +H + +L++   
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIEA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I  ++ L  + +   VY+  VL   + +++L+    
Sbjct  377  LVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDG  435

Query  428  CSSLVTNNQVLGAKMGSFD-----WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYT  482
             S  + N+Q  +   +  +     W+ +   +   +   P +     II  + R ++   
Sbjct  436  SSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP-ISPSTLIIERMERALQICG  494

Query  483  AEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRD---LRTIF  539
            ++FIG+QET+ +++ +E    EL +ELQR +P+++V   +       + +R       I 
Sbjct  495  PQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV---FSGAAAVGFRMRAAARYPVIA  551

Query  540  GALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKT---WISVLRLGDGVEHLIRDSIR  596
             +L+  +  E+D++ LT+YVRIAL+  +  ++  +     W+    +    E ++RDS+R
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWL----FTPESEGILRDSLR  607

Query  597  QTSSGTYSALEERQSLLILNKIKNAFAE--NQDAVLLTTLDVRRFVRKIIERDLFVLPVL  654
            QT + T+ AL+   SL+++++++ AF++  ++ AV+L + D+R  +R +++ ++  +PVL
Sbjct  608  QTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVL  667

Query  655  SWQELGDEMNLKVAGTIELIGD  676
            S  E+ +  ++KV G ++L  +
Sbjct  668  SFAEITNASEVKVLGRFDLENE  689

56) YPZ3_0228 in NC_014029


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  304 bits (1141),  Expect = 7e-84, Method: Compositional matrix adjust.
 Identities = 276/682 (41%), Positives = 450/682 (66%), Gaps = 31/682 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A ++L  VFMMI P+PT +VD+LIA+N+ +S +L+M+++ L  PL FS FPS+L
Sbjct  18   RSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            LITT++RLAL+I+TTRL+LL++DAG+IVEAFGQFVVGGNLAVGM+IF I+TVV+F+VITK
Sbjct  78   LITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EAKR R  + KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ IN+IGGITIGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVP---GSNKQSLANELAVQVGRQPDALW-LAAAILTVFALLPGFPFLIFITLa  311
            AG+I+TRVP   ++   +++ E+A Q+  QP A W +A+A +  FA +PG P ++F+T+A
Sbjct  258  AGMIITRVPNEDAAGPANIGREIAEQITSQPKA-WIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  312  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRM--TPGAVPLMLHCASNLHH-PH  367
                + ++L + R + + +QD  A   +E+ G  + RM   +    L +H + +L++   
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIEA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I  ++ L  + +   VY+  VL   + +++L+    
Sbjct  377  LVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDG  435

Query  428  CSSLVTNNQVLGAKMGSFD-----WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYT  482
             S  + N+Q  +   +  +     W+ +   +   +   P +     II  + R ++   
Sbjct  436  SSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP-ISPSTLIIERMERALQICG  494

Query  483  AEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRD---LRTIF  539
            ++FIG+QET+ +++ +E    EL +ELQR +P+++V   +       + +R       I 
Sbjct  495  PQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV---FSGAAAVGFRMRAAARYPVIA  551

Query  540  GALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKT---WISVLRLGDGVEHLIRDSIR  596
             +L+  +  E+D++ LT+YVRIAL+  +  ++  +     W+    +    E ++RDS+R
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWL----FTPESEGILRDSLR  607

Query  597  QTSSGTYSALEERQSLLILNKIKNAFAE--NQDAVLLTTLDVRRFVRKIIERDLFVLPVL  654
            QT + T+ AL+   SL+++++++ AF++  ++ AV+L + D+R  +R +++ ++  +PVL
Sbjct  608  QTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVL  667

Query  655  SWQELGDEMNLKVAGTIELIGD  676
            S  E+ +  ++KV G ++L  +
Sbjct  668  SFAEITNASEVKVLGRFDLENE  689

57) YPA_4017 in NC_008150


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  304 bits (1140),  Expect = 8e-84, Method: Compositional matrix adjust.
 Identities = 276/682 (41%), Positives = 450/682 (66%), Gaps = 31/682 (4%)

Query  5    RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  64
            R ++  A ++L  VFMMI P+PT +VD+LIA+N+ +S +L+M+++ L  PL FS FPS+L
Sbjct  18   RSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVL  77

