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Homologs of int gene of AF261825

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Sputw3181_4090
( YP_965446.1 )

phage integrase family protein

NC_008750
(Shewanella sp. W3-18-1)

5e-179

2) SeHA_C1600
( YP_002045468.1 )

phage integrase family protein

NC_011083
(Salmonella enterica SL476)

3e-170

3) Sput200_4328
( YP_006012131.1 )

integrase family protein

NC_017566
(Shewanella putrefaciens 200)

8e-133

4) Sputcn32_4000
( YP_001185502.1 )

phage integrase family protein

NC_009438
(Shewanella putrefaciens CN-32)

1e-131

5) Dd1591_4262
( YP_003006531.1 )

integrase family protein

NC_012912
(Dickeya zeae Ech1591)

3e-104

6) Cphamn1_0211
( YP_001958665.1 )

integrase family protein

NC_010831
(Chlorobium phaeobacteroides BS1)

2e-70

7) FBFL15_2300
( YP_004844557.1 )

putative transposase

NC_016001
(Flavobacterium branchiophilum FL-15)

2e-70

8) ZPR_1828
( YP_003584354.1 )

tyrosine type site-specific recombinase

NC_014041
(Zunongwangia profunda SMA-87)

1e-67

9) Ccan_10590
( YP_004740282.1 )

Tyrosine recombinase xerD

NC_015846
(Capnocytophaga canimorsus Cc5)

3e-67

10) Belba_2814
( YP_006408102.1 )

site-specific recombinase XerD

NC_018010
(Belliella baltica DSM 15883)

1e-66

11) Cycma_4293
( YP_004776227.1 )

integrase

NC_015914
(Cyclobacterium marinum DSM 745)

4e-66

12) Alfi_0516
( YP_006409595.1 )

site-specific recombinase XerD

NC_018011
(Alistipes finegoldii DSM 17242)

9e-65

13) Echvi_3510
( YP_007225736.1 )

site-specific recombinase XerD

NC_019904
(Echinicola vietnamensis DSM 17526)

4e-64

14) Celly_3208
( YP_004263896.1 )

integrase

NC_015167
(Cellulophaga lytica DSM 7489)

6e-64

• Sequence Alignments

1) Sputw3181_4090 in NC_008750


> AF261825|3|G1|9944851|AAG03003.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_96-5227|+|367..1584|int|-|integrase
Length=405

 Score =  620 bits (2341),  Expect = 5e-179, Method: Compositional matrix adjust.
 Identities = 393/405 (98%), Positives = 403/405 (99%), Gaps = 0/405 (0%)

Query  1    MKVSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKRAKRDYEPLELYLYENPKTQAERQHN  60
            MKVSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKRAKRDYEPLELYLYENPKTQAERQHN
Sbjct  1    MKVSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKRAKRDYEPLELYLYENPKTQAERQHN  60

Query  61   KEMLRQAEAARSARLVESHSNKFQLEDRVKLASSFYEYYDKLTASKEsgsssnysiwisA  120
            KEMLRQAEAARSARLVESHSNKFQLEDRVKLASSFY+YYDKLTASKESGSSSNYSIWISA
Sbjct  61   KEMLRQAEAARSARLVESHSNKFQLEDRVKLASSFYDYYDKLTASKESGSSSNYSIWISA  120

Query  121  GKHLRSYHGRAELTFEELDKKFLEGFRKYLLEEPLTKSKSKLAKNTASSYFNKVRAALNE  180
            GKHLRSYHGRAELTFEE+DKKFLEGFRKYLLEEPLTKS+SKLAKNTASSYFNKVRAALNE
Sbjct  121  GKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALNE  180

Query  181  AYREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTRAECRYDVLKRAFLFSCTTGLRW  240
            A+REGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMT+AECRYDVLKRAFLFSCTTGLRW
Sbjct  181  AFREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRW  240

Query  241  SDIQKLTWKEIEEFQDGHYRIIFKQTKLLNAGNSLVYLDLPDSAVKLMGERQDKTERVFK  300
            SDIQKLTWKEIEEFQDGHYRIIFKQ+KLLNAGNSLVYLDLPDSAVKLMGERQDK+ERVFK
Sbjct  241  SDIQKLTWKEIEEFQDGHYRIIFKQAKLLNAGNSLVYLDLPDSAVKLMGERQDKAERVFK  300

Query  301  GLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTT  360
            GLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTT
Sbjct  301  GLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTT  360

Query  361  EIYADILESRRVTAMRGFPDIFEDKVKEPETCCPHCGKSVPHKTL  405
            EIYADILESRRVTAMRGFPDIFEDKV+E+ TCCPHCGKSV +KTL
Sbjct  361  EIYADILESRRVTAMRGFPDIFEDKVQESGTCCPHCGKSVLNKTL  405

2) SeHA_C1600 in NC_011083


> AF261825|3|G1|9944851|AAG03003.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_96-5227|+|367..1584|int|-|integrase
Length=405

 Score =  590 bits (2230),  Expect = 3e-170, Method: Compositional matrix adjust.
 Identities = 350/400 (88%), Positives = 382/400 (96%), Gaps = 2/400 (0%)

Query  1    MKVSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKRPKRDYEPLELYVYQSPKTQAERQHN  60
            MKVSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKR+KRDYEPLELY+Y++PKTQAERQHN
Sbjct  1    MKVSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKRAKRDYEPLELYLYENPKTQAERQHN  60

Query  61   KEMLRQAEAARSARLVESHANKFQLEDRVKLASSFYEYYDRLTSTKESGSTSNYSIWVSA  120
            KEMLRQAEAARSARLVESH+NKFQLEDRVKLASSFY+YYD+LT++KESGS+SNYSIW+SA
Sbjct  61   KEMLRQAEAARSARLVESHSNKFQLEDRVKLASSFYDYYDKLTASKESGSSSNYSIWISA  120

Query  121  GKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSKSKLAKNTASSYFNKVRAALNE  180
            GKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKS+SKLAKNTASSYFNKVRAALNE
Sbjct  121  GKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALNE  180

Query  181  AYREGIIRDNPVQRVKSVKAENTKRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRW  240
            A+REGIIRDNPVQRVKSVKAENT+RTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRW
Sbjct  181  AFREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRW  240

Query  241  SDINKLTWSEIEEFEPGHYRIIFDQQKLKNGGNSLVYLDLPDSAVTLLNIQNKEGPDDRV  300
            SDI+KLTW EIEEF+ GHYRIIF Q KL N+GNSLVYLDLPDSAV L+   ++++  +RV
Sbjct  241  SDIQKLTWKEIEEFQDGHYRIIFKQAKLLNAGNSLVYLDLPDSAVKLMG--ERQDKAERV  298

Query  301  FVGLKYNSYMNVALLQWAMRAGITKHVTFHAGRHTFAVAQLNRGVDIYSLSRLLGHSELR  360
            F GLKY+SY NVALL+WAM AG+ KHVTFH GRHTFAVAQLNRGVDIYSLSRLLGHSELR
Sbjct  299  FKGLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELR  358

Query  361  TTEIYADILESRRVTAMRSFPDIFEEQAKEFGSCCPHCGQ  400
            TTEIYADILESRRVTAMR+FPDIFE++ +E G+CCPHCG+
Sbjct  359  TTEIYADILESRRVTAMRGFPDIFEDKVQESGTCCPHCGK  398

3) Sput200_4328 in NC_017566


> AF261825|3|G1|9944851|AAG03003.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_96-5227|+|367..1584|int|-|integrase
Length=405

 Score =  466 bits (1756),  Expect = 8e-133, Method: Compositional matrix adjust.
 Identities = 261/389 (68%), Positives = 328/389 (85%), Gaps = 2/389 (0%)

Query  1    MKISIHKRDPDKNGLRAIRLVYYYGSKTSEDGSRAQKRSYETLNLFLYNKPKNAVEREHN  60
            MK+S++KR+P+ +GL+ +RLVYYYG   +EDG +  KR YE L+L+LY++PK   ER+HN
Sbjct  1    MKVSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKRAKRDYEPLELYLYENPKTQAERQHN  60

Query  61   KTTLQKAEAIRAKRLLEMESAKHGLDDRTKLNASFFDYFEQIAASKASGSKSNYSIWISA  120
            K  L++AEA R+ RL+E +S K  L+DR KL +SF+DY+++++ASK SGS SNYSIWISA
Sbjct  61   KEMLRQAEAARSARLVESHSNKFQLEDRVKLASSFYDYYDKLTASKESGSSSNYSIWISA  120

Query  121  GIHLHRYHRHAELTFEQVDKYFLEGFRHYLQHEAITKSDTGLSRNTACSYFNKIRAALNQ  180
            G HL+ YH +AELTFE++DK FLEGFR YL +E++TKS++ L++NTA SYFNK+RAALN+
Sbjct  121  GKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALNE  180

Query  181  AQRDRIIRDNPVEQVKSIKAERTQRTYLTLDEVKALTKAECRYDVLRRAFLFSCTTGLRW  240
            A R+ IIRDNPV++VKS+KAE TQRTYLTLDEV+A+TKAECRYDVL+RAFLFSCTTGLRW
Sbjct  181  AFREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRW  240

Query  241  SDIHKLVWGEIELFAQGHYRIIFSQIKLKNSGNGLQYLDLPDSAVRLLNLENKGKPTERV  300
            SDI+KL W EIE F +GHYRIIF Q KL N+GN+L YLDLPDSAV+L+   ++   +ERV
Sbjct  241  SDIQKLTWKEIEEFQDGHYRIIFKQAKLLNAGNSLVYLDLPDSAVKLMG--ERQDKAERV  298

Query  301  FKGLRYDSYSNVALVQWAIRAGITKHVTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELR  360
            FKGL+Y SY+NVAL++WA+ AG+ KHVTFH GRHTFAV QL RG+DIYSLSRLLGHSELR
Sbjct  299  FKGLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELR  358