Query  65   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  124
            LITT++RLAL+I+TTRL+LL++DAG+IVEAFGQFVVGGNLAVGM+IF I+TVV+F+VITK
Sbjct  78   LITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITK  137

Query  125  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  184
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EAKR R  + KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMK  197

Query  185  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  244
            FV+GDAIA++I++ IN+IGGITIGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVT  257

Query  245  AGIIVTRVP---GSNKQSLANELAVQVGRQPDALW-LAAAILTVFALLPGFPFLIFITLa  300
            AG+I+TRVP   ++   +++ E+A Q+  QP A W +A+A +  FA +PG P ++F+T+A
Sbjct  258  AGMIITRVPNEDAAGPANIGREIAEQITSQPKA-WIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  301  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRM--TPGAVPLMLHCASNLHH-PH  356
                + ++L + R + + +QD  A   +E+ G  + RM   +    L +H + +L++   
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIEA  376

Query  357  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  416
            L  +I   R R   ++G+ LP   I  ++ L  + +   VY+  VL   + +++L+    
Sbjct  377  LVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDG  435

Query  417  CSSLVTNNQVLGAKMGSFD-----WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYT  471
             S  + N+Q  +   +  +     W+ +   +   +   P +     II  + R ++   
Sbjct  436  SSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP-ISPSTLIIERMERALQICG  494

Query  472  AEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRD---LRTIF  528
            ++FIG+QET+ +++ +E    EL +ELQR +P+++V   +       + +R       I 
Sbjct  495  PQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV---FSGAAAVGFRMRAAARYPVIA  551

Query  529  GALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKT---WISVLRLGDGVEHLIRDSIR  585
             +L+  +  E+D++ LT+YVRIAL+  +  ++  +     W+    +    E ++RDS+R
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWL----FTPESEGILRDSLR  607

Query  586  QTSSGTYSALEERQSLLILNKIKNAFAE--NQDAVLLTTLDVRRFVRKIIERDLFVLPVL  643
            QT + T+ AL+   SL+++++++ AF++  ++ AV+L + D+R  +R +++ ++  +PVL
Sbjct  608  QTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVL  667

Query  644  SWQELGDEMNLKVAGTIELIGD  665
            S  E+ +  ++KV G ++L  +
Sbjct  668  SFAEITNASEVKVLGRFDLENE  689

58) flhA1 in NC_005810


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  304 bits (1140),  Expect = 8e-84, Method: Compositional matrix adjust.
 Identities = 276/682 (41%), Positives = 450/682 (66%), Gaps = 31/682 (4%)

Query  18   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  77
            R ++  A ++L  VFMMI P+PT +VD+LIA+N+ +S +L+M+++ L  PL FS FPS+L
Sbjct  18   RSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVL  77

Query  78   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  137
            LITT++RLAL+I+TTRL+LL++DAG+IVEAFGQFVVGGNLAVGM+IF I+TVV+F+VITK
Sbjct  78   LITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITK  137

Query  138  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  197
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EAKR R  + KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMK  197

Query  198  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  257
            FV+GDAIA++I++ IN+IGGITIGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVT  257

Query  258  AGIIVTRVP---GSNKQSLANELAVQVGRQPDALW-LAAAILTVFALLPGFPFLIFITLa  313
            AG+I+TRVP   ++   +++ E+A Q+  QP A W +A+A +  FA +PG P ++F+T+A
Sbjct  258  AGMIITRVPNEDAAGPANIGREIAEQITSQPKA-WIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  314  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRM--TPGAVPLMLHCASNLHH-PH  369
                + ++L + R + + +QD  A   +E+ G  + RM   +    L +H + +L++   
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIEA  376

Query  370  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  429
            L  +I   R R   ++G+ LP   I  ++ L  + +   VY+  VL   + +++L+    
Sbjct  377  LVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDG  435

Query  430  CSSLVTNNQVLGAKMGSFD-----WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYT  484
             S  + N+Q  +   +  +     W+ +   +   +   P +     II  + R ++   
Sbjct  436  SSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP-ISPSTLIIERMERALQICG  494

Query  485  AEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRD---LRTIF  541
            ++FIG+QET+ +++ +E    EL +ELQR +P+++V   +       + +R       I 
Sbjct  495  PQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV---FSGAAAVGFRMRAAARYPVIA  551

Query  542  GALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKT---WISVLRLGDGVEHLIRDSIR  598
             +L+  +  E+D++ LT+YVRIAL+  +  ++  +     W+    +    E ++RDS+R
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWL----FTPESEGILRDSLR  607