Query  361  TTEIYADILETRRTEAMRTFPDIFDDSSD  389
            TTEIYADILE+RR  AMR FPDIF+D  +
Sbjct  359  TTEIYADILESRRVTAMRGFPDIFEDKVQ  387

4) Sputcn32_4000 in NC_009438


> AF261825|3|G1|9944851|AAG03003.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_96-5227|+|367..1584|int|-|integrase
Length=405

 Score =  462 bits (1741),  Expect = 1e-131, Method: Compositional matrix adjust.
 Identities = 260/389 (67%), Positives = 327/389 (85%), Gaps = 2/389 (0%)

Query  1    MKINIQKREPDKNGLRPIRLVYYYGSKTSEDGSRAQKRSYEPLNLFLYNKPKNAVEREYN  60
            MK++++KR+P+ +GL+ +RLVYYYG   +EDG +  KR YEPL+L+LY++PK   ER+ N
Sbjct  1    MKVSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKRAKRDYEPLELYLYENPKTQAERQHN  60

Query  61   KTTLQKAEAIRAKRLLEMESAKHGLDDSTKLNASFFDYFDQVTASKASGSKSNYSIWVSA  120
            K  L++AEA R+ RL+E +S K  L+D  KL +SF+DY+D++TASK SGS SNYSIW+SA
Sbjct  61   KEMLRQAEAARSARLVESHSNKFQLEDRVKLASSFYDYYDKLTASKESGSSSNYSIWISA  120

Query  121  GIHLHRYHRHAELTFEQIDKYFLEGFRHYLQHEAITKSDTGLSRNTACSYFNKIRAALNQ  180
            G HL+ YH +AELTFE+IDK FLEGFR YL +E++TKS++ L++NTA SYFNK+RAALN+
Sbjct  121  GKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALNE  180

Query  181  AQRDRIIRDNPVEQVKSIKAERTQRTYLTLDEVKALTKAECRYDVLRRAFLFSCTTGLRW  240
            A R+ IIRDNPV++VKS+KAE TQRTYLTLDEV+A+TKAECRYDVL+RAFLFSCTTGLRW
Sbjct  181  AFREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRW  240

Query  241  SDIHKLVWGEIELFSQGHYRIIFSQIKLKNSGNGLQYLDLPDSAVRLLNLENKGKPTERV  300
            SDI+KL W EIE F +GHYRIIF Q KL N+GN+L YLDLPDSAV+L+   ++   +ERV
Sbjct  241  SDIQKLTWKEIEEFQDGHYRIIFKQAKLLNAGNSLVYLDLPDSAVKLMG--ERQDKAERV  298

Query  301  FKGLRYDSYSNVALVQWAIRAGITKHVTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELR  360
            FKGL+Y SY+NVAL++WA+ AG+ KHVTFH GRHTFAV QL RG+DIYSLSRLLGHSELR
Sbjct  299  FKGLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELR  358

Query  361  TTEIYADILETRRTEAMRTFPDIFDESSD  389
            TTEIYADILE+RR  AMR FPDIF++  +
Sbjct  359  TTEIYADILESRRVTAMRGFPDIFEDKVQ  387

5) Dd1591_4262 in NC_012912


> AF261825|3|G1|9944851|AAG03003.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_96-5227|+|367..1584|int|-|integrase
Length=405

 Score =  371 bits (1395),  Expect = 3e-104, Method: Compositional matrix adjust.
 Identities = 222/384 (58%), Positives = 296/384 (78%), Gaps = 6/384 (1%)

Query  1    MKISIEFREPDAEGKRALRLTYYAGSYLEPATGIRKHKRSREPLDLFLYDKPRTPAQRLH  60
            MK+S++ R+P++ G + LRL YY G  +E   G ++ KR  EPL+L+LY++P+T A+R H
Sbjct  1    MKVSVNKRNPNSKGLQQLRLVYYYGV-VEGEDGKKRAKRDYEPLELYLYENPKTQAERQH  59

Query  61   NKETQRAAEAIRAKRLFEYETGKHHLDFSNAYKASFFEYFQEVTDQKAAGSKSNHSIWIS  120
            NKE  R AEA R+ RL E ++ K +L+      +SF++Y++ +T  K +GS SN SIWIS
Sbjct  60   NKEMLRQAEAARSARLVESHSNKFQLEDRVKLASSFYDYYDKLTASKESGSSSNYSIWIS  119

Query  121  ALKHLRQYHKLPELTFEEVDQLFLEGFRHYLMHKARTKSGTPLSRNTQSAYFNKLRAALN  180
            A KHLR YH  +ELTFEE+D+ FLEGFR YL++ + TKS + L++NT S+YFNK+RAALN
Sbjct  120  AGKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALN  179

Query  181  QAEQERLLPDNPVRRVKAIQGEKNKRVYLTEDEVRALAQAECRYNVLKRAFLFSCCTGLR  240
            +A +E ++ DNPV+RVK++++E+ +R YLT DEVRA+++AECRY+VLKRAFLFSC TGLR
Sbjct  180  EAFREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLR  239

Query  241  WSDIHKLTWAELEPFYD-HYRIVFTQKK----TSGLQYLDLNDMAMQLMGRPGKATERIF  295
            WSDI+KLTW E+E F D HYRI+F Q K     ++L YLDL D A++LMG     +ER+F
Sbjct  240  WSDIQKLTWKEIEEFQDGHYRIIFKQAKLLNAGNSLVYLDLPDSAVKLMGERQDKAERVF  299

Query  296  KGLKYSAWHNMELTRWALQAGITKKVTFHSARHTFAVIQLNRGVDIYALSRLLGHSELRT  355
            KGLKYS+  N+ L +WA+ AG+ K VTFH +RHTFAV QLNRGVDIY+LSRLLGHSELRT
Sbjct  300  KGLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRT  359

Query  356  TEIYADILESRRRDAMLDFPNVLG  379
            TEIYADILESRR  AM +FP+++ 
Sbjct  360  TEIYADILESRRVTAMRGFPDIFE  383

6) Cphamn1_0211 in NC_010831


> AF261825|3|G1|9944851|AAG03003.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_96-5227|+|367..1584|int|-|integrase
Length=405

 Score =  259 bits (966),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 164/378 (44%), Positives = 242/378 (65%), Gaps = 13/378 (3%)

Query  6    VHLRKRKQGKSGRISLYLEFYKGAVTQPDGKAKVLRDYEYLNLYLDDKPRTAAEKEHNKN  65
            V + KR+    G   L L +Y G V   DGK +  RDYE L+LYL ++P+T AE++HNK+
Sbjct  3    VSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKRAKRDYEPLELYLYENPKTQAERQHNKE  62

Query  66   ILELAKSIKAKRELEIKNGQYGFDSCVKAKALFLSYF---KAEAEKKSKPGYPGNWGSTL  122
            +L  A + ++ R +E  + ++ ++  VK  + F  Y+    A  E  S + Y + W S+ 
Sbjct  63   MLRQAEAARSARLVESHSNKFQLEDRVKLASSFYDYYDKLTASKESGSSSNY-SIWISAG  121

Query  123  KHLTRFVEKHRSVRVTFREIDKAFCEGFKDYLRDEATTRTGKGLSSASQGAYYGKFKACL  182
            KHL  +   H    +TF EIDK F EGF+ YL +E+ T++   L+  + ++Y+ K +A L
Sbjct  122  KHLRSY---HGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAAL  178

Query  183  NKAIKDGILSVDPAKGVARPKIVSHKREYLTFDELQAMAKAECRNPTLKRMFLFSCLTGL  242
            N A+++GI+  +P + V   K  + +R YLT+DE++AM+KAECR   LKR FLFSC TGL
Sbjct  179  NEAFREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGL  238

Query  243  RFSDCHKLIWGEVEQYGDG-WRIVFHQQK----TKGLQYHDISQQARELMGEQGAADDRV  297
            R SD +KL W E+E++ DG  RI+F Q K     ++L Y D+++ A  LMGE+    +RV
Sbjct  239  RWSDIQKLTWKEIEEFQDGHYRIIFKQAKLLNAGNSLVYLDLPDSAVKLMGERQDKAERV  298

Query  298  FFAISKYSAYLSIVLREWVLKAGITKHLTFHSGRHTFAVLQLENGTDIYTLSKLLGHREI  357
            F ++ KYS+Y ++ L +W + AG+ KH+TFH GRHTFAV QL+ G DIY+LS+LLGH E+
Sbjct  299  FKGL-KYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSEL  357

Query  358  EVTAIYADILDKKRREAM  375
              T IYADIL+ +R  AM
Sbjct  358  RTTEIYADILESRRVTAM  375

7) FBFL15_2300 in NC_016001


> AF261825|3|G1|9944851|AAG03003.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_96-5227|+|367..1584|int|-|integrase
Length=405

 Score =  259 bits (966),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 148/368 (41%), Positives = 246/368 (67%), Gaps = 15/368 (4%)

Query  24   MNSLLLMY-----NDEENKKRS---YEFLRLYLYDKPKNFLEKEHNKETQLLAESIRAQK  75
            ++ L L+Y     ++E+ KKR+   YE L LYLY++PK   E++HNKE    AE+ R+ +
Sbjct  15   LQQLRLVYYYGVVEGEDGKKRAKRDYEPLELYLYENPKTQAERQHNKEMLRQAEAARSAR  74

Query  76   ILDLQSRKHGFVSSVSGKIGFLEYF-KLVVENKCESSGNHGNWLSTLKHLTNFCKGKDVQ  134
            +++ +S K  +   V    +F +Y+ KL   +   SS+N + W+S+ KHL ++    ++ 
Sbjct  75   LVESHSNKFQLEDRVKLASSFYDYYDKLTASKESGSSSNYSIWISAGKHLRSYHGRAELT  134

Query  135  LSKIDDLFLESFKVYLLTNKISSRYERLSQNSALSYFNKVRTALKEAYHSKMIVENPINR  194
            +  ID  FLE+F+ YLL + ++    +L++N+A SYFNKVR+AL+EA++  +I +NP++R
Sbjct  135  FEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALNEAFREGIIRDNPVQR  194

Query  195  VKGIKEKETDRQYLTLEELQLLVKTDCDYPIMKDAFLFSCLTGLRFSDIKSLKWKNI-SF  253
            VK++K  +T+R YLTL+E++ + K++C Y ++K AFLFSC TGLR SDI+ L WK+I  F
Sbjct  195  VKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRWSDIQKLTWKEIEEF  254

Query  254  DNQNGYMIKFIQQK----TKGVEHLPISEQSIKIIGERKNEEDFIFENLIYSAYHNKILH  309
            ++ + Y I F Q K     +++  L +++ ++K++GER++  + +F  L YS+Y N  L 
Sbjct  255  QDGH-YRIIFKQAKLLNAGNSLVYLDLPDSAVKLMGERQDKAERVFKGLKYSSYTNVALL  313

Query  310  KWIEKAGIDKHITFHCGRHSFATLQLTMNTDIYTVSKLLGHRHLKTTEIYAKVIDKKKIN  369
             W   AG++KH+TFH GRH+FA  QL    DIY++S+LLGH +L+TTEIYA +++ +++ 
Sbjct  314  HWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESRRVT  373

Query  370  AVANMPDL  377
            A+   PD+
Sbjct  374  AMRGFPDI  381

8) ZPR_1828 in NC_014041


> AF261825|3|G1|9944851|AAG03003.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_96-5227|+|367..1584|int|-|integrase
Length=405

 Score =  249 bits (931),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 153/375 (41%), Positives = 242/375 (65%), Gaps = 12/375 (3%)

Query  1    MKVHLRKKKLKS-GKTSLYIEYYKGHKTTAEGKIKHLREFEYLELYLTTNPTKVSEKKKN  59
            MKV + K++ +S G   L + YY G     +GK +  R++E LELYL  NP   +E++ N
Sbjct  1    MKVSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKRAKRDYEPLELYLYENPKTQAERQHN  60

Query  60   KEQLELAEQILAIRKASIYQGKYKIQNNSKGRTSFLDFYEEKKEER-YQTKGNYDNWDAA  118
            KE L  AE   + R       K+++++  K  +SF D+Y+     +   + +NY  W +A
Sbjct  61   KEMLRQAEAARSARLVESHSNKFQLEDRVKLASSFYDYYDKLTASKESGSSSNYSIWISA  120

Query  119  QKHLENYCP-NHISFNEVDIDFIKGFKKYLDTVAVTKSNKNLSQNTKHTYFNKFKAAMRA  177
             KHL +Y    +++F+E+D  F+ GF+KYL   ++TKS+ +L++NT  +YFNK +AA+  
Sbjct  121  GKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALNE  180

Query  178  AFEEGYLKENLIAKVKGFAMGESKREYLTSDELKRLAKTPCNIQVFKDAFLFSALTGIRW  237
            AF EG +++N + +VK+    +++R YLT DE++ ++K+ C  +V+K AFLFS  TG+RW
Sbjct  181  AFREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRW  240

Query  238  SDIHKLTWSEVRDEGIDKSDNEIFRIVFKQKK----TEGMEYLYISKQARRLLGKRSEPK  293
            SDI+KLTW E     I+  ++  +RI+FKQ K     +++ YL ++  A +L+G R +  
Sbjct  241  SDIQKLTWKE-----IEEFQDGHYRIIFKQAKLLNAGNSLVYLDLPDSAVKLMGERQDKA  295

Query  294  DRVFTNLRYSAYMNLQLLRWCMAAGISKHITFHSARHTNAVLLLENGADIYTVSKRLGHK  353
            +RVF  L+YS+Y N+ LL+W M AG+ KH+TFH +RHT AV  L+ G DIY++S+ LGH 
Sbjct  296  ERVFKGLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHS  355

Query  354  EIRTTEIYAKIIDKK  368
            E+RTTEIYA I++ +
Sbjct  356  ELRTTEIYADILESR  370

9) Ccan_10590 in NC_015846


> AF261825|3|G1|9944851|AAG03003.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_96-5227|+|367..1584|int|-|integrase
Length=405

 Score =  248 bits (926),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 157/383 (41%), Positives = 254/383 (67%), Gaps = 10/383 (2%)

Query  1    MKISLFQRKLKD-GKVSLFIEYYRGSEVGKDGKRRHLREYENLKLYLHQNPTSKEEKKQN  59
            MK+S+ +R+ +  G   L + YY G   G DGK+R  R+YE L LYL +NP ++ E+++N
Sbjct  1    MKVSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKRAKRDYEPLELYLYENPKTQAERQHN  60

Query  60   EETLQLAENILAIRKTEYIQGKFDIKNTAKAKRIFLNYFSELAEEKQKKNSLNNYNCWYS  119
             E L+ AE   + R  E    KF++ +  K    F +Y+  L+  K+  +S +NY+ W S
Sbjct  61   KEMLRQAEAARSARLVESHSNKFQLEDRVKLASSFYDYYDKLTASKESGSS-SNYSIWIS  119