Query  599  QTSSGTYSALEERQSLLILNKIKNAFAE--NQDAVLLTTLDVRRFVRKIIERDLFVLPVL  656
            QT + T+ AL+   SL+++++++ AF++  ++ AV+L + D+R  +R +++ ++  +PVL
Sbjct  608  QTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVL  667

Query  657  SWQELGDEMNLKVAGTIELIGD  678
            S  E+ +  ++KV G ++L  +
Sbjct  668  SFAEITNASEVKVLGRFDLENE  689

59) y0525 in NC_004088


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  304 bits (1140),  Expect = 8e-84, Method: Compositional matrix adjust.
 Identities = 276/682 (41%), Positives = 450/682 (66%), Gaps = 31/682 (4%)

Query  18   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  77
            R ++  A ++L  VFMMI P+PT +VD+LIA+N+ +S +L+M+++ L  PL FS FPS+L
Sbjct  18   RSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVL  77

Query  78   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  137
            LITT++RLAL+I+TTRL+LL++DAG+IVEAFGQFVVGGNLAVGM+IF I+TVV+F+VITK
Sbjct  78   LITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITK  137

Query  138  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  197
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EAKR R  + KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMK  197

Query  198  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  257
            FV+GDAIA++I++ IN+IGGITIGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVT  257

Query  258  AGIIVTRVP---GSNKQSLANELAVQVGRQPDALW-LAAAILTVFALLPGFPFLIFITLa  313
            AG+I+TRVP   ++   +++ E+A Q+  QP A W +A+A +  FA +PG P ++F+T+A
Sbjct  258  AGMIITRVPNEDAAGPANIGREIAEQITSQPKA-WIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  314  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRM--TPGAVPLMLHCASNLHH-PH  369
                + ++L + R + + +QD  A   +E+ G  + RM   +    L +H + +L++   
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIEA  376

Query  370  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  429
            L  +I   R R   ++G+ LP   I  ++ L  + +   VY+  VL   + +++L+    
Sbjct  377  LVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDG  435

Query  430  CSSLVTNNQVLGAKMGSFD-----WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYT  484
             S  + N+Q  +   +  +     W+ +   +   +   P +     II  + R ++   
Sbjct  436  SSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP-ISPSTLIIERMERALQICG  494

Query  485  AEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRD---LRTIF  541
            ++FIG+QET+ +++ +E    EL +ELQR +P+++V   +       + +R       I 
Sbjct  495  PQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV---FSGAAAVGFRMRAAARYPVIA  551

Query  542  GALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKT---WISVLRLGDGVEHLIRDSIR  598
             +L+  +  E+D++ LT+YVRIAL+  +  ++  +     W+    +    E ++RDS+R
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWL----FTPESEGILRDSLR  607

Query  599  QTSSGTYSALEERQSLLILNKIKNAFAE--NQDAVLLTTLDVRRFVRKIIERDLFVLPVL  656
            QT + T+ AL+   SL+++++++ AF++  ++ AV+L + D+R  +R +++ ++  +PVL
Sbjct  608  QTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVL  667

Query  657  SWQELGDEMNLKVAGTIELIGD  678
            S  E+ +  ++KV G ++L  +
Sbjct  668  SFAEITNASEVKVLGRFDLENE  689

60) YPDSF_3705 in NC_009381


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  304 bits (1140),  Expect = 8e-84, Method: Compositional matrix adjust.
 Identities = 276/682 (41%), Positives = 450/682 (66%), Gaps = 31/682 (4%)

Query  5    RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  64
            R ++  A ++L  VFMMI P+PT +VD+LIA+N+ +S +L+M+++ L  PL FS FPS+L
Sbjct  18   RSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVL  77

Query  65   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  124
            LITT++RLAL+I+TTRL+LL++DAG+IVEAFGQFVVGGNLAVGM+IF I+TVV+F+VITK
Sbjct  78   LITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITK  137

Query  125  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  184
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EAKR R  + KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMK  197

Query  185  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  244
            FV+GDAIA++I++ IN+IGGITIGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVT  257

Query  245  AGIIVTRVP---GSNKQSLANELAVQVGRQPDALW-LAAAILTVFALLPGFPFLIFITLa  300
            AG+I+TRVP   ++   +++ E+A Q+  QP A W +A+A +  FA +PG P ++F+T+A
Sbjct  258  AGMIITRVPNEDAAGPANIGREIAEQITSQPKA-WIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  301  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRM--TPGAVPLMLHCASNLHH-PH  356
                + ++L + R + + +QD  A   +E+ G  + RM   +    L +H + +L++   
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIEA  376

Query  357  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  416
            L  +I   R R   ++G+ LP   I  ++ L  + +   VY+  VL   + +++L+    
Sbjct  377  LVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDG  435

Query  417  CSSLVTNNQVLGAKMGSFD-----WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYT  471
             S  + N+Q  +   +  +     W+ +   +   +   P +     II  + R ++   
Sbjct  436  SSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP-ISPSTLIIERMERALQICG  494

Query  472  AEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRD---LRTIF  528
            ++FIG+QET+ +++ +E    EL +ELQR +P+++V   +       + +R       I 
Sbjct  495  PQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV---FSGAAAVGFRMRAAARYPVIA  551

Query  529  GALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKT---WISVLRLGDGVEHLIRDSIR  585
             +L+  +  E+D++ LT+YVRIAL+  +  ++  +     W+    +    E ++RDS+R
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWL----FTPESEGILRDSLR  607

Query  586  QTSSGTYSALEERQSLLILNKIKNAFAE--NQDAVLLTTLDVRRFVRKIIERDLFVLPVL  643
            QT + T+ AL+   SL+++++++ AF++  ++ AV+L + D+R  +R +++ ++  +PVL
Sbjct  608  QTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVL  667

Query  644  SWQELGDEMNLKVAGTIELIGD  665
            S  E+ +  ++KV G ++L  +
Sbjct  668  SFAEITNASEVKVLGRFDLENE  689

61) YPTB0322 in NC_006155


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  295 bits (1106),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 274/682 (41%), Positives = 449/682 (66%), Gaps = 31/682 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A ++L  VFMMI P+PT +VD+LIA+N+ +S +L+M+++ L  PL FS FPS+L
Sbjct  18   RSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            LITT++RLAL+I+TTRL+LL++DAG+IVEAFGQFVVGGNLAVGM+IF I+TVV+F+VITK
Sbjct  78   LITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EAKR R  + KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiivilvniiggitigvMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ +N+IGGITIGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVP---GSNKQSLANELAVQVGRQPDALW-LAAAILTVFALLPGFPFLIFITLa  311
            AG+I+TRVP   ++   +++ E+A Q+  QP A W +A+A +  FA +PG P ++F+T+A
Sbjct  258  AGMIITRVPNEDAAGPANIGREIAEQITSQPKA-WIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  312  aavaapaFL-LYRKNRRISQDgrangggeegaatgQRM--TPGAVPLMLHCASNLHH-PH  367
                + ++L + R + + +QD  A    E+ +  + RM   +    L +H + +L++   
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIEA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I  ++ L  + +   VY+  VL   + +++L+    
Sbjct  377  LVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDG  435

Query  428  CSSLVTNNQALGAKMGSFD-----WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYT  482
             S  + N+Q  +   +  +     W+ +   +   +   P +     II  + R ++   
Sbjct  436  SSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP-ISPSTLIIERMERALQICG  494

Query  483  AEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRD---LRTIF  539
            ++FIG+QET+ +++ +E    EL +ELQR +P+++V   +       + +R       I 
Sbjct  495  PQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV---FSGAAAVGFRMRAAARYPVIA  551

Query  540  GALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKT---WISVLRLGDGVEHLIRDSIR  596
             +L+  +  E+D++ LT+YVRIAL+  +  ++  +     W+    +    E ++RDS+R
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWL----FTPESEGILRDSLR  607

Query  597  QTSSGTYSALEERQSLLILNKIKNAFAE--NQDAVLLTTLDVRRFVRKIIERDLFVLPVL  654
            QT + T+ AL+   SL+++++++ AF++  ++ AV+L + D+R  +R +++ ++  +PVL
Sbjct  608  QTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVL  667