Query  120  TLQHLKKIVS-ANFTFDEIDENFVKKVRNYFDNKAVTKSSLPLSQNSKYSYFNKFKASIR  178
            + +HL+   + A++TF+EID +F+   R+Y+ + ++TKS   L++N+  SYFNK +A++ 
Sbjct  120  AGKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALN  179

Query  179  KAFEEGYLSINYASKVKSFAQAESQREYLTFDELQRLAKTNCKYEVLKRAFLFSCLSGLR  238
             AF EG +  N   +VKS    ++QR YLT+DE++ ++K++C+Y+VLKRAFLFSC +GLR
Sbjct  180  EAFREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLR  239

Query  239  WSDINTLVWSEVRD--EGEFSKVNFRQEK----TEGVEYLYISNQARELLGERKSMTDRV  292
            WSDI+ L W E+ +  +G++ ++ F+Q K     +++ YL +++ A  L+GER+  ++RV
Sbjct  240  WSDIQKLTWKEIEEFQDGHY-RIIFKQAKLLNAGNSLVYLDLPDSAVKLMGERQDKAERV  298

Query  293  FKGLKYGAVYNTEIVRWCNRAGVFKHITFHSARHTNAVLLLENGADIYTVSKRLGHSEIR  352
            FKGLKY++  N  +++W   AGV KH+TFH +RHT AV  L+ G DIY++S+ LGHSE+R
Sbjct  299  FKGLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELR  358

Query  353  TTSIYAKIVDKKNKEAAELIPNL  375
            TT IYA I++ +   A   +P++
Sbjct  359  TTEIYADILESRRVTAMRGFPDI  381

10) Belba_2814 in NC_018010


> AF261825|3|G1|9944851|AAG03003.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_96-5227|+|367..1584|int|-|integrase
Length=405

 Score =  246 bits (919),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 153/363 (43%), Positives = 241/363 (67%), Gaps = 18/363 (4%)

Query  1    MKVTLRQRNQGGKT--SLYLDYY----------NKGKRKTEYLNLYLEPNPKTKEQKEIN  48
            MKV++ +RN  +K    L L YY          +++KR  E L+LYL  NPKT+ +++ N
Sbjct  1    MKVSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKRAKRDYEPLELYLYENPKTQAERQHN  60

Query  49   KKTQQLAETIRAQRQIEIQNGTYGFRDSEKLKGSFTAYLQ-LLANKRKDSAGNYGNWDSM  107
            K   + AE+ R+ R +E ++  + + D  KL +SF  Y + L A+K  +S++NY+ W S 
Sbjct  61   KEMLRQAEAARSARLVESHSNKFQLEDRVKLASSFYDYYDKLTASKESGSSSNYSIWISA  120

Query  108  IKHFKKFMPQ-DISFEFVNREFVQDFKEYLDKKAIAHGVQKLSQNSKYSYFNKFRAALKQ  166
             KH++ +  + +++FE +++ F+++F+ YL   +++ +  KL++N+  SYFNK RAAL++
Sbjct  121  GKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALNE  180

Query  167  AVKDGIIPHNPAEGAEAFKQGEPEREFLTLEELQAAANTECENTQLKTAFIFSCLTGLRW  226
            A ++GII +NP +   + K  + +R +LTL+E++A +++EC    LK AF+FSC TGLRW
Sbjct  181  AFREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRW  240

Query  227  SDINKLLWSEVQHSNDRGYYIRFRQKKTKGAET----LPISEQAVGLLGERQDKDERVFK  282
            SDI+KL W E+++ +D  Y I F+Q K   A      L +++ AV L+GERQDK ERVFK
Sbjct  241  SDIQKLTWKEIEEFQDGHYRIIFKQAKLLNAGNSLVYLDLPDSAVKLMGERQDKAERVFK  300

Query  283  GLKYSAWHNLKLQQWMMKAGISKTITFHCARHTYATLQLTAGTDIYTVSKLLGHRELKTT  342
            GLKYS+  N+ L +W M AG+ K +TFH +RHT+A  QL  G DIY++S+LLGH EL+TT
Sbjct  301  GLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTT  360

Query  343  QVY  345
            ++Y
Sbjct  361  EIY  363

11) Cycma_4293 in NC_015914


> AF261825|3|G1|9944851|AAG03003.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_96-5227|+|367..1584|int|-|integrase
Length=405

 Score =  244 bits (912),  Expect = 4e-66, Method: Compositional matrix adjust.
 Identities = 154/371 (42%), Positives = 247/371 (67%), Gaps = 18/371 (4%)

Query  1    MKVTLRKRNQGGKT--SLYLDYY----------HKGKRKTEYLKLYLSPNAktkeekevn  48
            MKV++ KRN  +K    L L YY           ++KR  E L LYL  N+KT+ E++ N
Sbjct  1    MKVSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKRAKRDYEPLELYLYENPKTQAERQHN  60

Query  49   kktLQLAETIRAQRQIEIQNGVYGFRDNEKLKGSFLAYIELLANQRQ-DSPGNYGNWTSM  107
            K  L+ AE+ R+ R +E ++  + + D  KL +SF  Y + L+  ++ +S++NY+ W S 
Sbjct  61   KEMLRQAEAARSARLVESHSNKFQLEDRVKLASSFYDYYDKLTASKESGSSSNYSIWISA  120

Query  108  LKHLKAFCS-YEVSFSDIDRQFIQDFKYYLDKKAIAHGDQKLSQNSKYSYFNKLRAALKQ  166
             KHL+++ +  E++F +ID++F+++F+ YL   +++ ++ KL++N+  SYFNK+RAAL++
Sbjct  121  GKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALNE  180

Query  167  AVKDGILPTNPSEGVDAFKQGEPEREFLTLEELQAAANTECEIPQMKTAFIFSCLTGLRW  226
            A ++GI+  NP + V + K  + +R +LTL+E++A +++EC    +K AF+FSC TGLRW
Sbjct  181  AFREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRW  240

Query  227  SDINKLLWSEVQHSNDNGYYIRFRQKKTKGAET----LPISEQAFGLLGERQAPEERVFK  282
            SDI+KL W E+++ +D  Y I F+Q K   A      L +++ A  L+GERQ   ERVFK
Sbjct  241  SDIQKLTWKEIEEFQDGHYRIIFKQAKLLNAGNSLVYLDLPDSAVKLMGERQDKAERVFK  300

Query  283  GLKYSAWHNLKLQQWMMKAGISKTITFHCARHTYATLQLTAGTDIYTVSKLLGHKELKTT  342
            GLKYS+  N+ L +W M AG+ K +TFH +RHT+A  QL  G DIY++S+LLGH EL+TT
Sbjct  301  GLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTT  360

Query  343  QVYAKIIDEKK  353
            ++YA I++ ++
Sbjct  361  EIYADILESRR  371

12) Alfi_0516 in NC_018011


> AF261825|3|G1|9944851|AAG03003.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_96-5227|+|367..1584|int|-|integrase
Length=405

 Score =  240 bits (895),  Expect = 9e-65, Method: Compositional matrix adjust.
 Identities = 147/357 (42%), Positives = 237/357 (67%), Gaps = 17/357 (4%)

Query  30   GKREYEFLKLYLIPE-KTKADREANRQTLQLANSIKARRIVEVQNGEHGFKSAYASDTLF  88
            +KR+YE L LYL  + KT+A+R+ N++ L+ A++ ++ R+VE ++    +       + F
Sbjct  36   AKRDYEPLELYLYENPKTQAERQHNKEMLRQAEAARSARLVESHSNKFQLEDRVKLASSF  95

Query  89   FDYYRAMCARRLGAESTGNWGNWKSCLKHLQKYEPNERIRFSQITQEWVQGFRDYLEKDA  148
            +DYY  + A +  + S++N + W S  KHL+ Y+    + F +I +  ++GFR YL  ++
Sbjct  96   YDYYDKLTASK-ESGSSSNYSIWISAGKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEP  154

Query  149  CAWSCDERDRIKDHPLSRNSRVSYFNKLRACLNQAYEDRIIPINPMRGVEGFKAEEGTRM  208
             + S        +  L++N+  SYFNK+RA LN+A+ + II  NP++ V + KAE+  R 
Sbjct  155  LTKS--------QSKLAKNTASSYFNKVRAALNEAFREGIIRDNPVQRVKSVKAENTQRT  206

Query  209  YLTIEEVQRLAQTECEYPAIKRAFLFSCLTGLRRSDVIRLTWGDVH--QQGEFTRIIFKQ  266
            YLT++EV+ ++++EC Y  +KRAFLFSC TGLR+SD+ +LTW +++  Q+G++ RIIFKQ
Sbjct  207  YLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRWSDIQKLTWKEIEEFQDGHY-RIIFKQ  265

Query  267  KK----TSGQEYLDIPPQAAELMGERGKDAEHIFPNIHSPSCTNETIKRWVLRAGIHKDI  322
             K     ++  YLD+P  A  LMGER   AE++F  +  +S TN ++ +W + AG++K++
Sbjct  266  AKLLNAGNSLVYLDLPDSAVKLMGERQDKAERVFKGLKYSSYTNVALLHWAMLAGVQKHV  325

Query  323  TFHCGRHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKNKQAAVAKIPDIF  379
            TFH GRHTFAV  L+ G DIY++S+LLGH EL TT+IYA +L+  + +A+  +PDIF
Sbjct  326  TFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESRRVTAMRGFPDIF  382

13) Echvi_3510 in NC_019904


> AF261825|3|G1|9944851|AAG03003.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_96-5227|+|367..1584|int|-|integrase
Length=405

 Score =  238 bits (887),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 153/381 (41%), Positives = 245/381 (65%), Gaps = 7/381 (1%)