Query  655  SWQELGDEMNLKVAGTIELIGD  676
            S  E+ +  ++KV G ++L  +
Sbjct  668  SFAEITNASEVKVLGRFDLENE  689

62) YPTS_0346 in NC_010634


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  295 bits (1106),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 274/682 (41%), Positives = 449/682 (66%), Gaps = 31/682 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A ++L  VFMMI P+PT +VD+LIA+N+ +S +L+M+++ L  PL FS FPS+L
Sbjct  18   RSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            LITT++RLAL+I+TTRL+LL++DAG+IVEAFGQFVVGGNLAVGM+IF I+TVV+F+VITK
Sbjct  78   LITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EAKR R  + KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiivilvniiggitigvMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ +N+IGGITIGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVP---GSNKQSLANELAVQVGRQPDALW-LAAAILTVFALLPGFPFLIFITLa  311
            AG+I+TRVP   ++   +++ E+A Q+  QP A W +A+A +  FA +PG P ++F+T+A
Sbjct  258  AGMIITRVPNEDAAGPANIGREIAEQITSQPKA-WIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  312  aavaapaFL-LYRKNRRISQDgrangggeegaatgQRM--TPGAVPLMLHCASNLHH-PH  367
                + ++L + R + + +QD  A    E+ +  + RM   +    L +H + +L++   
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIEA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I  ++ L  + +   VY+  VL   + +++L+    
Sbjct  377  LVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDG  435

Query  428  CSSLVTNNQALGAKMGSFD-----WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYT  482
             S  + N+Q  +   +  +     W+ +   +   +   P +     II  + R ++   
Sbjct  436  SSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP-ISPSTLIIERMERALQICG  494

Query  483  AEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRD---LRTIF  539
            ++FIG+QET+ +++ +E    EL +ELQR +P+++V   +       + +R       I 
Sbjct  495  PQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV---FSGAAAVGFRMRAAARYPVIA  551

Query  540  GALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKT---WISVLRLGDGVEHLIRDSIR  596
             +L+  +  E+D++ LT+YVRIAL+  +  ++  +     W+    +    E ++RDS+R
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWL----FTPESEGILRDSLR  607

Query  597  QTSSGTYSALEERQSLLILNKIKNAFAE--NQDAVLLTTLDVRRFVRKIIERDLFVLPVL  654
            QT + T+ AL+   SL+++++++ AF++  ++ AV+L + D+R  +R +++ ++  +PVL
Sbjct  608  QTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVL  667

Query  655  SWQELGDEMNLKVAGTIELIGD  676
            S  E+ +  ++KV G ++L  +
Sbjct  668  SFAEITNASEVKVLGRFDLENE  689

63) YpsIP31758_3819 in NC_009708


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  294 bits (1102),  Expect = 8e-81, Method: Compositional matrix adjust.
 Identities = 274/682 (41%), Positives = 449/682 (66%), Gaps = 31/682 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A ++L  VFMMI P+PT +VD+LIA+N+ +S +L+M+++ L  PL FS FPS+L
Sbjct  18   RSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            LITT++RLAL+I+TTRL+LL++DAG+IVEAFGQFVVGGNLAVGM+IF I+TVV+F+VITK
Sbjct  78   LITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EAKR R  + KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiivilvniiggitigvMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ +N+IGGITIGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVP---GSNKQSLANELAVQVGRQPDALW-LAAAILTVFALLPGFPFLIFITLa  311
            AG+I+TRVP   ++   +++ E+A Q+  QP A W +A+A +  FA +PG P ++F+T+A
Sbjct  258  AGMIITRVPNEDAAGPANIGREIAEQITSQPKA-WIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  312  aavaapaFL-LYRKNRRISQDgrangggeegaatgQRM--TPGAVPLMLHCASNLHH-PH  367
                + ++L + R + + +QD  A    E+ +  + RM   +    L +H + +L++   
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIEA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I  ++ L  + +   VY+  VL   + +++L+    
Sbjct  377  LVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDG  435

Query  428  CSSLVTNNQVLGAKMGSFD-----WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYT  482
             S  + N+Q  +   +  +     W+ +   +   +   P +     II  + R ++   
Sbjct  436  SSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP-ISPSTLIIERMERALQICG  494

Query  483  AEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRD---LRTIF  539
            ++FIG+QET+ +++ +E    EL +ELQR +P+++V   +       + +R       I 
Sbjct  495  PQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV---FSGAAAVGFRMRAAARYPVIA  551

Query  540  GALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKT---WISVLRLGDGVEHLIRDSIR  596
             +L+  +  E+D++ LT+YVRIAL+  +  ++  +     W+    +    E ++RDS+R
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWL----FTPESEGILRDSLR  607

Query  597  QTSSGTYSALEERRSLLILNKIKNAFAE--NQDAVLLTTLDVRRFVRKIIERDLFVLPVL  654
            QT + T+ AL+   SL+++++++ AF++  ++ AV+L + D+R  +R +++ ++  +PVL
Sbjct  608  QTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVL  667

Query  655  SWQELGDEMNLKVAGTIELIGD  676
            S  E+ +  ++KV G ++L  +
Sbjct  668  SFAEITNASEVKVLGRFDLENE  689

64) YPK_3907 in NC_010465


> AY463491|3|G3|38619363|AAR25631.1|Pseudomonas_sp._KD|+|2616..4715|hrcV|-|type 
III secretion protein HrcV
Length=699

 Score =  294 bits (1102),  Expect = 8e-81, Method: Compositional matrix adjust.
 Identities = 274/682 (41%), Positives = 449/682 (66%), Gaps = 31/682 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A ++L  VFMMI P+PT +VD+LIA+N+ +S +L+M+++ L  PL FS FPS+L
Sbjct  18   RSEVVGAFIVLAIVFMMITPIPTWLVDILIAVNICISCLLIMLAMQLPRPLAFSTFPSVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            LITT++RLAL+I+TTRL+LL++DAG+IVEAFGQFVVGGNLAVGM+IF I+TVV+F+VITK
Sbjct  78   LITTMFRLALSIATTRLILLDQDAGHIVEAFGQFVVGGNLAVGMVIFMILTVVNFMVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EAKR R  + KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVHEAKRRRSELGKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiivilvniiggitigvMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ +N+IGGITIGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGITIGVIQHGMTAGDAVQLYSVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVP---GSNKQSLANELAVQVGRQPDALW-LAAAILTVFALLPGFPFLIFITLa  311
            AG+I+TRVP   ++   +++ E+A Q+  QP A W +A+A +  FA +PG P ++F+T+A
Sbjct  258  AGMIITRVPNEDAAGPANIGREIAEQITSQPKA-WIIASAAMLGFAAMPGMPTMVFVTIA  316

Query  312  aavaapaFL-LYRKNRRISQDgrangggeegaatgQRM--TPGAVPLMLHCASNLHH-PH  367
                + ++L + R + + +QD  A    E+ +  + RM   +    L +H + +L++   
Sbjct  317  IICCGGGLLQINRAKPKGNQDQAAPTTPENNGQEDLRMFLPSRQFVLQFHPSQSLERIEA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I  ++ L  + +   VY+  VL   + +++L+    
Sbjct  377  LVSEIRQRRNRLVVNFGLTLPSFIIEYQAHLEPDEFRFTVYEVPVLRATF-SETLVAIDG  435

Query  428  CSSLVTNNQVLGAKMGSFD-----WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYT  482
             S  + N+Q  +   +  +     W+ +   +   +   P +     II  + R ++   
Sbjct  436  SSQAIENDQQYSKGSSERQESQWIWVPTDAELLNNSNTQP-ISPSTLIIERMERALQICG  494

Query  483  AEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRD---LRTIF  539
            ++FIG+QET+ +++ +E    EL +ELQR +P+++V   +       + +R       I 
Sbjct  495  PQFIGLQETKAILGWLETEQPELAQELQRVMPLSRV---FSGAAAVGFRMRAAARYPVIA  551

Query  540  GALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKT---WISVLRLGDGVEHLIRDSIR  596
             +L+  +  E+D++ LT+YVRIAL+  +  ++  +     W+    +    E ++RDS+R
Sbjct  552  ETLIEHGQHERDVLALTDYVRIALKSLIYNQYCSQEGLLVWL----FTPESEGILRDSLR  607

Query  597  QTSSGTYSALEERRSLLILNKIKNAFAE--NQDAVLLTTLDVRRFVRKIIERDLFVLPVL  654
            QT + T+ AL+   SL+++++++ AF++  ++ AV+L + D+R  +R +++ ++  +PVL
Sbjct  608  QTQTETFFALNSESSLMLVQQLRMAFPQRSSERAVMLVAQDLRAPLRTLLQDEFHHVPVL  667

Query  655  SWQELGDEMNLKVAGTIELIGD  676
            S  E+ +  ++KV G ++L  +
Sbjct  668  SFAEITNASEVKVLGRFDLENE  689