Query  1    MKISLKKKKLQNGKLS-LFIEYYKGSTTDEKGKRIHLRDFEFLKIYLHQNPNSAREKKEN  59
            MK+S++K++ ++  L  L + YY G   +E GK+   RD+E L +YL +NP++  E+++N
Sbjct  1    MKVSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKRAKRDYEPLELYLYENPKTQAERQHN  60

Query  60   KESLHLAENILAIRQSDYIQGKFDVKNISKSKRPFLDFYKEKMEEK-ANSEKNYGVWTSA  118
            KE L+ AE   + R  +    KF++ +  K   +F D+Y      K + S  NY++W SA
Sbjct  61   KEMLRQAEAARSARLVESHSNKFQLEDRVKLASSFYDYYDKLTASKESGSSSNYSIWISA  120

Query  119  FVHLKNCVS-SNFLFDEVDDSFTKRVRRYFDEKARTKSDLPLSMNSKYSYFNKFKACLRS  177
              HL++  + +++ F+E+D  F    R+Y+ E + TKS+  L+ N+  SYFNK +A L  
Sbjct  121  GKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALNE  180

Query  178  AFDEGYLNINYAARVKSFEQAESQREYLTFSELQALTNTQCKYKVLKKAFLFSCLTGLRW  237
            AF EG +  N   RVKS    ++QR YLT+ E++A+T+++C+Y VLK+AFLFSC TGLRW
Sbjct  181  AFREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRW  240

Query  238  SDINNLTWSEVRDEDDNTFRVNFRQKK----TDGVEYLYISKQARDLLGERQTPHDRVFY  293
            SDI++LTW E+ + +D  +R+ F+Q K     +++ YL ++  A  L+GERQ   +RVF 
Sbjct  241  SDIQKLTWKEIEEFQDGHYRIIFKQAKLLNAGNSLVYLDLPDSAVKLMGERQDKAERVFK  300

Query  294  GLKYSAVYNNEIVRWCNRAGVFKHITFHSARHTNAVLLLENGADLYTVQKRLGHKEIKTT  353
            GLKYS+  N  +++W   AGV KH+TFH +RHT AV  L+ G D+Y++ + LGH E++TT
Sbjct  301  GLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTT  360

Query  354  AIYAKIVDEKMRESAHIIPNL  374
             IYA I++ +   + + +P++
Sbjct  361  EIYADILESRRVTAMRGFPDI  381

14) Celly_3208 in NC_015167


> AF261825|3|G1|9944851|AAG03003.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_96-5227|+|367..1584|int|-|integrase
Length=405

 Score =  237 bits (884),  Expect = 6e-64, Method: Compositional matrix adjust.
 Identities = 149/371 (41%), Positives = 244/371 (66%), Gaps = 18/371 (4%)

Query  1    MKVTLRQRKKNDK--ISLYLDYY------HKGKRKT--EY--LRLYLTPNPKTKTEREVN  48
            MKV++ +R+ N K    L L YY      + GK+++  +Y  L LYL  NPKT++ER+ N
Sbjct  1    MKVSVNKRNPNSKGLQQLRLVYYYGVVEGEDGKKRAKRDYEPLELYLYENPKTQAERQHN  60

Query  49   KKTKQLAETICAQRQIEIQNGIYGFQDIEKLKGSFITYITALAEKKNT-SSGNYGNWNSM  107
            K   + AE+  + R +E ++  + ++D  KL +SF  Y   L+  K++ SS+NY+ W S 
Sbjct  61   KEMLRQAEAARSARLVESHSNKFQLEDRVKLASSFYDYYDKLTASKESGSSSNYSIWISA  120

Query  108  LKHLKKFCP-TDVSFQDIDKSFVERFKEYLDKEAIGRAGKQLSQNSKYSYYGKFSAALKQ  166
             KHL+ +   ++++F++IDK F+E F+ YL  E++ ++  +L++N+  SY+ K  AAL++
Sbjct  121  GKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALNE  180

Query  167  AVKDGILKVNPANGVEYFKQGEPQREFLTLDELQKAVNTECELPILKNAFIFSALTGLRW  226
            A ++GI++ NP + V   K  + QR +LTLDE++   ++EC   +LK AF+FS  TGLRW
Sbjct  181  AFREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRW  240

Query  227  SDIEKLIWSEIQHSKEMGYYIRFRQKK----TKGVETLPISDQARNLLGEKGNPDDKVFD  282
            SDI+KL W EI++ ++  Y I F+Q K     +++  L ++D A +L+GE+ +  ++VF 
Sbjct  241  SDIQKLTWKEIEEFQDGHYRIIFKQAKLLNAGNSLVYLDLPDSAVKLMGERQDKAERVFK  300

Query  283  GLHYSAWSNLKLQQWMMKAGITKTITFHCARHTYATLQLTLGTDIYTVSKLLGHKELRTT  342
            GL YS+ +N+ L +W M AG+ K +TFH +RHT+A  QL  G DIY++S+LLGH ELRTT
Sbjct  301  GLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTT  360

Query  343  QIYAKVIDDKK  353
            +IYA +++ ++
Sbjct  361  EIYADILESRR  371